Query 003208
Match_columns 839
No_of_seqs 594 out of 4609
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 19:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0318 WD40 repeat stress pro 100.0 1.9E-49 4.2E-54 389.4 55.6 518 16-670 58-602 (603)
2 KOG0319 WD40-repeat-containing 100.0 2.3E-49 4.9E-54 404.7 48.6 579 23-829 25-617 (775)
3 KOG0306 WD40-repeat-containing 100.0 1.1E-44 2.3E-49 370.4 47.5 523 5-670 44-622 (888)
4 KOG2106 Uncharacterized conser 100.0 1.7E-42 3.8E-47 338.4 49.6 530 95-831 83-626 (626)
5 KOG0318 WD40 repeat stress pro 100.0 6.5E-40 1.4E-44 322.5 58.8 563 35-831 30-602 (603)
6 KOG0319 WD40-repeat-containing 100.0 7.2E-42 1.6E-46 349.9 43.9 513 2-668 82-617 (775)
7 KOG0291 WD40-repeat-containing 100.0 2.3E-39 5E-44 331.6 56.5 556 4-673 35-615 (893)
8 KOG0271 Notchless-like WD40 re 100.0 2.5E-42 5.4E-47 326.1 29.1 319 16-444 114-476 (480)
9 KOG0974 WD-repeat protein WDR6 100.0 2.4E-40 5.2E-45 352.7 46.4 663 15-831 5-671 (967)
10 KOG0271 Notchless-like WD40 re 100.0 4E-42 8.7E-47 324.7 28.8 325 60-500 111-479 (480)
11 KOG0306 WD40-repeat-containing 100.0 1.7E-38 3.7E-43 325.1 45.3 476 89-672 35-582 (888)
12 KOG0291 WD40-repeat-containing 100.0 4.2E-36 9.2E-41 307.8 61.8 546 22-729 19-619 (893)
13 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-40 9.7E-45 315.4 22.0 279 17-376 175-458 (459)
14 KOG1063 RNA polymerase II elon 100.0 7.8E-35 1.7E-39 296.1 47.8 626 35-831 25-763 (764)
15 KOG0286 G-protein beta subunit 100.0 8E-36 1.7E-40 272.8 32.0 284 16-376 54-343 (343)
16 KOG0276 Vesicle coat complex C 100.0 1.8E-34 3.8E-39 289.6 40.0 459 16-611 12-491 (794)
17 KOG2106 Uncharacterized conser 100.0 5.7E-33 1.2E-37 272.1 47.8 505 16-669 103-625 (626)
18 KOG1408 WD40 repeat protein [F 100.0 8.4E-34 1.8E-38 288.4 40.1 523 5-611 59-714 (1080)
19 KOG0279 G protein beta subunit 100.0 7.1E-34 1.5E-38 258.6 32.0 296 122-553 5-313 (315)
20 KOG0292 Vesicle coat complex C 100.0 3.6E-32 7.8E-37 283.3 46.6 571 17-731 9-594 (1202)
21 KOG0272 U4/U6 small nuclear ri 100.0 7E-35 1.5E-39 279.9 22.6 283 127-500 170-458 (459)
22 KOG1539 WD repeat protein [Gen 100.0 1.7E-31 3.6E-36 277.5 48.2 539 3-668 55-646 (910)
23 KOG0273 Beta-transducin family 100.0 1.6E-33 3.5E-38 274.1 30.5 316 16-447 177-522 (524)
24 KOG0286 G-protein beta subunit 100.0 1E-32 2.2E-37 252.6 32.7 213 121-379 44-260 (343)
25 KOG0279 G protein beta subunit 100.0 5.9E-33 1.3E-37 252.6 30.9 283 16-378 14-313 (315)
26 KOG0315 G-protein beta subunit 100.0 2.3E-33 5.1E-38 250.6 27.7 281 1-357 17-309 (311)
27 KOG0315 G-protein beta subunit 100.0 2E-32 4.3E-37 244.7 30.1 282 36-388 11-299 (311)
28 KOG0285 Pleiotropic regulator 100.0 1.5E-32 3.3E-37 257.7 26.1 301 114-504 133-441 (460)
29 KOG1063 RNA polymerase II elon 100.0 9.6E-30 2.1E-34 259.2 47.4 584 3-671 33-700 (764)
30 KOG0276 Vesicle coat complex C 100.0 2.8E-30 6.2E-35 259.5 42.1 428 64-674 12-456 (794)
31 KOG0281 Beta-TrCP (transducin 100.0 6.1E-34 1.3E-38 265.8 14.3 258 1-338 214-480 (499)
32 KOG0295 WD40 repeat-containing 100.0 2.3E-32 5E-37 257.6 24.2 280 16-377 107-405 (406)
33 KOG0296 Angio-associated migra 100.0 8.1E-31 1.8E-35 247.5 32.6 341 123-610 55-398 (399)
34 KOG0273 Beta-transducin family 100.0 4E-31 8.7E-36 257.4 31.0 334 126-610 173-523 (524)
35 KOG0285 Pleiotropic regulator 100.0 1.2E-31 2.5E-36 251.9 26.1 280 16-378 150-439 (460)
36 KOG0645 WD40 repeat protein [G 100.0 1.9E-30 4.1E-35 235.3 32.8 295 122-502 4-311 (312)
37 KOG1408 WD40 repeat protein [F 100.0 5.1E-29 1.1E-33 253.8 45.6 602 89-832 50-714 (1080)
38 KOG1539 WD repeat protein [Gen 100.0 3.6E-29 7.8E-34 260.3 45.3 468 35-673 47-526 (910)
39 KOG0263 Transcription initiati 100.0 8.4E-32 1.8E-36 279.8 24.4 268 18-379 379-650 (707)
40 KOG0284 Polyadenylation factor 100.0 3.4E-32 7.4E-37 260.1 16.2 278 16-377 95-379 (464)
41 KOG0292 Vesicle coat complex C 100.0 5.9E-29 1.3E-33 259.5 40.7 364 64-555 8-399 (1202)
42 KOG0296 Angio-associated migra 100.0 6E-30 1.3E-34 241.7 27.9 294 1-377 83-397 (399)
43 KOG0265 U5 snRNP-specific prot 100.0 8.7E-30 1.9E-34 234.4 27.0 280 16-374 46-334 (338)
44 KOG2048 WD40 repeat protein [G 100.0 2.3E-27 5E-32 241.8 47.2 479 2-612 45-550 (691)
45 KOG0645 WD40 repeat protein [G 100.0 8.6E-29 1.9E-33 224.5 30.7 282 16-378 13-311 (312)
46 KOG2048 WD40 repeat protein [G 100.0 1.6E-26 3.6E-31 235.7 50.4 501 18-672 26-550 (691)
47 KOG0281 Beta-TrCP (transducin 100.0 3.8E-31 8.2E-36 247.2 13.6 268 18-379 198-478 (499)
48 KOG0295 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 238.7 20.8 257 1-335 127-405 (406)
49 KOG0266 WD40 repeat-containing 100.0 1.4E-28 3.1E-33 265.8 31.0 281 16-378 158-454 (456)
50 KOG0284 Polyadenylation factor 100.0 1.5E-29 3.2E-34 242.1 17.4 279 130-501 94-379 (464)
51 KOG0277 Peroxisomal targeting 100.0 2.2E-28 4.8E-33 219.6 23.5 282 21-377 12-308 (311)
52 cd00200 WD40 WD40 domain, foun 100.0 3.3E-27 7.2E-32 244.2 35.1 278 16-376 8-289 (289)
53 PLN00181 protein SPA1-RELATED; 100.0 3.5E-27 7.5E-32 275.4 38.3 285 16-377 482-792 (793)
54 KOG0263 Transcription initiati 100.0 9.5E-29 2.1E-33 257.2 22.2 249 2-335 398-648 (707)
55 KOG0316 Conserved WD40 repeat- 100.0 1.8E-27 3.9E-32 211.2 25.2 274 16-376 16-297 (307)
56 KOG0265 U5 snRNP-specific prot 100.0 4.3E-27 9.4E-32 216.7 27.8 282 59-445 42-335 (338)
57 KOG0293 WD40 repeat-containing 100.0 1.5E-27 3.2E-32 228.5 24.6 294 247-611 215-514 (519)
58 KOG0316 Conserved WD40 repeat- 100.0 6.7E-27 1.4E-31 207.6 26.2 286 124-501 9-298 (307)
59 KOG0313 Microtubule binding pr 100.0 5.7E-27 1.2E-31 222.6 26.3 283 16-377 104-417 (423)
60 KOG0293 WD40 repeat-containing 100.0 2.2E-27 4.7E-32 227.4 23.0 279 16-378 223-513 (519)
61 KOG0266 WD40 repeat-containing 100.0 3.2E-26 7E-31 247.4 32.4 286 60-445 154-451 (456)
62 KOG0274 Cdc4 and related F-box 100.0 3.7E-26 8E-31 244.8 29.1 272 16-379 207-483 (537)
63 PLN00181 protein SPA1-RELATED; 99.9 1.1E-24 2.3E-29 254.6 41.0 321 43-447 457-792 (793)
64 KOG0313 Microtubule binding pr 99.9 1.3E-25 2.9E-30 213.4 26.4 295 130-501 103-417 (423)
65 cd00200 WD40 WD40 domain, foun 99.9 8.6E-25 1.9E-29 226.0 34.9 282 126-500 3-289 (289)
66 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 234.3 20.7 272 34-378 36-327 (735)
67 KOG0282 mRNA splicing factor [ 99.9 1.1E-26 2.4E-31 227.7 17.9 292 245-608 203-503 (503)
68 KOG0282 mRNA splicing factor [ 99.9 2E-26 4.4E-31 225.9 18.2 287 55-445 205-502 (503)
69 KOG0283 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 235.7 24.7 319 122-555 256-578 (712)
70 KOG0310 Conserved WD40 repeat- 99.9 2.9E-25 6.3E-30 218.3 24.7 289 6-377 11-308 (487)
71 KOG0643 Translation initiation 99.9 3.3E-25 7E-30 200.8 22.8 244 302-660 4-251 (327)
72 KOG0277 Peroxisomal targeting 99.9 6.9E-25 1.5E-29 197.3 22.4 222 95-378 36-265 (311)
73 KOG0274 Cdc4 and related F-box 99.9 1.5E-24 3.3E-29 232.5 29.4 273 65-451 208-485 (537)
74 KOG0643 Translation initiation 99.9 6.4E-25 1.4E-29 198.9 21.9 279 16-379 9-318 (327)
75 KOG1446 Histone H3 (Lys4) meth 99.9 2.7E-23 5.8E-28 194.2 32.7 279 16-378 13-303 (311)
76 KOG0647 mRNA export protein (c 99.9 2.2E-24 4.8E-29 199.1 24.6 269 16-366 26-311 (347)
77 KOG0288 WD40 repeat protein Ti 99.9 8.3E-26 1.8E-30 217.0 15.7 279 16-376 174-459 (459)
78 KOG0268 Sof1-like rRNA process 99.9 2.2E-25 4.7E-30 210.5 17.7 291 247-673 57-348 (433)
79 KOG0278 Serine/threonine kinas 99.9 2.6E-25 5.7E-30 199.2 16.3 276 16-378 13-297 (334)
80 KOG0772 Uncharacterized conser 99.9 1.5E-24 3.2E-29 213.9 22.4 295 16-376 166-485 (641)
81 KOG0278 Serine/threonine kinas 99.9 8.3E-25 1.8E-29 196.0 18.2 288 126-505 8-300 (334)
82 KOG0275 Conserved WD40 repeat- 99.9 4.8E-25 1E-29 204.5 17.1 283 130-500 211-507 (508)
83 KOG0268 Sof1-like rRNA process 99.9 2.5E-25 5.5E-30 210.0 15.2 277 16-378 65-345 (433)
84 KOG0301 Phospholipase A2-activ 99.9 5.3E-24 1.1E-28 217.8 25.8 284 122-505 4-291 (745)
85 KOG0289 mRNA splicing factor [ 99.9 1E-23 2.3E-28 203.8 25.9 278 19-377 221-505 (506)
86 KOG0288 WD40 repeat protein Ti 99.9 4E-25 8.6E-30 212.4 16.1 203 124-379 167-372 (459)
87 KOG0772 Uncharacterized conser 99.9 5.6E-24 1.2E-28 209.8 24.5 308 122-501 157-486 (641)
88 KOG0301 Phospholipase A2-activ 99.9 9.2E-24 2E-28 216.0 25.7 281 56-448 6-288 (745)
89 KOG0275 Conserved WD40 repeat- 99.9 8.5E-25 1.8E-29 202.9 16.2 279 190-551 222-507 (508)
90 KOG0300 WD40 repeat-containing 99.9 6E-24 1.3E-28 196.8 21.7 296 16-379 147-477 (481)
91 KOG2096 WD40 repeat protein [G 99.9 4.5E-23 9.8E-28 191.5 27.2 313 9-376 77-400 (420)
92 KOG0305 Anaphase promoting com 99.9 1.7E-23 3.8E-28 215.0 26.7 263 35-377 188-460 (484)
93 KOG0310 Conserved WD40 repeat- 99.9 1.4E-23 3.1E-28 206.5 24.3 273 66-444 27-305 (487)
94 KOG1407 WD40 repeat protein [F 99.9 6.5E-23 1.4E-27 185.4 26.5 271 14-369 17-293 (313)
95 KOG0641 WD40 repeat protein [G 99.9 4.9E-22 1.1E-26 175.4 30.8 301 64-445 31-346 (350)
96 KOG1407 WD40 repeat protein [F 99.9 7.4E-23 1.6E-27 185.1 26.1 274 126-493 14-293 (313)
97 KOG1036 Mitotic spindle checkp 99.9 9.8E-23 2.1E-27 189.3 26.8 277 255-600 12-294 (323)
98 KOG0308 Conserved WD40 repeat- 99.9 8.9E-24 1.9E-28 214.4 20.9 237 89-379 39-286 (735)
99 KOG0294 WD40 repeat-containing 99.9 2.1E-22 4.6E-27 187.2 28.1 276 195-556 3-284 (362)
100 KOG1445 Tumor-specific antigen 99.9 9.7E-22 2.1E-26 198.4 35.0 225 96-378 54-293 (1012)
101 KOG1036 Mitotic spindle checkp 99.9 1.2E-22 2.7E-27 188.6 26.2 270 17-368 13-294 (323)
102 KOG0283 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 221.8 21.7 303 15-379 265-577 (712)
103 KOG0647 mRNA export protein (c 99.9 9.2E-23 2E-27 188.5 25.2 280 253-599 24-312 (347)
104 KOG0640 mRNA cleavage stimulat 99.9 1.7E-23 3.7E-28 193.4 19.7 287 16-377 111-425 (430)
105 KOG0299 U3 snoRNP-associated p 99.9 8.3E-23 1.8E-27 199.5 25.3 287 64-437 141-444 (479)
106 KOG0640 mRNA cleavage stimulat 99.9 4E-23 8.7E-28 191.0 21.8 237 341-678 106-343 (430)
107 KOG0294 WD40 repeat-containing 99.9 9.7E-23 2.1E-27 189.4 24.4 236 15-336 41-281 (362)
108 KOG0299 U3 snoRNP-associated p 99.9 7E-23 1.5E-27 200.0 24.6 309 125-552 135-455 (479)
109 PTZ00421 coronin; Provisional 99.9 1E-21 2.2E-26 211.0 34.4 271 16-359 19-314 (493)
110 KOG0973 Histone transcription 99.9 2.5E-22 5.5E-27 217.0 28.3 295 16-379 12-356 (942)
111 KOG0305 Anaphase promoting com 99.9 3.1E-22 6.7E-27 205.8 27.6 264 89-450 189-463 (484)
112 KOG1332 Vesicle coat complex C 99.9 4.7E-23 1E-27 184.5 17.5 251 65-378 11-286 (299)
113 KOG0300 WD40 repeat-containing 99.9 4.1E-22 8.9E-27 184.7 23.2 324 122-503 138-477 (481)
114 KOG0289 mRNA splicing factor [ 99.9 7.6E-22 1.7E-26 191.0 25.7 280 133-501 220-505 (506)
115 KOG1446 Histone H3 (Lys4) meth 99.9 6E-21 1.3E-25 178.5 30.6 292 247-610 5-303 (311)
116 KOG1963 WD40 repeat protein [G 99.9 5E-20 1.1E-24 195.0 41.2 532 82-733 26-594 (792)
117 KOG0639 Transducin-like enhanc 99.9 2.1E-22 4.5E-27 197.9 21.4 240 64-377 418-662 (705)
118 PTZ00420 coronin; Provisional 99.9 3.3E-21 7.1E-26 207.5 31.7 218 96-379 53-294 (568)
119 KOG0639 Transducin-like enhanc 99.9 1.8E-22 4E-27 198.3 19.8 279 15-377 417-703 (705)
120 KOG0973 Histone transcription 99.9 9.3E-22 2E-26 212.7 27.2 322 176-555 11-357 (942)
121 PTZ00420 coronin; Provisional 99.9 4.8E-21 1E-25 206.2 32.2 252 43-360 53-318 (568)
122 KOG0641 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 166.9 27.4 249 15-336 87-349 (350)
123 KOG0264 Nucleosome remodeling 99.9 5.2E-22 1.1E-26 194.3 21.0 259 16-336 123-404 (422)
124 PTZ00421 coronin; Provisional 99.9 6.1E-21 1.3E-25 205.0 31.2 228 16-321 74-316 (493)
125 KOG2096 WD40 repeat protein [G 99.9 3.6E-21 7.8E-26 178.9 23.9 304 250-668 80-400 (420)
126 KOG0646 WD40 repeat protein [G 99.9 3.6E-21 7.7E-26 188.6 23.1 275 44-386 18-316 (476)
127 KOG1445 Tumor-specific antigen 99.9 1.2E-19 2.7E-24 183.4 32.3 160 16-211 78-248 (1012)
128 KOG0646 WD40 repeat protein [G 99.9 7.4E-21 1.6E-25 186.4 21.4 257 5-317 62-328 (476)
129 KOG4283 Transcription-coupled 99.9 8.4E-20 1.8E-24 168.1 26.4 320 63-501 41-364 (397)
130 KOG4283 Transcription-coupled 99.9 4.2E-20 9.1E-25 170.0 24.3 303 16-377 42-364 (397)
131 KOG1538 Uncharacterized conser 99.9 7.3E-20 1.6E-24 186.1 27.9 464 19-612 14-488 (1081)
132 KOG0264 Nucleosome remodeling 99.9 1.8E-20 4E-25 183.5 22.3 262 130-447 122-403 (422)
133 KOG2445 Nuclear pore complex c 99.9 1.2E-19 2.6E-24 168.4 24.8 268 59-378 7-318 (361)
134 KOG1332 Vesicle coat complex C 99.9 1.7E-20 3.7E-25 168.2 18.4 234 191-502 21-286 (299)
135 KOG0269 WD40 repeat-containing 99.9 9.1E-21 2E-25 196.7 18.9 283 17-377 39-339 (839)
136 KOG0321 WD40 repeat-containing 99.9 4.9E-20 1.1E-24 187.1 23.7 304 184-613 55-394 (720)
137 KOG1963 WD40 repeat protein [G 99.9 1.5E-17 3.3E-22 176.3 43.4 482 22-611 21-539 (792)
138 KOG1034 Transcriptional repres 99.8 3.4E-19 7.3E-24 166.9 23.4 308 59-446 32-381 (385)
139 KOG0650 WD40 repeat nucleolar 99.8 4.4E-19 9.5E-24 178.8 23.8 293 16-375 399-732 (733)
140 KOG1034 Transcriptional repres 99.8 3.9E-19 8.4E-24 166.5 21.8 323 16-377 37-382 (385)
141 KOG1273 WD40 repeat protein [G 99.8 1.4E-18 3E-23 161.7 25.1 288 20-378 26-322 (405)
142 KOG0269 WD40 repeat-containing 99.8 7.1E-20 1.5E-24 190.1 17.9 286 134-503 41-341 (839)
143 KOG0270 WD40 repeat-containing 99.8 6.9E-19 1.5E-23 171.6 23.4 288 35-378 137-449 (463)
144 KOG1538 Uncharacterized conser 99.8 6.1E-18 1.3E-22 172.3 29.9 454 67-674 14-490 (1081)
145 KOG2055 WD40 repeat protein [G 99.8 1.4E-18 3E-23 170.0 24.2 288 133-502 214-512 (514)
146 KOG2445 Nuclear pore complex c 99.8 9.7E-18 2.1E-22 155.9 28.1 266 16-335 12-317 (361)
147 KOG2055 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 170.7 22.4 281 66-447 214-511 (514)
148 KOG1274 WD40 repeat protein [G 99.8 3.6E-18 7.9E-23 181.2 27.4 251 253-611 10-263 (933)
149 KOG0302 Ribosome Assembly prot 99.8 8.8E-19 1.9E-23 167.1 20.4 252 16-333 150-435 (440)
150 KOG0321 WD40 repeat-containing 99.8 4.8E-19 1E-23 180.0 19.4 329 260-673 53-394 (720)
151 KOG4328 WD40 protein [Function 99.8 2.8E-18 6E-23 167.9 23.4 294 16-378 185-495 (498)
152 KOG0267 Microtubule severing p 99.8 2.4E-20 5.3E-25 191.9 9.5 250 36-369 5-259 (825)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.7E-17 1.4E-21 168.4 35.5 267 36-379 2-280 (300)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.7E-17 5.9E-22 171.4 32.1 270 1-358 8-300 (300)
155 KOG4378 Nuclear protein COP1 [ 99.8 2.1E-18 4.6E-23 169.8 21.7 269 36-379 4-281 (673)
156 KOG1274 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 176.6 29.2 243 63-379 11-263 (933)
157 KOG0267 Microtubule severing p 99.8 3.6E-20 7.7E-25 190.7 9.3 234 129-442 25-261 (825)
158 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.5E-22 168.7 26.5 238 123-379 391-638 (733)
159 KOG1524 WD40 repeat-containing 99.8 3.3E-17 7.1E-22 163.1 28.6 503 15-671 12-524 (737)
160 KOG0302 Ribosome Assembly prot 99.8 4.9E-18 1.1E-22 162.0 21.2 211 125-378 144-378 (440)
161 KOG4378 Nuclear protein COP1 [ 99.8 3.9E-18 8.4E-23 168.0 20.6 276 2-360 10-305 (673)
162 KOG1009 Chromatin assembly com 99.8 2.3E-16 4.9E-21 152.5 26.2 349 177-612 12-374 (434)
163 KOG4328 WD40 protein [Function 99.8 1.1E-16 2.5E-21 156.7 23.3 263 53-380 175-452 (498)
164 KOG1517 Guanine nucleotide bin 99.8 8.9E-17 1.9E-21 172.5 24.0 307 5-379 1051-1382(1387)
165 KOG0270 WD40 repeat-containing 99.8 5.2E-17 1.1E-21 158.6 19.4 239 21-335 177-448 (463)
166 KOG1273 WD40 repeat protein [G 99.8 4.2E-16 9.1E-21 145.4 24.0 291 135-502 26-322 (405)
167 KOG2919 Guanine nucleotide-bin 99.7 3.5E-16 7.6E-21 146.4 22.0 277 21-369 53-361 (406)
168 KOG1188 WD40 repeat protein [G 99.7 5.7E-17 1.2E-21 153.1 16.1 285 37-378 42-346 (376)
169 KOG0322 G-protein beta subunit 99.7 7.3E-17 1.6E-21 146.8 16.1 297 15-377 12-322 (323)
170 KOG1007 WD repeat protein TSSC 99.7 5.3E-16 1.1E-20 143.0 21.2 271 43-378 39-361 (370)
171 KOG1188 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 148.9 18.8 285 194-554 41-347 (376)
172 KOG1007 WD repeat protein TSSC 99.7 3.8E-16 8.2E-21 143.9 19.3 259 16-335 62-360 (370)
173 KOG0303 Actin-binding protein 99.7 9.2E-16 2E-20 147.5 22.7 258 55-380 17-296 (472)
174 KOG0307 Vesicle coat complex C 99.7 3.6E-17 7.8E-22 178.4 14.1 289 21-379 10-328 (1049)
175 KOG2919 Guanine nucleotide-bin 99.7 3.7E-15 8.1E-20 139.7 23.2 260 68-379 52-328 (406)
176 KOG0290 Conserved WD40 repeat- 99.7 1.1E-14 2.3E-19 134.6 25.3 261 54-379 35-319 (364)
177 COG2319 FOG: WD40 repeat [Gene 99.7 9.7E-13 2.1E-17 145.0 46.6 372 127-611 60-443 (466)
178 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.2E-20 140.2 18.5 246 16-326 95-356 (364)
179 COG2319 FOG: WD40 repeat [Gene 99.7 1.1E-12 2.4E-17 144.6 44.9 365 15-503 63-443 (466)
180 KOG4227 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 143.1 20.6 285 16-377 55-386 (609)
181 KOG0649 WD40 repeat protein [G 99.7 5.1E-14 1.1E-18 126.8 25.4 245 68-379 13-275 (325)
182 KOG1310 WD40 repeat protein [G 99.7 8.2E-15 1.8E-19 146.7 22.3 247 16-289 49-306 (758)
183 KOG1009 Chromatin assembly com 99.7 2.3E-14 4.9E-19 138.8 24.1 269 60-382 8-376 (434)
184 KOG0644 Uncharacterized conser 99.7 1.7E-16 3.8E-21 166.1 10.1 268 16-377 189-467 (1113)
185 KOG0649 WD40 repeat protein [G 99.7 7E-14 1.5E-18 125.9 24.5 287 19-376 12-314 (325)
186 KOG4227 WD40 repeat protein [G 99.7 9.9E-15 2.1E-19 139.9 20.3 312 122-501 46-386 (609)
187 KOG1523 Actin-related protein 99.7 3.1E-14 6.6E-19 133.7 22.0 224 16-289 9-239 (361)
188 KOG0307 Vesicle coat complex C 99.6 7.4E-16 1.6E-20 168.2 12.1 245 19-335 66-326 (1049)
189 KOG0642 Cell-cycle nuclear pro 99.6 3.2E-15 6.9E-20 150.8 15.2 269 8-347 283-573 (577)
190 KOG1587 Cytoplasmic dynein int 99.6 1.2E-13 2.6E-18 147.5 28.0 277 44-379 222-517 (555)
191 KOG0322 G-protein beta subunit 99.6 1E-14 2.2E-19 132.9 16.4 296 302-669 8-322 (323)
192 KOG0303 Actin-binding protein 99.6 1.6E-14 3.6E-19 139.0 18.2 124 251-379 76-204 (472)
193 KOG0642 Cell-cycle nuclear pro 99.6 6.6E-15 1.4E-19 148.5 15.7 227 122-379 284-562 (577)
194 KOG1272 WD40-repeat-containing 99.6 1.7E-15 3.7E-20 148.8 10.6 268 21-375 133-406 (545)
195 KOG1517 Guanine nucleotide bin 99.6 1.5E-13 3.2E-18 148.2 23.5 299 133-504 1065-1383(1387)
196 KOG2110 Uncharacterized conser 99.6 5.6E-13 1.2E-17 127.9 24.2 240 6-288 70-332 (391)
197 KOG1240 Protein kinase contain 99.6 4.5E-13 9.7E-18 147.0 26.5 365 245-668 1037-1431(1431)
198 KOG0644 Uncharacterized conser 99.6 2E-15 4.4E-20 158.3 7.8 214 122-382 180-431 (1113)
199 KOG1334 WD40 repeat protein [G 99.6 1.9E-14 4.1E-19 142.5 14.1 312 16-379 141-467 (559)
200 KOG1524 WD40 repeat-containing 99.6 1.6E-13 3.4E-18 137.3 20.3 263 130-498 12-282 (737)
201 KOG2110 Uncharacterized conser 99.6 1.3E-11 2.9E-16 118.6 31.1 232 19-335 7-247 (391)
202 KOG1310 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 139.4 16.2 185 122-335 40-230 (758)
203 KOG0974 WD-repeat protein WDR6 99.6 2.2E-11 4.8E-16 132.4 35.7 153 191-389 97-257 (967)
204 KOG1240 Protein kinase contain 99.6 1.8E-12 3.8E-17 142.5 27.4 271 49-381 1034-1337(1431)
205 KOG1587 Cytoplasmic dynein int 99.5 1.4E-12 3E-17 139.4 25.3 276 278-612 222-518 (555)
206 PRK11028 6-phosphogluconolacto 99.5 1.7E-11 3.6E-16 128.9 32.5 275 37-378 5-304 (330)
207 PRK11028 6-phosphogluconolacto 99.5 2E-11 4.3E-16 128.3 31.4 262 2-335 10-303 (330)
208 KOG1334 WD40 repeat protein [G 99.5 3.4E-13 7.3E-18 133.7 15.0 314 122-502 132-466 (559)
209 KOG2111 Uncharacterized conser 99.5 1.5E-10 3.2E-15 109.4 30.7 293 20-450 8-324 (346)
210 KOG2041 WD40 repeat protein [G 99.5 1.9E-10 4.2E-15 119.4 34.4 495 64-671 13-574 (1189)
211 KOG1523 Actin-related protein 99.5 5.6E-12 1.2E-16 118.7 20.9 205 131-379 9-237 (361)
212 KOG4497 Uncharacterized conser 99.4 2.1E-11 4.6E-16 115.0 21.0 301 22-447 13-390 (447)
213 KOG1912 WD40 repeat protein [G 99.4 1.3E-09 2.8E-14 114.7 35.6 486 20-611 18-552 (1062)
214 KOG2111 Uncharacterized conser 99.4 1.5E-10 3.2E-15 109.4 25.7 236 4-286 75-322 (346)
215 KOG0771 Prolactin regulatory e 99.4 2.8E-12 6.1E-17 125.6 14.9 195 21-287 148-355 (398)
216 KOG1354 Serine/threonine prote 99.4 2.4E-11 5.2E-16 115.5 20.4 271 18-335 26-358 (433)
217 KOG1409 Uncharacterized conser 99.4 4.2E-11 9E-16 114.0 21.0 242 17-336 24-270 (404)
218 KOG3881 Uncharacterized conser 99.4 2.8E-11 6E-16 117.3 19.6 268 18-359 56-342 (412)
219 KOG2139 WD40 repeat protein [G 99.4 2.2E-10 4.8E-15 109.8 25.3 208 19-285 100-308 (445)
220 KOG0771 Prolactin regulatory e 99.4 6.1E-12 1.3E-16 123.3 14.7 194 82-335 154-353 (398)
221 KOG2394 WD40 protein DMR-N9 [G 99.4 4.4E-11 9.6E-16 120.4 21.0 242 35-357 135-383 (636)
222 PRK01742 tolB translocation pr 99.4 3.5E-11 7.6E-16 130.3 21.9 207 97-377 184-400 (429)
223 KOG4497 Uncharacterized conser 99.4 5E-10 1.1E-14 105.9 24.7 334 138-547 14-426 (447)
224 KOG1272 WD40-repeat-containing 99.4 3.1E-12 6.7E-17 126.2 10.0 189 136-379 133-324 (545)
225 KOG2321 WD40 repeat protein [G 99.3 4.5E-10 9.8E-15 114.1 23.1 279 16-377 50-342 (703)
226 PRK01742 tolB translocation pr 99.3 1.6E-10 3.5E-15 125.2 21.7 231 44-359 184-426 (429)
227 KOG2394 WD40 protein DMR-N9 [G 99.3 3.1E-11 6.8E-16 121.4 14.3 95 132-266 290-384 (636)
228 KOG3881 Uncharacterized conser 99.3 1.6E-10 3.4E-15 112.2 18.1 210 17-290 105-324 (412)
229 KOG1912 WD40 repeat protein [G 99.3 2E-09 4.4E-14 113.2 27.0 541 16-674 54-724 (1062)
230 PF02239 Cytochrom_D1: Cytochr 99.3 3.4E-08 7.5E-13 103.3 36.3 189 148-379 6-203 (369)
231 KOG2139 WD40 repeat protein [G 99.2 1.2E-08 2.5E-13 98.3 26.7 205 133-377 99-308 (445)
232 PF02239 Cytochrom_D1: Cytochr 99.2 8.8E-09 1.9E-13 107.7 27.9 295 2-379 14-348 (369)
233 KOG2315 Predicted translation 99.2 1.4E-08 3E-13 103.7 27.2 305 18-383 35-395 (566)
234 PRK03629 tolB translocation pr 99.2 4E-09 8.7E-14 114.0 24.0 201 128-385 194-413 (429)
235 KOG1409 Uncharacterized conser 99.2 1.8E-09 3.8E-14 103.2 17.4 251 122-449 14-271 (404)
236 KOG0309 Conserved WD40 repeat- 99.1 2.8E-10 6E-15 118.8 11.5 291 16-379 23-340 (1081)
237 KOG2321 WD40 repeat protein [G 99.1 8.2E-09 1.8E-13 105.2 21.4 237 67-378 53-302 (703)
238 KOG0280 Uncharacterized conser 99.1 1.8E-08 3.9E-13 94.4 21.3 269 44-376 46-331 (339)
239 PRK03629 tolB translocation pr 99.1 3.3E-08 7.2E-13 106.9 27.2 233 45-358 180-427 (429)
240 PF04762 IKI3: IKI3 family; I 99.1 1.9E-05 4.1E-10 92.3 50.8 463 18-611 22-520 (928)
241 TIGR03300 assembly_YfgL outer 99.1 1.1E-07 2.4E-12 102.0 29.5 265 35-379 66-339 (377)
242 KOG1354 Serine/threonine prote 99.1 1.7E-08 3.8E-13 96.4 19.9 235 132-378 25-301 (433)
243 PRK05137 tolB translocation pr 99.0 4.7E-08 1E-12 106.5 25.1 200 125-379 194-413 (435)
244 PRK04922 tolB translocation pr 99.0 2.8E-08 6.1E-13 108.1 23.0 200 126-380 197-413 (433)
245 PRK02889 tolB translocation pr 99.0 3.8E-08 8.2E-13 106.6 23.7 194 126-370 189-392 (427)
246 PF08662 eIF2A: Eukaryotic tra 99.0 2.5E-08 5.3E-13 94.4 19.2 112 255-382 58-183 (194)
247 PF04762 IKI3: IKI3 family; I 99.0 2.4E-05 5.3E-10 91.4 47.5 296 18-379 76-457 (928)
248 PF08662 eIF2A: Eukaryotic tra 99.0 4E-08 8.6E-13 93.0 19.8 112 132-288 59-181 (194)
249 KOG2041 WD40 repeat protein [G 99.0 1.1E-06 2.4E-11 92.2 31.1 497 18-610 15-573 (1189)
250 PRK04922 tolB translocation pr 99.0 9.6E-08 2.1E-12 103.9 24.2 232 44-358 184-432 (433)
251 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.5E-06 5.3E-11 87.1 32.3 268 44-379 27-331 (352)
252 PRK05137 tolB translocation pr 99.0 3E-07 6.5E-12 100.2 26.9 230 45-358 183-432 (435)
253 COG5170 CDC55 Serine/threonine 99.0 2.8E-08 6.1E-13 93.5 15.9 237 16-290 25-313 (460)
254 TIGR03300 assembly_YfgL outer 99.0 5.2E-07 1.1E-11 96.8 28.1 260 35-375 106-376 (377)
255 KOG1064 RAVE (regulator of V-A 98.9 7.3E-09 1.6E-13 118.8 12.8 189 16-290 2207-2402(2439)
256 PRK02889 tolB translocation pr 98.9 2.7E-07 5.9E-12 100.0 24.0 234 44-358 176-424 (427)
257 KOG0280 Uncharacterized conser 98.9 5.9E-07 1.3E-11 84.5 22.2 112 259-379 124-242 (339)
258 KOG2315 Predicted translation 98.9 4E-06 8.7E-11 86.2 29.8 340 45-555 12-392 (566)
259 COG5354 Uncharacterized protei 98.9 1.5E-06 3.3E-11 88.0 26.3 274 18-380 72-397 (561)
260 COG4946 Uncharacterized protei 98.9 1.3E-05 2.7E-10 80.6 32.3 223 82-367 276-507 (668)
261 KOG4547 WD40 repeat-containing 98.9 6.4E-07 1.4E-11 92.6 23.1 198 35-288 5-222 (541)
262 TIGR02800 propeller_TolB tol-p 98.8 7.4E-07 1.6E-11 97.3 24.3 199 126-379 183-398 (417)
263 KOG4547 WD40 repeat-containing 98.8 4.9E-07 1.1E-11 93.4 18.6 188 146-379 4-221 (541)
264 PF10282 Lactonase: Lactonase, 98.8 0.00013 2.9E-09 76.7 37.4 274 44-378 13-322 (345)
265 PRK11138 outer membrane biogen 98.8 1.4E-05 3E-10 86.1 30.7 271 35-379 70-354 (394)
266 PF10282 Lactonase: Lactonase, 98.8 0.00019 4.1E-09 75.5 38.4 284 4-356 13-345 (345)
267 COG5354 Uncharacterized protei 98.7 4.2E-06 9.1E-11 84.9 24.1 270 17-379 32-349 (561)
268 KOG2314 Translation initiation 98.7 3.8E-06 8.2E-11 85.9 23.9 282 20-383 252-578 (698)
269 TIGR02800 propeller_TolB tol-p 98.7 2.9E-06 6.2E-11 92.7 25.3 220 45-346 171-407 (417)
270 KOG3914 WD repeat protein WDR4 98.7 2.7E-07 5.8E-12 90.8 14.6 154 482-675 72-228 (390)
271 KOG0309 Conserved WD40 repeat- 98.7 3.7E-08 8.1E-13 103.3 8.3 227 6-288 93-341 (1081)
272 KOG4190 Uncharacterized conser 98.7 7.2E-08 1.6E-12 97.6 9.9 231 89-377 749-987 (1034)
273 KOG3914 WD repeat protein WDR4 98.7 1.7E-07 3.7E-12 92.1 12.1 85 251-344 146-232 (390)
274 PRK00178 tolB translocation pr 98.7 4.6E-06 1E-10 91.1 24.3 199 126-379 192-407 (430)
275 KOG4714 Nucleoporin [Nuclear s 98.7 4.2E-07 9.1E-12 83.9 13.2 76 257-341 180-259 (319)
276 PRK04792 tolB translocation pr 98.6 8.7E-06 1.9E-10 88.6 25.2 199 127-380 212-427 (448)
277 COG4946 Uncharacterized protei 98.6 0.00088 1.9E-08 67.8 42.8 230 324-612 242-479 (668)
278 KOG1064 RAVE (regulator of V-A 98.6 1.2E-07 2.6E-12 109.2 10.3 187 131-379 2207-2399(2439)
279 COG2706 3-carboxymuconate cycl 98.6 0.00015 3.3E-09 71.2 30.0 264 3-335 15-320 (346)
280 KOG4714 Nucleoporin [Nuclear s 98.6 8.9E-07 1.9E-11 81.8 13.1 113 190-334 189-316 (319)
281 PRK01029 tolB translocation pr 98.6 2.1E-05 4.6E-10 84.8 25.8 242 45-359 166-425 (428)
282 COG2706 3-carboxymuconate cycl 98.6 0.00085 1.8E-08 66.1 33.6 269 89-439 5-310 (346)
283 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00017 3.7E-09 73.8 30.5 261 4-344 27-339 (352)
284 PRK00178 tolB translocation pr 98.6 3.1E-05 6.7E-10 84.7 26.6 231 45-358 180-427 (430)
285 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00035 7.5E-09 65.2 27.5 99 268-379 23-124 (354)
286 PF00400 WD40: WD domain, G-be 98.5 4.7E-07 1E-11 60.3 6.6 38 247-284 2-39 (39)
287 PLN02919 haloacid dehalogenase 98.5 9.8E-05 2.1E-09 88.3 30.3 215 134-379 625-889 (1057)
288 PF15492 Nbas_N: Neuroblastoma 98.5 0.00044 9.5E-09 66.0 28.1 231 82-379 7-260 (282)
289 PRK04792 tolB translocation pr 98.5 4.9E-05 1.1E-09 82.7 24.9 231 45-358 199-446 (448)
290 KOG4190 Uncharacterized conser 98.5 4.4E-07 9.6E-12 92.1 8.1 297 248-606 727-1032(1034)
291 PF00400 WD40: WD domain, G-be 98.5 6.1E-07 1.3E-11 59.8 6.2 38 123-163 2-39 (39)
292 KOG2314 Translation initiation 98.4 0.00022 4.8E-09 73.4 25.9 276 20-379 213-526 (698)
293 PF15492 Nbas_N: Neuroblastoma 98.4 0.00011 2.3E-09 70.0 21.7 201 21-290 47-263 (282)
294 KOG4532 WD40-like repeat conta 98.4 8.3E-05 1.8E-09 69.4 20.4 233 89-378 85-331 (344)
295 PRK01029 tolB translocation pr 98.4 0.0001 2.2E-09 79.6 24.8 202 130-379 182-404 (428)
296 PF13360 PQQ_2: PQQ-like domai 98.4 0.00015 3.3E-09 72.1 24.2 218 43-341 2-236 (238)
297 PLN02919 haloacid dehalogenase 98.4 0.00032 7E-09 83.9 30.5 271 21-336 571-888 (1057)
298 KOG1275 PAB-dependent poly(A) 98.4 7.9E-06 1.7E-10 88.7 15.1 179 147-377 147-341 (1118)
299 COG5170 CDC55 Serine/threonine 98.4 7E-06 1.5E-10 77.8 12.8 248 132-388 26-321 (460)
300 KOG1832 HIV-1 Vpr-binding prot 98.3 2.7E-07 5.9E-12 98.9 3.8 193 16-290 1100-1295(1516)
301 KOG3617 WD40 and TPR repeat-co 98.3 3.4E-05 7.4E-10 83.0 19.2 105 23-165 21-131 (1416)
302 PRK11138 outer membrane biogen 98.3 0.00035 7.5E-09 75.3 26.1 262 35-377 121-393 (394)
303 KOG4532 WD40-like repeat conta 98.2 0.00015 3.1E-09 67.8 18.4 188 192-449 83-283 (344)
304 KOG0882 Cyclophilin-related pe 98.2 1.8E-05 3.9E-10 79.1 12.9 237 89-379 22-306 (558)
305 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0059 1.3E-07 57.3 29.6 158 133-344 53-215 (354)
306 KOG2695 WD40 repeat protein [G 98.2 7.2E-06 1.6E-10 79.1 8.9 154 151-346 228-387 (425)
307 PF13360 PQQ_2: PQQ-like domai 98.2 0.00036 7.8E-09 69.5 21.7 209 3-290 2-234 (238)
308 KOG2695 WD40 repeat protein [G 98.1 1.6E-05 3.4E-10 76.8 9.1 168 90-317 227-401 (425)
309 KOG1275 PAB-dependent poly(A) 98.1 8.4E-05 1.8E-09 81.1 14.8 184 36-285 149-341 (1118)
310 PF08450 SGL: SMP-30/Gluconola 98.0 0.021 4.5E-07 57.0 31.7 211 89-365 13-242 (246)
311 KOG2066 Vacuolar assembly/sort 98.0 0.00012 2.7E-09 78.9 14.1 184 132-378 39-233 (846)
312 PF07433 DUF1513: Protein of u 97.9 0.006 1.3E-07 60.4 24.0 199 135-379 7-248 (305)
313 PF07433 DUF1513: Protein of u 97.9 0.012 2.7E-07 58.2 25.9 210 21-290 8-251 (305)
314 PF08450 SGL: SMP-30/Gluconola 97.9 0.023 5E-07 56.7 28.9 217 22-317 4-233 (246)
315 PF11768 DUF3312: Protein of u 97.9 0.021 4.6E-07 60.6 28.5 77 578-674 257-333 (545)
316 KOG3621 WD40 repeat-containing 97.9 0.0018 3.9E-08 69.3 20.1 152 134-325 35-187 (726)
317 PF03178 CPSF_A: CPSF A subuni 97.8 0.029 6.3E-07 58.5 28.6 185 157-379 2-203 (321)
318 PRK04043 tolB translocation pr 97.8 0.006 1.3E-07 65.5 23.3 191 19-288 189-402 (419)
319 KOG0882 Cyclophilin-related pe 97.8 0.00028 6E-09 70.9 11.8 216 304-557 5-235 (558)
320 PF08596 Lgl_C: Lethal giant l 97.7 0.038 8.2E-07 58.4 27.9 260 67-377 3-334 (395)
321 KOG2066 Vacuolar assembly/sort 97.7 0.0011 2.3E-08 72.0 16.0 187 308-554 39-234 (846)
322 KOG2114 Vacuolar assembly/sort 97.7 0.01 2.2E-07 65.2 22.9 202 134-379 27-244 (933)
323 PF03178 CPSF_A: CPSF A subuni 97.6 0.09 1.9E-06 54.8 29.3 190 44-287 2-203 (321)
324 PF04841 Vps16_N: Vps16, N-ter 97.6 0.073 1.6E-06 57.1 28.4 48 45-105 62-109 (410)
325 PRK04043 tolB translocation pr 97.6 0.021 4.6E-07 61.4 24.3 189 134-379 189-401 (419)
326 cd00216 PQQ_DH Dehydrogenases 97.6 0.091 2E-06 58.2 29.9 97 270-379 303-425 (488)
327 PF04053 Coatomer_WDAD: Coatom 97.6 0.013 2.8E-07 62.8 22.1 225 67-378 34-262 (443)
328 KOG1645 RING-finger-containing 97.6 0.0045 9.8E-08 61.7 16.9 80 245-335 182-265 (463)
329 KOG3621 WD40 repeat-containing 97.6 0.012 2.7E-07 63.2 20.9 141 311-475 38-181 (726)
330 KOG3617 WD40 and TPR repeat-co 97.6 0.0053 1.1E-07 66.9 18.2 105 261-378 20-131 (1416)
331 PRK02888 nitrous-oxide reducta 97.5 0.03 6.5E-07 61.0 24.1 272 35-368 141-451 (635)
332 KOG2114 Vacuolar assembly/sort 97.5 0.0098 2.1E-07 65.3 19.2 157 190-380 32-203 (933)
333 PF11768 DUF3312: Protein of u 97.4 0.0063 1.4E-07 64.4 16.0 127 123-290 197-333 (545)
334 KOG1920 IkappaB kinase complex 97.3 0.051 1.1E-06 62.5 23.3 217 18-289 69-325 (1265)
335 KOG1645 RING-finger-containing 97.3 0.0064 1.4E-07 60.7 14.4 83 122-211 183-266 (463)
336 PF08553 VID27: VID27 cytoplas 97.3 0.033 7.1E-07 63.2 21.9 126 245-377 513-646 (794)
337 KOG1920 IkappaB kinase complex 97.3 0.16 3.5E-06 58.6 26.6 242 350-672 70-324 (1265)
338 cd00216 PQQ_DH Dehydrogenases 97.1 0.22 4.8E-06 55.2 25.9 33 314-346 402-435 (488)
339 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00057 1.2E-08 74.4 4.8 197 122-379 1091-1292(1516)
340 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.6E-08 42.3 5.6 38 247-284 3-40 (40)
341 PF08553 VID27: VID27 cytoplas 97.0 0.093 2E-06 59.6 21.8 153 35-211 493-647 (794)
342 KOG1897 Damage-specific DNA bi 97.0 0.89 1.9E-05 51.7 51.5 138 493-672 806-944 (1096)
343 PF05096 Glu_cyclase_2: Glutam 97.0 0.35 7.5E-06 47.1 22.2 148 21-211 48-203 (264)
344 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.076 1.6E-06 43.7 14.8 69 135-211 2-71 (111)
345 PRK02888 nitrous-oxide reducta 96.9 0.9 2E-05 50.0 31.4 105 265-379 285-405 (635)
346 PF06977 SdiA-regulated: SdiA- 96.9 0.47 1E-05 46.5 25.6 212 126-374 15-246 (248)
347 PF06433 Me-amine-dh_H: Methyl 96.8 0.66 1.4E-05 46.9 23.5 271 5-348 18-333 (342)
348 PF04053 Coatomer_WDAD: Coatom 96.8 0.34 7.3E-06 52.1 23.1 223 20-335 35-261 (443)
349 smart00320 WD40 WD40 repeats. 96.8 0.0025 5.5E-08 41.4 4.8 38 123-163 3-40 (40)
350 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.086 1.9E-06 43.4 13.8 99 259-373 2-109 (111)
351 PF06433 Me-amine-dh_H: Methyl 96.7 0.83 1.8E-05 46.2 27.4 262 44-379 17-321 (342)
352 PF08596 Lgl_C: Lethal giant l 96.7 0.36 7.7E-06 51.2 21.4 176 17-211 86-290 (395)
353 PF05694 SBP56: 56kDa selenium 96.6 1.2 2.6E-05 46.5 24.7 213 34-290 86-346 (461)
354 COG3204 Uncharacterized protei 96.5 0.62 1.3E-05 45.5 19.4 184 128-347 81-274 (316)
355 KOG2395 Protein involved in va 96.3 0.28 6.1E-06 51.4 17.5 122 245-377 365-499 (644)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 2.8 6.1E-05 46.8 27.1 31 317-347 471-502 (527)
357 PF06977 SdiA-regulated: SdiA- 96.2 1.5 3.2E-05 43.1 26.0 166 18-211 22-201 (248)
358 KOG1897 Damage-specific DNA bi 96.1 3.6 7.7E-05 47.1 57.5 319 190-554 266-614 (1096)
359 KOG2280 Vacuolar assembly/sort 96.0 0.86 1.9E-05 50.2 20.0 51 43-106 63-113 (829)
360 KOG1008 Uncharacterized conser 96.0 0.0026 5.6E-08 67.3 1.2 189 89-335 71-274 (783)
361 PF12894 Apc4_WD40: Anaphase-p 96.0 0.016 3.5E-07 39.5 4.5 31 580-610 11-41 (47)
362 PF00930 DPPIV_N: Dipeptidyl p 95.8 3.1 6.8E-05 43.9 24.2 243 96-368 22-301 (353)
363 KOG1008 Uncharacterized conser 95.8 0.0047 1E-07 65.4 1.9 202 133-378 57-275 (783)
364 PF04841 Vps16_N: Vps16, N-ter 95.7 3.8 8.2E-05 44.1 24.5 68 308-377 216-286 (410)
365 PF10168 Nup88: Nuclear pore c 95.5 3 6.5E-05 47.9 23.0 121 36-168 34-182 (717)
366 KOG2444 WD40 repeat protein [G 95.3 0.046 1E-06 50.8 6.5 106 146-287 69-178 (238)
367 KOG4640 Anaphase-promoting com 95.2 0.12 2.5E-06 55.3 9.6 67 190-290 29-96 (665)
368 PF12894 Apc4_WD40: Anaphase-p 95.1 0.068 1.5E-06 36.5 5.3 34 132-169 11-44 (47)
369 COG3386 Gluconolactonase [Carb 94.9 5.1 0.00011 40.9 22.4 117 247-367 153-274 (307)
370 PHA02713 hypothetical protein; 94.9 1.8 3.8E-05 48.8 18.8 61 315-378 461-533 (557)
371 PF07995 GSDH: Glucose / Sorbo 94.8 5.9 0.00013 41.3 25.5 62 533-605 269-330 (331)
372 PHA02713 hypothetical protein; 94.7 2.8 6.2E-05 47.2 19.7 61 267-335 463-532 (557)
373 COG3386 Gluconolactonase [Carb 94.6 4.2 9E-05 41.5 18.9 128 4-165 47-193 (307)
374 PF00780 CNH: CNH domain; Int 94.6 5.9 0.00013 40.1 26.7 148 191-379 5-166 (275)
375 COG3490 Uncharacterized protei 94.6 4.9 0.00011 39.1 19.9 102 22-154 72-180 (366)
376 KOG4441 Proteins containing BT 94.5 3 6.5E-05 46.9 19.4 220 35-329 285-534 (571)
377 PF00780 CNH: CNH domain; Int 94.4 6.4 0.00014 39.8 27.0 254 35-347 7-267 (275)
378 PF00930 DPPIV_N: Dipeptidyl p 94.3 8.3 0.00018 40.7 27.3 49 4-58 23-77 (353)
379 PF14583 Pectate_lyase22: Olig 94.3 7.9 0.00017 40.3 27.9 91 34-151 47-140 (386)
380 PF08728 CRT10: CRT10; InterP 94.2 0.82 1.8E-05 51.3 13.8 172 485-670 50-246 (717)
381 KOG4640 Anaphase-promoting com 94.2 0.23 5E-06 53.2 8.9 72 133-211 21-92 (665)
382 COG3490 Uncharacterized protei 94.1 5.1 0.00011 39.0 16.8 35 578-612 277-312 (366)
383 PRK13616 lipoprotein LpqB; Pro 94.1 5.1 0.00011 45.2 20.0 110 255-374 446-564 (591)
384 KOG2079 Vacuolar assembly/sort 93.8 1.5 3.2E-05 50.6 14.7 102 35-164 99-202 (1206)
385 PF02897 Peptidase_S9_N: Proly 93.8 12 0.00026 40.6 27.9 157 19-211 125-309 (414)
386 KOG2395 Protein involved in va 93.7 0.7 1.5E-05 48.6 11.1 123 122-285 366-499 (644)
387 KOG2444 WD40 repeat protein [G 93.7 0.25 5.4E-06 46.2 7.1 103 267-378 69-177 (238)
388 PF05096 Glu_cyclase_2: Glutam 93.7 7.8 0.00017 38.0 23.9 185 133-368 45-250 (264)
389 KOG2079 Vacuolar assembly/sort 93.6 0.28 6.1E-06 56.0 8.8 108 534-672 98-205 (1206)
390 KOG4441 Proteins containing BT 93.6 6.1 0.00013 44.5 19.4 152 424-611 327-500 (571)
391 PF12234 Rav1p_C: RAVE protein 93.5 1.5 3.3E-05 48.8 14.0 111 35-164 41-155 (631)
392 COG3391 Uncharacterized conser 93.1 14 0.0003 39.5 23.0 194 22-290 78-287 (381)
393 PF14727 PHTB1_N: PTHB1 N-term 93.1 14 0.0003 39.4 34.1 156 191-378 35-204 (418)
394 PF15390 DUF4613: Domain of un 93.0 16 0.00035 39.7 27.6 161 17-211 19-186 (671)
395 COG3823 Glutamine cyclotransfe 92.2 8.7 0.00019 35.7 14.4 105 35-172 56-165 (262)
396 PF15390 DUF4613: Domain of un 91.6 21 0.00046 38.9 18.7 121 133-288 57-188 (671)
397 PF07995 GSDH: Glucose / Sorbo 91.4 20 0.00044 37.4 22.4 50 20-76 4-59 (331)
398 PF12234 Rav1p_C: RAVE protein 91.1 4.1 8.8E-05 45.6 13.6 111 534-668 40-154 (631)
399 PRK13684 Ycf48-like protein; P 90.9 11 0.00024 39.3 16.3 158 16-211 171-331 (334)
400 PF14781 BBS2_N: Ciliary BBSom 90.7 10 0.00022 32.7 13.9 110 35-169 10-129 (136)
401 KOG1916 Nuclear protein, conta 90.6 0.59 1.3E-05 52.3 6.6 101 493-611 152-266 (1283)
402 COG3391 Uncharacterized conser 90.2 29 0.00062 37.1 30.4 261 44-379 11-284 (381)
403 COG0823 TolB Periplasmic compo 90.1 31 0.00067 37.3 20.5 90 97-210 218-311 (425)
404 KOG4499 Ca2+-binding protein R 89.8 15 0.00032 34.9 13.9 88 641-731 161-250 (310)
405 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.2 42 0.00091 37.6 30.6 109 35-174 70-198 (527)
406 KOG3630 Nuclear pore complex, 88.8 5.6 0.00012 46.4 12.5 57 255-318 197-253 (1405)
407 KOG1916 Nuclear protein, conta 88.7 0.14 2.9E-06 57.1 0.2 292 43-377 110-422 (1283)
408 PF14727 PHTB1_N: PTHB1 N-term 88.4 39 0.00085 36.2 33.1 172 21-211 23-204 (418)
409 PF08728 CRT10: CRT10; InterP 87.2 21 0.00046 40.5 15.7 122 133-286 101-246 (717)
410 TIGR03118 PEPCTERM_chp_1 conse 87.2 34 0.00075 34.2 24.1 249 68-358 25-307 (336)
411 PF10313 DUF2415: Uncharacteri 87.0 2.7 5.8E-05 27.9 5.2 34 133-166 1-34 (43)
412 PF10313 DUF2415: Uncharacteri 86.9 2.4 5.2E-05 28.1 5.0 31 18-53 1-34 (43)
413 PF14761 HPS3_N: Hermansky-Pud 86.5 30 0.00065 32.8 15.4 171 148-334 29-212 (215)
414 KOG3616 Selective LIM binding 86.5 20 0.00044 39.8 14.4 94 257-361 15-110 (1636)
415 COG5167 VID27 Protein involved 86.3 28 0.0006 37.1 14.7 60 318-379 573-633 (776)
416 COG0823 TolB Periplasmic compo 86.1 27 0.00058 37.7 15.5 128 44-204 218-349 (425)
417 COG5276 Uncharacterized conser 86.0 38 0.00082 33.5 25.4 146 192-379 95-242 (370)
418 PLN00033 photosystem II stabil 85.2 57 0.0012 34.9 17.4 151 257-445 239-396 (398)
419 PHA03098 kelch-like protein; P 85.1 37 0.0008 38.3 17.2 24 146-169 294-323 (534)
420 PLN00033 photosystem II stabil 84.8 16 0.00035 38.9 13.0 119 9-162 272-396 (398)
421 PF10168 Nup88: Nuclear pore c 84.5 25 0.00053 40.7 15.1 94 581-675 85-184 (717)
422 KOG3630 Nuclear pore complex, 83.2 9.4 0.0002 44.7 10.7 121 258-380 102-230 (1405)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 83.0 16 0.00034 39.0 11.8 52 123-177 298-349 (415)
424 PF14870 PSII_BNR: Photosynthe 82.9 59 0.0013 33.2 32.9 284 8-375 7-301 (302)
425 KOG1898 Splicing factor 3b, su 82.6 1.1E+02 0.0024 36.2 35.7 141 438-612 910-1050(1205)
426 PHA03098 kelch-like protein; P 82.4 52 0.0011 37.1 16.9 23 146-168 342-369 (534)
427 PF14870 PSII_BNR: Photosynthe 82.1 63 0.0014 33.0 31.3 154 254-445 142-301 (302)
428 KOG2247 WD40 repeat-containing 82.0 0.48 1E-05 49.3 0.3 149 137-338 39-190 (615)
429 PF14781 BBS2_N: Ciliary BBSom 82.0 33 0.00072 29.7 11.2 112 191-340 8-129 (136)
430 PHA02790 Kelch-like protein; P 81.9 89 0.0019 34.6 18.4 23 146-168 362-387 (480)
431 PF05694 SBP56: 56kDa selenium 81.6 31 0.00066 36.6 12.9 111 43-167 221-344 (461)
432 PF02897 Peptidase_S9_N: Proly 80.9 88 0.0019 33.9 28.8 109 259-378 126-260 (414)
433 PF10214 Rrn6: RNA polymerase 80.8 1.3E+02 0.0028 35.7 21.2 192 64-335 78-275 (765)
434 TIGR02276 beta_rpt_yvtn 40-res 79.6 8.2 0.00018 25.3 5.7 37 35-73 3-41 (42)
435 KOG2377 Uncharacterized conser 79.4 89 0.0019 33.1 20.5 116 254-377 64-184 (657)
436 KOG1900 Nuclear pore complex, 79.4 20 0.00043 43.0 11.9 145 199-379 95-273 (1311)
437 PHA02790 Kelch-like protein; P 78.9 95 0.0021 34.4 17.0 62 146-211 271-339 (480)
438 PF07569 Hira: TUP1-like enhan 78.7 7.6 0.00017 37.5 7.3 74 531-610 18-95 (219)
439 PRK13684 Ycf48-like protein; P 77.9 94 0.002 32.5 29.0 114 255-377 213-330 (334)
440 COG3204 Uncharacterized protei 76.9 84 0.0018 31.4 18.8 166 18-211 86-263 (316)
441 KOG2280 Vacuolar assembly/sort 76.0 1.5E+02 0.0032 33.8 19.1 54 327-382 63-116 (829)
442 PF07569 Hira: TUP1-like enhan 75.9 20 0.00043 34.7 9.3 69 310-379 14-96 (219)
443 KOG1900 Nuclear pore complex, 74.1 33 0.00072 41.3 11.7 163 493-674 98-276 (1311)
444 PRK13616 lipoprotein LpqB; Pro 74.0 1.7E+02 0.0036 33.4 18.3 72 132-211 447-525 (591)
445 PF14761 HPS3_N: Hermansky-Pud 74.0 15 0.00032 34.7 7.5 48 89-153 30-77 (215)
446 COG5167 VID27 Protein involved 73.7 64 0.0014 34.6 12.4 146 89-287 480-633 (776)
447 TIGR03606 non_repeat_PQQ dehyd 73.6 1.4E+02 0.0031 32.4 17.7 55 421-475 31-89 (454)
448 TIGR02604 Piru_Ver_Nterm putat 72.4 1.1E+02 0.0025 32.4 15.0 105 257-368 14-143 (367)
449 PF14583 Pectate_lyase22: Olig 71.4 1.4E+02 0.003 31.4 25.6 32 259-290 83-114 (386)
450 PF12341 DUF3639: Protein of u 71.0 10 0.00023 22.3 3.6 26 581-608 2-27 (27)
451 KOG1896 mRNA cleavage and poly 69.4 2.7E+02 0.0058 33.8 25.4 122 254-386 1095-1221(1366)
452 COG3823 Glutamine cyclotransfe 69.0 1E+02 0.0023 29.0 14.4 29 146-174 55-85 (262)
453 COG4590 ABC-type uncharacteriz 67.2 1.2E+02 0.0027 32.0 12.7 163 252-451 216-389 (733)
454 PF11635 Med16: Mediator compl 66.9 2.7E+02 0.0058 33.0 19.6 73 533-605 269-345 (753)
455 TIGR01063 gyrA DNA gyrase, A s 66.7 2.8E+02 0.006 33.1 25.2 169 427-611 543-719 (800)
456 PF14655 RAB3GAP2_N: Rab3 GTPa 64.3 2.1E+02 0.0045 30.8 30.1 43 248-290 299-341 (415)
457 KOG4499 Ca2+-binding protein R 64.1 1.4E+02 0.003 28.7 18.9 49 260-318 215-263 (310)
458 KOG1983 Tomosyn and related SN 63.3 73 0.0016 38.7 12.2 31 133-166 36-66 (993)
459 KOG4460 Nuclear pore complex, 61.3 80 0.0017 34.0 10.4 96 181-290 103-202 (741)
460 TIGR03548 mutarot_permut cycli 60.3 2.1E+02 0.0046 29.6 19.9 23 589-611 169-195 (323)
461 PF02333 Phytase: Phytase; In 59.9 2.3E+02 0.0051 29.9 23.9 204 319-554 69-291 (381)
462 PF10647 Gmad1: Lipoprotein Lp 59.7 1.9E+02 0.0041 28.7 18.2 153 67-278 25-187 (253)
463 KOG1896 mRNA cleavage and poly 59.5 4E+02 0.0087 32.5 45.2 156 484-672 1046-1215(1366)
464 PF11715 Nup160: Nucleoporin N 57.6 27 0.00058 39.6 7.2 85 590-674 156-252 (547)
465 PRK10115 protease 2; Provision 57.4 3.7E+02 0.0081 31.4 23.2 71 18-107 127-209 (686)
466 TIGR02604 Piru_Ver_Nterm putat 56.1 2.7E+02 0.0059 29.5 15.9 39 328-367 164-202 (367)
467 PF12768 Rax2: Cortical protei 55.7 2.3E+02 0.0051 28.6 13.0 63 5-74 17-97 (281)
468 PF10647 Gmad1: Lipoprotein Lp 54.3 2.3E+02 0.005 28.1 21.7 58 258-317 113-174 (253)
469 PF12657 TFIIIC_delta: Transcr 53.1 82 0.0018 29.1 8.4 33 134-166 87-122 (173)
470 PF11715 Nup160: Nucleoporin N 52.0 44 0.00095 37.9 7.8 34 257-290 215-252 (547)
471 smart00564 PQQ beta-propeller 51.5 28 0.00061 21.2 3.5 26 35-60 7-32 (33)
472 TIGR03074 PQQ_membr_DH membran 48.8 2.4E+02 0.0051 33.3 12.8 67 147-213 194-280 (764)
473 KOG4460 Nuclear pore complex, 47.3 4.2E+02 0.009 29.0 13.7 92 257-379 104-199 (741)
474 COG4257 Vgb Streptogramin lyas 46.9 3E+02 0.0066 27.3 20.4 190 21-289 65-265 (353)
475 KOG2377 Uncharacterized conser 46.5 2.3E+02 0.005 30.2 10.7 36 130-168 64-99 (657)
476 PF14779 BBS1: Ciliary BBSome 46.2 1.5E+02 0.0033 29.2 9.1 77 131-208 175-255 (257)
477 PF01011 PQQ: PQQ enzyme repea 45.6 40 0.00087 21.6 3.6 26 37-62 3-28 (38)
478 PF12657 TFIIIC_delta: Transcr 45.2 2.5E+02 0.0054 25.8 11.1 39 420-458 86-131 (173)
479 PF08801 Nucleoporin_N: Nup133 44.3 3.8E+02 0.0082 29.1 13.2 28 351-378 192-219 (422)
480 KOG0783 Uncharacterized conser 43.7 5.9E+02 0.013 29.7 14.4 61 35-107 196-258 (1267)
481 PF01436 NHL: NHL repeat; Int 43.6 67 0.0014 19.0 4.0 25 583-607 4-28 (28)
482 COG5276 Uncharacterized conser 42.3 3.7E+02 0.0081 27.0 29.4 198 132-379 86-286 (370)
483 KOG0918 Selenium-binding prote 42.2 1.7E+02 0.0037 30.5 8.9 114 43-169 228-346 (476)
484 PF02333 Phytase: Phytase; In 41.3 4.6E+02 0.01 27.8 24.9 201 89-337 70-291 (381)
485 PF07676 PD40: WD40-like Beta 41.0 95 0.0021 19.8 5.4 29 255-283 7-38 (39)
486 KOG2247 WD40 repeat-containing 40.0 4.2 9.1E-05 42.8 -2.5 111 257-379 35-148 (615)
487 TIGR03074 PQQ_membr_DH membran 39.0 7.3E+02 0.016 29.4 23.7 31 704-734 691-722 (764)
488 KOG1898 Splicing factor 3b, su 38.5 7.9E+02 0.017 29.7 34.6 43 131-173 581-626 (1205)
489 PF11635 Med16: Mediator compl 36.7 7.9E+02 0.017 29.2 21.0 77 191-281 269-345 (753)
490 PRK14131 N-acetylneuraminic ac 36.7 5.5E+02 0.012 27.3 19.1 12 158-169 190-201 (376)
491 COG4590 ABC-type uncharacteriz 36.1 5.7E+02 0.012 27.4 14.4 106 484-611 280-387 (733)
492 PF14269 Arylsulfotran_2: Aryl 35.6 5E+02 0.011 26.6 14.2 73 134-210 145-219 (299)
493 KOG2063 Vacuolar assembly/sort 35.2 8.6E+02 0.019 29.1 15.5 70 18-106 16-97 (877)
494 PF13449 Phytase-like: Esteras 34.2 5.5E+02 0.012 26.6 17.7 112 256-368 19-166 (326)
495 COG5308 NUP170 Nuclear pore co 32.9 1.5E+02 0.0032 34.5 7.4 89 580-674 181-279 (1263)
496 PLN02153 epithiospecifier prot 32.7 5.9E+02 0.013 26.5 22.7 23 146-168 85-112 (341)
497 PF12768 Rax2: Cortical protei 30.8 3.3E+02 0.0072 27.5 9.1 36 255-290 35-76 (281)
498 PRK05560 DNA gyrase subunit A; 30.6 1E+03 0.022 28.6 25.3 259 318-610 498-772 (805)
499 COG4246 Uncharacterized protei 30.6 5.4E+02 0.012 25.4 11.8 141 420-610 74-220 (340)
500 KOG0783 Uncharacterized conser 28.8 6.4E+02 0.014 29.5 11.3 53 594-664 400-452 (1267)
No 1
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-49 Score=389.41 Aligned_cols=518 Identities=18% Similarity=0.257 Sum_probs=380.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCee--eeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
|..++|-..|+ |. |.|+++|. .|.|||||....+. ..+++.+.+ +|..|+|+ .|+ ..|+
T Consensus 58 H~~~vtVAkyS--Ps----G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~Wd-------~ds----~RI~ 119 (603)
T KOG0318|consen 58 HAHQVTVAKYS--PS----GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISWD-------FDS----KRIA 119 (603)
T ss_pred ccceeEEEEeC--CC----ceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-ccccceeC-------CCC----cEEE
Confidence 88999999999 99 89999999 79999999876433 346777766 89999999 888 4455
Q ss_pred EEcC-----cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 93 LFGE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 93 ~~~~-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
+.|+ +.+.+||- +..+..+.||...|+++.|-| ...-+++||++|++|-+|+=...
T Consensus 120 avGEGrerfg~~F~~DS-----------------G~SvGei~GhSr~ins~~~Kp--sRPfRi~T~sdDn~v~ffeGPPF 180 (603)
T KOG0318|consen 120 AVGEGRERFGHVFLWDS-----------------GNSVGEITGHSRRINSVDFKP--SRPFRIATGSDDNTVAFFEGPPF 180 (603)
T ss_pred EEecCccceeEEEEecC-----------------CCccceeeccceeEeeeeccC--CCceEEEeccCCCeEEEeeCCCe
Confidence 5443 34555654 345567889999999999998 24457999999999999987655
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
+.-.+.+.|.+ .+.++.| +|||.++++.+.||+|.+||-. ++.
T Consensus 181 KFk~s~r~Hsk-FV~~VRy---sPDG~~Fat~gsDgki~iyDGk---------------------------------tge 223 (603)
T KOG0318|consen 181 KFKSSFREHSK-FVNCVRY---SPDGSRFATAGSDGKIYIYDGK---------------------------------TGE 223 (603)
T ss_pred eeeeccccccc-ceeeEEE---CCCCCeEEEecCCccEEEEcCC---------------------------------Ccc
Confidence 55555555544 5777777 7999999999999999999988 666
Q ss_pred eeEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec-cccceEEeEECCCEEEE
Q 003208 248 NLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLTDSFIIT 323 (839)
Q Consensus 248 ~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s 323 (839)
.+..+. +|++.|++|+|+||+.+++++|.|.+++|||+.+.+. .+.+. +.. -...-..+-|....|++
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~~---~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-----VSTWP---MGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-----EEEee---cCCchhceEEEEEEeCCeEEE
Confidence 666676 8999999999999999999999999999999999866 33221 111 11223345566889999
Q ss_pred EeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCc--CCCCc---ccccCCC
Q 003208 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSL--ESHPE---AKEFNGR 397 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~---~~~~~~~ 397 (839)
.+.+|+|.+++. ...++..+.+|.. +|++++.+|++++|++|+.||.|.-|+........+ ++|.. .+.....
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 999999999999 7779999999998 799999999999999999999999999954322222 22221 1222222
Q ss_pred cceEEeecCCCccceeec---------cCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceE
Q 003208 398 TEIFSIKIPNFSEQIRLT---------DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (839)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~ 468 (839)
.+++.+...+..+..... ........+++..+++.+++.+..+.+.+++ +. . .+..........
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~--~~-~----~~~~~~~~y~~s 447 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ--DQ-T----KVSSIPIGYESS 447 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe--cC-C----cceeeccccccc
Confidence 444444333322111110 0112345688888886444444444443322 11 1 222333455566
Q ss_pred EeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEE
Q 003208 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (839)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 548 (839)
+++++++. ..+++|+.||+|++|.++...+....... .+...+.. .++|||+.||+++...+.+.
T Consensus 448 ~vAv~~~~--------~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-----~h~a~iT~--vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 448 AVAVSPDG--------SEVAVGGQDGKVHVYSLSGDELKEEAKLL-----EHRAAITD--VAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred eEEEcCCC--------CEEEEecccceEEEEEecCCcccceeeee-----cccCCceE--EEECCCCcEEEEeccCCcEE
Confidence 77776654 89999999999999999887654332221 23333333 57999999999999999999
Q ss_pred EeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcc
Q 003208 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (839)
Q Consensus 549 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 628 (839)
+||+.+.+. .. ..+. -|+.+|+|++|||+++++|+||-|-+|.||++.+. ..+
T Consensus 513 ~yd~~s~~~-~~------------~~w~-FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP-------~~~------ 565 (603)
T KOG0318|consen 513 LYDVASREV-KT------------NRWA-FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP-------AKH------ 565 (603)
T ss_pred EEEcccCce-ec------------ceee-eeeeeEEEEEeCCCceEEEeccccceEEEEEccCh-------hhh------
Confidence 999998753 11 1221 38999999999999999999999999999999962 111
Q ss_pred eeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEe
Q 003208 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (839)
Q Consensus 629 ~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~ 670 (839)
-..+++|. ..|++|.|. . ...|+|+|.|.+||+|.+.
T Consensus 566 i~iknAH~-~gVn~v~wl---d-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIKNAHL-GGVNSVAWL---D-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEeccccc-cCceeEEEe---c-CceEEeccCcceeEEeccc
Confidence 24457887 559999999 3 4789999999999999874
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-49 Score=404.66 Aligned_cols=579 Identities=17% Similarity=0.225 Sum_probs=425.5
Q ss_pred EEEecCCCCCCCcceEEEeeCCeeEEEECCCCee-eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEE
Q 003208 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (839)
Q Consensus 23 l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~i 101 (839)
++++ ++ |..|++..+..|.+-|+++++. +..........++++++. ||++ .++.++..+.+++
T Consensus 25 ~~~s--~n----G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~-------~d~~---~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS--SN----GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALT-------PDEE---VLVTASRSQLLRV 88 (775)
T ss_pred eeEC--CC----CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeec-------CCcc---EEEEeeccceEEE
Confidence 8899 88 8999999999999999999987 555555555679999999 8874 7777788999999
Q ss_pred EEeeccCCCCCCCCCccccceeeeEeccC-CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCcee
Q 003208 102 FELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (839)
Q Consensus 102 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 180 (839)
|++++ ++.++..+. |+.||.-++|+| .+.+||+|+.|+.++|||+..+.+...++++.+ +
T Consensus 89 ~~L~t---------------gk~irswKa~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-v 149 (775)
T KOG0319|consen 89 WSLPT---------------GKLIRSWKAIHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-V 149 (775)
T ss_pred EEccc---------------chHhHhHhhccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCc-e
Confidence 99987 567788888 999999999999 999999999999999999999999999987654 5
Q ss_pred EEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeE
Q 003208 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (839)
Q Consensus 181 ~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 260 (839)
+.++.|+.. ....+|++|..|+.+++||+.. ...+++.+..|...|+
T Consensus 150 Vssl~F~~~-~~~~lL~sg~~D~~v~vwnl~~--------------------------------~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 150 VSSLLFHPH-WNRWLLASGATDGTVRVWNLND--------------------------------KRTCLHTMILHKSAVT 196 (775)
T ss_pred EEEEEeCCc-cchhheeecCCCceEEEEEccc--------------------------------CchHHHHHHhhhhhee
Confidence 677777543 3447899999999999999981 2335788899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-------CCEEEEEeCCCeEEEE
Q 003208 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGEDCTCRVW 333 (839)
Q Consensus 261 ~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~l~s~~~dg~i~vw 333 (839)
+++|.+|+..+++++.|..+.+||+...+. .+.+ .-...+-++.+- +.+++|+|.+|.+++|
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~-----l~~l------p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKK-----LKTL------PLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhh-----hhee------chhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 999999999999999999999999966554 1211 112233444443 3599999999999999
Q ss_pred cC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccc
Q 003208 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (839)
Q Consensus 334 ~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (839)
|. .++++.+.+......+..+...+....++....|..+.++|.+.- ..+.+
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------------------------- 319 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------------------------- 319 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh--------------------------
Confidence 99 666665554442324666666666677788888999999987542 11111
Q ss_pred eeeccCCCcceEEEEEec--CCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEE
Q 003208 412 IRLTDSKSEYVRCLHLTS--EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (839)
Q Consensus 412 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 489 (839)
-+.++.|..++|.. +..++++++.+.+..+++.... .+++.+| ...+.++++..+ +.++++
T Consensus 320 ----vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~----c~ii~GH-~e~vlSL~~~~~--------g~llat 382 (775)
T KOG0319|consen 320 ----VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY----CQIIPGH-TEAVLSLDVWSS--------GDLLAT 382 (775)
T ss_pred ----cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc----eEEEeCc-hhheeeeeeccc--------CcEEEE
Confidence 12335688888875 3478889999998766443322 2577777 556777775443 269999
Q ss_pred eCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCcccee
Q 003208 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (839)
Q Consensus 490 g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 569 (839)
|+.|.++++|.++++.... ..+....++...+.++ .+-.....++++++.|+++++|++...++... ..
T Consensus 383 ~sKD~svilWr~~~~~~~~---~~~a~~~gH~~svgav-a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~ 451 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKS---LCVAQANGHTNSVGAV-AGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PI 451 (775)
T ss_pred ecCCceEEEEEecCCcchh---hhhhhhccccccccee-eecccCccEEEEecCCceEEEecCCCcccccc-------cc
Confidence 9999999999995433221 1111222344444442 22223567899999999999999997432111 11
Q ss_pred eeeeccc-cccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEec
Q 003208 570 FLVAEFS-SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKL 648 (839)
Q Consensus 570 ~~~~~~~-~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~ 648 (839)
.+...+. ..|...|+|++++|+.+++||||.|.+.+||+++.. ....++.| |. -.|-+|.|+
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------------~l~~vLsG-H~-RGvw~V~Fs-- 514 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------------RLLGVLSG-HT-RGVWCVSFS-- 514 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------------eEEEEeeC-Cc-cceEEEEec--
Confidence 2222333 489999999999999999999999999999999942 24456664 43 479999999
Q ss_pred cCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEE
Q 003208 649 RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVV 728 (839)
Q Consensus 649 ~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~ 728 (839)
+....|+|+|.|++|+||.+++... .+....| .+.|..+.|- . .+..++-+-.++.+.+||..+.+.++
T Consensus 515 -~~dq~laT~SgD~TvKIW~is~fSC----lkT~eGH-~~aVlra~F~----~-~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 515 -KNDQLLATCSGDKTVKIWSISTFSC----LKTFEGH-TSAVLRASFI----R-NGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred -cccceeEeccCCceEEEEEecccee----eeeecCc-cceeEeeeee----e-CCcEEEeccCCCcEEEEeccchhhhh
Confidence 7778999999999999999998643 2222222 3334444332 1 13446666667788888877776544
Q ss_pred EEeeCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEeccccccccccccc
Q 003208 729 QIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKS 808 (839)
Q Consensus 729 ~~~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~~~~~~~~ 808 (839)
++ -+|...|.+++.++.
T Consensus 584 tl----------------------------------------------------D~H~DrvWaL~~~~~----------- 600 (775)
T KOG0319|consen 584 TL----------------------------------------------------DAHNDRVWALSVSPL----------- 600 (775)
T ss_pred hh----------------------------------------------------hhccceeEEEeecCc-----------
Confidence 33 267788888887654
Q ss_pred cCCCceEEEeccCCCeEEEEE
Q 003208 809 ALNKSSWIATGCEDGTVRLTR 829 (839)
Q Consensus 809 ~~~~~~~i~tg~eD~ti~iw~ 829 (839)
...|+|||.|+.|-+|.
T Consensus 601 ----~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 601 ----LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ----cceeEecCCCeEEEEee
Confidence 45899999999999995
No 3
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=370.42 Aligned_cols=523 Identities=16% Similarity=0.210 Sum_probs=372.6
Q ss_pred CccccccCCCc---------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEec
Q 003208 5 DLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (839)
Q Consensus 5 ~i~~w~~~~~~---------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 74 (839)
.+.+||+++++ -..+|||++-+ |+ ..+|+.|. ||.|+||+..++..+-++.+|+. .|+.+.|.
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~--~d----~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~fd 116 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSS--DD----ILLLAVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKFD 116 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeecc--CC----cceEEEEecCceEEeeccCCCceeeeeccccc-ceEEEEEc
Confidence 57899999983 23589999999 88 78889999 99999999999999999998877 69999999
Q ss_pred ccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe
Q 003208 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~ 154 (839)
..|. .++..+.|+.|.+||+-.+ .-...++||.+.|+.+-|.. +.++|++.+
T Consensus 117 -------~~G~---rlaSGskDt~IIvwDlV~E---------------~Gl~rL~GHkd~iT~~~F~~---~~~~lvS~s 168 (888)
T KOG0306|consen 117 -------KIGT---RLASGSKDTDIIVWDLVGE---------------EGLFRLRGHKDSITQALFLN---GDSFLVSVS 168 (888)
T ss_pred -------ccCc---eEeecCCCccEEEEEeccc---------------eeeEEeecchHHHhHHhccC---CCeEEEEec
Confidence 7772 4444455999999999742 34578899999999999987 788999999
Q ss_pred CCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 155 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
.|+.|++||+++..+..+.-.+ +..+|++.+ .+..+++++.|+.+.+|++..+.......
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~-r~Eiw~l~~-----~~~~lvt~~~dse~~v~~L~~~~D~~~~~-------------- 228 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDH-RGEIWALVL-----DEKLLVTAGTDSELKVWELAFEDDEKETN-------------- 228 (888)
T ss_pred cCceEEEEecccceeeeEEecc-cceEEEEEE-----ecceEEEEecCCceEEEEeeccccccccc--------------
Confidence 9999999999999988876544 446788876 23789999999999999996322111000
Q ss_pred eeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC-------------CCC------C
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-------------DSD------S 295 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-------------~~~------~ 295 (839)
..+. ....-...+...+....+...++++++++-+.|..+.++.+...... ... .
T Consensus 229 ~~~s------~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 229 RYIS------TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccce------eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 0000 01111112233455566777888889999999999999998754321 000 0
Q ss_pred ce-----eeeceEeeccccceEEeEEC-----CCEEEEEeCCCeEEEEcCC--Cce--------EEEeecccCCceEEEE
Q 003208 296 IE-----EVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSD--GKQ--------LKMIKEHIGRGIWRCL 355 (839)
Q Consensus 296 ~~-----~~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~~--~~~--------~~~~~~h~~~~i~~~~ 355 (839)
+. ++.......-...+.++.+. .+.++. -.++++..|.++ +.. ...+.+|.. .|.+++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~ 380 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLC 380 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchh-heeEEE
Confidence 00 00000011112345555554 234444 667788888772 221 135668888 599999
Q ss_pred EccCCCEEEEEeCCCcEEEEecC-CcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eE
Q 003208 356 YDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TL 433 (839)
Q Consensus 356 ~~~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 433 (839)
++.+...+++|+ .+.+++|+.. .++++++.. +.+.+..|.|.+ .+
T Consensus 381 vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--------------------------------~y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 381 VSSDSILLASGA-GESIKIWNRDTLKCIRTITC--------------------------------GYILASKFVPGDRYI 427 (888)
T ss_pred eecCceeeeecC-CCcEEEEEccCcceeEEecc--------------------------------ccEEEEEecCCCceE
Confidence 999877666665 5699999996 466655442 247888899866 56
Q ss_pred EEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC-----
Q 003208 434 YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP----- 508 (839)
Q Consensus 434 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~----- 508 (839)
++++.+|.+..+++.+..... ..+ .+++.++.++..|+. ..+++|+.|.+|++|++.--...+
T Consensus 428 v~G~k~Gel~vfdlaS~~l~E---ti~-AHdgaIWsi~~~pD~--------~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVE---TIR-AHDGAIWSISLSPDN--------KGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred EEeccCCceEEEEeehhhhhh---hhh-ccccceeeeeecCCC--------CceEEecCCcEEEEEeEEEEeccCcccce
Confidence 677889999988887654422 222 447889999887664 889999999999999985321111
Q ss_pred cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEee
Q 003208 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (839)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 588 (839)
...+.....-+-+..+++ ..+|||+++|+++--|.++++|-+++.+. ...-| +|.-+|.||++
T Consensus 496 ~lsl~~~rtLel~ddvL~--v~~Spdgk~LaVsLLdnTVkVyflDtlKF-------------flsLY--GHkLPV~smDI 558 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLC--VSVSPDGKLLAVSLLDNTVKVYFLDTLKF-------------FLSLY--GHKLPVLSMDI 558 (888)
T ss_pred eeeeccceEEeccccEEE--EEEcCCCcEEEEEeccCeEEEEEecceee-------------eeeec--ccccceeEEec
Confidence 111111111122334444 45899999999999999999999997642 11122 89999999999
Q ss_pred ecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEE
Q 003208 589 SFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 589 s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~ 668 (839)
|||+++++|||.|.+|+||-++-+ .....+. +|. +.|.+|.|. |....+.|+|.|+.++.||
T Consensus 559 S~DSklivTgSADKnVKiWGLdFG-------------DCHKS~f-AHd-DSvm~V~F~---P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFG-------------DCHKSFF-AHD-DSVMSVQFL---PKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccc-------------hhhhhhh-ccc-CceeEEEEc---ccceeEEEecCcceEEeec
Confidence 999999999999999999988742 1222222 665 889999999 6778899999999999998
Q ss_pred Ee
Q 003208 669 YD 670 (839)
Q Consensus 669 ~~ 670 (839)
-+
T Consensus 621 g~ 622 (888)
T KOG0306|consen 621 GE 622 (888)
T ss_pred hh
Confidence 43
No 4
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-42 Score=338.45 Aligned_cols=530 Identities=14% Similarity=0.145 Sum_probs=367.9
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCC--------cEEEEecCC
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRVWDISN 166 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~--------~i~vwd~~~ 166 (839)
--..+.+++++. ...+.+.+|.+.|.|++++| +.-++|+|...+ .+++||..+
T Consensus 83 vA~V~Vl~n~ee----------------~~Qr~y~GH~ddikc~~vHP---dri~vatGQ~ag~~g~~~~phvriWdsv~ 143 (626)
T KOG2106|consen 83 VAAVGVLYNWEE----------------RSQRHYLGHNDDIKCMAVHP---DRIRVATGQGAGTSGRPLQPHVRIWDSVT 143 (626)
T ss_pred eccEEEEEeehh----------------hhcccccCCCCceEEEeecC---CceeeccCcccccCCCcCCCeeeeccccc
Confidence 345667777753 23456789999999999999 888888875544 499999888
Q ss_pred CceEEEEecCCceeEEEEeeccCCccceEEEE--eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
...+..+....+. +.+++|.. ...+.+++. -+.+..+.+||++
T Consensus 144 L~TL~V~g~f~~G-V~~vaFsk-~~~G~~l~~vD~s~~h~lSVWdWq--------------------------------- 188 (626)
T KOG2106|consen 144 LSTLHVIGFFDRG-VTCVAFSK-INGGSLLCAVDDSNPHMLSVWDWQ--------------------------------- 188 (626)
T ss_pred ceeeeeecccccc-ceeeeecc-cCCCceEEEecCCCccccchhhch---------------------------------
Confidence 8877776633322 33444432 234555555 3556789999998
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc-ccceEEeEEC-CCEEE
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT-DSFII 322 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~-~~~l~ 322 (839)
.+......+..+..|....|+|....++.....+++.+|+.+.+.. .+..+ .+.++ ...|.|++|. +..++
T Consensus 189 k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~--~fek~ekk~Vl~v~F~engdvi 261 (626)
T KOG2106|consen 189 KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQG--IFEKREKKFVLCVTFLENGDVI 261 (626)
T ss_pred hhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEee--ccccccceEEEEEEEcCCCCEE
Confidence 4444555566677899999999776665555669999999998876 44443 22222 3679999999 68899
Q ss_pred EEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceE
Q 003208 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (839)
Q Consensus 323 s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (839)
||..+|.|.||+. ..+..+....|.+ +|.+++...+|.+|- |+.|..|..||-.-+.++..
T Consensus 262 TgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~---------------- 323 (626)
T KOG2106|consen 262 TGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET---------------- 323 (626)
T ss_pred eecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCccEee-cCccceEEeccccccccccc----------------
Confidence 9999999999999 4555566668888 799999999987655 99999999999432322221
Q ss_pred EeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCC
Q 003208 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPC 481 (839)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (839)
..|+ ..++|+.++-...+ +++++..+.|+...+.+.- ..+.++|.+ +.+.++.+++.
T Consensus 324 --elPe----------~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f----~~~v~gh~d-elwgla~hps~----- 380 (626)
T KOG2106|consen 324 --ELPE----------QFGPIRTVAEGKGD-ILVGTTRNFILQGTLENGF----TLTVQGHGD-ELWGLATHPSK----- 380 (626)
T ss_pred --cCch----------hcCCeeEEecCCCc-EEEeeccceEEEeeecCCc----eEEEEeccc-ceeeEEcCCCh-----
Confidence 1222 22467777765544 9999999999887775543 366677744 88888887765
Q ss_pred CCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccc
Q 003208 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (839)
Q Consensus 482 ~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 561 (839)
+.+++++.|+.+++|+ .. +..+.. ..+....+ ..|.|.| .++.|...|...+.|.++..
T Consensus 381 ---~q~~T~gqdk~v~lW~--~~----k~~wt~----~~~d~~~~--~~fhpsg-~va~Gt~~G~w~V~d~e~~~----- 439 (626)
T KOG2106|consen 381 ---NQLLTCGQDKHVRLWN--DH----KLEWTK----IIEDPAEC--ADFHPSG-VVAVGTATGRWFVLDTETQD----- 439 (626)
T ss_pred ---hheeeccCcceEEEcc--CC----ceeEEE----EecCceeE--eeccCcc-eEEEeeccceEEEEecccce-----
Confidence 8999999999999998 21 122221 11121112 4588888 99999999999999998743
Q ss_pred cCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCcee
Q 003208 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (839)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt 641 (839)
++..- ....++++++|+|+|.+||.|+.|+.|+||.++...+ ++.... -+|+ +.||
T Consensus 440 ---------lv~~~--~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~---------~y~r~~---k~~g-s~it 495 (626)
T KOG2106|consen 440 ---------LVTIH--TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR---------KYSRVG---KCSG-SPIT 495 (626)
T ss_pred ---------eEEEE--ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc---------EEEEee---eecC-ceeE
Confidence 11211 2278899999999999999999999999999986421 222221 2555 8999
Q ss_pred EEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEec
Q 003208 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (839)
Q Consensus 642 ~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~ 721 (839)
++.|+ +|+++|++.+.|..|.+|.-....+ ...++++++.. ..+..||.- |. .
T Consensus 496 hLDwS---~Ds~~~~~~S~d~eiLyW~~~~~~~---~ts~kDvkW~t----------------~~c~lGF~v--~g---~ 548 (626)
T KOG2106|consen 496 HLDWS---SDSQFLVSNSGDYEILYWKPSECKQ---ITSVKDVKWAT----------------YTCTLGFEV--FG---G 548 (626)
T ss_pred Eeeec---CCCceEEeccCceEEEEEccccCcc---cceecceeeee----------------eEEEEEEEE--ec---c
Confidence 99999 9999999999999999994333332 22345555322 224445421 11 1
Q ss_pred cCccEEEEEeeCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccC-CCCCccccCccccCccceEEEEEEeccccc
Q 003208 722 ITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISN-GERKMFPKNLHMQFHGREIHTLCFVSENFQ 800 (839)
Q Consensus 722 ~~~~~~~~~~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~ 800 (839)
++...+.. ..|+..-.+.+..+ ..+++++|+| || .+.+.+ ++++||+++|++|+|+
T Consensus 549 s~~t~i~a-----~~rs~~~~~lA~gd--------d~g~v~lf~y--Pc~s~rA~~---he~~ghs~~vt~V~Fl----- 605 (626)
T KOG2106|consen 549 SDGTDINA-----VARSHCEKLLASGD--------DFGKVHLFSY--PCSSPRAPS---HEYGGHSSHVTNVAFL----- 605 (626)
T ss_pred cCCchHHH-----hhhhhhhhhhhccc--------cCceEEEEcc--ccCCCcccc---eeeccccceeEEEEEe-----
Confidence 11111000 12222222222222 3489999999 77 445544 4559999999999999
Q ss_pred cccccccccCCCceEEEeccCCCeEEEEEee
Q 003208 801 VGANVKKSALNKSSWIATGCEDGTVRLTRYA 831 (839)
Q Consensus 801 ~~~~~~~~~~~~~~~i~tg~eD~ti~iw~~~ 831 (839)
.+++.+|.|| .|++|++|++.
T Consensus 606 ---------~~d~~li~tg-~D~Si~qW~lv 626 (626)
T KOG2106|consen 606 ---------CKDSHLISTG-KDTSIMQWRLV 626 (626)
T ss_pred ---------eCCceEEecC-CCceEEEEEeC
Confidence 5668899999 99999999973
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-40 Score=322.53 Aligned_cols=563 Identities=12% Similarity=0.134 Sum_probs=402.8
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~ 113 (839)
+.-++-..+..|.+-++++......+..| ..+++-..++ |.| .++|.+. .|+|||||.....
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iYtEH-~~~vtVAkyS-------PsG----~yiASGD~sG~vRIWdtt~~~----- 92 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIYTEH-AHQVTVAKYS-------PSG----FYIASGDVSGKVRIWDTTQKE----- 92 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeeeccc-cceeEEEEeC-------CCc----eEEeecCCcCcEEEEeccCcc-----
Confidence 44555556778999999888877666665 4468888899 887 6666655 5999999987533
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC--CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL 191 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 191 (839)
.-+..+++...++|.+++|.+ ++.+|+..++ ++..+++-..++..+..+.++.+. +.++.+ ...
T Consensus 93 --------hiLKnef~v~aG~I~Di~Wd~---ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~-ins~~~--Kps 158 (603)
T KOG0318|consen 93 --------HILKNEFQVLAGPIKDISWDF---DSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRR-INSVDF--KPS 158 (603)
T ss_pred --------eeeeeeeeecccccccceeCC---CCcEEEEEecCccceeEEEEecCCCccceeecccee-Eeeeec--cCC
Confidence 344556677789999999999 8888876654 333444444456667777777654 556665 245
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
...++++|+.|+.|-+|.-. ..+.-..+..|..-|.++.|+|||.++
T Consensus 159 RPfRi~T~sdDn~v~ffeGP---------------------------------PFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGP---------------------------------PFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred CceEEEeccCCCeEEEeeCC---------------------------------CeeeeecccccccceeeEEECCCCCeE
Confidence 66899999999999999865 566666778899999999999999999
Q ss_pred EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccC
Q 003208 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~ 348 (839)
++++.||++.+||-.+++. +.++. .-.+|.+.|.++.|+ ...++|++.|.+++|||+ ..++++++.....
T Consensus 206 at~gsDgki~iyDGktge~-----vg~l~--~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEK-----VGELE--DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EEecCCccEEEEcCCCccE-----EEEec--CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 9999999999999999877 44332 245899999999999 479999999999999999 7777777754332
Q ss_pred --CceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEE
Q 003208 349 --RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (839)
Q Consensus 349 --~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 425 (839)
..-..+.|. +..|++.+.+|.|.+++... ..++. ..+|+..|+++
T Consensus 279 v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~------------------------------i~GHnK~ITaL 326 (603)
T KOG0318|consen 279 VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKV------------------------------ISGHNKSITAL 326 (603)
T ss_pred hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhe------------------------------ecccccceeEE
Confidence 123344454 56799999999999999843 23333 34566789999
Q ss_pred EEecCC-eEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 426 HLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 426 ~~~~~~-~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
+.++++ .++.++.+|.|..|+....... ++....+...+.+++.... ..+++.+.|.++++.++...
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~---------~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASES---------GELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCC---------CcEEEEecCCeEEEEecccC
Confidence 999988 5667778999998877654432 2322334667888877553 46778888999999988654
Q ss_pred CCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEE
Q 003208 505 VHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (839)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 584 (839)
.........+ . .+..+ .+...++.+++.+..++.+.+=+...... .+. .-..+
T Consensus 395 ~~t~~~~~~l--g----~QP~~--lav~~d~~~avv~~~~~iv~l~~~~~~~~-------------~~~------~y~~s 447 (603)
T KOG0318|consen 395 GYTKSEVVKL--G----SQPKG--LAVLSDGGTAVVACISDIVLLQDQTKVSS-------------IPI------GYESS 447 (603)
T ss_pred cccccceeec--C----CCcee--EEEcCCCCEEEEEecCcEEEEecCCccee-------------ecc------ccccc
Confidence 4332221111 1 11222 45666766766666655444443433211 111 23367
Q ss_pred EEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcE
Q 003208 585 CLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCI 664 (839)
Q Consensus 585 ~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i 664 (839)
+++++|+++.+|+|.+||.|+||.++...+. ....+. .|. ..||.|+++ +|+.||+++..-+.+
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-----------ee~~~~-~h~-a~iT~vayS---pd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-----------EEAKLL-EHR-AAITDVAYS---PDGAYLAAGDASRKV 511 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCccc-----------ceeeee-ccc-CCceEEEEC---CCCcEEEEeccCCcE
Confidence 9999999999999999999999999864221 111111 232 689999999 999999999999999
Q ss_pred EEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEEEeeCCCCcceeeccC
Q 003208 665 CYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLG 744 (839)
Q Consensus 665 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~cgg~~r~~~~~~~ 744 (839)
.+|++.........+.+| .+-|..+.|.| ++.+++.|.-++.+++|+..+-.+.
T Consensus 512 v~yd~~s~~~~~~~w~FH----takI~~~aWsP-----~n~~vATGSlDt~Viiysv~kP~~~----------------- 565 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFH----TAKINCVAWSP-----NNKLVATGSLDTNVIIYSVKKPAKH----------------- 565 (603)
T ss_pred EEEEcccCceecceeeee----eeeEEEEEeCC-----CceEEEeccccceEEEEEccChhhh-----------------
Confidence 999998864432222222 33355666654 4557889999999999987544311
Q ss_pred CccCceeEEEEEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEeccccccccccccccCCCceEEEeccCCCe
Q 003208 745 DVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGT 824 (839)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~i~tg~eD~t 824 (839)
....+.|...|+.|+|..+ .-+++.|+|..
T Consensus 566 ----------------------------------i~iknAH~~gVn~v~wlde----------------~tvvSsG~Da~ 595 (603)
T KOG0318|consen 566 ----------------------------------IIIKNAHLGGVNSVAWLDE----------------STVVSSGQDAN 595 (603)
T ss_pred ----------------------------------eEeccccccCceeEEEecC----------------ceEEeccCcce
Confidence 1222478777999999854 67899999999
Q ss_pred EEEEEee
Q 003208 825 VRLTRYA 831 (839)
Q Consensus 825 i~iw~~~ 831 (839)
||+|.+.
T Consensus 596 iK~W~v~ 602 (603)
T KOG0318|consen 596 IKVWNVT 602 (603)
T ss_pred eEEeccc
Confidence 9999875
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.2e-42 Score=349.91 Aligned_cols=513 Identities=15% Similarity=0.169 Sum_probs=386.3
Q ss_pred CCcCccccccCCCc--------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 2 GKKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 2 ~d~~i~~w~~~~~~--------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+.+-+++|.+.+++ |.+||.-++|+ |. +.++++|+ |+.++|||+..+.....|++|.+ .|..+.
T Consensus 82 rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~--~~----g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-vVssl~ 154 (775)
T KOG0319|consen 82 RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFD--PT----GTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-VVSSLL 154 (775)
T ss_pred ccceEEEEEcccchHhHhHhhccCCCeEEEEEc--CC----CceEEeccccceEEEEEeeCCEEEEEecCCCc-eEEEEE
Confidence 34567899999886 89999999999 87 78888888 99999999999999999999776 699999
Q ss_pred ecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la 151 (839)
|.| +-++ .+|+. ..|+.+++||+.... .+++.+..|...|++++|.+ ++..++
T Consensus 155 F~~-------~~~~--~lL~sg~~D~~v~vwnl~~~~--------------tcl~~~~~H~S~vtsL~~~~---d~~~~l 208 (775)
T KOG0319|consen 155 FHP-------HWNR--WLLASGATDGTVRVWNLNDKR--------------TCLHTMILHKSAVTSLAFSE---DSLELL 208 (775)
T ss_pred eCC-------ccch--hheeecCCCceEEEEEcccCc--------------hHHHHHHhhhhheeeeeecc---CCceEE
Confidence 994 4321 23333 348999999998643 36788899999999999999 999999
Q ss_pred EEeCCCcEEEEecCCCceEEEEecCC--ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 152 IGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 152 s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
+++.|..+.|||+.+.+...++...+ .+.++.-. .....+.++.+.+.+|.+++||...++
T Consensus 209 s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~--~~~~~~~~~~TaG~~g~~~~~d~es~~--------------- 271 (775)
T KOG0319|consen 209 SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE--ELGGKGEYIITAGGSGVVQYWDSESGK--------------- 271 (775)
T ss_pred EeccCcEEEEeehhhhhhhheechhhheeeEEEech--hcCCcceEEEEecCCceEEEEecccch---------------
Confidence 99999999999998777766654322 12122110 012225699999999999999988332
Q ss_pred CCCCceeeEeecccccceeeEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 308 (839)
.+...+.. ...+..+...+....++....|..+.++|.++... .+ .+.|..
T Consensus 272 ------------------~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i--------~k--~ivG~n 323 (775)
T KOG0319|consen 272 ------------------CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI--------VK--QIVGYN 323 (775)
T ss_pred ------------------hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE--------eh--hhcCCc
Confidence 22211111 22255666666666788888889999999887544 22 667888
Q ss_pred cceEEeEECC---CEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCc
Q 003208 309 ARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (839)
Q Consensus 309 ~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 385 (839)
..|.+|+|-| ++++.++..+.+|+|+..+.....+.+|.. .|.+++...+|-+|+||+.|.++++|.++..+.+.
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e-~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~- 401 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTE-AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS- 401 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchh-heeeeeecccCcEEEEecCCceEEEEEecCCcchh-
Confidence 9999999985 899999999999999996666668999998 69999977778899999999999999884321111
Q ss_pred CCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC--eEEEEeccceEEEEEecCCCCceeEEEe----
Q 003208 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKIL---- 459 (839)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~---- 459 (839)
-.+....+|...|.+++++..+ .++.++.+..+..|.+..........++
T Consensus 402 ------------------------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 402 ------------------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred ------------------------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 0112234566778999987654 5666677888877766552222211111
Q ss_pred -eecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEE
Q 003208 460 -QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (839)
Q Consensus 460 -~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 538 (839)
...++..+.|+++.++. .++++|+.|.+.++|+++..... --..+|.+.+.+ +.|++..+.|
T Consensus 458 t~~aHdKdIN~Vaia~nd--------kLiAT~SqDktaKiW~le~~~l~-------~vLsGH~RGvw~--V~Fs~~dq~l 520 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPND--------KLIATGSQDKTAKIWDLEQLRLL-------GVLSGHTRGVWC--VSFSKNDQLL 520 (775)
T ss_pred HHHhhcccccceEecCCC--------ceEEecccccceeeecccCceEE-------EEeeCCccceEE--EEecccccee
Confidence 22346778888887664 89999999999999999733211 112345555555 3478888999
Q ss_pred EEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCC
Q 003208 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKS 618 (839)
Q Consensus 539 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~ 618 (839)
+|++.|++|++|.+.+.. +.+.| .+|...|..+.|-.+++.|++++.||-|+||++....
T Consensus 521 aT~SgD~TvKIW~is~fS--------------ClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e----- 580 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFS--------------CLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE----- 580 (775)
T ss_pred EeccCCceEEEEEeccce--------------eeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----
Confidence 999999999999999764 44444 3899999999999999999999999999999998531
Q ss_pred ccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEE
Q 003208 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 619 ~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~ 668 (839)
....+. .|. +.|-++..+ +....++|+|.||.|.+|.
T Consensus 581 --------C~~tlD-~H~-DrvWaL~~~---~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 581 --------CEMTLD-AHN-DRVWALSVS---PLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred --------hhhhhh-hcc-ceeEEEeec---CccceeEecCCCeEEEEee
Confidence 233332 665 889999888 6777899999999999996
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=331.61 Aligned_cols=556 Identities=14% Similarity=0.173 Sum_probs=401.1
Q ss_pred cCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecc
Q 003208 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (839)
Q Consensus 4 ~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 75 (839)
+.+.++|+.+.+ +...|++++.| |+ |.++++.. .|...+-+......++.+.- +. +|.+|.||
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialS--p~----g~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~-~v~~i~fS- 105 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALS--PD----GTLLLAVDERGRALLVSLLSRSVLHRFNF-KR-GVGAIKFS- 105 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeC--CC----ceEEEEEcCCCcEEEEecccceeeEEEee-cC-ccceEEEC-
Confidence 356778887754 44679999999 99 77877777 78888888877777777774 44 59999999
Q ss_pred cccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC
Q 003208 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
||| .+++++-++.+.||...... ..+|.| ..+.+++.+|.+.|+++.|+. |.++|++|+.
T Consensus 106 ------Png----~~fav~~gn~lqiw~~P~~~--~~~~~p-----Fvl~r~~~g~fddi~si~Ws~---DSr~l~~gsr 165 (893)
T KOG0291|consen 106 ------PNG----KFFAVGCGNLLQIWHAPGEI--KNEFNP-----FVLHRTYLGHFDDITSIDWSD---DSRLLVTGSR 165 (893)
T ss_pred ------CCC----cEEEEEecceeEEEecCcch--hcccCc-----ceEeeeecCCccceeEEEecc---CCceEEeccc
Confidence 998 89999999999999986433 224555 778889999999999999999 9999999999
Q ss_pred CCcEEEEecCCCce--EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCC-CCCCccCCCCCC
Q 003208 156 DNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSS 232 (839)
Q Consensus 156 d~~i~vwd~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (839)
|.++++|++...+. ...+.+|...++ ...| ..+...+++-+.||.+.+|.....-..+... .....+.+....
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~Vv-acfF---~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYVV-ACFF---GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcceE-EEEe---ccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 99999999987665 344445554433 3333 5677789999999999999987221000000 000000000000
Q ss_pred CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
.+..-+.-.........+-+......|++.+|++..+.|+++-..|...++.+..... +. .+.--..+|.
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-----ih-----~LSis~~~I~ 311 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-----IH-----SLSISDQKIL 311 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-----EE-----Eeecccceee
Confidence 0000000000000011222333347899999999999999999999999999988654 22 3333456788
Q ss_pred EeEEC--CCEEEEEeCC-CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCC
Q 003208 313 DCCLT--DSFIITAGED-CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLES 387 (839)
Q Consensus 313 ~~~~~--~~~l~s~~~d-g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~ 387 (839)
.+.|+ |++++.|+.. |.+.||+. ....+.+..+|.. .+.+++++|||++++||+.||+|++||.+. -+..++.
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt- 389 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT- 389 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-
Confidence 99998 8999888765 89999999 6777888889998 599999999999999999999999999854 4444444
Q ss_pred CCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEecCCCCceeEEEeeecCCCc
Q 003208 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMP 466 (839)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 466 (839)
.|...|+.+.|...+. ++.++-+|.+..|++..-.. -+.+..+...+
T Consensus 390 -----------------------------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~Q 437 (893)
T KOG0291|consen 390 -----------------------------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQ 437 (893)
T ss_pred -----------------------------cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCcee
Confidence 3446799999999875 55556799998777755433 24556677778
Q ss_pred eEEeeecCCCCCCCCCCCcEEEEeCCCc-cEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCC
Q 003208 467 IICMDLLSNEPKYPCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545 (839)
Q Consensus 467 v~~~~~~~~~~~~~~~~~~~l~~g~~dg-~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 545 (839)
..|+++.+++ .++..|+.|. .|.+|+++++++.. ...+|++.+.+ .++++++..|++++.|.
T Consensus 438 fscvavD~sG--------elV~AG~~d~F~IfvWS~qTGqllD-------iLsGHEgPVs~--l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 438 FSCVAVDPSG--------ELVCAGAQDSFEIFVWSVQTGQLLD-------ILSGHEGPVSG--LSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeEEEEcCCC--------CEEEeeccceEEEEEEEeecCeeee-------hhcCCCCccee--eEEccccCeEEeccccc
Confidence 8889887765 7888888775 89999999987543 22356666555 57999999999999999
Q ss_pred cEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeec
Q 003208 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEV 625 (839)
Q Consensus 546 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~ 625 (839)
+|++||+-.... .+.++ .+...++.++|+|||+-||++..||.|.+||........ .......+
T Consensus 501 TVRiW~if~s~~-------------~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~-~IdgrkD~ 564 (893)
T KOG0291|consen 501 TVRIWDIFSSSG-------------TVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG-SIDGRKDL 564 (893)
T ss_pred eEEEEEeeccCc-------------eeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec-cccchhhc
Confidence 999999976532 11122 246679999999999999999999999999998642211 00000111
Q ss_pred Ccce----ee--ec-ccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCC
Q 003208 626 SPLN----YF--KG-AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (839)
Q Consensus 626 ~~~~----~~--~~-~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 673 (839)
.+.+ .+ ++ +.+ ...|.|+++ .|+.+++++|.-..||+|++...-
T Consensus 565 ~~gR~~~D~~ta~~sa~~-K~Ftti~yS---aDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKG-KTFTTICYS---ADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cccccccceeehhhcccC-CceEEEEEc---CCCCEEEecCCcccEEEEECchhh
Confidence 1111 11 11 222 679999999 899999999999999999998753
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-42 Score=326.05 Aligned_cols=319 Identities=20% Similarity=0.297 Sum_probs=273.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~- 93 (839)
|.++|.|++|+ |+ +..|++|+ |.++|+||+.+..++.+.+.|.. .|.+++|+ ||| ..|+.
T Consensus 114 H~e~Vl~~~fs--p~----g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvaws-------PDg----k~iASG 175 (480)
T KOG0271|consen 114 HGEAVLSVQFS--PT----GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWS-------PDG----KKIASG 175 (480)
T ss_pred CCCcEEEEEec--CC----CceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEEC-------CCc----chhhcc
Confidence 88999999999 99 89999999 89999999999999999998765 89999999 999 45555
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc--CCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~--~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+-+|+|++||.++++ +....+.+|..+|++++|.|.. +...+||+++.||.|+|||+..++++.
T Consensus 176 ~~dg~I~lwdpktg~--------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQ--------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred ccCCeEEEecCCCCC--------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE
Confidence 459999999988754 5567889999999999998853 456799999999999999999999999
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (839)
.+.+|..+ +.++.+ ....+|++|+.|++|++|+.. .+++...
T Consensus 242 ~lsgHT~~-VTCvrw----GG~gliySgS~DrtIkvw~a~---------------------------------dG~~~r~ 283 (480)
T KOG0271|consen 242 TLSGHTAS-VTCVRW----GGEGLIYSGSQDRTIKVWRAL---------------------------------DGKLCRE 283 (480)
T ss_pred EeccCccc-eEEEEE----cCCceEEecCCCceEEEEEcc---------------------------------chhHHHh
Confidence 98877654 455665 345699999999999999988 7888999
Q ss_pred EecCCCCeEEEEEc-----------CCC-------------------------CEEEEEeCCCcEEEEEcccCccCCCCC
Q 003208 252 LVGHEGSIFRIEWS-----------SCG-------------------------SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 252 ~~~h~~~V~~l~~~-----------~~~-------------------------~~l~s~s~d~~i~iwd~~~~~~~~~~~ 295 (839)
++||...|+.|+.+ |.+ +.|++|++|.++.+|+....+.
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----- 358 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----- 358 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----
Confidence 99999999999887 222 3599999999999999876543
Q ss_pred ceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcE
Q 003208 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (839)
Q Consensus 296 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i 372 (839)
++ ..+.+|..-|..+.|+ +.++++++.|..|++|+- +|+.+..+++|-+ +|..++|+.|.++|++|+.|.++
T Consensus 359 --pi--~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 359 --PI--TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred --ch--hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcCCCceE
Confidence 22 2788999999999999 589999999999999999 9999999999999 79999999999999999999999
Q ss_pred EEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEE
Q 003208 373 KVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (839)
Q Consensus 373 ~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~ 444 (839)
++|+++.+ ..+.+. +|.+.|.++.++|||..++++....+++
T Consensus 434 Kvw~V~tkKl~~DLp------------------------------Gh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDLP------------------------------GHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeeeeeecccCC------------------------------CCCceEEEEEecCCCceeecCCCceEEE
Confidence 99999663 233333 4446799999999999998887666653
No 9
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-40 Score=352.71 Aligned_cols=663 Identities=29% Similarity=0.420 Sum_probs=446.3
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCcc--ce-eeEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVST--RV-TFEV 91 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~--~~-~~~l 91 (839)
.+.+|+++.++. ..||++|+++.+.+||+.++.++..+..++..++| . +.++ -+ ..++
T Consensus 5 s~~~~l~~~~~~--------~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~-------~e~~~~l~~~~~v 65 (967)
T KOG0974|consen 5 SSLGPLNLPQLV--------SDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----R-------GEGKVKLLSGKIV 65 (967)
T ss_pred cccccccchhhc--------cceeeecCCCceEEeeCCchhHhhhhhhhcccccc----c-------ccccceeccceEE
Confidence 467888888887 36999999999999999999999988887776677 2 2210 00 0222
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+++.-..+..=+. ....+..-.+||....+.- +...++.+..++.+.+||...+..+.
T Consensus 66 ~~~~~~~v~~~~~-------------------~~~~~~~~s~wi~g~~l~~---e~k~i~l~~~~ns~~i~d~~~~~~~~ 123 (967)
T KOG0974|consen 66 TCAKSDEVYVKEA-------------------SNQIIERFSDWIFGAKLFE---ENKKIALVTSRNSLLIRDSKNSSVLS 123 (967)
T ss_pred EEEeecceeecch-------------------hhhhhhhccccccccchhh---hcceEEEEEcCceEEEEecccCceeh
Confidence 2222222221111 1223344567888777666 77888999999999999999999999
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (839)
.+...+++..+++..+.++++..++++|+..+.|.+|++. ....+. .
T Consensus 124 ~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~--------------------------------~dn~p~-~ 170 (967)
T KOG0974|consen 124 KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH--------------------------------EDNKPI-R 170 (967)
T ss_pred hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc--------------------------------ccCCcc-e
Confidence 9999999999999999999999999999999999999987 022333 6
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEE
Q 003208 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (839)
Q Consensus 252 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~ 331 (839)
+.||++.|+.+.++.+|++++++|+|+++|+|++++.+.. . ....+|+.+||.+.|.++.++|+++|.+++
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~-----~----~~~fgHsaRvw~~~~~~n~i~t~gedctcr 241 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL-----G----CTGFGHSARVWACCFLPNRIITVGEDCTCR 241 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-----C----cccccccceeEEEEeccceeEEeccceEEE
Confidence 8899999999999999999999999999999999997652 1 378899999999999999999999999999
Q ss_pred EEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccc
Q 003208 332 VWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (839)
Q Consensus 332 vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (839)
+|+.++..+..+..|.++.|+.++..++...++|++.|+.+++|++.+..... +.. .......+..
T Consensus 242 vW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~---~~~--------~~~~~~s~~k--- 307 (967)
T KOG0974|consen 242 VWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG---HVE--------QSSLLSSIVK--- 307 (967)
T ss_pred EEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc---cee--------eeeeecchhh---
Confidence 99999999999999999999999999999999999999999999985432211 110 0000110100
Q ss_pred eeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCC-CCCCCCCCcEEEEe
Q 003208 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGIDDWVALG 490 (839)
Q Consensus 412 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~l~~g 490 (839)
.....|.....++.....+..+ .+... ..| .++..+...... ...+...+.+++.+
T Consensus 308 ----------l~~~~f~k~~~~~~~~~~~~~~--~~~~~--~~~---------~~l~~~~~~s~~~i~~~~~~~~~v~~~ 364 (967)
T KOG0974|consen 308 ----------LKDDQFVKCDTLLNFANHGGKL--SILGN--KGE---------KELITFESDSMLRIIFSCTNDDWVAHM 364 (967)
T ss_pred ----------hcceeeeehHHHHHHHhcCCeE--eeccc--ccc---------cceeeeeeccCccceehccccceeeec
Confidence 0011122212222222222210 00000 011 111111111111 22223445778888
Q ss_pred CCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceee
Q 003208 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (839)
Q Consensus 491 ~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 570 (839)
+..+.+.+..++.....+...+..++......+.... .+..+=..+|..++|......+.. .+...+.
T Consensus 365 ~~k~~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~--------~~~~~~~~~g~~~~r~~~~~~~~~----ad~~~i~ 432 (967)
T KOG0974|consen 365 SNKGDIYVAWHQNTIVITTSSLHRKLSANPISQVCEA--------SYVASKLIDGSIQVRNLSGSLESF----ADVLNIR 432 (967)
T ss_pred cCCCcEEEEEeecccCccchhHHHHHhhCcccceeee--------eeehhhccCCcchhhhhhcccccc----cceeEEe
Confidence 8888888776654322222211112222222221111 122233446677777654332211 1122233
Q ss_pred eeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccC
Q 003208 571 LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS 650 (839)
Q Consensus 571 ~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~ 650 (839)
....|......++.|+.-.+.+..++.|+.-|.+.+|++...- ..... ..+..|..++++++.+....+
T Consensus 433 ~~~~f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~------~~~~~-----~~~~~~~~~~~~si~~~~~kd 501 (967)
T KOG0974|consen 433 SLKEFRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPN------DDIVL-----SLSRSHELDTGSSITCIRSKD 501 (967)
T ss_pred eeeeeccccCCCCcceecccCcceEEEccCcCcEEEecCCCCC------cccee-----eccCcccccccccEEEEecCC
Confidence 3334444556778899988988999999999999999998641 11111 111145557788888888888
Q ss_pred CceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEEE
Q 003208 651 NQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQI 730 (839)
Q Consensus 651 ~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~ 730 (839)
+..++.++++||++.+..+.++.....+..+...+..+.+....++.+....+++.+++||.+..|++||++...+++.+
T Consensus 502 n~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~~i~~~ 581 (967)
T KOG0974|consen 502 NSAIFMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWKGNLLIVGFYSTSFILWNETNETPIFET 581 (967)
T ss_pred CcEEEEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCCCceEEEEEEeccceEeccccCceeEEE
Confidence 89999999999999999999987654444444444444444445555555667889999999999999999999999999
Q ss_pred eeCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEeccccccccccccccC
Q 003208 731 PCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL 810 (839)
Q Consensus 731 ~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~~~~~~~~~~ 810 (839)
.|||.||.|+|... .....++.......+++...-.. .. ...+..+-|+|+|+++.|++-++.. .-.++
T Consensus 582 ~cGg~hr~wal~g~---t~~~~~~re~~~~~~i~~~~~~~--~~--s~~~~nglh~~~irai~~~~~~ttv----~~~~~ 650 (967)
T KOG0974|consen 582 YCGGSHRIWALNGS---TDNQFNFREIASSQLIRQKIDNL--SR--NSWISNGLHGREIRAISFSPYSTTV----SLDEH 650 (967)
T ss_pred EeCCeeEEeecCCc---cccceeeeecccccEEEEEeecc--cc--cccccCCCCCCceeeeEecccccce----ecccC
Confidence 99999999999743 23344554444444444210000 11 1245568999999999998743221 11235
Q ss_pred CCceEEEeccCCCeEEEEEee
Q 003208 811 NKSSWIATGCEDGTVRLTRYA 831 (839)
Q Consensus 811 ~~~~~i~tg~eD~ti~iw~~~ 831 (839)
-++..++++++|+++++-.+.
T Consensus 651 ~~~t~~~~a~~~~~~~l~sv~ 671 (967)
T KOG0974|consen 651 LSGSAVRSASCDGNIKLISVI 671 (967)
T ss_pred CcceeEEeeeccccceeEEEE
Confidence 678999999999999997654
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-42 Score=324.68 Aligned_cols=325 Identities=18% Similarity=0.270 Sum_probs=267.4
Q ss_pred EeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEE
Q 003208 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (839)
Q Consensus 60 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (839)
+.+| +.+|.+++|+ |+|. .+++.+||.++|+||+.+ ..+.++.++|..||.|++
T Consensus 111 ~~GH-~e~Vl~~~fs-------p~g~---~l~tGsGD~TvR~WD~~T---------------eTp~~t~KgH~~WVlcva 164 (480)
T KOG0271|consen 111 IAGH-GEAVLSVQFS-------PTGS---RLVTGSGDTTVRLWDLDT---------------ETPLFTCKGHKNWVLCVA 164 (480)
T ss_pred cCCC-CCcEEEEEec-------CCCc---eEEecCCCceEEeeccCC---------------CCcceeecCCccEEEEEE
Confidence 3444 4579999999 8884 666667899999999997 457889999999999999
Q ss_pred EeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeecc--CCccceEEEEeecCCeEEEEEeecccccc
Q 003208 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG--DNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (839)
Q Consensus 140 ~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~l~sg~~dg~i~vw~~~~~~~~~ 217 (839)
|+| |+..||+|+.||+|++||..+++++...-..++..+.++++.. ..+...++|+++.||.|+|||+.
T Consensus 165 wsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~------ 235 (480)
T KOG0271|consen 165 WSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK------ 235 (480)
T ss_pred ECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc------
Confidence 999 9999999999999999999998876544333333455555532 34566799999999999999998
Q ss_pred CCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCce
Q 003208 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 297 (839)
.+.++..+.||+.+|+|++|--+| +|+++|.|++|++|+...+.. .+
T Consensus 236 ---------------------------~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~-----~r 282 (480)
T KOG0271|consen 236 ---------------------------LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL-----CR 282 (480)
T ss_pred ---------------------------CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH-----HH
Confidence 788899999999999999997554 899999999999999988766 33
Q ss_pred eeeceEeeccccceEEeEEC-------------CC-------------------------EEEEEeCCCeEEEEcC--CC
Q 003208 298 EVGSSVLYGHNARVWDCCLT-------------DS-------------------------FIITAGEDCTCRVWGS--DG 337 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~-------------~~-------------------------~l~s~~~dg~i~vw~~--~~ 337 (839)
.+.+|...|..++.+ ++ .+++|+.|.++.+|+. ..
T Consensus 283 -----~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 283 -----ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred -----hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 788999999888765 22 4999999999999998 56
Q ss_pred ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCcCccCcCCCCcccccCCCcceEEeecCCCccceeecc
Q 003208 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (839)
Q Consensus 338 ~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (839)
+++.++.+|.. -|..+.|+||++++++++.|..|++|+. .++.+.++++|.
T Consensus 358 kpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv--------------------------- 409 (480)
T KOG0271|consen 358 KPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV--------------------------- 409 (480)
T ss_pred cchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc---------------------------
Confidence 78999999998 6999999999999999999999999998 457777777776
Q ss_pred CCCcceEEEEEecCCeEEEEec-cceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCcc
Q 003208 417 SKSEYVRCLHLTSEDTLYIATN-HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN 495 (839)
Q Consensus 417 ~~~~~v~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 495 (839)
..|..++++.|.+++++++ +..+..|++... +...-+.+ +..++++++.++++ ..+++|+.|..
T Consensus 410 ---~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---Kl~~DLpG-h~DEVf~vDwspDG--------~rV~sggkdkv 474 (480)
T KOG0271|consen 410 ---AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---KLKQDLPG-HADEVFAVDWSPDG--------QRVASGGKDKV 474 (480)
T ss_pred ---ceeEEEEeccCccEEEEcCCCceEEEEEeeee---eecccCCC-CCceEEEEEecCCC--------ceeecCCCceE
Confidence 5699999999998888765 555655555432 21122223 47789999997765 89999999999
Q ss_pred EEEEE
Q 003208 496 MTIVR 500 (839)
Q Consensus 496 i~l~~ 500 (839)
+++|.
T Consensus 475 ~~lw~ 479 (480)
T KOG0271|consen 475 LRLWR 479 (480)
T ss_pred EEeec
Confidence 99994
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=325.11 Aligned_cols=476 Identities=19% Similarity=0.266 Sum_probs=340.4
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.++++++.-.|.+||+.++.. ...-....-...|+|++-+| +..+||.|..||.|++|+..+..
T Consensus 35 r~va~~a~E~vn~WdlRtge~-------------~~~l~~~~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~ 98 (888)
T KOG0306|consen 35 RAVAVSALEQVNIWDLRTGEI-------------EKKLILLKKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEE 98 (888)
T ss_pred cEEEEeccccEeEEeeecchh-------------hhhhhhhcccceEEEeeccC---CcceEEEEecCceEEeeccCCCc
Confidence 788888888999999997531 11111122335799999988 88899999999999999999888
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
.+.++.+|... +..+.| +..|..|++|+.|+.|.+||+- ...-
T Consensus 99 ~~~tfngHK~A-Vt~l~f---d~~G~rlaSGskDt~IIvwDlV---------------------------------~E~G 141 (888)
T KOG0306|consen 99 ILITFNGHKAA-VTTLKF---DKIGTRLASGSKDTDIIVWDLV---------------------------------GEEG 141 (888)
T ss_pred eeeeecccccc-eEEEEE---cccCceEeecCCCccEEEEEec---------------------------------ccee
Confidence 88888777654 555665 6889999999999999999998 5667
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCC
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg 328 (839)
+..+.||++.|+..-|..+.++++++|.|+.|++||+.+..+ .+ +...|...+|.+++.++.+++++.|+
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-----f~-----Thvd~r~Eiw~l~~~~~~lvt~~~ds 211 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-----FE-----THVDHRGEIWALVLDEKLLVTAGTDS 211 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee-----ee-----EEecccceEEEEEEecceEEEEecCC
Confidence 788999999999999998889999999999999999999876 33 78899999999999999999999999
Q ss_pred eEEEEcCC----C---------ceEEEe-ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-Cc-----c---Cc
Q 003208 329 TCRVWGSD----G---------KQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LP-----G---SL 385 (839)
Q Consensus 329 ~i~vw~~~----~---------~~~~~~-~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~-----~---~~ 385 (839)
.+++|++. . +...++ +...++ ...++..++++++++-+.|..+.++.+... .+ + ..
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 99999981 1 011111 222333 445677788899999999999999988431 00 0 00
Q ss_pred CCC------Ccccc-------------------------------------cCCCcceEEeecCCC--c----cceeecc
Q 003208 386 ESH------PEAKE-------------------------------------FNGRTEIFSIKIPNF--S----EQIRLTD 416 (839)
Q Consensus 386 ~~~------~~~~~-------------------------------------~~~~~~~~~~~~~~~--~----~~~~~~~ 416 (839)
..+ ..++. .+...+.+.+..... + .......
T Consensus 291 Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~ 370 (888)
T KOG0306|consen 291 KKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIG 370 (888)
T ss_pred hhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeec
Confidence 000 00000 011122222221000 0 0112345
Q ss_pred CCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccE
Q 003208 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (839)
Q Consensus 417 ~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i 496 (839)
+|...|+.++++.+..++.+...+.+.+|+. ...+. +...... .+.+..+. |.++++++|...|.+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~---~t~kc--iRTi~~~-y~l~~~Fv--------pgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIKIWNR---DTLKC--IRTITCG-YILASKFV--------PGDRYIVLGTKNGEL 436 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEEEEEc---cCcce--eEEeccc-cEEEEEec--------CCCceEEEeccCCce
Confidence 7888899999999988888888888875544 33332 2222322 34444443 456899999999999
Q ss_pred EEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccc
Q 003208 497 TIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (839)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (839)
.+|++....+..... .+++.+.. ...+||++.+++|+.|.+|++||...... .+......+.+...-+
T Consensus 437 ~vfdlaS~~l~Eti~-------AHdgaIWs--i~~~pD~~g~vT~saDktVkfWdf~l~~~---~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 437 QVFDLASASLVETIR-------AHDGAIWS--ISLSPDNKGFVTGSADKTVKFWDFKLVVS---VPGTQKKVLSLKHTRT 504 (888)
T ss_pred EEEEeehhhhhhhhh-------ccccceee--eeecCCCCceEEecCCcEEEEEeEEEEec---cCcccceeeeeccceE
Confidence 999998765443222 23444444 45789999999999999999999874332 0011111122222222
Q ss_pred cccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEE
Q 003208 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656 (839)
Q Consensus 577 ~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~ 656 (839)
..-...|.|+++||||++||+|=-|.+++||-++.- ...-.+. .|. -+|.++.++ +|++.++
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-------------KFflsLY-GHk-LPV~smDIS---~DSkliv 566 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-------------KFFLSLY-GHK-LPVLSMDIS---PDSKLIV 566 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-------------eeeeeec-ccc-cceeEEecc---CCcCeEE
Confidence 234677999999999999999999999999998842 2222333 554 799999999 8999999
Q ss_pred eecCcCcEEEEEEecC
Q 003208 657 STGGDGCICYLEYDKD 672 (839)
Q Consensus 657 s~~~Dg~i~iw~~~~~ 672 (839)
|+|.|.+|++|-++.+
T Consensus 567 TgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFG 582 (888)
T ss_pred eccCCCceEEeccccc
Confidence 9999999999987653
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=307.80 Aligned_cols=546 Identities=12% Similarity=0.125 Sum_probs=392.4
Q ss_pred EEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cCcEEE
Q 003208 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVK 100 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~ 100 (839)
-+.|+ +| |.-+++-.++.|.++|+.+.+. .++....+..|.+|+.+ |+| .++++. ..|...
T Consensus 19 nl~ft--~d----G~sviSPvGNrvsv~dLknN~S-~Tl~~e~~~NI~~ialS-------p~g----~lllavdE~g~~~ 80 (893)
T KOG0291|consen 19 NLVFT--KD----GNSVISPVGNRVSVFDLKNNKS-YTLPLETRYNITRIALS-------PDG----TLLLAVDERGRAL 80 (893)
T ss_pred cEEEC--CC----CCEEEeccCCEEEEEEccCCcc-eeEEeecCCceEEEEeC-------CCc----eEEEEEcCCCcEE
Confidence 57899 88 8899999999999999986543 45555556679999999 998 444444 467777
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce--------EEE
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--------ILE 172 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~--------~~~ 172 (839)
+.++... ..++.+. ....|.|+.|+| +|.++|.|. .+.+.||....... .++
T Consensus 81 lvs~~~r---------------~Vlh~f~-fk~~v~~i~fSP---ng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~ 140 (893)
T KOG0291|consen 81 LVSLLSR---------------SVLHRFN-FKRGVGAIKFSP---NGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRT 140 (893)
T ss_pred EEecccc---------------eeeEEEe-ecCccceEEECC---CCcEEEEEe-cceeEEEecCcchhcccCcceEeee
Confidence 7777531 2233332 457899999999 999998875 67899998754322 122
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
..++.. -+.++.| +.|..+|++|+.|-.+++|.++.. ..-....+
T Consensus 141 ~~g~fd-di~si~W---s~DSr~l~~gsrD~s~rl~~v~~~-------------------------------k~~~~~~l 185 (893)
T KOG0291|consen 141 YLGHFD-DITSIDW---SDDSRLLVTGSRDLSARLFGVDGN-------------------------------KNLFTYAL 185 (893)
T ss_pred ecCCcc-ceeEEEe---ccCCceEEeccccceEEEEEeccc-------------------------------cccceEec
Confidence 333333 3456666 688899999999999999999811 22346678
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC--C----------------CCC-c---eee--eceEeeccc
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--D----------------SDS-I---EEV--GSSVLYGHN 308 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~----------------~~~-~---~~~--~~~~~~~h~ 308 (839)
.||++.|.+.-|..+...+++.+.||.+.+|........ . ... . ... +...+....
T Consensus 186 ~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 186 NGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred cCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 899999999999999999999999999999988732110 0 000 0 000 011222334
Q ss_pred cceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCC-CcEEEEecCCc-Ccc
Q 003208 309 ARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-SAIKVHQFQAF-LPG 383 (839)
Q Consensus 309 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d-g~i~iw~~~~~-~~~ 383 (839)
..|++.+|+ -+.|++|-..|...++++ +-.+++.+.-... +|..++|+..|.+|+.|+.. |.+-+|+++.. .+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence 779999999 378999999999999999 6678888877666 69999999999999998875 89999999652 222
Q ss_pred CcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEE-eccceEEEEEecCCCCceeEEEeeec
Q 003208 384 SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVS 462 (839)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~~~~~ 462 (839)
. .++|...+++++++|||.++++ +.+|++..|+ .....+...+ .+
T Consensus 345 K------------------------------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn---~~SgfC~vTF-te 390 (893)
T KOG0291|consen 345 K------------------------------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN---TQSGFCFVTF-TE 390 (893)
T ss_pred e------------------------------ccccccceeeEEECCCCcEEEeccCCCcEEEEe---ccCceEEEEe-cc
Confidence 2 2345567999999999977665 5688886554 4333332233 34
Q ss_pred CCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeC
Q 003208 463 EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD 542 (839)
Q Consensus 463 ~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 542 (839)
+...++.+.+...+ +.+++.+-||+|+.||+.....-. ++..+.+.+ ....+..|.|.++++|+
T Consensus 391 Hts~Vt~v~f~~~g--------~~llssSLDGtVRAwDlkRYrNfR------Tft~P~p~Q--fscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 391 HTSGVTAVQFTARG--------NVLLSSSLDGTVRAWDLKRYRNFR------TFTSPEPIQ--FSCVAVDPSGELVCAGA 454 (893)
T ss_pred CCCceEEEEEEecC--------CEEEEeecCCeEEeeeecccceee------eecCCCcee--eeEEEEcCCCCEEEeec
Confidence 46678888776654 899999999999999997654221 122222222 22245667799999999
Q ss_pred CCC-cEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccc
Q 003208 543 PKG-RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVAL 621 (839)
Q Consensus 543 ~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~ 621 (839)
.|. .|.+|++.++.. .....+|.++|.+++|+|++..||+||.|.+|++|++-...
T Consensus 455 ~d~F~IfvWS~qTGql---------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-------- 511 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQL---------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-------- 511 (893)
T ss_pred cceEEEEEEEeecCee---------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--------
Confidence 888 599999998863 12345999999999999999999999999999999987521
Q ss_pred eeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeee--------------
Q 003208 622 HVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKEL-------------- 687 (839)
Q Consensus 622 ~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~-------------- 687 (839)
...+++. -. .-|+.++|. |+++.|+.+.-||.|.+||++...+.-.+.+.+.+..-
T Consensus 512 -~~vEtl~---i~---sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 512 -GTVETLE---IR---SDVLAVSFR---PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred -ceeeeEe---ec---cceeEEEEc---CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 1222222 12 359999999 89999999999999999999887554333333332210
Q ss_pred -eeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEE
Q 003208 688 -SLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQ 729 (839)
Q Consensus 688 -~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~ 729 (839)
-+++.+.+ ++|+.++++|..+..+.+|+..++.-+-.
T Consensus 582 ~K~Ftti~y-----SaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 582 GKTFTTICY-----SADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred CCceEEEEE-----cCCCCEEEecCCcccEEEEECchhheeee
Confidence 01222211 56789999999999999999988875544
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-40 Score=315.43 Aligned_cols=279 Identities=22% Similarity=0.320 Sum_probs=253.8
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
.+||+.+.|+ .| +..|++|+ +|.++||+..++..+.+|.+|.. .|.++.|+|- .++. .+.+++.
T Consensus 175 ~rPis~~~fS--~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-~v~~~~fhP~-----~~~~---~lat~s~ 239 (459)
T KOG0272|consen 175 TRPISGCSFS--RD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-RVGAAVFHPV-----DSDL---NLATASA 239 (459)
T ss_pred CCcceeeEee--cC----CCeEEEeecCCceeEeecCCcceeEEEecccc-ceeeEEEccC-----CCcc---ceeeecc
Confidence 4789999999 98 88999999 99999999999999999999877 6999999932 1131 5666677
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~ 175 (839)
||++++|+++. -.++..+.+|...|..++|+| +|++|+|++.|.+-++||++++..+...++
T Consensus 240 Dgtvklw~~~~---------------e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QEG 301 (459)
T KOG0272|consen 240 DGTVKLWKLSQ---------------ETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQEG 301 (459)
T ss_pred CCceeeeccCC---------------CcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhcc
Confidence 99999999985 357889999999999999999 999999999999999999999988887777
Q ss_pred CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
|... ++++.| .++|.++++|+.|..-+|||++ +++.+..+.||
T Consensus 302 Hs~~-v~~iaf---~~DGSL~~tGGlD~~~RvWDlR---------------------------------tgr~im~L~gH 344 (459)
T KOG0272|consen 302 HSKG-VFSIAF---QPDGSLAATGGLDSLGRVWDLR---------------------------------TGRCIMFLAGH 344 (459)
T ss_pred cccc-cceeEe---cCCCceeeccCccchhheeecc---------------------------------cCcEEEEeccc
Confidence 7664 677777 5899999999999999999999 89999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEE
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRV 332 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~v 332 (839)
..+|.+|+|+|+|-.|+|||.|++++|||++..... ..+.+|..-|..++|+ +.+|+|++.|+++++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l----------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL----------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccc----------eecccccchhhheEecccCCeEEEEcccCcceee
Confidence 999999999999999999999999999999986652 4888999999999998 589999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
|.. +..+++.+.+|.++ |.++++++++.+++|++.|.++++|.
T Consensus 415 Ws~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 999 88999999999995 99999999999999999999999995
No 14
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.8e-35 Score=296.13 Aligned_cols=626 Identities=15% Similarity=0.203 Sum_probs=399.7
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~ 114 (839)
+.+++-|.+..|.+||..+...+..+.+|.. +|+|+.+- |+.+....++....|+.|++|.+....
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-~VnC~~~l-------~~s~~~a~~vsG~sD~~v~lW~l~~~~------ 90 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVA-RVNCVHWL-------PTSEIVAEMVSGDSDGRVILWKLRDEY------ 90 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCcc-ceEEEEEc-------ccccccceEEEccCCCcEEEEEEeehh------
Confidence 3577888899999999887767777787665 79999998 544222245666669999999998544
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc--eEEEEecCCc-eeEEEEeeccCCc
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPER-CLLYSMKLWGDNL 191 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~-~~~~s~~~~~~~~ 191 (839)
...+..+.+|...+.|+.=.+ ........|+.+.+||.+..+ +...+.-..+ .+..++.+.. .+
T Consensus 91 -------~~~i~~~~g~~~~~~cv~a~~-----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~ 157 (764)
T KOG1063|consen 91 -------LIKIYTIQGHCKECVCVVARS-----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NN 157 (764)
T ss_pred -------eEEEEeecCcceeEEEEEeee-----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cC
Confidence 677888888776665554322 222223679999999996555 2222221111 1122233322 34
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC--
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-- 269 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-- 269 (839)
+..+++.|+.+..|.++.-.. ...+.+..+.||++.|.+|+|...+.
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~-------------------------------d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSA-------------------------------DSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred CcEEEEecCcceEEEEeccCC-------------------------------cceeEEEEeeccchhhhhhhhhccCCCc
Confidence 455677788888887776430 04567888999999999999986443
Q ss_pred -EEEEEeCCCcEEEEEcccCccCC-----------CC-----Cceeee-----ceEeeccccceEEeEECC--CEEEEEe
Q 003208 270 -KLVSVSDDRSARIWEVRAEYWKD-----------SD-----SIEEVG-----SSVLYGHNARVWDCCLTD--SFIITAG 325 (839)
Q Consensus 270 -~l~s~s~d~~i~iwd~~~~~~~~-----------~~-----~~~~~~-----~~~~~~h~~~v~~~~~~~--~~l~s~~ 325 (839)
+|+|+|.|+.||||.+.-..... +. ....+. ...+.||...|.++.|++ ..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 78999999999999986543110 00 000110 023459999999999994 5799999
Q ss_pred CCCeEEEEcCCCc---e-----EEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCC
Q 003208 326 EDCTCRVWGSDGK---Q-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (839)
Q Consensus 326 ~dg~i~vw~~~~~---~-----~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 397 (839)
.|.++.+|..... - +..+.+..+ +-+...|+|+++.+++-+.-|..++|..+..
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~-GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~----------------- 348 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAG-GFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK----------------- 348 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeeccccccc-ceeeEEEcCCCCEEEEecccCcEEEEeccCc-----------------
Confidence 9999999998321 1 122222233 5889999999999999999999999983221
Q ss_pred cceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceE-EEEEecCCCCceeEEEeeec-CCCceEEeeecCC
Q 003208 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL-YHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSN 475 (839)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i-~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 475 (839)
..+. +.....+|.+.|+.+++.|.|.++.+....+- ..+.-+ .....|..+.+.+ ++..+.|+++.+.
T Consensus 349 -~~w~--------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 349 -TFWT--------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred -ccee--------eccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccC
Confidence 0111 11123456678999999999977776544333 222223 2333477765554 4667888877552
Q ss_pred CCCCCCCCCcEEEEeCCCccEEEEEEcC----------C-----C-C------CC--------cce-------e-----e
Q 003208 476 EPKYPCGIDDWVALGDGKGNMTIVRVVG----------D-----V-H------TP--------QLS-------F-----T 513 (839)
Q Consensus 476 ~~~~~~~~~~~l~~g~~dg~i~l~~~~~----------~-----~-~------~~--------~~~-------~-----~ 513 (839)
+-.+++|....-+++|+... + . . .| ... . +
T Consensus 419 --------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 419 --------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred --------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 25677777777778876411 0 0 0 00 000 0 0
Q ss_pred e----------------------Ee-----eccceeEEeeEEEeecCCCeEEEEeCCCC-----cEEEeeecCCCCcccc
Q 003208 514 F----------------------TW-----SAGIERQLLGTYWCKSLGHRFIFTADPKG-----RLKLWQLCDPFSSVCY 561 (839)
Q Consensus 514 ~----------------------~~-----~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~ 561 (839)
. .| ..++.-.+.+ ++.+|++++++++.... .|++|+..+....+.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~--l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~- 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYA--LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE- 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEE--EEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe-
Confidence 0 00 0011222333 46788899999987655 489999987753221
Q ss_pred cCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCcee
Q 003208 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (839)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt 641 (839)
..+|.-.||.|+|||||++|++.|+|.++.+|...++... ... ....+ .|. --|-
T Consensus 568 --------------L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~------e~~---fa~~k-~Ht-RIIW 622 (764)
T KOG1063|consen 568 --------------LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD------EFR---FACLK-AHT-RIIW 622 (764)
T ss_pred --------------ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch------hhh---hcccc-ccc-eEEE
Confidence 2369999999999999999999999999999998654211 001 11122 454 3477
Q ss_pred EEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEec
Q 003208 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (839)
Q Consensus 642 ~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~ 721 (839)
+..|+ +++.+++|+|||..+++|........ -...+..++-...+..+.+.+........+++.|+..+.+++|+.
T Consensus 623 dcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~-~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 623 DCSWS---PDEKYFATASRDKKVKVWEEPDLRDK-YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EcccC---cccceeEEecCCceEEEEeccCchhh-hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 77888 88899999999999999998876211 000111122122344444443322223457899999999999996
Q ss_pred cCccEEEEEeeCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEecccccc
Q 003208 722 ITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQV 801 (839)
Q Consensus 722 ~~~~~~~~~~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~ 801 (839)
....+.-++ ..|.. + .+.-..++|-..|+-++|.|. -
T Consensus 699 ~~~~~~~~~-------------------------------~~~~~---~------~~l~~~~~~~~aV~rl~w~p~---~ 735 (764)
T KOG1063|consen 699 KREHRQVTV-------------------------------GTFNL---D------TRLCATIGPDSAVNRLLWRPT---C 735 (764)
T ss_pred ccccccccc-------------------------------eeeee---c------cccccccChHHhhheeEeccc---c
Confidence 533321111 00000 0 011223689999999999964 1
Q ss_pred ccccccccCCCceEEEeccCCCeEEEEEee
Q 003208 802 GANVKKSALNKSSWIATGCEDGTVRLTRYA 831 (839)
Q Consensus 802 ~~~~~~~~~~~~~~i~tg~eD~ti~iw~~~ 831 (839)
+. +..+..++.-|+.|++|.++||.++.
T Consensus 736 ~~--~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 736 SD--DWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cc--ccccccceeEEeeecccceeEEeecc
Confidence 11 11223567889999999999999864
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8e-36 Score=272.77 Aligned_cols=284 Identities=17% Similarity=0.290 Sum_probs=246.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.+.|.++.|+ +| .+++++++ ||.+.|||..|...+..+.... ..|...+|+ |.| .+++++
T Consensus 54 H~~Ki~~~~ws--~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s-~WVMtCA~s-------PSg----~~VAcG 115 (343)
T KOG0286|consen 54 HLNKIYAMDWS--TD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-SWVMTCAYS-------PSG----NFVACG 115 (343)
T ss_pred cccceeeeEec--CC----cCeEEeeccCCeEEEEEcccccceeEEecCc-eeEEEEEEC-------CCC----CeEEec
Confidence 89999999999 99 78888877 9999999999998888888644 489999999 887 788888
Q ss_pred c-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 95 ~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
| |+...||++......+ .....+.+.+|++.+.|+.|.+ ++ .|+|++.|.++.+||+++++.+..+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------~~~v~r~l~gHtgylScC~f~d---D~-~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------NVRVSRELAGHTGYLSCCRFLD---DN-HILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccc---------cceeeeeecCccceeEEEEEcC---CC-ceEecCCCceEEEEEcccceEEEEe
Confidence 7 9999999998653111 1345678899999999999986 54 5779999999999999999999999
Q ss_pred ecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
.+|... +.++.+ +| +++.+++|+.|+..++||++ .+...+.|
T Consensus 183 ~GH~gD-V~slsl---~p~~~ntFvSg~cD~~aklWD~R---------------------------------~~~c~qtF 225 (343)
T KOG0286|consen 183 HGHTGD-VMSLSL---SPSDGNTFVSGGCDKSAKLWDVR---------------------------------SGQCVQTF 225 (343)
T ss_pred cCCccc-EEEEec---CCCCCCeEEecccccceeeeecc---------------------------------CcceeEee
Confidence 988765 456666 45 89999999999999999999 78899999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeE
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 330 (839)
.||+..|++|+|.|+|.-+++|++|+++|+||++.... +.. +....-..+|++++|+ |++|+.|..|.++
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-----~a~---ys~~~~~~gitSv~FS~SGRlLfagy~d~~c 297 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-----LAV---YSHDSIICGITSVAFSKSGRLLFAGYDDFTC 297 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-----Eee---eccCcccCCceeEEEcccccEEEeeecCCce
Confidence 99999999999999999999999999999999998765 111 1222334578999998 8999999999999
Q ss_pred EEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 331 ~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
.+||. .++.+..+.+|.++ |.++..+|||..++||+.|..+|||.
T Consensus 298 ~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence 99999 89999999999995 99999999999999999999999994
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=289.59 Aligned_cols=459 Identities=15% Similarity=0.216 Sum_probs=321.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
+...|-++.|+ |. .++++++- .|.|.|||.++-.++..+++.+- ||.+..|- +..+ -+++.+
T Consensus 12 rSdRVKsVd~H--Pt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-------aRkn---Wiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-------ARKN---WIVTGS 74 (794)
T ss_pred cCCceeeeecC--CC----CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheee-------eccc---eEEEec
Confidence 66789999999 98 78999988 99999999999999999998654 79988887 3321 556666
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-eEEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-~~~~~ 173 (839)
.|..|+||+..+ ++.++.+..|.+.|.+++.+| ...+++|+|.|-+|++||.+..- +.+++
T Consensus 75 DD~~IrVfnynt---------------~ekV~~FeAH~DyIR~iavHP---t~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 75 DDMQIRVFNYNT---------------GEKVKTFEAHSDYIRSIAVHP---TLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred CCceEEEEeccc---------------ceeeEEeeccccceeeeeecC---CCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 789999999987 778999999999999999999 99999999999999999998764 45556
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
++|.. .+..++| ++.|.+.+|+++-|++|++|++. ...+..++.
T Consensus 137 eGH~H-yVMqv~f--nPkD~ntFaS~sLDrTVKVWslg---------------------------------s~~~nfTl~ 180 (794)
T KOG0276|consen 137 EGHEH-YVMQVAF--NPKDPNTFASASLDRTVKVWSLG---------------------------------SPHPNFTLE 180 (794)
T ss_pred cCcce-EEEEEEe--cCCCccceeeeeccccEEEEEcC---------------------------------CCCCceeee
Confidence 66653 3555555 56778899999999999999998 778888999
Q ss_pred cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCe
Q 003208 254 GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCT 329 (839)
Q Consensus 254 ~h~~~V~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~ 329 (839)
||+..|+|+.+-+ |..+|+||++|.++++||..+..+ ++ ++.||...|..+.|+| ..++||++||+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-----V~-----TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-----VQ-----TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-----HH-----HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 9999999999987 447999999999999999999877 44 8999999999999996 68999999999
Q ss_pred EEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCcCccCcCCCCcccccCCCcceEEeecCC
Q 003208 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (839)
Q Consensus 330 i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (839)
+|||+. +-+...++....+ .+|+++-.+.+..++.|...|.|.+ .+ +..+...+.... .+-+....++.......
T Consensus 251 vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~g-KIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNG-KIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCc-cEEEEcCceeeeeecee
Confidence 999998 5555566655555 5999999988888888887777654 33 222222111100 01111111111111000
Q ss_pred C------------ccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCC
Q 003208 408 F------------SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN 475 (839)
Q Consensus 408 ~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 475 (839)
. +-.+..+..-+-....++.+|+|++++.+.+|.-.++... .|+.-..+. ++++.+.
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTal-----a~RnK~fG~------~~eFvw~ 396 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTAL-----ALRNKAFGS------GLEFVWA 396 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEee-----ehhhccccc------ceeEEEc
Confidence 0 0011112222234567888999999999999987655422 222211122 1222222
Q ss_pred CCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecC-CCeEEEEeCCCCcEEEeeecC
Q 003208 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCD 554 (839)
Q Consensus 476 ~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~~wd~~~ 554 (839)
.+.+..++-..++.|.++ .+.+... .+.... .+-.. .|.+|.. ..++.+++||.++
T Consensus 397 ------~dsne~avRes~~~vki~--knfke~k--si~~~~------------~~e~i~gg~Llg~-~ss~~~~fydW~~ 453 (794)
T KOG0276|consen 397 ------ADSNEFAVRESNGNVKIF--KNFKEHK--SIRPDM------------SAEGIFGGPLLGV-RSSDFLCFYDWES 453 (794)
T ss_pred ------CCCCeEEEEecCCceEEE--ecceecc--cccccc------------ceeeecCCceEEE-EeCCeEEEEEccc
Confidence 233667777778889888 2222111 111110 11122 3444444 4557899999887
Q ss_pred CCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
+.. +... .-..-.+.|+.+|.++++++.+. .+|+.++.
T Consensus 454 ~~l--------------VrrI----~v~~k~v~w~d~g~lVai~~d~S-fyil~~n~ 491 (794)
T KOG0276|consen 454 GEL--------------VRRI----EVTSKHVYWSDNGELVAIAGDDS-FYILKFNA 491 (794)
T ss_pred ceE--------------EEEE----eeccceeEEecCCCEEEEEecCc-eeEEEecH
Confidence 652 1111 11234678999999999987664 55555554
No 17
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.7e-33 Score=272.05 Aligned_cols=505 Identities=14% Similarity=0.191 Sum_probs=359.1
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-C--------CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-G--------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~--------~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
|...|.|++.+ || .-.+++|. . ..++|||..+-..+..+..++. .|.+++|++. ..|
T Consensus 103 H~ddikc~~vH--Pd----ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-GV~~vaFsk~-----~~G-- 168 (626)
T KOG2106|consen 103 HNDDIKCMAVH--PD----RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-GVTCVAFSKI-----NGG-- 168 (626)
T ss_pred CCCceEEEeec--CC----ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-cceeeeeccc-----CCC--
Confidence 77889999999 99 66777666 2 3699999888777777776666 5999999965 334
Q ss_pred eeeEEEEE---cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEe
Q 003208 87 VTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (839)
Q Consensus 87 ~~~~l~~~---~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd 163 (839)
.++++- .+..+.|||++.+. .....+.-++.|...+|+| .+.+++++++ .+.+.+|+
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~~---------------~~~~vk~sne~v~~a~FHP--td~nliit~G-k~H~~Fw~ 228 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKKA---------------KLGPVKTSNEVVFLATFHP--TDPNLIITCG-KGHLYFWT 228 (626)
T ss_pred --ceEEEecCCCccccchhhchhhh---------------ccCcceeccceEEEEEecc--CCCcEEEEeC-CceEEEEE
Confidence 444443 35789999998643 3334445667899999999 3556777776 68899999
Q ss_pred cCCCceEEE---EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEee
Q 003208 164 ISNSSIILE---VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (839)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (839)
.+.+...++ ++.+++..+.++.| .+ +.-+++|..+|.|.||+..
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F---~e-ngdviTgDS~G~i~Iw~~~----------------------------- 275 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTF---LE-NGDVITGDSGGNILIWSKG----------------------------- 275 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEE---cC-CCCEEeecCCceEEEEeCC-----------------------------
Confidence 988876554 45666778888888 33 4468999999999999987
Q ss_pred cccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCE
Q 003208 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (839)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 320 (839)
..+..+....|.+.|++++.-.+|. |+||+.|+.|..||- .- +.+.+..+....++|..++-...-
T Consensus 276 ----~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-~y--------~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 276 ----TNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-NY--------RKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ----CceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc-cc--------cccccccCchhcCCeeEEecCCCc
Confidence 4454555559999999999999886 556999999999992 22 222222455556677777766333
Q ss_pred EEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcce
Q 003208 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (839)
Q Consensus 321 l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (839)
|+.|...+.|..=.+.........+|.. ..|.++.+|+...++|++.|+.+++|+ +.+ .+
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-~~k------------------~~ 401 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-DHK------------------LE 401 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc-CCc------------------ee
Confidence 7777777776665664444555667777 699999999999999999999999999 221 12
Q ss_pred EEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCC
Q 003208 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (839)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (839)
|+... .++..|+.|.|.|.+.+++..|..+.++...... ..+ .. +..++.++..++++
T Consensus 402 wt~~~-------------~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l---v~~-~~-d~~~ls~v~ysp~G---- 459 (626)
T KOG2106|consen 402 WTKII-------------EDPAECADFHPSGVVAVGTATGRWFVLDTETQDL---VTI-HT-DNEQLSVVRYSPDG---- 459 (626)
T ss_pred EEEEe-------------cCceeEeeccCcceEEEeeccceEEEEeccccee---EEE-Ee-cCCceEEEEEcCCC----
Confidence 33221 2468999999999999999999887665543211 111 12 26788898887765
Q ss_pred CCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCccc
Q 003208 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (839)
Q Consensus 481 ~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 560 (839)
.++|+|+.|+.|++|.++.+..+ ....-++.. ..+.. +.+|+|+++|.+-+.|-.|..|......+...
T Consensus 460 ----~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~~g---s~ith--LDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 460 ----AFLAVGSHDNHIYIYRVSANGRK--YSRVGKCSG---SPITH--LDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred ----CEEEEecCCCeEEEEEECCCCcE--EEEeeeecC---ceeEE--eeecCCCceEEeccCceEEEEEccccCcccce
Confidence 89999999999999999765432 111112221 22222 56899999999999999999994433322111
Q ss_pred ccCCccceeeeeeccc---cccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCC
Q 003208 561 YESSKTNNVFLVAEFS---SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGI 637 (839)
Q Consensus 561 ~~~~~~~~~~~~~~~~---~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 637 (839)
.+...-.+-.+.-.|. ..|...|.+++-|.+.++||+|+..|+|++|..+... ...+...+ +.|+
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s----------~rA~~he~-~ghs- 596 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS----------PRAPSHEY-GGHS- 596 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC----------Ccccceee-cccc-
Confidence 1111111112222222 4678889999999999999999999999999887421 11122222 3666
Q ss_pred CceeEEEEEeccCCceEEEeecCcCcEEEEEE
Q 003208 638 STVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (839)
Q Consensus 638 ~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~ 669 (839)
..|++|+|+ .+...|+++|.|..|..|++
T Consensus 597 ~~vt~V~Fl---~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFL---CKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEe---eCCceEEecCCCceEEEEEe
Confidence 789999999 66678999999999999986
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.4e-34 Score=288.38 Aligned_cols=523 Identities=13% Similarity=0.126 Sum_probs=344.1
Q ss_pred CccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee---CCeeEEEECCCCeeeeEEeeecCceEEeEEec
Q 003208 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (839)
Q Consensus 5 ~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~---~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 74 (839)
++.+++.+... +-.++|||||+ ++ |+|+++|. .+.++||++.....+.+|..|+- .|+|++|+
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS--~~----GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-~vtcvaFs 131 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFS--QN----GRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-NVTCVAFS 131 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEc--CC----CcEEEecccCCCccceeeeeccccchhhhhhccc-cceeeeec
Confidence 35566665543 34589999999 99 99999998 37899999999888999987765 59999999
Q ss_pred ccccccCCCccceeeEEEEEc--CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 75 FINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
|.++ +++.++. |-.|.+||+.... ...-..-...|..++|+. ++.|++|
T Consensus 132 -------p~~k---yvvSVGsQHDMIVnv~dWr~N~----------------~~asnkiss~Vsav~fsE---dgSYfvT 182 (1080)
T KOG1408|consen 132 -------PGNK---YVVSVGSQHDMIVNVNDWRVNS----------------SGASNKISSVVSAVAFSE---DGSYFVT 182 (1080)
T ss_pred -------CCCc---EEEeeccccceEEEhhhhhhcc----------------cccccccceeEEEEEEcc---CCceeee
Confidence 7773 4444444 5678899887432 111123346789999999 9999999
Q ss_pred EeCCCcEEEEecCCCceEE-------------EEe--------cCCc---eeEEEEee----------------------
Q 003208 153 GCSDNSIRVWDISNSSIIL-------------EVH--------SPER---CLLYSMKL---------------------- 186 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~-------------~~~--------~~~~---~~~~s~~~---------------------- 186 (839)
.+ ...|++|.++.++... .+. .... ...|++..
T Consensus 183 ~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTT 261 (1080)
T KOG1408|consen 183 SG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTT 261 (1080)
T ss_pred ee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcc
Confidence 87 5789999997655210 000 0000 01111110
Q ss_pred --ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEE
Q 003208 187 --WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (839)
Q Consensus 187 --~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 264 (839)
+...-...+|+.|+.+|.|++|+..+-+...... ....+...+..+-.. .......-.+.-..-.++.|
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlp-------r~halg~d~a~~~q~--~~~~s~~~~a~fPD~IA~~F 332 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLP-------RSHALGSDTANLSQP--EPKNSESSPAIFPDAIACQF 332 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchhhhccccc-------cccccccchhhcccc--cccccccCcccCCceeEEEe
Confidence 0011245689999999999999987433221110 000000000000000 00000000111122346779
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-------------CCEEEEEeCCCeEE
Q 003208 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------------DSFIITAGEDCTCR 331 (839)
Q Consensus 265 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------------~~~l~s~~~dg~i~ 331 (839)
++...+|.+...|..+++||+++... +... ..+.-|...||.+.-- +..++|++.|++||
T Consensus 333 det~~klscVYndhSlYvWDvrD~~k-----vgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLYVWDVRDVNK-----VGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred cCCCceEEEEEcCceEEEEecccccc-----ccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 99999999999999999999998654 1111 3566788888887532 25799999999999
Q ss_pred EEcCCC----ceEEE---------e-------------------------ecccCCceEEEEEccCCCEEEEEeCCCcEE
Q 003208 332 VWGSDG----KQLKM---------I-------------------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (839)
Q Consensus 332 vw~~~~----~~~~~---------~-------------------------~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~ 373 (839)
+|++.+ ...+. + ..... ++.+++++|+|+.|++|..-|.++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~-G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF-GFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc-ceEEEEECCCcceecccCccCceE
Confidence 999843 11000 0 00112 589999999999999999999999
Q ss_pred EEecCC-cCccCcCCCCccc---ccC-------------CCcceEEeecCCCccceeeccCCCcceEEEEEecCC---eE
Q 003208 374 VHQFQA-FLPGSLESHPEAK---EFN-------------GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED---TL 433 (839)
Q Consensus 374 iw~~~~-~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~ 433 (839)
+|++.. ...-.++.|...+ .++ .+.-+...........+..+++|...|+++.|...| ++
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 999955 4444555555322 111 111222222333334566778899999999999876 56
Q ss_pred EEEeccceEEEEEecC-CCCce-eEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcce
Q 003208 434 YIATNHGYLYHTKLCD-MDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (839)
Q Consensus 434 ~~~~~~g~i~~~~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~ 511 (839)
+..+.+..+++ +... ..... +..-.+......++-+++.+.. .++++++.|.+|+||+++++++..
T Consensus 565 iscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--------k~v~t~cQDrnirif~i~sgKq~k--- 632 (1080)
T KOG1408|consen 565 ISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--------KLVVTVCQDRNIRIFDIESGKQVK--- 632 (1080)
T ss_pred EeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCc--------ceEEEEecccceEEEeccccceee---
Confidence 66666665543 3322 11111 1111111224567778887664 899999999999999999877543
Q ss_pred eeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecC
Q 003208 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (839)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 591 (839)
.++....+++.+.. +...|.|-||++...|.++.++|..+++ +++.+. +|...||.+.|++|
T Consensus 633 -~FKgs~~~eG~lIK--v~lDPSgiY~atScsdktl~~~Df~sgE--------------cvA~m~-GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 633 -SFKGSRDHEGDLIK--VILDPSGIYLATSCSDKTLCFVDFVSGE--------------CVAQMT-GHSEAVTGVKFLND 694 (1080)
T ss_pred -eecccccCCCceEE--EEECCCccEEEEeecCCceEEEEeccch--------------hhhhhc-Ccchheeeeeeccc
Confidence 33344455566555 4478999999999999999999999876 444432 89999999999999
Q ss_pred CCEEEEecCCccEEEEeccc
Q 003208 592 DEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 592 ~~~la~gs~dg~i~iw~~~~ 611 (839)
-+.|++.+.||.|.||.++.
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999985
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-34 Score=258.59 Aligned_cols=296 Identities=17% Similarity=0.237 Sum_probs=228.2
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC-----CceEEEEecCCceeEEEEeeccCCccceEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l 196 (839)
+.+..++++|+++|+.++..+ .+.+.+++++.|.++.+|++.. |..++.+.+|..- +..+.. ++++.+.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~--~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~-v~dv~~---s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKI--KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF-VSDVVL---SSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeec--CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE-ecceEE---ccCCceE
Confidence 566778999999999999988 2467899999999999999853 5567777775432 223333 5899999
Q ss_pred EEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 003208 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 197 ~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 276 (839)
++++.|+.+++||+. .++..+.|.||...|.+++|+||.+++++||.
T Consensus 79 lS~swD~~lrlWDl~---------------------------------~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLA---------------------------------TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred EeccccceEEEEEec---------------------------------CCcEEEEEEecCCceEEEEecCCCceeecCCC
Confidence 999999999999999 77888999999999999999999999999999
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeec--cccceEEeEECC----CEEEEEeCCCeEEEEcC-CCceEEEeecccCC
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~----~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~ 349 (839)
|++|++|+.-.... +++.. +...|.|+.|+| ..|++++.|++|++||+ +-+....+.+|.+
T Consensus 126 DkTiklwnt~g~ck-----------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~- 193 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCK-----------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG- 193 (315)
T ss_pred cceeeeeeecccEE-----------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-
Confidence 99999999977544 23333 378999999995 48999999999999999 6677788899998
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 428 (839)
.++.++++|||.++++|+.||.+.+||++. +.+..++ +...|.+++|+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-------------------------------a~~~v~sl~fs 242 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-------------------------------AFDIVNSLCFS 242 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-------------------------------CCCeEeeEEec
Confidence 699999999999999999999999999954 3222221 22357888888
Q ss_pred cCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC
Q 003208 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (839)
Q Consensus 429 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~ 508 (839)
|+...++..... .|+||++++.....
T Consensus 243 pnrywL~~at~~------------------------------------------------------sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 243 PNRYWLCAATAT------------------------------------------------------SIKIWDLESKAVVE 268 (315)
T ss_pred CCceeEeeccCC------------------------------------------------------ceEEEeccchhhhh
Confidence 765444333222 25555555444333
Q ss_pred cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeec
Q 003208 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (839)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~ 553 (839)
...+...........+....+++++||..|++|..|+.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 333222222222233445557899999999999999999999875
No 20
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-32 Score=283.26 Aligned_cols=571 Identities=15% Similarity=0.192 Sum_probs=356.5
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
...|-.++|+ |. +++++++- .|.|++||.+-+.++.+|..|++ +|.+|+|+ |.+ .+++.+|
T Consensus 9 SsRvKglsFH--P~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH-------~~q----plFVSGG 70 (1202)
T KOG0292|consen 9 SSRVKGLSFH--PK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFH-------PTQ----PLFVSGG 70 (1202)
T ss_pred cccccceecC--CC----CCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeec-------CCC----CeEEecC
Confidence 4568899999 99 99999999 89999999999999999998776 89999999 665 5555554
Q ss_pred -CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 96 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
|-.|+||+.+. -+++.++.||-+.|..+.|++ .-.+++++|.|.+|+|||.++++++..+.
T Consensus 71 DDykIkVWnYk~---------------rrclftL~GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 71 DDYKIKVWNYKT---------------RRCLFTLLGHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred CccEEEEEeccc---------------ceehhhhccccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 79999999986 568899999999999999999 99999999999999999999999999998
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
+|.- .+.++.|+ |...+|++++-|.+|++||+..-+......+....-+.+.+ ....+.... .....+.+.|
T Consensus 133 GHnH-YVMcAqFh---ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~---~~~dLfg~~-DaVVK~VLEG 204 (1202)
T KOG0292|consen 133 GHNH-YVMCAQFH---PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ---GNSDLFGQT-DAVVKHVLEG 204 (1202)
T ss_pred cCce-EEEeeccC---CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc---cchhhcCCc-Ceeeeeeecc
Confidence 8764 35666774 77889999999999999998732221111110000000000 011111110 2334567889
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~v 332 (839)
|...|+-++|+|.-..|+||++|+.|++|.+...+. -++ -+..+|...|.++-|+| ++++|.|+|++|+|
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------WEv--DtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------WEV--DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccc------eee--hhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 999999999999999999999999999999976543 112 27889999999999996 89999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCC-c
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNF-S 409 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 409 (839)
||+ ..+.+.+++..+. ..|.++.+|..+++++ +.|+-+.+|.++. .+...+.+.. +-+-.+..+........ .
T Consensus 277 wDm~kRt~v~tfrrend-RFW~laahP~lNLfAA-gHDsGm~VFkleRErpa~~v~~n~--LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 277 WDMTKRTSVQTFRREND-RFWILAAHPELNLFAA-GHDSGMIVFKLERERPAYAVNGNG--LFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred EecccccceeeeeccCC-eEEEEEecCCcceeee-ecCCceEEEEEcccCceEEEcCCE--EEEEccceEEeeecccccc
Confidence 999 6678888887777 4999999999886655 5566777888853 2221111111 00001111111111110 0
Q ss_pred cc---eeeccCCCcceEEEEEecCC-eEEEEe-ccceEE-EEEecCCCCceeE--EEeeecCCCceEEeeecCCCCCCCC
Q 003208 410 EQ---IRLTDSKSEYVRCLHLTSED-TLYIAT-NHGYLY-HTKLCDMDSVNWN--KILQVSEGMPIICMDLLSNEPKYPC 481 (839)
Q Consensus 410 ~~---~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~g~i~-~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~ 481 (839)
.. ++.......+++++.++|.. ..++++ .++..+ .+.+.......-. ...++.....++.
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fv------------ 420 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFV------------ 420 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEE------------
Confidence 00 11111123568899999954 444443 223222 2222221111000 0000100000000
Q ss_pred CCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccc
Q 003208 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (839)
Q Consensus 482 ~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 561 (839)
...++.+.--.+..+.+-++.+...+ +... ......+| +.-+|.+|+.. ...|.+||+.......
T Consensus 421 arNrfavl~k~~~~v~ik~l~N~vtk-kl~~--------~~~~~~IF--~ag~g~lll~~--~~~v~lfdvQq~~~~~-- 485 (1202)
T KOG0292|consen 421 ARNRFAVLDKSNEQVVIKNLKNKVTK-KLLL--------PESTDDIF--YAGTGNLLLRS--PDSVTLFDVQQKKKVG-- 485 (1202)
T ss_pred EecceEEEEecCcceEEecccchhhh-cccC--------ccccccee--eccCccEEEEc--CCeEEEEEeecceEEE--
Confidence 00112222212333444333322111 1000 00111211 33445555432 3468999998654211
Q ss_pred cCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCcee
Q 003208 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (839)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt 641 (839)
.+ --..+..+.||+|.+++|.=+ ..+|.|.+..- ..++ ..|..-.|-
T Consensus 486 ------------si---~~s~vkyvvws~dm~~vAll~-Kh~i~i~~kkL--------------~l~~---sihEtirik 532 (1202)
T KOG0292|consen 486 ------------SI---KVSKVKYVVWSNDMSRVALLS-KHTITIADKKL--------------ELLC---SIHETIRIK 532 (1202)
T ss_pred ------------EE---ecCceeEEEEcCccchhhhcc-cceEEEEecch--------------hhee---cchheeEee
Confidence 11 134577888999999888765 45788876542 1222 234334577
Q ss_pred EEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEec
Q 003208 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (839)
Q Consensus 642 ~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~ 721 (839)
+-+|. .++-+|.|+.+- |++ .+.++. .|.|.. .|..++++-.+++.++.-|.
T Consensus 533 sgawd---e~gVfiYtT~nH--ikY-al~~GD-------------~GIikT---------Ld~~iyitkv~gn~V~cl~r 584 (1202)
T KOG0292|consen 533 SGAWD---EDGVFIYTTLNH--IKY-ALENGD-------------SGIIKT---------LDKPIYITKVKGNKVFCLNR 584 (1202)
T ss_pred eceec---cCceEEEEehhh--hhh-hhccCC-------------cceEEe---------cccceEEEEeeCCEEEEEec
Confidence 77787 677777777664 332 222221 222221 22345667777778888888
Q ss_pred cCccEEEEEe
Q 003208 722 ITEAKVVQIP 731 (839)
Q Consensus 722 ~~~~~~~~~~ 731 (839)
...-+.+.++
T Consensus 585 d~~~~~~~ID 594 (1202)
T KOG0292|consen 585 DGEIECLTID 594 (1202)
T ss_pred CCCeEEEeec
Confidence 8777777775
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-35 Score=279.88 Aligned_cols=283 Identities=18% Similarity=0.273 Sum_probs=239.4
Q ss_pred eccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEE
Q 003208 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (839)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~ 206 (839)
.--+-+.+|..+.|++ +++.||||+.+|.++||+..++..+.++.+|... +-.+.|++.. ++..+|+++.||+++
T Consensus 170 SQ~gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-v~~~~fhP~~-~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-VGAAVFHPVD-SDLNLATASADGTVK 244 (459)
T ss_pred hhccCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccc-eeeEEEccCC-CccceeeeccCCcee
Confidence 3346678999999999 9999999999999999999999999999887643 4456665322 477999999999999
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~ 286 (839)
+|++. ...++..+.||...|..++|+|+|++|+|++.|.+-++||++
T Consensus 245 lw~~~---------------------------------~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 245 LWKLS---------------------------------QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE 291 (459)
T ss_pred eeccC---------------------------------CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccc
Confidence 99998 667888999999999999999999999999999999999999
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEE
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l 363 (839)
++... ....||...|.+++|. |.+++|||.|..-+|||+ +|+++..+.+|.. +|.+++|+|+|..|
T Consensus 292 tk~El----------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~l 360 (459)
T KOG0272|consen 292 TKSEL----------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHL 360 (459)
T ss_pred cchhh----------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEE
Confidence 97652 3678999999999998 789999999999999999 9999999999988 79999999999999
Q ss_pred EEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec-CCeEEEEe-ccc
Q 003208 364 VTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIAT-NHG 440 (839)
Q Consensus 364 ~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~g 440 (839)
+|||.|++++|||++. .++.+ +..|...|+.+.|+| .|.+++++ .++
T Consensus 361 ATgs~Dnt~kVWDLR~r~~ly~------------------------------ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLRMRSELYT------------------------------IPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred eecCCCCcEEEeeeccccccee------------------------------cccccchhhheEecccCCeEEEEcccCc
Confidence 9999999999999965 22222 334556799999998 56777665 355
Q ss_pred eEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
.+ ++|........+.+.+| ...|.+++..++. ..+++++.|.++++|.
T Consensus 411 t~---kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~--------~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TV---KIWSTRTWSPLKSLAGH-EGKVISLDISPDS--------QAIATSSFDRTIKLWR 458 (459)
T ss_pred ce---eeecCCCcccchhhcCC-ccceEEEEeccCC--------ceEEEeccCceeeecc
Confidence 55 56766665545566676 6789999997765 8999999999999994
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=277.53 Aligned_cols=539 Identities=14% Similarity=0.189 Sum_probs=362.8
Q ss_pred CcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecc
Q 003208 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (839)
Q Consensus 3 d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 75 (839)
+++..++|..... +...|+||+-. ..+++++.+..|.+|- .|+.+..+-..+...|+-+..-
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~I~alas~--------~~~vy~A~g~~i~~~~--rgk~i~~~~~~~~a~v~~l~~f- 123 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDKITALASD--------KDYVYVASGNKIYAYA--RGKHIRHTTLLHGAKVHLLLPF- 123 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCceEEEEec--------CceEEEecCcEEEEEE--ccceEEEEeccccceEEEEeee-
Confidence 4566777766543 55679999977 5688898988888887 3544444433333568877655
Q ss_pred cccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC
Q 003208 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
.+ .++++-.++.+.||+......+ . . .+ +..++.-.+.|+++. ||. .--+.++.|+.
T Consensus 124 ------Ge-----~lia~d~~~~l~vw~~s~~~~e--~-----~--l~-~~~~~~~~~~Ital~-HP~-TYLNKIvvGs~ 180 (910)
T KOG1539|consen 124 ------GE-----HLIAVDISNILFVWKTSSIQEE--L-----Y--LQ-STFLKVEGDFITALL-HPS-TYLNKIVVGSS 180 (910)
T ss_pred ------cc-----eEEEEEccCcEEEEEecccccc--c-----c--cc-ceeeeccCCceeeEe-cch-hheeeEEEeec
Confidence 22 7888888999999999863200 0 0 11 233333334488774 561 12356788999
Q ss_pred CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 156 d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
+|.+.+||+++++.+.+++... +.+.++. .+|--..+|.|..+|+|.+++++
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~-s~IT~ie---qsPaLDVVaiG~~~G~ViifNlK------------------------ 232 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFF-SRITAIE---QSPALDVVAIGLENGTVIIFNLK------------------------ 232 (910)
T ss_pred CCcEEEEEeccCcEEEEecccc-cceeEec---cCCcceEEEEeccCceEEEEEcc------------------------
Confidence 9999999999999999998766 3444543 35777899999999999999999
Q ss_pred eeEeecccccceeeEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe
Q 003208 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 314 (839)
..+.+..++.-.+.|++++|..||+ .+++++..|.+.+||++..+. .. .....|.+.|...
T Consensus 233 ---------~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-----~~----v~~nah~~sv~~~ 294 (910)
T KOG1539|consen 233 ---------FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-----IN----VTRNAHYGSVTGA 294 (910)
T ss_pred ---------cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-----ee----eeeccccCCcccc
Confidence 6777888875469999999999986 467777789999999998655 22 2455788888888
Q ss_pred EEC--CCEEEEEeCCCeEEEEcC---CC--ceEEEeecccCCceEEEEEc-cCCCEEEEEeCCCcEEEEecCCcCccCcC
Q 003208 315 CLT--DSFIITAGEDCTCRVWGS---DG--KQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (839)
Q Consensus 315 ~~~--~~~l~s~~~dg~i~vw~~---~~--~~~~~~~~h~~~~i~~~~~~-~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 386 (839)
.|. ...+++++.|+.+++|=. +| +.++.-.+|.. |..++.|. .+|..+.+++.|++++.+++.......-.
T Consensus 295 ~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l 373 (910)
T KOG1539|consen 295 TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQEL 373 (910)
T ss_pred eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence 887 478999999999998865 33 55666677887 78999987 77899999999999999988331111000
Q ss_pred CC--CcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec------CCeEEEEeccceEEEEEecCCCCceeEEE
Q 003208 387 SH--PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS------EDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (839)
Q Consensus 387 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 458 (839)
++ ...... ....+ ......-.+|..+++.. ++.+.+-.++-..+.|+..+....+|...
T Consensus 374 ~~~~~~~~~k--k~~~~-----------~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~ 440 (910)
T KOG1539|consen 374 GQLHNKKRAK--KVNVF-----------STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD 440 (910)
T ss_pred cccccccccc--ccccc-----------chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence 00 000000 00000 00001112455555543 22333444555667777766655554321
Q ss_pred ee--ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCe
Q 003208 459 LQ--VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536 (839)
Q Consensus 459 ~~--~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 536 (839)
.. ...+..+.++++.. ++++.++|...|.|.+|+++++.....+- ....+...+.+ .+...-++
T Consensus 441 ~~~~~~~~~~~~av~vs~--------CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~g--la~D~~n~ 506 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSF--------CGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTG--LAVDGTNR 506 (910)
T ss_pred CccccccCcceEEEEEec--------cCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeE--EEecCCCc
Confidence 11 01234555665544 45999999999999999998876443321 11233444444 34455678
Q ss_pred EEEEeCCCCcEEEeeecCCCCccccc-------------------CCccceeeeeecc-------ccccCceEEEEeeec
Q 003208 537 FIFTADPKGRLKLWQLCDPFSSVCYE-------------------SSKTNNVFLVAEF-------SSCFGARIMCLDASF 590 (839)
Q Consensus 537 ~l~s~~~dg~i~~wd~~~~~~~~~~~-------------------~~~~~~~~~~~~~-------~~~h~~~I~~l~~s~ 590 (839)
.+++++.+|.+++||..+........ ..+...+.+.... -.+|+.+|++++|||
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 89999999999999998765221110 0111111111111 137999999999999
Q ss_pred CCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCc-CcEEEEE
Q 003208 591 EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD-GCICYLE 668 (839)
Q Consensus 591 ~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~D-g~i~iw~ 668 (839)
||+||++++.|++|++||+...+ .+. +.+-....+++.|+ |++.+|+|+..| .-|++|.
T Consensus 587 DgrWlisasmD~tIr~wDlpt~~-------------lID---~~~vd~~~~sls~S---PngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWDLPTGT-------------LID---GLLVDSPCTSLSFS---PNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCcEEEEeecCCcEEEEeccCcc-------------eee---eEecCCcceeeEEC---CCCCEEEEEEecCceEEEEE
Confidence 99999999999999999999642 121 22223679999999 899999999999 5588995
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-33 Score=274.05 Aligned_cols=316 Identities=16% Similarity=0.263 Sum_probs=255.8
Q ss_pred eeeeeeEEEEecCCCCCCCcc-eEEEee-CCeeEEEECCC----CeeeeEEe---------eecCceEEeEEeccccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEA----GTLIRPFQ---------VFHGIRLHGISCNFINCTE 80 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~-~l~~g~-~~~v~iwd~~~----~~~~~~~~---------~~~~~~v~~i~~~~~~~~~ 80 (839)
|..+|++.+++ |. .. ++++|+ +...++|++.. +.....++ .+....|++++|+
T Consensus 177 ~~~~V~~~~Wn--P~----~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn------ 244 (524)
T KOG0273|consen 177 HESEVFICAWN--PL----RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN------ 244 (524)
T ss_pred CCCceEEEecC--ch----hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec------
Confidence 78899999999 87 44 777777 78899999864 11111111 2233569999999
Q ss_pred CCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcE
Q 003208 81 GSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (839)
Q Consensus 81 ~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i 159 (839)
.+| .+|+++ -+|.++||+.. +.++.+|..|.++|.++.|+. .|++|++++.|+++
T Consensus 245 -~~G----~~LatG~~~G~~riw~~~----------------G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 245 -NDG----TLLATGSEDGEARIWNKD----------------GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTT 300 (524)
T ss_pred -CCC----CeEEEeecCcEEEEEecC----------------chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccE
Confidence 888 555554 58999999987 667888999999999999999 99999999999999
Q ss_pred EEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEe
Q 003208 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (839)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (839)
.+||..+++....+.-+... ...+.+ .+...+++.+.|+.|+|+.+.
T Consensus 301 ilwd~~~g~~~q~f~~~s~~-~lDVdW----~~~~~F~ts~td~~i~V~kv~---------------------------- 347 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAP-ALDVDW----QSNDEFATSSTDGCIHVCKVG---------------------------- 347 (524)
T ss_pred EEEeccCceEEEeeeeccCC-ccceEE----ecCceEeecCCCceEEEEEec----------------------------
Confidence 99999998887776655433 223333 355689999999999999998
Q ss_pred ecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-
Q 003208 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (839)
Q Consensus 240 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~- 318 (839)
...|+.++.||.++|.+|.|+|.+..|++||+|++++||++..... . ..+..|...|..+.|+|
T Consensus 348 -----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-----~-----~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 348 -----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-----V-----HDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred -----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-----h-----hhhhhhccceeeEeecCC
Confidence 6788889999999999999999999999999999999999877654 2 37889999999999982
Q ss_pred ----------CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcC
Q 003208 319 ----------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (839)
Q Consensus 319 ----------~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~ 386 (839)
..+++++.|++|++||+ .+.++..+..|.. +|.+++|+|+|+++++|+.||.|.+|+.+. +..+.+.
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 47999999999999999 9999999999998 899999999999999999999999999954 2222222
Q ss_pred CCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEE-EEeccceEEEEEe
Q 003208 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKL 447 (839)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~g~i~~~~~ 447 (839)
+ +..|-.++|+.+|..+ +...+|.+...++
T Consensus 492 ~-------------------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 G-------------------------------TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred C-------------------------------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 1 2347888898877544 4455666655443
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-32 Score=252.55 Aligned_cols=213 Identities=15% Similarity=0.279 Sum_probs=185.3
Q ss_pred ceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
+.+..++|+||...|.++.|++ +.++|++++.||.+.|||.-+....+.+..+. ..+..++| +|.++.+|+|+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s-~WVMtCA~---sPSg~~VAcGG 116 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-SWVMTCAY---SPSGNFVACGG 116 (343)
T ss_pred eeeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCc-eeEEEEEE---CCCCCeEEecC
Confidence 3556689999999999999999 99999999999999999999888877776554 34555555 79999999999
Q ss_pred cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003208 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (839)
Q Consensus 201 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i 280 (839)
-|+...||++.+.+... ..+..+.+.+|++.+.+..|-+| .+|+++|.|.++
T Consensus 117 LdN~Csiy~ls~~d~~g---------------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TC 168 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEG---------------------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTC 168 (343)
T ss_pred cCceeEEEecccccccc---------------------------cceeeeeecCccceeEEEEEcCC-CceEecCCCceE
Confidence 99999999998322111 23456678999999999999875 579999999999
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~ 356 (839)
.+||+++++. . ..+.+|.+.|.++.++ ++.+++|+.|...++||+ ++.+++.|.+|.. -|.++.|
T Consensus 169 alWDie~g~~-----~-----~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~f 237 (343)
T KOG0286|consen 169 ALWDIETGQQ-----T-----QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRF 237 (343)
T ss_pred EEEEcccceE-----E-----EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEE
Confidence 9999999876 3 3788999999999998 489999999999999999 8999999999999 4999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC
Q 003208 357 DSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 357 ~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.|+|.-+++|+.|++.++||++.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecC
Confidence 99999999999999999999954
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-33 Score=252.60 Aligned_cols=283 Identities=16% Similarity=0.236 Sum_probs=236.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECC-----CCeeeeEEeeecCceEEeEEecccccccCCCccceee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE-----AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 89 (839)
|.+.|+.++.. +. +...+++++ |..+.+|++. .|..++.+.+|.. .|..+..+ +||+ .
T Consensus 14 h~d~Vt~la~~--~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s-------~dg~---~ 77 (315)
T KOG0279|consen 14 HTDWVTALAIK--IK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLS-------SDGN---F 77 (315)
T ss_pred CCceEEEEEee--cC---CCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEc-------cCCc---e
Confidence 88999999998 65 355667766 9999999875 3677889998554 69999999 8985 7
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
.+.++.|+.+++||+.. ++..+.+.||...|++++|+| +...+++|+.|++|++||+... +
T Consensus 78 alS~swD~~lrlWDl~~---------------g~~t~~f~GH~~dVlsva~s~---dn~qivSGSrDkTiklwnt~g~-c 138 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLAT---------------GESTRRFVGHTKDVLSVAFST---DNRQIVSGSRDKTIKLWNTLGV-C 138 (315)
T ss_pred EEeccccceEEEEEecC---------------CcEEEEEEecCCceEEEEecC---CCceeecCCCcceeeeeeeccc-E
Confidence 78888899999999986 567788999999999999999 9999999999999999999654 4
Q ss_pred EEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 170 ILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 170 ~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
..++.... +..+.++.|.+. .+..+|++++.|++|++||++ ..+.
T Consensus 139 k~t~~~~~~~~WVscvrfsP~-~~~p~Ivs~s~DktvKvWnl~---------------------------------~~~l 184 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPN-ESNPIIVSASWDKTVKVWNLR---------------------------------NCQL 184 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCC-CCCcEEEEccCCceEEEEccC---------------------------------Ccch
Confidence 44444443 777888887432 237899999999999999999 7777
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-CEEEEEeCC
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGED 327 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~~~d 327 (839)
...+.||.+.++.++++|||..+++|+.||.+.+||++.++. ....+|...|.+++|+| .+.+.+..+
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-----------lysl~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-----------LYSLEAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-----------eEeccCCCeEeeEEecCCceeEeeccC
Confidence 888899999999999999999999999999999999999876 36678899999999995 566677777
Q ss_pred CeEEEEcC-CCceEEEeeccc--------CCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 328 CTCRVWGS-DGKQLKMIKEHI--------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~--------~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
..|+|||+ .+.++..++... .....+++|+++|..|++|-.|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88999999 565555443211 1135678999999999999999999999863
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=250.60 Aligned_cols=281 Identities=21% Similarity=0.337 Sum_probs=233.1
Q ss_pred CCCcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe--eeeEEeeecCceEEeE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i 71 (839)
|-|.|||.|...+|. ..+.|.+|... || +++|+++....||+||+.++. ++.++..+.. .|.++
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pd----k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PD----KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-NVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEc--CC----cchhhhccCCeeEEEEccCCCCCceeEEeccCC-ceEEE
Confidence 348899999999987 33568999999 99 899999999999999999875 6888998766 49999
Q ss_pred EecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE
Q 003208 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (839)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la 151 (839)
.|. -+|+ -+.+.+.||+++|||+.... . +..-.|..+|+++..+| +...|+
T Consensus 90 gF~-------~dgr---WMyTgseDgt~kIWdlR~~~---------------~-qR~~~~~spVn~vvlhp---nQteLi 140 (311)
T KOG0315|consen 90 GFQ-------CDGR---WMYTGSEDGTVKIWDLRSLS---------------C-QRNYQHNSPVNTVVLHP---NQTELI 140 (311)
T ss_pred EEe-------ecCe---EEEecCCCceEEEEeccCcc---------------c-chhccCCCCcceEEecC---CcceEE
Confidence 999 7883 44444558999999998522 2 23335779999999999 999999
Q ss_pred EEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCC
Q 003208 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (839)
Q Consensus 152 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 231 (839)
+|..+|.|++||+.+..+...+-......+.++.. .++|..++++...|..++|++-......
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v---~~dgsml~a~nnkG~cyvW~l~~~~~~s-------------- 203 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV---MPDGSMLAAANNKGNCYVWRLLNHQTAS-------------- 203 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEE---cCCCcEEEEecCCccEEEEEccCCCccc--------------
Confidence 99999999999999887777665544444556655 5899999999999999999987422221
Q ss_pred CCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccce
Q 003208 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (839)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 311 (839)
...++..++.|++.|..+.+||++++|+++|.|.+++||+.++.-. .+ ..+.+|...+
T Consensus 204 -------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-----le----~~l~gh~rWv 261 (311)
T KOG0315|consen 204 -------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-----LE----LVLTGHQRWV 261 (311)
T ss_pred -------------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee-----eE----EEeecCCceE
Confidence 4567788999999999999999999999999999999999988611 11 3788999999
Q ss_pred EEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEc
Q 003208 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (839)
Q Consensus 312 ~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~ 357 (839)
|.++|+ +.+|+||+.|+.+++|++ .++.+....+|.. +..|++..
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 999999 799999999999999999 8899999999987 56676653
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-32 Score=244.69 Aligned_cols=282 Identities=20% Similarity=0.336 Sum_probs=229.1
Q ss_pred ceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCC
Q 003208 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 36 ~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~ 114 (839)
-+|++++ |-+||+|.+.+|...++++..++ .|..+.+. ||+ ..|++++...||+||+....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~ds-qVNrLeiT-------pdk----~~LAaa~~qhvRlyD~~S~n------ 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDS-QVNRLEIT-------PDK----KDLAAAGNQHVRLYDLNSNN------ 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCcc-ceeeEEEc-------CCc----chhhhccCCeeEEEEccCCC------
Confidence 3555544 99999999999999999996665 59999999 887 88999999999999998755
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccce
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 194 (839)
..++.++.+|+..|+++.|.. +|..++||++||+++|||++...+.+.++.. +.+.++.. .|+..
T Consensus 73 -------p~Pv~t~e~h~kNVtaVgF~~---dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvl---hpnQt 137 (311)
T KOG0315|consen 73 -------PNPVATFEGHTKNVTAVGFQC---DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVL---HPNQT 137 (311)
T ss_pred -------CCceeEEeccCCceEEEEEee---cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEe---cCCcc
Confidence 457899999999999999999 9999999999999999999987666555433 23444444 37778
Q ss_pred EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEcCCCCEEEE
Q 003208 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVS 273 (839)
Q Consensus 195 ~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s 273 (839)
-|++|+.+|.|++||+. ...+.+.+ ..-.-.|.++...|||.+++.
T Consensus 138 eLis~dqsg~irvWDl~---------------------------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLG---------------------------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred eEEeecCCCcEEEEEcc---------------------------------CCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 89999999999999998 22222222 233467999999999999999
Q ss_pred EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCC--ceEEEeecccCC
Q 003208 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGR 349 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~--~~~~~~~~h~~~ 349 (839)
+...|.+++|++-..... ..++++ ..+..|++.+..+.++ .++|++++.|.+++||+.++ +....+.+|..
T Consensus 185 ~nnkG~cyvW~l~~~~~~--s~l~P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r- 259 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTA--SELEPV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR- 259 (311)
T ss_pred ecCCccEEEEEccCCCcc--ccceEh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-
Confidence 999999999999875431 112222 4688899999999999 58999999999999999944 45567788887
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCC
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESH 388 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~ 388 (839)
-+|..+|+.||++|+||+.|+.+++|++.. +.++.+.+|
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 599999999999999999999999999954 434444443
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=257.73 Aligned_cols=301 Identities=17% Similarity=0.285 Sum_probs=247.8
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA 193 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 193 (839)
-.|+-+..+++.+.+.+|.+||.|+++.| .+.++++|+.|++++|||+.+++...++.++... +-.+.+ ++.-
T Consensus 133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-vr~vav---S~rH 205 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-VRGVAV---SKRH 205 (460)
T ss_pred CCccccCcceehhhhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhhe-eeeeee---cccC
Confidence 34555566888999999999999999999 8999999999999999999999999988876532 334444 5777
Q ss_pred eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEE
Q 003208 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (839)
Q Consensus 194 ~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 273 (839)
.++++++.|+.|+.||+. ..+.++.+.||-..|.|++.+|.-..|++
T Consensus 206 pYlFs~gedk~VKCwDLe---------------------------------~nkvIR~YhGHlS~V~~L~lhPTldvl~t 252 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLE---------------------------------YNKVIRHYHGHLSGVYCLDLHPTLDVLVT 252 (460)
T ss_pred ceEEEecCCCeeEEEech---------------------------------hhhhHHHhccccceeEEEeccccceeEEe
Confidence 899999999999999999 78888899999999999999999999999
Q ss_pred EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCc
Q 003208 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~ 350 (839)
|+.|.++|+||+++... + ..+.||..+|..+.+. +..+++|+.|++|++||+ .|+...++..|.. .
T Consensus 253 ~grDst~RvWDiRtr~~-----V-----~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-s 321 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRAS-----V-----HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-S 321 (460)
T ss_pred cCCcceEEEeeecccce-----E-----EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-e
Confidence 99999999999999765 2 4889999999999998 789999999999999999 8999999988887 6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecC-CcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec
Q 003208 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 429 (839)
+.+++.+|....+++++.| .|+-|++. +..++.+. +|+..|.+++...
T Consensus 322 vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nls------------------------------gh~~iintl~~ns 370 (460)
T KOG0285|consen 322 VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS------------------------------GHNAIINTLSVNS 370 (460)
T ss_pred eeEEecCCchhhhhccCCc-cceeccCCccchhhccc------------------------------cccceeeeeeecc
Confidence 9999999999999999988 78999983 34444333 3446799999999
Q ss_pred CCeEEEEeccceEEEEEecCCCCceeEEEee--e--cCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 430 EDTLYIATNHGYLYHTKLCDMDSVNWNKILQ--V--SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 430 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
|+.+++++.+|.+.+|+-.+....+..+... + .....+++..+...+ ..|++|..|.+|++|.-+..
T Consensus 371 D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg--------~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 371 DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG--------SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred CceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC--------ceEEeccCCcceEEEecccc
Confidence 9999999999999988766554433111111 1 122345555454443 68999999999999976543
No 29
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.6e-30 Score=259.24 Aligned_cols=584 Identities=14% Similarity=0.152 Sum_probs=339.2
Q ss_pred CcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcc---eEEEee-CCeeEEEECCCCe--eeeEEeeecCceEE
Q 003208 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP---FLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLH 69 (839)
Q Consensus 3 d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~---~l~~g~-~~~v~iwd~~~~~--~~~~~~~~~~~~v~ 69 (839)
..+|.+||..+.. |.++|+|+.+. |. .. ++++|. |+.|++|.+.... .+.+++. + .+.
T Consensus 33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l--~~----s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~--~~~ 103 (764)
T KOG1063|consen 33 GPAIAVADPEKILIVTTLDGHVARVNCVHWL--PT----SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-H--CKE 103 (764)
T ss_pred CceEEEeCcccceeEEeccCCccceEEEEEc--cc----ccccceEEEccCCCcEEEEEEeehheEEEEeecC-c--cee
Confidence 4578888887753 89999999998 87 33 677766 9999999998433 3334444 2 344
Q ss_pred eEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce--EEEEEeeccCCC
Q 003208 70 GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV--FDVCFLKVCNGN 147 (839)
Q Consensus 70 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I--~~~~~~~~~~~~ 147 (839)
++++... +. ...+...++.+.+|+.+... .-+.+.++--.+.+ +|+++.| .++.
T Consensus 104 ~~cv~a~-----~~-----~~~~~~ad~~v~vw~~~~~e-------------~~~~~~~rf~~k~~ipLcL~~~~-~~~~ 159 (764)
T KOG1063|consen 104 CVCVVAR-----SS-----VMTCKAADGTVSVWDKQQDE-------------VFLLAVLRFEIKEAIPLCLAALK-NNKT 159 (764)
T ss_pred EEEEEee-----ee-----EEEeeccCceEEEeecCCCc-------------eeeehheehhhhhHhhHHHhhhc-cCCc
Confidence 5555411 11 22223579999999994322 12222222222222 4555555 1133
Q ss_pred cEEEEEeCCCcEEEEecCCC--ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 148 RSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 148 ~~las~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
-++|.|+.+..|.++.-... +.+..+.+|. ..+-++.|.....+..+||+++.|..|+||.+...........
T Consensus 160 ~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~-DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~---- 234 (764)
T KOG1063|consen 160 FLLACGGSKFVVDLYSSSADSFARVAELEGHT-DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER---- 234 (764)
T ss_pred EEEEecCcceEEEEeccCCcceeEEEEeeccc-hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc----
Confidence 35677777888888876644 3345555654 3355566554555678999999999999999983321110000
Q ss_pred cCCCCCCCceeeEe--ecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceE
Q 003208 226 HAHGSSSDFKCFKL--QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (839)
Q Consensus 226 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (839)
........+..... ......-..-..+.||++.|+++.|+|.+..|+++|.|.++.+|...+....- ...+..-.
T Consensus 235 e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiW---v~~vRlGe 311 (764)
T KOG1063|consen 235 EDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIW---VDVVRLGE 311 (764)
T ss_pred ccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceE---EEEEEeec
Confidence 00000000000000 00000000112345999999999999999999999999999999987753210 01111002
Q ss_pred eeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCC----ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 304 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~----~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.+.....+...|+ ++.+++-+..|..++|.... .....+.+|.. .|..++|+|.|.+|++.|.|.+-|+|-.
T Consensus 312 ~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 312 VGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred ccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc-cceeeeecCCCCEEEEeccccceeeecc
Confidence 22444567888888 46799999999999998421 34455678888 6999999999999999999999999876
Q ss_pred CCc-----CccCcCCCCc---ccccCC-CcceEEeecCCCccceeecc------------------C-----CCcceEEE
Q 003208 378 QAF-----LPGSLESHPE---AKEFNG-RTEIFSIKIPNFSEQIRLTD------------------S-----KSEYVRCL 425 (839)
Q Consensus 378 ~~~-----~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~------------------~-----~~~~v~~~ 425 (839)
-+. .+...+.|.. .+.+-. +.+..+ ...++.++.+. + ....|..+
T Consensus 391 wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS---gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 391 WGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS---GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred cccccceeeecccccccccceeeehccCCceeee---cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 321 1111111111 111111 000000 00011111100 0 00111222
Q ss_pred EEecCCeEEEEeccceE----EEEE-------ecCCC-------CceeEEE--eeecCCCceEEeeecCCCCCCCCCCCc
Q 003208 426 HLTSEDTLYIATNHGYL----YHTK-------LCDMD-------SVNWNKI--LQVSEGMPIICMDLLSNEPKYPCGIDD 485 (839)
Q Consensus 426 ~~~~~~~~~~~~~~g~i----~~~~-------~~~~~-------~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~ 485 (839)
..+....+.--++.|.. ..-. +..+. ...|..+ +.+| +.++++++.++++ +
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g--------n 538 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG--------N 538 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC--------C
Confidence 22211111001111111 0000 00000 0002111 1222 6778888886654 8
Q ss_pred EEEEeCCCc-----cEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCccc
Q 003208 486 WVALGDGKG-----NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (839)
Q Consensus 486 ~l~~g~~dg-----~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 560 (839)
++|+++... .|++|+..+...... +. .+.+.-..+.|+||+++|++++.|.++.+|....... ..
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~----L~-----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e 608 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQE----LE-----GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DE 608 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhhe----ec-----ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-hh
Confidence 999988653 688998876543321 11 1223344478999999999999999999999854321 11
Q ss_pred ccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCce
Q 003208 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTV 640 (839)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V 640 (839)
. .+ .....|+..|.+.+|+|++.++||+|+|.+|+||..++.. ...+...... .++ .+|
T Consensus 609 ~------~f----a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~--------d~~i~~~a~~--~~~-~aV 667 (764)
T KOG1063|consen 609 F------RF----ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR--------DKYISRFACL--KFS-LAV 667 (764)
T ss_pred h------hh----ccccccceEEEEcccCcccceeEEecCCceEEEEeccCch--------hhhhhhhchh--ccC-Cce
Confidence 1 11 1235799999999999999999999999999999988641 0111111111 333 789
Q ss_pred eEEEEEeccCC--ceEEEeecCcCcEEEEEEec
Q 003208 641 STLSVAKLRSN--QTEIRSTGGDGCICYLEYDK 671 (839)
Q Consensus 641 t~i~~~~~~~~--~~~l~s~~~Dg~i~iw~~~~ 671 (839)
|++++.+.... ...++.|-+-|.|.+|+...
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 99999875432 33567777899999999763
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-30 Score=259.53 Aligned_cols=428 Identities=14% Similarity=0.229 Sum_probs=298.4
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (839)
+..+|.++.++| .-. -.|++-..|.|.||+.++ ...+..+.-..-+|.+..|.+
T Consensus 12 rSdRVKsVd~HP-------teP---w~la~LynG~V~IWnyet---------------qtmVksfeV~~~PvRa~kfia- 65 (794)
T KOG0276|consen 12 RSDRVKSVDFHP-------TEP---WILAALYNGDVQIWNYET---------------QTMVKSFEVSEVPVRAAKFIA- 65 (794)
T ss_pred cCCceeeeecCC-------CCc---eEEEeeecCeeEEEeccc---------------ceeeeeeeecccchhhheeee-
Confidence 345899999994 431 556666799999999987 457778888888999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
..+++++|+.|..|+||+..+++.+..++.|.. .+-++..| |...++++++.|-.|++||++
T Consensus 66 --RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavH---Pt~P~vLtsSDDm~iKlW~we------------ 127 (794)
T KOG0276|consen 66 --RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVH---PTLPYVLTSSDDMTIKLWDWE------------ 127 (794)
T ss_pred --ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeec---CCCCeEEecCCccEEEEeecc------------
Confidence 999999999999999999999999999987753 34556654 667799999999999999998
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeece
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 302 (839)
..-.+.+.+.||+..|.+++|+| |.+.++|+|-|++|++|.+....+. +
T Consensus 128 --------------------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----------f 177 (794)
T KOG0276|consen 128 --------------------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----------F 177 (794)
T ss_pred --------------------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----------e
Confidence 15677889999999999999999 6689999999999999999886652 5
Q ss_pred EeeccccceEEeEEC-C---CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 303 VLYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 303 ~~~~h~~~v~~~~~~-~---~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
++.+|...|.|+.|- + .+++||+.|.+++|||. +..++.++.+|.. .|..+.|+|.-.++++|+.||++|+|+.
T Consensus 178 Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecC
Confidence 899999999999997 3 59999999999999999 7889999999998 7999999999999999999999999997
Q ss_pred CC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEecCCCCcee
Q 003208 378 QA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNW 455 (839)
Q Consensus 378 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~~~~~~ 455 (839)
.+ +...++.- .-+.+-|++-.+.+ .++++..+|.+. +++.
T Consensus 257 ~Ty~lE~tLn~------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lg------- 298 (794)
T KOG0276|consen 257 KTYKLEKTLNY------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVT-VKLG------- 298 (794)
T ss_pred cceehhhhhhc------------------------------CCceEEEEeecCCCCeEEEeccCCcEE-EEcc-------
Confidence 54 22222211 11346677666644 556666666553 2221
Q ss_pred EEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEE---------EEcCCCCCCcceeeeEeeccceeEEee
Q 003208 456 NKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV---------RVVGDVHTPQLSFTFTWSAGIERQLLG 526 (839)
Q Consensus 456 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (839)
.+.|..+|+.. ++++.+.. +.|.-- ++..++..+. ..+-....+ +..
T Consensus 299 -------reeP~vsMd~~----------gKIiwa~~--~ei~~~~~ks~~~~~ev~DgErL~L---svKeLgs~e--iyP 354 (794)
T KOG0276|consen 299 -------REEPAVSMDSN----------GKIIWAVH--SEIQAVNLKSVGAQKEVTDGERLPL---SVKELGSVE--IYP 354 (794)
T ss_pred -------CCCCceeecCC----------ccEEEEcC--ceeeeeeceeccCcccccCCccccc---hhhhccccc--cch
Confidence 12333333321 12222221 111111 2222222211 111110000 111
Q ss_pred EEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEE
Q 003208 527 TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (839)
Q Consensus 527 ~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~i 606 (839)
.....+|+|+++++++ ||...+|-.-.. ...+-+.-....|++|....|+-..++.|++
T Consensus 355 q~L~hsPNGrfV~Vcg-dGEyiIyTala~--------------------RnK~fG~~~eFvw~~dsne~avRes~~~vki 413 (794)
T KOG0276|consen 355 QTLAHSPNGRFVVVCG-DGEYIIYTALAL--------------------RNKAFGSGLEFVWAADSNEFAVRESNGNVKI 413 (794)
T ss_pred HHhccCCCCcEEEEec-CccEEEEEeeeh--------------------hhcccccceeEEEcCCCCeEEEEecCCceEE
Confidence 1245688999988775 577777764322 1122333457788999888888888999999
Q ss_pred EecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCc
Q 003208 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 607 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
+.--. ..+.+.+- .+ .-.+. +..|+..-.++.+++||.+.+.+
T Consensus 414 ~knfk---------e~ksi~~~----------~~-~e~i~-----gg~Llg~~ss~~~~fydW~~~~l 456 (794)
T KOG0276|consen 414 FKNFK---------EHKSIRPD----------MS-AEGIF-----GGPLLGVRSSDFLCFYDWESGEL 456 (794)
T ss_pred Eecce---------eccccccc----------cc-eeeec-----CCceEEEEeCCeEEEEEcccceE
Confidence 82111 11111111 01 12223 34566666677899999888643
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.1e-34 Score=265.84 Aligned_cols=258 Identities=18% Similarity=0.336 Sum_probs=220.5
Q ss_pred CCCcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+.|+||+|||..+.+ |+|.|.|+.|. .+++++|+ |.+|+|||+++|+++.++-.|.. .|..+.
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------~rviisGSSDsTvrvWDv~tge~l~tlihHce-aVLhlr 284 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-AVLHLR 284 (499)
T ss_pred cccCceEEeccccHHHHHhhhcCCCcEEeeecc--------ceEEEecCCCceEEEEeccCCchhhHHhhhcc-eeEEEE
Confidence 479999999988865 99999999998 67999998 99999999999999998886554 699999
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
|+ . | .+++++.|.++.+||+..+. ...+.+.+.||...|+.+.| +.+++++
T Consensus 285 f~-------n-g----~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHrAaVNvVdf-----d~kyIVs 335 (499)
T KOG0281|consen 285 FS-------N-G----YMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDF-----DDKYIVS 335 (499)
T ss_pred Ee-------C-C----EEEEecCCceeEEEeccCch------------HHHHHHHHhhhhhheeeecc-----ccceEEE
Confidence 98 3 3 88899999999999998644 25667889999999999999 4579999
Q ss_pred EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
++.|.+|++|++.+++.++++.+|.+.++. + .-.+.++++|+.|.+|++||+.
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAC-l-----QYr~rlvVSGSSDntIRlwdi~--------------------- 388 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIAC-L-----QYRDRLVVSGSSDNTIRLWDIE--------------------- 388 (499)
T ss_pred ecCCceEEEEeccceeeehhhhccccccee-h-----hccCeEEEecCCCceEEEEecc---------------------
Confidence 999999999999999999999999887553 3 3468899999999999999999
Q ss_pred CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
.+.++..+.||+.-|.++.| +.+.+++|+.||+|++||+......... ...+....+..|+++|.
T Consensus 389 ------------~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~-~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 389 ------------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP-ASTLCLRTLVEHSGRVF 453 (499)
T ss_pred ------------ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCccc-ccchHHHhhhhccceeE
Confidence 88999999999999999999 4678999999999999999876542100 01111125678999999
Q ss_pred EeEECCCEEEEEeCCCeEEEEcC-CCc
Q 003208 313 DCCLTDSFIITAGEDCTCRVWGS-DGK 338 (839)
Q Consensus 313 ~~~~~~~~l~s~~~dg~i~vw~~-~~~ 338 (839)
.++|....+++++.|.+|.|||. ++.
T Consensus 454 rLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 454 RLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEeecceEEEeccCCCeEEEEEcCCCC
Confidence 99999999999999999999999 543
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=257.65 Aligned_cols=280 Identities=22% Similarity=0.344 Sum_probs=247.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|..+|+.+-|+ |+ ..++++++ |.+|++||..+|+..+.+++|... |..|+|+ ..|+ .++.++
T Consensus 107 ~r~~vt~v~~h--p~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~-------a~Gk---~l~tcS 169 (406)
T KOG0295|consen 107 HRSSVTRVIFH--PS----EALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFD-------ASGK---YLATCS 169 (406)
T ss_pred cccceeeeeec--cC----ceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEe-------cCcc---EEEecC
Confidence 67889999999 98 67777775 899999999999999999998874 9999999 6664 566667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|=.+++||.+.. .+++..+.+|...|.+++|.| .++++++++.|++|+.|++.++.++.++.
T Consensus 170 sDl~~~LWd~~~~--------------~~c~ks~~gh~h~vS~V~f~P---~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 170 SDLSAKLWDFDTF--------------FRCIKSLIGHEHGVSSVFFLP---LGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred CccchhheeHHHH--------------HHHHHHhcCcccceeeEEEEe---cCCeeeecccccceeEEecccceeEEecc
Confidence 7878999999852 467788899999999999999 89999999999999999999999999998
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
++.. .+-.+.. ..||.++++++.|.+|++|-+. +..+...+++
T Consensus 233 ~h~e-wvr~v~v---~~DGti~As~s~dqtl~vW~~~---------------------------------t~~~k~~lR~ 275 (406)
T KOG0295|consen 233 GHSE-WVRMVRV---NQDGTIIASCSNDQTLRVWVVA---------------------------------TKQCKAELRE 275 (406)
T ss_pred CchH-hEEEEEe---cCCeeEEEecCCCceEEEEEec---------------------------------cchhhhhhhc
Confidence 7764 3333333 6899999999999999999998 7777788999
Q ss_pred CCCCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--
Q 003208 255 HEGSIFRIEWSSC---------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (839)
Q Consensus 255 h~~~V~~l~~~~~---------------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 317 (839)
|+.+|-+++|-|. +.++.+++.|++|++||+.++.++ +++.+|..+|..++|+
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL----------~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL----------FTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE----------EEEecccceeeeeEEcCC
Confidence 9999999999763 258999999999999999998763 5999999999999999
Q ss_pred CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
|++|+++..|+++++||+ .+++++.+..|.. -+++++|+.+..+++||+-|.++++|..
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccceeeeeec
Confidence 799999999999999999 8899999999988 5999999998899999999999999964
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.1e-31 Score=247.51 Aligned_cols=341 Identities=17% Similarity=0.213 Sum_probs=262.7
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
..+..+..|++.|.+++.+| +.+++|||+.|..-.+|++.++..+..+.+|..+ +.++.| +.++.+||+|+-+
T Consensus 55 dS~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS-Vt~~~F---shdgtlLATGdms 127 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS-VTCCSF---SHDGTLLATGDMS 127 (399)
T ss_pred cceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCc-eEEEEE---ccCceEEEecCCC
Confidence 35678899999999999999 9999999999999999999999988888877665 444554 6899999999999
Q ss_pred CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003208 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~i 282 (839)
|.|+||+.. ++.....+..--..|--+.|+|.+..|+.|+.||.+.+
T Consensus 128 G~v~v~~~s---------------------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 128 GKVLVFKVS---------------------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred ccEEEEEcc---------------------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence 999999998 55555566556677888999999999999999999999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccC
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~ 359 (839)
|.+.+... .+ .+.||..++++-.|. |+.++++..||+|++|++ +++++.++....+....++.++..
T Consensus 175 w~ip~~~~-----~k-----v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 175 WQIPSQAL-----CK-----VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA 244 (399)
T ss_pred EECCCcce-----ee-----EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccc
Confidence 99988543 22 788999999999998 699999999999999999 899998888665556889999999
Q ss_pred CCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEecc
Q 003208 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (839)
Q Consensus 360 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 439 (839)
+..++.|..++.+++-+... ++++... +
T Consensus 245 ~~~~~~g~~e~~~~~~~~~s---------------------------------------------------gKVv~~~-n 272 (399)
T KOG0296|consen 245 GSTLTKGNSEGVACGVNNGS---------------------------------------------------GKVVNCN-N 272 (399)
T ss_pred cceeEeccCCccEEEEcccc---------------------------------------------------ceEEEec-C
Confidence 99999999999888766421 1111111 1
Q ss_pred ceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeecc
Q 003208 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (839)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~ 519 (839)
+.. +.+.......+.|+...+.. ..-.++|+|+-||+|.|||+.....+.. + .
T Consensus 273 ~~~--------------~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~------c--~ 325 (399)
T KOG0296|consen 273 GTV--------------PELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHI------C--E 325 (399)
T ss_pred CCC--------------ccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhhee------c--c
Confidence 100 00001111122222222221 2226889999999999999977543321 1 1
Q ss_pred ceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEec
Q 003208 520 IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (839)
Q Consensus 520 ~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs 599 (839)
++..+... .+-+ ..+|++++.+|.|+.||..++.. ...| .+|...|.+++++|+.++++++|
T Consensus 326 he~~V~~l--~w~~-t~~l~t~c~~g~v~~wDaRtG~l--------------~~~y-~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 326 HEDGVTKL--KWLN-TDYLLTACANGKVRQWDARTGQL--------------KFTY-TGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred CCCceEEE--EEcC-cchheeeccCceEEeeeccccce--------------EEEE-ecCchheeEEEEcCCCcEEEEec
Confidence 22223332 2333 68999999999999999998863 2233 48999999999999999999999
Q ss_pred CCccEEEEecc
Q 003208 600 LRGNLVLFPLL 610 (839)
Q Consensus 600 ~dg~i~iw~~~ 610 (839)
.|++.+||+++
T Consensus 388 ~D~~a~VF~v~ 398 (399)
T KOG0296|consen 388 DDNTALVFEVP 398 (399)
T ss_pred CCCeEEEEecC
Confidence 99999999876
No 34
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-31 Score=257.43 Aligned_cols=334 Identities=18% Similarity=0.232 Sum_probs=260.3
Q ss_pred EeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCc----eEEEEe---------cCCceeEEEEeeccCCc
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSS----IILEVH---------SPERCLLYSMKLWGDNL 191 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~----~~~~~~---------~~~~~~~~s~~~~~~~~ 191 (839)
..++ |..+|.+++|+| ... .+++|+.|-..++|++.... ....++ .+...-+.++++ +.
T Consensus 173 kvl~-~~~~V~~~~WnP---~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W---n~ 245 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNP---LRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW---NN 245 (524)
T ss_pred eecc-CCCceEEEecCc---hhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe---cC
Confidence 3444 999999999999 555 89999999999999997411 111111 122233556666 67
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
+|..||+|+.||.+++|+.. +..+..+..|+++|++|.|+.+|.+|
T Consensus 246 ~G~~LatG~~~G~~riw~~~----------------------------------G~l~~tl~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKD----------------------------------GNLISTLGQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred CCCeEEEeecCcEEEEEecC----------------------------------chhhhhhhccCCceEEEEEcCCCCEE
Confidence 89999999999999999976 56677888999999999999999999
Q ss_pred EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccCC
Q 003208 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~ 349 (839)
++++.|+++.+||..++.. .+ .+.-|..+-..+.|. ...+++++.|+.|+|+.+ ..+++.++.+|++
T Consensus 292 lS~~vD~ttilwd~~~g~~-----~q-----~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g- 360 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTV-----KQ-----QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG- 360 (524)
T ss_pred EeccCCccEEEEeccCceE-----EE-----eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC-
Confidence 9999999999999988765 22 555677776778887 689999999999999999 7789999999999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 428 (839)
+|.++.|+|.+.+|++++.|++++||++.. .....+.. |+..|..+.++
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~------------------------------Hskei~t~~ws 410 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA------------------------------HSKEIYTIKWS 410 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh------------------------------hccceeeEeec
Confidence 699999999999999999999999999843 33333332 33456667777
Q ss_pred cCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC
Q 003208 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (839)
Q Consensus 429 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~ 508 (839)
|.|... ++ +..+..+++++.|+.|++||+..+.+..
T Consensus 411 p~g~v~-------------~n-------------------------------~~~~~~l~sas~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 411 PTGPVT-------------SN-------------------------------PNMNLMLASASFDSTVKLWDVESGVPIH 446 (524)
T ss_pred CCCCcc-------------CC-------------------------------CcCCceEEEeecCCeEEEEEccCCceeE
Confidence 654210 00 0123567888999999999998766432
Q ss_pred cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEee
Q 003208 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (839)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 588 (839)
. ...+...+.+ ++++|+|++|++|+.||.|++|+....+ +.+.+ .....|..+.|
T Consensus 447 ~-------f~kH~~pVys--vafS~~g~ylAsGs~dg~V~iws~~~~~--------------l~~s~--~~~~~Ifel~W 501 (524)
T KOG0273|consen 447 T-------LMKHQEPVYS--VAFSPNGRYLASGSLDGCVHIWSTKTGK--------------LVKSY--QGTGGIFELCW 501 (524)
T ss_pred e-------eccCCCceEE--EEecCCCcEEEecCCCCeeEeccccchh--------------eeEee--cCCCeEEEEEE
Confidence 2 2234444555 6799999999999999999999999876 23333 24667999999
Q ss_pred ecCCCEEEEecCCccEEEEecc
Q 003208 589 SFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 589 s~~~~~la~gs~dg~i~iw~~~ 610 (839)
+.+|.+|...-.||.+++-|+.
T Consensus 502 n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 502 NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999998864
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=251.88 Aligned_cols=280 Identities=19% Similarity=0.325 Sum_probs=241.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.+.|.||++. |. ..++++|+ |++++|||+.+|++..++.+|.. .|.++++|+.+ | ++++++
T Consensus 150 HlgWVr~vavd--P~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rH----p------YlFs~g 212 (460)
T KOG0285|consen 150 HLGWVRSVAVD--PG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRH----P------YLFSAG 212 (460)
T ss_pred ccceEEEEeeC--CC----ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccC----c------eEEEec
Confidence 89999999999 98 88999999 99999999999999999998776 59999999442 2 788888
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|+.|+-||+.. .+.++.+.||-..|.|++.+| .-+.|+||+.|.+++|||+++...+..+.
T Consensus 213 edk~VKCwDLe~---------------nkvIR~YhGHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 213 EDKQVKCWDLEY---------------NKVIRHYHGHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred CCCeeEEEechh---------------hhhHHHhccccceeEEEeccc---cceeEEecCCcceEEEeeecccceEEEec
Confidence 899999999986 568899999999999999999 99999999999999999999999999998
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
+|...+. ++.+ .+-...+++|+.|++|++||+. .++....+..
T Consensus 275 GH~~~V~-~V~~---~~~dpqvit~S~D~tvrlWDl~---------------------------------agkt~~tlt~ 317 (460)
T KOG0285|consen 275 GHTNPVA-SVMC---QPTDPQVITGSHDSTVRLWDLR---------------------------------AGKTMITLTH 317 (460)
T ss_pred CCCCcce-eEEe---ecCCCceEEecCCceEEEeeec---------------------------------cCceeEeeec
Confidence 8776533 3333 3556789999999999999999 7778888999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw 333 (839)
|+..|.+++.+|....+++++.| .|+-|++..+.. +. .+.+|..-|.+++.. +.++++|+.+|.+..|
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f-----~~-----nlsgh~~iintl~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF-----LQ-----NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccch-----hh-----ccccccceeeeeeeccCceEEEcCCceEEEEE
Confidence 99999999999999999999998 499999988765 22 688999999999987 8999999999999999
Q ss_pred cC-CCceEEEe---ec----ccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 334 GS-DGKQLKMI---KE----HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 334 ~~-~~~~~~~~---~~----h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
|. +|...+.. .. ....+|.+.+|+..|..|+||..|.+|++|.-+
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 98 55332222 11 112369999999999999999999999999763
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=235.30 Aligned_cols=295 Identities=19% Similarity=0.319 Sum_probs=233.5
Q ss_pred eeeeEeccCCCcceEEEEEeeccCC-CcEEEEEeCCCcEEEEecCCC---ceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~-~~~las~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
+..++.+.+|.+.|..++|+| . |..||||+.|+.|++|+...+ .+...+.......+-++++ +|.+.+||
T Consensus 4 l~~~~~~~gh~~r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 456788899999999999999 6 789999999999999999853 3333343334444566665 79999999
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 277 (839)
+|+.|.++.||.-. ....+++..+.||++.|.+++|+++|++||+|+.|
T Consensus 78 ~aSFD~t~~Iw~k~-------------------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 78 SASFDATVVIWKKE-------------------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred EeeccceEEEeecC-------------------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 99999999999855 11567899999999999999999999999999999
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcCC----CceEEEeecccCCce
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD----GKQLKMIKEHIGRGI 351 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~~----~~~~~~~~~h~~~~i 351 (839)
+.|.||.+..... .... ..+.+|...|..+.|+| .+|++++.|++|++|+-. -.++.++.+|.. .|
T Consensus 127 KSVWiWe~deddE-----fec~--aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TV 198 (312)
T KOG0645|consen 127 KSVWIWEIDEDDE-----FECI--AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TV 198 (312)
T ss_pred CeEEEEEecCCCc-----EEEE--eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eE
Confidence 9999999986544 4544 38899999999999997 899999999999999872 257899999998 69
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC
Q 003208 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 431 (839)
++++|++.|..|++++.|++++||....... ..|...+..+++. ++
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---------------------------------~~~sr~~Y~v~W~-~~ 244 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---------------------------------GMHSRALYDVPWD-NG 244 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccCcc---------------------------------hhcccceEeeeec-cc
Confidence 9999999999999999999999998632110 1122457777787 77
Q ss_pred eEEEEeccceEEEEEecCC-CCceeEEEee--ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEc
Q 003208 432 TLYIATNHGYLYHTKLCDM-DSVNWNKILQ--VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 432 ~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
.+..++.++.|..+.-... ....|..+.. ..+...+.++...|. ..++|++|+.||.|++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-------~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-------VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-------CCCceeecCCCceEEEEEec
Confidence 7888888888877655432 2233433321 223557777777663 24799999999999999873
No 37
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.1e-29 Score=253.79 Aligned_cols=602 Identities=13% Similarity=0.107 Sum_probs=361.1
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe--CCCcEEEEecCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISN 166 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~--~d~~i~vwd~~~ 166 (839)
.+++--.+..|.+|+.+. .+.-+.+..|+.++++++|++ +|+++|+|- ....++||++..
T Consensus 50 gl~aYpAGCvVVlfn~~~---------------~tQ~hlvnssRk~~t~vAfS~---~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDS---------------CTQSHLVNSSRKPLTCVAFSQ---NGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred cceeeccCcEEEEEcccc---------------cchhheecccCcceeEEEEcC---CCcEEEecccCCCccceeeeecc
Confidence 445555678999999875 334456677889999999999 999999985 456799999998
Q ss_pred CceEEEEecCCceeEEEEeeccCCccceEEEEeec--CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
...+..+..|... +.++.| +|.+.+|++.+. |-.|.+||++
T Consensus 112 h~vVAEfvdHKY~-vtcvaF---sp~~kyvvSVGsQHDMIVnv~dWr--------------------------------- 154 (1080)
T KOG1408|consen 112 HGVVAEFVDHKYN-VTCVAF---SPGNKYVVSVGSQHDMIVNVNDWR--------------------------------- 154 (1080)
T ss_pred ccchhhhhhcccc-ceeeee---cCCCcEEEeeccccceEEEhhhhh---------------------------------
Confidence 8777777666533 333444 688999997655 4467789887
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-------
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------- 317 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------- 317 (839)
...... -..-...|..++|+.+|.++++.+. ++|++|.++..... .++ ..+.+...-.-.+.+.
T Consensus 155 ~N~~~a-snkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~Ky-kdp------iPl~gRs~~lg~lr~n~f~avaC 225 (1080)
T KOG1408|consen 155 VNSSGA-SNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKY-KDP------IPLPGRSYFLGNLRFNEFLAVAC 225 (1080)
T ss_pred hccccc-ccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccc-cCC------ccccchhhhccccccchhhhhhh
Confidence 111111 1123467889999999999998765 89999999876531 000 1122211111111111
Q ss_pred --C----CEEEEEeCCCeEEEEcCCCceEEEee-cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCC-C
Q 003208 318 --D----SFIITAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLES-H 388 (839)
Q Consensus 318 --~----~~l~s~~~dg~i~vw~~~~~~~~~~~-~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~-~ 388 (839)
+ ..++ -...|.+.-|.- .+.+.++- .... ...||+++ .++|++|+.+|.|++|+... ....++.- |
T Consensus 226 g~gicAestfa-it~qGhLvEFSs-RRLLDKWVqcRTT-nAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~h 300 (1080)
T KOG1408|consen 226 GVGICAESTFA-ITAQGHLVEFSS-RRLLDKWVQCRTT-NANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSH 300 (1080)
T ss_pred cCcccccceEE-Eecccceeeech-hhhhhhhhhhhcc-ccceeeee--cceEEEeeccceeeecCcchhhhcccccccc
Confidence 1 1111 112233332221 11111111 1111 34566665 47999999999999999854 33333321 1
Q ss_pred Cccccc---CCCcceEEeecCCCccceeeccCCCcceEEEEEecC-CeEEEEeccceEEEEEecCCCCceeEEEeeecCC
Q 003208 389 PEAKEF---NGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEG 464 (839)
Q Consensus 389 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 464 (839)
...... .....++... ....--..-++.|.+. ..+.+.-++-.+|.|++.+..........-. +.
T Consensus 301 alg~d~a~~~q~~~~~s~~----------~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS 369 (1080)
T KOG1408|consen 301 ALGSDTANLSQPEPKNSES----------SPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HS 369 (1080)
T ss_pred ccccchhhccccccccccc----------CcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-cc
Confidence 100000 0001111111 0111112456677764 4677777889999999988655431111111 23
Q ss_pred CceEEeeecCCCCC---CCCCCCcEEEEeCCCccEEEEEEcCCCCCCc---ceee-----eEee----------------
Q 003208 465 MPIICMDLLSNEPK---YPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ---LSFT-----FTWS---------------- 517 (839)
Q Consensus 465 ~~v~~~~~~~~~~~---~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~---~~~~-----~~~~---------------- 517 (839)
.-++.+...|.... ...-...-+++++.|++|++|++........ ..+. +...
T Consensus 370 ~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fd 449 (1080)
T KOG1408|consen 370 ACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFD 449 (1080)
T ss_pred ceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccc
Confidence 34444444442100 0111234589999999999999976221111 0000 0000
Q ss_pred ------ccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeec-
Q 003208 518 ------AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF- 590 (839)
Q Consensus 518 ------~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~- 590 (839)
....-.+.. .|++|++++|++|..-|.+++|++..... ..+..+|...|.|+.||.
T Consensus 450 ka~~s~~d~r~G~R~--~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 450 KALVSTCDSRFGFRA--LAVSPDGQHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred ccchhhcCcccceEE--EEECCCcceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCc
Confidence 000111222 57899999999999999999999986532 022347999999999993
Q ss_pred --CCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEE
Q 003208 591 --EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 591 --~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~ 668 (839)
..++||+|++|.-|.|||+.++ +.+..++. .|. +.||+|.|.-..- +..++|+|.|..|.+-.
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rn------------y~l~qtld-~HS-ssITsvKFa~~gl-n~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRN------------YDLVQTLD-GHS-SSITSVKFACNGL-NRKMISCGADKSIMFRV 577 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccc------------cchhhhhc-ccc-cceeEEEEeecCC-ceEEEeccCchhhheeh
Confidence 2679999999999999999863 33444443 454 7899999984222 27899999999887644
Q ss_pred EecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEEEeeCCCC--cceeeccCCc
Q 003208 669 YDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWR--RPHSYFLGDV 746 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~cgg~~--r~~~~~~~~~ 746 (839)
....+....+...+..-..+.+-.+.. ++...+++.+.++..+.++|....++.-...-.-.| .+-.+..
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l--- 649 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL--- 649 (1080)
T ss_pred hccccCceeccccccccccceEEEeee-----CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE---
Confidence 332222111221112212333433333 333557999999999999999998877665311111 1222221
Q ss_pred cCceeEEE-EEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEeccccccccccccccCCCceEEEeccCCCeE
Q 003208 747 PEIKNCFA-YVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTV 825 (839)
Q Consensus 747 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~i~tg~eD~ti 825 (839)
++.+..++ -..+..+.++++... ....++-||+.-||.+-|+++ =+.|++.|-|+-|
T Consensus 650 DPSgiY~atScsdktl~~~Df~sg-------EcvA~m~GHsE~VTG~kF~nD---------------CkHlISvsgDgCI 707 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSG-------ECVAQMTGHSEAVTGVKFLND---------------CKHLISVSGDGCI 707 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccc-------hhhhhhcCcchheeeeeeccc---------------chhheeecCCceE
Confidence 22233333 456667888888432 235667899999999999854 5788999999999
Q ss_pred EEEEeec
Q 003208 826 RLTRYAV 832 (839)
Q Consensus 826 ~iw~~~~ 832 (839)
.+|++..
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 9999864
No 38
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-29 Score=260.31 Aligned_cols=468 Identities=14% Similarity=0.169 Sum_probs=301.7
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~ 114 (839)
..++.++.|....+||.+.-.++..-. .....|+|++-. .+ ++-++.++.|.+|.-.
T Consensus 47 ~~~vtt~vgksfqvYd~~kl~ll~vs~-~lp~~I~alas~-------~~------~vy~A~g~~i~~~~rg--------- 103 (910)
T KOG1539|consen 47 TFYVTTCVGKSFQVYDVNKLNLLFVSK-PLPDKITALASD-------KD------YVYVASGNKIYAYARG--------- 103 (910)
T ss_pred eEEEEEecCceEEEEeccceEEEEecC-CCCCceEEEEec-------Cc------eEEEecCcEEEEEEcc---------
Confidence 456666669999999998766655443 234479999866 33 3444445778888653
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-ceEE---EEecCCceeEEEEeeccCC
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIIL---EVHSPERCLLYSMKLWGDN 190 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-~~~~---~~~~~~~~~~~s~~~~~~~ 190 (839)
....+.+.+|...|.-+.. =|..++++..++.+.||+.... +... .+.......+.++. | ++
T Consensus 104 -------k~i~~~~~~~~a~v~~l~~-----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H-P~ 169 (910)
T KOG1539|consen 104 -------KHIRHTTLLHGAKVHLLLP-----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H-PS 169 (910)
T ss_pred -------ceEEEEeccccceEEEEee-----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c-ch
Confidence 2455677788877776653 5678888899999999999874 2211 11111111122222 1 22
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
---+.|+.|+..|.+.+|+++ +++.++.++++...|+++.-+|--..
T Consensus 170 TYLNKIvvGs~~G~lql~Nvr---------------------------------t~K~v~~f~~~~s~IT~ieqsPaLDV 216 (910)
T KOG1539|consen 170 TYLNKIVVGSSQGRLQLWNVR---------------------------------TGKVVYTFQEFFSRITAIEQSPALDV 216 (910)
T ss_pred hheeeEEEeecCCcEEEEEec---------------------------------cCcEEEEecccccceeEeccCCcceE
Confidence 334678999999999999999 89999999999999999999998889
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc-ccceEEeEEC---CCEEEEEeCCCeEEEEcCCCc-eEEEee-
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT---DSFIITAGEDCTCRVWGSDGK-QLKMIK- 344 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~-~~~~~~- 344 (839)
++.|..+|+|.+++++..+. .....| .++|+++.|. ...+++|+..|.+.+||++++ .+..++
T Consensus 217 VaiG~~~G~ViifNlK~dki-----------l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 217 VAIGLENGTVIIFNLKFDKI-----------LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred EEEeccCceEEEEEcccCcE-----------EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 99999999999999999876 233445 5999999998 368888899999999999544 444444
Q ss_pred cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEE
Q 003208 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (839)
Q Consensus 345 ~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 424 (839)
.|.+ .|..+.|.|....+++.+.|+.+++|-.+.. ...+..++.-.+|..+..|
T Consensus 286 ah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~-------------------------dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 286 AHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSG-------------------------DGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred cccC-CcccceecCCCceEeeccCCCceeEEEeeCC-------------------------CCcchheeeccCCCCCchh
Confidence 5656 6999999999999999999999999966421 0012223444577788899
Q ss_pred EEEe-cCCeEEEEe-ccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEc
Q 003208 425 LHLT-SEDTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 425 ~~~~-~~~~~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
+.|. .++..+... .++.+..+.+......+ ++.+ +..-...+.+.+....
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~--~l~~--------------------------~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQ--ELGQ--------------------------LHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhH--hhcc--------------------------cccccccccccccchh
Confidence 9988 455555444 34433322221111000 0000 0000001122222111
Q ss_pred CCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCce
Q 003208 503 GDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGAR 582 (839)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 582 (839)
..+..+...+...+..+. .....+++--.+..++.|+..+... +.. .+. +.++. .....
T Consensus 392 ~~k~p~i~~fa~~~~RE~------------~W~Nv~~~h~~~~~~~tW~~~n~~~-G~~------~L~-~~~~~-~~~~~ 450 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREK------------EWDNVITAHKGKRSAYTWNFRNKTS-GRH------VLD-PKRFK-KDDIN 450 (910)
T ss_pred hhcCCcceeeecccchhh------------hhcceeEEecCcceEEEEeccCccc-ccE------Eec-Ccccc-ccCcc
Confidence 111111111111111100 1122333344566788898876431 111 111 11121 24577
Q ss_pred EEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcC
Q 003208 583 IMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDG 662 (839)
Q Consensus 583 I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg 662 (839)
+++++.++.|++.+.|+..|.|-+|+++.+.. +..+ .. ..+|. ..|+.|+.. .-++.++|+|.||
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-------r~sf--~~--~~ah~-~~V~gla~D---~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-------RKSF--GD--SPAHK-GEVTGLAVD---GTNRLLVSAGADG 515 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCee-------eccc--cc--Ccccc-CceeEEEec---CCCceEEEccCcc
Confidence 99999999999999999999999999996421 0011 00 11565 789999888 6678899999999
Q ss_pred cEEEEEEecCC
Q 003208 663 CICYLEYDKDR 673 (839)
Q Consensus 663 ~i~iw~~~~~~ 673 (839)
.+++|++....
T Consensus 516 ilkfw~f~~k~ 526 (910)
T KOG1539|consen 516 ILKFWDFKKKV 526 (910)
T ss_pred eEEEEecCCcc
Confidence 99999988753
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.4e-32 Score=279.78 Aligned_cols=268 Identities=17% Similarity=0.317 Sum_probs=225.1
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
..++|..|+ +| ..++|+|- |..|++|.+... .+..++.... +.- +| ..+.|
T Consensus 379 ~~v~ca~fS--dd----ssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~--l~~-----------~d--------~~sad 430 (707)
T KOG0263|consen 379 QGVTCAEFS--DD----SSMLACGFVDSSVRVWSLTPK-KLKKLKDASD--LSN-----------ID--------TESAD 430 (707)
T ss_pred CcceeEeec--CC----cchhhccccccEEEEEecchh-hhccccchhh--hcc-----------cc--------ccccc
Confidence 358999999 88 78999988 899999998643 3344442111 111 11 11122
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
-.+.+.|... .....++.||.++|..+.|+| +.++|++++.|+++|+|.+.+..++...++|
T Consensus 431 ~~~~~~D~~~---------------~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH 492 (707)
T KOG0263|consen 431 VDVDMLDDDS---------------SGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH 492 (707)
T ss_pred hhhhhccccC---------------CceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCC
Confidence 2234444332 234456889999999999999 9999999999999999999999999888866
Q ss_pred CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC
Q 003208 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (839)
Q Consensus 177 ~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (839)
.. .+|.+.| +|.|-++|+++.|++-++|... ...+.+.+.||-
T Consensus 493 ~~-PVwdV~F---~P~GyYFatas~D~tArLWs~d---------------------------------~~~PlRifaghl 535 (707)
T KOG0263|consen 493 LA-PVWDVQF---APRGYYFATASHDQTARLWSTD---------------------------------HNKPLRIFAGHL 535 (707)
T ss_pred Cc-ceeeEEe---cCCceEEEecCCCceeeeeecc---------------------------------cCCchhhhcccc
Confidence 54 4677776 6899999999999999999998 678888899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEc
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 334 (839)
+.|.|+.|+|+..++++||.|++||+||+.++.. ++ .+.||.++|.+++|+ |.+|++|++||.|.+||
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----VR-----iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----VR-----IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcE-----EE-----EecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999999999999999876 43 788999999999999 79999999999999999
Q ss_pred C-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 335 ~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+ .++.+..+.+|.+ .|.++.|+.+|..||+||.|.+|++||+..
T Consensus 606 l~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9 8899999999987 799999999999999999999999999854
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-32 Score=260.11 Aligned_cols=278 Identities=19% Similarity=0.285 Sum_probs=229.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
-..+|..|.+. |+ |+-|++|+ .|...+|+..+-.- .++...|+.+|.++.|+ +++. .++...
T Consensus 95 vkc~V~~v~Wt--Pe----GRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws-------~~g~---wmiSgD 157 (464)
T KOG0284|consen 95 VKCPVNVVRWT--PE----GRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWS-------HNGT---WMISGD 157 (464)
T ss_pred cccceeeEEEc--CC----CceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEc-------cCCC---EEEEcC
Confidence 34579999999 99 67777766 79999999743222 22333455589999999 8873 555555
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC-cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
.+|.|++|+... ..++.+.+|. ..|++++|+| +...+++++.||+|+|||....+....+
T Consensus 158 ~gG~iKyWqpnm----------------nnVk~~~ahh~eaIRdlafSp---nDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 158 KGGMIKYWQPNM----------------NNVKIIQAHHAEAIRDLAFSP---NDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred CCceEEecccch----------------hhhHHhhHhhhhhhheeccCC---CCceeEEecCCCeEEEEeccCCchhhee
Confidence 689999999873 3444555555 8999999999 8889999999999999999988887777
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
.+|.- .+-++++| |...+||+|+.|..|++||.+ ++.++..+.
T Consensus 219 ~GHgw-dVksvdWH---P~kgLiasgskDnlVKlWDpr---------------------------------Sg~cl~tlh 261 (464)
T KOG0284|consen 219 RGHGW-DVKSVDWH---PTKGLIASGSKDNLVKLWDPR---------------------------------SGSCLATLH 261 (464)
T ss_pred ccCCC-CcceeccC---CccceeEEccCCceeEeecCC---------------------------------Ccchhhhhh
Confidence 66653 24566664 677899999999999999999 899999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTC 330 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i 330 (839)
+|+..|..+.|+|++++|+++|.|..++++|++..+. + +.+.+|...|+++.|+ +++|.+|+.||.|
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------l--~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------L--FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------H--HHhhcchhhheeeccccccccceeeccCCCce
Confidence 9999999999999999999999999999999995433 2 4888999999999998 5899999999999
Q ss_pred EEEcCC-CceEEEee-cccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 331 RVWGSD-GKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 331 ~vw~~~-~~~~~~~~-~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
..|.+. .+++..+. .|.+ .||+++|+|-|.+|++|+.|.++++|.-
T Consensus 332 vh~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEEeccccccccCCCccccc-ceeeeeccccceeEeecCCCcceeeecc
Confidence 999994 55555554 4666 7999999999999999999999999976
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.9e-29 Score=259.47 Aligned_cols=364 Identities=15% Similarity=0.222 Sum_probs=270.6
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (839)
+..+|.+++|+ |... ..++.--.|.|++||..- +.++..+..|.++|..++|+|
T Consensus 8 kSsRvKglsFH-------P~rP---wILtslHsG~IQlWDYRM---------------~tli~rFdeHdGpVRgv~FH~- 61 (1202)
T KOG0292|consen 8 KSSRVKGLSFH-------PKRP---WILTSLHSGVIQLWDYRM---------------GTLIDRFDEHDGPVRGVDFHP- 61 (1202)
T ss_pred ccccccceecC-------CCCC---EEEEeecCceeeeehhhh---------------hhHHhhhhccCCccceeeecC-
Confidence 45589999999 5431 344444689999999975 678899999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
.+.++++|+.|-.|+||+..+.+++.++.+|.. .+-++.|| ..-.+|++++.|.+|+||+++
T Consensus 62 --~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-YVRt~~FH---heyPWIlSASDDQTIrIWNwq------------ 123 (1202)
T KOG0292|consen 62 --TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-YVRTVFFH---HEYPWILSASDDQTIRIWNWQ------------ 123 (1202)
T ss_pred --CCCeEEecCCccEEEEEecccceehhhhccccc-eeEEeecc---CCCceEEEccCCCeEEEEecc------------
Confidence 999999999999999999999999999988764 35556664 556799999999999999999
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCC---C-------
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD---S------- 293 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---~------- 293 (839)
+++++..+.||...|.|..|+|....++|+|-|.+||+||+..-.... .
T Consensus 124 ---------------------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 124 ---------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred ---------------------CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 899999999999999999999999999999999999999987533210 0
Q ss_pred ----------CCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcCCC---ceEEEeecccCCceEEEEEcc
Q 003208 294 ----------DSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDG---KQLKMIKEHIGRGIWRCLYDS 358 (839)
Q Consensus 294 ----------~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~~~---~~~~~~~~h~~~~i~~~~~~~ 358 (839)
..-..++ ..+.||...|.-++|+| .+++||+.|..|++|..+. -.+.+.++|.+ +|.++-|+|
T Consensus 183 ~~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp 260 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHP 260 (1202)
T ss_pred ccccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecC
Confidence 0001122 57889999999999997 8999999999999999933 24567789999 799999999
Q ss_pred CCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe
Q 003208 359 LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (839)
Q Consensus 359 ~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 437 (839)
...++++.|.|++|++||++. ..+++++ ..++..-.++..|...+++++
T Consensus 261 ~q~lIlSnsEDksirVwDm~kRt~v~tfr------------------------------rendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 261 HQDLILSNSEDKSIRVWDMTKRTSVQTFR------------------------------RENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred ccceeEecCCCccEEEEecccccceeeee------------------------------ccCCeEEEEEecCCcceeeee
Confidence 999999999999999999954 3344332 122457788888988999998
Q ss_pred ccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEee
Q 003208 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~ 517 (839)
.++.+..+++. ...+.+++. ++.++.+- |..|+.+|+.+.+..+..++.. .
T Consensus 311 HDsGm~VFkle--------------RErpa~~v~-----------~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~--~ 361 (1202)
T KOG0292|consen 311 HDSGMIVFKLE--------------RERPAYAVN-----------GNGLFYVK--DRFIRSYDLRTQKDTAVASLRR--P 361 (1202)
T ss_pred cCCceEEEEEc--------------ccCceEEEc-----------CCEEEEEc--cceEEeeeccccccceeEeccC--C
Confidence 88777655442 233444531 12344443 7899999998744333222211 1
Q ss_pred ccceeEEeeEEEeecC-CCeEEEEeCCC-CcEEEeeecCC
Q 003208 518 AGIERQLLGTYWCKSL-GHRFIFTADPK-GRLKLWQLCDP 555 (839)
Q Consensus 518 ~~~~~~~~~~~~~~s~-~~~~l~s~~~d-g~i~~wd~~~~ 555 (839)
...-....+ +.+.| .+..|++...| |...++.+.+.
T Consensus 362 g~~~~~~~s--msYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 362 GTLWQPPRS--LSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred CcccCCcce--eeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 000111112 23455 35556654444 45556666543
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=6e-30 Score=241.65 Aligned_cols=294 Identities=15% Similarity=0.157 Sum_probs=244.0
Q ss_pred CCCcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
++|.-..+|+..++. |...|+|+.|+ .| +.||++|. +|.|+||...+|....++...- ..+.=+.
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hd----gtlLATGdmsG~v~v~~~stg~~~~~~~~e~-~dieWl~ 155 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HD----GTLLATGDMSGKVLVFKVSTGGEQWKLDQEV-EDIEWLK 155 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEc--cC----ceEEEecCCCccEEEEEcccCceEEEeeccc-CceEEEE
Confidence 357778899999987 88899999999 77 89999999 9999999999999888886322 2355667
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
|+ |.+. .+++.+.||.+-+|.+.. ....+.+.||..++++-.|.| +|+++++
T Consensus 156 WH-------p~a~---illAG~~DGsvWmw~ip~---------------~~~~kv~~Gh~~~ct~G~f~p---dGKr~~t 207 (399)
T KOG0296|consen 156 WH-------PRAH---ILLAGSTDGSVWMWQIPS---------------QALCKVMSGHNSPCTCGEFIP---DGKRILT 207 (399)
T ss_pred ec-------cccc---EEEeecCCCcEEEEECCC---------------cceeeEecCCCCCcccccccC---CCceEEE
Confidence 77 6652 666667799999999975 346778899999999999999 9999999
Q ss_pred EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
+..||+|++||..+++++.++..........+.+ +..+..++.|..++.+++-+..
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~---~~~~~~~~~g~~e~~~~~~~~~--------------------- 263 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL---NLAGSTLTKGNSEGVACGVNNG--------------------- 263 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccc---ccccceeEeccCCccEEEEccc---------------------
Confidence 9999999999999999999887544333333333 5677889999999999988876
Q ss_pred CceeeEeecccccceeeEEEe--------cCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec
Q 003208 233 DFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 301 (839)
.++.+.... +++..+.++.+.| .-+..|+|+.||+|.|||+.....
T Consensus 264 ------------sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----------- 320 (399)
T KOG0296|consen 264 ------------SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----------- 320 (399)
T ss_pred ------------cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----------
Confidence 333333333 4555555555544 557789999999999999988766
Q ss_pred eEeeccccceEEeEECC-CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 302 SVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 302 ~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+....|...|..+.|.+ .+|++++.+|.|+.||. +|+++..+.+|.. +|.+++++|+.++++|++.|++.++|+.
T Consensus 321 R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 37778999999999996 89999999999999999 9999999999998 7999999999999999999999999986
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=8.7e-30 Score=234.40 Aligned_cols=280 Identities=20% Similarity=0.318 Sum_probs=232.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC-CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
|.+.|..+.|+ |+ +.++++|. |..|.+|++.. .+-..++++|.+ .|.++.|. +|+. .++.+
T Consensus 46 h~geI~~~~F~--P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~-------~d~s---~i~S~ 108 (338)
T KOG0265|consen 46 HKGEIYTIKFH--PD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGM-------RDGS---HILSC 108 (338)
T ss_pred CcceEEEEEEC--CC----CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeec-------cCCC---EEEEe
Confidence 88999999999 99 89999987 99999999653 445667777665 79999999 8885 77888
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
+.|++++.||.++ ++.++..++|.+-|+.+..+. ....++.+++.|+++++||+++...++++
T Consensus 109 gtDk~v~~wD~~t---------------G~~~rk~k~h~~~vNs~~p~r--rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 109 GTDKTVRGWDAET---------------GKRIRKHKGHTSFVNSLDPSR--RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred cCCceEEEEeccc---------------ceeeehhccccceeeecCccc--cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 8899999999997 678889999999999998433 23457789999999999999988887776
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
...- .+.++.| ..++..+.+|+.|+.|++||++ .....+.+.
T Consensus 172 ~~ky--qltAv~f---~d~s~qv~sggIdn~ikvWd~r---------------------------------~~d~~~~ls 213 (338)
T KOG0265|consen 172 ENKY--QLTAVGF---KDTSDQVISGGIDNDIKVWDLR---------------------------------KNDGLYTLS 213 (338)
T ss_pred ccce--eEEEEEe---cccccceeeccccCceeeeccc---------------------------------cCcceEEee
Confidence 4332 2444444 5778899999999999999998 778889999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc----cceEEeEEC--CCEEEEEeCC
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----ARVWDCCLT--DSFIITAGED 327 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~--~~~l~s~~~d 327 (839)
||.+.|+.+..+|+|.++.+-+.|.++++||++..... .+.++ .+.+|. .....++|+ +..+-.|+.|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~----~R~v~--if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS----QRCVK--IFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCC----CceEE--EeecchhhhhhhcceeeccCCCCcccccccc
Confidence 99999999999999999999999999999999876542 22232 444432 234456777 4788899999
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEE
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~i 374 (839)
..+++||. ..+.+..+.+|.+ .|.+++|+|...+|.+++.|.+|.+
T Consensus 288 r~vyvwd~~~r~~lyklpGh~g-svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLPGHYG-SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ceEEEeecccccEEEEcCCcce-eEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999 5688999999999 6999999999999999999999876
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-27 Score=241.82 Aligned_cols=479 Identities=13% Similarity=0.136 Sum_probs=325.7
Q ss_pred CCcCccccccCCCcee---------eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 2 GKKDLSEWRLDVGQYL---------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~~---------~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
.||+|.+|++...-+. +.|-+|+|+ +. ++++-+|.+|.|.-||+.+++.+..++...+ .|-+|+
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsia 117 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EG----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIA 117 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cC----CeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEE
Confidence 4789999999987633 457899999 76 8888888899999999999999998887554 799999
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
.+ |.+. .+.+.+.||.+..++...+. .+....+...++.|.++.|+| ++..||+
T Consensus 118 i~-------p~~~---~l~IgcddGvl~~~s~~p~~-------------I~~~r~l~rq~sRvLslsw~~---~~~~i~~ 171 (691)
T KOG2048|consen 118 IN-------PENT---ILAIGCDDGVLYDFSIGPDK-------------ITYKRSLMRQKSRVLSLSWNP---TGTKIAG 171 (691)
T ss_pred eC-------Cccc---eEEeecCCceEEEEecCCce-------------EEEEeecccccceEEEEEecC---CccEEEe
Confidence 99 5541 44444578977777776543 455566666779999999999 9999999
Q ss_pred EeCCCcEEEEecCCCceEEEE-------ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 153 GCSDNSIRVWDISNSSIILEV-------HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
|+.||.|++||..++..+..+ .....+++|++.+. ....|++|+.-|.|.+||..
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~tI~sgDS~G~V~FWd~~-------------- 233 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDSTIASGDSAGTVTFWDSI-------------- 233 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecCcEEEecCCceEEEEccc--------------
Confidence 999999999999998877622 23356889999883 55689999999999999998
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
.+..+..+..|...|.+++..+++.++++++.|+.|.-+...+... +.+......
T Consensus 234 -------------------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~------~wv~~~~r~ 288 (691)
T KOG2048|consen 234 -------------------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS------EWVINSRRD 288 (691)
T ss_pred -------------------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc------ceeeecccc
Confidence 6778888889999999999999999999999999999998877643 122212455
Q ss_pred ccccceEEeEECCCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeC--------CCcEEEEec
Q 003208 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF--------DSAIKVHQF 377 (839)
Q Consensus 306 ~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~--------dg~i~iw~~ 377 (839)
.|...|.+++..+..+++|+.|.++.+-.... .....|.. -...|.+..+.++.. +..+.+|.+
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~---~~~~~h~~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSRE---FKNMDHRQ-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccc---cCchhhhc-----cccccccceeecCccceEEEEeccccccceec
Confidence 78888999999999999999999988765421 11111211 011122233333333 334445554
Q ss_pred CCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEE
Q 003208 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (839)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 457 (839)
.....+. +. +...++.+. ......|.+.+.+|+|.+++.+.-.....+++......+...
T Consensus 361 GS~~~~g---~~------~~~~Llkl~-----------~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 361 GSVILQG---EY------NYIHLLKLF-----------TKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred cCccccc---cc------Chhhheeee-----------cCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 2211110 00 111122222 222356999999999998887765555555555443322212
Q ss_pred EeeecC-CCceEEeeecCCCCCCCCCCCcEEEEeC-CCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCC
Q 003208 458 ILQVSE-GMPIICMDLLSNEPKYPCGIDDWVALGD-GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (839)
Q Consensus 458 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 535 (839)
+-.... ..+...+.+.. +.+.++..+ ....+..+++++...+.......+ .....+.. +..+++|
T Consensus 421 v~~~~~~~~~a~~i~fti--------d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---~~~~~I~~--l~~SsdG 487 (691)
T KOG2048|consen 421 VDDVPLALLDASAISFTI--------DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---AKCPSISR--LVVSSDG 487 (691)
T ss_pred eccchhhhccceeeEEEe--------cCceEEEEecccceeEEEEecCcchhhhhccccc---cCCCccee--EEEcCCC
Confidence 111110 01111222211 224444444 677888888876544332222111 11111222 4578999
Q ss_pred eEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeee-cCCCEEEEecCCccEEEEecccc
Q 003208 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS-FEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 536 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s-~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
.|+++.+..|.|.+|++++.+. . .+...-...+|+++++ ++...|+.+..++.++=||++..
T Consensus 488 ~yiaa~~t~g~I~v~nl~~~~~-~--------------~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLETLES-H--------------LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred CEEEEEeccceEEEEEccccee-e--------------cchhccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 9999999999999999997653 1 1111224679999999 55779999999999999999543
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.6e-29 Score=224.54 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=225.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC---eeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
|++.|-.+|++ |. .|.+|++++ |..||||+...+ .....+...+.-.|..++|+ |.| .+|
T Consensus 13 h~~r~W~~awh--p~---~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-------p~g----~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWH--PG---KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-------PHG----RYL 76 (312)
T ss_pred CCCcEEEEEec--cC---CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-------CCC----cEE
Confidence 78899999999 75 256788877 899999998753 33344444444479999999 888 455
Q ss_pred EE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC---
Q 003208 92 AL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--- 167 (839)
Q Consensus 92 ~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~--- 167 (839)
++ +-|.++.||.-..+. ++++..+.||...|.|++|++ +|.+||+++.|..|-||.+...
T Consensus 77 a~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~---sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSA---SGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred EEeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcC---CCCEEEEeeCCCeEEEEEecCCCcE
Confidence 55 559999999877554 899999999999999999999 9999999999999999999744
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
+++..++.|... +-.+.+ -|...+|++++.|++|++|+-.. ...-.
T Consensus 141 ec~aVL~~HtqD-VK~V~W---HPt~dlL~S~SYDnTIk~~~~~~------------------------------dddW~ 186 (312)
T KOG0645|consen 141 ECIAVLQEHTQD-VKHVIW---HPTEDLLFSCSYDNTIKVYRDED------------------------------DDDWE 186 (312)
T ss_pred EEEeeecccccc-ccEEEE---cCCcceeEEeccCCeEEEEeecC------------------------------CCCee
Confidence 345556655432 222333 26778999999999999998651 11567
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCC
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~d 327 (839)
+.+.+.+|++.|.+++|+|.|.+|++|++|++++||..... ....|...++.+.|....|+|++.|
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------------~~~~~sr~~Y~v~W~~~~IaS~ggD 252 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------------LSGMHSRALYDVPWDNGVIASGGGD 252 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------------cchhcccceEeeeecccceEeccCC
Confidence 88999999999999999999999999999999999987642 3345778899999998899999999
Q ss_pred CeEEEEcCCCc-------eE-EEeecccCCceEEEEEccC-CCEEEEEeCCCcEEEEecC
Q 003208 328 CTCRVWGSDGK-------QL-KMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 328 g~i~vw~~~~~-------~~-~~~~~h~~~~i~~~~~~~~-~~~l~t~~~dg~i~iw~~~ 378 (839)
+.|+++.-+.. .+ +.-..|.. .|.+++|+|. .++|++|+.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999986311 11 22345666 6999999995 6799999999999999863
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-26 Score=235.65 Aligned_cols=501 Identities=14% Similarity=0.138 Sum_probs=333.1
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC-eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
.+|+||||+ .+ .+.||++. +|.|.||++..+ -....+.+++...|.+++|+ +.+ +++.++.
T Consensus 26 s~I~slA~s--~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-------e~~----RLFS~g~ 88 (691)
T KOG2048|consen 26 SEIVSLAYS--HK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-------EGG----RLFSSGL 88 (691)
T ss_pred cceEEEEEe--cc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-------cCC----eEEeecC
Confidence 569999999 54 34566666 999999999875 34556777777789999999 666 8999999
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe-
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH- 174 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~- 174 (839)
+|+|.-||+.+ +++...+....+.|++++.+| .++.++.|+.||.+..++...++......
T Consensus 89 sg~i~EwDl~~---------------lk~~~~~d~~gg~IWsiai~p---~~~~l~IgcddGvl~~~s~~p~~I~~~r~l 150 (691)
T KOG2048|consen 89 SGSITEWDLHT---------------LKQKYNIDSNGGAIWSIAINP---ENTILAIGCDDGVLYDFSIGPDKITYKRSL 150 (691)
T ss_pred CceEEEEeccc---------------CceeEEecCCCcceeEEEeCC---ccceEEeecCCceEEEEecCCceEEEEeec
Confidence 99999999986 667777888889999999999 89999999999988888887777655433
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE----
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF---- 250 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (839)
..+.+-++++.+ .+++..|++|+.||.|++||.. .+..++
T Consensus 151 ~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~---------------------------------~~~t~~~~~~ 194 (691)
T KOG2048|consen 151 MRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVK---------------------------------SGQTLHIITM 194 (691)
T ss_pred ccccceEEEEEe---cCCccEEEecccCceEEEEEcC---------------------------------CCceEEEeee
Confidence 444567888887 6889999999999999999998 222222
Q ss_pred ---EEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE
Q 003208 251 ---RLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (839)
Q Consensus 251 ---~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 324 (839)
.+. +-.--|.++.|-.++ .|++|...|+|.+||...+.+ ++ ....|.+.|.+++.. +++++++
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL-----iq-----S~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL-----IQ-----SHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred cccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch-----hh-----hhhhhhcceeEEEEcCCCCeEEEc
Confidence 111 133457888887554 799999999999999998876 33 667889999999988 5899999
Q ss_pred eCCCeEEEEcCCCc-----eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcc
Q 003208 325 GEDCTCRVWGSDGK-----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (839)
Q Consensus 325 ~~dg~i~vw~~~~~-----~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 399 (839)
|.|+.+..+...+. .......|.. -|.+++..++ .+++||.|..+.+-..+... +..|..
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~~---~~~h~~--------- 328 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREFK---NMDHRQ--------- 328 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEccccccC---chhhhc---------
Confidence 99999999988332 1222234444 5899998876 89999999998887653311 111110
Q ss_pred eEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCc---eeEEE--eeecCCCceEEeeecC
Q 003208 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSV---NWNKI--LQVSEGMPIICMDLLS 474 (839)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~--~~~~~~~~v~~~~~~~ 474 (839)
++. ..+ =..+...+..++++--....+..|.+...... ....+ +...+...+.|.+.+|
T Consensus 329 ------~~~-------~p~---~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP 392 (691)
T KOG2048|consen 329 ------KNL-------FPA---SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP 392 (691)
T ss_pred ------ccc-------ccc---cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC
Confidence 000 000 00112233334444433333333333222000 10111 1223355677777766
Q ss_pred CCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeC-CCCcEEEeeec
Q 003208 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLC 553 (839)
Q Consensus 475 ~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~~wd~~ 553 (839)
++ ++++.+.- ..+++|.++........... . .+..........++.|+..++.++ ....+..++++
T Consensus 393 dg--------~~Ia~st~-~~~~iy~L~~~~~vk~~~v~--~--~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~ 459 (691)
T KOG2048|consen 393 DG--------NLIAISTV-SRTKIYRLQPDPNVKVINVD--D--VPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELE 459 (691)
T ss_pred CC--------CEEEEeec-cceEEEEeccCcceeEEEec--c--chhhhccceeeEEEecCceEEEEecccceeEEEEec
Confidence 54 88888764 47889988754321111111 0 011111122234566666655555 66778888877
Q ss_pred CCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeec
Q 003208 554 DPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKG 633 (839)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (839)
........... ..+-...|+.|..|++|+|||+.+.+|.|.+|++.... ..++.
T Consensus 460 ~ps~kel~~~~-----------~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~-----------~~~l~---- 513 (691)
T KOG2048|consen 460 TPSFKELKSIQ-----------SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE-----------SHLLK---- 513 (691)
T ss_pred Ccchhhhhccc-----------cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce-----------eecch----
Confidence 65421111000 01235669999999999999999999999999998631 11111
Q ss_pred ccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecC
Q 003208 634 AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (839)
Q Consensus 634 ~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 672 (839)
..-+-.||.+.+++ .+...|+.+..|+.+.-++++..
T Consensus 514 ~rln~~vTa~~~~~--~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 514 VRLNIDVTAAAFSP--FVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred hccCcceeeeeccc--cccCcEEEEecCCeEEEEecchh
Confidence 00014699998885 44556788888999999999543
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.8e-31 Score=247.24 Aligned_cols=268 Identities=20% Similarity=0.322 Sum_probs=223.8
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
..|.|+.+. ...+++|. |.+|+|||..+-+.++.+.+|.+ .|.|+++. .. .++..++|
T Consensus 198 kgVYClQYD--------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-SVLCLqyd-------~r-----viisGSSD 256 (499)
T KOG0281|consen 198 KGVYCLQYD--------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-SVLCLQYD-------ER-----VIVSGSSD 256 (499)
T ss_pred CceEEEEec--------chhhhcccccCceEEeccccHHHHHhhhcCCC-cEEeeecc-------ce-----EEEecCCC
Confidence 468999987 45788888 99999999999888899998777 69999997 21 45555669
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE--EEe
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVH 174 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~--~~~ 174 (839)
.+|+|||+.+ ++++.++-+|.+.|..+.|+ ..++++++.|.++.|||+.....+. .+-
T Consensus 257 sTvrvWDv~t---------------ge~l~tlihHceaVLhlrf~-----ng~mvtcSkDrsiaVWdm~sps~it~rrVL 316 (499)
T KOG0281|consen 257 STVRVWDVNT---------------GEPLNTLIHHCEAVLHLRFS-----NGYMVTCSKDRSIAVWDMASPTDITLRRVL 316 (499)
T ss_pred ceEEEEeccC---------------CchhhHHhhhcceeEEEEEe-----CCEEEEecCCceeEEEeccCchHHHHHHHH
Confidence 9999999997 66888999999999999995 4789999999999999997654321 111
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
..+...+..+.| +.++|++++.|.+|++|+.. +...+..+.|
T Consensus 317 vGHrAaVNvVdf-----d~kyIVsASgDRTikvW~~s---------------------------------t~efvRtl~g 358 (499)
T KOG0281|consen 317 VGHRAAVNVVDF-----DDKYIVSASGDRTIKVWSTS---------------------------------TCEFVRTLNG 358 (499)
T ss_pred hhhhhheeeecc-----ccceEEEecCCceEEEEecc---------------------------------ceeeehhhhc
Confidence 223334555554 56699999999999999998 8889999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEc
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~ 334 (839)
|...|.|+.+ .++++++||.|.+|++||+..+.+ ++ .+.||+.-|.|+.|.++.+++|+.||+|+|||
T Consensus 359 HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c-----LR-----vLeGHEeLvRciRFd~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 359 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-----LR-----VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 426 (499)
T ss_pred ccccceehhc--cCeEEEecCCCceEEEEeccccHH-----HH-----HHhchHHhhhheeecCceeeeccccceEEEEe
Confidence 9999999987 578999999999999999999887 33 88999999999999999999999999999999
Q ss_pred C-CCc---------eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 335 S-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 335 ~-~~~---------~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+ .+. ++..+..|.+ .|..+.|. ...+++++.|.+|.+||+..
T Consensus 427 l~aaldpra~~~~~Cl~~lv~hsg-RVFrLQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 427 LQAALDPRAPASTLCLRTLVEHSG-RVFRLQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred cccccCCcccccchHHHhhhhccc-eeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence 8 321 4455667888 49999985 46799999999999999844
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=238.74 Aligned_cols=257 Identities=20% Similarity=0.353 Sum_probs=215.3
Q ss_pred CCCcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC-CeeeeEEeeecCceEEeE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGI 71 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~-~~~~~~~~~~~~~~v~~i 71 (839)
|+|.+|++||..+++ |...|..|+|+ .. |++|++++ |-.+++||.++ -+.++.+..++. .|.++
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~----Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-~vS~V 199 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFD--AS----GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-GVSSV 199 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEe--cC----ccEEEecCCccchhheeHHHHHHHHHHhcCccc-ceeeE
Confidence 579999999999987 88889999999 66 89999988 66699999876 345556666554 59999
Q ss_pred EecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE
Q 003208 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (839)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la 151 (839)
+|- |.| +.++.++.|++|+.|++++ +.++.++.+|+.||.-++.+. ||.++|
T Consensus 200 ~f~-------P~g---d~ilS~srD~tik~We~~t---------------g~cv~t~~~h~ewvr~v~v~~---DGti~A 251 (406)
T KOG0295|consen 200 FFL-------PLG---DHILSCSRDNTIKAWECDT---------------GYCVKTFPGHSEWVRMVRVNQ---DGTIIA 251 (406)
T ss_pred EEE-------ecC---CeeeecccccceeEEeccc---------------ceeEEeccCchHhEEEEEecC---CeeEEE
Confidence 999 555 2788888999999999997 778999999999999999998 999999
Q ss_pred EEeCCCcEEEEecCCCceEEEEe---cCCceeEEEEee-------cc-CCccceEEEEeecCCeEEEEEeeccccccCCC
Q 003208 152 IGCSDNSIRVWDISNSSIILEVH---SPERCLLYSMKL-------WG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 152 s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~s~~~-------~~-~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~ 220 (839)
+++.|.+|++|-+.++++...+. .+..++.+.-.. .. ....+.++++++.|++|++||+.
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--------- 322 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--------- 322 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc---------
Confidence 99999999999999986544443 333444432111 00 11134689999999999999999
Q ss_pred CCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeee
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
.+.++.++.||.+.|.+++|+|.|++|+|+.+|+++++||+++.++ .+
T Consensus 323 ------------------------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-----mk--- 370 (406)
T KOG0295|consen 323 ------------------------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-----MK--- 370 (406)
T ss_pred ------------------------CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-----ee---
Confidence 8899999999999999999999999999999999999999999766 22
Q ss_pred ceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC
Q 003208 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 301 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 335 (839)
.+..|+.-|+++.|+ -.+++||+-|.++++|..
T Consensus 371 --~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 --TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 777899999999998 469999999999999963
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=265.76 Aligned_cols=281 Identities=20% Similarity=0.357 Sum_probs=236.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe--eeeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
+...|+|+.|+ ++ +++++++. ++.+++|+..+++ ++..+..|.. .|.+++|+ |+++ .++.
T Consensus 158 ~~~sv~~~~fs--~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs-------~d~~---~l~s 220 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFS-------PDGS---YLLS 220 (456)
T ss_pred ccCceEEEEEc--CC----CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEEC-------CCCc---EEEE
Confidence 46789999999 99 77888876 9999999998877 6777766555 69999999 8884 5566
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
++.|++|+|||+... ...++++++|...|++++|+| .++++++|+.|++|+|||+++++++..
T Consensus 221 ~s~D~tiriwd~~~~--------------~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDD--------------GRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred ecCCceEEEeeccCC--------------CeEEEEecCCCCceEEEEecC---CCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 667999999999432 578899999999999999999 889999999999999999999999999
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce--eeE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLF 250 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (839)
+..+... +.++.| ++++.+|++++.|+.|++||+. .+. +..
T Consensus 284 l~~hs~~-is~~~f---~~d~~~l~s~s~d~~i~vwd~~---------------------------------~~~~~~~~ 326 (456)
T KOG0266|consen 284 LKGHSDG-ISGLAF---SPDGNLLVSASYDGTIRVWDLE---------------------------------TGSKLCLK 326 (456)
T ss_pred eeccCCc-eEEEEE---CCCCCEEEEcCCCccEEEEECC---------------------------------CCceeeee
Confidence 9888764 445555 7999999999999999999998 444 456
Q ss_pred EEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe---EEC--CCEEEE
Q 003208 251 RLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC---CLT--DSFIIT 323 (839)
Q Consensus 251 ~~~~h~~~--V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~---~~~--~~~l~s 323 (839)
.+.++... +.++.|+|++.++++++.|+++++||+..... .. ...+|...+.++ .+. +.++++
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-----VG-----TYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-----ee-----eecccCCcceeEecccccCCCCeEEE
Confidence 66777666 99999999999999999999999999998765 22 556666544332 222 689999
Q ss_pred EeCCCeEEEEcC-CCceEEEeecc-cCCceEEEEEccCCCEEEEEe--CCCcEEEEecC
Q 003208 324 AGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~~~h-~~~~i~~~~~~~~~~~l~t~~--~dg~i~iw~~~ 378 (839)
|+.|+.|++|+. ++..+..+.+| .. .+..++++|...++++++ .|+.+++|..+
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h~~~-~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGHSKA-AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCCCCC-ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999 68888999999 65 689999999999999998 78999999753
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=242.11 Aligned_cols=279 Identities=18% Similarity=0.230 Sum_probs=225.4
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEE
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~ 209 (839)
.-...|..+.|.| +|..|++|+..|.+.+|+.........++ .+.+.+.++.+ +.++.++++|+.+|.|++|+
T Consensus 94 Kvkc~V~~v~WtP---eGRRLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~w---s~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 94 KVKCPVNVVRWTP---EGRRLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKW---SHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ccccceeeEEEcC---CCceeEeecccccEEEecCceeeHHHHhh-hhcccceeEEE---ccCCCEEEEcCCCceEEecc
Confidence 3456899999999 99999999999999999984322111122 22334555555 58899999999999999999
Q ss_pred eeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
.. ...+..+.+|. ..|.+++|+|+...+++||+|++|+|||....
T Consensus 167 pn----------------------------------mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 167 PN----------------------------------MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred cc----------------------------------hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 86 33344455555 89999999999999999999999999999886
Q ss_pred ccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEE
Q 003208 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t 365 (839)
+.. ..+.+|.-.|.++.|++ .++++|+.|..|++||. +|.++.++..|.. .|..+.|++++++|+|
T Consensus 213 kee----------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 213 KEE----------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLT 281 (464)
T ss_pred chh----------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEE
Confidence 552 37799999999999994 79999999999999999 9999999999998 6999999999999999
Q ss_pred EeCCCcEEEEecC-CcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec--CCeEEEEeccceE
Q 003208 366 AGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS--EDTLYIATNHGYL 442 (839)
Q Consensus 366 ~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~g~i 442 (839)
+|.|..++++|++ .+.++++++|. +.+++++++| .+.+.+++.+|.+
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~Hk------------------------------kdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGHK------------------------------KDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcch------------------------------hhheeeccccccccceeeccCCCce
Confidence 9999999999997 35566666554 5689999998 4566777889999
Q ss_pred EEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEE
Q 003208 443 YHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (839)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~ 501 (839)
+.+.+.-.... ......++..|++++.+|-+ .+|++|+.|.++++|.-
T Consensus 332 vh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlG--------hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 332 VHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLG--------HILATGSNDRTVRFWTR 379 (464)
T ss_pred EEEeccccccc---cCCCcccccceeeeeccccc--------eeEeecCCCcceeeecc
Confidence 88876522111 12233457889999988765 89999999999999965
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-28 Score=219.64 Aligned_cols=282 Identities=17% Similarity=0.270 Sum_probs=225.1
Q ss_pred eEEEEecCCCCCCCcceEEEee-------CCeeEEEECCCCeeeeEEeeec-CceEEeEEecccccccCCCccceeeEEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-------~~~v~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
.++.|| |- -.++++++.. +|.+.|-+...++-+..++.+. ...+.+++|+++ .++ .+++
T Consensus 12 ysvqfS--Pf--~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-----~e~----~~~~ 78 (311)
T KOG0277|consen 12 YSVQFS--PF--VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-----HEN----QVIA 78 (311)
T ss_pred ceeEec--cc--ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-----Ccc----eEEE
Confidence 467888 63 2245555522 4899999987666666665443 335899999965 333 7899
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
++|||+++|||+..+ ..+++.++.|...|.++.|++ .++..+++++.|++|++|+...++.+.+
T Consensus 79 a~GDGSLrl~d~~~~--------------s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMP--------------SKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred EecCceEEEeccCCC--------------CcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEe
Confidence 999999999997654 357889999999999999998 3566778889999999999999999999
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
+.++..+ +|...+. +...+++++++.|+.+++||++. .++.+. +
T Consensus 143 f~gh~~~-Iy~a~~s--p~~~nlfas~Sgd~~l~lwdvr~--------------------------------~gk~~~-i 186 (311)
T KOG0277|consen 143 FNGHNSC-IYQAAFS--PHIPNLFASASGDGTLRLWDVRS--------------------------------PGKFMS-I 186 (311)
T ss_pred ecCCccE-EEEEecC--CCCCCeEEEccCCceEEEEEecC--------------------------------CCceeE-E
Confidence 8886654 7777774 44567999999999999999981 334443 7
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC---CEEEEEeCCC
Q 003208 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDC 328 (839)
Q Consensus 253 ~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg 328 (839)
..|...|.++.|+. +...+++|+.|+.||.||+++-+.. + ..+.+|.-.|..++|+| ..|++++.|-
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-------l--~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-------L--FELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc-------c--eeecCCceEEEEEecCcchhhHhhhccccc
Confidence 88999999999997 5678999999999999999986541 1 47899999999999995 7899999999
Q ss_pred eEEEEcC--CCceEEEeecccCCceEEEEEcc-CCCEEEEEeCCCcEEEEec
Q 003208 329 TCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 329 ~i~vw~~--~~~~~~~~~~h~~~~i~~~~~~~-~~~~l~t~~~dg~i~iw~~ 377 (839)
++||||. ....+.+...|.. -+..+.|++ +..++|+++.|+.+++|+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 9999999 3345566666766 588888876 4579999999999999985
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.3e-27 Score=244.16 Aligned_cols=278 Identities=22% Similarity=0.432 Sum_probs=232.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ +.+++++. ++.|++|+..+++....+..+.. .+..+.|+ |+++ .+++++
T Consensus 8 h~~~i~~~~~~--~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~-------~~~~---~l~~~~ 70 (289)
T cd00200 8 HTGGVTCVAFS--PD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS-------ADGT---YLASGS 70 (289)
T ss_pred cCCCEEEEEEc--CC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEEC-------CCCC---EEEEEc
Confidence 77899999999 98 78888877 89999999998887777776554 58899999 7763 555556
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.++.|++|++.. .+....+..|...|.++.|+| ++.++++++.|+.|++||+.+++....+.
T Consensus 71 ~~~~i~i~~~~~---------------~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 71 SDKTIRLWDLET---------------GECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred CCCeEEEEEcCc---------------ccceEEEeccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 699999999985 245566778988999999999 88888888889999999999888877776
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
.+.. .+.++.+ ++++.++++++.++.|++||+. ..+.+..+..
T Consensus 133 ~~~~-~i~~~~~---~~~~~~l~~~~~~~~i~i~d~~---------------------------------~~~~~~~~~~ 175 (289)
T cd00200 133 GHTD-WVNSVAF---SPDGTFVASSSQDGTIKLWDLR---------------------------------TGKCVATLTG 175 (289)
T ss_pred cCCC-cEEEEEE---cCcCCEEEEEcCCCcEEEEEcc---------------------------------ccccceeEec
Confidence 4432 3555655 4667888888889999999998 5666777888
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~v 332 (839)
|...|.++.|+|+++.+++++.|+.|++||+..... . ..+..|...+.++.|++ .++++++.|+.+++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----L-----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----e-----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999999999999987554 1 14447888999999984 67777777999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
|++ .++.+..+..|.. .|.+++|+|++.++++++.||.+++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999 6788888888877 699999999999999999999999996
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.5e-27 Score=275.44 Aligned_cols=285 Identities=18% Similarity=0.240 Sum_probs=220.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC----e----eeeEEeeecCceEEeEEecccccccCCCccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----T----LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~----~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
|.+.|++++|+ |+ +.++++|+ |+.|+|||..+. . .+..+. ....|.+++|+ +..+
T Consensus 482 ~~~~V~~i~fs--~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~-------~~~~- 545 (793)
T PLN00181 482 SSNLVCAIGFD--RD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWN-------SYIK- 545 (793)
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEec-------cCCC-
Confidence 67889999999 98 78888877 899999997542 1 112222 23368899998 4321
Q ss_pred eeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 87 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
..+++++.|++|+|||+.. .+.+..+.+|.+.|++++|+| .++.+|++|+.|++|++||+.+
T Consensus 546 -~~las~~~Dg~v~lWd~~~---------------~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 546 -SQVASSNFEGVVQVWDVAR---------------SQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred -CEEEEEeCCCeEEEEECCC---------------CeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECCC
Confidence 1455556699999999975 456778889999999999996 2678999999999999999999
Q ss_pred CceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
+..+..+..+. .+.++.+. ++++.+|++|+.||.|++||++ ..
T Consensus 608 ~~~~~~~~~~~--~v~~v~~~--~~~g~~latgs~dg~I~iwD~~---------------------------------~~ 650 (793)
T PLN00181 608 GVSIGTIKTKA--NICCVQFP--SESGRSLAFGSADHKVYYYDLR---------------------------------NP 650 (793)
T ss_pred CcEEEEEecCC--CeEEEEEe--CCCCCEEEEEeCCCeEEEEECC---------------------------------CC
Confidence 88887776442 34455542 4678999999999999999997 32
Q ss_pred -eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEE
Q 003208 247 -VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (839)
Q Consensus 247 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s 323 (839)
.++..+.+|...|.++.|. ++.+|++++.|++|++||+...... .....+ ..+.+|...+.++.|+ +.+|++
T Consensus 651 ~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--~~~~~l--~~~~gh~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 651 KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--INETPL--HSFMGHTNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc--cCCcce--EEEcCCCCCeeEEEEcCCCCEEEE
Confidence 2456778999999999997 6789999999999999999753210 001112 2677899999999998 689999
Q ss_pred EeCCCeEEEEcC-CCceEEEe-------------ecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 324 AGEDCTCRVWGS-DGKQLKMI-------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~-------------~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
|+.|+.|++|+. ...++..+ ..+.. .|.+++|+|++..|++|+.||.|++|++
T Consensus 726 gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 726 GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999997 33332221 12233 5999999999999999999999999986
No 54
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=9.5e-29 Score=257.17 Aligned_cols=249 Identities=18% Similarity=0.319 Sum_probs=204.7
Q ss_pred CCcCccccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccC
Q 003208 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEG 81 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 81 (839)
.|..|++|.++..+ ..++-..++-..+| ....|-.+.+.|-.++....++.+|.+ +|.+..|+
T Consensus 398 ~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d--------~~sad~~~~~~D~~~~~~~~~L~GH~G-PVyg~sFs------- 460 (707)
T KOG0263|consen 398 VDSSVRVWSLTPKK-LKKLKDASDLSNID--------TESADVDVDMLDDDSSGTSRTLYGHSG-PVYGCSFS------- 460 (707)
T ss_pred cccEEEEEecchhh-hccccchhhhcccc--------ccccchhhhhccccCCceeEEeecCCC-ceeeeeec-------
Confidence 35677888877543 33343333331111 111233477788777777777887665 89999999
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEE
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~v 161 (839)
|+.+ .++.++.|+++|+|.+.+ +..+..++||..+|.++.|+| .|-++|||+.|++-++
T Consensus 461 Pd~r---fLlScSED~svRLWsl~t---------------~s~~V~y~GH~~PVwdV~F~P---~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 461 PDRR---FLLSCSEDSSVRLWSLDT---------------WSCLVIYKGHLAPVWDVQFAP---RGYYFATASHDQTARL 519 (707)
T ss_pred cccc---ceeeccCCcceeeeeccc---------------ceeEEEecCCCcceeeEEecC---CceEEEecCCCceeee
Confidence 8774 667777799999999987 677888899999999999999 9999999999999999
Q ss_pred EecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
|......+++.+.+|... +-++.| -|+..++++|+.|.+|++||+.
T Consensus 520 Ws~d~~~PlRifaghlsD-V~cv~F---HPNs~Y~aTGSsD~tVRlWDv~------------------------------ 565 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSD-VDCVSF---HPNSNYVATGSSDRTVRLWDVS------------------------------ 565 (707)
T ss_pred eecccCCchhhhcccccc-cceEEE---CCcccccccCCCCceEEEEEcC------------------------------
Confidence 999988888777766543 334555 3889999999999999999998
Q ss_pred ccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC
Q 003208 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (839)
Q Consensus 242 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~ 319 (839)
++..++.|.||.++|.+|+|+|+|++|++|+.|+.|++||+..+.. + ..+.+|++.|.++.|+ ++
T Consensus 566 ---~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-----v-----~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 566 ---TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL-----V-----KQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred ---CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc-----h-----hhhhcccCceeEEEEecCCC
Confidence 7888999999999999999999999999999999999999999776 3 3788999999999999 89
Q ss_pred EEEEEeCCCeEEEEcC
Q 003208 320 FIITAGEDCTCRVWGS 335 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~ 335 (839)
.|++|+.|++|++||+
T Consensus 633 vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCCCeEEEEEc
Confidence 9999999999999998
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=211.23 Aligned_cols=274 Identities=18% Similarity=0.242 Sum_probs=221.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEE-eeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~-g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
+.++|.++.|+ -| |+|.++ |.|.+|++||...|.++++...|. ..|...+.+ .|+. .+.+++
T Consensus 16 ~qgaV~avryN--~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s-------~Dns---kf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALS-------SDNS---KFASCG 78 (307)
T ss_pred cccceEEEEEc--cC----CCEEEEcCCCceEEeecccccceeeeecCCC-ceeeecccc-------cccc---ccccCC
Confidence 67899999999 88 677666 559999999999999999999754 469999988 6662 555567
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC--ceEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILE 172 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~--~~~~~ 172 (839)
+|+.+.+||+.+ ++.++.+++|...|+.++|+. +...+++|+-|..+++||.+.. ++++.
T Consensus 79 gDk~v~vwDV~T---------------Gkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 GDKAVQVWDVNT---------------GKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred CCceEEEEEccc---------------CeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccch
Confidence 799999999997 678899999999999999998 8899999999999999999754 45555
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
+... ...+.++.. .+..|++|+.||+++.||++ .+......
T Consensus 141 ldea-~D~V~Si~v-----~~heIvaGS~DGtvRtydiR---------------------------------~G~l~sDy 181 (307)
T KOG0316|consen 141 LDEA-KDGVSSIDV-----AEHEIVAGSVDGTVRTYDIR---------------------------------KGTLSSDY 181 (307)
T ss_pred hhhh-cCceeEEEe-----cccEEEeeccCCcEEEEEee---------------------------------cceeehhh
Confidence 4433 233556543 56789999999999999999 55555444
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE--EeEEC--CCEEEEEeCCC
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLT--DSFIITAGEDC 328 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~--~~~l~s~~~dg 328 (839)
.| .+|++++|+++++..+.++.|+++++.|-.+++. ++ ...+|...=. .+++. ...+++|++||
T Consensus 182 ~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-----L~-----sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 182 FG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-----LK-----SYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred cC--CcceeEEecCCCCEEEEeeccceeeecccchhHH-----HH-----HhcccccceeeeeeeecccceeEEeccCCc
Confidence 44 5899999999999999999999999999999877 33 6667765433 33444 68999999999
Q ss_pred eEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
.|.+||+ +...+..+..+..-.|..++++|...-++++... .+.+|-
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 9999999 8888889988877348899999987767666644 445554
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.3e-27 Score=216.73 Aligned_cols=282 Identities=14% Similarity=0.234 Sum_probs=224.0
Q ss_pred EEeeecCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEE
Q 003208 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (839)
Q Consensus 59 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 137 (839)
.+.+|++ .|..+.|+ |+| ..|+++| |+.|.+|+.... .+-...+++|+++|..
T Consensus 42 ~l~gh~g-eI~~~~F~-------P~g----s~~aSgG~Dr~I~LWnv~gd--------------ceN~~~lkgHsgAVM~ 95 (338)
T KOG0265|consen 42 LLPGHKG-EIYTIKFH-------PDG----SCFASGGSDRAIVLWNVYGD--------------CENFWVLKGHSGAVME 95 (338)
T ss_pred hcCCCcc-eEEEEEEC-------CCC----CeEeecCCcceEEEEecccc--------------ccceeeeccccceeEe
Confidence 3444444 69999999 888 5666655 999999997642 3445677899999999
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccccc
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~ 217 (839)
+.|.+ ++..|++++.|.+|+.||+++++.+++++.+..+ +.++.- ..-...+|.+|+.|+++++||++
T Consensus 96 l~~~~---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R------ 163 (338)
T KOG0265|consen 96 LHGMR---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLDP--SRRGPQLVCSGSDDGTLKLWDIR------ 163 (338)
T ss_pred eeecc---CCCEEEEecCCceEEEEecccceeeehhccccce-eeecCc--cccCCeEEEecCCCceEEEEeec------
Confidence 99999 9999999999999999999999999999887765 333321 12334678889999999999998
Q ss_pred CCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCce
Q 003208 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 297 (839)
....++.+. -+.+++++.|..++..+++|+-|+.|++||++.....
T Consensus 164 ---------------------------~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~------ 209 (338)
T KOG0265|consen 164 ---------------------------KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL------ 209 (338)
T ss_pred ---------------------------ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce------
Confidence 455554443 4578999999999999999999999999999887662
Q ss_pred eeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCC-----CceEEEeecccC---CceEEEEEccCCCEEEEEe
Q 003208 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~-----~~~~~~~~~h~~---~~i~~~~~~~~~~~l~t~~ 367 (839)
..+.||..+|+.+..+ +.++.+-+.|+++++||+. .+++..+.+|.- +.....+|+|++..+..|+
T Consensus 210 ----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags 285 (338)
T KOG0265|consen 210 ----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS 285 (338)
T ss_pred ----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc
Confidence 5899999999999988 7899999999999999982 355777776542 2456778999999999999
Q ss_pred CCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeE-EEEeccceEEEE
Q 003208 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHT 445 (839)
Q Consensus 368 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~g~i~~~ 445 (839)
.|..+.+||..... .+..+.+|.+.|.++.|.|...+ +.++.+..|++.
T Consensus 286 ~dr~vyvwd~~~r~-----------------------------~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 286 ADRFVYVWDTTSRR-----------------------------ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ccceEEEeeccccc-----------------------------EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999985421 12334567788999999997654 455567666653
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=228.49 Aligned_cols=294 Identities=16% Similarity=0.216 Sum_probs=224.3
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 324 (839)
+..+.+..|++.|.-+.|+++|++|||++.|.+..+|.+..... ++.. .++.+|..+|.-+.|+ ++++++|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----~kl~--~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----FKLK--KTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----eeee--eeeecccCceEEEEECCCCCeEEec
Confidence 34556789999999999999999999999999999999876544 3333 3889999999999999 5899999
Q ss_pred eCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEe
Q 003208 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (839)
Q Consensus 325 ~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (839)
+.|-.+.+||+ +|.....+....+-.+.+.+|.|||..+++|+.|+.+..||+++..+...++...
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~------------- 354 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD------------- 354 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc-------------
Confidence 99999999999 7777766654433368999999999999999999999999998876665554331
Q ss_pred ecCCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCC
Q 003208 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (839)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 482 (839)
..|.+++..+||+ +++.+.+..+..++.-..... .+ ..+..+++++.++.+.
T Consensus 355 ----------------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr---~l--ise~~~its~~iS~d~------ 407 (519)
T KOG0293|consen 355 ----------------PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR---GL--ISEEQPITSFSISKDG------ 407 (519)
T ss_pred ----------------ceeEEEEEcCCCcEEEEEecccceeeechhhhhhh---cc--ccccCceeEEEEcCCC------
Confidence 2388999999995 445566777765543322211 12 2345677777776554
Q ss_pred CCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecC-CCeEEEEeCCCCcEEEeeecCCCCcccc
Q 003208 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (839)
Q Consensus 483 ~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 561 (839)
.++.+.-.+..+++||++......++ .++.....-+..||.- +.+++++|++|+.|++|+..+++.
T Consensus 408 --k~~LvnL~~qei~LWDl~e~~lv~kY-------~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl---- 474 (519)
T KOG0293|consen 408 --KLALVNLQDQEIHLWDLEENKLVRKY-------FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL---- 474 (519)
T ss_pred --cEEEEEcccCeeEEeecchhhHHHHh-------hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----
Confidence 78888889999999999754332221 1222223334467775 558999999999999999988763
Q ss_pred cCCccceeeeeeccccccCceEEEEeeecC-CCEEEEecCCccEEEEeccc
Q 003208 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~la~gs~dg~i~iw~~~~ 611 (839)
.+. ..+|...|+|++|+|. -.++|+|++||+|+||...+
T Consensus 475 ----------l~~-LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 475 ----------LAV-LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ----------eEe-ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 222 3589999999999986 45899999999999998764
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-27 Score=207.61 Aligned_cols=286 Identities=17% Similarity=0.191 Sum_probs=224.4
Q ss_pred eeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCC
Q 003208 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
..+.+..|+++|.++.|+- +|++.++++.|.+|++||...+.++++..++..- +..+.. +.++..+++|+.|.
T Consensus 9 r~~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E-VlD~~~---s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE-VLDAAL---SSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCce-eeeccc---cccccccccCCCCc
Confidence 4567889999999999999 9999999999999999999999999999877654 333333 46788999999999
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iw 283 (839)
.+.+||+. +++.++.+.+|.+.|+.++|+.+...+++|+.|.++++|
T Consensus 82 ~v~vwDV~---------------------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~w 128 (307)
T KOG0316|consen 82 AVQVWDVN---------------------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLW 128 (307)
T ss_pred eEEEEEcc---------------------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeEEE
Confidence 99999999 899999999999999999999999999999999999999
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCE
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~ 362 (839)
|.+.... ++++ .+..-...|.++...+..|++|+.||++|.||+ .|+...-+-+| ||+++.|+++++.
T Consensus 129 DCRS~s~------ePiQ--ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc 197 (307)
T KOG0316|consen 129 DCRSRSF------EPIQ--ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNC 197 (307)
T ss_pred EcccCCC------Cccc--hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCE
Confidence 9988654 3443 555667789999999999999999999999999 77766555444 7999999999999
Q ss_pred EEEEeCCCcEEEEecC-CcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccce
Q 003208 363 LVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (839)
Q Consensus 363 l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 441 (839)
.+.++.|+++++.|-+ ++.++.+.+|.. ..| .+.|.-...+...+.++.+|.
T Consensus 198 ~La~~l~stlrLlDk~tGklL~sYkGhkn--------~ey-------------------kldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 198 SLASSLDSTLRLLDKETGKLLKSYKGHKN--------MEY-------------------KLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred EEEeeccceeeecccchhHHHHHhccccc--------cee-------------------eeeeeecccceeEEeccCCce
Confidence 9999999999999984 577888888762 111 122332233457777889999
Q ss_pred EEEEEecCCCCceeEEEeeecCCC--ceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEE
Q 003208 442 LYHTKLCDMDSVNWNKILQVSEGM--PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (839)
Q Consensus 442 i~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~ 501 (839)
+++|++-+... +....... .+..++.+|.. .-++++. ++.+..|.-
T Consensus 251 Vy~wdLvd~~~-----~sk~~~~~~v~v~dl~~hp~~--------~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 251 VYFWDLVDETQ-----ISKLSVVSTVIVTDLSCHPTM--------DDFITAT-GHGDLFWYQ 298 (307)
T ss_pred EEEEEecccee-----eeeeccCCceeEEeeecccCc--------cceeEec-CCceeceee
Confidence 99999877543 22222222 24556666653 3344444 345566643
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.7e-27 Score=222.63 Aligned_cols=283 Identities=20% Similarity=0.275 Sum_probs=220.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|...|.+|... .+.+++|+ ||.++|||. .|+.+.++.+|.+ +|..+++...+ +.. ..++.++
T Consensus 104 hdDWVSsv~~~--------~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~n----~~~---~~fvsas 166 (423)
T KOG0313|consen 104 HDDWVSSVKGA--------SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-PIKSVAWVIKN----SSS---CLFVSAS 166 (423)
T ss_pred chhhhhhhccc--------CceEEEeecCCeeEEEec-CCceEEEEecCCc-ceeeeEEEecC----Ccc---ceEEEec
Confidence 55667777665 46888888 999999995 5888888887665 79977775221 111 1466667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-------
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------- 167 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~------- 167 (839)
-|+++++|.++.+.. ..+.++..+||...|-++...+ ++..+++|+.|.+|.||+..+.
T Consensus 167 ~Dqtl~Lw~~~~~~~-----------~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E~ 232 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGEN-----------KVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELES 232 (423)
T ss_pred CCceEEEEEecCchh-----------hhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCccccccc
Confidence 799999999986541 1334455569999999999999 9999999999999999993211
Q ss_pred ------------------ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 168 ------------------SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 168 ------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
.++.++.+|..+ +.++.| ++...+++++.|++|+.||+.
T Consensus 233 ~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~-Vs~V~w----~d~~v~yS~SwDHTIk~WDle------------------ 289 (423)
T KOG0313|consen 233 SSNRRRKKQKREKEGGTRTPLVTLEGHTEP-VSSVVW----SDATVIYSVSWDHTIKVWDLE------------------ 289 (423)
T ss_pred cchhhhhhhhhhhcccccCceEEecccccc-eeeEEE----cCCCceEeecccceEEEEEee------------------
Confidence 122333444332 445555 347789999999999999999
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (839)
.+..+..+.+ ...++++..+|..++|++|+.|+.+++||.+++.. .... ..+.+|..
T Consensus 290 ---------------tg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~-~s~~gH~n 346 (423)
T KOG0313|consen 290 ---------------TGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVS-QSLIGHKN 346 (423)
T ss_pred ---------------cccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeE-Eeeecchh
Confidence 5555555543 57899999999999999999999999999998754 2222 48899999
Q ss_pred ceEEeEEC---CCEEEEEeCCCeEEEEcC-CCc-eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 310 RVWDCCLT---DSFIITAGEDCTCRVWGS-DGK-QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 310 ~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~-~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.|.++.|+ ..+|++++.|+++++||+ ..+ ++..+.+|..+ |.++.|.. +..+++||.|.+|+++.-
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEeccC-CceEEeccCcceEEEecc
Confidence 99999999 368999999999999999 444 89999999985 99999974 568999999999999864
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=227.39 Aligned_cols=279 Identities=16% Similarity=0.260 Sum_probs=225.2
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe---eeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
|+..|--+.|| ++ |+|||+++ |.+..||++.... +..++.+|. .+|.-|.|| ||.+ .++
T Consensus 223 htdEVWfl~FS--~n----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-~~V~yi~wS-------PDdr---yLl 285 (519)
T KOG0293|consen 223 HTDEVWFLQFS--HN----GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-QPVSYIMWS-------PDDR---YLL 285 (519)
T ss_pred CCCcEEEEEEc--CC----CeeEeeccCCceEEEEEEecCcceeeeeeeeccc-CceEEEEEC-------CCCC---eEE
Confidence 88999999999 88 99999999 9999999976543 456666655 479999999 8874 667
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec-cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~ 170 (839)
+++-+..+.+||..++. +.+.+ .+|...+.+++|.| |+..+++|+.|+.+..||+. +..+
T Consensus 286 aCg~~e~~~lwDv~tgd---------------~~~~y~~~~~~S~~sc~W~p---Dg~~~V~Gs~dr~i~~wdlD-gn~~ 346 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGD---------------LRHLYPSGLGFSVSSCAWCP---DGFRFVTGSPDRTIIMWDLD-GNIL 346 (519)
T ss_pred ecCchHheeeccCCcch---------------hhhhcccCcCCCcceeEEcc---CCceeEecCCCCcEEEecCC-cchh
Confidence 77778899999998743 33333 34568899999999 99999999999999999995 4444
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
...++-....++.++. .+||.++++.+.|..|++++.. ......
T Consensus 347 ~~W~gvr~~~v~dlai---t~Dgk~vl~v~~d~~i~l~~~e---------------------------------~~~dr~ 390 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAI---TYDGKYVLLVTVDKKIRLYNRE---------------------------------ARVDRG 390 (519)
T ss_pred hcccccccceeEEEEE---cCCCcEEEEEecccceeeechh---------------------------------hhhhhc
Confidence 4444443345667766 6899999999999999999987 333222
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc--eEEeEEC---CCEEEEEe
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT---DSFIITAG 325 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~---~~~l~s~~ 325 (839)
+..-..+|+++..+.+++++++--.+..+.+||+..... ++ ...||... +..-+|. ..++++|+
T Consensus 391 -lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l-----v~-----kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 391 -LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL-----VR-----KYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred -cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH-----HH-----HhhcccccceEEEeccCCCCcceEEecC
Confidence 233457899999999999999999999999999997655 32 66777654 3344565 37999999
Q ss_pred CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecC
Q 003208 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 326 ~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~ 378 (839)
+|+.|+||+. +|+++..+.+|.. .|.+++|+|.. .++|++|.||+||||.+.
T Consensus 460 ED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999 9999999999998 79999999966 589999999999999874
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=247.45 Aligned_cols=286 Identities=19% Similarity=0.288 Sum_probs=228.4
Q ss_pred EeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEE
Q 003208 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (839)
Q Consensus 60 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (839)
+..++...|.++.|+ ++|+ .+.+++.++.+++|+..... ....+.+.+|...|.+++
T Consensus 154 ~~~~~~~sv~~~~fs-------~~g~---~l~~~~~~~~i~~~~~~~~~-------------~~~~~~l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFS-------PDGR---ALAAASSDGLIRIWKLEGIK-------------SNLLRELSGHTRGVSDVA 210 (456)
T ss_pred ecccccCceEEEEEc-------CCCC---eEEEccCCCcEEEeeccccc-------------chhhccccccccceeeeE
Confidence 333444579999999 8984 55555679999999995421 025666789999999999
Q ss_pred EeeccCCCcEEEEEeCCCcEEEEec-CCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccC
Q 003208 140 FLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 140 ~~~~~~~~~~las~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~ 218 (839)
|+| ++.++++++.|++|+|||+ ..+..++++.+|... +++++| ++++.++++|+.|++|++||++
T Consensus 211 fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~-v~~~~f---~p~g~~i~Sgs~D~tvriWd~~------- 276 (456)
T KOG0266|consen 211 FSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY-VTSVAF---SPDGNLLVSGSDDGTVRIWDVR------- 276 (456)
T ss_pred ECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-eEEEEe---cCCCCEEEEecCCCcEEEEecc-------
Confidence 999 9999999999999999999 556888888877654 578887 6888999999999999999999
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCcee
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 298 (839)
.+++...+.+|.+.|.+++|++++++|++++.|+.|++||+.++.. . .
T Consensus 277 --------------------------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~-----~-~ 324 (456)
T KOG0266|consen 277 --------------------------TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK-----L-C 324 (456)
T ss_pred --------------------------CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce-----e-e
Confidence 7889999999999999999999999999999999999999999873 0 1
Q ss_pred eeceEeecccc--ceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCC--ceEEEEEccCCCEEEEEeCCCc
Q 003208 299 VGSSVLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSA 371 (839)
Q Consensus 299 ~~~~~~~~h~~--~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~--~i~~~~~~~~~~~l~t~~~dg~ 371 (839)
. ..+.++.. ++++++|+ +.++++++.|+.+++||+ .+..+..+.+|... .+.+...++.+.++++|+.|+.
T Consensus 325 ~--~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 325 L--KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred e--ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence 1 14444444 59999998 689999999999999999 68999999998873 3444455788999999999999
Q ss_pred EEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEec---cceEEEE
Q 003208 372 IKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN---HGYLYHT 445 (839)
Q Consensus 372 i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~g~i~~~ 445 (839)
|.+|++.. ..++.+++|. ...+..+.+.+...+++... ++.+..|
T Consensus 403 v~~~~~~s~~~~~~l~~h~-----------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 403 VYVWDSSSGGILQRLEGHS-----------------------------KAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred EEEEeCCccchhhhhcCCC-----------------------------CCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 99999964 4455555441 23467777887776666654 4545433
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=244.81 Aligned_cols=272 Identities=23% Similarity=0.372 Sum_probs=234.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeE-EeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
+...++|..|. ..++.++. +.+|++||..++..+.. +.+|.+ .|.++++. ..+ +.++.+
T Consensus 207 ~~~~~~~~q~~--------~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~-------~~~---~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLH--------DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFP-------SGG---DKLVSG 267 (537)
T ss_pred Ccchhhhheee--------cCeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEe-------cCC---CEEEEE
Confidence 35568888888 34777777 89999999999999888 888776 69999997 322 167777
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
+.|.++++||..+ +++.+.+.+|...|.++...+ .++++|+.|.+|++|++.++..+..+
T Consensus 268 S~D~t~rvWd~~s---------------g~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 268 STDKTERVWDCST---------------GECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred ecCCcEEeEecCC---------------CcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEe
Confidence 7899999999775 679999999999999998844 67888999999999999999999998
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
.++ ...+.++.. ++.++++|+.|+.|++|++. ..++++.+.
T Consensus 328 ~~h-~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~---------------------------------~~~cl~sl~ 368 (537)
T KOG0274|consen 328 RGH-TGPVNCVQL-----DEPLLVSGSYDGTVKVWDPR---------------------------------TGKCLKSLS 368 (537)
T ss_pred ccc-cccEEEEEe-----cCCEEEEEecCceEEEEEhh---------------------------------hceeeeeec
Confidence 874 445667665 47899999999999999999 899999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC-ccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~v 332 (839)
||.+.|.++.+.+. ..+++|+.|++|++||+++. ++ + .++.+|..-+..+.+.++++++++.|++|++
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c-----~-----~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC-----I-----HTLQGHTSLVSSLLLRDNFLVSSSADGTIKL 437 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh-----h-----hhhcCCcccccccccccceeEeccccccEEE
Confidence 99999999988765 89999999999999999997 55 2 3889999999999999999999999999999
Q ss_pred EcC-CCceEEEeec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 333 WGS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 333 w~~-~~~~~~~~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
||. +++++.++.+ |.+ .|+.+++. ...+++++.||.+++||++.
T Consensus 438 WD~~~~~~~~~~~~~~~~-~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 438 WDAEEGECLRTLEGRHVG-GVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred eecccCceeeeeccCCcc-cEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 999 8999999998 556 68888876 46789999999999999965
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.1e-24 Score=254.63 Aligned_cols=321 Identities=14% Similarity=0.189 Sum_probs=232.8
Q ss_pred CCeeEEEECCCCeeeeEEee----ecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCcc
Q 003208 43 GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPET 118 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~ 118 (839)
+|.+++|+..+.+....++. .+...|.+++|+ |+|+ .+++++.|+.|+||++.........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs-------~dg~---~latgg~D~~I~iwd~~~~~~~~~~----- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD-------RDGE---FFATAGVNKKIKIFECESIIKDGRD----- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC-------CCCC---EEEEEeCCCEEEEEECCcccccccc-----
Confidence 56788888876655444432 145579999999 8873 4555566999999997532100000
Q ss_pred ccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 119 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
...+...+.+ ...|.+++|+| ..+.+||+++.|++|++||+.+++.+..+..+.. .++++.+. +.++.+|++
T Consensus 522 --~~~~~~~~~~-~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~--p~~~~~L~S 593 (793)
T PLN00181 522 --IHYPVVELAS-RSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYS--SADPTLLAS 593 (793)
T ss_pred --cccceEEecc-cCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEc--CCCCCEEEE
Confidence 0112223333 46799999987 2478999999999999999999988888876654 46777773 246789999
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEc-CCCCEEEEEeCC
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSDD 277 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~d 277 (839)
|+.|+.|++||+. ....+..+..| ..|.++.|+ +++.+|++|+.|
T Consensus 594 gs~Dg~v~iWd~~---------------------------------~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 594 GSDDGSVKLWSIN---------------------------------QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EcCCCEEEEEECC---------------------------------CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 9999999999998 55666666654 689999995 578999999999
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcCC-------CceEEEeecccCC
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIGR 349 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~-------~~~~~~~~~h~~~ 349 (839)
+.|++||++..... . ..+.+|...|.++.|. +.++++++.|++|++||+. ..++..+.+|..
T Consensus 640 g~I~iwD~~~~~~~----~-----~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~- 709 (793)
T PLN00181 640 HKVYYYDLRNPKLP----L-----CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN- 709 (793)
T ss_pred CeEEEEECCCCCcc----c-----eEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-
Confidence 99999999875420 1 2667899999999997 7899999999999999983 256788889988
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCcC-ccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 428 (839)
.+..++|+|++.+|++|+.|+.|++|+..... +..+ ......... ......+...|.+++|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~----------------~~~~~~~~~-~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY----------------KFKTIDPVS-GLEVDDASQFISSVCWR 772 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE----------------ecccCCccc-ccccCCCCcEEEEEEEc
Confidence 69999999999999999999999999974321 1000 000000000 00112344679999999
Q ss_pred cCCe-EEEEeccceEEEEEe
Q 003208 429 SEDT-LYIATNHGYLYHTKL 447 (839)
Q Consensus 429 ~~~~-~~~~~~~g~i~~~~~ 447 (839)
+++. +++++.+|.|..|++
T Consensus 773 ~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 773 GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCeEEEecCCCcEEEEec
Confidence 9885 555567788876653
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-25 Score=213.41 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=221.2
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEE
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~ 209 (839)
-|.+||.++... +..+++|++||.+++||. .|+...++.++... +.++.++..++....+++++.|.++++|.
T Consensus 103 ~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~-ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGA-----SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP-IKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhccc-----CceEEEeecCCeeEEEec-CCceEEEEecCCcc-eeeeEEEecCCccceEEEecCCceEEEEE
Confidence 488999998874 478999999999999998 57777777776654 33444444455556899999999999999
Q ss_pred eeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
++.++. ..+.+....||+..|-+++..+++..+++||.|.+|+||+.....
T Consensus 176 ~~~~~~-----------------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~ 226 (423)
T KOG0313|consen 176 WNVGEN-----------------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE 226 (423)
T ss_pred ecCchh-----------------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc
Confidence 883221 122333345999999999999999999999999999999933221
Q ss_pred cC---C-C-----------CCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceE
Q 003208 290 WK---D-S-----------DSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (839)
Q Consensus 290 ~~---~-~-----------~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~ 352 (839)
.. . + ..........+.||..+|.++.|+ ...+++++.|.+|+.||+ .+..+.++.+.. .+.
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~ 304 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLN 304 (423)
T ss_pred cccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc--cee
Confidence 10 0 0 000011125788999999999999 689999999999999999 788887776654 599
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-
Q 003208 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED- 431 (839)
Q Consensus 353 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 431 (839)
++.++|...+|++|+.|..+++||.+.. ...-....+.+|..+|.++.++|.+
T Consensus 305 ~i~~~~~~~Ll~~gssdr~irl~DPR~~--------------------------~gs~v~~s~~gH~nwVssvkwsp~~~ 358 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSDRHIRLWDPRTG--------------------------DGSVVSQSLIGHKNWVSSVKWSPTNE 358 (423)
T ss_pred EeecccccceeeecCCCCceeecCCCCC--------------------------CCceeEEeeecchhhhhheecCCCCc
Confidence 9999999999999999999999999652 1111122344677899999999966
Q ss_pred -eEEEEeccceEEEEEecCCCCceeEEEeeec-CCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEE
Q 003208 432 -TLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (839)
Q Consensus 432 -~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~ 501 (839)
.++.++.++.+.+|++..... +++..+ +...+.+++... +..+++|+.|.+|+++.-
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k~----plydI~~h~DKvl~vdW~~---------~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTKA----PLYDIAGHNDKVLSVDWNE---------GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eEEEEEecCCeEEEEEeccCCC----cceeeccCCceEEEEeccC---------CceEEeccCcceEEEecc
Confidence 566677899998888876653 333332 255677776644 369999999999999854
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=8.6e-25 Score=226.03 Aligned_cols=282 Identities=20% Similarity=0.357 Sum_probs=224.5
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeE
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i 205 (839)
..+++|.++|++++|+| ++++|++++.|+.|++|++.+++....+..+... +..+.+ .+++..+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~---~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAA---SADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc-eeEEEE---CCCCCEEEEEcCCCeE
Confidence 45679999999999999 9999999999999999999988777766655443 334444 4677899999999999
Q ss_pred EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 003208 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~ 285 (839)
++|++. ..+....+..|...|.++.|+|+++.+++++.|+.|++||+
T Consensus 76 ~i~~~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 76 RLWDLE---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEcC---------------------------------cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998 55667777889999999999999888888888999999999
Q ss_pred ccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCE
Q 003208 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (839)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~ 362 (839)
.+.+. . ..+..|...+.++.|++ .++++++.|+.+++||+ .++.+..+..|.. .+.+++|+|+++.
T Consensus 123 ~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 191 (289)
T cd00200 123 ETGKC-----L-----TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK 191 (289)
T ss_pred CCcEE-----E-----EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE
Confidence 86543 1 25557888999999994 67777777999999999 6788888888877 6999999999999
Q ss_pred EEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEec-cc
Q 003208 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HG 440 (839)
Q Consensus 363 l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~g 440 (839)
+++++.|+.|++||++. .....+. .+...+.++++++++.+++++. +|
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~~~------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGTLR------------------------------GHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEEecCCCcEEEEECCCCceecchh------------------------------hcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999964 2222211 2234689999999888887776 89
Q ss_pred eEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
.+..|++..... ...+. .+...+.++.+.++. ..+++++.||.+++|+
T Consensus 242 ~i~i~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~--------~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGEC---VQTLS-GHTNSVTSLAWSPDG--------KRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCcee---EEEcc-ccCCcEEEEEECCCC--------CEEEEecCCCeEEecC
Confidence 998877654322 12222 234567888876653 7999999999999995
No 66
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=234.26 Aligned_cols=272 Identities=17% Similarity=0.274 Sum_probs=217.4
Q ss_pred CcceEEEee-CCeeEEEECCCCe------eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeec
Q 003208 34 SLPFLLAGS-GSQVLLYDLEAGT------LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (839)
Q Consensus 34 ~~~~l~~g~-~~~v~iwd~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~ 106 (839)
+++||++|+ ||.|++|+..... .+.+++.|.. .|..|+.. .+++ .++.++.|-+|++|+...
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~-------~~~~---tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILC-------GNGK---TLISASSDTTVKVWNAHK 104 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhh-------cCCC---ceEEecCCceEEEeeccc
Confidence 377888877 9999999975422 3566776544 79998887 6664 889999999999999875
Q ss_pred cCCCCCCCCCccccceeeeEeccCCCcceEEEEE-eeccCCCcEEEEEeCCCcEEEEecCCCc--eEEEE--------ec
Q 003208 107 ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF-LKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEV--------HS 175 (839)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~-~~~~~~~~~las~~~d~~i~vwd~~~~~--~~~~~--------~~ 175 (839)
.. --+..++..|.+.|.|+++ .+ +..++|+||.|+.|.+||+.++. .+.+. ..
T Consensus 105 ~~-------------~~c~stir~H~DYVkcla~~ak---~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 105 DN-------------TFCMSTIRTHKDYVKCLAYIAK---NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred Cc-------------chhHhhhhcccchheeeeeccc---CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 42 2466788999999999999 56 88899999999999999999773 22222 22
Q ss_pred CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
..+..+|+++. ++.+..|++|+..+.|++||++ +.+.+..++||
T Consensus 169 G~k~siYSLA~---N~t~t~ivsGgtek~lr~wDpr---------------------------------t~~kimkLrGH 212 (735)
T KOG0308|consen 169 GPKDSIYSLAM---NQTGTIIVSGGTEKDLRLWDPR---------------------------------TCKKIMKLRGH 212 (735)
T ss_pred CCccceeeeec---CCcceEEEecCcccceEEeccc---------------------------------cccceeeeecc
Confidence 33455788776 6778899999999999999999 78888899999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEE
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVW 333 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw 333 (839)
+..|..+..++||+.++++|.||+|++||+....+. .++..|...||++..++ ..+++|+.||.|..=
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl----------~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL----------ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeecccccee----------eeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 999999999999999999999999999999987762 47889999999999885 689999999999999
Q ss_pred cCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 334 ~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
|+......++......+|..+..+...+-+-+++.|+.|+-|...
T Consensus 283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 983322222222222368788877555555788899999999874
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=227.71 Aligned_cols=292 Identities=15% Similarity=0.208 Sum_probs=218.9
Q ss_pred cceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccC-ccCCCCCceeeeceEeeccccceEEeEEC--CCE
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~ 320 (839)
..+.++.+.||+..|.++.|.| .+.+|++++.|+.|+||++... .+ + .++.+|..+|.+++|+ +..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-----l-----rtf~gH~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-----L-----RTFKGHRKPVRDASFNNCGTS 272 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-----e-----hhhhcchhhhhhhhccccCCe
Confidence 3567788999999999999999 8899999999999999999883 33 3 3899999999999999 789
Q ss_pred EEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCC
Q 003208 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGR 397 (839)
Q Consensus 321 l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~ 397 (839)
++|++.|+.+++||. +|+++..+... ..+.++.|+|++ +.+++|+.|+.|+.||++. ..++++..
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---------- 340 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---------- 340 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------
Confidence 999999999999999 89999888544 358999999998 8999999999999999965 33333332
Q ss_pred cceEEeecCCCccceeeccCCCcceEEEEEecCCeEEE-EeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCC
Q 003208 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (839)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 476 (839)
|-+.|..+.|.+++..++ ++.++.+.+|........+ ..........-|+.++|.
T Consensus 341 --------------------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik---~i~~~~~hsmP~~~~~P~- 396 (503)
T KOG0282|consen 341 --------------------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK---NIADPEMHTMPCLTLHPN- 396 (503)
T ss_pred --------------------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch---hhcchhhccCcceecCCC-
Confidence 335689999999885554 5556667665543332221 111222334445666554
Q ss_pred CCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCC
Q 003208 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (839)
Q Consensus 477 ~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~ 556 (839)
+++++.=+.|..|.+|.+...-...+.. .++ ++.-.-.+..+.|||||++|++|+.||.+.+||..+.+
T Consensus 397 -------~~~~~aQs~dN~i~ifs~~~~~r~nkkK-~fe---Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 397 -------GKWFAAQSMDNYIAIFSTVPPFRLNKKK-RFE---GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred -------CCeehhhccCceEEEEecccccccCHhh-hhc---ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 4899999999999999875421111111 111 11111223446799999999999999999999998765
Q ss_pred CcccccCCccceeeeeeccccccCceEEEEeeecC-CCEEEEecCCccEEEEe
Q 003208 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFP 608 (839)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~la~gs~dg~i~iw~ 608 (839)
. ... ..+|...++.++|.|. ...+|+++.||.|++|+
T Consensus 466 l--------------~~~-lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 L--------------VSK-LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred h--------------hhc-cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 2 111 2368999999999986 45899999999999996
No 68
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2e-26 Score=225.92 Aligned_cols=287 Identities=15% Similarity=0.184 Sum_probs=224.3
Q ss_pred eeeeEEeeecCceEEeEEecccccccCC-CccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC
Q 003208 55 TLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS 132 (839)
Q Consensus 55 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 132 (839)
+.+.++.+|.. .|.++.|. | .+ .+|+.++ |+.|+||++-.. ..+++++.+|.
T Consensus 205 k~~~~~~gH~k-gvsai~~f-------p~~~----hLlLS~gmD~~vklW~vy~~--------------~~~lrtf~gH~ 258 (503)
T KOG0282|consen 205 KLSHNLSGHTK-GVSAIQWF-------PKKG----HLLLSGGMDGLVKLWNVYDD--------------RRCLRTFKGHR 258 (503)
T ss_pred hheeeccCCcc-ccchhhhc-------ccee----eEEEecCCCceEEEEEEecC--------------cceehhhhcch
Confidence 34566676665 59999999 5 33 5666555 999999999752 57899999999
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccc-eEEEEeecCCeEEEEEee
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~ 211 (839)
.+|.+++|++ ++..+.|++.|+.|++||+++|+++.+++.. +..+++.++ |++ +.+++|+.|+.|+.||++
T Consensus 259 k~Vrd~~~s~---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--~~~~cvkf~---pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 259 KPVRDASFNN---CGTSFLSASFDRFLKLWDTETGQVLSRFHLD--KVPTCVKFH---PDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred hhhhhhhccc---cCCeeeeeecceeeeeeccccceEEEEEecC--CCceeeecC---CCCCcEEEEecCCCcEEEEecc
Confidence 9999999999 9999999999999999999999999888654 346667774 444 889999999999999999
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 291 (839)
.++.++....|-+.|..+.|-++++++++.++|++++||+.+..-.
T Consensus 331 ---------------------------------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~- 376 (503)
T KOG0282|consen 331 ---------------------------------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP- 376 (503)
T ss_pred ---------------------------------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-
Confidence 7778888889999999999999999999999999999999987654
Q ss_pred CCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcCC----CceEEEeecccCCc-eEEEEEccCCCEEEEE
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGRG-IWRCLYDSLSSLLVTA 366 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~----~~~~~~~~~h~~~~-i~~~~~~~~~~~l~t~ 366 (839)
++.+ .....|+.+...+.-.+++++.-+.|+.+.++.+. ....+.+.+|...+ -..+.|+|||.+|++|
T Consensus 377 ----ik~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 377 ----IKNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred ----chhh--cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 3322 13334554443343347899999999999999872 23345667776422 3457899999999999
Q ss_pred eCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC--eEEEEeccceEE
Q 003208 367 GFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLY 443 (839)
Q Consensus 367 ~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~i~ 443 (839)
..||.+.+||.+. +.+..+. .|++.+..+.|.|.. .++.++-+|.|.
T Consensus 451 dsdG~v~~wdwkt~kl~~~lk------------------------------ah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKLVSKLK------------------------------AHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred cCCccEEEeechhhhhhhccc------------------------------cCCcceEEEEecCCCcceeEecccCceeE
Confidence 9999999999965 3333333 344678899999854 556666678775
Q ss_pred EE
Q 003208 444 HT 445 (839)
Q Consensus 444 ~~ 445 (839)
.|
T Consensus 501 iw 502 (503)
T KOG0282|consen 501 IW 502 (503)
T ss_pred ec
Confidence 43
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=235.70 Aligned_cols=319 Identities=18% Similarity=0.253 Sum_probs=204.7
Q ss_pred eeeeEecc-CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 122 LSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 122 ~~~~~~~~-~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
....+.+. .|.+.|+++.|++ +|+|||+||.|+.|+||.+...+....-.....++.+.+. ..+..-.+-.
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-----~~s~~~p~~s 327 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-----ANSQIEPSTS 327 (712)
T ss_pred eEEeeccccccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-----hccccCcccc
Confidence 34456666 8999999999999 9999999999999999999765442211111111111110 0000000000
Q ss_pred cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003208 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (839)
Q Consensus 201 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i 280 (839)
..+.+. .....+..+.......+.........++++.+.||.+.|..|.|+.+ .+|+++|.|++|
T Consensus 328 ~~~~~~--------------~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTV 392 (712)
T KOG0283|consen 328 SEEKIS--------------SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTV 392 (712)
T ss_pred cccccc--------------ccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccE
Confidence 000000 00000000001111111111111246788899999999999999976 589999999999
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEc
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~ 357 (839)
|+|++....+ ...+.|...|+|++|+ +++|++|+.||.||||++....+.....-.. -|++++|.
T Consensus 393 RLWh~~~~~C-----------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~ 460 (712)
T KOG0283|consen 393 RLWHPGRKEC-----------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYS 460 (712)
T ss_pred EeecCCCcce-----------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEec
Confidence 9999998877 3788999999999999 5899999999999999995544444443344 69999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe
Q 003208 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 437 (839)
|||+..+.|+.+|.+++|+..+..+ +....+
T Consensus 461 PdGk~avIGt~~G~C~fY~t~~lk~---------------------------------------~~~~~I---------- 491 (712)
T KOG0283|consen 461 PDGKGAVIGTFNGYCRFYDTEGLKL---------------------------------------VSDFHI---------- 491 (712)
T ss_pred cCCceEEEEEeccEEEEEEccCCeE---------------------------------------EEeeeE----------
Confidence 9999999999999999999855211 111000
Q ss_pred ccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEee
Q 003208 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~ 517 (839)
.+.+.+. .. ...|+.+.+.+.. ...+++.+.|..|+|||.....+..+++ ..
T Consensus 492 --------~~~~~Kk--------~~-~~rITG~Q~~p~~-------~~~vLVTSnDSrIRI~d~~~~~lv~KfK----G~ 543 (712)
T KOG0283|consen 492 --------RLHNKKK--------KQ-GKRITGLQFFPGD-------PDEVLVTSNDSRIRIYDGRDKDLVHKFK----GF 543 (712)
T ss_pred --------eeccCcc--------cc-CceeeeeEecCCC-------CCeEEEecCCCceEEEeccchhhhhhhc----cc
Confidence 0111110 00 1145555555542 2356667779999999986554443322 22
Q ss_pred ccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCC
Q 003208 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (839)
Q Consensus 518 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~ 555 (839)
.....++. ..|+.||+++++++.|..|++|+.+..
T Consensus 544 ~n~~SQ~~---Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 544 RNTSSQIS---ASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCCccee---eeEccCCCEEEEeecCceEEEEeCCCC
Confidence 22222232 346779999999999999999998754
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=218.29 Aligned_cols=289 Identities=17% Similarity=0.255 Sum_probs=227.8
Q ss_pred ccccccCCCc----eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccC
Q 003208 6 LSEWRLDVGQ----YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEG 81 (839)
Q Consensus 6 i~~w~~~~~~----~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 81 (839)
.+-|+-.+.. ...+|++|+|+ |. ....++ +.+.-.+.||+..+...+.++..|+. .|.++.|.
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fs--p~--~P~d~a-Vt~S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR------- 77 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFS--PK--HPYDFA-VTSSVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFR------- 77 (487)
T ss_pred chhhhhhcccccccccCcceeEecC--CC--CCCceE-EecccEEEEEecchhhhhhhHHhhcc-ceeEEEee-------
Confidence 3456655433 45789999999 86 222233 34456799999998888888887877 49999999
Q ss_pred CCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEE
Q 003208 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (839)
Q Consensus 82 ~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~ 160 (839)
.|| .++++++ .|.|+|+|+.+ -..+..+.+|+.+|..+.|+| .++..+++|++|+.++
T Consensus 78 ~DG----~LlaaGD~sG~V~vfD~k~---------------r~iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 78 SDG----RLLAAGDESGHVKVFDMKS---------------RVILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVK 136 (487)
T ss_pred cCC----eEEEccCCcCcEEEecccc---------------HHHHHHHhhccCceeEEEecc--cCCeEEEecCCCceEE
Confidence 898 7777776 59999999654 235677889999999999999 3667889999999999
Q ss_pred EEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEee
Q 003208 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (839)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (839)
+||+.+......+.++.. .+-+.++. +.++..+++|+.||.|++||.+
T Consensus 137 ~~d~s~a~v~~~l~~htD-YVR~g~~~--~~~~hivvtGsYDg~vrl~DtR----------------------------- 184 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTD-YVRCGDIS--PANDHIVVTGSYDGKVRLWDTR----------------------------- 184 (487)
T ss_pred EEEcCCcEEEEEecCCcc-eeEeeccc--cCCCeEEEecCCCceEEEEEec-----------------------------
Confidence 999999887556665543 34444442 4567799999999999999998
Q ss_pred cccccc-eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--
Q 003208 241 DQQHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (839)
Q Consensus 241 ~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 317 (839)
.. ..+..+ .|..+|-.+.+-|.|..|++++. ..|++||+.++.+. + .....|...|+|+.+.
T Consensus 185 ----~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~ql----l-----~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 185 ----SLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQL----L-----TSMFNHNKTVTCLRLASD 249 (487)
T ss_pred ----cCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCcee----h-----hhhhcccceEEEEEeecC
Confidence 33 445555 48999999999999999999987 57999999966541 1 2444599999999998
Q ss_pred CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+..|++++.|+.+++||+ +-+.+..+.... +|.+++++|+++.++.|..||.+.+-+.
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~--pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVVHSWKYPG--PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CceEeecccccceEEEEccceEEEEeeeccc--ceeeEEecCCCceEEEecccceeeeehh
Confidence 589999999999999998 667777776544 6999999999999999999998877643
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=3.3e-25 Score=200.82 Aligned_cols=244 Identities=16% Similarity=0.197 Sum_probs=169.9
Q ss_pred eEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 302 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
..+.||+.+++.+.|+ +.+|++++.|.+..||-. +|+.+.++.+|.+ .||+++.+.+.+.++||+.|.++++||.+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcC
Confidence 4788999999999998 899999999999999998 9999999999999 69999999999999999999999999995
Q ss_pred C-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEE
Q 003208 379 A-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (839)
Q Consensus 379 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 457 (839)
. +++ +....+ .+|+.+.|+.+|.+++.+.+...-
T Consensus 83 tGk~l------------------a~~k~~-------------~~Vk~~~F~~~gn~~l~~tD~~mg-------------- 117 (327)
T KOG0643|consen 83 TGKQL------------------ATWKTN-------------SPVKRVDFSFGGNLILASTDKQMG-------------- 117 (327)
T ss_pred CCcEE------------------EEeecC-------------CeeEEEeeccCCcEEEEEehhhcC--------------
Confidence 4 322 222212 358999999988777665443220
Q ss_pred EeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeE
Q 003208 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537 (839)
Q Consensus 458 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 537 (839)
..+.|.++++.........+..+.....++..+.. +.++|-+++
T Consensus 118 ----------------------------------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~--a~Wg~l~~~ 161 (327)
T KOG0643|consen 118 ----------------------------------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS--ALWGPLGET 161 (327)
T ss_pred ----------------------------------cceEEEEEEccCChhhhcccCceEEecCCccceee--eeecccCCE
Confidence 01122222222110000000000000112222333 346788999
Q ss_pred EEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCC
Q 003208 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK 617 (839)
Q Consensus 538 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~ 617 (839)
+++|..||.|..||+.++.+ ++.. ..-|...|+.|.+|+|..++++||.|.+-++||+..
T Consensus 162 ii~Ghe~G~is~~da~~g~~-------------~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t------ 221 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKE-------------LVDS-DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT------ 221 (327)
T ss_pred EEEecCCCcEEEEEcccCce-------------eeec-hhhhccccccccccCCcceEEecccCccceeeeccc------
Confidence 99999999999999998753 1111 235888999999999999999999999999999984
Q ss_pred CccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecC
Q 003208 618 SVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGG 660 (839)
Q Consensus 618 ~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~ 660 (839)
++.+..+..- .+|++.+++ |....++.+|.
T Consensus 222 -------l~v~Kty~te---~PvN~aais---P~~d~VilgGG 251 (327)
T KOG0643|consen 222 -------LEVLKTYTTE---RPVNTAAIS---PLLDHVILGGG 251 (327)
T ss_pred -------eeeEEEeeec---ccccceecc---cccceEEecCC
Confidence 2233333211 368888888 44444444443
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.9e-25 Score=197.28 Aligned_cols=222 Identities=21% Similarity=0.358 Sum_probs=181.2
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC-CceEEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~-~~~~~~~ 173 (839)
|.|++.|.++..+. .......+. -.+.+.+++|++ ...+.+++++.||++++||+.. ..++..+
T Consensus 36 G~G~L~ile~~~~~------------gi~e~~s~d-~~D~LfdV~Wse--~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~ 100 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK------------GIQECQSYD-TEDGLFDVAWSE--NHENQVIAASGDGSLRLFDLTMPSKPIHKF 100 (311)
T ss_pred cCceEEEEecCCCC------------CeEEEEeee-cccceeEeeecC--CCcceEEEEecCceEEEeccCCCCcchhHH
Confidence 57899999986322 134444443 457899999998 2456788899999999999753 3455555
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
+.|.+ .++++.+ ...++..+++++.|++|++|+.. .++.+.++.
T Consensus 101 kEH~~-EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~---------------------------------r~~Sv~Tf~ 144 (311)
T KOG0277|consen 101 KEHKR-EVYSVDW--NTVRRRIFLTSSWDGTIKLWDPN---------------------------------RPNSVQTFN 144 (311)
T ss_pred Hhhhh-heEEecc--ccccceeEEeeccCCceEeecCC---------------------------------CCcceEeec
Confidence 55544 5778776 34456778888999999999998 677888999
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCe
Q 003208 254 GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (839)
Q Consensus 254 ~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~ 329 (839)
||...|...+|+| ..+.++++|.|+++++||++.... . ..+..|...|.++.|+ ++.++||+.|+.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-----~-----~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-----F-----MSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-----e-----eEEEeccceeEeecccccCCcEEEecCCCce
Confidence 9999999999999 568999999999999999987644 1 3677899999999998 689999999999
Q ss_pred EEEEcC--CCceEEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecC
Q 003208 330 CRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 330 i~vw~~--~~~~~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~ 378 (839)
|++||+ -..++..+.+|.- .|..+.|+|.. .+|++++.|-++++||..
T Consensus 215 vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred EEEEehhhccccceeecCCce-EEEEEecCcchhhHhhhccccceEEecccc
Confidence 999999 3567888999988 69999999975 589999999999999984
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=232.47 Aligned_cols=273 Identities=22% Similarity=0.326 Sum_probs=224.2
Q ss_pred CceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEe-ccCCCcceEEEEEeec
Q 003208 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVCFLKV 143 (839)
Q Consensus 65 ~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~~~~~~~ 143 (839)
...+.+..+. .+ .+++.+.+++|++|+... ...+.. +.||.+.|.++++..
T Consensus 208 ~~~~~~~q~~-------~~-----~~~~~s~~~tl~~~~~~~---------------~~~i~~~l~GH~g~V~~l~~~~- 259 (537)
T KOG0274|consen 208 DHVVLCLQLH-------DG-----FFKSGSDDSTLHLWDLNN---------------GYLILTRLVGHFGGVWGLAFPS- 259 (537)
T ss_pred cchhhhheee-------cC-----eEEecCCCceeEEeeccc---------------ceEEEeeccCCCCCceeEEEec-
Confidence 3346666665 33 677777899999999876 344555 999999999999976
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
.+++|++|+.|.+++|||..++++...+.++... +.++. ....++++|+.|.+|++|++.
T Consensus 260 --~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-v~~~~-----~~~~~~~sgs~D~tVkVW~v~------------ 319 (537)
T KOG0274|consen 260 --GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-VRCLT-----IDPFLLVSGSRDNTVKVWDVT------------ 319 (537)
T ss_pred --CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-EEEEE-----ccCceEeeccCCceEEEEecc------------
Confidence 6899999999999999999999999999877643 44443 456788899999999999998
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceE
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (839)
.+..+..+.+|.++|.++..+ +..+++|+.|++|++||+.+.++ + ..
T Consensus 320 ---------------------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c-----l-----~s 366 (537)
T KOG0274|consen 320 ---------------------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC-----L-----KS 366 (537)
T ss_pred ---------------------CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee-----e-----ee
Confidence 788899999999999999997 78999999999999999998766 3 38
Q ss_pred eeccccceEEeEECC-CEEEEEeCCCeEEEEcC-CC-ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC-C
Q 003208 304 LYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-A 379 (839)
Q Consensus 304 ~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vw~~-~~-~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~-~ 379 (839)
+.+|..+|.++.+.+ +.+++|+.|++|++||+ +. +++..+.+|.. -+..+.+ .+++|++++.|++|++||.. +
T Consensus 367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccC
Confidence 899999999999998 99999999999999999 55 69999999987 4655444 56899999999999999984 3
Q ss_pred cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCC
Q 003208 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (839)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 451 (839)
.+++++++. +...|.++++. +..+++++.+|.+..+++.+..
T Consensus 444 ~~~~~~~~~-----------------------------~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 444 ECLRTLEGR-----------------------------HVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ceeeeeccC-----------------------------CcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 555544431 12347777766 4588899999999888776543
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=6.4e-25 Score=198.92 Aligned_cols=279 Identities=15% Similarity=0.186 Sum_probs=220.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.+|+|-|.|+ .+ |.+|.++. |....||-..+|+.+.++.+|.+ .|.++.+. -+.+ .+++.+
T Consensus 9 HERplTqiKyN--~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did-------~~s~---~liTGS 71 (327)
T KOG0643|consen 9 HERPLTQIKYN--RE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDID-------WDSK---HLITGS 71 (327)
T ss_pred CccccceEEec--CC----CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEec-------CCcc---eeeecc
Confidence 88999999999 77 88998888 99999999989999999999877 69999988 4542 777788
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-----CCcEEEEecC----
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDIS---- 165 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-----d~~i~vwd~~---- 165 (839)
+|.++++||.++ ++.+..++ ...+|..+.|++ ++++++.... .+.|.++|++
T Consensus 72 AD~t~kLWDv~t---------------Gk~la~~k-~~~~Vk~~~F~~---~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ADQTAKLWDVET---------------GKQLATWK-TNSPVKRVDFSF---GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ccceeEEEEcCC---------------CcEEEEee-cCCeeEEEeecc---CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 899999999997 45666655 456899999999 9988776543 4679999997
Q ss_pred ---CCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 166 ---NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
..++...+..+... +.++.+ ++-+..|++|..||.|..||++
T Consensus 133 ~~~s~ep~~kI~t~~sk-it~a~W---g~l~~~ii~Ghe~G~is~~da~------------------------------- 177 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSK-ITSALW---GPLGETIIAGHEDGSISIYDAR------------------------------- 177 (327)
T ss_pred hhcccCceEEecCCccc-eeeeee---cccCCEEEEecCCCcEEEEEcc-------------------------------
Confidence 34456667666533 333333 6789999999999999999998
Q ss_pred cccc-eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--C
Q 003208 243 QHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (839)
Q Consensus 243 ~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~ 319 (839)
++ +.+..-+.|...|+.|.++||..+++++|.|.+-++||+.+-.. + ..+....+|.+.+++| +
T Consensus 178 --~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v--------~---Kty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 178 --TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV--------L---KTYTTERPVNTAAISPLLD 244 (327)
T ss_pred --cCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee--------E---EEeeecccccceecccccc
Confidence 43 44555577999999999999999999999999999999998654 1 3445567899999884 3
Q ss_pred EE-EEEeCCCe-------------EEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 320 FI-ITAGEDCT-------------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 320 ~l-~s~~~dg~-------------i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+ +.|+.+.. .+.|++ -.+.+..+++|-+ ||.+++|+|+|+..++||.||.|++.-.+.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 44 44444321 122222 2346778899999 899999999999999999999999987643
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-23 Score=194.16 Aligned_cols=279 Identities=14% Similarity=0.185 Sum_probs=218.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
..+.|++|.|+ ++ |.++++++ |..|+|||..+|+.+.++..++- .|..+.|.. ++. .++..+
T Consensus 13 ~~~~i~sl~fs--~~----G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Fth------~~~----~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFS--DD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFTH------HSN----TVIHSS 75 (311)
T ss_pred CCCceeEEEec--CC----CCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEec------CCc----eEEEcc
Confidence 45679999999 88 66777755 78999999999999999997664 488888872 222 556655
Q ss_pred c--CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 95 ~--~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
. |.+||..++.+ .+.++.+.||.+.|++++.+| -++.+++++.|++|++||++..++...
T Consensus 76 tk~d~tIryLsl~d---------------NkylRYF~GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHD---------------NKYLRYFPGHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred CCCCCceEEEEeec---------------CceEEEcCCCCceEEEEEecC---CCCeEEecccCCeEEeeEecCCCCceE
Confidence 4 78999999986 678999999999999999999 779999999999999999998887776
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
+....+.+ ++ ++|+|.++|++.....|++||++.-... +...+
T Consensus 138 l~~~~~pi---~A---fDp~GLifA~~~~~~~IkLyD~Rs~dkg-------------------------------PF~tf 180 (311)
T KOG1446|consen 138 LNLSGRPI---AA---FDPEGLIFALANGSELIKLYDLRSFDKG-------------------------------PFTTF 180 (311)
T ss_pred EecCCCcc---ee---ECCCCcEEEEecCCCeEEEEEecccCCC-------------------------------CceeE
Confidence 66544432 12 2699999999988889999999822211 22222
Q ss_pred e---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc---eEEeEEC--CCEEEEE
Q 003208 253 V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---VWDCCLT--DSFIITA 324 (839)
Q Consensus 253 ~---~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~--~~~l~s~ 324 (839)
. +-......|.|+|||+.|+.+...+.+.+.|.-.+.. .. .+.++... -....|+ ++++++|
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-----~~-----tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-----KS-----TFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-----ee-----eEeeccCCCCcceeEEECCCCcEEEEe
Confidence 1 4467889999999999999999999999999988765 22 33333222 1456676 5899999
Q ss_pred eCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 325 ~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+.||+|.+|++ ++..+..+++....++.++.|+|.-.+++++ +..+.+|-..
T Consensus 251 s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 99999999999 8999999998543379999999976555554 5678888764
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.2e-24 Score=199.08 Aligned_cols=269 Identities=20% Similarity=0.235 Sum_probs=210.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC-CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
....|.+|+|| |. ...++++|+ |++||+|+++. |..+.+....+..+|.+++|+ .||. ..++.
T Consensus 26 P~DsIS~l~FS--P~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-------ddgs---kVf~g 90 (347)
T KOG0647|consen 26 PEDSISALAFS--PQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-------DDGS---KVFSG 90 (347)
T ss_pred cccchheeEec--cc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-------cCCc---eEEee
Confidence 45679999999 84 367777888 99999999987 676666665666799999999 8884 67777
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCc--EEEEEeCCCcEEEEecCCCceEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR--SLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~--~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+.|+.+++||+...+ +..+..|.++|.++.|-+ ... .|+||+.|.+|+.||.+...++.
T Consensus 91 ~~Dk~~k~wDL~S~Q----------------~~~v~~Hd~pvkt~~wv~---~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQ----------------VSQVAAHDAPVKTCHWVP---GMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred ccCCceEEEEccCCC----------------eeeeeecccceeEEEEec---CCCcceeEecccccceeecccCCCCeee
Confidence 779999999998643 455668999999999988 554 89999999999999999999999
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (839)
++.-++++ |++.. ....+++++.+..|.+|+++++ ......
T Consensus 152 t~~LPeRv--Ya~Dv-----~~pm~vVata~r~i~vynL~n~--------------------------------~te~k~ 192 (347)
T KOG0647|consen 152 TLQLPERV--YAADV-----LYPMAVVATAERHIAVYNLENP--------------------------------PTEFKR 192 (347)
T ss_pred eeecccee--eehhc-----cCceeEEEecCCcEEEEEcCCC--------------------------------cchhhh
Confidence 99999885 44432 3457888999999999999721 111111
Q ss_pred E-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc---------cceEEeEECC--C
Q 003208 252 L-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--S 319 (839)
Q Consensus 252 ~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~--~ 319 (839)
. ..-+-.+.||+..++....+.|+-.|.+-+..++....... +.++.|. ..|.+++|++ +
T Consensus 193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--------FtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 193 IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--------FTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--------eeEEEeccCCCCCCceEEecceEeecccc
Confidence 1 11335688999999888889999999999999987533211 3444443 2477889995 7
Q ss_pred EEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEE
Q 003208 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~ 366 (839)
.|+|+|.||++..||. ....+.....|.. +|++.+|+.+|.+++-+
T Consensus 265 tlvTaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEEecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEE
Confidence 8999999999999999 5556777778888 89999999999876544
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=8.3e-26 Score=217.03 Aligned_cols=279 Identities=18% Similarity=0.273 Sum_probs=225.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe--eeeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
|.+.|..+.|- ++ ...|++|. |..|++|+...++ .+.++.+..+ +|+.+.|. ++++ ..|+
T Consensus 174 h~gev~~v~~l--~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~d-------~~~~---~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFL--RN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDFD-------SDNK---HVIA 236 (459)
T ss_pred cccccceeEEc--cC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCC-Ccceeeec-------CCCc---eEEe
Confidence 77889999998 76 45666655 9999999987655 6667776444 69999999 7774 7888
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
.+.|+.+++|++.. .+..++|.||++.|+++.|.- ....+++|+.|.+|++||+....+.++
T Consensus 237 as~d~~~r~Wnvd~---------------~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------LRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ecCCCceeeeeccc---------------hhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheecc
Confidence 88899999999985 678899999999999999987 555699999999999999999888887
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
+.....|.-..+ ....+++|-.|+.|++||.+ ...+....
T Consensus 299 ~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~R---------------------------------s~~~~~sv 338 (459)
T KOG0288|consen 299 VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIR---------------------------------SADKTRSV 338 (459)
T ss_pred ccccccccceEe-------cceeeeecccccceEEEecc---------------------------------CCceeeEe
Confidence 765443322221 25578889999999999998 66677777
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeE
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 330 (839)
..+ +.|+++..++++..+.+++.|.++.+.|+++... ...... .-.......+.+.|+ +.|+++|+.||.|
T Consensus 339 ~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 339 PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSADGSV 411 (459)
T ss_pred ecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEeec-cccccccccceeEECCCCceeeeccCCCcE
Confidence 766 4999999999999999999999999999998765 222221 112223347788898 5899999999999
Q ss_pred EEEcC-CCceEEEeecccCC-ceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 331 RVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 331 ~vw~~-~~~~~~~~~~h~~~-~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
+||++ .+++...+...... .|++++|+|.|..+++++.++.+.+|.
T Consensus 412 ~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999 78888877765542 599999999999999999999999993
No 78
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=210.47 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=221.5
Q ss_pred eeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEe
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~ 325 (839)
..+..+.||.+.|.+++=+|.. ..+++|+.||.|++||+....+ . ..+..|.+.|..+++..+.++++|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----~-----~~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----I-----RTFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----h-----heeecccCceeeEEecccceEEec
Confidence 3456788999999999999976 7899999999999999998765 2 488899999999999989999999
Q ss_pred CCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeec
Q 003208 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (839)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (839)
.|.+|+.|.+++.++.++.+... +..+.-+..+..++|+|.+ |.|||.+..
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s~--~~gIdh~~~~~~FaTcGe~--i~IWD~~R~------------------------- 177 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKSV--YLGIDHHRKNSVFATCGEQ--IDIWDEQRD------------------------- 177 (433)
T ss_pred CCcceeeeeccCCcceeeecccc--ccccccccccccccccCce--eeecccccC-------------------------
Confidence 99999999998888888876553 7778877777889999875 899998431
Q ss_pred CCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCc
Q 003208 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (839)
Q Consensus 406 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 485 (839)
.+++.+.+--|. + .++.+.+ ....
T Consensus 178 --------------~Pv~smswG~Dt-i----------------------------------~svkfNp-------vETs 201 (433)
T KOG0268|consen 178 --------------NPVSSMSWGADS-I----------------------------------SSVKFNP-------VETS 201 (433)
T ss_pred --------------CccceeecCCCc-e----------------------------------eEEecCC-------Ccch
Confidence 234444443221 1 1111111 1225
Q ss_pred EEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCc
Q 003208 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (839)
Q Consensus 486 ~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 565 (839)
+|+++.+|+.|.|||+.......+..+... .. -.|++|.+-.+++|++|..++.||+.....
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~mR-----TN-----~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------- 263 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTMR-----TN-----TICWNPEAFNFVAANEDHNLYTYDMRNLSR-------- 263 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeecc-----cc-----ceecCccccceeeccccccceehhhhhhcc--------
Confidence 788898999999999988765554443321 11 157889666688899999999999987542
Q ss_pred cceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEE
Q 003208 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (839)
Q Consensus 566 ~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~ 645 (839)
|-..-.+|.+.|..++|||.|+-+++||.|.+|+||.+.... .+.+ .. ......|.+|.|
T Consensus 264 ------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~--------SRdi--Yh----tkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 264 ------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH--------SRDI--YH----TKRMQHVFCVKY 323 (433)
T ss_pred ------cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc--------chhh--hh----HhhhheeeEEEE
Confidence 112234799999999999999999999999999999998632 1111 00 011246999999
Q ss_pred EeccCCceEEEeecCcCcEEEEEEecCC
Q 003208 646 AKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (839)
Q Consensus 646 ~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 673 (839)
+ .|.+|++|||.|++||+|......
T Consensus 324 S---~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 324 S---MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred e---ccccEEEecCCCcceeeeecchhh
Confidence 9 899999999999999999987653
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=199.19 Aligned_cols=276 Identities=20% Similarity=0.285 Sum_probs=215.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.+||-.|+|| |-+.. +.+|++++ |+.=-+-+-++|.-+.+|.+|++ .|.+.... .+.. ....++
T Consensus 13 htrpvvdl~~s--~itp~-g~flisa~kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~-------~na~---~aasaa 78 (334)
T KOG0278|consen 13 HTRPVVDLAFS--PITPD-GYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLN-------KNAT---RAASAA 78 (334)
T ss_pred CCcceeEEecc--CCCCC-ceEEEEeccCCCchhccCCCCCcEEeeeccCc-ceeeeecC-------chhh---hhhhhc
Confidence 89999999999 53222 66777766 87767778889999999999887 58877776 4431 233335
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce-EEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~-~~~~ 173 (839)
.|-+.+|||.-++ ..++.+ .|..-|.+++|+. +.++|++|+.+..+||||++..+. ...+
T Consensus 79 adftakvw~a~tg---------------delhsf-~hkhivk~~af~~---ds~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 79 ADFTAKVWDAVTG---------------DELHSF-EHKHIVKAVAFSQ---DSNYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred ccchhhhhhhhhh---------------hhhhhh-hhhheeeeEEecc---cchhhhccchHHHhhhhhccCCCCCchhh
Confidence 5899999998763 344555 4888899999999 999999999999999999976543 3334
Q ss_pred ecCC---ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 174 HSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 174 ~~~~---~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
.++. +..+|+ ...+.|++.+.|+.||+||.+ ++..++
T Consensus 140 ~ghtg~Ir~v~wc-------~eD~~iLSSadd~tVRLWD~r---------------------------------Tgt~v~ 179 (334)
T KOG0278|consen 140 SGHTGGIRTVLWC-------HEDKCILSSADDKTVRLWDHR---------------------------------TGTEVQ 179 (334)
T ss_pred cCCCCcceeEEEe-------ccCceEEeeccCCceEEEEec---------------------------------cCcEEE
Confidence 4443 333443 345677888999999999999 777777
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCC
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDC 328 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg 328 (839)
.+. ...+|+++.++++|++|.++ .-+.|++||...-.. + ....-...|.+...+| +.++.|++|.
T Consensus 180 sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-----l------Ks~k~P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 180 SLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-----L------KSYKMPCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred EEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-----e------eeccCccccccccccCCCceEEecCcce
Confidence 775 46789999999999866554 557899999988655 2 3333445677777764 7899999999
Q ss_pred eEEEEcC-CCceEEEe-ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 329 TCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~-~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.++.||. +|+.+..+ ++|.+ +|.|+.|+|+|...++|+.||+|++|...
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEec
Confidence 9999999 88888886 89999 89999999999999999999999999884
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=213.88 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=216.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe----eeeEEeeecCceEEeEEecccccccCCCccceeeE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
|+..|+++++. |. |-.+++|+ |.+|++||.+... .-+.++-.+...|..++|+ +.|. .+
T Consensus 166 gtk~Vsal~~D--p~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-------~Tg~---~i 229 (641)
T KOG0772|consen 166 GTKIVSALAVD--PS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-------VTGD---QI 229 (641)
T ss_pred CceEEEEeeec--CC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-------CCCC---eE
Confidence 67789999999 88 78888888 9999999987432 2233333345579999999 6663 88
Q ss_pred EEEEcCcEEEEEEeeccC----CCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 91 VALFGEKRVKLFELNFEL----SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 91 l~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
|+++|....+|+|-+--. ..+.+| ..-+..-+||...++|.+|+| .+...++|++.|+++|+||+.+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY-------I~Dm~nTKGHia~lt~g~whP--~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY-------IRDMYNTKGHIAELTCGCWHP--DNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh-------hhhhhccCCceeeeecccccc--CcccceEEecCCCcEEEEecCC
Confidence 999999999999976311 011111 122345679999999999999 2556788999999999999986
Q ss_pred CceE-EEEe----cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 167 SSII-LEVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 167 ~~~~-~~~~----~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
.+.. ..+. ...+..+.++.| ++++.+||+|..||.|.+|+...-
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~---nrdg~~iAagc~DGSIQ~W~~~~~---------------------------- 349 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAW---NRDGKLIAAGCLDGSIQIWDKGSR---------------------------- 349 (641)
T ss_pred chhheeEEeeccCCCcccCceeeec---CCCcchhhhcccCCceeeeecCCc----------------------------
Confidence 5432 2222 233444455555 899999999999999999997510
Q ss_pred ccccceeeEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--
Q 003208 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (839)
Q Consensus 242 ~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 317 (839)
.....+..-.+|.. .|+||.|+++|++|++-+.|.++++||++..+.. +....-.....+-+.++|+
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-------L~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-------LNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-------hhhhcCCCccCCCCccccCCC
Confidence 02223444568887 9999999999999999999999999999986541 1101111122345678898
Q ss_pred CCEEEEEeC------CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 318 DSFIITAGE------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 318 ~~~l~s~~~------dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
..+|++|.. .|++.+||. +-..+.++..... .|..+.|+|.-+.|+.|+.||.+++|=
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCceEEEE
Confidence 367777753 478999998 6777777776665 688999999988899999999998864
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=8.3e-25 Score=196.04 Aligned_cols=288 Identities=16% Similarity=0.211 Sum_probs=232.0
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeE
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i 205 (839)
.+..||+.+|-.++|+|+.++|-+|++++.|+.-.+=+-.++.-+.++.++... +|+..+ +.+..+.|+++.|-+-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga-vw~~~l---~~na~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA-VWSATL---NKNATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc-eeeeec---Cchhhhhhhhcccchh
Confidence 345799999999999999889999999999999888888888899999888764 777766 5566778889999999
Q ss_pred EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 003208 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~ 285 (839)
++||.- ++..++.+. |+.-|..++|+.|.++|++|+.+..+|+||+
T Consensus 84 kvw~a~---------------------------------tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 84 KVWDAV---------------------------------TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred hhhhhh---------------------------------hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 999987 677777765 8899999999999999999999999999999
Q ss_pred ccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCE
Q 003208 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (839)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~ 362 (839)
+..+.. . ..+.+|++.|..+.|. ++.|++...|++||+||. ++..+..+.... +|.++.++++|++
T Consensus 130 n~p~Ap----p-----~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 130 NRPKAP----P-----KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRI 198 (334)
T ss_pred cCCCCC----c-----hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCE
Confidence 876542 2 3778999999999997 789999999999999999 888888887654 5999999999986
Q ss_pred EEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccc
Q 003208 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHG 440 (839)
Q Consensus 363 l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g 440 (839)
|.+ ...+.|++||... ..++.+ ..|. .|.+..+.|+. .++++.++.
T Consensus 199 lTi-a~gssV~Fwdaksf~~lKs~------------------k~P~-------------nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 199 LTI-AYGSSVKFWDAKSFGLLKSY------------------KMPC-------------NVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred EEE-ecCceeEEeccccccceeec------------------cCcc-------------ccccccccCCCceEEecCcce
Confidence 654 5567899999865 222211 1121 26777788865 566677888
Q ss_pred eEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCC
Q 003208 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (839)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~ 505 (839)
.++.++........ .+...+.+++-|+.++|++ ...++|++||+|+||....++
T Consensus 247 ~~~kfDy~TgeEi~---~~nkgh~gpVhcVrFSPdG--------E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIG---SYNKGHFGPVHCVRFSPDG--------ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEEeccCCceee---ecccCCCCceEEEEECCCC--------ceeeccCCCceEEEEEecCCC
Confidence 99988877665432 2223447899999997765 899999999999999875543
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.8e-25 Score=204.53 Aligned_cols=283 Identities=18% Similarity=0.241 Sum_probs=220.0
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC-------CceeEEEEeeccCCccceEEEEeecC
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-------ERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
+....+.|..|+| ++++|++|+.||.|.|||..+++.-..++.. ....+.++.| +.|...+|+|+.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F---SRDsEMlAsGsqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF---SRDSEMLASGSQD 284 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee---cccHHHhhccCcC
Confidence 3445688999999 9999999999999999999998765444311 1223455555 6888999999999
Q ss_pred CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
|.|++|.+. ++.+++.+. +|+..|+|+.|+.|+..+++++.|.++|
T Consensus 285 GkIKvWri~---------------------------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 285 GKIKVWRIE---------------------------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred CcEEEEEEe---------------------------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999 888888886 8999999999999999999999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccC-CceEEEEEc
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYD 357 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~-~~i~~~~~~ 357 (839)
+--+..+++ ++ .+.||.+.|....|. |..+++++.||+|++|+. +++++.+++.... .+|.++-.-
T Consensus 332 iHGlKSGK~-----LK-----EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 332 IHGLKSGKC-----LK-----EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred Eeccccchh-----HH-----HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999877 44 788999999999998 799999999999999999 8888888875432 267787776
Q ss_pred cCC-CEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEE
Q 003208 358 SLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYI 435 (839)
Q Consensus 358 ~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 435 (839)
|.+ ..++++...++|.+.+++++.++.+..-. ...+..-+.+.+|.| .+++
T Consensus 402 PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk---------------------------REgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK---------------------------REGGDFINAILSPKGEWIYC 454 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccceEEeeeccCC---------------------------ccCCceEEEEecCCCcEEEE
Confidence 654 57888999999999999887665543211 111334556678876 5566
Q ss_pred EeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 436 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
.+.++.+|.+.+..... +..+..+ ...+..+.-+ |..+++++-++||.+++|.
T Consensus 455 igED~vlYCF~~~sG~L---E~tl~Vh-EkdvIGl~HH--------PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGKL---ERTLPVH-EKDVIGLTHH--------PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecCce---eeeeecc-cccccccccC--------cccchhhhhcccchhhhcC
Confidence 77888888776655432 2333333 2334444433 5669999999999999993
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.5e-25 Score=210.03 Aligned_cols=277 Identities=16% Similarity=0.253 Sum_probs=214.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|...|.|+|=+ |. .-..+++|+ ||.|+|||+.+-+++.+++.|.+ .|.+|++. .. ..+.++
T Consensus 65 HrdGV~~lakh--p~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~-------~~-----~~~tvg 126 (433)
T KOG0268|consen 65 HRDGVSCLAKH--PN---KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVT-------QT-----SFFTVG 126 (433)
T ss_pred cccccchhhcC--cc---hhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEec-------cc-----ceEEec
Confidence 67789999988 87 225788888 99999999999999999999877 69999998 32 789999
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|++|+.|.+.. .+.+++.+- ..++.+.-+. .+..+||||. .|.|||.+...++..+.
T Consensus 127 dDKtvK~wk~~~----------------~p~~tilg~-s~~~gIdh~~---~~~~FaTcGe--~i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 127 DDKTVKQWKIDG----------------PPLHTILGK-SVYLGIDHHR---KNSVFATCGE--QIDIWDEQRDNPVSSMS 184 (433)
T ss_pred CCcceeeeeccC----------------Ccceeeecc-cccccccccc---ccccccccCc--eeeecccccCCccceee
Confidence 999999999873 344555443 3466777666 6778899875 49999998888888776
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
-.... +.++.| ++....+|++++.|+.|.+||++ ...+++...
T Consensus 185 wG~Dt-i~svkf--NpvETsILas~~sDrsIvLyD~R---------------------------------~~~Pl~KVi- 227 (433)
T KOG0268|consen 185 WGADS-ISSVKF--NPVETSILASCASDRSIVLYDLR---------------------------------QASPLKKVI- 227 (433)
T ss_pred cCCCc-eeEEec--CCCcchheeeeccCCceEEEecc---------------------------------cCCccceee-
Confidence 44332 445555 23445678888899999999999 444444332
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 332 (839)
-.-.-+.|+|+|++-.++++++|..++.+|++.-.. ++ ....+|.+.|.++.|+ |.-+++|+.|.+|+|
T Consensus 228 ~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------p~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 228 LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-------PL--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred eeccccceecCccccceeeccccccceehhhhhhcc-------cc--hhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 123456799999888899999999999999987543 22 2778999999999999 789999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
|.. .+.....+....-..|.++.|+.|.+++++|+.|+.|++|...
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999 4433222221111259999999999999999999999999874
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.3e-24 Score=217.80 Aligned_cols=284 Identities=20% Similarity=0.320 Sum_probs=227.5
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE--EEecCCceeEEEEeeccCCccceEEEEe
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG 199 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~l~sg 199 (839)
.++.+.+.+|...|..+++.+ +..++++|.|+++++|+-...+-+. .+..+...+..++++.. .++..+++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD----GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC----CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEee
Confidence 467788999999999998864 5578999999999999987665543 45667777777666643 456679999
Q ss_pred ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003208 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (839)
Q Consensus 200 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~ 279 (839)
+.|..|.+|.+. ...++..++||+..|.+++...++. ++|||.|.+
T Consensus 78 ~~D~~i~v~~~~---------------------------------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 78 GMDTTIIVFKLS---------------------------------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccceEEEEecC---------------------------------CCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 999999999998 7888999999999999999888876 999999999
Q ss_pred EEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEcc
Q 003208 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~ 358 (839)
+++|....... .+.+|+..||++++- .+.++||+.|.+|++|.- ++.++++.+|.. .|..+++-+
T Consensus 124 akvW~~~~l~~------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD-~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRIGELVY------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTD-CVRGLAVLD 189 (745)
T ss_pred eEEecchhhhc------------ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhccchh-heeeeEEec
Confidence 99998866433 789999999999876 579999999999999996 788999999998 799999988
Q ss_pred CCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe-cCCeEEEEe
Q 003208 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT-SEDTLYIAT 437 (839)
Q Consensus 359 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ 437 (839)
++ .+++++.||.|++|++.+..+.+..+|. ..|.++... +++.++.++
T Consensus 190 ~~-~flScsNDg~Ir~w~~~ge~l~~~~ght------------------------------n~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 190 DS-HFLSCSNDGSIRLWDLDGEVLLEMHGHT------------------------------NFVYSISMALSDGLIVSTG 238 (745)
T ss_pred CC-CeEeecCCceEEEEeccCceeeeeeccc------------------------------eEEEEEEecCCCCeEEEec
Confidence 75 4789999999999999887776666554 568888844 455666667
Q ss_pred ccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCC
Q 003208 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~ 505 (839)
.++.+.+|+.- ...+....+ ...+++..+... .-+++|+.||.|++|..+..+
T Consensus 239 EDrtlriW~~~-----e~~q~I~lP-ttsiWsa~~L~N---------gDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 239 EDRTLRIWKKD-----ECVQVITLP-TTSIWSAKVLLN---------GDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCceEEEeecC-----ceEEEEecC-ccceEEEEEeeC---------CCEEEeccCceEEEEEecccc
Confidence 78888766543 222333333 446777776655 467899999999999886433
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1e-23 Score=203.80 Aligned_cols=278 Identities=17% Similarity=0.273 Sum_probs=230.1
Q ss_pred eeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
.++++... |. ...+++|. |..+.++|..+.+.+..+++|.. .|+.+.++ |+. +..+..+.|.
T Consensus 221 gi~ald~~--~s----~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~-------~~~---~~v~~aSad~ 283 (506)
T KOG0289|consen 221 GITALDII--PS----SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFH-------KDL---DTVITASADE 283 (506)
T ss_pred CeeEEeec--CC----CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEec-------cch---hheeecCCcc
Confidence 47788777 64 56778877 77999999999999999998765 79999999 664 2667777899
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC-
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP- 176 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~- 176 (839)
.|+||.....+ .......|..+|+.+..+| .++||++++.|++..+.|++++..+......
T Consensus 284 ~i~vws~~~~s---------------~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 284 IIRVWSVPLSS---------------EPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred eEEeecccccc---------------Cccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 99999987643 3345678999999999999 9999999999999999999999988777654
Q ss_pred CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC
Q 003208 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (839)
Q Consensus 177 ~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (839)
....+.++.|| |||.++.+|+.||.|++||+. .+..+..|.+|+
T Consensus 346 s~v~~ts~~fH---pDgLifgtgt~d~~vkiwdlk---------------------------------s~~~~a~Fpght 389 (506)
T KOG0289|consen 346 SDVEYTSAAFH---PDGLIFGTGTPDGVVKIWDLK---------------------------------SQTNVAKFPGHT 389 (506)
T ss_pred ccceeEEeeEc---CCceEEeccCCCceEEEEEcC---------------------------------CccccccCCCCC
Confidence 33445667774 899999999999999999998 667788899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEc
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 334 (839)
++|..|+|+.+|-+|+++++|+.|++||++..+. .+.+ .+ .....+.++.|. +.+++.++.|=.|++++
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt~---~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKTI---QL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----ccee---ec-cccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999999999999999998654 2311 22 223368888887 89999998887777777
Q ss_pred C---CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 335 S---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 335 ~---~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
- +-.++..+..|.+ ..+++.|....++++++|.|..++++.+
T Consensus 461 k~~k~W~~~~~~~~~sg-~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSG-LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeehhhhccc-ccceeeecccceEEeeccchhheEEeec
Confidence 4 3456777888887 5889999999999999999999988864
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=4e-25 Score=212.40 Aligned_cols=203 Identities=19% Similarity=0.284 Sum_probs=166.7
Q ss_pred eeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc--eEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
....+..|.+.+..+.|.+ +...|++|+.|..|++|+....+ .+.++.+.. ..+.++.+ .+++..+++++.
T Consensus 167 ~~~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~---d~~~~~~iAas~ 239 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDF---DSDNKHVIAASN 239 (459)
T ss_pred hhhhhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeee---cCCCceEEeecC
Confidence 3456778999999999999 88899999999999999997655 334443332 23556665 678889999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
|+.+++|++. ..+..+++.||++.|+++.|......+++|+.|++|+
T Consensus 240 d~~~r~Wnvd---------------------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 240 DKNLRLWNVD---------------------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred CCceeeeecc---------------------------------chhhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 9999999998 7888999999999999999988777799999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCC
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~ 360 (839)
+||+....+ .+ ..-..+.+..+...+..+++|-.|++||.||. ...+......+. .|+++..++++
T Consensus 287 ~WDl~k~~C-----~k------t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g 353 (459)
T KOG0288|consen 287 LWDLQKAYC-----SK------TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDG 353 (459)
T ss_pred hhhhhhhhe-----ec------cccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCC
Confidence 999998766 22 11223445566666788999999999999998 777777777665 49999999999
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 003208 361 SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 361 ~~l~t~~~dg~i~iw~~~~ 379 (839)
..|.+++.|.++.++|+++
T Consensus 354 ~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred eEEeeecCCCceeeeeccc
Confidence 9999999999999999854
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=5.6e-24 Score=209.85 Aligned_cols=308 Identities=14% Similarity=0.211 Sum_probs=211.2
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc----eEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
......+++|+..|.++++.| .|..|++|+.|.+|++||+.... ..+.+...+.-.+.++.+ ++.+..|+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y---s~Tg~~iL 230 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY---SVTGDQIL 230 (641)
T ss_pred ccceEeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeee---cCCCCeEE
Confidence 344567889999999999999 99999999999999999997532 233444333334555555 57788888
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSD 276 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~ 276 (839)
+.+.....+|+|-...+...... ...--.-+...+||...++|.+|+|.. ..+++|+.
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~K---------------------GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSK---------------------GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred EEecCcceeEEccCCceeeeeec---------------------cchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence 87778899999976221111000 000112234457999999999999965 57999999
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCC---ceEEEe-ecccC-C
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG---KQLKMI-KEHIG-R 349 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~---~~~~~~-~~h~~-~ 349 (839)
||++|+||+...+.. .+.+++....+..-+++.++|+ +++|++|+.||.|.+|+..+ ++...+ ..|.. .
T Consensus 290 DgtlRiWdv~~~k~q----~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKSQ----LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred CCcEEEEecCCchhh----eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence 999999999876542 4444443445566678999999 68999999999999999722 222222 33433 2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC--cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEE
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 427 (839)
.|+|+.|+++|++|++-|.|+++++||++. +++....+-. + .-+-+.++|
T Consensus 366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-----------------t-----------~~~~tdc~F 417 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-----------------T-----------PFPGTDCCF 417 (641)
T ss_pred ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-----------------c-----------cCCCCcccc
Confidence 599999999999999999999999999965 3333222211 1 123578899
Q ss_pred ecCCeEEEEec-------cceEEEEEecCCCCceeEEEeeecC-CCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEE
Q 003208 428 TSEDTLYIATN-------HGYLYHTKLCDMDSVNWNKILQVSE-GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (839)
Q Consensus 428 ~~~~~~~~~~~-------~g~i~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~ 499 (839)
+|+.++++++. .|.+++++-.. +..++.... ...+..+.+++.- +.+.+|+.||.+++|
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t-----~d~v~ki~i~~aSvv~~~WhpkL--------NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMT-----LDTVYKIDISTASVVRCLWHPKL--------NQIFAGSGDGTAHVY 484 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccc-----eeeEEEecCCCceEEEEeecchh--------hheeeecCCCceEEE
Confidence 99998887642 35555544322 223333321 3445555555543 788899999999988
Q ss_pred EE
Q 003208 500 RV 501 (839)
Q Consensus 500 ~~ 501 (839)
--
T Consensus 485 Yd 486 (641)
T KOG0772|consen 485 YD 486 (641)
T ss_pred EC
Confidence 43
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=9.2e-24 Score=216.05 Aligned_cols=281 Identities=15% Similarity=0.288 Sum_probs=226.5
Q ss_pred eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce
Q 003208 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (839)
Q Consensus 56 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (839)
+-+.+.+|+. .|..+++. ++. ..+..+.|+++++|+-.... ....+.+.+|.+.|
T Consensus 6 ls~~l~gH~~-DVr~v~~~-------~~~----~i~s~sRd~t~~vw~~~~~~-------------~l~~~~~~~~~g~i 60 (745)
T KOG0301|consen 6 LSHELEGHKS-DVRAVAVT-------DGV----CIISGSRDGTVKVWAKKGKQ-------------YLETHAFEGPKGFI 60 (745)
T ss_pred eEEEeccCcc-chheeEec-------CCe----EEeecCCCCceeeeeccCcc-------------cccceecccCccee
Confidence 4456666655 48888876 442 46666779999999986543 45556788899999
Q ss_pred EE-EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 136 FD-VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 136 ~~-~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
.+ +++.+ .++..|++|+.|.+|.+|......++..+.+|... +.++.. ..++ .+++|+.|.++++|...
T Consensus 61 ~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn-VC~ls~---~~~~-~~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 61 ANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN-VCSLSI---GEDG-TLISGSWDSTAKVWRIG--- 130 (745)
T ss_pred eccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccc-eeeeec---CCcC-ceEecccccceEEecch---
Confidence 88 88876 25667999999999999999999999999988764 334433 2333 49999999999999865
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 294 (839)
++...+.+|+..|.+++.-|++ .++|||.|++|++|.-.+...
T Consensus 131 --------------------------------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~---- 173 (745)
T KOG0301|consen 131 --------------------------------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLK---- 173 (745)
T ss_pred --------------------------------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhh----
Confidence 4455689999999999999988 899999999999998744322
Q ss_pred CceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEE
Q 003208 295 SIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (839)
Q Consensus 295 ~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~ 373 (839)
++.+|+..|..+++- +..++|++.||.|+.|+++|+.+.++.+|.. -|.++....++..++++|.|++++
T Consensus 174 --------tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 174 --------TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred --------hhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEE
Confidence 889999999999998 4599999999999999999999999999999 699999888888999999999999
Q ss_pred EEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEec
Q 003208 374 VHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (839)
Q Consensus 374 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~ 448 (839)
+|+.. .+.+ .+..|. ..|-++.+.++|.+++++++|.++.+...
T Consensus 245 iW~~~-e~~q------------------~I~lPt------------tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD-ECVQ------------------VITLPT------------TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC-ceEE------------------EEecCc------------cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99974 2222 222232 23777788889999999999999877654
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=8.5e-25 Score=202.93 Aligned_cols=279 Identities=18% Similarity=0.236 Sum_probs=207.6
Q ss_pred CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC
Q 003208 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 269 (839)
+||++++++|+.||.|.+|+..+++..... ..+.-..+--|.++|.|+.|+.|..
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDL-------------------------kYQAqd~fMMmd~aVlci~FSRDsE 276 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-------------------------KYQAQDNFMMMDDAVLCISFSRDSE 276 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhh-------------------------hhhhhcceeecccceEEEeecccHH
Confidence 699999999999999999999865543311 1122223456889999999999999
Q ss_pred EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecc
Q 003208 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (839)
Q Consensus 270 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h 346 (839)
.+++|+.||.|++|.+.++.+ ++ ..-..|+..|+|+.|+ +..+++++.|.++|+-.+ +|++++.+++|
T Consensus 277 MlAsGsqDGkIKvWri~tG~C-----lR----rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQC-----LR----RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred HhhccCcCCcEEEEEEecchH-----HH----HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc
Confidence 999999999999999999887 33 2345899999999999 689999999999999999 99999999999
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEE
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 425 (839)
.. -|....|.++|..+++++.||+|++|+.+. .++.++..-.. +-+|..+
T Consensus 348 sS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~----------------------------d~~vnsv 398 (508)
T KOG0275|consen 348 SS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT----------------------------DYPVNSV 398 (508)
T ss_pred cc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC----------------------------cccceeE
Confidence 98 699999999999999999999999999954 66666653221 1234555
Q ss_pred EEecCC--eEEEEeccceEEEEEecCCCCceeEEEeee-cCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEc
Q 003208 426 HLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 426 ~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
-..|.+ .++++.....++..++...-. +....+ .+.+...+..++|. +.++...++|+.++.|.+.
T Consensus 399 ~~~PKnpeh~iVCNrsntv~imn~qGQvV---rsfsSGkREgGdFi~~~lSpk--------GewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 399 ILLPKNPEHFIVCNRSNTVYIMNMQGQVV---RSFSSGKREGGDFINAILSPK--------GEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred EEcCCCCceEEEEcCCCeEEEEeccceEE---eeeccCCccCCceEEEEecCC--------CcEEEEEccCcEEEEEEee
Confidence 555432 555555555665544422111 011112 23455555556554 4899999999999999998
Q ss_pred CCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEee
Q 003208 503 GDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (839)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd 551 (839)
++.++..... ++..+.+ .+-.|....|++-+.||.+++|.
T Consensus 468 sG~LE~tl~V-------hEkdvIG--l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 468 SGKLERTLPV-------HEKDVIG--LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCceeeeeec-------ccccccc--cccCcccchhhhhcccchhhhcC
Confidence 8775533222 2333333 34567788999999999999995
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6e-24 Score=196.82 Aligned_cols=296 Identities=14% Similarity=0.252 Sum_probs=228.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|...|..++.. . +++++.+++ |.+.+||.+++|..+.++.+|.+ .|++|.|+ +.+. .+++.+
T Consensus 147 HkDGiW~Vaa~--~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-SVNsikfh-------~s~~---L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAAD--S----TQPICGTASADHTARIWSLESGACLATYTGHTG-SVNSIKFH-------NSGL---LLLTAS 209 (481)
T ss_pred cccceeeehhh--c----CCcceeecccccceeEEeeccccceeeeccccc-ceeeEEec-------cccc---eEEEcc
Confidence 67778877766 3 367777766 89999999999999999999877 69999999 5552 667778
Q ss_pred cCcEEEEEEeec----cC--CCCCCC-----------CC--------ccccceeeeEeccCCCcceEEEEEeeccCCCcE
Q 003208 95 GEKRVKLFELNF----EL--SPNSQY-----------QP--------ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (839)
Q Consensus 95 ~~~~i~iw~~~~----~~--~~~~~~-----------~~--------~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~ 149 (839)
||++.+||.... +. .+...- .+ +....-.++..+.+|...|.++.|.. .++.
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg~Q 286 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GGQQ 286 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Ccce
Confidence 899999998331 11 000000 00 01112345678899999999999999 9999
Q ss_pred EEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 150 las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
+++++.|.+..+||+++++.+..+.++..-...+ .- -|...++++.+.|.+.++||.+
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc-st---HptQrLVvTsSrDtTFRLWDFR------------------ 344 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHC-ST---HPTQRLVVTSSRDTTFRLWDFR------------------ 344 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhcccc-cc---CCcceEEEEeccCceeEeccch------------------
Confidence 9999999999999999999999988876543322 22 3777899999999999999988
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (839)
..-..+..|+||++.|+++.|..+. .+++|++|++|++||+++.... + ......+
T Consensus 345 --------------eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----l------ATIRtdS 399 (481)
T KOG0300|consen 345 --------------EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----L------ATIRTDS 399 (481)
T ss_pred --------------hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----c------eeeecCC
Confidence 1345677899999999999998764 6899999999999999986542 1 2223456
Q ss_pred ceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEee-----cccCCceEEEEEccCC--CEEEEEeCCCcEEEEecCC
Q 003208 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 310 ~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~-----~h~~~~i~~~~~~~~~--~~l~t~~~dg~i~iw~~~~ 379 (839)
++..++.+ ...|+.--.+..|++||++|..+..+. +|.. .|.|.+|..+- .-|+++|.|..+.-|++..
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce-eeeeeeccccCcccccccccccceeeeeEecc
Confidence 77778877 457777788899999999887666554 5665 69999997543 4689999999999998843
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=191.46 Aligned_cols=313 Identities=16% Similarity=0.238 Sum_probs=213.6
Q ss_pred cccCCCc-eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCee--eeEE--eeecCceEEeEEecccccccCC
Q 003208 9 WRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPF--QVFHGIRLHGISCNFINCTEGS 82 (839)
Q Consensus 9 w~~~~~~-~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~--~~~~--~~~~~~~v~~i~~~~~~~~~~~ 82 (839)
|++...+ |.+.||+|+|+ .| |++|++.+ |+.|+||++.+-+. .+.+ ...-+ ..+.+.|+ |
T Consensus 77 l~~~~LKgH~~~vt~~~Fs--Sd----GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~Fa-------p 142 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFS--SD----GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFA-------P 142 (420)
T ss_pred hhhhhhhccCCceeeeEEc--CC----CceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEEC-------C
Confidence 4443333 88999999999 88 88888877 89999999986431 1111 11122 46788899 7
Q ss_pred CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEE
Q 003208 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (839)
Q Consensus 83 ~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vw 162 (839)
|.++ ..+.+-.+.++++|.+......+-. ...+...-.+.-+.|.-.|..+-... ++.+|++++.|..|++|
T Consensus 143 Dc~s--~vv~~~~g~~l~vyk~~K~~dG~~~---~~~v~~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~i~lw 214 (420)
T KOG2096|consen 143 DCKS--VVVSVKRGNKLCVYKLVKKTDGSGS---HHFVHIDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTKICLW 214 (420)
T ss_pred Ccce--EEEEEccCCEEEEEEeeecccCCCC---cccccccccccchhcccceEEEeecC---CceEEEEecCCCcEEEE
Confidence 7641 4444556889999998754321100 00011122223356777787777766 88899999999999999
Q ss_pred ecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
++. |+.+..+....... +.++. +|+|.+|++++..-.|++|.+-..+....+
T Consensus 215 ~lk-Gq~L~~idtnq~~n-~~aav---SP~GRFia~~gFTpDVkVwE~~f~kdG~fq----------------------- 266 (420)
T KOG2096|consen 215 DLK-GQLLQSIDTNQSSN-YDAAV---SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ----------------------- 266 (420)
T ss_pred ecC-Cceeeeeccccccc-cceee---CCCCcEEEEecCCCCceEEEEEeccCcchh-----------------------
Confidence 997 88888776544322 22222 799999999999999999998643322111
Q ss_pred cccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeee--ceEeeccccceEEeEECC-C
Q 003208 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG--SSVLYGHNARVWDCCLTD-S 319 (839)
Q Consensus 243 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~-~ 319 (839)
....+..++||...|..++|+++.+++++.|.||++|+||.+-......++ +.++ +..+..-.+....+..+| .
T Consensus 267 --ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp-k~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 267 --EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP-KILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred --hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc-hHhhcCCcchhhcCCCceEEEeCCCC
Confidence 345677899999999999999999999999999999999987543221111 1111 112222223334666663 4
Q ss_pred EEEEEeCCCeEEEEcC-CCceEEEeec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 320 FIITAGEDCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~-~~~~~~~~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
.++..+...+++++.. +|+....+.. |.+ .|.+++|+++|++++|+| |..++++.
T Consensus 344 ~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 344 DSLAVSFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cEEEeecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5555566678999988 6766666544 555 799999999999999988 55777765
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-23 Score=214.98 Aligned_cols=263 Identities=14% Similarity=0.212 Sum_probs=215.9
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~ 113 (839)
...|+.|.+..|++|+..+++........ ...|+++.|+ ++| ..|+++ .+|.|.|||...
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws-------~~G----~~LavG~~~g~v~iwD~~~------- 248 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWS-------PDG----SHLAVGTSDGTVQIWDVKE------- 248 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEEC-------CCC----CEEEEeecCCeEEEEehhh-------
Confidence 46899999999999999999866555543 4579999999 888 555554 589999999986
Q ss_pred CCCccccceeeeEeccC-CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 114 YQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.......++...+..+.+ +++
T Consensus 249 --------~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw---s~d 312 (484)
T KOG0305|consen 249 --------QKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW---SPD 312 (484)
T ss_pred --------ccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE---CCC
Confidence 345667777 99999999995 5788999999999999998876655522233344556666 789
Q ss_pred ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEE
Q 003208 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKL 271 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l 271 (839)
+.++|+|+.|+.+.|||.. ...+...+..|...|.+++|+| ....|
T Consensus 313 ~~~lASGgnDN~~~Iwd~~---------------------------------~~~p~~~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGL---------------------------------SPEPKFTFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred CCeeccCCCccceEeccCC---------------------------------CccccEEEeccceeeeEeeeCCCccCce
Confidence 9999999999999999987 6677888999999999999999 55678
Q ss_pred EEEe--CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEE--EeCCCeEEEEcC-CCceEEEee
Q 003208 272 VSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIIT--AGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 272 ~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s--~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
|+|+ .|++|++||..++.. .......+.|..+.|+. +-|++ |..++.|.||+. +-+.+..+.
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~-----------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGAR-----------IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcE-----------ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 8864 699999999998766 23344567899999994 22444 345678999999 788899999
Q ss_pred cccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 345 ~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+|..+ |..++++|||..+++|+.|.++++|++
T Consensus 429 gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 429 GHTSR-VLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCcce-eEEEEECCCCCEEEEecccCcEEeccc
Confidence 99995 999999999999999999999999998
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=206.49 Aligned_cols=273 Identities=21% Similarity=0.291 Sum_probs=209.4
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
+.|..++|+|.+ |. -+++.+.-.+.||+.... .....+....+.|.+++|-.
T Consensus 27 ~~vssl~fsp~~----P~------d~aVt~S~rvqly~~~~~---------------~~~k~~srFk~~v~s~~fR~--- 78 (487)
T KOG0310|consen 27 NSVSSLCFSPKH----PY------DFAVTSSVRVQLYSSVTR---------------SVRKTFSRFKDVVYSVDFRS--- 78 (487)
T ss_pred CcceeEecCCCC----CC------ceEEecccEEEEEecchh---------------hhhhhHHhhccceeEEEeec---
Confidence 469999999654 54 467777788999998753 33444556678899999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
||.+||.|...|.|+|+|+.+...++.+..+... +....|. ..++..+++|+.|+.+++||+.
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap-v~~~~f~--~~d~t~l~s~sDd~v~k~~d~s-------------- 141 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP-VHVTKFS--PQDNTMLVSGSDDKVVKYWDLS-------------- 141 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCc-eeEEEec--ccCCeEEEecCCCceEEEEEcC--------------
Confidence 9999999999999999997665555555554432 2333331 3566788889999999999998
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
+......+.+|++.|.|.+|+|.. ..++|||.||.||+||.+..... ...
T Consensus 142 -------------------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~----------v~e 192 (487)
T KOG0310|consen 142 -------------------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR----------VVE 192 (487)
T ss_pred -------------------CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce----------eEE
Confidence 455566889999999999999965 57899999999999999886321 356
Q ss_pred eccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CC-ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc
Q 003208 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 305 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~-~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~ 380 (839)
..|..+|..+.|- +..+++++. ..++|||+ .| +.+..+..|+. .|+|+++..++..|++|+-|+.|++||...-
T Consensus 193 lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccce
Confidence 6899999999987 468888774 57999999 34 55555555776 7999999999999999999999999997441
Q ss_pred CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEE
Q 003208 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYH 444 (839)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~ 444 (839)
.-++....| ++|.+++.+|++ .++++..+|.+..
T Consensus 271 -----------------Kvv~s~~~~-------------~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 271 -----------------KVVHSWKYP-------------GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred -----------------EEEEeeecc-------------cceeeEEecCCCceEEEecccceeee
Confidence 112233333 469999999977 5667777877643
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=6.5e-23 Score=185.44 Aligned_cols=271 Identities=13% Similarity=0.141 Sum_probs=215.2
Q ss_pred CceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEe--eecCceEEeEEecccccccCCCccceeeE
Q 003208 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ--VFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 14 ~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
..|.++|.+|+|+ -+ |..|++|+ |+++.||++..++.+.... .|++ .|-.++|.+.+ || .+
T Consensus 17 ~~~~~~v~Sv~wn--~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~~----~d-----~~ 80 (313)
T KOG1407|consen 17 QGHVQKVHSVAWN--CD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPKH----PD-----LF 80 (313)
T ss_pred hhhhhcceEEEEc--cc----CceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCCC----Cc-----ce
Confidence 3488999999999 77 89999999 9999999998775554433 3443 58888898654 55 78
Q ss_pred EEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE
Q 003208 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (839)
Q Consensus 91 l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~ 170 (839)
.++++|++|++||+.. .++.+....-.+.| -+.|+| ++++++.+..|..|.+.|.++.+..
T Consensus 81 atas~dk~ir~wd~r~---------------~k~~~~i~~~~eni-~i~wsp---~g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRS---------------GKCTARIETKGENI-NITWSP---DGEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred EEecCCceEEEEEecc---------------CcEEEEeeccCcce-EEEEcC---CCCEEEEecCcccEEEEEeccccee
Confidence 8889999999999985 44555554444444 478999 9999999999999999999887776
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
...+.. .....+.++ .++.+++.-+..|.|.|.... ..+++.
T Consensus 142 ~~~~~~--~e~ne~~w~---~~nd~Fflt~GlG~v~ILsyp---------------------------------sLkpv~ 183 (313)
T KOG1407|consen 142 NEEQFK--FEVNEISWN---NSNDLFFLTNGLGCVEILSYP---------------------------------SLKPVQ 183 (313)
T ss_pred ehhccc--ceeeeeeec---CCCCEEEEecCCceEEEEecc---------------------------------cccccc
Confidence 554322 122233332 334445544556899998887 788899
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 328 (839)
.+++|.....||.|+|+|+++|+|+.|..+.+||++.--+ .+ .+..+.-+|..+.|+ +++|++|++|.
T Consensus 184 si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-----~R-----~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 184 SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-----ER-----CISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-----he-----eeccccCceEEEEeccCcceeeccCccc
Confidence 9999999999999999999999999999999999988655 33 666788899999998 89999999999
Q ss_pred eEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
.|-|=++ +|..+..++.. + +...++|+|...+||-++.|
T Consensus 254 ~IDIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecC
Confidence 9999998 89888888643 4 68899999999988887765
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.9e-22 Score=175.44 Aligned_cols=301 Identities=14% Similarity=0.202 Sum_probs=210.0
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
..+.|.+++|+ |.| .+.+++ ..++++|-....-..+...-+........+...-+.|.+.|.|.+|+|
T Consensus 31 dsqairav~fh-------p~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFH-------PAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEec-------CCC----ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 45679999999 888 555554 468888876542211111100000011223345567999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEecCCCceEE-----EEecCCceeEEEEeeccCCcc-ceEEEEe-ecCCeEEEEEeecccc
Q 003208 143 VCNGNRSLAIGCSDNSIRVWDISNSSIIL-----EVHSPERCLLYSMKLWGDNLE-ALRIASG-TIYNEIIVWKVDWEHV 215 (839)
Q Consensus 143 ~~~~~~~las~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~-~~~l~sg-~~dg~i~vw~~~~~~~ 215 (839)
+|++||+|+.|.+|++..+....+-. .+..+. ..+-.++|...+.. +.+|+++ ..|..|++-|..
T Consensus 100 ---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~---- 171 (350)
T KOG0641|consen 100 ---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG---- 171 (350)
T ss_pred ---ccCeEEecCCCceEEEEecccccccccCcceeeeecC-CceeeeEEecCCCcCceEEEecCCCcceEEEeecC----
Confidence 99999999999999997665433211 122222 23445665544333 4456654 457788888887
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 295 (839)
.++.++.+.||++.|.++ ++=++-.+++|+.|.+||+||++-..+
T Consensus 172 -----------------------------~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~----- 216 (350)
T KOG0641|consen 172 -----------------------------RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC----- 216 (350)
T ss_pred -----------------------------CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-----
Confidence 788899999999999987 344678999999999999999998766
Q ss_pred ceeeeceEeec---cccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 296 IEEVGSSVLYG---HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 296 ~~~~~~~~~~~---h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
+..+.. .+.+ ..+.|.+++.. +.++++|-.|..+.+||+ .++++..+..|.. .|.++.|+|...++++++.|
T Consensus 217 v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 217 VNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEeccc
Confidence 343321 2221 23567777776 789999999999999999 7899999999998 59999999999999999999
Q ss_pred CcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEE
Q 003208 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHT 445 (839)
Q Consensus 370 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~ 445 (839)
..|++-|+++...+++... ....|.+.+..+.|.|++ .++.++.+...-.|
T Consensus 295 ~~ikltdlqgdla~el~~~-------------------------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELPIM-------------------------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred ceEEEeecccchhhcCceE-------------------------EEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 9999999987554433211 112344556777888876 45555555555433
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=7.4e-23 Score=185.09 Aligned_cols=274 Identities=13% Similarity=0.173 Sum_probs=210.1
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe--cCCceeEEEEeeccCCccceEEEEeecCC
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
+.+++|...|.+++|+. +|..||+|+.|+++.+|+++......... ++.. .+-.+.+ ..+...++++++.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w--~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCW--DPKHPDLFATASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhhee--CCCCCcceEEecCCc
Confidence 56778999999999999 99999999999999999998775544432 2222 1222333 256677999999999
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iw 283 (839)
+|++||.+ ..++........+.| -+.|+|+|++++.++.|..|.+.
T Consensus 88 ~ir~wd~r---------------------------------~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 88 TIRIWDIR---------------------------------SGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFI 133 (313)
T ss_pred eEEEEEec---------------------------------cCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEE
Confidence 99999999 777877776544444 57899999999999999999999
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCC
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~ 360 (839)
|.++.+.. ........+.-+.|+ +++++.....|+|.|... +.+++..++.|.. ...||.|+|+|
T Consensus 134 d~r~~~~~-----------~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~G 201 (313)
T KOG1407|consen 134 DARTYKIV-----------NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDG 201 (313)
T ss_pred Eeccccee-----------ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCC
Confidence 99986651 233334455666776 677777777899999998 8899999999998 68999999999
Q ss_pred CEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEecc
Q 003208 361 SLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (839)
Q Consensus 361 ~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 439 (839)
+++|+|+.|..+.+||++. .+.+.+. ..+-+|+.+.|+.+|++++++++
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~is------------------------------RldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCIS------------------------------RLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeec------------------------------cccCceEEEEeccCcceeeccCc
Confidence 9999999999999999954 3333222 22346999999999999998877
Q ss_pred ceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCC
Q 003208 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (839)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~d 493 (839)
...+ ++-..++.. ++.+.+..++...++.+|.. .+||-++.|
T Consensus 252 Dh~I--DIA~vetGd--~~~eI~~~~~t~tVAWHPk~--------~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFI--DIAEVETGD--RVWEIPCEGPTFTVAWHPKR--------PLLAYACDD 293 (313)
T ss_pred cceE--EeEecccCC--eEEEeeccCCceeEEecCCC--------ceeeEEecC
Confidence 6554 343333333 55567778889999998875 666666554
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.8e-23 Score=189.26 Aligned_cols=277 Identities=19% Similarity=0.266 Sum_probs=212.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw 333 (839)
.++.|.+|.|+|.+..|+.++.||++++||+..... .....|..++.+++|. ...+++|+.||.|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------KLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY 80 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------hhheecCCceeeeeccCCceEEEeccCceEEEE
Confidence 467899999999999999999999999999988755 2566789999999999 5899999999999999
Q ss_pred cCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCc-cCcCCCCcccccCCCcceEEeecCCCccce
Q 003208 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (839)
Q Consensus 334 ~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (839)
|++......+..|.. +|.++.+++....+++||.|++|++||.+.... .++.
T Consensus 81 Dln~~~~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-------------------------- 133 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-------------------------- 133 (323)
T ss_pred EecCCcceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------------
Confidence 997777777778887 799999998888999999999999999965211 1110
Q ss_pred eeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCC
Q 003208 413 RLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (839)
Q Consensus 413 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~ 492 (839)
..+.|.++.... +.+++++.+..+..|++.+..... +.....-..++.|+++.|.. .-.++++.
T Consensus 134 -----~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~--------eGy~~sSi 197 (323)
T KOG1036|consen 134 -----QGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNG--------EGYVVSSI 197 (323)
T ss_pred -----cCceEEEEeccC-CEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCC--------CceEEEee
Confidence 112477777664 489999999999999887765422 23333445678888887753 56788899
Q ss_pred CccEEEEEEcCCCCCCcceeeeEeeccceeEEeeE----EEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccce
Q 003208 493 KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGT----YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN 568 (839)
Q Consensus 493 dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 568 (839)
||.|.+=.++...........++++.........+ .++|+|--+.|+||+.||.|.+||+...+...
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~--------- 268 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK--------- 268 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh---------
Confidence 99999877766544455566777776544321111 13578888889999999999999998765311
Q ss_pred eeeeeccccccCceEEEEeeecCCCEEEEecC
Q 003208 569 VFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (839)
Q Consensus 569 ~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~ 600 (839)
++. +....|.+++|+.||..||+|+.
T Consensus 269 -----q~~-~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 269 -----QLA-KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -----hcc-CCCCceEEEEeccCCCeEEEEec
Confidence 221 23567999999999999999974
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.9e-24 Score=214.42 Aligned_cols=237 Identities=20% Similarity=0.362 Sum_probs=191.5
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS- 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~- 167 (839)
.+++++.|+.|++|+......... -.....++.|.+||++++... +++.|++++.|-+|++|+...+
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s---------~~~~asme~HsDWVNDiiL~~---~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPS---------TPYIASMEHHSDWVNDIILCG---NGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcc---------cchhhhhhhhHhHHhhHHhhc---CCCceEEecCCceEEEeecccCc
Confidence 577777899999999976542111 124678889999999999988 8889999999999999999876
Q ss_pred -ceEEEEecC---CceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc--ccCCCCCCCccCCCCCCCceeeEeec
Q 003208 168 -SIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV--APLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 168 -~~~~~~~~~---~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
-++.++..| ..|+++. .++..++|+|+-|+.|.+||+..+.. ...
T Consensus 107 ~~c~stir~H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~~~~l~~s----------------------- 157 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTGTATLVAS----------------------- 157 (735)
T ss_pred chhHhhhhcccchheeeeec------ccCceeEEecCCCccEEEEEccCcchhhhhh-----------------------
Confidence 344444433 3444442 36788999999999999999983311 000
Q ss_pred ccccceeeEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--C
Q 003208 242 QQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D 318 (839)
Q Consensus 242 ~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~ 318 (839)
........+. |+..+|++++.++.|..|++|+..+.+++||.++.+.. ..+.||+..|.++..+ +
T Consensus 158 --~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----------mkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 158 --FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----------MKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred --ccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----------eeeeccccceEEEEEcCCC
Confidence 0112222333 89999999999999999999999999999999987652 4788999999999998 7
Q ss_pred CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 319 ~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..+++++.||+|++||+ ..+++.++..|.. .||++..+|+-..+++|+.||.|..=|++.
T Consensus 226 t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 89999999999999999 7889999999998 699999999999999999999998888754
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-22 Score=187.17 Aligned_cols=276 Identities=17% Similarity=0.263 Sum_probs=199.2
Q ss_pred EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEE
Q 003208 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (839)
Q Consensus 195 ~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 274 (839)
.|++|+....|.-+++.-.. .. ..+. ...+..++..+..|.++|++++. ++++++||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~---~~------~~~s------------~~~~l~~lF~~~aH~~sitavAV--s~~~~aSG 59 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP---KG------CTDS------------VKPTLKPLFAFSAHAGSITALAV--SGPYVASG 59 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc---cc------cccc------------cceeeeccccccccccceeEEEe--cceeEecc
Confidence 57888888888888876111 00 0000 00134557778899999999998 58999999
Q ss_pred eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC----CEEEEEeCCCeEEEEcC-CCceEEEeecccCC
Q 003208 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (839)
Q Consensus 275 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~ 349 (839)
|.|-+|+|||++.... . -.+..|.+.|+++.|.+ +.|++|+.||.|.+|+. .-.++..++.|.++
T Consensus 60 ssDetI~IYDm~k~~q-----l-----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQ-----L-----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCCcEEEEeccchhh-----h-----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 9999999999998755 2 27788999999999983 37999999999999999 77899999999995
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEec-CCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 428 (839)
|+.++++|.+++-++.+.|+.+++|++ +++.. +...+. ...+.+.|+
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a------------------~v~~L~-------------~~at~v~w~ 177 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA------------------FVLNLK-------------NKATLVSWS 177 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCccc------------------eeeccC-------------CcceeeEEc
Confidence 999999999999999999999999998 33211 111111 124558899
Q ss_pred cCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC
Q 003208 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (839)
Q Consensus 429 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~ 508 (839)
|.|..++......|-.|.+-+..... .+ .....+.|+-+ ..+..+++|..|+.|.+||.+...
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~--~i---~~~~r~l~~~~---------l~~~~L~vG~d~~~i~~~D~ds~~--- 240 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFR--EI---ENPKRILCATF---------LDGSELLVGGDNEWISLKDTDSDT--- 240 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhh--hh---hccccceeeee---------cCCceEEEecCCceEEEeccCCCc---
Confidence 98875555555555444433321111 11 11122333333 234789999999999999987632
Q ss_pred cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCC
Q 003208 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (839)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~ 556 (839)
.......++.++.+++....+++.+|++++.||.|++||++...
T Consensus 241 ----~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 241 ----PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ----cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 12233356677777766677889999999999999999998653
No 100
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=9.7e-22 Score=198.43 Aligned_cols=225 Identities=17% Similarity=0.258 Sum_probs=161.1
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce--E---
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--I--- 170 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~--~--- 170 (839)
++.+-|.-++.... +-+.+..+.+|.+.|+++.|+|+ ...+||+|+.|..|+||.+..+.. +
T Consensus 54 G~~lgvlPl~~~Gr-----------~~r~i~~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~LSap 120 (1012)
T KOG1445|consen 54 GGKLGVLPLTAKGR-----------RTRDIGILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKLSAP 120 (1012)
T ss_pred CceEEEEeccccCc-----------cccccceeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCcccccCCc
Confidence 35777777764321 13456778899999999999995 667899999999999999974322 1
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
....++..-.+-++.||.. .|+ ++++ +.-|.+++||+. +++.+.
T Consensus 121 e~~~g~~~~~vE~l~fHpT-aDg-il~s-~a~g~v~i~D~s---------------------------------tqk~~~ 164 (1012)
T KOG1445|consen 121 EIDVGGGNVIVECLRFHPT-ADG-ILAS-GAHGSVYITDIS---------------------------------TQKTAV 164 (1012)
T ss_pred ceeecCCceEEEEeecccC-cCc-eEEe-ccCceEEEEEcc---------------------------------cCceee
Confidence 1122344445556666533 233 4444 456999999998 888899
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc-eEEeEECCC--EEEEEeCC
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLTDS--FIITAGED 327 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~--~l~s~~~d 327 (839)
.+.+|.+.|.+..|+.||..|++.+.|+.|+|||.+.... +++ ...+|.+. =..+.|.|+ .|++.+.+
T Consensus 165 el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~-------piQ--~te~H~~~rdsRv~w~Gn~~rlisTGF~ 235 (1012)
T KOG1445|consen 165 ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME-------PIQ--TTEGHGGMRDSRVLWAGNWERLISTGFT 235 (1012)
T ss_pred cccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC-------ccc--cccccccchhheeeeccchhhhhhcccc
Confidence 9999999999999999999999999999999999987533 222 44677553 234677765 77777766
Q ss_pred ----CeEEEEcC--CCceEEEeecccCCceEEEEEccCCCEEEEEe-CCCcEEEEecC
Q 003208 328 ----CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (839)
Q Consensus 328 ----g~i~vw~~--~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~-~dg~i~iw~~~ 378 (839)
..|++||. =+..++++.-....+|.--.|+||.++|+-+| .+.++..+.+.
T Consensus 236 ~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 236 TKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred hhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 56899998 35566665544443566667899987665555 47778877773
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-22 Score=188.60 Aligned_cols=270 Identities=18% Similarity=0.170 Sum_probs=207.1
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
...|+.|.|+ |. ++.||++.-||++++||....++...++. ..++.+.+|. ++. ..++.+-|
T Consensus 13 ~d~IS~v~f~--~~---~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~-------d~~----~~~~G~~d 74 (323)
T KOG1036|consen 13 EDGISSVKFS--PS---SSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFA-------DES----TIVTGGLD 74 (323)
T ss_pred hhceeeEEEc--Cc---CCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeecc-------CCc----eEEEeccC
Confidence 4669999999 87 35566666699999999988766666663 4479999998 553 55666669
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
+.|+.+|+.++. ...+..|..+|.|+.+++ ....+++|+.|++|++||.+.......+...
T Consensus 75 g~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 75 GQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSY---EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred ceEEEEEecCCc----------------ceeeccCCCceEEEEeec---cCCeEEEcccCccEEEEeccccccccccccC
Confidence 999999998643 344567999999999998 8888999999999999999876655555444
Q ss_pred CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC
Q 003208 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (839)
Q Consensus 177 ~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (839)
. .+|++. ..+..|++|+.+..|.+||+++-+. .....-..-+
T Consensus 136 k--kVy~~~-----v~g~~LvVg~~~r~v~iyDLRn~~~-------------------------------~~q~reS~lk 177 (323)
T KOG1036|consen 136 K--KVYCMD-----VSGNRLVVGTSDRKVLIYDLRNLDE-------------------------------PFQRRESSLK 177 (323)
T ss_pred c--eEEEEe-----ccCCEEEEeecCceEEEEEcccccc-------------------------------hhhhccccce
Confidence 4 577775 4678999999999999999982110 0011122345
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc---------cceEEeEECC--CEEEEEe
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFIITAG 325 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~--~~l~s~~ 325 (839)
-.+.||++.|++.-++++|-||.|.+=.++.... .+..+ +.+..|. -+|.+++|++ +.|+||+
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----~~skk-yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----AQSKK-YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchH-----Hhhhc-eeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 6789999999888899999999998866665422 11111 3445453 2688999995 7899999
Q ss_pred CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeC
Q 003208 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 326 ~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
.||.|.+||+ ..+.+..+..... .|.+++|+.+|..||+++.
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEec
Confidence 9999999999 7777888877655 5999999999999999874
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=221.83 Aligned_cols=303 Identities=11% Similarity=0.114 Sum_probs=205.7
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
.|.+.|.|+.|| +| |+|||+|+ |+.|+||.+...+.. .+. .+ .-.+|-+... ..+. ..-...
T Consensus 265 ah~gaIw~mKFS--~D----GKyLAsaGeD~virVWkVie~e~~-~~~--~~-~~~~~~~~~~-----~~s~--~~p~~s 327 (712)
T KOG0283|consen 265 AHKGAIWAMKFS--HD----GKYLASAGEDGVIRVWKVIESERM-RVA--EG-DSSCMYFEYN-----ANSQ--IEPSTS 327 (712)
T ss_pred ccCCcEEEEEeC--CC----CceeeecCCCceEEEEEEeccchh-ccc--cc-ccchhhhhhh-----hccc--cCcccc
Confidence 489999999999 99 99999988 999999998764431 111 11 0111111100 0000 000000
Q ss_pred EcCcEE--EEEEeeccCCCCCCCCCc--cccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 94 FGEKRV--KLFELNFELSPNSQYQPE--TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 94 ~~~~~i--~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
.. ..+ +.-............-|+ ..+..+++..+.||.+.|+++.|+. .++|++++-|.+||+|++...++
T Consensus 328 ~~-~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----n~fLLSSSMDKTVRLWh~~~~~C 402 (712)
T KOG0283|consen 328 SE-EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----NNFLLSSSMDKTVRLWHPGRKEC 402 (712)
T ss_pred cc-ccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc----CCeeEeccccccEEeecCCCcce
Confidence 00 000 000000000000001111 1123577889999999999999995 56788999999999999999999
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
+..+.... .+.+++|+ +.|..++++|+-||.|+||++. ..+.+
T Consensus 403 L~~F~Hnd--fVTcVaFn--PvDDryFiSGSLD~KvRiWsI~---------------------------------d~~Vv 445 (712)
T KOG0283|consen 403 LKVFSHND--FVTCVAFN--PVDDRYFISGSLDGKVRLWSIS---------------------------------DKKVV 445 (712)
T ss_pred eeEEecCC--eeEEEEec--ccCCCcEeecccccceEEeecC---------------------------------cCeeE
Confidence 99886443 46777774 5678999999999999999997 33333
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeC
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE 326 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~ 326 (839)
.- ..-..-|++++|.|+|+..+.|+.+|.+++|+....+......+..... ....|. .|+.++|. +..++..+.
T Consensus 446 ~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~-Kk~~~~-rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 446 DW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK-KKKQGK-RITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred ee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC-ccccCc-eeeeeEecCCCCCeEEEecC
Confidence 32 2334889999999999999999999999999998866521111110000 111233 89999998 356888899
Q ss_pred CCeEEEEcC-CCceEEEeecccCC-ceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 DCTCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 dg~i~vw~~-~~~~~~~~~~h~~~-~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
|..|||+|. +..++.+++++... .-....|+.||++|++++.|..|++|+.+.
T Consensus 523 DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 523 DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 999999999 77888888876541 224567899999999999999999999854
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.2e-23 Score=188.45 Aligned_cols=280 Identities=18% Similarity=0.239 Sum_probs=206.2
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCe
Q 003208 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (839)
Q Consensus 253 ~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 329 (839)
...++.|.+|+||| ....++.+|.|++||+|++..... .. + .....|.++|.+++|+ +..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~--~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LV--P-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCc-----cc--c-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 34678999999999 445666899999999999988532 11 1 2667899999999999 789999999999
Q ss_pred EEEEcCCCceEEEeecccCCceEEEEEccCCC--EEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCC
Q 003208 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (839)
Q Consensus 330 i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (839)
+++||+....+..+..|.+ +|.++.|-+... .|+||+.|.+|+.||++.. .++..+.+|+
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-----------------~pv~t~~LPe 157 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-----------------NPVATLQLPE 157 (347)
T ss_pred eEEEEccCCCeeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCC-----------------Ceeeeeeccc
Confidence 9999994447778888998 799999976554 8999999999999999752 3344555554
Q ss_pred CccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEE
Q 003208 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (839)
Q Consensus 408 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 487 (839)
.+.++.... ..+++++.+..|..+++.+..... +....+-...+.|+++..+. ...
T Consensus 158 -------------RvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~--------~~~ 213 (347)
T KOG0647|consen 158 -------------RVYAADVLY-PMAVVATAERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDK--------DGF 213 (347)
T ss_pred -------------eeeehhccC-ceeEEEecCCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecC--------Cce
Confidence 244443332 367788888899888886654422 22233345667888887664 556
Q ss_pred EEeCCCccEEEEEEcCCCCCCcceeeeEeeccce---eEEeeE-EEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccC
Q 003208 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE---RQLLGT-YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYES 563 (839)
Q Consensus 488 ~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 563 (839)
++|+.+|++.+..++.... +..+.+++++... ..+..+ -.+|.|.-..|+|++.||++.+||-+.....+
T Consensus 214 alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk---- 287 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK---- 287 (347)
T ss_pred EeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh----
Confidence 9999999999999987543 4556677776422 112221 24688888899999999999999987543211
Q ss_pred CccceeeeeeccccccCceEEEEeeecCCCEEEEec
Q 003208 564 SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (839)
Q Consensus 564 ~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs 599 (839)
.+ ..|..+|+|.+|+.+|.++|-+.
T Consensus 288 ----------~s-~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 288 ----------TS-ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ----------cc-CcCCCccceeEecCCCCEEEEEe
Confidence 11 25788999999999998887653
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=193.44 Aligned_cols=287 Identities=13% Similarity=0.250 Sum_probs=213.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC------------C------eeeeEEeeecCceEEeEEeccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------------G------TLIRPFQVFHGIRLHGISCNFI 76 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~------------~------~~~~~~~~~~~~~v~~i~~~~~ 76 (839)
|.+++.|-+|+ +| |.++++|+ |..|+|.|++. | -.++++.-|.. .|+++.|+
T Consensus 111 HK~~cR~aafs--~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH-- 181 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH-- 181 (430)
T ss_pred cccceeeeeeC--CC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec--
Confidence 88999999999 99 99999999 99999999861 1 23556655544 69999999
Q ss_pred ccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC
Q 003208 77 NCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (839)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d 156 (839)
|... .++..+.|++|+++|+..... .+....+ .-..+|.++.|+| .|++|+.|...
T Consensus 182 -----Pre~---ILiS~srD~tvKlFDfsK~sa------------KrA~K~~-qd~~~vrsiSfHP---sGefllvgTdH 237 (430)
T KOG0640|consen 182 -----PRET---ILISGSRDNTVKLFDFSKTSA------------KRAFKVF-QDTEPVRSISFHP---SGEFLLVGTDH 237 (430)
T ss_pred -----chhh---eEEeccCCCeEEEEecccHHH------------HHHHHHh-hccceeeeEeecC---CCceEEEecCC
Confidence 5541 455556699999999986431 1111112 2346799999999 99999999999
Q ss_pred CcEEEEecCCCceEEEEe--cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 157 NSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 157 ~~i~vwd~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
.++++||+.+.++..... ......+.++.+ ++.+.+-++|+.||.|++||--
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGV----------------------- 291 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRY---SSTGSLYVTASKDGAIKLWDGV----------------------- 291 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEe---cCCccEEEEeccCCcEEeeccc-----------------------
Confidence 999999999988876544 222344556665 6889999999999999999977
Q ss_pred eeeEeecccccceeeEEEe-cCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 235 KCFKLQDQQHTAVNLFRLV-GHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
..+++..+. +|.+ .|.+..|..+++++++.+.|..+++|.+.++.. ++...-.-..+...--+
T Consensus 292 ----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~rt 356 (430)
T KOG0640|consen 292 ----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHRT 356 (430)
T ss_pred ----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhhh
Confidence 667776664 5654 799999999999999999999999999999876 33221111111111223
Q ss_pred EeEEC--CCEEEEEeC-CCeEEEEcC-CCceEE-EeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 313 DCCLT--DSFIITAGE-DCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 313 ~~~~~--~~~l~s~~~-dg~i~vw~~-~~~~~~-~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
...|+ ..+++.-.+ .+.++-||. ++..+. .-.+|++ ++..+.-+|.+..++||+.|-.+++|--
T Consensus 357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 34455 456665543 477999999 443333 3347888 7999999999999999999999999964
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.3e-23 Score=199.50 Aligned_cols=287 Identities=13% Similarity=0.204 Sum_probs=217.7
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCC-ccc-cceeeeEec-cCCCcceEEEEE
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQP-ETC-VNLSLVQSL-PRLSHWVFDVCF 140 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~-~~~~~~~~~-~~h~~~I~~~~~ 140 (839)
|..+|.+++++ ||++ ..+.++.+++|.=|+..++........- +.. ..+.+...- ++|...|.++++
T Consensus 141 H~~s~~~vals-------~d~~---~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALS-------PDDK---RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEee-------cccc---ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 34479999999 8875 7888888999999998765522111100 000 001111111 489999999999
Q ss_pred eeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCC
Q 003208 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~ 220 (839)
+| ++.+||+|+.|+.|.||+..+.+.+..+.++.. .+.++.| -.....+++++.|..|++|+++
T Consensus 211 S~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-~V~~L~f---r~gt~~lys~s~Drsvkvw~~~--------- 274 (479)
T KOG0299|consen 211 SS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-AVSSLAF---RKGTSELYSASADRSVKVWSID--------- 274 (479)
T ss_pred cC---CCcEEEecCCCceEEEecCcccchhhccccccc-ceeeeee---ecCccceeeeecCCceEEEehh---------
Confidence 99 999999999999999999999999888766654 4566666 2445689999999999999998
Q ss_pred CCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeee
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
....+..+.||.+.|.+|....-++.+-+|+.|+++++|++....+
T Consensus 275 ------------------------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq---------- 320 (479)
T KOG0299|consen 275 ------------------------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ---------- 320 (479)
T ss_pred ------------------------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce----------
Confidence 6677778899999999999888777777788999999999966554
Q ss_pred ceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccC-----------CceEEEEEccCCCEEEEEe
Q 003208 301 SSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-----------RGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 301 ~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~-----------~~i~~~~~~~~~~~l~t~~ 367 (839)
..+.+|.+.+-|++|- ...+++|+.||.|.+|++ ..+++.+.+..++ .-|++++..|...++++|+
T Consensus 321 -lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 321 -LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred -eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 4888999999999997 789999999999999999 6666665543211 1378899999999999999
Q ss_pred CCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe-EEEEe
Q 003208 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIAT 437 (839)
Q Consensus 368 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 437 (839)
.+|.|++|.+....-+ -..++.+. -.+.|++++|+++|. ++++.
T Consensus 400 ~~G~vrLW~i~~g~r~-------------i~~l~~ls-------------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRA-------------INLLYSLS-------------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CCCceEEEEecCCccc-------------cceeeecc-------------cccEEEEEEEccCCCEEEEec
Confidence 9999999998542110 01111221 236799999999997 44443
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4e-23 Score=190.98 Aligned_cols=237 Identities=18% Similarity=0.231 Sum_probs=166.4
Q ss_pred EEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCc
Q 003208 341 KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (839)
Q Consensus 341 ~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (839)
..+..|.+ ++.+.+|++||.+++||+.|..|++.|.+.-..+... .++..-........++.+..|.+
T Consensus 106 ~ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-----------~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 106 KYLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-----------KEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred EEEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-----------hhhccCCcccCCceEeehhhccC
Confidence 44556877 7999999999999999999999999998642221100 00100000111234566777888
Q ss_pred ceEEEEEecCCeEEEE-eccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEE
Q 003208 421 YVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (839)
Q Consensus 421 ~v~~~~~~~~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~ 499 (839)
.|+++.|.|...++++ +.++.+.++++......+--++ ..+..++.++.++|++ .++++|...-.+++|
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~--~qd~~~vrsiSfHPsG--------efllvgTdHp~~rlY 243 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV--FQDTEPVRSISFHPSG--------EFLLVGTDHPTLRLY 243 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH--hhccceeeeEeecCCC--------ceEEEecCCCceeEE
Confidence 9999999998766655 5677777777655433221112 2334567777776665 777777777778888
Q ss_pred EEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeecccccc
Q 003208 500 RVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCF 579 (839)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 579 (839)
|+++.+ | ++++.. ...|
T Consensus 244 dv~T~Q------------------------c-------fvsanP--------------------------------d~qh 260 (430)
T KOG0640|consen 244 DVNTYQ------------------------C-------FVSANP--------------------------------DDQH 260 (430)
T ss_pred ecccee------------------------E-------eeecCc--------------------------------cccc
Confidence 775422 0 111111 1248
Q ss_pred CceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeec
Q 003208 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTG 659 (839)
Q Consensus 580 ~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~ 659 (839)
++.|+++.+|+.+++-++||.||.|+|||--.+ ..+.++..+|+...|++..|. .+++|++|.|
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-------------rCv~t~~~AH~gsevcSa~Ft---kn~kyiLsSG 324 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-------------RCVRTIGNAHGGSEVCSAVFT---KNGKYILSSG 324 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccH-------------HHHHHHHhhcCCceeeeEEEc---cCCeEEeecC
Confidence 899999999999999999999999999986532 134556679998999999999 8999999999
Q ss_pred CcCcEEEEEEecCCceeeE
Q 003208 660 GDGCICYLEYDKDRESLEF 678 (839)
Q Consensus 660 ~Dg~i~iw~~~~~~~~~~~ 678 (839)
.|..+++|++.++.....+
T Consensus 325 ~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred CcceeeeeeecCCceEEEE
Confidence 9999999999987543333
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.7e-23 Score=189.40 Aligned_cols=236 Identities=17% Similarity=0.255 Sum_probs=188.8
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
.|.++|||||.+ ++|+++|+ |.+|+|||..+...+..+-.|.+ .|+++.|.+.. ..+ .+|++
T Consensus 41 aH~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~~~~----S~s----hLlS~ 103 (362)
T KOG0294|consen 41 AHAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFYPPL----SKS----HLLSG 103 (362)
T ss_pred ccccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEecCCc----chh----heeee
Confidence 389999999999 89999999 99999999999888888887755 79999998321 111 68888
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
+.||.|.+|+... ++++..+++|.+.|+.++++| .+++.++.+.|+.++.||+-+++....+
T Consensus 104 sdDG~i~iw~~~~---------------W~~~~slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 104 SDDGHIIIWRVGS---------------WELLKSLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred cCCCcEEEEEcCC---------------eEEeeeecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceee
Confidence 8899999999875 899999999999999999999 9998889999999999999998877666
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
.-...... +.| ++.|.+++.+.. ..|-+|.+. .......+.
T Consensus 166 ~L~~~at~--v~w---~~~Gd~F~v~~~-~~i~i~q~d---------------------------------~A~v~~~i~ 206 (362)
T KOG0294|consen 166 NLKNKATL--VSW---SPQGDHFVVSGR-NKIDIYQLD---------------------------------NASVFREIE 206 (362)
T ss_pred ccCCccee--eEE---cCCCCEEEEEec-cEEEEEecc---------------------------------cHhHhhhhh
Confidence 54333222 333 578887777665 567788877 333222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC----CCEEEEEeCCCe
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCT 329 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~ 329 (839)
....+.++.|. ++..|++|++|+.|++||-+..... ..+.+|..+|-++.+- +.+|+|++.||.
T Consensus 207 -~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~----------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 207 -NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL----------TEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred -ccccceeeeec-CCceEEEecCCceEEEeccCCCccc----------eeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 12457777775 5578999999999999999875542 4788999999999965 369999999999
Q ss_pred EEEEcCC
Q 003208 330 CRVWGSD 336 (839)
Q Consensus 330 i~vw~~~ 336 (839)
|++||++
T Consensus 275 I~vWd~~ 281 (362)
T KOG0294|consen 275 IKVWDID 281 (362)
T ss_pred EEEEEcc
Confidence 9999994
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7e-23 Score=200.01 Aligned_cols=309 Identities=16% Similarity=0.220 Sum_probs=221.7
Q ss_pred eEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCe
Q 003208 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
...+..|.-.|++++++| ++.++++++.+++|.-|++.+++....+-. ... +.
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~----------------~~e-v~------- 187 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIE----------------RDE-VL------- 187 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccc----------------cch-hh-------
Confidence 456778999999999999 999999999999999999988765422210 000 00
Q ss_pred EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003208 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 205 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd 284 (839)
. .+.. ..++- . ++|...|.+++.++|+++|++|+.|+.|.||+
T Consensus 188 ------k-~~~~----------------------------~~k~~-r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 188 ------K-SHGN----------------------------PLKES-R-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWD 230 (479)
T ss_pred ------h-hccC----------------------------CCCcc-c-ccccceeEEEEEcCCCcEEEecCCCceEEEec
Confidence 0 0000 11111 1 48999999999999999999999999999999
Q ss_pred cccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
.++.+. ++ .+.+|...|.+++|- ...+++++.|+++++|++ ....+.++.+|+. .|..|....-++
T Consensus 231 ~~t~eh-----v~-----~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR 299 (479)
T KOG0299|consen 231 CDTLEH-----VK-----VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRER 299 (479)
T ss_pred Ccccch-----hh-----cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccc
Confidence 999766 33 678999999999998 688999999999999999 6677888999998 799998887777
Q ss_pred EEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccce
Q 003208 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 441 (839)
.+-+|+.|.++++|++...... +| .++.+.+.|++|..+..++.++.+|.
T Consensus 300 ~vtVGgrDrT~rlwKi~eesql----------------if--------------rg~~~sidcv~~In~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPEESQL----------------IF--------------RGGEGSIDCVAFINDEHFVSGSDNGS 349 (479)
T ss_pred eEEeccccceeEEEecccccee----------------ee--------------eCCCCCeeeEEEecccceeeccCCce
Confidence 7777889999999999432111 11 12335799999999999999999999
Q ss_pred EEEEEecCCCCceeEEEeeecCCC--------ceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceee
Q 003208 442 LYHTKLCDMDSVNWNKILQVSEGM--------PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFT 513 (839)
Q Consensus 442 i~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~ 513 (839)
|.+|.+.......-.++.++-... -+.++++.+. .+++++|+.+|.|++|.+..+-..- .
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~--------sdL~asGS~~G~vrLW~i~~g~r~i----~ 417 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG--------SDLLASGSWSGCVRLWKIEDGLRAI----N 417 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeeeEeccc--------CceEEecCCCCceEEEEecCCcccc----c
Confidence 998887665443222222222111 3555665444 4899999999999999998763211 1
Q ss_pred eEeeccceeEEeeEEEeecCCCeEEEEe-CCCCcEEEeee
Q 003208 514 FTWSAGIERQLLGTYWCKSLGHRFIFTA-DPKGRLKLWQL 552 (839)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~~wd~ 552 (839)
+.......+-+.+ .+|+++|+.+++| +...++=-|-.
T Consensus 418 ~l~~ls~~GfVNs--l~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 418 LLYSLSLVGFVNS--LAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred eeeecccccEEEE--EEEccCCCEEEEecccccccceeeE
Confidence 1111112222333 5688899976655 44444444433
No 109
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=1e-21 Score=211.00 Aligned_cols=271 Identities=8% Similarity=0.052 Sum_probs=191.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeee----------e---EEeeecCceEEeEEecccccccCC
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI----------R---PFQVFHGIRLHGISCNFINCTEGS 82 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~----------~---~~~~~~~~~v~~i~~~~~~~~~~~ 82 (839)
+...|....++ +| +..++++..+.....|+...+..+ . .+.+|. ..|.+++|+ |
T Consensus 19 ~~~~i~~~~~~--~d---~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-~~V~~v~fs-------P 85 (493)
T PTZ00421 19 HFLNVTPSTAL--WD---CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-GPIIDVAFN-------P 85 (493)
T ss_pred ceecccccccc--CC---CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-CCEEEEEEc-------C
Confidence 55666666666 66 233443333555566665443222 1 244444 479999999 6
Q ss_pred -CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC-cEEEEEeCCCcEE
Q 003208 83 -VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIR 160 (839)
Q Consensus 83 -~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~las~~~d~~i~ 160 (839)
+++ .+++++.|++|+||++........ ...++..+.+|...|.+++|+| ++ ++|++|+.|++|+
T Consensus 86 ~d~~---~LaSgS~DgtIkIWdi~~~~~~~~--------~~~~l~~L~gH~~~V~~l~f~P---~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 86 FDPQ---KLFTASEDGTIMGWGIPEEGLTQN--------ISDPIVHLQGHTKKVGIVSFHP---SAMNVLASAGADMVVN 151 (493)
T ss_pred CCCC---EEEEEeCCCEEEEEecCCCccccc--------cCcceEEecCCCCcEEEEEeCc---CCCCEEEEEeCCCEEE
Confidence 542 566667799999999975321000 1245678899999999999999 64 6999999999999
Q ss_pred EEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEee
Q 003208 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (839)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (839)
|||+.+++.+..+..+.. .+.++.+ ++++.+|++++.|+.|++||++
T Consensus 152 IWDl~tg~~~~~l~~h~~-~V~sla~---spdG~lLatgs~Dg~IrIwD~r----------------------------- 198 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSD-QITSLEW---NLDGSLLCTTSKDKKLNIIDPR----------------------------- 198 (493)
T ss_pred EEECCCCeEEEEEcCCCC-ceEEEEE---ECCCCEEEEecCCCEEEEEECC-----------------------------
Confidence 999999988887765543 3667776 5789999999999999999998
Q ss_pred cccccceeeEEEecCCCC-eEEEEEcCCCCEEEEEe----CCCcEEEEEcccCccCCCCCceeeeceEee-ccccceEEe
Q 003208 241 DQQHTAVNLFRLVGHEGS-IFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDC 314 (839)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~ 314 (839)
.++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.... .. ... .+...+...
T Consensus 199 ----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p----~~-----~~~~d~~~~~~~~ 265 (493)
T PTZ00421 199 ----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP----YS-----TVDLDQSSALFIP 265 (493)
T ss_pred ----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc----ee-----EeccCCCCceEEE
Confidence 66777788889865 45678999888887765 4799999999875431 11 122 223345555
Q ss_pred EEC--CCEEEEEe-CCCeEEEEcC-CCceEEEeecccCCceEEEEEccC
Q 003208 315 CLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 315 ~~~--~~~l~s~~-~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~ 359 (839)
.|+ ++++++++ .|+.|++||+ +++.+.........++..++|.|.
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 666 57788877 5999999999 677666554444335777888774
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.5e-22 Score=217.03 Aligned_cols=295 Identities=14% Similarity=0.171 Sum_probs=224.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee---CCeeEEEECCC------------CeeeeEEeeecCceEEeEEeccccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEA------------GTLIRPFQVFHGIRLHGISCNFINCTE 80 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~---~~~v~iwd~~~------------~~~~~~~~~~~~~~v~~i~~~~~~~~~ 80 (839)
+...|.+++.+ || +..+++|. |+.++||+.+. .+.+.+...|. ..|.|+.|+
T Consensus 12 ~~~~IfSIdv~--pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~-~sv~CVR~S------ 78 (942)
T KOG0973|consen 12 NEKSIFSIDVH--PD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD-GSVNCVRFS------ 78 (942)
T ss_pred CCeeEEEEEec--CC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc-CceeEEEEC------
Confidence 44569999999 99 78888866 78888999642 12334444444 479999999
Q ss_pred CCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCC----ccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC
Q 003208 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQP----ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 81 ~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
||| .+||.++ |+.|.||.... ...+..|.- ...-.++.+..+.+|...|.+++|+| ++.+||+++.
T Consensus 79 -~dG----~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~ 149 (942)
T KOG0973|consen 79 -PDG----SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSL 149 (942)
T ss_pred -CCC----CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecc
Confidence 999 6666655 79999999884 111222211 11124788999999999999999999 9999999999
Q ss_pred CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 156 d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
|++|.|||..+.+.+..+.+|..- +-.+.| +|-|.++|+-+.|++|++|+..
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~-VKGvs~---DP~Gky~ASqsdDrtikvwrt~------------------------ 201 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSL-VKGVSW---DPIGKYFASQSDDRTLKVWRTS------------------------ 201 (942)
T ss_pred cceEEEEccccceeeeeeeccccc-ccceEE---CCccCeeeeecCCceEEEEEcc------------------------
Confidence 999999999999888888877642 223333 6899999999999999999966
Q ss_pred eeEeecccccceeeEEEecC------CCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 236 CFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
.....+.+.++ +.....+.|+|||++|++.-. -.++.|.+-.+.+.. ..+.
T Consensus 202 ---------dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~----------~~Lv 262 (942)
T KOG0973|consen 202 ---------DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD----------KDLV 262 (942)
T ss_pred ---------cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee----------eeee
Confidence 22223333222 345788999999999998632 235666666554431 3788
Q ss_pred ccccceEEeEECC-------C------------EEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEE
Q 003208 306 GHNARVWDCCLTD-------S------------FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (839)
Q Consensus 306 ~h~~~v~~~~~~~-------~------------~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t 365 (839)
||.+++.+++|+| . .+++|+.|++|.||.. ..+++.....-....|..++|+|||..|+.
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 9999999999982 2 6789999999999998 666766665545557999999999999999
Q ss_pred EeCCCcEEEEecCC
Q 003208 366 AGFDSAIKVHQFQA 379 (839)
Q Consensus 366 ~~~dg~i~iw~~~~ 379 (839)
++.||+|.++.++.
T Consensus 343 cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 343 CSLDGTVALIHFEE 356 (942)
T ss_pred EecCCeEEEEEcch
Confidence 99999999999854
No 111
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-22 Score=205.84 Aligned_cols=264 Identities=18% Similarity=0.270 Sum_probs=212.2
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
..++++-+..|.+|+-..+. ...+..+ +.+.|+++.|++ +|.+||+|..+|.|.|||..+.+
T Consensus 189 n~laValg~~vylW~~~s~~-------------v~~l~~~--~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS-------------VTELCSF--GEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred CeEEEEecceEEEEecCCCc-------------eEEeEec--CCCceEEEEECC---CCCEEEEeecCCeEEEEehhhcc
Confidence 58888889999999987644 2333333 378999999999 99999999999999999999999
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
.+..+..++...+-++++ +...+.+|+.++.|..+|++ ..+.
T Consensus 251 ~~~~~~~~h~~rvg~laW-----~~~~lssGsr~~~I~~~dvR---------------------------------~~~~ 292 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAW-----NSSVLSSGSRDGKILNHDVR---------------------------------ISQH 292 (484)
T ss_pred ccccccCCcCceeEEEec-----cCceEEEecCCCcEEEEEEe---------------------------------cchh
Confidence 988888744444555554 47789999999999999998 3322
Q ss_pred eE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEE
Q 003208 249 LF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA 324 (839)
Q Consensus 249 ~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~ 324 (839)
.. .+.+|...|..++|++|+.++++|+.|+.+.|||...... . ..+..|...|.+++|+ .+.|++|
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-----~-----~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-----K-----FTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-----c-----EEEeccceeeeEeeeCCCccCceEEc
Confidence 22 3889999999999999999999999999999999965544 1 4888999999999999 5889987
Q ss_pred e--CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEE-e-CCCcEEEEecCC-cCccCcCCCCcccccCCCc
Q 003208 325 G--EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA-G-FDSAIKVHQFQA-FLPGSLESHPEAKEFNGRT 398 (839)
Q Consensus 325 ~--~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~-~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~ 398 (839)
+ .|+.|++||. .+..+..+.... .|.+|.|++..+-|+++ | .++.|.||+... ..+
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---------------- 424 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---------------- 424 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccccCC--ceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee----------------
Confidence 5 6899999999 888887776554 59999999988645443 3 478999999844 222
Q ss_pred ceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEecCC
Q 003208 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDM 450 (839)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~ 450 (839)
..+.+|...|..++++||+ .+++++.|..+.+|++++.
T Consensus 425 --------------~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 --------------AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --------------eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 2334566779999999997 5666678899988888775
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.7e-23 Score=184.51 Aligned_cols=251 Identities=20% Similarity=0.284 Sum_probs=188.7
Q ss_pred CceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc
Q 003208 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (839)
Q Consensus 65 ~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (839)
...||.+... -.|+ ++.++++|++|+|+...... ..+++.+|.||+++|..++|..+
T Consensus 11 ~D~IHda~lD-------yygk---rlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wahP- 67 (299)
T KOG1332|consen 11 EDMIHDAQLD-------YYGK---RLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWAHP- 67 (299)
T ss_pred hhhhhHhhhh-------hhcc---eeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeeccc-
Confidence 3358877766 3443 67777889999999998643 14788999999999999999541
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceEEEEe-cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCC
Q 003208 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 145 ~~~~~las~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
.-|.+||+++.||.|.||.-++++-.+... ......+.++++. ....+..|++++.||.|.|.+.+...
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g--------- 137 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSG--------- 137 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCC---------
Confidence 478899999999999999998874332221 1122334455543 34568899999999999999988210
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEEcccCc
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---G-----------SKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~-----------~~l~s~s~d~~i~iwd~~~~~ 289 (839)
..........|+-.|++++|.|. | ++|++|+.|..|+||+.....
T Consensus 138 ---------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~ 196 (299)
T KOG1332|consen 138 ---------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS 196 (299)
T ss_pred ---------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence 01112234679999999999985 4 579999999999999998864
Q ss_pred cCCCCCceeeeceEeeccccceEEeEECC------CEEEEEeCCCeEEEEcCCCc----eEEEeecccCCceEEEEEccC
Q 003208 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDGK----QLKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vw~~~~~----~~~~~~~h~~~~i~~~~~~~~ 359 (839)
-. .+ .++.+|...|..++|.| .+|+++++||++.||..+.+ ....+..... .++.+.|+..
T Consensus 197 w~----~e----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~s 267 (299)
T KOG1332|consen 197 WK----LE----RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLS 267 (299)
T ss_pred hh----hh----hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEecc
Confidence 31 11 26889999999999984 58999999999999987311 1222333444 6999999999
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 003208 360 SSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 360 ~~~l~t~~~dg~i~iw~~~ 378 (839)
|++|+.++.|+.|.+|.-.
T Consensus 268 Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccEEEEecCCcEEEEEEeC
Confidence 9999999999999999763
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.1e-22 Score=184.73 Aligned_cols=324 Identities=15% Similarity=0.254 Sum_probs=234.6
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
.++++.+.||.+.|+.++... ....+.+++.|.+.+||.++++.++.++.++.++ +.++.| .+.+.++++++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-VNsikf---h~s~~L~lTaSG 210 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGS-VNSIKF---HNSGLLLLTASG 210 (481)
T ss_pred Eeehhhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccc-eeeEEe---ccccceEEEccC
Confidence 567788999999999999877 7779999999999999999999999999988765 567777 478899999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCcc-------CCCCCC-CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNH-------AHGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 273 (839)
|++-.||...-+=..|....+..-+ .++... .+...+. +...-..++..+.||.+.|.+..|-..|+.+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s-D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS-DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc-CCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence 9999999743222222221110000 010000 1111111 111124577889999999999999999999999
Q ss_pred EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC--CCceEEEeecccCC
Q 003208 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGR 349 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~ 349 (839)
++.|++..+||++++.. +. .+.||....+.+.-+ ..++++.+.|.+.++||+ .-..+..|.+|..
T Consensus 290 aSWDRTAnlwDVEtge~-----v~-----~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd- 358 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEV-----VN-----ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD- 358 (481)
T ss_pred eeccccceeeeeccCce-----ec-----cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-
Confidence 99999999999999876 33 788999999888777 478999999999999999 4567888999998
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC--cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEE
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 427 (839)
.|++..|..+. .+++|+.|.+|++||++. .++.++. ...+++.++.
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-------------------------------tdS~~NRvav 406 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-------------------------------TDSPANRVAV 406 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-------------------------------cCCccceeEe
Confidence 69999998764 589999999999999954 2222211 1235777888
Q ss_pred ecCCeEEEEec-cceEEEEEecCCCCceeEE-EeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcC
Q 003208 428 TSEDTLYIATN-HGYLYHTKLCDMDSVNWNK-ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (839)
Q Consensus 428 ~~~~~~~~~~~-~g~i~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~ 503 (839)
+....+++... +..+.++++......+... ..++| ..-+.|.++.... +- .-|++++-|..+.-|++..
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eeh-----p~-cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEH-----PA-CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccC-----cc-cccccccccceeeeeEecc
Confidence 87666666654 4456666665543333211 22233 4567777766553 22 4577888899999998854
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=7.6e-22 Score=191.01 Aligned_cols=280 Identities=13% Similarity=0.188 Sum_probs=215.8
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeec
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~ 212 (839)
..|+++...| ..+.+++|+.|..+.++|....+.+..+.++...+. ++.+ .++...+++++.|-.|++|...
T Consensus 220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~-~v~~---~~~~~~v~~aSad~~i~vws~~- 291 (506)
T KOG0289|consen 220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT-SVKF---HKDLDTVITASADEIIRVWSVP- 291 (506)
T ss_pred CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEE-EEEe---ccchhheeecCCcceEEeeccc-
Confidence 3578888888 677899999999999999999999999988876543 4444 4778899999999999999987
Q ss_pred cccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCC
Q 003208 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
..........|+.+|+.+..+|.|.||++++.|++..+.|++++.+
T Consensus 292 --------------------------------~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-- 337 (506)
T KOG0289|consen 292 --------------------------------LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-- 337 (506)
T ss_pred --------------------------------cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--
Confidence 3445556678999999999999999999999999999999999876
Q ss_pred CCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
+... ......-.+++.+|+ +..|.+|..|+.++|||+ ++..+..|.+|.+ +|..++|+.+|-+|+++..|
T Consensus 338 ---lt~v---s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 338 ---LTVV---SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADD 410 (506)
T ss_pred ---EEEE---eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecC
Confidence 2111 111223458899999 578889999999999999 7778999999999 79999999999999999999
Q ss_pred CcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe-ccceEEEEEe
Q 003208 370 SAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKL 447 (839)
Q Consensus 370 g~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~g~i~~~~~ 447 (839)
+.|++||++. ...+++. .++ ...+..+.|.+.|.+++.. ++=+|| +
T Consensus 411 ~~V~lwDLRKl~n~kt~~------------------l~~-----------~~~v~s~~fD~SGt~L~~~g~~l~Vy---~ 458 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQ------------------LDE-----------KKEVNSLSFDQSGTYLGIAGSDLQVY---I 458 (506)
T ss_pred CeEEEEEehhhcccceee------------------ccc-----------cccceeEEEcCCCCeEEeecceeEEE---E
Confidence 9999999965 2222221 111 1248899999988777665 233333 3
Q ss_pred cCCCCceeEEEeeecCC-CceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEE
Q 003208 448 CDMDSVNWNKILQVSEG-MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~ 501 (839)
.......|..+...+.. +...+..+.. ...++++++.|..++++.+
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg~--------~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGLSTGVRFGE--------HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred Eecccccceeeehhhhcccccceeeecc--------cceEEeeccchhheEEeec
Confidence 34445668777665533 2455555432 3478999999999888754
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6e-21 Score=178.54 Aligned_cols=292 Identities=14% Similarity=0.185 Sum_probs=209.1
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 324 (839)
++.+.+..-.+.|.++.|+++|..+++++.|-++++||...+.+ .+ ++..+...+..++|. ++.++.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----~~-----ti~skkyG~~~~~Fth~~~~~i~s 74 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----VK-----TINSKKYGVDLACFTHHSNTVIHS 74 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----ee-----EeecccccccEEEEecCCceEEEc
Confidence 34445555678999999999999999999999999999999876 33 555566667777776 5666666
Q ss_pred eC--CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceE
Q 003208 325 GE--DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (839)
Q Consensus 325 ~~--dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (839)
+. |.+||..++ +.+.++.+.+|.. .|.+++.+|-+..+++++.|++|++||++....+.+ .
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~---------------l 138 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL---------------L 138 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE---------------E
Confidence 55 899999999 8999999999998 699999999999999999999999999974221110 0
Q ss_pred EeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccc-eEEEEEecCCCCceeEEEeee-cCCCceEEeeecCCCCCC
Q 003208 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG-YLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKY 479 (839)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 479 (839)
.+ ..-...||.|+|.+++....+ .|.++++......-+....-. ....+...+.++++
T Consensus 139 ~~----------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d---- 198 (311)
T KOG1446|consen 139 NL----------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD---- 198 (311)
T ss_pred ec----------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC----
Confidence 00 113467899999887777655 777777765544333222222 22344555555544
Q ss_pred CCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcc
Q 003208 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSV 559 (839)
Q Consensus 480 ~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~ 559 (839)
++.++++...+.+++.|.-++.....+. .... ......-.+++||++++++|+.||+|++|+++++..
T Consensus 199 ----GK~iLlsT~~s~~~~lDAf~G~~~~tfs----~~~~--~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-- 266 (311)
T KOG1446|consen 199 ----GKSILLSTNASFIYLLDAFDGTVKSTFS----GYPN--AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK-- 266 (311)
T ss_pred ----CCEEEEEeCCCcEEEEEccCCcEeeeEe----eccC--CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE--
Confidence 4888888889999999887665332221 1211 111123367999999999999999999999987753
Q ss_pred cccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecc
Q 003208 560 CYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~ 610 (839)
+..+...+..++.|+.|+|.--.+|++ +..+.+|-..
T Consensus 267 ------------v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 267 ------------VAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ------------eeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 122222368889999999876666665 5567777655
No 116
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5e-20 Score=194.97 Aligned_cols=532 Identities=14% Similarity=0.115 Sum_probs=314.4
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEE
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~v 161 (839)
+|+ ..+.+.-+..|.||...+ ++++..+.+|..+++.+.+.|......++.+++.||.|++
T Consensus 26 nD~----k~l~~~~~~~V~VyS~~T---------------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 26 NDA----KFLFLCTGNFVKVYSTAT---------------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred cCC----cEEEEeeCCEEEEEecch---------------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 777 555666678899999987 5678899999999999999983323357789999999999
Q ss_pred EecCCCceEEEEecCCc--eeEEEEeeccCCccceEEEEeecCCeE-EEEEeeccccccCCCCCCCccCCCCCCCceeeE
Q 003208 162 WDISNSSIILEVHSPER--CLLYSMKLWGDNLEALRIASGTIYNEI-IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (839)
Q Consensus 162 wd~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~l~sg~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (839)
||...+..++++..... ...+...+... ...+..+..+..+ ...... ...+. ....
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~---s~~~~~s~~~~~~~~~~s~~---~~~q~---------------~~~~ 145 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADI---SANVYVSVEDYSILTTFSKK---LSKQS---------------SRFV 145 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCc---cceeEeecccceeeeecccc---cccce---------------eeeE
Confidence 99999999888764332 22332222111 1111111111111 001100 00000 0000
Q ss_pred eecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-
Q 003208 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (839)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 317 (839)
+ ..........+.+|.. -.+|.+++.+.+....-. ..+.+|+...... ..... ..-..|...+++.+++
T Consensus 146 ~--~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~-----~~~~~-~~~~~Htf~~t~~~~sp 215 (792)
T KOG1963|consen 146 L--ATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTK-----HTSSR-DITVHHTFNITCVALSP 215 (792)
T ss_pred e--eeccccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEEEecccce-----eeccc-hhhhhhcccceeEEecc
Confidence 0 0000111112223333 456788888876655544 5688888876432 00000 1334577778888888
Q ss_pred -CCEEEEEeCCCeEEEEcCCC-----ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcc
Q 003208 318 -DSFIITAGEDCTCRVWGSDG-----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (839)
Q Consensus 318 -~~~l~s~~~dg~i~vw~~~~-----~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 391 (839)
+++++++..||.|.+|.--+ .....+.-|.. .|.+++|+++|.+|++||..|.+.+|.+.+.. +++
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf------ 287 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF------ 287 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-ccc------
Confidence 68999999999999998622 34567788888 69999999999999999999999999995532 111
Q ss_pred cccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeE-EEEeccceEEEEEecCCCCceeEEEeeec--------
Q 003208 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWNKILQVS-------- 462 (839)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-------- 462 (839)
++.-.++|..+.++||+.+ .+...|..|..++..+..... ..++-
T Consensus 288 -----------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 288 -----------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPTPSTK 341 (792)
T ss_pred -----------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---hccCccCCCcccc
Confidence 1122357999999998854 455678888777664432211 00000
Q ss_pred --CCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccc--eeEEeeEEEeecCCCeEE
Q 003208 463 --EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI--ERQLLGTYWCKSLGHRFI 538 (839)
Q Consensus 463 --~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l 538 (839)
...-...+.+.+ ..+.++..+..|.|++||+.+.....+........... ..++..+..+.+..|.++
T Consensus 342 ~~~~~l~t~~~idp--------r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDP--------RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred ccccccceeEEEcC--------CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 011112222222 23678888999999999998876554433322111111 122222223344568888
Q ss_pred EEeCC--------CC--cEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecC--CCEEEEecCCccEEE
Q 003208 539 FTADP--------KG--RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE--DEVLFCGDLRGNLVL 606 (839)
Q Consensus 539 ~s~~~--------dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~~la~gs~dg~i~i 606 (839)
+|... || .+++|...... .+..+.......|...+.+.++.+. ....++++.||.++|
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~----------kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNS----------KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCc----------ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 87642 22 47888877543 2223334444578877777776643 337899999999999
Q ss_pred EecccccccCCCccceeecCcceeeeccc--CCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeee
Q 003208 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAH--GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQV 684 (839)
Q Consensus 607 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~ 684 (839)
|-+.... ...+....+++...+ .+.++++.+|+ .|| .+++.|.|+.|.+||.+.....+...+....
T Consensus 484 W~~~~~~-------n~~k~~s~W~c~~i~sy~k~~i~a~~fs---~dG-slla~s~~~~Itiwd~~~~~~l~~~~~~~~~ 552 (792)
T KOG1963|consen 484 WVFTDDS-------NIYKKSSNWTCKAIGSYHKTPITALCFS---QDG-SLLAVSFDDTITIWDYDTKNELLCTEGSRNW 552 (792)
T ss_pred EEEeccc-------ccCcCccceEEeeeeccccCcccchhhc---CCC-cEEEEecCCEEEEecCCChhhhhcccccccc
Confidence 9997532 122233334444322 24789999999 775 6888999999999999884221111111111
Q ss_pred eeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEEEeeC
Q 003208 685 KELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCG 733 (839)
Q Consensus 685 ~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~cg 733 (839)
.....+..+.. ..++ .+.-+....+.+||.-+..-.++..|+
T Consensus 553 ~~~~~~~~~~~-----~~~~--~~~~~~~~~l~~WNll~~~l~w~~s~~ 594 (792)
T KOG1963|consen 553 PIAELLFTAQT-----QNDG--ALVHATQQRLSVWNLLSMSLIWNLSLS 594 (792)
T ss_pred chHhHhhhccc-----cccc--ceeeccCceEehHhhhhhheecchhhh
Confidence 10111110000 0011 122344677889998888777655553
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=2.1e-22 Score=197.93 Aligned_cols=240 Identities=16% Similarity=0.244 Sum_probs=195.2
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC--CCcceEEEEEe
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFL 141 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~ 141 (839)
|+.-|.+++++ ... ..+-++|.|-|+|||+..... ..++..|.. -...|.++.++
T Consensus 418 HGEvVcAvtIS-------~~t----rhVyTgGkgcVKVWdis~pg~------------k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTIS-------NPT----RHVYTGGKGCVKVWDISQPGN------------KSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEec-------CCc----ceeEecCCCeEEEeeccCCCC------------CCccccccccCcccceeeeEec
Confidence 45567788888 443 778888999999999985431 123333332 34679999999
Q ss_pred eccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCC
Q 003208 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 142 ~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~ 220 (839)
| +++.|++|+.-.++.|||+.........+... ...+|.++. ++|.++.+++..||.|.|||+.
T Consensus 475 p---dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~---spDakvcFsccsdGnI~vwDLh--------- 539 (705)
T KOG0639|consen 475 P---DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDAKVCFSCCSDGNIAVWDLH--------- 539 (705)
T ss_pred C---CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc---CCccceeeeeccCCcEEEEEcc---------
Confidence 9 99999999999999999998765433322111 223444444 7999999999999999999999
Q ss_pred CCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeee
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
....++.|+||.+.+.||..+++|..|.+|+-|.+||.||++.+...
T Consensus 540 ------------------------nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql--------- 586 (705)
T KOG0639|consen 540 ------------------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL--------- 586 (705)
T ss_pred ------------------------cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---------
Confidence 78889999999999999999999999999999999999999987651
Q ss_pred ceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 301 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
......+.|.++.++ +.+++.|-+++.+.|...++.....+..|.. .|.++.|.+.|+++++.|.|+.+..|..
T Consensus 587 --qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 587 --QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred --hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccccc-EEEEEEecccCceeeecCchhhhhhccC
Confidence 223345678888887 6899999999999999988888888888888 7999999999999999999999999987
No 118
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=3.3e-21 Score=207.48 Aligned_cols=218 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC-CcEEEEEeCCCcEEEEecCCCc------
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS------ 168 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~-~~~las~~~d~~i~vwd~~~~~------ 168 (839)
.+.|++|+... ...+..+.+|.+.|.+++|+| + +.+||+|+.|++|+|||+.++.
T Consensus 53 ~gvI~L~~~~r---------------~~~v~~L~gH~~~V~~lafsP---~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 53 IGAIRLENQMR---------------KPPVIKLKGHTSSILDLQFNP---CFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred eeEEEeeecCC---------------CceEEEEcCCCCCEEEEEEcC---CCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 46788888653 346778899999999999999 6 7899999999999999997542
Q ss_pred --eEEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc
Q 003208 169 --IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (839)
Q Consensus 169 --~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (839)
.+..+..+. ..+.++.| +|++. ++++++.|+.|++||+. .
T Consensus 115 ~~p~~~L~gH~-~~V~sVaf---~P~g~~iLaSgS~DgtIrIWDl~---------------------------------t 157 (568)
T PTZ00420 115 KDPQCILKGHK-KKISIIDW---NPMNYYIMCSSGFDSFVNIWDIE---------------------------------N 157 (568)
T ss_pred ccceEEeecCC-CcEEEEEE---CCCCCeEEEEEeCCCeEEEEECC---------------------------------C
Confidence 223344443 34566666 45555 56789999999999998 4
Q ss_pred ceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEE-----eEEC--C
Q 003208 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-----CCLT--D 318 (839)
Q Consensus 246 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-----~~~~--~ 318 (839)
.+.+..+. |...|.+++|+|+|.+|++++.|+.|++||++++.. + ..+.+|.+.+.+ ..|+ +
T Consensus 158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-----i-----~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-----A-----SSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----E-----EEEecccCCceeEEEEeeeEcCCC
Confidence 55555554 567899999999999999999999999999998755 2 256778765432 3343 4
Q ss_pred CEEEEEeCCC----eEEEEcCC--CceEEEeecccCC-ceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 319 SFIITAGEDC----TCRVWGSD--GKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 319 ~~l~s~~~dg----~i~vw~~~--~~~~~~~~~h~~~-~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+++++++.|+ .|++||+. ++++..+..+... .+......+++.++++|+.|+.|++|++..
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 7899988774 79999993 5666555433321 222333345688999999999999999954
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.8e-22 Score=198.34 Aligned_cols=279 Identities=13% Similarity=0.224 Sum_probs=222.9
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCC---eeeeEEeee-cCceEEeEEecccccccCCCccceeeE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~---~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
.|..-|.++..| .. .+.+++|.-|.|+|||+... ..+..+.+. .++-|..+... ||| ..
T Consensus 417 ~HGEvVcAvtIS--~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-------pdg----rt 479 (705)
T KOG0639|consen 417 AHGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-------PDG----RT 479 (705)
T ss_pred ccCcEEEEEEec--CC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec-------CCC----ce
Confidence 366678888888 55 78999999999999998642 345555554 35567788888 898 45
Q ss_pred EEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 91 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
|+++| -.++.|||+..+. ......+....-...+++.+| |.++.+++..||.|.|||+.+...
T Consensus 480 LivGGeastlsiWDLAapT-------------prikaeltssapaCyALa~sp---DakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred EEeccccceeeeeeccCCC-------------cchhhhcCCcchhhhhhhcCC---ccceeeeeccCCcEEEEEccccee
Confidence 55555 6899999998754 333334444445678899999 999999999999999999999999
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
++.++++... +.++.+ +.+|..|-+|+-|++|+.||++ .++.+
T Consensus 544 VrqfqGhtDG-ascIdi---s~dGtklWTGGlDntvRcWDlr---------------------------------egrql 586 (705)
T KOG0639|consen 544 VRQFQGHTDG-ASCIDI---SKDGTKLWTGGLDNTVRCWDLR---------------------------------EGRQL 586 (705)
T ss_pred eecccCCCCC-ceeEEe---cCCCceeecCCCccceeehhhh---------------------------------hhhhh
Confidence 9999887643 334444 6899999999999999999998 33333
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d 327 (839)
... .....|+++..+|++.+++.|-..+.+.+-.....+. +.+..|.+-|.++.|. ++++++.+.|
T Consensus 587 qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 587 QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred hhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCch
Confidence 221 2346899999999999999999999998888777655 4777899999999998 8999999999
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.+..|.. -|..+...+... .|.++.++.|.++|+||+.|....+|.+
T Consensus 655 nlLnawrtPyGasiFqskE~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 655 NLLNAWRTPYGASIFQSKESS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhhccCccccceeeccccC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999998 677776665544 5999999999999999999998888865
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=9.3e-22 Score=212.72 Aligned_cols=322 Identities=17% Similarity=0.256 Sum_probs=227.0
Q ss_pred CCceeEEEEeeccCCccceEEEEee--cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
|....+++++. .|++..+++|+ .|+.+++|+.+. . ......++.. -.+.+..+.
T Consensus 11 H~~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~~-----v---------------l~~~~~~~~~-l~k~l~~m~ 66 (942)
T KOG0973|consen 11 HNEKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQDP-----V---------------LDEKEEKNEN-LPKHLCTMD 66 (942)
T ss_pred cCCeeEEEEEe---cCCceeEecCCccccccceeecccc-----c---------------cchhhhhhcc-cchhheeec
Confidence 44444788877 59999999999 899999999761 0 0001111111 245677788
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC----ccC---CCCCceee-eceEeeccccceEEeEEC--CCEEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE----YWK---DSDSIEEV-GSSVLYGHNARVWDCCLT--DSFIIT 323 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~---~~~~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s 323 (839)
.|.+.|.|+.|+|||++||+||+|+.|.+|..... ... .....+.. ....+.+|...|..++|+ +.++++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 99999999999999999999999999999998741 000 00111111 114788999999999999 689999
Q ss_pred EeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceE
Q 003208 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIF 401 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 401 (839)
++.|++|.||+. +.+.+.++++|.+ .|-.+.|+|-|++|++-+.|++|++|+... ...+.+.+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~-------------- 211 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK-------------- 211 (942)
T ss_pred ecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeecc--------------
Confidence 999999999999 7899999999999 699999999999999999999999999643 11111111
Q ss_pred EeecCCCccceeeccCCCcceEEEEEecCCeEEEEec--cceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCC
Q 003208 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479 (839)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (839)
|... ..-...++.+.|+|||.++++.+ ++......+.+.+..+...-+-+| ..++.++.+.|.-..-
T Consensus 212 ----pf~~------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 212 ----PFEE------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFER 280 (942)
T ss_pred ----chhh------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhcc
Confidence 1100 01123588999999999988753 344444445554443333445566 4589999888764110
Q ss_pred C-----CCCC----cEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEe
Q 003208 480 P-----CGID----DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLW 550 (839)
Q Consensus 480 ~-----~~~~----~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~w 550 (839)
. .... ..+|+|+.|+.|.+|.... .+|.+.... -....+.+ ++++|||-.|++++.||+|.++
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~RPl~vi~~----lf~~SI~D--msWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PRPLFVIHN----LFNKSIVD--MSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCC--CCchhhhhh----hhcCceee--eeEcCCCCeEEEEecCCeEEEE
Confidence 0 0011 2789999999999998743 334332211 12233555 5689999999999999999999
Q ss_pred eecCC
Q 003208 551 QLCDP 555 (839)
Q Consensus 551 d~~~~ 555 (839)
.++..
T Consensus 353 ~Fee~ 357 (942)
T KOG0973|consen 353 HFEEK 357 (942)
T ss_pred EcchH
Confidence 88653
No 121
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=4.8e-21 Score=206.19 Aligned_cols=252 Identities=10% Similarity=0.091 Sum_probs=180.2
Q ss_pred CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCC-ccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV-STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.+.|++|+......+..+..|.. +|.+++|+ |+ ++ .+++++.|++|+||++......... .
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafs-------P~~~~---lLASgS~DgtIrIWDi~t~~~~~~~-------i 114 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS-SILDLQFN-------PCFSE---ILASGSEDLTIRVWEIPHNDESVKE-------I 114 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC-CEEEEEEc-------CCCCC---EEEEEeCCCeEEEEECCCCCccccc-------c
Confidence 47899999877777788887665 79999999 65 31 4555667999999999753210000 0
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcE-EEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~-las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
..++..+.+|...|.+++|+| ++.. |++++.|++|+|||+.+++.+..+..+ ..+.++.| ++++.+|++++
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsw---spdG~lLat~s 186 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKW---NIKGNLLSGTC 186 (568)
T ss_pred ccceEEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEE---CCCCCEEEEEe
Confidence 134556789999999999999 7764 579999999999999999877766533 34667776 68899999999
Q ss_pred cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEE-----EEcCCCCEEEEEe
Q 003208 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-----EWSSCGSKLVSVS 275 (839)
Q Consensus 201 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-----~~~~~~~~l~s~s 275 (839)
.|+.|++||++ .+..+..+.+|.+.+... .|++++.+|++++
T Consensus 187 ~D~~IrIwD~R---------------------------------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 187 VGKHMHIIDPR---------------------------------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred cCCEEEEEECC---------------------------------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 99999999998 677778889998865433 3568889999988
Q ss_pred CCC----cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeec-ccC
Q 003208 276 DDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE-HIG 348 (839)
Q Consensus 276 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~-h~~ 348 (839)
.|+ +|+|||++..... +.. ..+..+.+.+...... +.++++|+.|++|++|++....+..+.. ...
T Consensus 234 ~d~~~~R~VkLWDlr~~~~p----l~~---~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~ 306 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSA----LVT---MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSC 306 (568)
T ss_pred cCCCCccEEEEEECCCCCCc----eEE---EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccC
Confidence 774 7999999863221 110 1222333333333222 5788999999999999993333333322 222
Q ss_pred CceEEEEEccCC
Q 003208 349 RGIWRCLYDSLS 360 (839)
Q Consensus 349 ~~i~~~~~~~~~ 360 (839)
.++.+++|.|..
T Consensus 307 ~p~~g~~f~Pkr 318 (568)
T PTZ00420 307 SPFRSFGFLPKQ 318 (568)
T ss_pred CCccceEEcccc
Confidence 367788888853
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=166.89 Aligned_cols=249 Identities=16% Similarity=0.237 Sum_probs=195.0
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEEC--CCCeee---eEEeeecCceEEeEEecccccccCCCcccee
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDL--EAGTLI---RPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~--~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 88 (839)
.|.+.|.|.+++ |+ +.++++|+ |.+|++.-. ++.... .++..|.+ .|..++|... |..+ .
T Consensus 87 hhkgsiyc~~ws--~~----geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~-----~~s~--~ 152 (350)
T KOG0641|consen 87 HHKGSIYCTAWS--PC----GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDD-----PESG--G 152 (350)
T ss_pred ccCccEEEEEec--Cc----cCeEEecCCCceEEEEecccccccccCcceeeeecCC-ceeeeEEecC-----CCcC--c
Confidence 388999999999 99 99999999 788887644 333322 34555555 6999999733 3221 1
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.+++..|.|..+||-.+-+. ++..+.+.+|++.|.++- +- ++-++++|++|.+|++||++-..
T Consensus 153 ~il~s~gagdc~iy~tdc~~-------------g~~~~a~sghtghilaly-sw---n~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGR-------------GQGFHALSGHTGHILALY-SW---NGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred eEEEecCCCcceEEEeecCC-------------CCcceeecCCcccEEEEE-Ee---cCcEEEccCCCceEEEEeeeccc
Confidence 56666665666666554433 677889999999999873 44 78899999999999999999888
Q ss_pred eEEEEec------CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 169 IILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 169 ~~~~~~~------~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
++.++.. -+.+.+.+++. .|.|.+|++|-.|....+||++
T Consensus 216 ~v~~l~~~~~~~glessavaav~v---dpsgrll~sg~~dssc~lydir------------------------------- 261 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAV---DPSGRLLASGHADSSCMLYDIR------------------------------- 261 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEE---CCCcceeeeccCCCceEEEEee-------------------------------
Confidence 8877642 12344445554 7899999999999999999999
Q ss_pred cccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CE
Q 003208 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SF 320 (839)
Q Consensus 243 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 320 (839)
.+++++.+..|...|.++.|+|...++++|+.|..|++=|+...-. .++.......|...+..+.|++ -.
T Consensus 262 --g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla------~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 262 --GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA------HELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred --CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh------hcCceEEEEeccCceEEEEecCccce
Confidence 7889999999999999999999999999999999999999976532 2333346778999999999994 56
Q ss_pred EEEEeCCCeEEEEcCC
Q 003208 321 IITAGEDCTCRVWGSD 336 (839)
Q Consensus 321 l~s~~~dg~i~vw~~~ 336 (839)
+++.+.|.++.+|-+.
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 8899999999999763
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=5.2e-22 Score=194.28 Aligned_cols=259 Identities=18% Similarity=0.265 Sum_probs=194.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe----------eeeEEeeecCceEEeEEecccccccCCCc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT----------LIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 84 (839)
|.+.|..+.+- |- ...+++++. ++.|.|||..+-. +-.++.+|+. .=.+++|+++ ..|
T Consensus 123 h~gEVnRaRym--PQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~-----~~g 191 (422)
T KOG0264|consen 123 HDGEVNRARYM--PQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQ-----QEG 191 (422)
T ss_pred CCccchhhhhC--CC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccc-----cce
Confidence 77888888888 87 234555555 7999999976421 1126666665 2577889854 343
Q ss_pred cceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 85 ~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
.+++++.|++|.+||+........ ...+...+.+|.+.|.+++|+| ....++++++.|+.+.|||+
T Consensus 192 ----~Lls~~~d~~i~lwdi~~~~~~~~--------~~~p~~~~~~h~~~VeDV~~h~--~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 192 ----TLLSGSDDHTICLWDINAESKEDK--------VVDPKTIFSGHEDVVEDVAWHP--LHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ----eEeeccCCCcEEEEeccccccCCc--------cccceEEeecCCcceehhhccc--cchhhheeecCCCeEEEEEc
Confidence 677777799999999986442111 1456678899999999999999 36678999999999999999
Q ss_pred CC--CceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 165 SN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 165 ~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
++ .+.......+ ...+.++.|- +-++.+||+|+.|++|.+||+++
T Consensus 258 R~~~~~~~~~~~ah-~~~vn~~~fn--p~~~~ilAT~S~D~tV~LwDlRn------------------------------ 304 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAH-SAEVNCVAFN--PFNEFILATGSADKTVALWDLRN------------------------------ 304 (422)
T ss_pred CCCCCCCccccccc-CCceeEEEeC--CCCCceEEeccCCCcEEEeechh------------------------------
Confidence 95 3333333333 3456777773 44578999999999999999981
Q ss_pred cccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCC-----C-CceeeeceEeeccccceEEeE
Q 003208 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDS-----D-SIEEVGSSVLYGHNARVWDCC 315 (839)
Q Consensus 243 ~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~-----~-~~~~~~~~~~~~h~~~v~~~~ 315 (839)
-.++++.+.+|++.|++|.|+|.. ..|+|++.|+.+.+||+..-....+ + ..+.+ +.-.||...|..+.
T Consensus 305 --L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll--F~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 305 --LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL--FIHGGHTAKVSDFS 380 (422)
T ss_pred --cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee--EEecCccccccccc
Confidence 345788999999999999999965 6789999999999999976433211 0 11111 56779999999999
Q ss_pred EC---CCEEEEEeCCCeEEEEcCC
Q 003208 316 LT---DSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 316 ~~---~~~l~s~~~dg~i~vw~~~ 336 (839)
|+ +-.|+|.++|+.+.||...
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 98 4689999999999999874
No 124
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=6.1e-21 Score=204.97 Aligned_cols=228 Identities=13% Similarity=0.103 Sum_probs=166.0
Q ss_pred eeeeeeEEEEecCC-CCCCCcceEEEee-CCeeEEEECCCCe-------eeeEEeeecCceEEeEEecccccccCCCccc
Q 003208 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGT-------LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
|.++|++++|+ | + +.+|++|+ |+.|+|||+.++. .+..+..|.. .|.+++|+ |++.
T Consensus 74 H~~~V~~v~fs--P~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~-------P~~~- 138 (493)
T PTZ00421 74 QEGPIIDVAFN--PFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFH-------PSAM- 138 (493)
T ss_pred CCCCEEEEEEc--CCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeC-------cCCC-
Confidence 78899999999 8 6 66778777 9999999997652 4566776554 79999999 6542
Q ss_pred eeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 87 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
..+++++.|++|+|||+.. .+.+..+.+|.+.|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 139 -~iLaSgs~DgtVrIWDl~t---------------g~~~~~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 139 -NVLASAGADMVVNVWDVER---------------GKAVEVIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred -CEEEEEeCCCEEEEEECCC---------------CeEEEEEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECCC
Confidence 0455556699999999985 456677889999999999999 999999999999999999999
Q ss_pred CceEEEEecCCceeEEEEeeccCCccceEEEEee----cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
++.+..+..+.......+.+ .+++..+++++ .|+.|++||++.
T Consensus 200 g~~v~tl~~H~~~~~~~~~w---~~~~~~ivt~G~s~s~Dr~VklWDlr~------------------------------ 246 (493)
T PTZ00421 200 GTIVSSVEAHASAKSQRCLW---AKRKDLIITLGCSKSQQRQIMLWDTRK------------------------------ 246 (493)
T ss_pred CcEEEEEecCCCCcceEEEE---cCCCCeEEEEecCCCCCCeEEEEeCCC------------------------------
Confidence 99888887665432222222 24445555543 479999999871
Q ss_pred cccceeeEEEec-CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCE
Q 003208 243 QHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (839)
Q Consensus 243 ~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 320 (839)
...++..... +...+....|+++++.|++++ .|+.|++||+.++.. .. .....+..++..++|.++.
T Consensus 247 --~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~-----~~----~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 247 --MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL-----TF----CSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred --CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce-----EE----EeeccCCCCCcceEecccc
Confidence 1223333332 334566677899999999887 599999999988654 11 1222344566677776544
Q ss_pred E
Q 003208 321 I 321 (839)
Q Consensus 321 l 321 (839)
.
T Consensus 316 ~ 316 (493)
T PTZ00421 316 S 316 (493)
T ss_pred c
Confidence 3
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=178.92 Aligned_cols=304 Identities=18% Similarity=0.230 Sum_probs=193.2
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC---CEEEEEeC
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGE 326 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~ 326 (839)
..++||.+.|++++|+.||++|++++.|++|++|++++...... +.+..-...+ ..+.+.|.+ ..++++-.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---r~~R~nve~d---hpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH---RCIRQNVEYD---HPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh---hHhhccccCC---CceEEEECCCcceEEEEEcc
Confidence 35789999999999999999999999999999999988543211 1111111223 356678874 57777778
Q ss_pred CCeEEEEcCC----CceEE---------EeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccc
Q 003208 327 DCTCRVWGSD----GKQLK---------MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE 393 (839)
Q Consensus 327 dg~i~vw~~~----~~~~~---------~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 393 (839)
..++++|.+. |.... --+.|.- .+..+-....+.+|++++.|..|.+|+++++.++.+....
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v-~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq---- 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQV-DIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ---- 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhccc-ceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccc----
Confidence 8899999872 22111 1112333 4556666677899999999999999999887665543222
Q ss_pred cCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeec
Q 003208 394 FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLL 473 (839)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 473 (839)
..-...+.+|+|++++.+. +.....-|+.++....
T Consensus 229 --------------------------~~n~~aavSP~GRFia~~g---------FTpDVkVwE~~f~kdG---------- 263 (420)
T KOG2096|consen 229 --------------------------SSNYDAAVSPDGRFIAVSG---------FTPDVKVWEPIFTKDG---------- 263 (420)
T ss_pred --------------------------ccccceeeCCCCcEEEEec---------CCCCceEEEEEeccCc----------
Confidence 1234556778887776651 1121222433322110
Q ss_pred CCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeec
Q 003208 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (839)
Q Consensus 474 ~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~ 553 (839)
.-....+++.+... ...+.. .||+++.+.+++.+.||++++||.+
T Consensus 264 -----------------~fqev~rvf~LkGH----------------~saV~~--~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 264 -----------------TFQEVKRVFSLKGH----------------QSAVLA--AAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -----------------chhhhhhhheeccc----------------hhheee--eeeCCCcceeEEEecCCcEEEeecc
Confidence 00111233333221 122222 6899999999999999999999988
Q ss_pred CCCCccccc-CCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeee
Q 003208 554 DPFSSVCYE-SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK 632 (839)
Q Consensus 554 ~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (839)
-.......+ +......++ ..-++.-..++.||+|+.||.+. -..+++|..+++. ...++.
T Consensus 309 VrY~~~qDpk~Lk~g~~pl-----~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~-------------~~~~~e 369 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPL-----HAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK-------------DYPELE 369 (420)
T ss_pred ceEecCCCchHhhcCCcch-----hhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc-------------cchhHH
Confidence 653322211 111111111 11233344899999999998764 5579999887532 122334
Q ss_pred cccCCCceeEEEEEeccCCceEEEeecCcCcEEEEE
Q 003208 633 GAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 633 ~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~ 668 (839)
..|+ ..|++|+|+ +++++++|+| |..+++..
T Consensus 370 ~~h~-~~Is~is~~---~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 DIHS-TTISSISYS---SDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred Hhhc-CceeeEEec---CCCcEEeeec-ceeeeeec
Confidence 5777 789999999 8999999988 66777764
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=188.61 Aligned_cols=275 Identities=14% Similarity=0.185 Sum_probs=205.3
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccce
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 122 (839)
..+.+||+.+|..+.+++..-...-+++..-. +. .++++ .....+.+|.+....
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~-----yllsaq~~rp~l~vw~i~k~~-------------- 72 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NE-----YLLSAQLKRPLLHVWEILKKD-------------- 72 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc------hh-----heeeecccCccccccccCchh--------------
Confidence 56999999999999888864221223333220 11 34443 345789999987532
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
..+....-.++|.+++-+| +|.+|+.|+..+.+++|.+.+|..+..+..|-. .+.++.| +.|+.+|++|+.|
T Consensus 73 -~~~q~~v~Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~f---s~dgs~iiTgskD 144 (476)
T KOG0646|consen 73 -QVVQYIVLPGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKF---SDDGSHIITGSKD 144 (476)
T ss_pred -hhhhhcccccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEE---eCCCcEEEecCCC
Confidence 1122334567899999999 999999888999999999999999887754433 3555665 6889999999999
Q ss_pred CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcE
Q 003208 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSA 280 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d~~i 280 (839)
|.|.+|.+..- .+++ .....++++.+..|+-+|+.+...+. ..+++|+|.|+++
T Consensus 145 g~V~vW~l~~l-----------v~a~-------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 145 GAVLVWLLTDL-----------VSAD-------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ccEEEEEEEee-----------cccc-------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 99999998610 0000 01146788899999999999998765 4689999999999
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC---C--------------CceEE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---D--------------GKQLK 341 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~---~--------------~~~~~ 341 (839)
++||+..+... ........+.+++.+ +..++.|+++|.|.+.++ . +..+.
T Consensus 201 k~wdlS~g~LL-----------lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 201 KLWDLSLGVLL-----------LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EEEEeccceee-----------EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 99999988662 333345678888888 588999999999998876 2 12445
Q ss_pred EeecccC-CceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcC
Q 003208 342 MIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (839)
Q Consensus 342 ~~~~h~~-~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~ 386 (839)
.+.+|.+ ++|+|++++-||.+|++|+.||+|.+||+.. ++++++.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 6677776 5799999999999999999999999999954 4555443
No 127
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.2e-19 Score=183.36 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeee-----EEeeecCceEEeEEecccccccCCCccceee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIR-----PFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 89 (839)
|...|+.+.|+ |- ...+|++++ |..|+||.+..|-... ..-.+....|.++.|++. .| .
T Consensus 78 H~d~VtDl~Fs--pF---~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT-----aD-----g 142 (1012)
T KOG1445|consen 78 HGDQVTDLGFS--PF---ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT-----AD-----G 142 (1012)
T ss_pred ccceeeccCcc--cc---chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccC-----cC-----c
Confidence 77889999999 63 246788877 9999999998553211 122344557889999955 45 6
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC-Cc
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SS 168 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~-~~ 168 (839)
+++++..++++|||+.+ .+....+.+|.+.|.++.|+. +|.+|++...|..|+|||.+. ++
T Consensus 143 il~s~a~g~v~i~D~st---------------qk~~~el~~h~d~vQSa~Wse---DG~llatscKdkqirifDPRa~~~ 204 (1012)
T KOG1445|consen 143 ILASGAHGSVYITDIST---------------QKTAVELSGHTDKVQSADWSE---DGKLLATSCKDKQIRIFDPRASME 204 (1012)
T ss_pred eEEeccCceEEEEEccc---------------CceeecccCCchhhhcccccc---CCceEeeecCCcceEEeCCccCCC
Confidence 88888899999999997 456778899999999999999 999999999999999999975 56
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeec----CCeEEEEEee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVD 211 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~----dg~i~vw~~~ 211 (839)
.++..++|....-.-+.|. .+-..|++.+. -..|++||.+
T Consensus 205 piQ~te~H~~~rdsRv~w~---Gn~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 205 PIQTTEGHGGMRDSRVLWA---GNWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred ccccccccccchhheeeec---cchhhhhhcccchhhheeeeeeecc
Confidence 6666666553221112221 12224444333 3678889876
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.4e-21 Score=186.42 Aligned_cols=257 Identities=18% Similarity=0.212 Sum_probs=194.7
Q ss_pred CccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEeccc
Q 003208 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (839)
Q Consensus 5 ~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 76 (839)
-+.+|.+.... ..++|.||+-+ |+ |.+|++|. .+.|++|.+.+|+++..+..|= +.|++|.|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~--n~----G~~l~ag~i~g~lYlWelssG~LL~v~~aHY-Q~ITcL~fs-- 132 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASS--NL----GYFLLAGTISGNLYLWELSSGILLNVLSAHY-QSITCLKFS-- 132 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecC--CC----ceEEEeecccCcEEEEEeccccHHHHHHhhc-cceeEEEEe--
Confidence 35677776654 35789999999 88 89999995 8999999999999999997654 479999999
Q ss_pred ccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC
Q 003208 77 NCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (839)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d 156 (839)
.||. .+++++.||.|.+|.+..-- +++.....++.+.+..|.-+|+++...+- ....+|+|+|.|
T Consensus 133 -----~dgs---~iiTgskDg~V~vW~l~~lv------~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~D 197 (476)
T KOG0646|consen 133 -----DDGS---HIITGSKDGAVLVWLLTDLV------SADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASED 197 (476)
T ss_pred -----CCCc---EEEecCCCccEEEEEEEeec------ccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecCC
Confidence 7873 66666779999999987422 11112235788999999999999999871 134589999999
Q ss_pred CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCcee
Q 003208 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (839)
Q Consensus 157 ~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (839)
.++++||+..+..+.++..+.. +.++.. +|.+..++.|+.+|.|.+.++..-. ++.. +-.
T Consensus 198 ~t~k~wdlS~g~LLlti~fp~s--i~av~l---Dpae~~~yiGt~~G~I~~~~~~~~~--~~~~-------------~v~ 257 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTITFPSS--IKAVAL---DPAERVVYIGTEEGKIFQNLLFKLS--GQSA-------------GVN 257 (476)
T ss_pred ceEEEEEeccceeeEEEecCCc--ceeEEE---cccccEEEecCCcceEEeeehhcCC--cccc-------------ccc
Confidence 9999999999999988876653 233333 6888999999999999998876211 0000 000
Q ss_pred eEeecccccceeeEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe
Q 003208 237 FKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (839)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 314 (839)
.+... .....+..+.||.+ .|+|++.+-||..|++|+.||.|++||+...++ ++ ++....++|+.+
T Consensus 258 ~k~~~--~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~-----iR-----tl~~~kgpVtnL 325 (476)
T KOG0646|consen 258 QKGRH--EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC-----IR-----TLQTSKGPVTNL 325 (476)
T ss_pred ccccc--cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH-----HH-----HHhhhcccccee
Confidence 01111 13456777899999 999999999999999999999999999998776 33 333356778888
Q ss_pred EEC
Q 003208 315 CLT 317 (839)
Q Consensus 315 ~~~ 317 (839)
.+.
T Consensus 326 ~i~ 328 (476)
T KOG0646|consen 326 QIN 328 (476)
T ss_pred Eee
Confidence 774
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=8.4e-20 Score=168.06 Aligned_cols=320 Identities=18% Similarity=0.235 Sum_probs=206.3
Q ss_pred ecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 63 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
.|++.|+.+++.+ ..|+ .++..+.|++|.|||++.........--......-....-.+|.-.|.++.|-|
T Consensus 41 ~HgGsvNsL~id~------tegr---ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL------TEGR---YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred cCCCccceeeecc------ccce---EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence 3455789888873 2342 555556699999999986431111100000001112234567889999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCC
Q 003208 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (839)
Q Consensus 143 ~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~ 222 (839)
. +..++.+++-|.+++|||..+.+....+..+.. +|+-+...-...-.+||+|+.+-+|++.|+.
T Consensus 112 ~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~--VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----------- 176 (397)
T KOG4283|consen 112 I--DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK--VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----------- 176 (397)
T ss_pred e--cCceeecccccceEEEeecccceeeEEeecCce--eehhhcChhhhcceEEEEecCCCcEEEEecc-----------
Confidence 5 666888999999999999999988877665443 4443332223345689999999999999999
Q ss_pred CCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcccCccCCCCCceeeec
Q 003208 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 301 (839)
.+..-+.+.||.+.|.++.|+|...+ |++|+.||.||+||++.... +.
T Consensus 177 ----------------------SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg----cf----- 225 (397)
T KOG4283|consen 177 ----------------------SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG----CF----- 225 (397)
T ss_pred ----------------------CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc----ee-----
Confidence 88899999999999999999998775 68999999999999986421 01
Q ss_pred eEeeccccceEEeEECCCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-
Q 003208 302 SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF- 380 (839)
Q Consensus 302 ~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~- 380 (839)
..+..|... ....++.-..|.+ .+..++|..++.++++++.|..+++|+....
T Consensus 226 ~~lD~hn~k-------------------------~~p~~~~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 226 RVLDQHNTK-------------------------RPPILKTNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EEeecccCc-------------------------cCccccccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence 123333210 0111222345777 4999999999999999999999999998431
Q ss_pred -CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec-CCeEEEEeccceEEEEEecCCCCceeEEE
Q 003208 381 -LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (839)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 458 (839)
.++.+.. +. .+..... .+. +. +. .+.++....++.+..+.+.+... ...
T Consensus 280 ntl~~~g~------------~~----~n~~~~~--------~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~---ir~ 330 (397)
T KOG4283|consen 280 NTLREFGP------------II----HNQTTSF--------AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF---VRR 330 (397)
T ss_pred cccccccc------------cc----ccccccc--------eEE-Ee-ecccceEEEEecCCeEEEEEccCceE---EEe
Confidence 1111110 00 0000000 011 11 11 12344444556676666555432 233
Q ss_pred eeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEE
Q 003208 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (839)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~ 501 (839)
...| ...+.|....++. +.+.+|..|+.|..|..
T Consensus 331 l~~h-~k~i~c~~~~~~f--------q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 331 LSTH-LKRINCAAYRPDF--------EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecc-cceeeEEeecCch--------hhhhccccCCccccccc
Confidence 4445 4556665554443 67889999999999965
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=4.2e-20 Score=170.01 Aligned_cols=303 Identities=16% Similarity=0.233 Sum_probs=212.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe------eeeE----Eee----ecCceEEeEEeccccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIRP----FQV----FHGIRLHGISCNFINCTE 80 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~------~~~~----~~~----~~~~~v~~i~~~~~~~~~ 80 (839)
|.|.|.+|... +. .++|+++|. ||.|.+||++... ++.. +.. .|...|..+.|-|.
T Consensus 42 HgGsvNsL~id--~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---- 112 (397)
T KOG4283|consen 42 HGGSVNSLQID--LT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---- 112 (397)
T ss_pred CCCccceeeec--cc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----
Confidence 88999999988 54 589999988 9999999997542 1111 111 12345677777743
Q ss_pred CCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcE
Q 003208 81 GSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (839)
Q Consensus 81 ~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i 159 (839)
.. .+++.+ -|.+++|||..+. +....++ .++.|.+-+++|....-.++|+|..|-.|
T Consensus 113 -Dt-----GmFtssSFDhtlKVWDtnTl---------------Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 113 -DT-----GMFTSSSFDHTLKVWDTNTL---------------QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred -cC-----ceeecccccceEEEeecccc---------------eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcE
Confidence 23 455554 4999999999863 3333333 45778999999966556688999999999
Q ss_pred EEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEe
Q 003208 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (839)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (839)
++.|+..|...+.+.+|... +.++.+. +...-.|++|+.||.|++||++.. .++++.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~-vlaV~Ws--p~~e~vLatgsaDg~irlWDiRra--------------------sgcf~~ 227 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDG-VLAVEWS--PSSEWVLATGSADGAIRLWDIRRA--------------------SGCFRV 227 (397)
T ss_pred EEEeccCCcceeeeccccCc-eEEEEec--cCceeEEEecCCCceEEEEEeecc--------------------cceeEE
Confidence 99999999999999877654 5566652 334557889999999999999811 122222
Q ss_pred eccccc--ceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeE-E
Q 003208 240 QDQQHT--AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-L 316 (839)
Q Consensus 240 ~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~ 316 (839)
.+.... ...+..-..|.+.|++++|..++.++++++.|..+++|+...+... .++.++.........-..+. .
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt----l~~~g~~~~n~~~~~~~~~~~~ 303 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT----LREFGPIIHNQTTSFAVHIQSM 303 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc----ccccccccccccccceEEEeec
Confidence 222211 1122224579999999999999999999999999999999887653 33332211111111111111 1
Q ss_pred CCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 317 ~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
....++---.++.+.++++ ++..+..+..|. +.|.+.++.|+-+...+|..|+.+..|..
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~-k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL-KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEEEeeeccc-ceeeEEeecCchhhhhccccCCccccccc
Confidence 1233444445689999999 999999999995 47999999999889999999999999987
No 131
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=7.3e-20 Score=186.07 Aligned_cols=464 Identities=15% Similarity=0.172 Sum_probs=283.5
Q ss_pred eeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCc
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEK 97 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~ 97 (839)
.|..++|- || |.-|+.+.|..+.|||...|.++.++++|++ .|.+++++ .|| ..++. +.|+
T Consensus 14 ci~d~afk--PD----GsqL~lAAg~rlliyD~ndG~llqtLKgHKD-tVycVAys-------~dG----krFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFK--PD----GTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYA-------KDG----KRFASGSADK 75 (1081)
T ss_pred chheeEEC--CC----CceEEEecCCEEEEEeCCCcccccccccccc-eEEEEEEc-------cCC----ceeccCCCce
Confidence 78999999 99 6677777778999999999999999999887 69999999 898 45555 4599
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
.|.+|.-+.+. .+ .+ .|.+.|.|+.|+| -...|++++.. ..-+|......... .+...
T Consensus 76 ~VI~W~~klEG--------------~L--kY-SH~D~IQCMsFNP---~~h~LasCsLs-dFglWS~~qK~V~K-~kss~ 133 (1081)
T KOG1538|consen 76 SVIIWTSKLEG--------------IL--KY-SHNDAIQCMSFNP---ITHQLASCSLS-DFGLWSPEQKSVSK-HKSSS 133 (1081)
T ss_pred eEEEecccccc--------------ee--ee-ccCCeeeEeecCc---hHHHhhhcchh-hccccChhhhhHHh-hhhhe
Confidence 99999876432 11 12 5999999999999 88899998753 56788775433221 11222
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
+ +.++.+ ..||.+++-|-.+|+|.+-+-... ..-.+..-.|...
T Consensus 134 R--~~~CsW---tnDGqylalG~~nGTIsiRNk~gE-------------------------------ek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 134 R--IICCSW---TNDGQYLALGMFNGTISIRNKNGE-------------------------------EKVKIERPGGSNS 177 (1081)
T ss_pred e--EEEeee---cCCCcEEEEeccCceEEeecCCCC-------------------------------cceEEeCCCCCCC
Confidence 2 333433 578999999999999998865410 1223333446788
Q ss_pred CeEEEEEcCCC-----CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeE
Q 003208 258 SIFRIEWSSCG-----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (839)
Q Consensus 258 ~V~~l~~~~~~-----~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 330 (839)
+|++++|+|.. ..++......++.++.+...... ....-.-...|+.+. |.+++.||.|+.+
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-----------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-----------KDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-----------ccccCCCCchhheeccCCcEEEEccCCCce
Confidence 99999999953 46888888899999988764320 111122234566665 7999999999999
Q ss_pred EEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCcc
Q 003208 331 RVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (839)
Q Consensus 331 ~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (839)
.+|-.+|-.+.++..... -||+++..|+++.++.|+.||+|..|++-...++.+.........+- ..++....-...+
T Consensus 247 ~~fTR~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sM-tDVivQhLi~~qk 324 (1081)
T KOG1538|consen 247 SLFTRDGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSM-TDVIVQHLITEQK 324 (1081)
T ss_pred EEEeecCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhh-HHHHHHHHhhcce
Confidence 999999988888877666 59999999999999999999999999984322221111100000000 0000000000000
Q ss_pred -ceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEee--ecCCCceEEeeecCCCCCCCCCCCcEE
Q 003208 411 -QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ--VSEGMPIICMDLLSNEPKYPCGIDDWV 487 (839)
Q Consensus 411 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~l 487 (839)
.+. -.+-|..+++.. +++.+ --...|.+|.+++..........+ .........+-+. .+.+
T Consensus 325 vrIk----C~DLVkKiaiYr-nrLAV-QLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc----------~~Hi 388 (1081)
T KOG1538|consen 325 VRIK----CKDLVKKIAIYR-NRLAV-QLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVC----------ANHI 388 (1081)
T ss_pred eeee----HHHHHHHHHhhh-hhhee-cccceEEEEeccccccccchhHHHHHHHhhccceEEEEE----------cCeE
Confidence 000 001122222221 12222 222344455554432211000000 0000011111111 1334
Q ss_pred EEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccc
Q 003208 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (839)
Q Consensus 488 ~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 567 (839)
+.+ .+.++.-+|+.+-... .|....--+...+ ..-.+...-|+.|..+|.|.---+++..+
T Consensus 389 VlC-qekrLqClDF~Gvk~R-------eW~M~S~iRYikV-~GGP~gREgL~vGlknGqV~kiF~dN~~P---------- 449 (1081)
T KOG1538|consen 389 VLC-QEKRLQCLDFSGVKER-------EWQMESLIRYIKV-IGGPPGREGLLVGLKNGQVLKIFVDNLFP---------- 449 (1081)
T ss_pred EEE-cccceeeecccchhhh-------hhhHHHHHHhhhh-hcCCCCcceeEEEecCCcEEEEEecCCch----------
Confidence 443 3567777877542211 1111111000000 01123445688899999876555554321
Q ss_pred eeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccc
Q 003208 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 568 ~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
.........|.|++++.+-+.||+-+..++..++|+...
T Consensus 450 ------iLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~ 488 (1081)
T KOG1538|consen 450 ------ILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTK 488 (1081)
T ss_pred ------hheecccceeEEeeccCCcceEEEEccCCeEEEEEccCC
Confidence 111123667999999999999999999999999999864
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.8e-20 Score=183.50 Aligned_cols=262 Identities=16% Similarity=0.241 Sum_probs=191.2
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE----------EEEecCCceeEEEEeeccCCccceEEEEe
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII----------LEVHSPERCLLYSMKLWGDNLEALRIASG 199 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~l~sg 199 (839)
-|.+.|+.+.+.| .+..++|+++..+.|.|||..+..-. .++.+|.. .-|++.+ .......+++|
T Consensus 122 ~h~gEVnRaRymP--Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsW--n~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMP--QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSW--NRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCC--CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-ccccccc--ccccceeEeec
Confidence 5899999999999 36678888899999999998643211 14444443 1334333 34556789999
Q ss_pred ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC-CCEEEEEeCCC
Q 003208 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDR 278 (839)
Q Consensus 200 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d~ 278 (839)
+.|+.|++||+......+ ....+...+.+|+..|..++|++. ...++++++|+
T Consensus 197 ~~d~~i~lwdi~~~~~~~--------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKED--------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred cCCCcEEEEeccccccCC--------------------------ccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 999999999998222111 023456678999999999999984 46789999999
Q ss_pred cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEE
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~ 353 (839)
.+.|||.+.. . .+.. ....+|.+.|+|++|+ +..|+||+.|++|++||+ -.+++.++.+|.. .|..
T Consensus 251 ~L~iwD~R~~-~-----~~~~--~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~ 321 (422)
T KOG0264|consen 251 KLMIWDTRSN-T-----SKPS--HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQ 321 (422)
T ss_pred eEEEEEcCCC-C-----CCCc--ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEE
Confidence 9999999963 1 1111 3678899999999998 578999999999999999 3568899999998 6999
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC
Q 003208 354 CLYDSLS-SLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (839)
Q Consensus 354 ~~~~~~~-~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 431 (839)
+.|+|.. ..|+++|.|+.+.+||+... ..+..+.. ....++.+....+|...|..+.|+|..
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda----------------~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA----------------EDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhh----------------ccCCcceeEEecCcccccccccCCCCC
Confidence 9999976 58999999999999999541 11110000 011123344456788889999999977
Q ss_pred e--EEEEeccceEEEEEe
Q 003208 432 T--LYIATNHGYLYHTKL 447 (839)
Q Consensus 432 ~--~~~~~~~g~i~~~~~ 447 (839)
. +...++++.+.+|..
T Consensus 386 PW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQM 403 (422)
T ss_pred CeEEEEecCCceEEEeec
Confidence 3 334455666655543
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-19 Score=168.38 Aligned_cols=268 Identities=14% Similarity=0.206 Sum_probs=195.6
Q ss_pred EEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEE
Q 003208 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (839)
Q Consensus 59 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (839)
.++..+..-|+++.|. +-|. ++.+++.|++|+|||...+. -.+.+....+.|.+.|..+
T Consensus 7 pi~s~h~DlihdVs~D-------~~GR---RmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFD-------FYGR---RMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred ccccCCcceeeeeeec-------ccCc---eeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEE
Confidence 3443333469999999 6674 77888889999999975432 1378888999999999999
Q ss_pred EEeeccCCCcEEEEEeCCCcEEEEecCCCc------e--EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSS------I--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 139 ~~~~~~~~~~~las~~~d~~i~vwd~~~~~------~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
.|.++ .-|+.+|+++.|+++.||.-.... . ..+.-...++.++.+.|.. ..-|..+|+++.||.+|||+.
T Consensus 66 ~WAhP-EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP-~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 66 VWAHP-EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP-KHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EecCc-cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc-hhcceEEEEeccCcEEEEEec
Confidence 99763 368899999999999999873211 1 1122234455577777742 346889999999999999987
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccce-eeEEEecCCCCeEEEEEcCC---CCEEEEEeCC-----CcEE
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRIEWSSC---GSKLVSVSDD-----RSAR 281 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~d-----~~i~ 281 (839)
-. ...+..|......+ .+.....+...-.|+.|+|. ..+|+.|+.+ +.++
T Consensus 144 ~d---------------------p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~ 202 (361)
T KOG2445|consen 144 PD---------------------PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK 202 (361)
T ss_pred CC---------------------ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence 51 11223333322222 11122356778899999984 3567777776 4799
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEECC------CEEEEEeCCCeEEEEcCCC------------------
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG------------------ 337 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vw~~~~------------------ 337 (839)
||....... +..+...+.+|+.+|++++|.| .+|++++.|| |+||.+..
T Consensus 203 Iye~~e~~r------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 203 IYEYNENGR------KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred EEEecCCcc------eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence 998876542 2333347789999999999984 4799999999 99999842
Q ss_pred ---ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 338 ---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 338 ---~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+.+..+..|++ .||.+.|+-.|..|++.|.||.||+|...
T Consensus 276 l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 276 LPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 24556778998 69999999999999999999999999873
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-20 Score=168.19 Aligned_cols=234 Identities=19% Similarity=0.276 Sum_probs=178.1
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC--CC
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CG 268 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~ 268 (839)
-.+.+||+++.|++|+|+..+.+. ..+.+..|.||.++|..++|-. -|
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~------------------------------~s~ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNG------------------------------QSKLLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCC------------------------------CceeeeEecCCCCCeeEEeecccccC
Confidence 458899999999999999998211 2267889999999999999964 78
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC----CCEEEEEeCCCeEEEEcC--C-Cce-E
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS--D-GKQ-L 340 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw~~--~-~~~-~ 340 (839)
..|++|+.||.|.||.-.++.- .+......|...|.+++|. +-.|++++.||.|.|.++ + +-. .
T Consensus 71 ~iLAScsYDgkVIiWke~~g~w--------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENGRW--------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred cEeeEeecCceEEEEecCCCch--------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 9999999999999999887643 1113667899999999997 468999999999999988 3 222 2
Q ss_pred EEeecccCCceEEEEEccC---C-----------CEEEEEeCCCcEEEEecCC---cCccCcCCCCcccccCCCcceEEe
Q 003208 341 KMIKEHIGRGIWRCLYDSL---S-----------SLLVTAGFDSAIKVHQFQA---FLPGSLESHPEAKEFNGRTEIFSI 403 (839)
Q Consensus 341 ~~~~~h~~~~i~~~~~~~~---~-----------~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 403 (839)
+....|.- +|.+++|.|. | +.|++||.|..|++|+.+. ..-++
T Consensus 143 ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~------------------- 202 (299)
T KOG1332|consen 143 KIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT------------------- 202 (299)
T ss_pred hhhhcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh-------------------
Confidence 33455666 7999999876 4 4699999999999999855 22222
Q ss_pred ecCCCccceeeccCCCcceEEEEEecCC-----eEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCC
Q 003208 404 KIPNFSEQIRLTDSKSEYVRCLHLTSED-----TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (839)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (839)
+.+|.+.|+.+++.|.- .+..++.+|.+++|... .+...|+..+.......++.+..+..
T Consensus 203 -----------l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~s--- 267 (299)
T KOG1332|consen 203 -----------LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLS--- 267 (299)
T ss_pred -----------hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecc---
Confidence 34566889999999853 56667789999988765 33445655544444455666655554
Q ss_pred CCCCCCcEEEEeCCCccEEEEEEc
Q 003208 479 YPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 479 ~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
+++|++++.|.++.+|.-+
T Consensus 268 -----Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 268 -----GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -----ccEEEEecCCcEEEEEEeC
Confidence 4899999999999999654
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.1e-21 Score=196.66 Aligned_cols=283 Identities=16% Similarity=0.195 Sum_probs=206.4
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe----eeeEEee--ecCceEEeEEecccccccCCCccceeeE
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT----LIRPFQV--FHGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~----~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
.++..+|+.. ++ ..-+++.+...+.||....-. ....++. -....+..+.|.. -+. .+
T Consensus 39 k~~~nAIs~n--r~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~------~~~----Nl 102 (839)
T KOG0269|consen 39 KAKANAISVN--RD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ------LYS----NL 102 (839)
T ss_pred ccccceEeec--CC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhccccc------chh----hh
Confidence 3556777777 77 566666666788888775422 1111111 1111234455552 122 45
Q ss_pred EEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 91 VAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 91 l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
|++ +..|.|.+||+.... +.+++..+..|+..|+++.|++ ....+|++|++||+|++||++....
T Consensus 103 IAT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred heeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeecccc
Confidence 555 558999999998532 2567788999999999999998 3667899999999999999988776
Q ss_pred EEEEecCC---ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 170 ILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 170 ~~~~~~~~---~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
..+..+.. +.+.++ ...+..++++...|.+++||++ ...
T Consensus 169 ~~t~~~nSESiRDV~fs------p~~~~~F~s~~dsG~lqlWDlR--------------------------------qp~ 210 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFS------PGYGNKFASIHDSGYLQLWDLR--------------------------------QPD 210 (839)
T ss_pred cccccccchhhhceeec------cCCCceEEEecCCceEEEeecc--------------------------------Cch
Confidence 66655432 444444 3457899999999999999998 145
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC---CEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIIT 323 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s 323 (839)
++...+.+|.++|.|+.|+|++.+|||||.|+.|+|||+.+.... . ........+|.+++|-| ..|++
T Consensus 211 r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-----~----~~tInTiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 211 RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-----P----KHTINTIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-----c----eeEEeecceeeeeeeccCccchhhh
Confidence 667778899999999999999999999999999999999876541 1 12233457889999984 56777
Q ss_pred Ee--CCCeEEEEcCC--CceEEEeecccCCceEEEEEcc-CCCEEEEEeCCCcEEEEec
Q 003208 324 AG--EDCTCRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 324 ~~--~dg~i~vw~~~--~~~~~~~~~h~~~~i~~~~~~~-~~~~l~t~~~dg~i~iw~~ 377 (839)
++ .|..|+|||+. --+-.++..|.. .++.++|.. |...+.+++.||+|..-.+
T Consensus 282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred hhccccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhh
Confidence 65 57899999994 345577888887 588899954 4568999999998866554
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=4.9e-20 Score=187.10 Aligned_cols=304 Identities=16% Similarity=0.191 Sum_probs=198.4
Q ss_pred EeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEE
Q 003208 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (839)
Q Consensus 184 ~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 263 (839)
..|...+....+|+.+..||.|.++|.......+ ....+.....|.+.|+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------------------------ee~~lk~~~aH~nAifDl~ 107 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------------------------EERQLKKPLAHKNAIFDLK 107 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------------------------hhhhhcccccccceeEeec
Confidence 3343334566789999999999999987211111 1223445668999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC--CCc
Q 003208 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGK 338 (839)
Q Consensus 264 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~--~~~ 338 (839)
|-|....|++++.|.++++||+..... .+.....||...|.+++|. +..|++|+.||.+.|||+ ++.
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l--------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRL--------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred cCCCceeEEEccCCceeeeeeecccee--------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 999778899999999999999998655 2222578999999999998 689999999999999998 320
Q ss_pred --------------------------eEEEeecccCCceEE---EEEccCCCEEEEEeC-CCcEEEEecCCcCccCcCCC
Q 003208 339 --------------------------QLKMIKEHIGRGIWR---CLYDSLSSLLVTAGF-DSAIKVHQFQAFLPGSLESH 388 (839)
Q Consensus 339 --------------------------~~~~~~~h~~~~i~~---~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~ 388 (839)
.+...+.+.. .|.+ +.+..|...||++|. |+.|++||++...... +.
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~-r~- 256 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY-RQ- 256 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc-cc-
Confidence 0111122333 3444 445567788888888 9999999996521100 00
Q ss_pred CcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceE
Q 003208 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (839)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~ 468 (839)
++.....+. .. +.. ...+.
T Consensus 257 -------------------------------ep~~~~~~~------t~-skr-----------------------s~G~~ 275 (720)
T KOG0321|consen 257 -------------------------------EPRGSDKYP------TH-SKR-----------------------SVGQV 275 (720)
T ss_pred -------------------------------CCCcccCcc------Cc-ccc-----------------------eeeeE
Confidence 000000000 00 000 00111
Q ss_pred EeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEE
Q 003208 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (839)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 548 (839)
++-+... +.++++.+.|+.|++|++......+..... +....-.-+-.+.++++.+|++|+.|...+
T Consensus 276 nL~lDss--------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-----g~~~~sf~vks~lSpd~~~l~SgSsd~~ay 342 (720)
T KOG0321|consen 276 NLILDSS--------GTYLFASCTDNSIYFYNMRSLSISPVAEFS-----GKLNSSFYVKSELSPDDCSLLSGSSDEQAY 342 (720)
T ss_pred EEEecCC--------CCeEEEEecCCcEEEEeccccCcCchhhcc-----CcccceeeeeeecCCCCceEeccCCCccee
Confidence 2222221 144444455999999998776555443321 111111112246889999999999999999
Q ss_pred EeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecC-CCEEEEecCCccEEEEeccccc
Q 003208 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLRDL 613 (839)
Q Consensus 549 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~la~gs~dg~i~iw~~~~~~ 613 (839)
+|.+...+. +.....+|.-.|++++|.|. -.-+|++++|..++||++.++.
T Consensus 343 iw~vs~~e~--------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 343 IWVVSSPEA--------------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eeeecCccC--------------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 999998753 12334589999999999864 2345566999999999997653
No 137
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-17 Score=176.31 Aligned_cols=482 Identities=12% Similarity=0.123 Sum_probs=282.8
Q ss_pred EEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEE
Q 003208 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~i 101 (839)
.-.|+ +| .++++...+..|.||...||+.+..+..+. .++..+.+.+. +.. ....+.++-+|.|++
T Consensus 21 ~avfS--nD----~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~-a~l~s~~~~~~-----~~~--~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 21 PAVFS--ND----AKFLFLCTGNFVKVYSTATGECITSLEDHT-APLTSVIVLPS-----SEN--ANYLIVCSLDGTIRV 86 (792)
T ss_pred ccccc--cC----CcEEEEeeCCEEEEEecchHhhhhhccccc-CccceeeecCC-----Ccc--ceEEEEEecCccEEE
Confidence 33578 88 889999999999999999999999887654 47999998854 221 126677788999999
Q ss_pred EEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe-CCCcEE-EEecCCCceEE-----EE-
Q 003208 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIR-VWDISNSSIIL-----EV- 173 (839)
Q Consensus 102 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~-~d~~i~-vwd~~~~~~~~-----~~- 173 (839)
||... ..++.++..+ .+|.++.+.|.-.+...++..+ .|..+. ........... +.
T Consensus 87 wd~~~---------------~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~ 150 (792)
T KOG1963|consen 87 WDWSD---------------GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD 150 (792)
T ss_pred ecCCC---------------cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc
Confidence 99985 3444444332 2344444433100111122111 111110 00011111110 00
Q ss_pred -------ecC--CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 174 -------HSP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 174 -------~~~--~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
..+ ..++++ ++.+. +..-..+..+.+|+..... .
T Consensus 151 ~~~~d~~~~~~~~~~I~~-------~~~ge-~~~i~~~~~~~~~~v~~~~--~--------------------------- 193 (792)
T KOG1963|consen 151 SAKGDFLKEHQEPKSIVD-------NNSGE-FKGIVHMCKIHIYFVPKHT--K--------------------------- 193 (792)
T ss_pred ccchhhhhhhcCCccEEE-------cCCce-EEEEEEeeeEEEEEecccc--e---------------------------
Confidence 001 122222 23333 2333345667778776110 0
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEE
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~ 322 (839)
.......-..|...+++.+++|++++++++..||.|.+|.--.... ... ....+.-|...|.+++|+ |.+|+
T Consensus 194 ~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----~~~-t~t~lHWH~~~V~~L~fS~~G~~Ll 267 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----DSE-TCTLLHWHHDEVNSLSFSSDGAYLL 267 (792)
T ss_pred eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----ccc-cceEEEecccccceeEEecCCceEe
Confidence 0000111134777799999999999999999999999997544211 011 113667788999999998 89999
Q ss_pred EEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcce
Q 003208 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEI 400 (839)
Q Consensus 323 s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (839)
|||..|.+.+|.+ +++ .+-+..-. .+|..+.++||+.+.+....|+.|.+..... ....++.+-...
T Consensus 268 SGG~E~VLv~Wq~~T~~-kqfLPRLg-s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~--------- 336 (792)
T KOG1963|consen 268 SGGREGVLVLWQLETGK-KQFLPRLG-SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP--------- 336 (792)
T ss_pred ecccceEEEEEeecCCC-cccccccC-CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC---------
Confidence 9999999999999 444 33333334 4899999999999999999999999998743 222222221100
Q ss_pred EEeecCCCccceeeccCCCcceEEEEEec-CCeEEEEeccceEEEEEecCCCCceeEEEee-ecCCCc----eEEeeecC
Q 003208 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-VSEGMP----IICMDLLS 474 (839)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~~~~~----v~~~~~~~ 474 (839)
.|.. -....+..+.+++.| -+.++.-+..|.+..|++.......--++.. ....+. +...++..
T Consensus 337 ----~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 337 ----TPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred ----Cccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 0000 011224567777887 4567777788888888887665432111111 111111 11111111
Q ss_pred CCCCCCCCCCcEEEEeCC----------CccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCC
Q 003208 475 NEPKYPCGIDDWVALGDG----------KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPK 544 (839)
Q Consensus 475 ~~~~~~~~~~~~l~~g~~----------dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 544 (839)
+ ..+.++++... .-.+++|...... ....+..+...+++.....+..+..+.....++++.|
T Consensus 407 ~------~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~--kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 407 S------RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS--KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred h------ccceEEEEeeeeehhhhccCceEEEEEEEEcCCc--ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 1 12356665432 2367788876543 2333333333334433333222222333378899999
Q ss_pred CcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 545 GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 545 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
|.+++|-+.+.+. ..+....+.+..+..| |..++++++||.||.+|++| .+++|.|||...
T Consensus 479 g~~KiW~~~~~~n--~~k~~s~W~c~~i~sy---~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 479 GDFKIWVFTDDSN--IYKKSSNWTCKAIGSY---HKTPITALCFSQDGSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred CeEEEEEEecccc--cCcCccceEEeeeecc---ccCcccchhhcCCCcEEEEe-cCCEEEEecCCC
Confidence 9999999965432 1122234445544444 78999999999999888655 688999999885
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=3.4e-19 Score=166.92 Aligned_cols=308 Identities=17% Similarity=0.245 Sum_probs=217.1
Q ss_pred EEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEecc--CCCcceE
Q 003208 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--RLSHWVF 136 (839)
Q Consensus 59 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~ 136 (839)
.++..+..+|.+++|.+.- .-+- ...+++.|.+.+.+|....+. -...++.+. .|.....
T Consensus 32 ~l~ed~~~~I~gv~fN~~~---~~~e---~~vfatvG~~rvtiy~c~~d~------------~ir~lq~y~D~d~~Esfy 93 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFL---GCDE---PQVFATVGGNRVTIYECPGDG------------GIRLLQSYADEDHDESFY 93 (385)
T ss_pred ehhccCCCccceeeeehhc---CCCC---CceEEEeCCcEEEEEEECCcc------------ceeeeeeccCCCCCcceE
Confidence 3444455679999998431 1111 268889999999999986432 023444442 3667778
Q ss_pred EEEEeeccC-CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 137 DVCFLKVCN-GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 137 ~~~~~~~~~-~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
.++|.-... ...+||.|+.-|.|+|.|+.+++....+.++... +..+.++ +.+.++|++++.|..|++|+++
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s-INeik~~--p~~~qlvls~SkD~svRlwnI~---- 166 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS-INEIKFH--PDRPQLVLSASKDHSVRLWNIQ---- 166 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc-chhhhcC--CCCCcEEEEecCCceEEEEecc----
Confidence 888876322 2458899999999999999999998888766543 4556664 3456799999999999999999
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC-
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK- 291 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~- 291 (839)
+..++..+ .||.+.|.++.|++++.+|+||+.|.++++|++...+..
T Consensus 167 -----------------------------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 167 -----------------------------TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred -----------------------------CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 77777766 479999999999999999999999999999999844321
Q ss_pred ---CC-------------CCceeeece-EeeccccceEEeEECCCEEEEEeCCCeEEEEcC-C-C-------------ce
Q 003208 292 ---DS-------------DSIEEVGSS-VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D-G-------------KQ 339 (839)
Q Consensus 292 ---~~-------------~~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~-~-------------~~ 339 (839)
.+ .....+..+ +..-|...|-|+.|-++++++-+.++.|..|.. . + ..
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceee
Confidence 00 000111101 344688889999999999999999999999987 2 1 12
Q ss_pred EEEeecccCCceEEEEE--ccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccC
Q 003208 340 LKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (839)
Q Consensus 340 ~~~~~~h~~~~i~~~~~--~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (839)
+.++..... .||-+.| +|-+++||.|...|.|.+||++......... + .-..
T Consensus 298 ~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt---------------l----------~~s~ 351 (385)
T KOG1034|consen 298 LGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT---------------L----------THSK 351 (385)
T ss_pred eeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce---------------E----------Eecc
Confidence 344455555 4887765 5667899999999999999996532211000 0 0011
Q ss_pred CCcceEEEEEecCCeEE-EEeccceEEEEE
Q 003208 418 KSEYVRCLHLTSEDTLY-IATNHGYLYHTK 446 (839)
Q Consensus 418 ~~~~v~~~~~~~~~~~~-~~~~~g~i~~~~ 446 (839)
....|+..+|+.|+.++ +.+.++.+.+|+
T Consensus 352 ~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 352 SGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 22469999999998655 456778887664
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.4e-19 Score=178.78 Aligned_cols=293 Identities=16% Similarity=0.213 Sum_probs=214.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.+.|.||... |. +.+|++|+ ||+|+||.+.+|+.+++++. .+ .|.+|+|+|. ++. .+|+++
T Consensus 399 Htg~Vr~iSvd--p~----G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~P~-----~~~----~vLAvA 461 (733)
T KOG0650|consen 399 HTGLVRSISVD--PS----GEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWNPL-----SDL----CVLAVA 461 (733)
T ss_pred cCCeEEEEEec--CC----cceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEecCC-----CCc----eeEEEE
Confidence 88999999999 88 89999999 89999999999999999985 33 5999999944 332 566666
Q ss_pred cCcEEEEEEeeccCC-------------CCCC--------CCCcccccee-eeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 95 GEKRVKLFELNFELS-------------PNSQ--------YQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~-------------~~~~--------~~~~~~~~~~-~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
-+..+.|.+...+.. +... +..+....++ -+...-.|...|..+.|+- .|+||++
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYlat 538 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLAT 538 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEEE
Confidence 555566666543310 0000 0010000011 1233345888999999999 9999998
Q ss_pred EeC---CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 153 GCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 153 ~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
... ...|.|.++.......-++ ..+..+..+.|+ |...++++++. ..|++||+.
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FH---Ps~p~lfVaTq-~~vRiYdL~------------------ 595 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFH---PSKPYLFVATQ-RSVRIYDLS------------------ 595 (733)
T ss_pred eccCCCcceEEEEecccccccCchh-hcCCceeEEEec---CCCceEEEEec-cceEEEehh------------------
Confidence 654 3568888886654432222 122334556665 44456666554 789999998
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (839)
....+..+......|..++.+|.|..|+.++.|+.+..+|+.-.... .+ .+..|..
T Consensus 596 ---------------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP----yk-----~lr~H~~ 651 (733)
T KOG0650|consen 596 ---------------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP----YK-----TLRLHEK 651 (733)
T ss_pred ---------------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch----hH-----Hhhhhhh
Confidence 55566666666788999999999999999999999999999876431 22 7788999
Q ss_pred ceEEeEECC--CEEEEEeCCCeEEEEcC---C-------CceEEEeecccCC---ceEEEEEccCCCEEEEEeCCCcEEE
Q 003208 310 RVWDCCLTD--SFIITAGEDCTCRVWGS---D-------GKQLKMIKEHIGR---GIWRCLYDSLSSLLVTAGFDSAIKV 374 (839)
Q Consensus 310 ~v~~~~~~~--~~l~s~~~dg~i~vw~~---~-------~~~~~~~~~h~~~---~i~~~~~~~~~~~l~t~~~dg~i~i 374 (839)
.+++++|++ .++++|+.||++.|+.- + --+++.+++|... +|....|+|...+|+++|.||+|++
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 999999995 78999999999999863 1 1356777777541 4788889999999999999999999
Q ss_pred E
Q 003208 375 H 375 (839)
Q Consensus 375 w 375 (839)
|
T Consensus 732 f 732 (733)
T KOG0650|consen 732 F 732 (733)
T ss_pred e
Confidence 8
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=3.9e-19 Score=166.50 Aligned_cols=323 Identities=14% Similarity=0.182 Sum_probs=218.9
Q ss_pred eeeeeeEEEEecCCCCCCCcc-eEEEeeCCeeEEEECCCCe---eeeEEeee-cCceEEeEEecccccccCCCccceeeE
Q 003208 16 YLGEISALCFVHLPSHLSSLP-FLLAGSGSQVLLYDLEAGT---LIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~-~l~~g~~~~v~iwd~~~~~---~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
|..+|..++|....+ -+.. .+++..+..+.||+....- .++...-. +...-..++|+.. ..++. .+
T Consensus 37 ~~~~I~gv~fN~~~~--~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~~---p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLG--CDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTGN---PF 107 (385)
T ss_pred CCCccceeeeehhcC--CCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCCC---ee
Confidence 678899999982111 1233 4444457899999986433 33333222 2334556666622 12232 56
Q ss_pred EEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 91 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
++++| -|.|+|.|+.. .+....+.+|.+.|+.+.++| .+.++|++++.|..||+||+++..+
T Consensus 108 la~~G~~GvIrVid~~~---------------~~~~~~~~ghG~sINeik~~p--~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVS---------------GQCSKNYRGHGGSINEIKFHP--DRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecch---------------hhhccceeccCccchhhhcCC--CCCcEEEEecCCceEEEEeccCCeE
Confidence 66665 69999999975 567788999999999999999 2457899999999999999999999
Q ss_pred EEEEec--CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 170 ILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 170 ~~~~~~--~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
+..+.+ .++..+.++.+ +.++.+|++++.|.+|++|++...+...+......++++....+..+.. ..-
T Consensus 171 v~VfGG~egHrdeVLSvD~---~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~------~~f 241 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDF---SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK------THF 241 (385)
T ss_pred EEEecccccccCcEEEEEE---cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc------ccc
Confidence 988864 34677889888 7889999999999999999998544443333333333333221111110 011
Q ss_pred eeE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC-----CC-CCceeeeceEeeccccceEEeEEC---
Q 003208 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-----DS-DSIEEVGSSVLYGHNARVWDCCLT--- 317 (839)
Q Consensus 248 ~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~-~~~~~~~~~~~~~h~~~v~~~~~~--- 317 (839)
+.. ...-|.+.|-|+.|- |++++|-|-++.|..|....-+.. .+ .....+ ..+.-....||-+.|.
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~--~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL--GEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeee--eEeccCccceEEEEEeecH
Confidence 111 334689999999985 578999999999999988321110 00 001111 1333345678888886
Q ss_pred -CCEEEEEeCCCeEEEEcC-CCce--EEEee-cccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 318 -DSFIITAGEDCTCRVWGS-DGKQ--LKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 318 -~~~l~s~~~dg~i~vw~~-~~~~--~~~~~-~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
...|+.|.+.|.+.+||+ ...+ ..++. ...++.|...+|+.|+.+|+....|++|.-||.
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 589999999999999999 3222 22222 222346888999999999999999999999986
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-18 Score=161.73 Aligned_cols=288 Identities=14% Similarity=0.170 Sum_probs=201.3
Q ss_pred eeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
-+|+.|+ +- |.+|++|. +|.|.|||..|...-+.+..|-. +|.+++|| +||. .+++++.|.+
T Consensus 26 a~~~~Fs--~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS-------~dgr---~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFS--RW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWS-------RDGR---KLLTSSRDWS 88 (405)
T ss_pred cceEEec--cC----cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEec-------CCCC---EeeeecCCce
Confidence 6799999 87 89999999 99999999999887677777655 79999999 9995 6777788999
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCc
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~ 178 (839)
|.+||+..+ .+++.++ ...+|+.+.|+|- +.+..+..--+..-.+-++.++.....-.....
T Consensus 89 i~lwDl~~g---------------s~l~rir-f~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 89 IKLWDLLKG---------------SPLKRIR-FDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred eEEEeccCC---------------CceeEEE-ccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence 999999863 3444443 5678999999992 233333333333344444443221111111112
Q ss_pred eeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC-C
Q 003208 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-G 257 (839)
Q Consensus 179 ~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~ 257 (839)
..-.+..--.+.+.|++|++|+..|.+.+++.. +.++++.++-.. .
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~---------------------------------t~e~vas~rits~~ 197 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE---------------------------------TLECVASFRITSVQ 197 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecc---------------------------------hheeeeeeeechhe
Confidence 111222211136789999999999999999998 777887777555 7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC-CCCCceeeeceEeec--cccceEEeEEC--CCEEEEEeC-CCeEE
Q 003208 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-DSDSIEEVGSSVLYG--HNARVWDCCLT--DSFIITAGE-DCTCR 331 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~~~-dg~i~ 331 (839)
.|..+.++..|+.|+.-+.|+.||.|++..-... ....+++.. .+.. ....=.+++|+ +.+++.++. -..++
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~--K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH--KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH--HHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 8999999999999999999999999998742110 000011000 0000 11112356777 677776653 46799
Q ss_pred EEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 332 vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
||.. .|..++.+.+..+.....+.|+|-...+++- ..|.+++|...
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9999 8999999998886567788999987777776 67899999873
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.1e-20 Score=190.13 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=196.1
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce----EEEEecCCceeEEEE-eeccCCccceEEEEeecCCeEEEE
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSM-KLWGDNLEALRIASGTIYNEIIVW 208 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~s~-~~~~~~~~~~~l~sg~~dg~i~vw 208 (839)
...+|...+ +...|+.++. ..+.|+.+..... ........ ...+++ ..-+...+.++||+++..|.|.+|
T Consensus 41 ~~nAIs~nr---~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kq-n~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 41 KANAISVNR---DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQ-NKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccceEeecC---CcceeEEecc-cceeeEeeCcccCCcceeeeccccc-ceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 345666677 7777777664 4677777653221 11111111 122222 121225677899999999999999
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccc
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~ 287 (839)
|+... ...+.+..+..|+..+.++.|++ ...+|+|||.||+|++||++.
T Consensus 116 dlnk~------------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 116 DLNKS------------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ecCcc------------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 99810 02456667889999999999998 457899999999999999998
Q ss_pred CccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEEEEEccCCCE
Q 003208 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~~~~~~~~~~ 362 (839)
... . .+..+....|..++|+ ++.++++...|.+++||+ ..++..++..|.+ +|.++.|+|++.+
T Consensus 166 ~~S-----~-----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 166 KKS-----K-----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREW 234 (839)
T ss_pred ccc-----c-----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCce
Confidence 765 2 2667788889999999 589999999999999999 5677888999999 8999999999999
Q ss_pred EEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeE-EEEe---c
Q 003208 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIAT---N 438 (839)
Q Consensus 363 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~---~ 438 (839)
|||||.|+.|+||++.+.... .+..+. ...++.+++|-|+... |+++ .
T Consensus 235 lATGGRDK~vkiWd~t~~~~~---------------~~~tIn-------------Tiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRAK---------------PKHTIN-------------TIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred eeecCCCccEEEEeccCCCcc---------------ceeEEe-------------ecceeeeeeeccCccchhhhhhccc
Confidence 999999999999999653221 111221 1136899999997643 3333 2
Q ss_pred cceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcC
Q 003208 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (839)
Q Consensus 439 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~ 503 (839)
+-.|..|++..+-... ..+. .+...+..+.+.. .+...+.+++.||.+..-.+++
T Consensus 287 dtsV~VWDvrRPYIP~--~t~~-eH~~~vt~i~W~~-------~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPY--ATFL-EHTDSVTGIAWDS-------GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cceEEEEeeccccccc--eeee-ccCccccceeccC-------CCceeeEeecCccHHHHhhhhc
Confidence 3445656554432211 1222 2233344443322 3456888999999887655544
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=6.9e-19 Score=171.60 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=192.9
Q ss_pred cceEEEee--C--Ce--eEEEECCCCeeeeEEeeecC----ceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEE
Q 003208 35 LPFLLAGS--G--SQ--VLLYDLEAGTLIRPFQVFHG----IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFE 103 (839)
Q Consensus 35 ~~~l~~g~--~--~~--v~iwd~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~ 103 (839)
..+++++- + .. |+||+-. + ..+.+||. ....|++|.........-| .++|++. +..|.|||
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~--e--~nlYvHHD~ilpafPLC~ewld~~~~~~~~g----NyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEE--E--ENLYVHHDFILPAFPLCIEWLDHGSKSGGAG----NYVAIGTMDPEIEIWD 208 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCC--C--cceeEecceeccCcchhhhhhhcCCCCCCCc----ceEEEeccCceeEEec
Confidence 57888876 2 34 5555533 2 12333332 2345666652211111222 5777765 89999999
Q ss_pred eeccCCCCCCCCCcc---c---cceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC
Q 003208 104 LNFELSPNSQYQPET---C---VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 104 ~~~~~~~~~~~~~~~---~---~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
++....-.-.+.-.. . ...+.-....+|++.|.++.|+. .-.+.||+||.|.+|++||+.++++...+..+
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~- 285 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTVKLWDVDTGKPKSSITHH- 285 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceEEEEEcCCCCcceehhhc-
Confidence 985331000000000 0 00111223457999999999987 24568999999999999999999999888744
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
...+.++.|+ +....+|++|+.|++|.+.|++. .......-.-.+
T Consensus 286 ~k~Vq~l~wh--~~~p~~LLsGs~D~~V~l~D~R~---------------------------------~~~s~~~wk~~g 330 (463)
T KOG0270|consen 286 GKKVQTLEWH--PYEPSVLLSGSYDGTVALKDCRD---------------------------------PSNSGKEWKFDG 330 (463)
T ss_pred CCceeEEEec--CCCceEEEeccccceEEeeeccC---------------------------------ccccCceEEecc
Confidence 3446677776 44578999999999999999982 111111122457
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEE
Q 003208 258 SIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (839)
Q Consensus 258 ~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw 333 (839)
.|-.++|.|.. ..++++..||+|+-+|++..... + +.+..|..+|.++.++ +++++|++.|+.|++|
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~----v-----wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP----V-----WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----e-----eEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 89999999865 56778889999999999986431 2 5888999999999998 7899999999999999
Q ss_pred cCCCceEEEeecc---cCCceEEEEEccCC-CEEEEEeCCCcEEEEecC
Q 003208 334 GSDGKQLKMIKEH---IGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 334 ~~~~~~~~~~~~h---~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~ 378 (839)
++..........| -+ ...|+++.|+- .+++.||..+.+++||+.
T Consensus 402 ~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred eecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecc
Confidence 9943222222222 23 25567777765 467888888899999984
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=6.1e-18 Score=172.27 Aligned_cols=454 Identities=13% Similarity=0.186 Sum_probs=283.7
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
.|+.++|. ||| ..++...+..+.+||... +.+++++++|.+.|+|++|+. +
T Consensus 14 ci~d~afk-------PDG----sqL~lAAg~rlliyD~nd---------------G~llqtLKgHKDtVycVAys~---d 64 (1081)
T KOG1538|consen 14 CINDIAFK-------PDG----TQLILAAGSRLLVYDTSD---------------GTLLQPLKGHKDTVYCVAYAK---D 64 (1081)
T ss_pred chheeEEC-------CCC----ceEEEecCCEEEEEeCCC---------------cccccccccccceEEEEEEcc---C
Confidence 58999999 999 677777788899999986 568899999999999999999 9
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCcc
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
|+++|+|+.|..|.+|+..-. ..++..+...+-+|.| +|-...+++++- ...-+|+..
T Consensus 65 GkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsF---NP~~h~LasCsL-sdFglWS~~--------------- 122 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSF---NPITHQLASCSL-SDFGLWSPE--------------- 122 (1081)
T ss_pred CceeccCCCceeEEEeccccc---ceeeeccCCeeeEeec---CchHHHhhhcch-hhccccChh---------------
Confidence 999999999999999986432 2233333444556665 677778887754 344567655
Q ss_pred CCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec
Q 003208 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (839)
. +.+... .....|.+.+|..||.+++.|-.||+|.+-+-...+. .. + ....|
T Consensus 123 ------------------q-K~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-----~~-I--~Rpgg 174 (1081)
T KOG1538|consen 123 ------------------Q-KSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-----VK-I--ERPGG 174 (1081)
T ss_pred ------------------h-hhHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-----eE-E--eCCCC
Confidence 1 111111 1235688899999999999999999999986554433 11 1 12345
Q ss_pred cccceEEeEECC-------CEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 307 HNARVWDCCLTD-------SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 307 h~~~v~~~~~~~-------~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..++||+++|++ ..++......++..+.++|+.+.+-+.-.- ...|+.+.++|.+++.||.|+.+.+|..++
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC-CchhheeccCCcEEEEccCCCceEEEeecC
Confidence 788999999982 578899999999999999988876555444 256899999999999999999999998766
Q ss_pred cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEecCCCCc-----
Q 003208 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSV----- 453 (839)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~~~~----- 453 (839)
-.+.++. ..+.+|-.++..|++ .+.+++.+|.+-.+++-.....
T Consensus 254 vrLGTvg------------------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~ 303 (1081)
T KOG1538|consen 254 VRLGTVG------------------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKD 303 (1081)
T ss_pred eEEeecc------------------------------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHH
Confidence 4433322 223578888899988 4566788998866654321100
Q ss_pred e--eEEE-----ee---ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeE
Q 003208 454 N--WNKI-----LQ---VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQ 523 (839)
Q Consensus 454 ~--~~~~-----~~---~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (839)
+ ++.. .+ ......+.|-++-..- +. -.+.+++--.+ +|.+|++.++...+... +........
T Consensus 304 RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKi---ai-YrnrLAVQLpe-ki~iYel~se~~~~mhY---~v~ekI~kk 375 (1081)
T KOG1538|consen 304 RYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKI---AI-YRNRLAVQLPE-KILIYELYSEDLSDMHY---RVKEKIIKK 375 (1081)
T ss_pred hhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHH---Hh-hhhhheecccc-eEEEEeccccccccchh---HHHHHHHhh
Confidence 0 0000 00 0001122222221110 00 12445554444 78899987765443211 000000000
Q ss_pred EeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCcc
Q 003208 524 LLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN 603 (839)
Q Consensus 524 ~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~ 603 (839)
.....+ -..++.++.+ .+.++..+|...-++ .++.+.-.-.|.+.-+++ +-..-|++|-.+|.
T Consensus 376 f~cSLl--VVc~~HiVlC-qekrLqClDF~Gvk~-------ReW~M~S~iRYikV~GGP-------~gREgL~vGlknGq 438 (1081)
T KOG1538|consen 376 FECSLL--VVCANHIVLC-QEKRLQCLDFSGVKE-------REWQMESLIRYIKVIGGP-------PGREGLLVGLKNGQ 438 (1081)
T ss_pred ccceEE--EEEcCeEEEE-cccceeeecccchhh-------hhhhHHHHHHhhhhhcCC-------CCcceeEEEecCCc
Confidence 000000 0122334333 567788888875432 233333211222111111 12347789999998
Q ss_pred EEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCc
Q 003208 604 LVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 604 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
|+---+++ .+ |+-... ....|.++..+ .....|++....++..++|+.++..
T Consensus 439 V~kiF~dN------------~~-PiLl~~---~~tAvrClDIN---A~R~kLAvVDD~~~c~v~DI~t~el 490 (1081)
T KOG1538|consen 439 VLKIFVDN------------LF-PILLLK---QATAVRCLDIN---ASRKKLAVVDDNDTCLVYDIDTKEL 490 (1081)
T ss_pred EEEEEecC------------Cc-hhheec---ccceeEEeecc---CCcceEEEEccCCeEEEEEccCCce
Confidence 76433432 22 221111 11346666666 6778899999999999999998753
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-18 Score=170.05 Aligned_cols=288 Identities=11% Similarity=0.153 Sum_probs=205.9
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC--ceEEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEE
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWK 209 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~ 209 (839)
+.|+++.|+| ...+|++|+.|++++||.+... ..+..+.-. ++.+.++.| .++|. .+++++....++.||
T Consensus 214 ~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f---~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEF---APNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CCceEEEecC---CCceEEEecCCCcEEEEEecCccChhheeeeec-cCccceeee---cCCCceEEEecccceEEEEee
Confidence 6899999999 9999999999999999998532 233333321 233445555 46777 899999999999999
Q ss_pred eeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
+...+ ...+..+.|++ ..+.....++++++|+..+..|.|.+....++
T Consensus 287 le~ak-------------------------------~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 287 LETAK-------------------------------VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccccc-------------------------------cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 98322 22333344554 45667788999999999999999999998887
Q ss_pred ccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEE
Q 003208 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t 365 (839)
+. .....-.+.|..+.|+ +..|+..+.+|.|.+||+ ...++.++....+-.-++++.++++.+||+
T Consensus 336 el-----------i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 336 EL-----------ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred hh-----------hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence 66 1333446678899997 688889999999999999 667788887655433467888899999999
Q ss_pred EeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccc---eE
Q 003208 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG---YL 442 (839)
Q Consensus 366 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g---~i 442 (839)
|+..|.|.|||.+.... ...++++...+.-...|+.+.|+++..+++.++.. .+
T Consensus 405 GS~~GiVNIYd~~s~~~-----------------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal 461 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFA-----------------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL 461 (514)
T ss_pred ccCcceEEEeccchhhc-----------------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence 99999999999754211 11112222233333569999999999888765443 34
Q ss_pred EEEEecCCCCce-eEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEc
Q 003208 443 YHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 443 ~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
.++.+.+..... |... ...-+.+.|++++|.. .++|+|...|++.+|.+.
T Consensus 462 rLVHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~s--------G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 462 RLVHVPSCTVFSNFPTS--NTKVGHVTCMAFSPNS--------GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEeccceeeeccCCCC--CCcccceEEEEecCCC--------ceEEeecCCCceeeEeec
Confidence 333333322111 3211 2234568899997754 899999999999999874
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=9.7e-18 Score=155.86 Aligned_cols=266 Identities=17% Similarity=0.216 Sum_probs=183.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC----eeeeEEeeecCceEEeEEecccccccCCCccceeeE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
|..=|+|+.|. +- |+.+++++ |.+|+|||..+. ..-...+.|.+ .|..|.|... .-|+ .+
T Consensus 12 h~DlihdVs~D--~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhP-----EfGq---vv 76 (361)
T KOG2445|consen 12 HKDLIHDVSFD--FY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHP-----EFGQ---VV 76 (361)
T ss_pred Ccceeeeeeec--cc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCc-----cccc---eE
Confidence 56679999998 76 55556555 999999996543 35556677666 6999999742 3342 44
Q ss_pred EEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE
Q 003208 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (839)
Q Consensus 91 l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~ 170 (839)
.+++-|+++.||.-....... ...++....++...+..|+++.|.|.. -|-.||+++.||.+|||+.-+.-.+
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP~h-lGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAPKH-LGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred EEEecCCceeeeeeccccccc------ccceeEEEEEeecCCcceeEEEecchh-cceEEEEeccCcEEEEEecCCcccc
Confidence 455679999999864222100 012367778888889999999999932 4567899999999999988654332
Q ss_pred E------EEe------cCCceeEEEEeeccCCccceEEEEeecC-----CeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 171 L------EVH------SPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 171 ~------~~~------~~~~~~~~s~~~~~~~~~~~~l~sg~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
. .++ +......+++.+...-....+||.|+.+ +.++||....+.
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------------------- 210 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG------------------- 210 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-------------------
Confidence 2 222 1112223344442222345678888765 578888765110
Q ss_pred ceeeEeecccccceeeEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcccCcc-------CC-----CCCce
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYW-------KD-----SDSIE 297 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~d~~i~iwd~~~~~~-------~~-----~~~~~ 297 (839)
..-..+..+.+|.++|+.|+|.|+- ..|++++.|| |+||.+..... .. ...++
T Consensus 211 ----------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 211 ----------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ----------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 0234566778999999999999953 5799999999 99999984221 01 11122
Q ss_pred eeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC
Q 003208 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 335 (839)
.+ ..+.+|.+.||.+.|+ |..|.+.|.||.||+|..
T Consensus 280 ~v--s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KV--SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Ee--eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 22 3577899999999998 899999999999999987
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=170.75 Aligned_cols=281 Identities=14% Similarity=0.206 Sum_probs=205.6
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
.+|++|.|+ |... .+++++-|++++||.++-.. ...++.+.--.-+|.+.+|.|
T Consensus 214 ~~I~sv~FH-------p~~p---lllvaG~d~~lrifqvDGk~-------------N~~lqS~~l~~fPi~~a~f~p--- 267 (514)
T KOG2055|consen 214 GGITSVQFH-------PTAP---LLLVAGLDGTLRIFQVDGKV-------------NPKLQSIHLEKFPIQKAEFAP--- 267 (514)
T ss_pred CCceEEEec-------CCCc---eEEEecCCCcEEEEEecCcc-------------ChhheeeeeccCccceeeecC---
Confidence 369999999 6542 45555559999999998544 455666666678999999999
Q ss_pred CCc-EEEEEeCCCcEEEEecCCCceEEE--EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCC
Q 003208 146 GNR-SLAIGCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (839)
Q Consensus 146 ~~~-~las~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~ 222 (839)
+|. .+++++.......||+.+.+.... ..+... -++..+..++++.+|+..+..|.|.+....
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~---~~~e~FeVShd~~fia~~G~~G~I~lLhak----------- 333 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE---KSMERFEVSHDSNFIAIAGNNGHIHLLHAK----------- 333 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCccc---chhheeEecCCCCeEEEcccCceEEeehhh-----------
Confidence 888 889999999999999988765432 222221 133334447889999999999999999887
Q ss_pred CCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeece
Q 003208 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 302 (839)
++..+..++ -++.|..++|+.+++.|++++.+|.|.+||++...+ ..
T Consensus 334 ----------------------T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-----~~----- 380 (514)
T KOG2055|consen 334 ----------------------TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-----LH----- 380 (514)
T ss_pred ----------------------hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-----EE-----
Confidence 666666665 568899999999999999999999999999998765 21
Q ss_pred Eeeccccce----EEeEECCCEEEEEeCCCeEEEEcCC-------CceEEEeecccCCceEEEEEccCCCEEEEEeC--C
Q 003208 303 VLYGHNARV----WDCCLTDSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF--D 369 (839)
Q Consensus 303 ~~~~h~~~v----~~~~~~~~~l~s~~~dg~i~vw~~~-------~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~--d 369 (839)
...-.+.| .|++..+.++++|+..|.|.|||.+ .+++..+..-.. .|++|.|++++++|+.++. +
T Consensus 381 -rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~k 458 (514)
T KOG2055|consen 381 -RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKK 458 (514)
T ss_pred -EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccc
Confidence 11122222 2333448999999999999999962 356777766666 6999999999998887774 6
Q ss_pred CcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEe
Q 003208 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKL 447 (839)
Q Consensus 370 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~ 447 (839)
..+|+-.+.... +|+ ..|.. ...-+.|+|++|+|.+ .+.++...|.+..|++
T Consensus 459 nalrLVHvPS~T------------------VFs-NfP~~-------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 459 NALRLVHVPSCT------------------VFS-NFPTS-------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cceEEEecccee------------------eec-cCCCC-------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 788888774321 111 11211 1223569999999965 6666777888877665
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.6e-18 Score=181.18 Aligned_cols=251 Identities=12% Similarity=0.103 Sum_probs=176.7
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC-ccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEE
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~ 331 (839)
.+|+..-+.|+|.|+|++|++|+.||.|++|+.... .. .+ .+..+...|.+++...++|++|+.+++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----P~-----ti~~~g~~v~~ia~~s~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----PE-----TIDISGELVSSIACYSNHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----Cc-----hhhccCceeEEEeecccceEEeeccceEE
Confidence 368888999999999999999999999999998765 22 11 33337888999998888999999999999
Q ss_pred EEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCc
Q 003208 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (839)
Q Consensus 332 vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (839)
+|.+ +++.-..+....- ++..++++-+|++++.||.|-.|++.++... ....+
T Consensus 80 ~y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l------------------------ 134 (933)
T KOG1274|consen 80 RYKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL------------------------ 134 (933)
T ss_pred EeeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccccchheee------------------------
Confidence 9999 5554434444444 7999999999999999999999999887431 11111
Q ss_pred cceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEE
Q 003208 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (839)
Q Consensus 410 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 489 (839)
.+| .+++.+++++|.. ++||+
T Consensus 135 ------rgh---------------------------------------------~apVl~l~~~p~~--------~fLAv 155 (933)
T KOG1274|consen 135 ------RGH---------------------------------------------DAPVLQLSYDPKG--------NFLAV 155 (933)
T ss_pred ------ccc---------------------------------------------CCceeeeeEcCCC--------CEEEE
Confidence 122 3344444444332 56666
Q ss_pred eCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCcccee
Q 003208 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (839)
Q Consensus 490 g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 569 (839)
.+-||.|++|+++++.+........+.. +....-.....+++|++..|+....|+.|++|+....+....+
T Consensus 156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n-~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-------- 226 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQDGILSKTLTGVDKDN-EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-------- 226 (933)
T ss_pred EecCceEEEEEcccchhhhhcccCCccc-cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee--------
Confidence 6667777777776554432221111111 1110111223678999888888889999999999987642111
Q ss_pred eeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 570 FLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 570 ~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
. ..-+...++++.|||+|+|||+++.+|.|.|||++.
T Consensus 227 r-----~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 R-----DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred c-----ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 0 112344499999999999999999999999999984
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=8.8e-19 Score=167.07 Aligned_cols=252 Identities=17% Similarity=0.263 Sum_probs=172.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC----------------CeeeeEEeeecCceEEeEEeccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------------GTLIRPFQVFHGIRLHGISCNFINC 78 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~----------------~~~~~~~~~~~~~~v~~i~~~~~~~ 78 (839)
|.+.|.-+..+.+++ ..+.++=+ .|.|+|||+.. .+++.++..|+. .=.+|+|||.
T Consensus 150 h~g~~NRvr~~~~~~----~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~-- 222 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGN----EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPI-- 222 (440)
T ss_pred cccccceeeecccCC----cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeecccc--
Confidence 666677777662222 33444433 69999999742 245667776654 4678999943
Q ss_pred ccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceee-eEeccCCCcceEEEEEeeccCCCcEEEEEeCC
Q 003208 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSL-VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d 156 (839)
..| .++++. -+.|++|...++. ++. ...+.+|+..|-+++|+| .....+|+|+.|
T Consensus 223 ---~~g-----~LlsGDc~~~I~lw~~~~g~-------------W~vd~~Pf~gH~~SVEDLqWSp--tE~~vfaScS~D 279 (440)
T KOG0302|consen 223 ---KTG-----RLLSGDCVKGIHLWEPSTGS-------------WKVDQRPFTGHTKSVEDLQWSP--TEDGVFASCSCD 279 (440)
T ss_pred ---ccc-----ccccCccccceEeeeeccCc-------------eeecCccccccccchhhhccCC--ccCceEEeeecC
Confidence 232 233222 4789999988743 222 245678999999999999 356789999999
Q ss_pred CcEEEEecCCCc---eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 157 NSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 157 ~~i~vwd~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
++|+|||++.+. ++.+ +.+. +-+..+.+ +.+..+||+|+.||.++|||++.-+
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh~-sDVNVISW---nr~~~lLasG~DdGt~~iwDLR~~~------------------- 335 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAHN-SDVNVISW---NRREPLLASGGDDGTLSIWDLRQFK------------------- 335 (440)
T ss_pred ceEEEEEecCCCccceeEe-eccC-CceeeEEc---cCCcceeeecCCCceEEEEEhhhcc-------------------
Confidence 999999999873 2322 2222 23444444 4455599999999999999998211
Q ss_pred ceeeEeecccccceeeEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcccCccC------CCCCceeeeceEeec
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYG 306 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~ 306 (839)
..++++.++-|+.+|++|.|+|. ...|++++.|.+|.+||+.-..-. ....++.+.+..++-
T Consensus 336 -----------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 336 -----------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred -----------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 45789999999999999999994 467889999999999999653321 011122233334555
Q ss_pred c--ccceEEeEEC---CCEEEEEeCCCeEEEE
Q 003208 307 H--NARVWDCCLT---DSFIITAGEDCTCRVW 333 (839)
Q Consensus 307 h--~~~v~~~~~~---~~~l~s~~~dg~i~vw 333 (839)
| ...+..+.|+ +.++++.+.||. .||
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 5 3457788898 789999999984 444
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=4.8e-19 Score=180.03 Aligned_cols=329 Identities=12% Similarity=0.142 Sum_probs=197.3
Q ss_pred EEEEEcC---CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEc
Q 003208 260 FRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (839)
Q Consensus 260 ~~l~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 334 (839)
++..|++ ..+.|+.+.+||.|.++|....... .++........|...|..+.|. ...|++++.|.++++||
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 4566765 3457899999999999998765431 1111112566899999999998 47899999999999999
Q ss_pred C-CCceEEE--eecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCcc
Q 003208 335 S-DGKQLKM--IKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (839)
Q Consensus 335 ~-~~~~~~~--~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (839)
+ .++++.. +.+|.+ .|.+++|.|.. ..+++|+.||.|.|||++-.....++. +.
T Consensus 129 vk~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~-------------~~-------- 186 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE-------------FD-------- 186 (720)
T ss_pred eccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH-------------Hh--------
Confidence 9 6666655 889998 69999999876 578999999999999995432111110 00
Q ss_pred ceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEe
Q 003208 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (839)
Q Consensus 411 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g 490 (839)
..+.+..++.--..........+|. .........|+.+.+ .+...||++
T Consensus 187 ---------------------~~~~~~~n~~ptpskp~~kr~~k~k-A~s~ti~ssvTvv~f---------kDe~tlaSa 235 (720)
T KOG0321|consen 187 ---------------------NRIYGRHNTAPTPSKPLKKRIRKWK-AASNTIFSSVTVVLF---------KDESTLASA 235 (720)
T ss_pred ---------------------hhhhccccCCCCCCchhhccccccc-cccCceeeeeEEEEE---------eccceeeec
Confidence 0000000000000000000000110 000000111222222 244788888
Q ss_pred CC-CccEEEEEEcCCCCCCcce-ee-eEeeccceeEEee-EEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCcc
Q 003208 491 DG-KGNMTIVRVVGDVHTPQLS-FT-FTWSAGIERQLLG-TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (839)
Q Consensus 491 ~~-dg~i~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 566 (839)
+. |+.|++||+.........+ .. .+.. .+..+..+ +.++....|.+|++.+.|+.|++|++......... .
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~-t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~----~ 310 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYP-THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA----E 310 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCcc-CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh----h
Confidence 77 9999999997643321111 00 1111 11222222 12334445788888888999999999865321000 0
Q ss_pred ceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEE
Q 003208 567 NNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA 646 (839)
Q Consensus 567 ~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~ 646 (839)
....+...| -..-..|||+.+|++|+.|...++|.+... ..+...+. .|. -.|++++|.
T Consensus 311 ~sg~~~~sf-------~vks~lSpd~~~l~SgSsd~~ayiw~vs~~------------e~~~~~l~-Ght-~eVt~V~w~ 369 (720)
T KOG0321|consen 311 FSGKLNSSF-------YVKSELSPDDCSLLSGSSDEQAYIWVVSSP------------EAPPALLL-GHT-REVTTVRWL 369 (720)
T ss_pred ccCccccee-------eeeeecCCCCceEeccCCCcceeeeeecCc------------cCChhhhh-Ccc-eEEEEEeec
Confidence 000111111 112236799999999999999999999863 11222333 444 469999999
Q ss_pred eccCCceEEEeecCcCcEEEEEEecCC
Q 003208 647 KLRSNQTEIRSTGGDGCICYLEYDKDR 673 (839)
Q Consensus 647 ~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 673 (839)
++. -.-++|+++|..+++|++.++.
T Consensus 370 pS~--~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 370 PSA--TTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ccc--CCCceeeccCcceEEEeccCch
Confidence 743 3448888999999999997653
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.8e-18 Score=167.88 Aligned_cols=294 Identities=16% Similarity=0.200 Sum_probs=205.1
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe----eeeEEeeecCceEEeEEecccccccCCCccceeeE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
+.++|++++|+ |. ...+++++|. .|.|-+||+.+.+ .+..+.. ++++|.+|.|+|. ... .+
T Consensus 185 ~~~Rit~l~fH--Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~-----n~s----~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFH--PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPA-----NTS----QI 250 (498)
T ss_pred cccceEEEEec--cc--CcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCC-----Chh----he
Confidence 67899999999 87 4457999999 8999999995221 2333333 4568999999955 222 78
Q ss_pred EEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce-
Q 003208 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (839)
Q Consensus 91 l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~- 169 (839)
++.+.||+|++-|++... .+.+..+..-..++..+.|+. +...++.+..=|...+||.++...
T Consensus 251 ~ssSyDGtiR~~D~~~~i-------------~e~v~s~~~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNI-------------SEEVLSLDTDNIWFSSLDFSA---ESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeeccCceeeeeeecchh-------------hHHHhhcCccceeeeeccccC---CCccEEEeecccceEEEEeecCCcc
Confidence 888999999999998643 445555555566788888887 666677777777999999987654
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
...+..+.. .+.++++. +....++++++.|++.+|||++.- .....++
T Consensus 315 ~~~~~lh~k-KI~sv~~N--P~~p~~laT~s~D~T~kIWD~R~l-----------------------------~~K~sp~ 362 (498)
T KOG4328|consen 315 YENLRLHKK-KITSVALN--PVCPWFLATASLDQTAKIWDLRQL-----------------------------RGKASPF 362 (498)
T ss_pred chhhhhhhc-ccceeecC--CCCchheeecccCcceeeeehhhh-----------------------------cCCCCcc
Confidence 333333443 45566663 455678999999999999999810 0011134
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc----cc--eEEeEEC--CCEE
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----AR--VWDCCLT--DSFI 321 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~----~~--v~~~~~~--~~~l 321 (839)
.....|...|.+..|||.+..|++.+.|..|+|||..--... ..+. ....|. .+ ..-..|. .+++
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~---~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPL---GTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCcc---ceeeccCcccccccchhheeCCCccEE
Confidence 445579999999999998888999999999999998411100 1111 111221 12 2234566 4789
Q ss_pred EEEeCCCeEEEEcC-CCceEEEeecccCCceEEE-EEccCCCEEE-EEeCCCcEEEEecC
Q 003208 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC-LYDSLSSLLV-TAGFDSAIKVHQFQ 378 (839)
Q Consensus 322 ~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~-~~~~~~~~l~-t~~~dg~i~iw~~~ 378 (839)
++|-.-..|-|+|- .++.+..+.......|.++ .|+|-+..++ .++..|.|.+|.-+
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99998899999999 4555777766555456664 6899887444 45557888888653
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.4e-20 Score=191.92 Aligned_cols=250 Identities=16% Similarity=0.280 Sum_probs=198.6
Q ss_pred ceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCC
Q 003208 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 36 ~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~ 113 (839)
.++..+. ...++|||.+. +-+|.. .|.++..- ..+ ..++++| +..+-+|.+...
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsa-av~~lk~~-------~s~----r~~~~Gg~~~k~~L~~i~kp------ 60 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSA-AVGCLKIR-------KSS----RSLVTGGEDEKVNLWAIGKP------ 60 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhh-hhceeeee-------ccc----eeeccCCCceeeccccccCC------
Confidence 3444444 66788888642 222222 24444432 222 4555555 677889988643
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA 193 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 193 (839)
..+..|.+|..+|.++.|++ ...+|++|+.+|+|++||++..+.++++.++... +.++.| .|-+
T Consensus 61 ---------~~i~S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-~~sv~f---~P~~ 124 (825)
T KOG0267|consen 61 ---------NAITSLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-ITSVDF---HPYG 124 (825)
T ss_pred ---------chhheeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccC-cceeee---ccce
Confidence 23345889999999999999 8999999999999999999999988888766543 345555 5888
Q ss_pred eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEE
Q 003208 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (839)
Q Consensus 194 ~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 273 (839)
.+.++|+.|..+.+||.+ ..-+.+.+.+|...|..++|+|+|+++++
T Consensus 125 ~~~a~gStdtd~~iwD~R---------------------------------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~ 171 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIR---------------------------------KKGCSHTYKSHTRVVDVLRLSPDGRWVAS 171 (825)
T ss_pred EEeccccccccceehhhh---------------------------------ccCceeeecCCcceeEEEeecCCCceeec
Confidence 999999999999999998 67788899999999999999999999999
Q ss_pred EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcCC-CceEEEeecccCCc
Q 003208 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRG 350 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~~-~~~~~~~~~h~~~~ 350 (839)
+++|.+++|||+..++. .. .+..|...+..+.|++ -++.+|+.|+++++||++ -+.+........ +
T Consensus 172 g~ed~tvki~d~~agk~-----~~-----ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~ 240 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKL-----SK-----EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-G 240 (825)
T ss_pred cCCcceeeeeccccccc-----cc-----ccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC-C
Confidence 99999999999988776 22 6778999999999984 578899999999999994 666766666665 6
Q ss_pred eEEEEEccCCCEEEEEeCC
Q 003208 351 IWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~d 369 (839)
|.+.+|+|++..+++|..+
T Consensus 241 v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 241 VRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeecCCceeeecCchh
Confidence 9999999999998888765
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=6.7e-17 Score=168.42 Aligned_cols=267 Identities=14% Similarity=0.129 Sum_probs=181.2
Q ss_pred ceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCC
Q 003208 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 36 ~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~ 113 (839)
.+++++. |+.|++||..+++.+..+..+. .+.+++|+ |+++ .++++ ..++.|++||...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~-------~dg~---~l~~~~~~~~~v~~~d~~~------- 62 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLS-------KDGK---LLYVCASDSDTIQVIDLAT------- 62 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEEC-------CCCC---EEEEEECCCCeEEEEECCC-------
Confidence 3555555 8999999999999888887543 37789999 8873 44444 4579999999875
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE-EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
++....+..+.. +..++|+| +++.+++ ++.++.|++||+.+.+.+..+..... ...+.+ +++
T Consensus 63 --------~~~~~~~~~~~~-~~~~~~~~---~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~---~~d 125 (300)
T TIGR03866 63 --------GEVIGTLPSGPD-PELFALHP---NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE--PEGMAV---SPD 125 (300)
T ss_pred --------CcEEEeccCCCC-ccEEEECC---CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC--cceEEE---CCC
Confidence 334444544443 56788999 8887654 45689999999998877776653321 223444 588
Q ss_pred ceEEEEeecCC-eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 193 ALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 193 ~~~l~sg~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
+.++++++.++ .+.+||.. ..+....+. ....+.+++|+|+++++
T Consensus 126 g~~l~~~~~~~~~~~~~d~~---------------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTK---------------------------------TYEIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCEEEEEecCCCeEEEEeCC---------------------------------CCeEEEEEE-cCCCccEEEECCCCCEE
Confidence 98998887765 46677876 333333322 22345789999999988
Q ss_pred EEE-eCCCcEEEEEcccCccCCCCCceeeeceEeecccc--ceEEeEEC--CCEE-EEEeCCCeEEEEcC-CCceEEEee
Q 003208 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 272 ~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~--~~~l-~s~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
+.+ ..++.|++||+.+.+. ...+.......+.. ....++|+ ++++ ++.+.++.+.+||. +++.+..+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred EEEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 554 5699999999988654 22111000000111 23456777 4554 44456778999999 666655543
Q ss_pred cccCCceEEEEEccCCCEEEEE-eCCCcEEEEecCC
Q 003208 345 EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (839)
Q Consensus 345 ~h~~~~i~~~~~~~~~~~l~t~-~~dg~i~iw~~~~ 379 (839)
+.. .+++++|+|++++|+++ +.+|.|++||++.
T Consensus 247 -~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 247 -VGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred -eCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 333 58999999999998876 4689999999965
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=2.7e-17 Score=171.36 Aligned_cols=270 Identities=12% Similarity=0.097 Sum_probs=186.2
Q ss_pred CCCcCccccccCCCce------eeeeeEEEEecCCCCCCCcceE-EEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 1 MGKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~~------~~~Vt~l~f~~~~~~~~~~~~l-~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+.|+++++||+.+++. ...+.+++|+ |+ +..+ +++. ++.|++||..+++.+..+..+. .+..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~--~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~ 79 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLS--KD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--DPELFA 79 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCC--CccEEE
Confidence 4689999999988762 2336789999 98 6655 4544 7899999999998877776433 356788
Q ss_pred ecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la 151 (839)
++ |+++ .++++. .++.+++||+... +.+..+.. ...+.+++|+| ++.+++
T Consensus 80 ~~-------~~g~---~l~~~~~~~~~l~~~d~~~~---------------~~~~~~~~-~~~~~~~~~~~---dg~~l~ 130 (300)
T TIGR03866 80 LH-------PNGK---ILYIANEDDNLVTVIDIETR---------------KVLAEIPV-GVEPEGMAVSP---DGKIVV 130 (300)
T ss_pred EC-------CCCC---EEEEEcCCCCeEEEEECCCC---------------eEEeEeeC-CCCcceEEECC---CCCEEE
Confidence 88 8873 444443 4799999999752 33444432 23468899999 999999
Q ss_pred EEeCCC-cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-EeecCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 152 IGCSDN-SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 152 s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
+++.++ .+.+||..+++....+...... ..+.+ ++++.+++ ++..++.|++||+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~---s~dg~~l~~~~~~~~~v~i~d~~------------------ 187 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQRP--RFAEF---TADGKELWVSSEIGGTVSVIDVA------------------ 187 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCCc--cEEEE---CCCCCEEEEEcCCCCEEEEEEcC------------------
Confidence 888764 5678899887776554332221 22333 57787775 45568999999998
Q ss_pred CCCCceeeEeecccccceeeEEEecC-------CCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcccCccCCCCCceeeec
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 301 (839)
+.+.+..+..+ ......++|+|++++++. .+.++.+.+||+.+.+. .
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~-----~----- 242 (300)
T TIGR03866 188 ---------------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV-----L----- 242 (300)
T ss_pred ---------------cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE-----E-----
Confidence 33333332211 112356889999998654 45567899999987554 1
Q ss_pred eEeeccccceEEeEEC--CCEEEEE-eCCCeEEEEcC-CCceEEEeecccCCceEEEEEcc
Q 003208 302 SVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (839)
Q Consensus 302 ~~~~~h~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~ 358 (839)
....+...+++++|+ +.+|+++ +.++.|++||+ +++.+..+.... ..+.++++|
T Consensus 243 -~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~ 300 (300)
T TIGR03866 243 -DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR--LPWGVVVRP 300 (300)
T ss_pred -EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc--ccceeEeCC
Confidence 112234578899998 5677775 56899999999 788888887543 468888865
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-18 Score=169.82 Aligned_cols=269 Identities=14% Similarity=0.160 Sum_probs=195.6
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeec-CceEEeEEecccccccCCCccceeeEEEE--EcCcEEEEEEeeccCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~l~~--~~~~~i~iw~~~~~~~~~~ 112 (839)
.+.++..+..+++||....+....+..+. ...+..+.|. ..+ .+++. ++|+.+++|.-..+. +
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~-------~~n----~lvvas~~gdk~~~~~~K~g~~-~-- 69 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ-------RRN----FLVVASMAGDKVMRIKEKDGKT-P-- 69 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecc-------ccc----eEEEeecCCceeEEEecccCCC-C--
Confidence 46677777789999998766555444322 1237788887 443 33333 468999999865321 0
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
....+..+.+. .-.|++... ...++++|+..++|+|||++...+.+.+..|. +.+..+.+ +..
T Consensus 70 --------~Vp~~~k~~gd--~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~Y---N~~ 132 (673)
T KOG4378|consen 70 --------EVPRVRKLTGD--NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ-STVTYVDY---NNT 132 (673)
T ss_pred --------ccceeeccccc--hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCc-ceeEEEEe---cCC
Confidence 02233333333 345555555 55789999999999999999777777777776 44555655 567
Q ss_pred ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC-CCCeEEEEEcCCCCE-
Q 003208 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSK- 270 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~- 270 (839)
..+||+++..|.|.|-.+. ++.....|.-. ...|.-+.|+|..+.
T Consensus 133 DeyiAsvs~gGdiiih~~~---------------------------------t~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK---------------------------------TKQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred cceeEEeccCCcEEEEecc---------------------------------cCccccceecCCCCeEEEeeccccccee
Confidence 7899999999999999988 44444444422 345678999997664
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCceEEEeecc
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h 346 (839)
|.+++++|.|.+||+...... - .....|..+...++|+ +.+|++.|.|..|.+||. ..+....+...
T Consensus 180 L~~asd~G~VtlwDv~g~sp~-----~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSPI-----F----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred eEeeccCCeEEEEeccCCCcc-----c----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 677899999999999876541 1 2567899999999998 478999999999999999 44444555443
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
. |..+++|.++|.+|+.|...|.|..||++.
T Consensus 251 ~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 251 H--PLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred C--CcceeeecCCceEEEeecCCceEEEEeccc
Confidence 3 689999999999999999999999999976
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-17 Score=176.63 Aligned_cols=243 Identities=13% Similarity=0.168 Sum_probs=186.2
Q ss_pred ecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 63 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
.|...-+.|++. |+|+ .+++++.|+.|++|+..... +.-..+.-+...|.+++.
T Consensus 11 aht~G~t~i~~d-------~~ge---fi~tcgsdg~ir~~~~~sd~--------------e~P~ti~~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYD-------PDGE---FICTCGSDGDIRKWKTNSDE--------------EEPETIDISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEc-------CCCC---EEEEecCCCceEEeecCCcc--------------cCCchhhccCceeEEEee--
Confidence 343457889999 8884 66666779999999875431 111122237788888887
Q ss_pred ccCCCcEEEEEeCCCcEEEEecCCCc---eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCC
Q 003208 143 VCNGNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 143 ~~~~~~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~ 219 (839)
..++|++|+.+++|.+|.+.+++ .+.++..+.++.+++ .+|.++|.|+.|-.|++-+..
T Consensus 65 ---~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-------g~g~~iaagsdD~~vK~~~~~-------- 126 (933)
T KOG1274|consen 65 ---YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-------GSGKMIAAGSDDTAVKLLNLD-------- 126 (933)
T ss_pred ---cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEe-------cCCcEEEeecCceeEEEEecc--------
Confidence 44689999999999999997764 455666666655554 789999999999999999998
Q ss_pred CCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceee
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 299 (839)
.......+++|+++|.+|.|+|++++||+.+-||.|++||+.++... ..+
T Consensus 127 -------------------------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~-----~tl 176 (933)
T KOG1274|consen 127 -------------------------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS-----KTL 176 (933)
T ss_pred -------------------------ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh-----hhc
Confidence 56667789999999999999999999999999999999999987652 211
Q ss_pred e---ceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeeccc-CCceEEEEEccCCCEEEEEeCCCcE
Q 003208 300 G---SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAI 372 (839)
Q Consensus 300 ~---~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~-~~~i~~~~~~~~~~~l~t~~~dg~i 372 (839)
. +..-......+..++|+ +..++..+.|+.|++|+. .......+.... ...+..++|+|+|++||+++.||.|
T Consensus 177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 1 00111113456678899 468888899999999999 556666665422 2138889999999999999999999
Q ss_pred EEEecCC
Q 003208 373 KVHQFQA 379 (839)
Q Consensus 373 ~iw~~~~ 379 (839)
.+||.+.
T Consensus 257 ~vWnv~t 263 (933)
T KOG1274|consen 257 LVWNVDT 263 (933)
T ss_pred EEEeccc
Confidence 9999975
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.6e-20 Score=190.73 Aligned_cols=234 Identities=23% Similarity=0.355 Sum_probs=194.4
Q ss_pred cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEE
Q 003208 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (839)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw 208 (839)
..|...|.++..-. ....+++|+.|..+-+|.+.....+..+.++.. .+-++.| +....+|++|+.+|.|++|
T Consensus 25 ~~hsaav~~lk~~~---s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f---~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRK---SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTF---DTSERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhceeeeec---cceeeccCCCceeeccccccCCchhheeeccCC-cceeeec---CcchhhhcccccCCceeee
Confidence 36888888888765 778899999999999999987777666665554 3456665 5778899999999999999
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
|+. ..+.++.+.||...+.++.|+|-+.+.++++.|..+++||.+..
T Consensus 98 Dle---------------------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 98 DLE---------------------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred ehh---------------------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 999 78888899999999999999999999999999999999999976
Q ss_pred ccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEE
Q 003208 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t 365 (839)
.+ . ..+.+|...|.+++|+ |.+++++++|.+++|||. .|+.+..|..|.+ .+.++.|+|..-++++
T Consensus 145 Gc-----~-----~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 145 GC-----S-----HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAP 213 (825)
T ss_pred Cc-----e-----eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhcc
Confidence 65 2 3777899999999999 579999999999999999 8999999999999 5999999999999999
Q ss_pred EeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceE
Q 003208 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (839)
Q Consensus 366 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i 442 (839)
||.|+++++||++.-.+ +.- .......|++.+|++++..+..+..-.+
T Consensus 214 Gs~d~tv~f~dletfe~------------------I~s-----------~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEV------------------ISS-----------GKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred CCCCceeeeeccceeEE------------------eec-----------cCCccCCceeeeecCCceeeecCchhhh
Confidence 99999999999964111 000 0111246999999999987776654433
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.1e-17 Score=168.69 Aligned_cols=238 Identities=13% Similarity=0.112 Sum_probs=166.0
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
.+-..++||++.|.++...| .|.+||+|+.||+|+||.+.++.+++++.... .+.++.|. ..++..+||++...
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~-P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWN-PLSDLCVLAVAVGE 464 (733)
T ss_pred eeeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEec-CCCCceeEEEEecC
Confidence 34557789999999999999 99999999999999999999999999876433 23444442 22344455555443
Q ss_pred CeEEEEEeeccccccCCCC-CCCccCCCCCCCceeeEeecccc---cceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC-
Q 003208 203 NEIIVWKVDWEHVAPLLNS-PEGNHAHGSSSDFKCFKLQDQQH---TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d- 277 (839)
.+.+-+...+........ ...++.......+..+..|.... ...-++....|...|..|.|+..|.+|++...+
T Consensus 465 -~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 -CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred -ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 377777665533322111 11111112222444666676431 122244556799999999999999999987654
Q ss_pred --CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceE
Q 003208 278 --RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (839)
Q Consensus 278 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~ 352 (839)
..|.|.++...... ..+....+.|.++.|+| .+++.++. ..|+|||+ ....++++..... .|.
T Consensus 544 ~~~~VliHQLSK~~sQ----------~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS 611 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQ----------SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WIS 611 (733)
T ss_pred CcceEEEEeccccccc----------CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eee
Confidence 56889988775441 13444556789999994 56666664 57999999 6666666655444 699
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 353 RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 353 ~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|+++|.|..|+.|+.|+.+..+|++.
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEccc
Confidence 999999999999999999999999843
No 159
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.3e-17 Score=163.12 Aligned_cols=503 Identities=12% Similarity=0.098 Sum_probs=277.9
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
.|...|.|+.++ .. ...+.++.|..+.+|+-.+.+....+...+..-.+.+..-+. .. ..|+--+.++.++
T Consensus 12 r~~e~vc~v~w~--~~----eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~r--s~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--SN----EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGR--SS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--cc----ceEEEeccCceEEEeecccchhhhhhhCCcccCCcccccccc--cc-CCCCCcceEEEEc
Confidence 467778888888 54 567777777777777654444333333333221222222111 11 1111124788888
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.||.+.|.+-. ++.......|.+.|.+-.|+| +|.-|++++.||.|++|.-... .-.++
T Consensus 83 ~DGkf~il~k~----------------~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSrsGM-LRStl- 141 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSRSGM-LRSTV- 141 (737)
T ss_pred CCceEEEeccc----------------chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEeccch-HHHHH-
Confidence 99999998764 455567789999999999999 9999999999999999986432 11111
Q ss_pred cCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 175 SPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
......++++++ .|+.. .+.+.+ +.+.+=.+. ....+-..+
T Consensus 142 ~Q~~~~v~c~~W---~p~S~~vl~c~g--~h~~IKpL~---------------------------------~n~k~i~Wk 183 (737)
T KOG1524|consen 142 VQNEESIRCARW---APNSNSIVFCQG--GHISIKPLA---------------------------------ANSKIIRWR 183 (737)
T ss_pred hhcCceeEEEEE---CCCCCceEEecC--CeEEEeecc---------------------------------cccceeEEe
Confidence 112223566665 24433 344332 455555544 344555788
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw 333 (839)
+|.+-|.++.|++..+.+++|++|-..++||...... +....|..+|++++|.+..++..+.-+++|
T Consensus 184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-----------f~S~~~ey~ITSva~npd~~~~v~S~nt~R-- 250 (737)
T KOG1524|consen 184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-----------FTSAAEEYAITSVAFNPEKDYLLWSYNTAR-- 250 (737)
T ss_pred ccCcEEEEeecCccccceeecCCceeEEeecccCccc-----------ccCChhccceeeeeeccccceeeeeeeeee--
Confidence 9999999999999999999999999999999887655 577789999999999965444444344555
Q ss_pred cCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCcCc-cCcCCCCcccccCCCcceEEeecCCCccc
Q 003208 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (839)
Q Consensus 334 ~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (839)
+...+...|..++|++||..+++|...|.+.+=-. +.+.. ..++... .....+.+ .+....
T Consensus 251 ---------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~------~~r~~I~v--rdV~~~ 313 (737)
T KOG1524|consen 251 ---------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATS------KSRKSITV--RDVATG 313 (737)
T ss_pred ---------ecCCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEe------eccceEEe--ehhhhh
Confidence 22222226999999999999999999988765433 22111 1111000 00000011 111100
Q ss_pred eeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeC
Q 003208 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (839)
Q Consensus 412 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~ 491 (839)
+...-.....+...++. -+.+++++ ...++++.-.+-.. .-+..+. ...+..+. .....+++.-
T Consensus 314 v~d~LE~p~rv~k~sL~-Y~hLvvaT-s~qvyiys~knwnt---piiidgr-e~tr~lie---------q~ek~fli~d- 377 (737)
T KOG1524|consen 314 VQDILEFPQRVVKFSLG-YGHLVVAT-SLQVYIYSEKNWNT---PIIIDGR-EDTRNLIE---------QGEKYFLILD- 377 (737)
T ss_pred HHHHhhCccceeeeeec-eeEEEEEe-ccEEEEEecCCccC---cEEEecc-ccchhHhh---------hhhhheEEec-
Confidence 00000111234444432 23444444 33454442211111 0111111 11111111 1112233332
Q ss_pred CCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEe--CCCCcEEEeee-cCCCCcccccCCccce
Q 003208 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA--DPKGRLKLWQL-CDPFSSVCYESSKTNN 568 (839)
Q Consensus 492 ~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~~wd~-~~~~~~~~~~~~~~~~ 568 (839)
.-.|.+|..+..... ..... +....++.. -..+.....|+.- .....+++||. .+++....-
T Consensus 378 -gsSi~lytyegR~~~-----np~~P-g~~~dlL~~-rtlsLandtLaird~ad~kvlhlFd~istgk~qgDg------- 442 (737)
T KOG1524|consen 378 -GSSIWLYTYEGRLHL-----NPRYP-GSQIDLLTW-RTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDG------- 442 (737)
T ss_pred -CcEEEEEEecCceec-----CCCCC-Ccccccccc-eeeecccceEEeecCCCCeeEEeccCCCCCcccCCc-------
Confidence 235667766442211 00000 000001110 0133333455542 23345788888 544421111
Q ss_pred eeeeeccccccCceEEEEeee----cCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEE
Q 003208 569 VFLVAEFSSCFGARIMCLDAS----FEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLS 644 (839)
Q Consensus 569 ~~~~~~~~~~h~~~I~~l~~s----~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~ 644 (839)
-...|...|..++.. ++.+.+|--+..+.++|=.+.+- ....++-.+. ..|..++
T Consensus 443 ------k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrf-------gkee~I~KiG--------TmVhtLa 501 (737)
T KOG1524|consen 443 ------KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRF-------GKEEEIYKIG--------TMVHTLA 501 (737)
T ss_pred ------cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhc-------Cchhhhhhhh--------hhhhhhh
Confidence 011356666666664 67789999999999998777642 1111222221 3488899
Q ss_pred EEeccCCceEEEeecCcCcEEEEEEec
Q 003208 645 VAKLRSNQTEIRSTGGDGCICYLEYDK 671 (839)
Q Consensus 645 ~~~~~~~~~~l~s~~~Dg~i~iw~~~~ 671 (839)
|+ + ..-++.+=.|+++.+|=..+
T Consensus 502 wn---d-ttNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 502 WN---D-TTNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred hc---c-ccceeeeeccceEEEEEcCC
Confidence 98 3 35588899999999997654
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=4.9e-18 Score=162.00 Aligned_cols=211 Identities=18% Similarity=0.272 Sum_probs=159.7
Q ss_pred eEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC----------------ceEEEEecCCceeEEEEeecc
Q 003208 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS----------------SIILEVHSPERCLLYSMKLWG 188 (839)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~----------------~~~~~~~~~~~~~~~s~~~~~ 188 (839)
......|.+.|+.+...+.. +..+.|+=+..|.|.|||+... +++.++..+. ..-|.+++.
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWS- 220 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWS- 220 (440)
T ss_pred cccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeeecc-
Confidence 34445788888888888721 3346677788999999998531 2344444443 345666652
Q ss_pred CCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC-
Q 003208 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC- 267 (839)
Q Consensus 189 ~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~- 267 (839)
+.....+++|..-+.|++|...++...- . ...+.+|+.+|-.|+|+|.
T Consensus 221 -p~~~g~LlsGDc~~~I~lw~~~~g~W~v---------------------------d---~~Pf~gH~~SVEDLqWSptE 269 (440)
T KOG0302|consen 221 -PIKTGRLLSGDCVKGIHLWEPSTGSWKV---------------------------D---QRPFTGHTKSVEDLQWSPTE 269 (440)
T ss_pred -cccccccccCccccceEeeeeccCceee---------------------------c---CccccccccchhhhccCCcc
Confidence 2234468888888999999987322111 1 1235679999999999995
Q ss_pred CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC----CCceEE
Q 003208 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DGKQLK 341 (839)
Q Consensus 268 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~----~~~~~~ 341 (839)
...|+|||-|++|+|||++.+.. ... .....|.+.|..+.|+ -.+|++|+.||+++|||+ .++++.
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~-----~~~---~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPK-----KAA---VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred CceEEeeecCceEEEEEecCCCc-----cce---eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 46899999999999999998744 111 2457899999999999 358999999999999999 478899
Q ss_pred EeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecC
Q 003208 342 MIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 342 ~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~ 378 (839)
.++.|.. +|+++.|+|.. ..|+++|.|..|.+||+.
T Consensus 342 ~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 342 TFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999 89999999864 688899999999999994
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.9e-18 Score=168.03 Aligned_cols=276 Identities=11% Similarity=0.086 Sum_probs=200.0
Q ss_pred CCcCccccccCCCc-------eee--eeeEEEEecCCCCCCCcceEEEee--CCeeEEEECCCCe--eeeEEeeecCceE
Q 003208 2 GKKDLSEWRLDVGQ-------YLG--EISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGT--LIRPFQVFHGIRL 68 (839)
Q Consensus 2 ~d~~i~~w~~~~~~-------~~~--~Vt~l~f~~~~~~~~~~~~l~~g~--~~~v~iwd~~~~~--~~~~~~~~~~~~v 68 (839)
.-.++++||..... |.. .+..+++. .. ..++++.. |..+++|.- .|+ .+..+....+..-
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~----n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RR----NFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeecc--cc----ceEEEeecCCceeEEEecc-cCCCCccceeeccccchH
Confidence 34578999987754 222 27788887 33 33455443 578888873 344 1222222222233
Q ss_pred EeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC
Q 003208 69 HGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (839)
Q Consensus 69 ~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (839)
.|++.. ... .+++.+| .+.|+|||+.. ....+.+++|.+.|+++.++- ..
T Consensus 83 ~Cv~~~-------s~S----~y~~sgG~~~~Vkiwdl~~---------------kl~hr~lkdh~stvt~v~YN~---~D 133 (673)
T KOG4378|consen 83 FCVACA-------SQS----LYEISGGQSGCVKIWDLRA---------------KLIHRFLKDHQSTVTYVDYNN---TD 133 (673)
T ss_pred HHHhhh-------hcc----eeeeccCcCceeeehhhHH---------------HHHhhhccCCcceeEEEEecC---Cc
Confidence 344333 111 4455444 79999999984 345677899999999999998 88
Q ss_pred cEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 148 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
.+||+++..|.|.|..+.++.....+..+....+--+.++ .....+|.+++.+|.|.+||+.
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys--~skr~lL~~asd~G~VtlwDv~---------------- 195 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYS--PSKRFLLSIASDKGAVTLWDVQ---------------- 195 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecc--cccceeeEeeccCCeEEEEecc----------------
Confidence 9999999999999999999888777766655545445552 2234577889999999999998
Q ss_pred CCCCCCceeeEeecccccceee-EEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
...++ ...+.|..+..+|+|+|.. ..|++.+.|..|.+||...... . ...
T Consensus 196 -----------------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-----~------~~l 247 (673)
T KOG4378|consen 196 -----------------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-----T------DRL 247 (673)
T ss_pred -----------------CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----c------cee
Confidence 44444 3456899999999999955 5688999999999999987654 1 222
Q ss_pred ccccceEEeEEC--CCEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEEEEEccCC
Q 003208 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLS 360 (839)
Q Consensus 306 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~~~~~~~~ 360 (839)
....+...++|. |.+|+.|...|.|..||+ ...++..+..|.. .|++++|-|..
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP 305 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc
Confidence 334577889998 689999999999999999 4578889999998 69999997754
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=2.3e-16 Score=152.48 Aligned_cols=349 Identities=15% Similarity=0.146 Sum_probs=212.9
Q ss_pred CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC
Q 003208 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (839)
Q Consensus 177 ~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (839)
....++++.+...+. ..+++|+.|..|++|.+..+...... ........+..|.
T Consensus 12 ~~~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~~~------------------------~~V~y~s~Ls~H~ 65 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGGGD------------------------MKVEYLSSLSRHT 65 (434)
T ss_pred CCCceEEEEeccCcc--cceecccCccceeeeeeeecCCCCCc------------------------eeEEEeecccCCc
Confidence 334467777754332 39999999999999998732221100 0334566788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCC------CCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD------SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 328 (839)
..|+++.|+|+|..|+||+++|.|.+|-...-.... .......-...+.+|...|..++|+ +.++++++.|+
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN 145 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc
Confidence 999999999999999999999999999877311100 0001111113778899999999998 68999999999
Q ss_pred eEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCc-cCcC--CCCcccccCCCcceEEee
Q 003208 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLP-GSLE--SHPEAKEFNGRTEIFSIK 404 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~ 404 (839)
.+++||+ .|..+..+..|.. -+..++|.|-++++++-+.|...+.+++..... +... ..............+.+-
T Consensus 146 s~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 146 SVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred eEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 9999999 8999999999988 599999999999999999998777777643211 1100 000000000111111111
Q ss_pred cCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeec-CCCceEEeeecCCCCCCCCCC
Q 003208 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGI 483 (839)
Q Consensus 405 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 483 (839)
.. ..-....+.++|+|+|.++++.. |.+- ........-..++... ...|+..+ ..+.
T Consensus 225 hD---------eTlksFFrRlsfTPdG~llvtPa-g~~~---~g~~~~~n~tYvfsrk~l~rP~~~l---------p~~~ 282 (434)
T KOG1009|consen 225 HD---------ETLKSFFRRLSFTPDGSLLVTPA-GLFK---VGGGVFRNTSYVFSRKDLKRPAARL---------PSPK 282 (434)
T ss_pred ec---------CchhhhhhhcccCCCCcEEEccc-ceee---eCCceeeceeEeeccccccCceeec---------CCCC
Confidence 00 11124678889999998887642 2211 0000000000111111 11222221 1233
Q ss_pred CcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecC-CCeEEEEeCCCCcEEEeeecCCCCccccc
Q 003208 484 DDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCYE 562 (839)
Q Consensus 484 ~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 562 (839)
...+++.. .-..|++..-...+. .+.. -+-.++.+. ...|.+||.+..++
T Consensus 283 k~~lavr~---~pVy~elrp~~~~~~--------------------~~~lpyrlvfaiAt-~~svyvydtq~~~P----- 333 (434)
T KOG1009|consen 283 KPALAVRF---SPVYYELRPLSSEKF--------------------LFVLPYRLVFAIAT-KNSVYVYDTQTLEP----- 333 (434)
T ss_pred cceEEEEe---eeeEEEecccccccc--------------------ccccccceEEEEee-cceEEEeccccccc-----
Confidence 34555554 223444432111100 0111 122333444 46799999886542
Q ss_pred CCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccc
Q 003208 563 SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 563 ~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
+..+.. -|-..||.++||+||..|+..|.||...+-.++..
T Consensus 334 ------~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 334 ------LAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ------eEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 112222 47889999999999999999999999988877753
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=1.1e-16 Score=156.73 Aligned_cols=263 Identities=17% Similarity=0.160 Sum_probs=186.5
Q ss_pred CCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC
Q 003208 53 AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL 131 (839)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 131 (839)
+-......+.+.+ +|++++|+|. .+- .+++++. .|.|-+||+..+.. ...-+..+..|
T Consensus 175 ~~~~~~v~kv~~~-Rit~l~fHPt-----~~~----~lva~GdK~G~VG~Wn~~~~~~-----------d~d~v~~f~~h 233 (498)
T KOG4328|consen 175 DYRILNVAKVTDR-RITSLAFHPT-----ENR----KLVAVGDKGGQVGLWNFGTQEK-----------DKDGVYLFTPH 233 (498)
T ss_pred cceecceeEeccc-ceEEEEeccc-----Ccc----eEEEEccCCCcEEEEecCCCCC-----------ccCceEEeccC
Confidence 3344455555554 8999999954 121 4445444 59999999963221 13445667889
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec-CCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
..+|.++.|+|. +...+++.+.||+|++-|+++...-..+.. ......+++.+ +.+...++.|+.-|...+||.
T Consensus 234 s~~Vs~l~F~P~--n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~---~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 234 SGPVSGLKFSPA--NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF---SAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred CccccceEecCC--ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc---cCCCccEEEeecccceEEEEe
Confidence 999999999993 556788999999999999987643222221 23334455555 555666777777789999999
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~ 289 (839)
+. .+.....+.-|+..|.+|+++|.. .+|+++|.|++.+|||++.-.
T Consensus 309 R~--------------------------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 309 RT--------------------------------DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred ec--------------------------------CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence 82 334455566788999999999965 568999999999999998754
Q ss_pred cCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCC-----CceEEEeecccC---C--ceEEEEEc
Q 003208 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEHIG---R--GIWRCLYD 357 (839)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~-----~~~~~~~~~h~~---~--~i~~~~~~ 357 (839)
...+ ++ .....|...|.++.|+ +..|+|.+.|..|+|||.. -.+..++ .|+. + ......|.
T Consensus 357 ~K~s----p~--lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 357 GKAS----PF--LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred CCCC----cc--eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeC
Confidence 4211 11 3567899999999999 4569999999999999973 1222222 2322 1 13356799
Q ss_pred cCCCEEEEEeCCCcEEEEecCCc
Q 003208 358 SLSSLLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~~~~ 380 (839)
|+..++++|-.-..|-++|-++.
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCC
Confidence 99999999999889999998653
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.9e-17 Score=172.50 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=211.1
Q ss_pred CccccccCCCce-eeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeee--cCceEEeEEeccccccc
Q 003208 5 DLSEWRLDVGQY-LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFINCTE 80 (839)
Q Consensus 5 ~i~~w~~~~~~~-~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~ 80 (839)
+|..||...... ..+-..+.|+ |- .+.+++.. ...|+|||++.++.+..|... ....|..+.+-..
T Consensus 1051 ~i~~W~~~~~~~n~~~pk~~~~h--pf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe---- 1120 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNNQPPKTLKFH--PF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE---- 1120 (1387)
T ss_pred cccchHHHHHhcCCCCCceeeec--CC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----
Confidence 445666543321 2244567788 65 45666666 579999999999988877642 3446888887633
Q ss_pred CCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEecc-------CCCcceEEEEEeeccCCCcEEEEE
Q 003208 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-------RLSHWVFDVCFLKVCNGNRSLAIG 153 (839)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~I~~~~~~~~~~~~~~las~ 153 (839)
-|. ..+++++.||.|+||+-....- . +.+++.-.. +..+.=.-+.|.. ...+|+++
T Consensus 1121 -~D~---aLlLtas~dGvIRIwk~y~~~~-----~-----~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ---~~G~Ll~t 1183 (1387)
T KOG1517|consen 1121 -QDD---ALLLTASSDGVIRIWKDYADKW-----K-----KPELVTAWSSLSDQLPGARGTGLVVDWQQ---QSGHLLVT 1183 (1387)
T ss_pred -cch---hheeeeccCceEEEeccccccc-----C-----CceeEEeeccccccCccCCCCCeeeehhh---hCCeEEec
Confidence 232 1677778899999998543210 0 022222211 1111112345554 44456566
Q ss_pred eCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 154 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
|.-..|+|||....++...+.....+.+.++.. ....++.|++|..||.|++||.+..
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a-------------------- 1241 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRMA-------------------- 1241 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecc--cccCCceEEEeecCCceEEeecccC--------------------
Confidence 667899999999888888877665555555433 3456899999999999999998811
Q ss_pred ceeeEeecccccceeeEEEecCCCC--eEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc---
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--- 307 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--- 307 (839)
.....+...+.|... |..+.+.+.|- .|++|+.||.|++||++.... .... ....|
T Consensus 1242 ----------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~---~iv~~~~y 1303 (1387)
T KOG1517|consen 1242 ----------PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFL---TIVAHWEY 1303 (1387)
T ss_pred ----------CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccc---eeeecccc
Confidence 123456677888887 99999998764 599999999999999998522 1111 22222
Q ss_pred ccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccC------CceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 308 NARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 308 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~------~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+..+++..+ ...+++|+. +.|+||++.|+.+..++.+.+ ..+.|++|+|-.-++++|..|..|.+|....
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 2357888877 478888887 999999998887776664432 2578999999988999999999999998744
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=5.2e-17 Score=158.63 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=166.9
Q ss_pred eEEEEecCCC-CCCCcceEEEee-CCeeEEEECCCC---eeeeEEe-----------------eecCceEEeEEeccccc
Q 003208 21 SALCFVHLPS-HLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQ-----------------VFHGIRLHGISCNFINC 78 (839)
Q Consensus 21 t~l~f~~~~~-~~~~~~~l~~g~-~~~v~iwd~~~~---~~~~~~~-----------------~~~~~~v~~i~~~~~~~ 78 (839)
.|+++.+-|. ..+.++|+|.|. ++.|.|||+.=- .+..++- .+|...|..++|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n---- 252 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN---- 252 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc----
Confidence 4666642111 123468999999 999999997421 0000110 0122345566666
Q ss_pred ccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCC
Q 003208 79 TEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~ 157 (839)
.+-. .+|+. +.|++|++||+.+ +++...+..|.+.|.+++|+| .....|++|+.|+
T Consensus 253 ---~~~~---nVLaSgsaD~TV~lWD~~~---------------g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 253 ---RNFR---NVLASGSADKTVKLWDVDT---------------GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYDG 309 (463)
T ss_pred ---cccc---eeEEecCCCceEEEEEcCC---------------CCcceehhhcCCceeEEEecC--CCceEEEeccccc
Confidence 2221 34444 4599999999997 567778888999999999999 3677899999999
Q ss_pred cEEEEecCCCc---eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 158 SIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 158 ~i~vwd~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
+|.+.|.+... ...++.+....+.|. ......+++++.||.|+-+|++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~------~~se~~f~~~tddG~v~~~D~R----------------------- 360 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWD------PHSENSFFVSTDDGTVYYFDIR----------------------- 360 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEec------CCCceeEEEecCCceEEeeecC-----------------------
Confidence 99999998422 222333333333332 2345678889999999999998
Q ss_pred eeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc---cc
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---AR 310 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~ 310 (839)
..++++..+++|.++|.+|++++.. ..+++++.|+.|++|++...... ....|. ++
T Consensus 361 ---------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-----------~v~~~~~~~~r 420 (463)
T KOG0270|consen 361 ---------NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-----------SVKEHSFKLGR 420 (463)
T ss_pred ---------CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-----------ccccccccccc
Confidence 1458899999999999999999854 56889999999999999875541 222222 22
Q ss_pred eEEeEEC---CCEEEEEeCCCeEEEEcC
Q 003208 311 VWDCCLT---DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 311 v~~~~~~---~~~l~s~~~dg~i~vw~~ 335 (839)
..|.++. +..++.||..+.++|||+
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeec
Confidence 4455555 468899999999999998
No 166
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.2e-16 Score=145.35 Aligned_cols=291 Identities=13% Similarity=0.143 Sum_probs=195.6
Q ss_pred eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
-.|+.|++ .|.+||+|..||.|.|||+.+....+.+..|.+. +.++++ +++|..|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-i~sl~W---S~dgr~LltsS~D~si~lwDl~--- 95 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-ITSLCW---SRDGRKLLTSSRDWSIKLWDLL--- 95 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccc-eeEEEe---cCCCCEeeeecCCceeEEEecc---
Confidence 68999999 9999999999999999999998877766666654 456665 7999999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDS 293 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~ 293 (839)
.+.+++.+. ...+|....|+|.. +..+.+-.+..-.+-++.....
T Consensus 96 ------------------------------~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--- 141 (405)
T KOG1273|consen 96 ------------------------------KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--- 141 (405)
T ss_pred ------------------------------CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce---
Confidence 566666665 46899999999954 3444444455555555554322
Q ss_pred CCceeeeceEeecc-ccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 294 DSIEEVGSSVLYGH-NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 294 ~~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
..+. ..-.+. .....+..|. |+++++|...|.+.+++. +.+++..++......|..+-++..|+.|+.-+.|
T Consensus 142 ---~~Lp-~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 142 ---SVLP-KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred ---eecc-CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 1010 000011 1111222455 899999999999999999 7788877776653368899999999999999999
Q ss_pred CcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeecc-CCCcceEEEEEecCCeEEEEeccceEEEEEec
Q 003208 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD-SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (839)
Q Consensus 370 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~ 448 (839)
..||.|+++.-....-.+.. ... ....+ .....-++++|+.+|.++++++.. -...-+|
T Consensus 218 RvIR~ye~~di~~~~r~~e~-----------------e~~--~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-aHaLYIW 277 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEV-----------------EPE--HKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-AHALYIW 277 (405)
T ss_pred ceEEEEehhhhcccCccCCc-----------------Chh--HHHHHHHhhhhhhheeecCCccEEEecccc-ceeEEEE
Confidence 99999998531110000000 000 00000 011235788999999888876532 2222255
Q ss_pred CCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEc
Q 003208 449 DMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
........+++.+..+....-++.++.. ..+++- ..|.+++|...
T Consensus 278 E~~~GsLVKILhG~kgE~l~DV~whp~r--------p~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 278 EKSIGSLVKILHGTKGEELLDVNWHPVR--------PIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ecCCcceeeeecCCchhheeecccccce--------eeeeec-cCCceEEEEee
Confidence 5555556678877766666655555543 344444 67999999764
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=3.5e-16 Score=146.45 Aligned_cols=277 Identities=15% Similarity=0.190 Sum_probs=195.6
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC------------eeeeEEeeecCceEEeEEecccccccCCCccce
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG------------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 87 (839)
..+.++ || |..+++-+ |..+++|++... ++..+++...+..|...+|-+.--...|+.
T Consensus 53 kgckWS--PD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t--- 123 (406)
T KOG2919|consen 53 KGCKWS--PD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST--- 123 (406)
T ss_pred ccceeC--CC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc---
Confidence 367789 99 67777655 999999997421 223344444566777777753322233554
Q ss_pred eeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc---eEEEEEeeccCCCcEEEEEeCCCcEEEEe
Q 003208 88 TFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW---VFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (839)
Q Consensus 88 ~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---I~~~~~~~~~~~~~~las~~~d~~i~vwd 163 (839)
.++++ +.+.-|++||.-++. ++.....-.|.+. -.+++|+| +|..|+.| ..++|+++|
T Consensus 124 -~l~a~ssr~~PIh~wdaftG~-------------lraSy~~ydh~de~taAhsL~Fs~---DGeqlfaG-ykrcirvFd 185 (406)
T KOG2919|consen 124 -NLFAVSSRDQPIHLWDAFTGK-------------LRASYRAYDHQDEYTAAHSLQFSP---DGEQLFAG-YKRCIRVFD 185 (406)
T ss_pred -ceeeeccccCceeeeeccccc-------------cccchhhhhhHHhhhhheeEEecC---CCCeEeec-ccceEEEee
Confidence 44554 568999999998754 2222222335443 36899999 99999765 578999999
Q ss_pred c-CCCceEE---EE---ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCcee
Q 003208 164 I-SNSSIIL---EV---HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (839)
Q Consensus 164 ~-~~~~~~~---~~---~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (839)
+ +.+..-. ++ +.....++.++++. +.+...++.|+.-..+-|+...
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~s--P~~~~~~a~gsY~q~~giy~~~------------------------- 238 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAFS--PMDSKTLAVGSYGQRVGIYNDD------------------------- 238 (406)
T ss_pred ccCCCCCCcchhhhhcccccccceeeeeecc--CCCCcceeeecccceeeeEecC-------------------------
Confidence 9 4443211 11 11223445455552 3445689999998888888877
Q ss_pred eEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccCccCCCCCceeeeceEeecccc-ceEEe
Q 003208 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWDC 314 (839)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~ 314 (839)
...++..+.||.+.|+.+.|.++|+.|++|+. |-.|-.||++..... + ..+..|.. .-..|
T Consensus 239 --------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v-----~~L~rhv~~TNQRI 301 (406)
T KOG2919|consen 239 --------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP----V-----YALERHVGDTNQRI 301 (406)
T ss_pred --------CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----h-----hhhhhhccCccceE
Confidence 67888889999999999999999999999875 668999999985431 1 34555554 33345
Q ss_pred EEC----CCEEEEEeCCCeEEEEcC-C-CceEEEeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 315 CLT----DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 315 ~~~----~~~l~s~~~dg~i~vw~~-~-~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
.|. ++.|++|+.||.|++||+ . +..+..+..+.. .+..++++|--.+++|++..
T Consensus 302 ~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 302 LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 565 789999999999999999 3 677777777777 69999999998888888765
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.7e-17 Score=153.09 Aligned_cols=285 Identities=14% Similarity=0.177 Sum_probs=192.3
Q ss_pred eEEEe-eCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCC
Q 003208 37 FLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (839)
Q Consensus 37 ~l~~g-~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~ 115 (839)
.++++ +.|.|+|||..+|+.+..++++.. .+.++.|... .+|. .++.++.||.|++||+....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~-~~N~vrf~~~---ds~h-----~v~s~ssDG~Vr~wD~Rs~~------- 105 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-TTNGVRFISC---DSPH-----GVISCSSDGTVRLWDIRSQA------- 105 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCC-cccceEEecC---CCCC-----eeEEeccCCeEEEEEeecch-------
Confidence 34444 489999999999999999998776 5889999732 1243 68888899999999998654
Q ss_pred CccccceeeeEeccCCC-cceEEEEEeeccCCCcEEEEEeC----CCcEEEEecCCCce-EEEEecCCceeEEEEeeccC
Q 003208 116 PETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCS----DNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWGD 189 (839)
Q Consensus 116 ~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~las~~~----d~~i~vwd~~~~~~-~~~~~~~~~~~~~s~~~~~~ 189 (839)
.........|+ .+..|++.+. .++.++.|.. +-.|.+||++..+. +..+...+..-+.++.||+
T Consensus 106 ------e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP- 175 (376)
T KOG1188|consen 106 ------ESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP- 175 (376)
T ss_pred ------hhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC-
Confidence 23334455565 5677888776 7778887754 66799999998776 6666655555677888874
Q ss_pred CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-
Q 003208 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG- 268 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~- 268 (839)
.+.++|++|+.||.|.+||++... ....+...-.|..+|.++.|..++
T Consensus 176 -~~pnlLlSGSvDGLvnlfD~~~d~------------------------------EeDaL~~viN~~sSI~~igw~~~~y 224 (376)
T KOG1188|consen 176 -SDPNLLLSGSVDGLVNLFDTKKDN------------------------------EEDALLHVINHGSSIHLIGWLSKKY 224 (376)
T ss_pred -CCCCeEEeecccceEEeeecCCCc------------------------------chhhHHHhhcccceeeeeeeecCCc
Confidence 456799999999999999998210 222233334577889999998766
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeec---eEeeccccceEEeEEC-CCEEEEEeC-CCeEEEEcC----C---
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT-DSFIITAGE-DCTCRVWGS----D--- 336 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~-~~~l~s~~~-dg~i~vw~~----~--- 336 (839)
++|.+-+-+.+..+|+++.+..........+.. ........-|.+..-. ...++.++. -+...++-+ +
T Consensus 225 krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~ 304 (376)
T KOG1188|consen 225 KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL 304 (376)
T ss_pred ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccc
Confidence 568899999999999998876420000000000 0000000011111111 234444443 455555443 1
Q ss_pred CceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 337 ~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.+.+..+.+++..-|.++.|...+.+++|||.||.+.+|..+
T Consensus 305 ~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 305 LTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 345566766554467888888888999999999999999863
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7.3e-17 Score=146.78 Aligned_cols=297 Identities=12% Similarity=0.136 Sum_probs=196.5
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
.|.+.|+++.|- .+ + +|.+|. -|.|++|++++.+.+..++.+.+..|+.+... |++ .+.+-
T Consensus 12 p~~~~v~s~~fq--a~----~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~-------p~d----~l~tq 73 (323)
T KOG0322|consen 12 PHSSSVTSVLFQ--AN----E-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI-------PND----SLDTQ 73 (323)
T ss_pred cccchheehhhc--cc----h-hhhcccccceEEEEEeecCccchhhhhhccceeeceeec-------CCc----chhhc
Confidence 467889999998 55 4 477777 79999999999998888998888889999988 654 67777
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc-----CCC-cEEEEEeCCC-cEEEEecCC
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGN-RSLAIGCSDN-SIRVWDISN 166 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-----~~~-~~las~~~d~-~i~vwd~~~ 166 (839)
+.|..+.+|++.... .. ..|+-.++++-|.+.+ ... .+++.-+... .+++-|...
T Consensus 74 gRd~~L~lw~ia~s~-------------~i-----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~ 135 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSA-------------FI-----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD 135 (323)
T ss_pred CCCceEEEEEccCcc-------------eE-----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCc
Confidence 889999999998533 22 2333344555554421 011 1222211100 122222222
Q ss_pred CceEEEEecCC---ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 167 SSIILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 167 ~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
...+.....+. ...+.+...-.......++++|..+|.+.+||+..+.. ++++ +
T Consensus 136 ~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~--------------------~~~~---~ 192 (323)
T KOG0322|consen 136 TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK--------------------IIQL---P 192 (323)
T ss_pred cceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce--------------------eecc---c
Confidence 22222211111 11122222111223445788899999999999983211 1110 0
Q ss_pred ccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEE
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l 321 (839)
...+.......|..+|.++.+.+.-..=++++.+..+..|+++..... .+.-+ ...-....|..+.+- ++.+
T Consensus 193 ~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs----lq~~~--e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 193 QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS----LQIRK--EITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc----ccccc--eEEecCCCccceEEccCCcEE
Confidence 122444455689999999999987777789999999999999765331 11111 222222345555544 7899
Q ss_pred EEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 322 ~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+|+|.|+.+|||.. +.+++..++.|.. +|.+++|+|+..++|.++.|+.|.+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999 8999999999998 7999999999999999999999999986
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=5.3e-16 Score=142.96 Aligned_cols=271 Identities=20% Similarity=0.319 Sum_probs=189.9
Q ss_pred CCeeEEEECCC--CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-c---C----cEEEEEEeeccCCCCC
Q 003208 43 GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G---E----KRVKLFELNFELSPNS 112 (839)
Q Consensus 43 ~~~v~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~---~----~~i~iw~~~~~~~~~~ 112 (839)
++.|.+.+... +++....-.|+.+.|..|+-+ |-.. .+|++. . + -.+.||.+..+..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~-------P~d~---~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-- 106 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS-------PFDQ---RILATVYNDTSDSGVLTGAAIWQIPEPLGQ-- 106 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcC-------CCCC---ceEEEEEeccCCCcceeeEEEEecccccCc--
Confidence 47777776654 344444444556679999988 4432 455543 2 2 35789999754322
Q ss_pred CCCCccccceeeeEecc-CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce-EEEEecCC----ceeEEEEee
Q 003208 113 QYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE----RCLLYSMKL 186 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~-~~~~~~~~----~~~~~s~~~ 186 (839)
.....++++..+. .+-+.|.|+.|.| ++..||+-. |+.|.+|++..... ...+..+. ....++-.+
T Consensus 107 ----S~~~tlE~v~~Ldteavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 107 ----SNSSTLECVASLDTEAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred ----cccchhhHhhcCCHHHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 1122366677776 5667899999999 998888765 89999999987766 33333222 111222222
Q ss_pred ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEc
Q 003208 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWS 265 (839)
Q Consensus 187 ~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~ 265 (839)
..--++..+++. .|+++..||++ +.+....+ .+|...|..+.|+
T Consensus 179 -spHHdgnqv~tt-~d~tl~~~D~R---------------------------------T~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 179 -SPHHDGNQVATT-SDSTLQFWDLR---------------------------------TMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred -CCCCccceEEEe-CCCcEEEEEcc---------------------------------chhhhcchhhhhcceeeeccCC
Confidence 122356666654 67999999998 44433333 4788899999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-C--C-
Q 003208 266 SCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-D--G- 337 (839)
Q Consensus 266 ~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~--~- 337 (839)
|+.. +|++|++||.|+|||.+..+.. + ..+.+|.-+||++.|+ +.++++++.|..|.+|.. . .
T Consensus 224 pnkq~~lvt~gDdgyvriWD~R~tk~p----v-----~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 224 PNKQHILVTCGDDGYVRIWDTRKTKFP----V-----QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred CCceEEEEEcCCCccEEEEeccCCCcc----c-----cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 9764 6899999999999999886542 2 3788999999999998 589999999999999976 1 0
Q ss_pred --------------------------ceEEEeecccCCceEEEEEccCCC-EEEEEeCCCcEEEEecC
Q 003208 338 --------------------------KQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 338 --------------------------~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~~dg~i~iw~~~ 378 (839)
..+.++..|.. .|.+++|+.-.. ++++-+.||.+.|=++.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 13345666777 699999976544 67888999999887663
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.5e-16 Score=148.88 Aligned_cols=285 Identities=15% Similarity=0.186 Sum_probs=184.1
Q ss_pred eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC--CCCEE
Q 003208 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGSKL 271 (839)
Q Consensus 194 ~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l 271 (839)
..+|++...|.|++||.. +++.+..+++|...+..++|.. ....+
T Consensus 41 ~~vav~lSngsv~lyd~~---------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v 87 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGV 87 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------------------------chhhhheecCCCCcccceEEecCCCCCee
Confidence 578889999999999998 7888889999999999999976 45789
Q ss_pred EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc-cceEEeEEC--CCEEEEEe----CCCeEEEEcC-C-CceEEE
Q 003208 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAG----EDCTCRVWGS-D-GKQLKM 342 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s~~----~dg~i~vw~~-~-~~~~~~ 342 (839)
.+|+.||+|++||++..... .. ....++. .+..+++.. .+.+++|. .|..|.+||. . .+++..
T Consensus 88 ~s~ssDG~Vr~wD~Rs~~e~-----a~---~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 88 ISCSSDGTVRLWDIRSQAES-----AR---ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred EEeccCCeEEEEEeecchhh-----hh---eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 99999999999999986541 11 2334444 355566664 45666664 3678999999 3 333444
Q ss_pred e-ecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCc
Q 003208 343 I-KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (839)
Q Consensus 343 ~-~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (839)
+ ..|.. -|+++.|+|.. ++|++|+.||-|.+||++... ....+...-.+..
T Consensus 160 ~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~--------------------------EeDaL~~viN~~s 212 (376)
T KOG1188|consen 160 LNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN--------------------------EEDALLHVINHGS 212 (376)
T ss_pred hhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCc--------------------------chhhHHHhhcccc
Confidence 4 45666 59999999965 699999999999999995520 0001111112234
Q ss_pred ceEEEEEecCC--eEEEEeccceEEEEEecCCCCceeEEEeeec------CCCceEEeeecCCCCCCCCCCCcEEEEeCC
Q 003208 421 YVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVS------EGMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (839)
Q Consensus 421 ~v~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~ 492 (839)
.|.++.|..++ ++++-+..+....|++.......|....... ...--+.++.+ .+.+...+++++.
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~------~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH------SPGDKDTCALAGT 286 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc------cCCCcceEEEecc
Confidence 58999999988 8888888888888877665433332111000 01111112222 2334556666555
Q ss_pred -CccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecC
Q 003208 493 -KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (839)
Q Consensus 493 -dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~ 554 (839)
.|+..++-+..........-.......+...+.+ .++...+.+|.+|+.||.+.+|..+.
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~--i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD--ILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCCcHHHHHH--HhhhcccceeeccCCCceEEEEecCC
Confidence 6777777664311111111111222223333333 23446778999999999999999654
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.8e-16 Score=143.91 Aligned_cols=259 Identities=10% Similarity=0.132 Sum_probs=186.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeC--------CeeEEEECCCC---------eeeeEEeeecCceEEeEEeccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEAG---------TLIRPFQVFHGIRLHGISCNFINC 78 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~--------~~v~iwd~~~~---------~~~~~~~~~~~~~v~~i~~~~~~~ 78 (839)
|.+.|..|+-+ |- ..++|++... ..+.||.+... +.+..+....-.+|.|+.|.
T Consensus 62 ~agEvw~las~--P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~---- 132 (370)
T KOG1007|consen 62 HAGEVWDLASS--PF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE---- 132 (370)
T ss_pred CCcceehhhcC--CC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc----
Confidence 67889999988 86 3566666542 35789987532 23344442223379999999
Q ss_pred ccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCc
Q 003208 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~ 158 (839)
|++ ..+++-.+..|.+|+++....- .+ .-+...-.+|+...++-+|+|.. +++.+++.+ |++
T Consensus 133 ---Pns----~klasm~dn~i~l~~l~ess~~-va--------ev~ss~s~e~~~~ftsg~WspHH-dgnqv~tt~-d~t 194 (370)
T KOG1007|consen 133 ---PNS----DKLASMDDNNIVLWSLDESSKI-VA--------EVLSSESAEMRHSFTSGAWSPHH-DGNQVATTS-DST 194 (370)
T ss_pred ---CCC----CeeEEeccCceEEEEcccCcch-he--------eecccccccccceecccccCCCC-ccceEEEeC-CCc
Confidence 776 6677777999999999865410 00 00111112367778889998833 777887765 899
Q ss_pred EEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeE
Q 003208 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (839)
Q Consensus 159 i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (839)
+..||+++..+...++..+...+..+.| ++....+|++++.||.|++||.+
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDf--Npnkq~~lvt~gDdgyvriWD~R--------------------------- 245 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDF--NPNKQHILVTCGDDGYVRIWDTR--------------------------- 245 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccC--CCCceEEEEEcCCCccEEEEecc---------------------------
Confidence 9999999998888888777777777777 23334578899999999999998
Q ss_pred eecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccC-------------CCC---Cceeee-
Q 003208 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK-------------DSD---SIEEVG- 300 (839)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~-------------~~~---~~~~~~- 300 (839)
.+..++..+.+|..+|.++.|+|.. ..|++++.|..|.+|....-... ..+ ..+++.
T Consensus 246 -----~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 246 -----KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred -----CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 2566888999999999999999954 57889999999999987543211 000 011111
Q ss_pred --ceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC
Q 003208 301 --SSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 301 --~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~ 335 (839)
..++..|...|++++|+ |=.+++-+.||.+.|=.+
T Consensus 321 g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 13667899999999998 567889999999988665
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=9.2e-16 Score=147.50 Aligned_cols=258 Identities=18% Similarity=0.253 Sum_probs=179.6
Q ss_pred eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE----EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC
Q 003208 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL----FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR 130 (839)
Q Consensus 55 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~----~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (839)
+.+..-++.+..+|.-.+|....|...|. ++++ +|+|...+.-+.....- -...-...|
T Consensus 17 q~~K~e~CYddIrVs~~tWDS~fcavNPk------fiAvi~easgGgaf~ViPl~k~Gr~-----------d~~~P~v~G 79 (472)
T KOG0303|consen 17 QPVKNDQCYDDIRVSRVTWDSSFCAVNPK------FVAVIIEASGGGAFLVIPLVKTGRM-----------DASYPLVCG 79 (472)
T ss_pred cccchhhhhcceeeeeeeccccccccCCc------eEEEEEecCCCcceeeccccccccc-----------CCCCCCccC
Confidence 34444445566678888888776666664 3333 34566666666532200 122345679
Q ss_pred CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-------eEEEEecCCceeEEEEeeccCCccceEEEEeecCC
Q 003208 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
|+++|.+++|+|. +.+.||+||.|.+|.||.+.... .+..+.+|.+. +-.+.+|. ...+.|++++.|.
T Consensus 80 Ht~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr-Vg~V~wHP--tA~NVLlsag~Dn 154 (472)
T KOG0303|consen 80 HTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR-VGLVQWHP--TAPNVLLSAGSDN 154 (472)
T ss_pred ccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee-EEEEeecc--cchhhHhhccCCc
Confidence 9999999999994 67789999999999999996543 34555666654 33455543 3457899999999
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iw 283 (839)
.|.+|++. ++..+..+. |.+.|+++.|+.+|.+|++++.|+.||||
T Consensus 155 ~v~iWnv~---------------------------------tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 155 TVSIWNVG---------------------------------TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred eEEEEecc---------------------------------CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 99999998 666666666 99999999999999999999999999999
Q ss_pred EcccCccCCCCCceeeeceEeeccccc-eEEeEEC-CCEEEEEe----CCCeEEEEcC-C-Cce--EEEeecccCCceEE
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLT-DSFIITAG----EDCTCRVWGS-D-GKQ--LKMIKEHIGRGIWR 353 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~-~~~l~s~~----~dg~i~vw~~-~-~~~--~~~~~~h~~~~i~~ 353 (839)
|.+.++. +. ...+|.+. -..+.|- ...++|.+ .+..+-+||. + .++ ...+...+ +|.-
T Consensus 201 dpr~~~~-----v~-----e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~ 268 (472)
T KOG0303|consen 201 DPRRGTV-----VS-----EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLL 268 (472)
T ss_pred cCCCCcE-----ee-----ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--ceEE
Confidence 9999876 22 33455542 2233343 33355554 4678999998 2 222 33444433 4666
Q ss_pred EEEccCCCEEEEEe-CCCcEEEEecCCc
Q 003208 354 CLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (839)
Q Consensus 354 ~~~~~~~~~l~t~~-~dg~i~iw~~~~~ 380 (839)
--|+++.++++.+| .|+.||-|.++..
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecCC
Confidence 66788888776666 5999999999653
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.6e-17 Score=178.36 Aligned_cols=289 Identities=17% Similarity=0.324 Sum_probs=205.7
Q ss_pred eEEEEecCCCCCCCcceEEEee-----------CCeeEEEECC--CC----eeeeEEeeecCceEEeEEecccccccCCC
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLE--AG----TLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~--~~----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 83 (839)
--+|++ |+ +..++++|. +.++-||.+. +. +.+..++. ..+-+.++|. +.
T Consensus 10 a~~awS--p~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~-------~~ 75 (1049)
T KOG0307|consen 10 ATFAWS--PA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWG-------SY 75 (1049)
T ss_pred ceEEec--CC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeec-------cc
Confidence 356777 77 233666543 2345666543 22 24444443 3357889998 33
Q ss_pred ccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEE
Q 003208 84 STRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (839)
Q Consensus 84 ~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vw 162 (839)
|.....+|+++. ||.|.+|+...-.. .. ....+.+...|.+.|..+.|++. .+++||+|+.||.|.||
T Consensus 76 g~~~~GlIaGG~edG~I~ly~p~~~~~-~~--------~~~~la~~~~h~G~V~gLDfN~~--q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 76 GSHSHGLIAGGLEDGNIVLYDPASIIA-NA--------SEEVLATKSKHTGPVLGLDFNPF--QGNLLASGADDGEILIW 144 (1049)
T ss_pred CCCccceeeccccCCceEEecchhhcc-Cc--------chHHHhhhcccCCceeeeecccc--CCceeeccCCCCcEEEe
Confidence 321113566654 89999999875210 11 14667888999999999999992 55699999999999999
Q ss_pred ecCCCceEEEEecC-CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 163 DISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 163 d~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
|+.+.+.-...... ....+.++.+ +-.....|++++.+|.+.|||++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr------------------------------ 192 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLR------------------------------ 192 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceecccc------------------------------
Confidence 99876544333211 1222333333 23345678999999999999999
Q ss_pred ccccceeeEEEecCCC--CeEEEEEcCCC-CEEEEEeCCC---cEEEEEcccCccCCCCCceeeeceEeeccccceEEeE
Q 003208 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (839)
Q Consensus 242 ~~~~~~~~~~~~~h~~--~V~~l~~~~~~-~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 315 (839)
..+++-.+..|.+ .+..|+|+|+. ..|+++++|. .|.+||++..... .+ .+.+|...|.++.
T Consensus 193 ---~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP----~k-----~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 193 ---KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP----LK-----ILEGHQRGILSLS 260 (1049)
T ss_pred ---CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc----hh-----hhcccccceeeec
Confidence 4555555554443 47789999976 5677777654 5999999875431 22 6789999999999
Q ss_pred EC---CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEEeCCCcEEEEecCC
Q 003208 316 LT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 316 ~~---~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~~dg~i~iw~~~~ 379 (839)
|+ +.+++|++.|+.+.+|+. +++.+..+..... -+..+.|+|... .++.++.||.|.|+.+.+
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 98 489999999999999999 8899999987555 588899998765 888999999999999954
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=3.7e-15 Score=139.67 Aligned_cols=260 Identities=17% Similarity=0.237 Sum_probs=178.4
Q ss_pred EEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee----c
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK----V 143 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~----~ 143 (839)
.++..|+ |||. .+|+.+.|..+++|++....-....-.+ ..+...+...+. ..+.|...+|-+ .
T Consensus 52 ~kgckWS-------PDGS---ciL~~sedn~l~~~nlP~dlys~~~~~~-~~~~~~~~~r~~-eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 52 LKGCKWS-------PDGS---CILSLSEDNCLNCWNLPFDLYSKKADGP-LNFSKHLSYRYQ-EGETVYDYCWYSRMKSD 119 (406)
T ss_pred hccceeC-------CCCc---eEEeecccCeeeEEecChhhcccCCCCc-cccccceeEEec-cCCEEEEEEeeeccccC
Confidence 4556677 9995 7777788999999999754311111000 001112222221 235677777753 1
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCceEEEEecC----CceeEEEEeeccCCccceEEEEeecCCeEEEEEee-ccccccC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAPL 218 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~-~~~~~~~ 218 (839)
.++..++|+.+.|.-|++||.-+++....++.- +-....++.| ++||.+|++|. ...|++||.. .++.-+
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F---s~DGeqlfaGy-krcirvFdt~RpGr~c~- 194 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF---SPDGEQLFAGY-KRCIRVFDTSRPGRDCP- 194 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe---cCCCCeEeecc-cceEEEeeccCCCCCCc-
Confidence 137788999999999999999999887665421 1223455665 79999999885 5899999984 111000
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCce
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 297 (839)
+ -....+--.+..+.|.+++|+|.. +.++.++.-.++-|+.-..... +
T Consensus 195 --------------------v-----y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-----l- 243 (406)
T KOG2919|consen 195 --------------------V-----YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-----L- 243 (406)
T ss_pred --------------------c-----hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-----e-
Confidence 0 000111123457889999999954 5899999999988888777655 2
Q ss_pred eeeceEeeccccceEEeEEC--CCEEEEEeC-CCeEEEEcC--CCceEEEeecccCCceEEEE--EccCCCEEEEEeCCC
Q 003208 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--DGKQLKMIKEHIGRGIWRCL--YDSLSSLLVTAGFDS 370 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~--~~~~~~~~~~h~~~~i~~~~--~~~~~~~l~t~~~dg 370 (839)
..+.+|.+.|+.++|. ++.|++|.. |-.|..||+ ...++..+..|.+..-..|. ..|++++|++|+.||
T Consensus 244 ----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 244 ----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred ----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 3778999999999998 788888864 678999999 56777777777652233444 468999999999999
Q ss_pred cEEEEecCC
Q 003208 371 AIKVHQFQA 379 (839)
Q Consensus 371 ~i~iw~~~~ 379 (839)
.|++||++.
T Consensus 320 ~V~vwdlk~ 328 (406)
T KOG2919|consen 320 SVRVWDLKD 328 (406)
T ss_pred cEEEEecCC
Confidence 999999965
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.1e-14 Score=134.61 Aligned_cols=261 Identities=15% Similarity=0.194 Sum_probs=182.7
Q ss_pred CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-----CcEEEEEEeeccCCCCCCCCCccccceeeeEec
Q 003208 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (839)
Q Consensus 54 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-----~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (839)
++.+.++.. ..++.++.|+.. ++.+ ..+++++ .+.|.|..+.... ++.+..-
T Consensus 35 ~~eiy~Y~a--p~~lya~~Ws~~-----~~~~---~rla~gS~~Ee~~Nkvqiv~ld~~s-------------~e~~~~a 91 (364)
T KOG0290|consen 35 RKEIYTYNA--PWPLYAMNWSVR-----PDKK---FRLAVGSFIEEYNNKVQIVQLDEDS-------------GELVEDA 91 (364)
T ss_pred cceEEEecC--CCceeeeccccC-----CCcc---eeEEEeeeccccCCeeEEEEEccCC-------------CceeccC
Confidence 344555554 346899999854 5543 6677764 4789999887543 2222211
Q ss_pred -cCCCcceEEEEEeecc--CCCcEEEEEeCCCcEEEEecCCC--ceE--EEEe----cCCceeEEEEeeccCCccceEEE
Q 003208 129 -PRLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNS--SII--LEVH----SPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 129 -~~h~~~I~~~~~~~~~--~~~~~las~~~d~~i~vwd~~~~--~~~--~~~~----~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
-.|.-+++.+-|.|.. ...++|||.+ ..+|+|.+... +.. ..+. .+....+.+..+ ...+..+|.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~ig 167 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIG 167 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeE
Confidence 3688999999999932 1124677764 47999998742 211 1111 122233444443 456778999
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSD 276 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~ 276 (839)
+.+.|-+..|||++.+. .+.....+-+|..+|+.|+|...+ ..+++++.
T Consensus 168 tSSiDTTCTiWdie~~~------------------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGV------------------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred eecccCeEEEEEEeecc------------------------------ccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 99999999999998210 223345677899999999999865 57899999
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCC-CeEEEEcC--CCceEEEeecccCCc
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED-CTCRVWGS--DGKQLKMIKEHIGRG 350 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~d-g~i~vw~~--~~~~~~~~~~h~~~~ 350 (839)
||.+|+||++..+. ...+ +.-.....+...++|+ ++++++-..| ..|.+.|+ ...++.++++|.+ .
T Consensus 218 DGSvRmFDLR~leH-----STII--YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~ 289 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEH-----STII--YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-S 289 (364)
T ss_pred CCcEEEEEeccccc-----ceEE--ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-c
Confidence 99999999998654 1111 0111114567778887 6888887776 46888998 6788999999999 6
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEecCC
Q 003208 351 IWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 351 i~~~~~~~~~-~~l~t~~~dg~i~iw~~~~ 379 (839)
|..++|.|.. ..|+|+|.|..+.+||++.
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999999965 6899999999999999965
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=9.7e-13 Score=145.01 Aligned_cols=372 Identities=19% Similarity=0.289 Sum_probs=248.4
Q ss_pred eccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-eEEEEecCCceeEEEEeeccCCccce-EEEE-eecCC
Q 003208 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEAL-RIAS-GTIYN 203 (839)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~s-g~~dg 203 (839)
.+..|...|.++.+.+ .+..++.++.|+.+.+|+..... ....+.......+..+... .+++. .++. +..|+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCc
Confidence 4557889999999999 99999999999999999998886 5555554222122222221 23444 4444 44499
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc-ceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~ 281 (839)
.+.+|+.. . ......+..|...|..++|+|++..+++++. |+.++
T Consensus 135 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 135 TVKLWDLS---------------------------------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cEEEEEec---------------------------------CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 99999987 4 5677788899999999999999998888886 99999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEECC--C-EEEEEeCCCeEEEEcC-CCceEE-EeecccCCceEEEEE
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S-FIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLY 356 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~~~dg~i~vw~~-~~~~~~-~~~~h~~~~i~~~~~ 356 (839)
+|+...... . ..+.+|...|.+++|.+ . .+++++.|+.+++||. .+..+. .+..|.. .. ...|
T Consensus 182 ~~~~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~ 249 (466)
T COG2319 182 LWDLRTGKP-----L-----STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSF 249 (466)
T ss_pred EEEcCCCce-----E-----EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeE
Confidence 999987443 2 26667999999999983 3 5556699999999988 566776 6777876 33 3379
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEE
Q 003208 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYI 435 (839)
Q Consensus 357 ~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 435 (839)
++++..+++++.|+.+++|+...... .+... ..+...+.++.|.|++ .+++
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~~~------------~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSS----------------LLRTL------------SGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCc----------------EEEEE------------ecCCccEEEEEECCCCCEEEE
Confidence 99998899999999999999854211 00000 2334678899999955 4455
Q ss_pred EeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeE
Q 003208 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFT 515 (839)
Q Consensus 436 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~ 515 (839)
++.++.+..++........... ...+ ...+..+.+ .. ........+..|+.+.+|++.... . ...
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~------~~~~~~~~~~~d~~~~~~~~~~~~-~---~~~-- 366 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLT-LKGH-EGPVSSLSF-SP------DGSLLVSGGSDDGTIRLWDLRTGK-P---LKT-- 366 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEee-eccc-CCceEEEEE-CC------CCCEEEEeecCCCcEEeeecCCCc-e---eEE--
Confidence 5556555554333222211111 1122 224555555 31 012334444678899999886644 1 111
Q ss_pred eeccceeEEeeEEEeecCCCeEEE-EeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCE
Q 003208 516 WSAGIERQLLGTYWCKSLGHRFIF-TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594 (839)
Q Consensus 516 ~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~ 594 (839)
.... ..... ..+.+ ....+ .+..++.+.+|+....... ..+. .+...+....+++++..
T Consensus 367 ~~~~--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~ 426 (466)
T COG2319 367 LEGH--SNVLS--VSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL--------------RNLD-GHTSRVTSLDFSPDGKS 426 (466)
T ss_pred ecCC--ceEEE--EEECC-CCCEEEEecCCCceEEEecccCeee--------------eecc-CCCCcEEEEEECCCCcE
Confidence 1111 11222 23444 33333 3788999999999865421 1111 11167889999999999
Q ss_pred EEEecCCccEEEEeccc
Q 003208 595 LFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 595 la~gs~dg~i~iw~~~~ 611 (839)
++.++.++.+.+|+...
T Consensus 427 ~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 427 LASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecCCCcEEEEeccC
Confidence 99999999999999883
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=1.5e-15 Score=140.24 Aligned_cols=246 Identities=16% Similarity=0.243 Sum_probs=169.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe--e--eeEEe----eecCceEEeEEecccccccCCCccce
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--L--IRPFQ----VFHGIRLHGISCNFINCTEGSVSTRV 87 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~--~--~~~~~----~~~~~~v~~i~~~~~~~~~~~~~~~~ 87 (839)
|..|+|.+-|. |+..+...-|++.++..+|+|.+...+ . ...+. .+...++++..|+... |
T Consensus 95 ~~YP~tK~~wi--Pd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d----p----- 163 (364)
T KOG0290|consen 95 HPYPVTKLMWI--PDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD----P----- 163 (364)
T ss_pred CCCCccceEec--CCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC----c-----
Confidence 77899999999 983323345666666799999987422 1 11111 1223468888887321 2
Q ss_pred eeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 88 TFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 88 ~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
.++.+ +-|-+..|||++.+. .+.....|-.|...|.+++|.. ...+.+|+.+.||.||++|++.
T Consensus 164 -~~igtSSiDTTCTiWdie~~~------------~~~vkTQLIAHDKEV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 164 -NLIGTSSIDTTCTIWDIETGV------------SGTVKTQLIAHDKEVYDIAFLK--GSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred -ceeEeecccCeEEEEEEeecc------------ccceeeEEEecCcceeEEEecc--CccceEEEecCCCcEEEEEecc
Confidence 34444 459999999999752 1445567778999999999987 2346899999999999999987
Q ss_pred CceEEEE-ecCC-ceeEEEEeeccCCccceEEEEeec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 167 SSIILEV-HSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 167 ~~~~~~~-~~~~-~~~~~s~~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
.+--..+ +.+. ...+.-+. +...+.+++|+-.. ...|.|.|++
T Consensus 229 leHSTIIYE~p~~~~pLlRLs--wnkqDpnymATf~~dS~~V~iLDiR-------------------------------- 274 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPLLRLS--WNKQDPNYMATFAMDSNKVVILDIR-------------------------------- 274 (364)
T ss_pred cccceEEecCCCCCCcceeec--cCcCCchHHhhhhcCCceEEEEEec--------------------------------
Confidence 6543222 3333 22333333 34556678887444 4679999998
Q ss_pred ccceeeEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CC
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DS 319 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~ 319 (839)
....++..+++|.+.|++|+|.|. ...|++|++|..+.+||+...... ....+.....-...|..++|+ +.
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCchhhhhccceeeeeeecccCCC
Confidence 246788899999999999999995 468999999999999999875331 111111233356789999998 57
Q ss_pred EEEEEeC
Q 003208 320 FIITAGE 326 (839)
Q Consensus 320 ~l~s~~~ 326 (839)
.++.+..
T Consensus 350 wiai~~~ 356 (364)
T KOG0290|consen 350 WIAICFG 356 (364)
T ss_pred EEEEEec
Confidence 7776653
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1.1e-12 Score=144.59 Aligned_cols=365 Identities=22% Similarity=0.346 Sum_probs=249.8
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-eeeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
.|...|.++.|. +. +..++.+. ++.+.+|+...+. .+..+.......+..+.+. . +++. ..++
T Consensus 63 ~~~~~i~~~~~~--~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~---~~~~ 127 (466)
T COG2319 63 GHEDSITSIAFS--PD----GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-S-----PDGN---SILL 127 (466)
T ss_pred eccceEEEEEEC--CC----CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-C-----CCcc---eEEe
Confidence 477889999999 77 67777766 9999999998876 6666665333346666662 2 6652 2333
Q ss_pred E-Ec-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCCce
Q 003208 93 L-FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSI 169 (839)
Q Consensus 93 ~-~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~~~ 169 (839)
. .. ++.+.+|+.... ......+..|...|.+++|+| ++..+++++. |+.+++|+...+..
T Consensus 128 ~~~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 128 ASSSLDGTVKLWDLSTP--------------GKLIRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred ccCCCCccEEEEEecCC--------------CeEEEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCce
Confidence 3 34 899999999741 356778889999999999999 8888888885 99999999998777
Q ss_pred EEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
+..+..+. ..+..+.+ .+++. .+++++.|+.|++||.. ....
T Consensus 191 ~~~~~~~~-~~v~~~~~---~~~~~~~~~~~~~d~~i~~wd~~---------------------------------~~~~ 233 (466)
T COG2319 191 LSTLAGHT-DPVSSLAF---SPDGGLLIASGSSDGTIRLWDLS---------------------------------TGKL 233 (466)
T ss_pred EEeeccCC-CceEEEEE---cCCcceEEEEecCCCcEEEEECC---------------------------------CCcE
Confidence 77776633 34555665 35665 55556999999999766 4445
Q ss_pred eE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEe
Q 003208 249 LF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAG 325 (839)
Q Consensus 249 ~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~ 325 (839)
+. .+.+|...+ ...|+|++..+++++.|+.+++|+...... .+ ....+|...+.++.|.+ ..+++++
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~--~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LL--RTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EE--EEEecCCccEEEEEECCCCCEEEEee
Confidence 55 578888876 448999998999999999999999986542 11 13367889999999984 7788899
Q ss_pred CCCeEEEEcC-CCceEEEee--cccCCceEEEEEccCCCEEEEE-eCCCcEEEEecCCcCccCcCCCCcccccCCCcceE
Q 003208 326 EDCTCRVWGS-DGKQLKMIK--EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (839)
Q Consensus 326 ~dg~i~vw~~-~~~~~~~~~--~h~~~~i~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (839)
.|+.+++|+. ......... .|.. .+..+.+.+++..++.+ ..|+.+.+|+..... . ..
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~----------------~~ 365 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P----------------LK 365 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-e----------------eE
Confidence 9999999988 444444444 6665 58888884332455555 678899999985432 0 00
Q ss_pred EeecCCCccceeeccCCCcceEEEEEecCCeEEEE--eccceEEEEEecCCCCceeEEEeeecCC-CceEEeeecCCCCC
Q 003208 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA--TNHGYLYHTKLCDMDSVNWNKILQVSEG-MPIICMDLLSNEPK 478 (839)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 478 (839)
... ....+..+.+.+ ...+.+ ..++.+..++....... .. .... ..+......+.
T Consensus 366 ~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~--- 423 (466)
T COG2319 366 TLE-------------GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL---RN--LDGHTSRVTSLDFSPD--- 423 (466)
T ss_pred Eec-------------CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeee---ee--ccCCCCcEEEEEECCC---
Confidence 000 001156666666 433333 45666665554333211 11 1111 34444444333
Q ss_pred CCCCCCcEEEEeCCCccEEEEEEcC
Q 003208 479 YPCGIDDWVALGDGKGNMTIVRVVG 503 (839)
Q Consensus 479 ~~~~~~~~l~~g~~dg~i~l~~~~~ 503 (839)
...++.++.++.+++|+...
T Consensus 424 -----~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 424 -----GKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -----CcEEEEecCCCcEEEEeccC
Confidence 36777788899999998865
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.3e-15 Score=143.11 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=204.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC------CeeeeEEeeecCceEEeEEecccccccCCCcccee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 88 (839)
|.+-|.+|.|+ .+ +++|++|. |-.+++|++.. .+++.....++...|.+++|. ..+.
T Consensus 55 H~GCiNAlqFS--~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-------~~N~--- 118 (609)
T KOG4227|consen 55 HTGCINALQFS--HN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-------LENR--- 118 (609)
T ss_pred hccccceeeec--cC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-------cCCe---
Confidence 88999999999 55 89999988 68999999853 456666666676679999998 4431
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.++....+++|..-|+++.+ --.+..-....+.|+.+..+| ..+.|++.+.++.|.+||.+..+
T Consensus 119 ~~~SG~~~~~VI~HDiEt~q-------------si~V~~~~~~~~~VY~m~~~P---~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQ-------------SIYVANENNNRGDVYHMDQHP---TDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eEecCCCcceeEeeecccce-------------eeeeecccCcccceeecccCC---CCceEEEEecCceEEEEeccCCC
Confidence 44444458999999998643 111222223345999999999 78899999999999999998755
Q ss_pred e-EEE-EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 169 I-ILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 169 ~-~~~-~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
. +.. +........+++.|+ +....+|++.+..+-+-+||.+. ..
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~--P~~P~Li~~~~~~~G~~~~D~R~--------------------------------~~ 228 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFH--PETPALILVNSETGGPNVFDRRM--------------------------------QA 228 (609)
T ss_pred CCCceeeecCCCccceeeeec--CCCceeEEeccccCCCCceeecc--------------------------------cc
Confidence 2 211 112223446677775 34456888999999999999881 11
Q ss_pred eeeEE------EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc-------ccceEE
Q 003208 247 VNLFR------LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-------NARVWD 313 (839)
Q Consensus 247 ~~~~~------~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~ 313 (839)
.++.. +......-.++.|+|.|+.|++--.-..-.+||+....+. .....| ...+.+
T Consensus 229 ~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~----------V~k~D~N~~GY~N~~T~KS 298 (609)
T KOG4227|consen 229 RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF----------VLKSDHNPNGYCNIKTIKS 298 (609)
T ss_pred chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce----------eEeccCCCCcceeeeeeee
Confidence 11111 1111223367889999999988777666778888775541 111222 235677
Q ss_pred eEEC-CCEEEEEeCCCeEEEEcCC------C------------------ceEEEeecccCCceEEEEEccCCCEEEEEeC
Q 003208 314 CCLT-DSFIITAGEDCTCRVWGSD------G------------------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 314 ~~~~-~~~l~s~~~dg~i~vw~~~------~------------------~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
++|. +..+++|+.+-.|++|.+. | +.+..+++|.. -+..+.|+|...+|++.|-
T Consensus 299 ~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGV 377 (609)
T KOG4227|consen 299 MTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGV 377 (609)
T ss_pred eeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccch
Confidence 8887 5669999999999999872 1 24567889988 5888999999999999999
Q ss_pred CCcEEEEec
Q 003208 369 DSAIKVHQF 377 (839)
Q Consensus 369 dg~i~iw~~ 377 (839)
.+.+++|..
T Consensus 378 E~~~KlWS~ 386 (609)
T KOG4227|consen 378 ENSFKLWSD 386 (609)
T ss_pred hhheecccc
Confidence 999999986
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.1e-14 Score=126.79 Aligned_cols=245 Identities=11% Similarity=0.134 Sum_probs=170.3
Q ss_pred EEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (839)
|..-+++ |.++ .+++...+|.|.++.+..... ..++.|. ...+...++|.++|+.++|+.
T Consensus 13 vf~qa~s-------p~~~---~l~agn~~G~iav~sl~sl~s-~sa~~~g----k~~iv~eqahdgpiy~~~f~d----- 72 (325)
T KOG0649|consen 13 VFAQAIS-------PSKQ---YLFAGNLFGDIAVLSLKSLDS-GSAEPPG----KLKIVPEQAHDGPIYYLAFHD----- 72 (325)
T ss_pred HHHHhhC-------Ccce---EEEEecCCCeEEEEEehhhhc-cccCCCC----CcceeeccccCCCeeeeeeeh-----
Confidence 5555666 6663 555556689999999975332 2222221 234455689999999999963
Q ss_pred cEEEEEeCCCcEEEEecCCCce------EEEEecCC------ceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 148 RSLAIGCSDNSIRVWDISNSSI------ILEVHSPE------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 148 ~~las~~~d~~i~vwd~~~~~~------~~~~~~~~------~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
.+|++|+ ||.|+=|....... +.....+. -..+.++-+ .|..+-|+.++.|+.++-||++
T Consensus 73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l---dP~enSi~~AgGD~~~y~~dlE---- 144 (325)
T KOG0649|consen 73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL---DPSENSILFAGGDGVIYQVDLE---- 144 (325)
T ss_pred hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe---ccCCCcEEEecCCeEEEEEEec----
Confidence 5677776 69999987754322 11111111 122334433 4556666666689999999999
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 295 (839)
+++....++||++.|.++.-......+++|++||++|+||.++.+.
T Consensus 145 -----------------------------~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~----- 190 (325)
T KOG0649|consen 145 -----------------------------DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH----- 190 (325)
T ss_pred -----------------------------CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-----
Confidence 8888899999999999999866677899999999999999999876
Q ss_pred ceeeece----Eeecc-ccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 296 IEEVGSS----VLYGH-NARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 296 ~~~~~~~----~~~~h-~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
++.+.+. .+..| ..+|.+++-+...++.|+ ...+.+|.+ ..++...+.-. . ++..+.|.. ..++.+|..
T Consensus 191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpip-a-~v~~v~F~~--d~vl~~G~g 265 (325)
T KOG0649|consen 191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIP-A-RVHLVDFVD--DCVLIGGEG 265 (325)
T ss_pred eEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecc-c-ceeEeeeec--ceEEEeccc
Confidence 4444321 22223 345778888778887776 457999999 66666666543 3 477788865 467888888
Q ss_pred CcEEEEecCC
Q 003208 370 SAIKVHQFQA 379 (839)
Q Consensus 370 g~i~iw~~~~ 379 (839)
+.|.-|.+.+
T Consensus 266 ~~v~~~~l~G 275 (325)
T KOG0649|consen 266 NHVQSYTLNG 275 (325)
T ss_pred cceeeeeecc
Confidence 8999998866
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.2e-15 Score=146.69 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=155.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.|-|.||+++ .+ |.+|++|+ |-.+.|||.-.-+++..+.-.|...|.++.|-|. .++ ..++.++
T Consensus 49 H~GCVN~LeWn--~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~-----tnn---riv~sgA 114 (758)
T KOG1310|consen 49 HTGCVNCLEWN--AD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY-----TNN---RIVLSGA 114 (758)
T ss_pred ccceecceeec--CC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc-----CCC---eEEEecc
Confidence 88999999999 88 99999999 6899999999888898888766667999999854 232 1556667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC-cEEEEEeCCCcEEEEecCCCceE---
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSII--- 170 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~--- 170 (839)
+|..|+++|+......+.. ..-.+..+.+..|.+.|..++..| ++ +.+-+++.||+|+-+|++....-
T Consensus 115 gDk~i~lfdl~~~~~~~~d-----~~~~~~~~~~~cht~rVKria~~p---~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMD-----HGMEETTRCWSCHTDRVKRIATAP---NGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CcceEEEEecccccccccc-----cCccchhhhhhhhhhhhhheecCC---CCCceEEEecCCcceeeecccCCccCCcc
Confidence 8999999999853311110 011345566778999999999998 66 78889999999999999763211
Q ss_pred E----EEe--cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 171 L----EVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 171 ~----~~~--~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
. .+. .+..-.+.++.. .+.+..+|++|+.|-..++||.+..............++ ....++++-+....
T Consensus 187 ~~~~~~l~ny~~~lielk~lti--sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p---p~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTI--SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP---PKDCRCVRYFSPGH 261 (758)
T ss_pred ccccHHHHHhchhhheeeeeee--cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC---CcccchhheecCcc
Confidence 0 000 111122334443 245567999999999999999641100000000000000 11223333333221
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
.......+.---..++-+.|+|+|..|+..-.-..|+++|+...+
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 100000000001124567899999877666555689999987544
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=2.3e-14 Score=138.82 Aligned_cols=269 Identities=14% Similarity=0.188 Sum_probs=180.0
Q ss_pred EeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEE
Q 003208 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (839)
Q Consensus 60 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (839)
+.-|...+|..+.|. +++.+ .+.++++|..|+||.+......+. ....+....|..|...|+++.
T Consensus 8 i~wH~~~pv~s~dfq-------~n~~~--~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQ-------KNSLN--KLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred EEecCCCceEEEEec-------cCccc--ceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEE
Confidence 333455578888888 44321 344445699999999986542111 023567788999999999999
Q ss_pred EeeccCCCcEEEEEeCCCcEEEEecC--------C-----C--ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCe
Q 003208 140 FLKVCNGNRSLAIGCSDNSIRVWDIS--------N-----S--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 140 ~~~~~~~~~~las~~~d~~i~vwd~~--------~-----~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
|+| +|++||+|+.+|.|.+|-.. + . ..+...-...+.-+|.+++ ++++..+++|+.|+.
T Consensus 73 f~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W---s~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 73 FSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW---SPDSNFLVSGSVDNS 146 (434)
T ss_pred EcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc---cCCCceeeeeeccce
Confidence 999 99999999999999999876 2 1 1112222223344666665 689999999999999
Q ss_pred EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003208 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 205 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd 284 (839)
+++||+. .+.....+.+|...|..++|.|.++++++-+.|+..+.+.
T Consensus 147 ~~l~Dv~---------------------------------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 147 VRLWDVH---------------------------------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred EEEEEec---------------------------------cceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 9999999 7788888888999999999999888888888887666655
Q ss_pred cccCccC--------------------------------------CC---------------CCceee------------
Q 003208 285 VRAEYWK--------------------------------------DS---------------DSIEEV------------ 299 (839)
Q Consensus 285 ~~~~~~~--------------------------------------~~---------------~~~~~~------------ 299 (839)
+...... .+ ......
T Consensus 194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r 273 (434)
T KOG1009|consen 194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR 273 (434)
T ss_pred eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence 4432211 00 000000
Q ss_pred eceEeeccccceEEeEECC-------------------CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccC
Q 003208 300 GSSVLYGHNARVWDCCLTD-------------------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 300 ~~~~~~~h~~~v~~~~~~~-------------------~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~ 359 (839)
....+..-..++..+.|++ ++++.......|.+||. .-.++....+-+...|+.++|+++
T Consensus 274 P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 274 PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCC
Confidence 0011112222333333331 23333344557999998 445555554433337999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCcCc
Q 003208 360 SSLLVTAGFDSAIKVHQFQAFLP 382 (839)
Q Consensus 360 ~~~l~t~~~dg~i~iw~~~~~~~ 382 (839)
|..++..+.||...+..++...+
T Consensus 354 g~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 354 GSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred CcEEEEeccCCceEEEEEcchhc
Confidence 99999999999998888765444
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=1.7e-16 Score=166.08 Aligned_cols=268 Identities=16% Similarity=0.213 Sum_probs=199.1
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~- 93 (839)
|..+|.|+.|. .. ++++++|+ |..++||..+++..+..+++|.+ .|+.++++ .++ .++++
T Consensus 189 H~naVyca~fD--rt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs-------~~n----~~iaaa 250 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RT----GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVS-------SNN----TMIAAA 250 (1113)
T ss_pred hhhheeeeeec--cc----cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccc-------hhh----hhhhhc
Confidence 77889999999 66 89999999 68899999999999999999877 69999998 444 44444
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
+.|..|++|.+.. +.++..+.+|++.|++++|+| .++.+.||++++||.. ...+...
T Consensus 251 S~D~vIrvWrl~~---------------~~pvsvLrghtgavtaiafsP-------~~sss~dgt~~~wd~r-~~~~~y~ 307 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPD---------------GAPVSVLRGHTGAVTAIAFSP-------RASSSDDGTCRIWDAR-LEPRIYV 307 (1113)
T ss_pred ccCceEEEEecCC---------------CchHHHHhccccceeeeccCc-------cccCCCCCceEecccc-ccccccC
Confidence 5689999999986 568889999999999999999 3477889999999997 1111111
Q ss_pred ----ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 174 ----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 174 ----~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
.......+.++.+ ...+...++|+.|+.-..|... .
T Consensus 308 prp~~~~~~~~~~s~~~---~~~~~~f~Tgs~d~ea~n~e~~---------------------------------~---- 347 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILF---ENNGDRFLTGSRDGEARNHEFE---------------------------------Q---- 347 (1113)
T ss_pred CCCCCcccccceeeeec---cccccccccccCCcccccchhh---------------------------------H----
Confidence 1112233334433 3556778889888888877654 0
Q ss_pred EEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEe
Q 003208 250 FRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~ 325 (839)
+..|...+.-+.++.+ ..+.+++-.+-.+++|++.++... ..+.+|...+..+.++ +....+++
T Consensus 348 --l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~----------H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 348 --LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL----------HNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred --hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhh----------hhhcccccceeeeeecCCCcHhhhhcc
Confidence 1112222222222222 245666777788999999987652 3778899999999888 46778999
Q ss_pred CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 326 ~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.||...|||+ .|.+++.+...++ .+..-+|+++|..++....-|.+.|...
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999999 7777766554344 3677799999999888888899988876
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7e-14 Score=125.94 Aligned_cols=287 Identities=16% Similarity=0.157 Sum_probs=189.0
Q ss_pred eeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC---------Ce-eeeEEeeecCceEEeEEecccccccCCCccce
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---------GT-LIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~---------~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 87 (839)
.|.+-+++ |. ++++++|+ +|.|.++.+++ |+ .+-..+.|++ +|..++|. |
T Consensus 12 tvf~qa~s--p~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~--------d---- 72 (325)
T KOG0649|consen 12 TVFAQAIS--PS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH--------D---- 72 (325)
T ss_pred HHHHHhhC--Cc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee--------h----
Confidence 45566777 77 88999999 89999998764 22 2334455554 89999997 2
Q ss_pred eeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC---CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR---LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 88 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
.++.+++||.|+=|.+...... ....+ .++....++. .--.|+++-+.| ..+-++.++.|+.++.||+
T Consensus 73 -~~Lls~gdG~V~gw~W~E~~es-~~~K~----lwe~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 73 -DFLLSGGDGLVYGWEWNEEEES-LATKR----LWEVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQVDL 143 (325)
T ss_pred -hheeeccCceEEEeeehhhhhh-ccchh----hhhhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEEEEe
Confidence 6778888999999998753310 00000 0111111111 113588999988 6665666668999999999
Q ss_pred CCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 165 SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
++++..+++++|..- +.++.. -.....|++|+.||++++||.++.+......
T Consensus 144 E~G~i~r~~rGHtDY-vH~vv~---R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie------------------------ 195 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDY-VHSVVG---RNANGQILSGAEDGTVRVWDTKTQKHVSMIE------------------------ 195 (325)
T ss_pred cCCEEEEEEcCCcce-eeeeee---cccCcceeecCCCccEEEEeccccceeEEec------------------------
Confidence 999999999888643 333332 1334579999999999999999332211100
Q ss_pred cceeeEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEE
Q 003208 245 TAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIIT 323 (839)
Q Consensus 245 ~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s 323 (839)
..+.-..++.|. .+|-+++-+ ..+|++|+. ..+.+|.++..+. .....-..++..+.|....+++
T Consensus 196 ~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~-----------t~vfpipa~v~~v~F~~d~vl~ 261 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSES-----------TCVFPIPARVHLVDFVDDCVLI 261 (325)
T ss_pred cccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCc-----------eEEEecccceeEeeeecceEEE
Confidence 000011122233 357777664 457777655 5799999998776 2444556778889999999999
Q ss_pred EeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEe
Q 003208 324 AGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 324 ~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~ 376 (839)
+++.+.+.-|.+.|..-........ ..++..++..- ++|-.+|..+.+.++.
T Consensus 262 ~G~g~~v~~~~l~Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 262 GGEGNHVQSYTLNGVLQANIPVEST-ACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eccccceeeeeeccEEEEeccCCcc-ceeeecccCCceEEEEecccceeeeeee
Confidence 9999999999998877666655443 35566554332 4566667677776653
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.9e-15 Score=139.92 Aligned_cols=312 Identities=13% Similarity=0.151 Sum_probs=206.9
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC------CCceEEEEecCCceeEEEEeeccCCccceE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS------NSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 195 (839)
.-+.+.+.+|.+-|+++.|+. ++++||+|+.|..+++|++. +.+++.....++++.++++.| ......
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~~ 119 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENRF 119 (609)
T ss_pred chhhhhhhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCee
Confidence 334556789999999999999 99999999999999999985 346677777788889999998 567789
Q ss_pred EEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe--cCCCCeEEEEEcCCCCEEEE
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVS 273 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s 273 (839)
+++|..+++|.+-|+. +.+.+..+. ...+.|+.+..+|..+.|++
T Consensus 120 ~~SG~~~~~VI~HDiE---------------------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~ 166 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIE---------------------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLIV 166 (609)
T ss_pred EecCCCcceeEeeecc---------------------------------cceeeeeecccCcccceeecccCCCCceEEE
Confidence 9999999999999998 444444443 22359999999999999999
Q ss_pred EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcCC--CceEEEeecccC
Q 003208 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD--GKQLKMIKEHIG 348 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~--~~~~~~~~~h~~ 348 (839)
.+.++.|.+||.+..... ..+ +......+....+.|+ |.+|++.+..+-+-+||.. ...+.......+
T Consensus 167 ~t~~~~V~~~D~Rd~~~~----~~~---~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~ 239 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNP----ISL---VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG 239 (609)
T ss_pred EecCceEEEEeccCCCCC----Cce---eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc
Confidence 999999999999886531 222 2333445667788888 6899999999999999983 222222211111
Q ss_pred -----CceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceE
Q 003208 349 -----RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (839)
Q Consensus 349 -----~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 423 (839)
..-.+..|+|+|..+++--....-.+||+-.+.+..++... .|+..- ....++
T Consensus 240 L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~---------------N~~GY~-------N~~T~K 297 (609)
T KOG4227|consen 240 LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH---------------NPNGYC-------NIKTIK 297 (609)
T ss_pred CcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC---------------CCCcce-------eeeeee
Confidence 01245679999988877666656667777332111111000 011110 113488
Q ss_pred EEEEecCCeEEEEeccceEEEEEecCCCC-ceeEEEeeecC--------CCceEEeeecCCC--CCCCCCCCcEEEEeCC
Q 003208 424 CLHLTSEDTLYIATNHGYLYHTKLCDMDS-VNWNKILQVSE--------GMPIICMDLLSNE--PKYPCGIDDWVALGDG 492 (839)
Q Consensus 424 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~~--------~~~v~~~~~~~~~--~~~~~~~~~~l~~g~~ 492 (839)
+++|..|-.++.++.+=.|++|++..... ..+.++-...+ ....+.+.-+-+- ..-..+...++++.+-
T Consensus 298 S~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV 377 (609)
T KOG4227|consen 298 SMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV 377 (609)
T ss_pred eeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch
Confidence 99999887777777777889888764322 22222211111 1112222211111 1111245577888888
Q ss_pred CccEEEEEE
Q 003208 493 KGNMTIVRV 501 (839)
Q Consensus 493 dg~i~l~~~ 501 (839)
...++||.-
T Consensus 378 E~~~KlWS~ 386 (609)
T KOG4227|consen 378 ENSFKLWSD 386 (609)
T ss_pred hhheecccc
Confidence 889999953
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=3.1e-14 Score=133.72 Aligned_cols=224 Identities=13% Similarity=0.122 Sum_probs=170.1
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC---eeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
...||+|.||+ +| +..++.+. ...|.||..... +..++++.|.. .|++|+|+ |..+ +++
T Consensus 9 ~~~pitchAwn--~d----rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWa-------p~sn---rIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWN--SD----RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWA-------PKSN---RIV 71 (361)
T ss_pred ccCceeeeeec--CC----CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeec-------CCCC---cee
Confidence 45789999999 88 77777777 569999997654 46677776655 69999999 6553 788
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE-
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII- 170 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~- 170 (839)
.++.|+.-+||....+. .+++.-.+..|+...+++.|+| ..+.+|+|+....|.||-++.....
T Consensus 72 tcs~drnayVw~~~~~~------------~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGG------------TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred EccCCCCccccccCCCC------------eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEeccccee
Confidence 88889999999984332 2677777788999999999999 9999999999999999988654332
Q ss_pred --EEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 171 --LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 171 --~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
+.++.+.++.+.++.++ +++.++++|+.|+..+++...-.....++ ..++-++.. .-+..
T Consensus 137 VsKhikkPirStv~sldWh---pnnVLlaaGs~D~k~rVfSayIK~Vdekp----ap~pWgsk~-----------PFG~l 198 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDGKCRVFSAYIKGVDEKP----APTPWGSKM-----------PFGQL 198 (361)
T ss_pred hhhhhCCccccceeeeecc---CCcceecccccCcceeEEEEeeeccccCC----CCCCCccCC-----------cHHHH
Confidence 34567778889999985 77889999999999999987622111111 111111110 02344
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
+..+....+.|..+.|+|+|..|+=.+-|.++.+=|.....
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 44554567899999999999999999999999999987764
No 188
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.4e-16 Score=168.24 Aligned_cols=245 Identities=16% Similarity=0.251 Sum_probs=178.0
Q ss_pred eeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC---C---eeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---G---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~---~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
....|++.+.-+ ...-+|+.|. ||.|.+||... + ..+.+...|++ .|.++.|+ +... .++
T Consensus 66 rF~kL~W~~~g~--~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN-------~~q~---nlL 132 (1049)
T KOG0307|consen 66 RFNKLAWGSYGS--HSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFN-------PFQG---NLL 132 (1049)
T ss_pred cceeeeecccCC--CccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeecc-------ccCC---cee
Confidence 356888873222 0012566666 89999999865 2 35667777776 69999999 5542 466
Q ss_pred EEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE
Q 003208 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (839)
Q Consensus 92 ~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~ 170 (839)
+.++ +|.|.|||+.....+ |.+ + -....+.|.+++|+- .....||+++.+|.+.|||++..+.+
T Consensus 133 ASGa~~geI~iWDlnn~~tP---~~~-----~-----~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETP---FTP-----G-----SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eccCCCCcEEEeccCCcCCC---CCC-----C-----CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCcc
Confidence 6654 799999999864321 111 0 112457899999986 24568999999999999999988877
Q ss_pred EEEecCCc-eeEEEEeeccCCccceEEEEeecC---CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 171 LEVHSPER-CLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 171 ~~~~~~~~-~~~~s~~~~~~~~~~~~l~sg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
..+..+.. +.+..+.+|.. ....|++++.| -.|.+||++ ...
T Consensus 198 i~ls~~~~~~~~S~l~WhP~--~aTql~~As~dd~~PviqlWDlR--------------------------------~as 243 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPD--HATQLLVASGDDSAPVIQLWDLR--------------------------------FAS 243 (1049)
T ss_pred cccccCCCccceeeeeeCCC--CceeeeeecCCCCCceeEeeccc--------------------------------ccC
Confidence 77665544 33445555432 33445555443 468899988 245
Q ss_pred eeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFII 322 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~ 322 (839)
.+++.+.+|...|.++.|++.+ ++++|++.|+.|.+|+.++++. +. .+.....++..+.|. +..++
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-----l~-----~~p~~~nW~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-----LG-----ELPAQGNWCFDVQWCPRNPSVMA 313 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-----ee-----ecCCCCcceeeeeecCCCcchhh
Confidence 6777889999999999999865 8899999999999999999766 22 444456788999998 57899
Q ss_pred EEeCCCeEEEEcC
Q 003208 323 TAGEDCTCRVWGS 335 (839)
Q Consensus 323 s~~~dg~i~vw~~ 335 (839)
.++.||.|.|+.+
T Consensus 314 ~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 314 AASFDGKISIYSL 326 (1049)
T ss_pred hheeccceeeeee
Confidence 9999999999998
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.2e-15 Score=150.79 Aligned_cols=269 Identities=16% Similarity=0.222 Sum_probs=183.8
Q ss_pred ccccCCC--ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC--------CeeeeEEeeecCceEEeEEeccc
Q 003208 8 EWRLDVG--QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--------GTLIRPFQVFHGIRLHGISCNFI 76 (839)
Q Consensus 8 ~w~~~~~--~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~--------~~~~~~~~~~~~~~v~~i~~~~~ 76 (839)
-|.++-. .|..-|++++|. |. ...|++++ ++.|.+|+++. -+++.+|+.|.+ +|.|+++.
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~--~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~-- 353 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFH--PS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVP-- 353 (577)
T ss_pred ecceeeeeecchhhhhhhhcC--CC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEec--
Confidence 3555432 277779999998 77 55666666 99999999942 257889998777 79999998
Q ss_pred ccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC
Q 003208 77 NCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (839)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d 156 (839)
++++ ..+.++-||+|+.|++.....+...+.| ..+...+.||.+.|+.+++++ ....|++++.|
T Consensus 354 -----~n~~---~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-----~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~D 417 (577)
T KOG0642|consen 354 -----SNGE---HCYSGGIDGTIRCWNLPPNQDPDDSYDP-----SVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSD 417 (577)
T ss_pred -----CCce---EEEeeccCceeeeeccCCCCCcccccCc-----chhccceeccccceeeeeecc---cccceeeecCC
Confidence 7763 6667777999999998854444444434 456678899999999999999 88889999999
Q ss_pred CcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 157 NSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 157 ~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
|+++.|+.....+ .++..+. ...-.++.+. +.+....++. .....+++..-+
T Consensus 418 gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~--ss~~a~~~~s---~~~~~~~~~~~e--------------------- 470 (577)
T KOG0642|consen 418 GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT--SSRPAHSLAS---FRFGYTSIDDME--------------------- 470 (577)
T ss_pred ceEEeeccCCcCc-cccCCccccCCcceEeec--cchhHhhhhh---cccccccchhhh---------------------
Confidence 9999999976655 2232221 1111233321 1111111211 222233222000
Q ss_pred eeEeecccccceeeEEEe-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc
Q 003208 236 CFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 308 (839)
....+..+. .-...+.-+.++|.+...+++..|+.|+++|..++... .....|.
T Consensus 471 ---------v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l----------~s~~a~~ 531 (577)
T KOG0642|consen 471 ---------VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL----------HSMVAHK 531 (577)
T ss_pred ---------hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc----------hheeecc
Confidence 111111111 11245677889999999999999999999999987662 3667888
Q ss_pred cceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeeccc
Q 003208 309 ARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (839)
Q Consensus 309 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~ 347 (839)
..++++++. +.+|++++.||.+++|.+ ...++.....|.
T Consensus 532 ~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999998 689999999999999998 444444444443
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=1.2e-13 Score=147.47 Aligned_cols=277 Identities=16% Similarity=0.111 Sum_probs=188.4
Q ss_pred CeeEEEECCCC-eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccce
Q 003208 44 SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122 (839)
Q Consensus 44 ~~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 122 (839)
+.+.||+++.. .+-..+.. ...|.++.|+|.. |+ .++.+..+|.|.+||+....... ..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~----p~-----ll~gG~y~GqV~lWD~~~~~~~~---------~s 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFD----PN-----LLAGGCYNGQVVLWDLRKGSDTP---------PS 281 (555)
T ss_pred ceEEEEecCCCCCceEEEec--CCceeEEEeccCC----cc-----eEEeeccCceEEEEEccCCCCCC---------Cc
Confidence 47999999876 33344443 3369999999442 32 34444568999999998654210 12
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce-EEEE----ec------CCceeEEEEeeccCCc
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEV----HS------PERCLLYSMKLWGDNL 191 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~-~~~~----~~------~~~~~~~s~~~~~~~~ 191 (839)
........|.++|+.+.|.... .+.-+++++.||.|+.|+++.... ...+ .. .....+.++.|. ..
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~-~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~--~~ 358 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNE-HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE--PT 358 (555)
T ss_pred ccccccccCCcCeEEEEEeccC-CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec--cC
Confidence 2333445799999999998732 225688999999999998865332 1100 01 112334566664 34
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
+...++.|+.+|.|.--+....+..+. ...+....+..|.+.|.++.++|=+..+
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------------VSYKGHSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCccccc-------------------------ccccccccccccCcceEeeecCCCccce
Confidence 456789999999998754431111110 0123344566799999999999977655
Q ss_pred EEEeCCCcEEEEEcc-cCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC---CCceEEEee
Q 003208 272 VSVSDDRSARIWEVR-AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIK 344 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~---~~~~~~~~~ 344 (839)
+..+.|-+++||.-. .... + ..+..+...|++++|+ +..|+++..||.+.+||+ ...++.+.+
T Consensus 414 fls~gDW~vriWs~~~~~~P--------l--~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASP--------L--LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eeeeccceeEeccccCCCCc--------c--hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 555559999999987 3222 1 2555667779999999 578999999999999999 344555555
Q ss_pred cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 345 ~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+.. ....+.++++|+.|++|...|.+.+|++..
T Consensus 484 ~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 VCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccc-ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5543 566778899999999999999999999953
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1e-14 Score=132.94 Aligned_cols=296 Identities=15% Similarity=0.129 Sum_probs=181.3
Q ss_pred eEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 302 SVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 302 ~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+.+.+|.+.|+++.|. ..++++|..-|.|.+|++ +.+.+..++.+....|+.+..-|+ ..+.+-+.|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 5778999999999998 788999999999999999 667777777666668999988887 5688999999999999954
Q ss_pred cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec-----CC----eEEEEeccceEEEEEecCC
Q 003208 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-----ED----TLYIATNHGYLYHTKLCDM 450 (839)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~~~~~~~g~i~~~~~~~~ 450 (839)
...- .+-++ .++++.|.+ +. .++..-..|.-. ..+.+.
T Consensus 87 s~~i---------------~i~Si-----------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~ 133 (323)
T KOG0322|consen 87 SAFI---------------SIHSI-----------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDG 133 (323)
T ss_pred cceE---------------EEeee-----------------eccccccccceeccCCCcchhheecCCcccch-hhhhcc
Confidence 1100 00000 011111111 00 111111111000 000010
Q ss_pred CCceeEEEe---eecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEee-----cccee
Q 003208 451 DSVNWNKIL---QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS-----AGIER 522 (839)
Q Consensus 451 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~-----~~~~~ 522 (839)
....-..+. .....+.++|.+.... ....-+++.|.++|.+.+|+++.+... .++...+. ..+..
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~-----c~s~~lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHA-----CGSTFLLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVESPNASHKQ 206 (323)
T ss_pred CccceeEccCchhccccCceeeeecccc-----ccceEEEEEeccCCeEEEEEccCCcee--eccccccccccchhhccC
Confidence 000000110 0112345666553222 123357889999999999999876321 11111111 12233
Q ss_pred EEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCc
Q 003208 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG 602 (839)
Q Consensus 523 ~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg 602 (839)
.+++. .+.+.-..=++|+.+..+..|.++.... . +..+.+.... .-.|..+.+=||+++||+++.|+
T Consensus 207 pvlsl--dyas~~~rGisgga~dkl~~~Sl~~s~g--s--------lq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 207 PVLSL--DYASSCDRGISGGADDKLVMYSLNHSTG--S--------LQIRKEITLK-NPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred cceee--eechhhcCCcCCCccccceeeeeccccC--c--------ccccceEEec-CCCccceEEccCCcEEeecccCC
Confidence 33332 2233223345677777888898875421 1 1111111111 22366777889999999999999
Q ss_pred cEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEE
Q 003208 603 NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (839)
Q Consensus 603 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~ 669 (839)
.|+||+.. .+.|+.+++ -|. ..|++++|+ ++...|+++|.|+.|-+|++
T Consensus 274 RiRVyswr-------------tl~pLAVLk-yHs-agvn~vAfs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWR-------------TLNPLAVLK-YHS-AGVNAVAFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEec-------------cCCchhhhh-hhh-cceeEEEeC---CCCchhhhccCCceEEeeec
Confidence 99999888 566888886 454 789999999 78899999999999999986
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=1.6e-14 Score=139.02 Aligned_cols=124 Identities=25% Similarity=0.445 Sum_probs=106.9
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeC
Q 003208 251 RLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE 326 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~ 326 (839)
.+.||+++|..++|+| +...|||||+|.+|.+|.+..+.... ...+++ ..+.+|..+|--++|+ .+.|+|++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepv--v~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPV--VELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-Ccccce--EEEeecceeEEEEeecccchhhHhhccC
Confidence 3579999999999999 45689999999999999998765521 111222 4889999999999999 489999999
Q ss_pred CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
|.+|.+|++ +|+.+.++. |.. .|+++.|+.+|.+|+|.+.|.+||+||.+.
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 999999999 888888887 887 699999999999999999999999999955
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.6e-15 Score=148.53 Aligned_cols=227 Identities=19% Similarity=0.319 Sum_probs=166.4
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC--------CceEEEEecCCceeEEEEeeccCCccc
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--------SSIILEVHSPERCLLYSMKLWGDNLEA 193 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~--------~~~~~~~~~~~~~~~~s~~~~~~~~~~ 193 (839)
+.+..++..|.+.|+.++|+| ....|++|+.|+++.+|+++. -+++.++..|...+ .++.+ +.++
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~---sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPV-l~v~v---~~n~ 356 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHP---SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPV-LCVVV---PSNG 356 (577)
T ss_pred cceeeeeecchhhhhhhhcCC---CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCce-EEEEe---cCCc
Confidence 445558888999999999999 888999999999999999943 23566777776653 34444 5789
Q ss_pred eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEE
Q 003208 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (839)
Q Consensus 194 ~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 273 (839)
..+++|+.||+|+.|++. ....|. +.-........+.||++.|+.+++++...+|++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p-~n~dp~----------------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLP-PNQDPD----------------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eEEEeeccCceeeeeccC-CCCCcc----------------------cccCcchhccceeccccceeeeeecccccceee
Confidence 999999999999999876 111110 000022345567899999999999999999999
Q ss_pred EeCCCcEEEEEcccCccC--C---------------CC----------------CceeeeceEeec--------cccceE
Q 003208 274 VSDDRSARIWEVRAEYWK--D---------------SD----------------SIEEVGSSVLYG--------HNARVW 312 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~--~---------------~~----------------~~~~~~~~~~~~--------h~~~v~ 312 (839)
|+.||+++.|+....... . .. ..+......+.. -...+.
T Consensus 414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 999999999998765441 0 00 000000000000 001122
Q ss_pred EeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 313 DCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 313 ~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
-+..+ ....+++.+|+.|+++|. .++++.....|.. .++++++.|+|-+|++++.|+.+++|.+..
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccc
Confidence 33333 368889999999999999 8999999988988 699999999999999999999999999844
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.7e-15 Score=148.75 Aligned_cols=268 Identities=16% Similarity=0.202 Sum_probs=206.5
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i 99 (839)
..+.|+ .+ |++++.|. -|.|--+|+.++++..++.+-+ .|.++.|. .+- .++|+...+-+
T Consensus 133 Y~~~yt--rn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L-------Hne----q~~AVAQK~y~ 193 (545)
T KOG1272|consen 133 YHLDYT--RN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL-------HNE----QFFAVAQKKYV 193 (545)
T ss_pred eeeeec--CC----ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh-------cch----HHHHhhhhceE
Confidence 367777 66 77777766 8999999999999999998755 58999987 442 78999999999
Q ss_pred EEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCce
Q 003208 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC 179 (839)
Q Consensus 100 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~ 179 (839)
.|||-. +..++.++.|. .|..+.|.| .--+|++++..|.++.-|+.+|+.+..+....+.
T Consensus 194 yvYD~~----------------GtElHClk~~~-~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~ 253 (545)
T KOG1272|consen 194 YVYDNN----------------GTELHCLKRHI-RVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR 253 (545)
T ss_pred EEecCC----------------CcEEeehhhcC-chhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHccCCc
Confidence 999976 67788888774 589999999 8888999999999999999999988776544332
Q ss_pred eEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCe
Q 003208 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (839)
Q Consensus 180 ~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 259 (839)
+..+. .+|-+..+-.|...|+|.+|++. ...++..+..|.++|
T Consensus 254 -~~vm~---qNP~NaVih~GhsnGtVSlWSP~---------------------------------skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 254 -TDVMK---QNPYNAVIHLGHSNGTVSLWSPN---------------------------------SKEPLVKILCHRGPV 296 (545)
T ss_pred -cchhh---cCCccceEEEcCCCceEEecCCC---------------------------------CcchHHHHHhcCCCc
Confidence 11222 26778889999999999999998 677788888999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC--CC
Q 003208 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DG 337 (839)
Q Consensus 260 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~--~~ 337 (839)
.+|++.++|++++|.+.|+.++|||+++... +. +... .-+...++++..-++.++....+.||.- .+
T Consensus 297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----l~-----t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~ 365 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----LH-----TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKG 365 (545)
T ss_pred ceEEECCCCcEEeecccccceeEeeeccccc-----cc-----eeec-CCCccccccccccceeeecCCeeeeehhhhcC
Confidence 9999999999999999999999999998644 11 2222 3456678888766777777788999964 32
Q ss_pred --ceEEEeeccc-CCceEEEEEccCCCEEEEEeCCCcEEEE
Q 003208 338 --KQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (839)
Q Consensus 338 --~~~~~~~~h~-~~~i~~~~~~~~~~~l~t~~~dg~i~iw 375 (839)
..-..+..|. +.+|..+.|.|-...|-.|-..|.-.+.
T Consensus 366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred CCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 2222222232 2268899999987777776666644443
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.5e-13 Score=148.24 Aligned_cols=299 Identities=15% Similarity=0.184 Sum_probs=199.7
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC--ceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
.+-..+.|+| -...++++...-.|+|||.+.++.+..+.... ...+..+.+. +..+..++++|+.||.|+||+-
T Consensus 1065 ~~pk~~~~hp---f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li-Ne~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1065 QPPKTLKFHP---FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI-NEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCceeeecC---CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee-cccchhheeeeccCceEEEecc
Confidence 3456678888 67788888777789999999999887765332 2334455554 2356678999999999999986
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iw 283 (839)
...... ..+.+... .+..+.=.-+.|..+..+|+++++-+.|+||
T Consensus 1141 y~~~~~----------------------------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIW 1192 (1387)
T KOG1517|consen 1141 YADKWK----------------------------KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIW 1192 (1387)
T ss_pred cccccC----------------------------CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEE
Confidence 511100 11222111 1122222456788877788888888999999
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcCC----CceEEEeecccCC-ceEEEE
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGR-GIWRCL 355 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~----~~~~~~~~~h~~~-~i~~~~ 355 (839)
|...... ..- ...+....|+++.-+ ++.++.|..||.|++||.. ...+...+.|+.. +|..+.
T Consensus 1193 Da~~E~~-----~~d----iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1193 DAHKEQV-----VAD----IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred eccccee-----Eee----cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 9987654 221 223345567776654 6999999999999999982 2356777778762 388889
Q ss_pred EccCCC-EEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEE
Q 003208 356 YDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY 434 (839)
Q Consensus 356 ~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 434 (839)
+.+.|- -|++|+.||.|++||++.....++ +++..+-. -.+..+++...++..++
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~---------------~~iv~~~~---------yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETF---------------LTIVAHWE---------YGSALTALTVHEHAPII 1319 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCccccc---------------ceeeeccc---------cCccceeeeeccCCCee
Confidence 988775 499999999999999976322111 11111000 01237888888888888
Q ss_pred EEeccceEEEEEecCCCCce--eEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 435 IATNHGYLYHTKLCDMDSVN--WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 435 ~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
++++.+.|.+|++....... ....+-+...+++.|+.++|.. -++|+|+.|..|.+|.....
T Consensus 1320 AsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~--------~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1320 ASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR--------LLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchh--------HhhhhccCCceEEEeecCCc
Confidence 88777777777654432211 1122334456677888887764 67899999999999976543
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=5.6e-13 Score=127.93 Aligned_cols=240 Identities=15% Similarity=0.181 Sum_probs=160.7
Q ss_pred ccccccCCCc------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeec--CceEEeEEecccc
Q 003208 6 LSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH--GIRLHGISCNFIN 77 (839)
Q Consensus 6 i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~--~~~v~~i~~~~~~ 77 (839)
+++.+.+.+. +..+|.+|.+. .+ +++++ -...|+|||+++.+++.++.--. ...+.++.++
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~-----RLvV~-Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n--- 138 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMN--RK-----RLVVC-LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN--- 138 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEc--cc-----eEEEE-EcccEEEEecccceeehhhhccCCCccceEeeccC---
Confidence 4555555443 45678899988 32 45544 44459999999999999988542 2235555555
Q ss_pred cccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe
Q 003208 78 CTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (839)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~ 154 (839)
+.+ .+++.=+ .|.|.|||... .+.+..+..|.+.+-+++|+| +|.+|||++
T Consensus 139 ----~~n----~ylAyp~s~t~GdV~l~d~~n---------------l~~v~~I~aH~~~lAalafs~---~G~llATAS 192 (391)
T KOG2110|consen 139 ----NAN----CYLAYPGSTTSGDVVLFDTIN---------------LQPVNTINAHKGPLAALAFSP---DGTLLATAS 192 (391)
T ss_pred ----CCC----ceEEecCCCCCceEEEEEccc---------------ceeeeEEEecCCceeEEEECC---CCCEEEEec
Confidence 443 4555533 58999999975 678888999999999999999 999999999
Q ss_pred CCCc-EEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 155 SDNS-IRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 155 ~d~~-i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
..|+ |||+.+.+++.+.+++... .+.+|++.| ++++.+|++.+..++|.+|.+......+...+....+-.+..+
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F---s~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~s 269 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF---SPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVS 269 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE---CCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhh
Confidence 9887 6999999999999987544 456788888 6889999999999999999998433211111000000000000
Q ss_pred -------CceeeEeecccccceeeEEEecCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 233 -------DFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 233 -------~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
+.+..+.|+. .+.....+.... .+..+.-.+...++..++.||.+..|.+.-.
T Consensus 270 k~~~sylps~V~~~~~~---~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 270 KAATSYLPSQVSSVLDQ---SRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhcchhhhhhhhh---ccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 1111112222 122222222222 3333433357789999999999999998754
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=4.5e-13 Score=147.03 Aligned_cols=365 Identities=17% Similarity=0.169 Sum_probs=206.4
Q ss_pred cceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEE
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l 321 (839)
.+..++.+..|...|..++.++.. .+++|||.||+|++|+.+.-..... ..+.. .+......++.++.+. ++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-s~rS~--ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-SARSE--LTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-eeeee--EEEeccCCceEEEEeccCCCeE
Confidence 577888889999999999988755 9999999999999999976433100 01100 1233345667776665 7889
Q ss_pred EEEeCCCeEEEEcCCC---c-----eEEEeecccCCceEEE-EEcc-CCC-EEEEEeCCCcEEEEecCCcCccCcCCCCc
Q 003208 322 ITAGEDCTCRVWGSDG---K-----QLKMIKEHIGRGIWRC-LYDS-LSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPE 390 (839)
Q Consensus 322 ~s~~~dg~i~vw~~~~---~-----~~~~~~~h~~~~i~~~-~~~~-~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 390 (839)
+.++.||.|++.+++- + .......+....+.+| ++.. .+. .++.+..-+.|..||++....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-------- 1185 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-------- 1185 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh--------
Confidence 9999999999998832 1 1122222222234443 3432 233 788888889999999854211
Q ss_pred ccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEecCCCC-ceeEEEeeecCCCceE
Q 003208 391 AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDS-VNWNKILQVSEGMPII 468 (839)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~~~~~v~ 468 (839)
.+.+.. ....+.|++++.+|.+ -+++|++.|.+..|++.-... ..|.. +...++.
T Consensus 1186 ---------~w~lk~----------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~----P~~~~i~ 1242 (1431)
T KOG1240|consen 1186 ---------AWRLKN----------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH----PARAPIR 1242 (1431)
T ss_pred ---------HHhhhc----------CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC----cccCCcc
Confidence 111111 1123579999999966 577788899998888755422 22432 2234455
Q ss_pred EeeecCCCCCCCCCCCcE-EEEeC-CCccEEEEEEcCCCCCCcceee-----eEeeccc-----eeEEeeEEEeecCCCe
Q 003208 469 CMDLLSNEPKYPCGIDDW-VALGD-GKGNMTIVRVVGDVHTPQLSFT-----FTWSAGI-----ERQLLGTYWCKSLGHR 536 (839)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~-l~~g~-~dg~i~l~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~s~~~~ 536 (839)
-+.+++-. +.... +.++. ..+.|.+|++.++.....+... ..+.... +...-..+.++...+.
T Consensus 1243 ~v~~~~~~-----~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~ 1317 (1431)
T KOG1240|consen 1243 HVWLCPTY-----PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG 1317 (1431)
T ss_pred eEEeeccC-----CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc
Confidence 45555443 22233 34444 5789999999887543221111 1111111 2333344556667789
Q ss_pred EEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEE-EEeccccccc
Q 003208 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV-LFPLLRDLLN 615 (839)
Q Consensus 537 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~-iw~~~~~~~~ 615 (839)
++.+|+.|..|+.||........ . ..+ +-....+..+.+. +.-++.|+.--... ++.......
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ss-~--------~~~-----~~s~~~~~~~~s~-~~~~i~~~~~i~e~i~~~~tv~~t- 1381 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEISS-Y--------AVP-----GPSTSYSTNSESY-DLSTIPGSQFIDEFIIYQQTVGLT- 1381 (1431)
T ss_pred eeeecCCccceeeccCCCccccc-c--------ccc-----Cccccccccchhc-cccccCCCccchhhhhhhhhcCch-
Confidence 99999999999999988764211 0 011 1111122222222 22223333221111 111111000
Q ss_pred CCCccceeecCcceeeec-ccCCCceeEEEEEeccCCceEEEeecCcCcEEEEE
Q 003208 616 DKSVALHVEVSPLNYFKG-AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~-~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~ 668 (839)
+.........+...... .|. +.|+++++.. .+..+|+++++||.|++|.
T Consensus 1382 -~~~~~~~~~~~~~~~ps~~H~-d~Itdma~~~--~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1382 -EALRENQKLRPGPSDPSTYHH-DPITDMATLK--SEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred -hhcccccccccCCCCCccccc-chhhhhhhhc--cCccEEEEecCCCeeeecC
Confidence 00001111222222222 333 7899999885 3467999999999999994
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=2e-15 Score=158.25 Aligned_cols=214 Identities=19% Similarity=0.329 Sum_probs=159.1
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
.+.+..+.+|..+|.|+.|.- .|.++++|+.|..++||..++..++....++...+ ..++. +.+...+++++.
T Consensus 180 mk~ikrLlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~di-tdlav---s~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDI-TDLAV---SSNNTMIAAASN 252 (1113)
T ss_pred HHHHHHHHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCcccc-chhcc---chhhhhhhhccc
Confidence 456678889999999999988 99999999999999999999999999988887542 23332 456778999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
|..|++|.+. .+.++..+.||++.|++|+|+|-. +.+.||+++
T Consensus 253 D~vIrvWrl~---------------------------------~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~ 295 (1113)
T KOG0644|consen 253 DKVIRVWRLP---------------------------------DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCR 295 (1113)
T ss_pred CceEEEEecC---------------------------------CCchHHHHhccccceeeeccCccc----cCCCCCceE
Confidence 9999999998 788888999999999999999954 888999999
Q ss_pred EEEccc-CccCCCCCce-----eee--------ce--------EeeccccceEEeEEC-------------CCEEEEEeC
Q 003208 282 IWEVRA-EYWKDSDSIE-----EVG--------SS--------VLYGHNARVWDCCLT-------------DSFIITAGE 326 (839)
Q Consensus 282 iwd~~~-~~~~~~~~~~-----~~~--------~~--------~~~~h~~~v~~~~~~-------------~~~l~s~~~ 326 (839)
+||.+- .....+.+.+ ... .. ....|. +.+++|. ..+.+++-.
T Consensus 296 ~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e--~~~l~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 296 IWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE--FEQLAWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred eccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch--hhHhhhhccceEEEeccccccccceeeee
Confidence 999881 1110000000 000 00 000111 1111111 134455556
Q ss_pred CCeEEEEcC-CCceEEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEec-CCcCc
Q 003208 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQF-QAFLP 382 (839)
Q Consensus 327 dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~-~~~~~ 382 (839)
+..+++|++ +|...+.+.+|.. .+..+.++|-+ .+..+++.||...|||+ .+..+
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred eeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 677899999 8999999999988 69999999865 56678999999999999 44433
No 199
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=142.45 Aligned_cols=312 Identities=14% Similarity=0.114 Sum_probs=218.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.|-|..|.|. .. +..|++|+ |-.|.+||+.++.....+...|...|.--.|-|+ .+.. .++.++
T Consensus 141 H~GcVntV~FN--~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~-----s~d~---ti~~~s 206 (559)
T KOG1334|consen 141 HKGCVNTVHFN--QR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF-----SGDR---TIVTSS 206 (559)
T ss_pred CCCccceeeec--cc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCC-----CCCc---Cceecc
Confidence 88999999999 66 88999998 7899999999999888888766666776667644 2321 455556
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.||.+++=.+.... ..+-...+..|.++|.-++.-|. ....|.+++.|+.+.-.|+........+.
T Consensus 207 ~dgqvr~s~i~~t~------------~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 207 RDGQVRVSEILETG------------YVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred ccCceeeeeecccc------------ceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCccceee
Confidence 69999998876433 02334566789999999999982 44568899999999999998765543332
Q ss_pred ---cCC--ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 175 ---SPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 175 ---~~~--~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
... +..+++++. .+.+...+++|+.|-.+++||.+.-...+.. +.+. ...+-
T Consensus 273 cr~~~~~~~v~L~~Ia~--~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---------------~~~~------~f~p~ 329 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAV--DPRNTNEFAVGGSDQFARVYDQRRIDKEENN---------------GVLD------KFCPH 329 (559)
T ss_pred eeccCCccceeeeeEec--CCCCccccccCChhhhhhhhcccchhhcccc---------------chhh------hcCCc
Confidence 112 235666665 2344558999999999999998721111100 0000 00111
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCce---eeeceEeecccc--ceEEeEECC---CEE
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE---EVGSSVLYGHNA--RVWDCCLTD---SFI 321 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~h~~--~v~~~~~~~---~~l 321 (839)
+....-.-.|++++|+.++.-|++...|-.|+++.-..+......... .+-+..++||.. .|..+-|-| +++
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyV 409 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYV 409 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceE
Confidence 111122346999999988877777788888999965443321111111 121234678854 477888873 799
Q ss_pred EEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 322 ~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
++|+.-|.|.||+. +++.+.-+.+... -|.||.-+|--.+||+.|-|..|+||...+
T Consensus 410 vSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred EecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99999999999999 7777777777666 699999999889999999999999998743
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=137.27 Aligned_cols=263 Identities=13% Similarity=0.160 Sum_probs=170.5
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeecc----CCccceEEEEeecCCeE
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG----DNLEALRIASGTIYNEI 205 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~l~sg~~dg~i 205 (839)
.|...|.|+.|.. +...+.+++ |..+.+|+-.+......+..+..-.-..+...+ .......++.++.||.+
T Consensus 12 r~~e~vc~v~w~~---~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS---NEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccc---cceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4566677888876 666665555 555555544333222222212111111111111 12234578888899999
Q ss_pred EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 003208 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~ 285 (839)
.+.+-. ++.-....+|.+.|.+-.|+|||.-|+++++||.|++|.-
T Consensus 88 ~il~k~----------------------------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr 133 (737)
T KOG1524|consen 88 VILNKS----------------------------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR 133 (737)
T ss_pred EEeccc----------------------------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec
Confidence 888753 4444556789999999999999999999999999999986
Q ss_pred ccCccCCCCCceeeeceEeeccccceEEeEECC---CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC
Q 003208 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
...-. .++.....+|.|++|.+ +.+++.+. .+.|=.+ ....+-+.+.|.+ -|.++.|++.+.
T Consensus 134 sGMLR-----------Stl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~ 199 (737)
T KOG1524|consen 134 SGMLR-----------STVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSN 199 (737)
T ss_pred cchHH-----------HHHhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccceeEEeccCc-EEEEeecCcccc
Confidence 55322 25556678899999983 45555443 4444444 3445567788998 799999999999
Q ss_pred EEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccce
Q 003208 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 441 (839)
++++||.|-..++||-.+..+.+... |+.+|++++|.|+..+++++.+ .
T Consensus 200 lI~sgGED~kfKvWD~~G~~Lf~S~~------------------------------~ey~ITSva~npd~~~~v~S~n-t 248 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQGANLFTSAA------------------------------EEYAITSVAFNPEKDYLLWSYN-T 248 (737)
T ss_pred ceeecCCceeEEeecccCcccccCCh------------------------------hccceeeeeeccccceeeeeee-e
Confidence 99999999999999997765543332 3356888888888545544421 1
Q ss_pred EEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEE
Q 003208 442 LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (839)
Q Consensus 442 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l 498 (839)
+ + +..+..+++..++.++++ ..++.|...|.+.+
T Consensus 249 ~---R------------~~~p~~GSifnlsWS~DG--------TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 249 A---R------------FSSPRVGSIFNLSWSADG--------TQATCGTSTGQLIV 282 (737)
T ss_pred e---e------------ecCCCccceEEEEEcCCC--------ceeeccccCceEEE
Confidence 1 1 123335566666665554 66677776666544
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.3e-11 Score=118.64 Aligned_cols=232 Identities=13% Similarity=0.183 Sum_probs=163.0
Q ss_pred eeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC--
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-- 96 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~-- 96 (839)
.+..+.|. .| ..+|..|+-.--++|+.+.-....... ..+..|..+-|+ .. .+..++.+
T Consensus 7 ti~~~~~N--qd----~~~lsvGs~~Gyk~~~~~~~~k~~~~~-~~~~~IvEmLFS-------SS-----LvaiV~~~qp 67 (391)
T KOG2110|consen 7 TINFIGFN--QD----STLLSVGSKDGYKIFSCSPFEKCFSKD-TEGVSIVEMLFS-------SS-----LVAIVSIKQP 67 (391)
T ss_pred ceeeeeec--cc----eeEEEccCCCceeEEecCchHHhhccc-CCCeEEEEeecc-------cc-----eeEEEecCCC
Confidence 35566688 77 778888884446888877644422222 234467778887 33 34444433
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
+.+++++.+... --+... ....|.++.++ .++|+++-.+ .|.|||+.+.+.+.++..-
T Consensus 68 r~Lkv~~~Kk~~-------------~ICe~~---fpt~IL~VrmN-----r~RLvV~Lee-~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 68 RKLKVVHFKKKT-------------TICEIF---FPTSILAVRMN-----RKRLVVCLEE-SIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred ceEEEEEcccCc-------------eEEEEe---cCCceEEEEEc-----cceEEEEEcc-cEEEEecccceeehhhhcc
Confidence 568888887532 112222 34679999995 4667777655 4999999999999887633
Q ss_pred --CceeEEEEeeccCCccceEEEE--eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 177 --ERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 177 --~~~~~~s~~~~~~~~~~~~l~s--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
....+.++.. +..+.++|. ....|.|++||.. ..+++..+
T Consensus 126 ~~n~~gl~AlS~---n~~n~ylAyp~s~t~GdV~l~d~~---------------------------------nl~~v~~I 169 (391)
T KOG2110|consen 126 PPNPKGLCALSP---NNANCYLAYPGSTTSGDVVLFDTI---------------------------------NLQPVNTI 169 (391)
T ss_pred CCCccceEeecc---CCCCceEEecCCCCCceEEEEEcc---------------------------------cceeeeEE
Confidence 2222333322 455667776 2346999999998 77888889
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCe
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 329 (839)
..|++.+-+++|+++|.+||++|+.|+ ||++.+.+++. +.+.. .--....|.+++|+ ..+|.+.+..++
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-----l~eFR---RG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-----LYEFR---RGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-----eeeee---CCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 999999999999999999999999997 78999988766 33221 11124578899999 578888899999
Q ss_pred EEEEcC
Q 003208 330 CRVWGS 335 (839)
Q Consensus 330 i~vw~~ 335 (839)
|.+|.+
T Consensus 242 VHiFKL 247 (391)
T KOG2110|consen 242 VHIFKL 247 (391)
T ss_pred EEEEEe
Confidence 999987
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.8e-14 Score=139.45 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=141.0
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
+.+.+.|.||++-|+|++|+. +|.+|++|+.|-.+.|||.-..+.+..+...+...+|++.|.... +..++++|..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgAg 115 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGAG 115 (758)
T ss_pred cchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEeccC
Confidence 456678899999999999999 999999999999999999999999999988888889999997654 4568999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i 280 (839)
|..|+++|+...+...... ......+.+..|...|..|+-.|++ +.+.++++||+|
T Consensus 116 Dk~i~lfdl~~~~~~~~d~-----------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDH-----------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred cceEEEEeccccccccccc-----------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 9999999998322221110 0223444567899999999999988 789999999999
Q ss_pred EEEEcccCccCC--CCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC
Q 003208 281 RIWEVRAEYWKD--SDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 281 ~iwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~ 335 (839)
+-+|++....-. ......+ ......--...|+..+ +.+|+.|+.|-..++||.
T Consensus 173 rQyDiREph~c~p~~~~~~~l--~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSIL--VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeecccCCccCCccccccHHH--HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 999998854310 0000000 0111122345567776 689999999999999995
No 203
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=2.2e-11 Score=132.43 Aligned_cols=153 Identities=19% Similarity=0.248 Sum_probs=117.5
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC----CeEEEEEcC
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSS 266 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~l~~~~ 266 (839)
.+...++.++.++.+.+||.. ..........-+. ...-+-+++
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~---------------------------------~~~~~~~i~~~er~~l~~~~~~g~s~ 143 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSK---------------------------------NSSVLSKIQSDERCTLYSSLIIGDSA 143 (967)
T ss_pred hhcceEEEEEcCceEEEEecc---------------------------------cCceehhcCCCceEEEEeEEEEeccC
Confidence 566788899999999999988 2222222221111 122234566
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEE-E
Q 003208 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK-M 342 (839)
Q Consensus 267 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~-~ 342 (839)
+.-++++|+.-+.|.+|+....... ..+.+|.+.|.++.++ +.++++.++|.++|+|++ +.+... .
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p----------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP----------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT 213 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc----------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc
Confidence 7778999999999999999844331 2588999999999996 899999999999999999 555444 6
Q ss_pred eecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCC
Q 003208 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (839)
Q Consensus 343 ~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 389 (839)
.-+|.. .||.+.+.|+ .++|++.|.+.++|+.+...+..+.+|.
T Consensus 214 ~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~ 257 (967)
T KOG0974|consen 214 GFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHS 257 (967)
T ss_pred cccccc-eeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhh
Confidence 668888 5999999997 8999999999999988777666666554
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=1.8e-12 Score=142.51 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=175.8
Q ss_pred EECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec
Q 003208 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (839)
Q Consensus 49 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (839)
|+. .|.++.++..|.. .|..++.++ +.+. .+++++.||+|++|+...-..... ..+...++
T Consensus 1034 W~p-~G~lVAhL~Ehs~-~v~k~a~s~------~~~s---~FvsgS~DGtVKvW~~~k~~~~~~--------s~rS~lty 1094 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-AVIKLAVSS------EHTS---LFVSGSDDGTVKVWNLRKLEGEGG--------SARSELTY 1094 (1431)
T ss_pred CCc-cceEeehhhhccc-cccceeecC------CCCc---eEEEecCCceEEEeeehhhhcCcc--------eeeeeEEE
Confidence 664 4889999998766 477888873 3321 555666799999999875331111 12333344
Q ss_pred cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC--c-----eEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--S-----IILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~--~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
.--...+.++...+ .++.+|.++.||.|++.++..- . ..+.........+.++..+........|+.++.
T Consensus 1095 s~~~sr~~~vt~~~---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCG---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred eccCCceEEEEecc---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe
Confidence 44557788899888 9999999999999999998651 1 112222233333555544333333357888999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
-+.|..||.+..+ ++|.. ...-..+.|++++.+|.+.++++|...|.+.
T Consensus 1172 ~~~iv~~D~r~~~-----------------------~~w~l--------k~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRH-----------------------DAWRL--------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred ccceEEecchhhh-----------------------hHHhh--------hcCccccceeEEEecCCceEEEEecCCceEE
Confidence 9999999998111 11111 1122358999999999999999999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEEC---C--CEEEEEe--CCCeEEEEcC-CCceEEEeecccCC----
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D--SFIITAG--EDCTCRVWGS-DGKQLKMIKEHIGR---- 349 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~--~~l~s~~--~dg~i~vw~~-~~~~~~~~~~h~~~---- 349 (839)
+||++-+.. +. ....++..++..+..+ + ...++++ ..+.|.+|++ .|.+...+....+.
T Consensus 1221 lWDLRF~~~-----i~----sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1221 LWDLRFRVP-----IL----SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred EEEeecCce-----ee----cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 999987654 11 1333445666666554 3 4555554 4788999999 55444444322100
Q ss_pred --------------ceEEEEEccCCCEEEEEeCCCcEEEEecCCcC
Q 003208 350 --------------GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (839)
Q Consensus 350 --------------~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~ 381 (839)
+.....+...+.++.+|+.|..|+.||....+
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 11122333345689999999999999986543
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.55 E-value=1.4e-12 Score=139.45 Aligned_cols=276 Identities=12% Similarity=0.090 Sum_probs=174.1
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCce--EE----Eeeccc
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQ--LK----MIKEHI 347 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~--~~----~~~~h~ 347 (839)
+.+.+|++..... . .....-...|.++.|+ +++++.|..+|.|.+||+ .+.. .. ....|.
T Consensus 222 ~~~~vW~~~~p~~-----P-----e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT-----P-----ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCCCC-----c-----eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 4789999988633 1 2444557789999998 689999999999999999 3322 21 223456
Q ss_pred CCceEEEEEccCC--CEEEEEeCCCcEEEEecCCcC--ccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceE
Q 003208 348 GRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQAFL--PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (839)
Q Consensus 348 ~~~i~~~~~~~~~--~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 423 (839)
. +++.+.|..+- .-+++++.||.|..|+++.-. ........ . ............++
T Consensus 292 ~-~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~-----------------~--~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 292 E-PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES-----------------K--KHKGQQSSKAVGAT 351 (555)
T ss_pred c-CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc-----------------c--ccccccccccccee
Confidence 5 79999986543 458999999999999885411 11111000 0 00000011123588
Q ss_pred EEEEecC--CeEEEEeccceEEEEEecCCCCce---eEEE-eeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEE
Q 003208 424 CLHLTSE--DTLYIATNHGYLYHTKLCDMDSVN---WNKI-LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (839)
Q Consensus 424 ~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~---~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 497 (839)
+++|.+. ..++++|..|.|+...-....... ++.. ....+.++++++...|-. ..++.+++ |-.++
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-------PKNFLSVG-DWTVR 423 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc-------cceeeeec-cceeE
Confidence 9999874 489999999999875433322111 1111 122346788888776643 23444554 89999
Q ss_pred EEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCC-CeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccc
Q 003208 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLG-HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (839)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (839)
||.-... ..|...+. .....+.+ .++||. ...++++..||.|.+||+......... ..
T Consensus 424 iWs~~~~-~~Pl~~~~-----~~~~~v~~--vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~------------s~- 482 (555)
T KOG1587|consen 424 IWSEDVI-ASPLLSLD-----SSPDYVTD--VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL------------SQ- 482 (555)
T ss_pred eccccCC-CCcchhhh-----hccceeee--eEEcCcCceEEEEEcCCCceehhhhhccccCCcc------------cc-
Confidence 9976521 12322221 12222444 456774 456778899999999999865321100 10
Q ss_pred cccCceEEEEeeecCCCEEEEecCCccEEEEecccc
Q 003208 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 577 ~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
..+....+.+.++++|++|++|+..|++.+|++...
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 112556778889999999999999999999999753
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=1.7e-11 Score=128.87 Aligned_cols=275 Identities=13% Similarity=0.121 Sum_probs=165.7
Q ss_pred eEEEeeCCeeEEEECCC-Ce--eeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCC
Q 003208 37 FLLAGSGSQVLLYDLEA-GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (839)
Q Consensus 37 ~l~~g~~~~v~iwd~~~-~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~ 112 (839)
|++.+.++.|++||+.+ |+ .+.++.. ...++.++++ |+++ .++++ ..++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~s-------pd~~---~lyv~~~~~~~i~~~~~~~~g---- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVIS-------PDKR---HLYVGVRPEFRVLSYRIADDG---- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEEC-------CCCC---EEEEEECCCCcEEEEEECCCC----
Confidence 44445589999999964 43 4444442 2347788999 8874 44444 347899999996311
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCC-Cc---eEEEEecCCceeEEEEeec
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISN-SS---IILEVHSPERCLLYSMKLW 187 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~-~~---~~~~~~~~~~~~~~s~~~~ 187 (839)
.++.+.... ..+....++++| ++++|++++. ++.|.+|++.+ +. .+..+..... ...+.+
T Consensus 69 --------~l~~~~~~~-~~~~p~~i~~~~---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~--~~~~~~- 133 (330)
T PRK11028 69 --------ALTFAAESP-LPGSPTHISTDH---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG--CHSANI- 133 (330)
T ss_pred --------ceEEeeeec-CCCCceEEEECC---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc--ccEeEe-
Confidence 022233222 223456899999 9998887764 88999999964 32 2222222111 223333
Q ss_pred cCCccceEEEE-eecCCeEEEEEeeccc-cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEc
Q 003208 188 GDNLEALRIAS-GTIYNEIIVWKVDWEH-VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (839)
Q Consensus 188 ~~~~~~~~l~s-g~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 265 (839)
+|++.++++ ...++.|.+||+.... ..+ .......... ......+.|+
T Consensus 134 --~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~---------------------------~~~~~~~~~~-g~~p~~~~~~ 183 (330)
T PRK11028 134 --DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA---------------------------QEPAEVTTVE-GAGPRHMVFH 183 (330)
T ss_pred --CCCCCEEEEeeCCCCEEEEEEECCCCcccc---------------------------cCCCceecCC-CCCCceEEEC
Confidence 577877754 5567999999997211 000 0000011111 2345689999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcccCccCCCCCceeeeceEee----ccccceEEeEEC--CCEEEEEe-CCCeEEEEcC--
Q 003208 266 SCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLY----GHNARVWDCCLT--DSFIITAG-EDCTCRVWGS-- 335 (839)
Q Consensus 266 ~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~-- 335 (839)
|++++++++.. +++|.+|+++..... .+.+...... .+......+.++ +++++++. .++.|.+|++
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGE----IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCC----EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 99999988876 899999999743110 2222111110 111223357777 46777775 4789999998
Q ss_pred CCce---EEEeecccCCceEEEEEccCCCEEEEEeC-CCcEEEEecC
Q 003208 336 DGKQ---LKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (839)
Q Consensus 336 ~~~~---~~~~~~h~~~~i~~~~~~~~~~~l~t~~~-dg~i~iw~~~ 378 (839)
++.. +...... .....++++|+|++|+++.. +++|.+|+++
T Consensus 260 ~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 260 DGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3322 2222221 13567899999999988775 8999999884
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=2e-11 Score=128.31 Aligned_cols=262 Identities=16% Similarity=0.189 Sum_probs=161.5
Q ss_pred CCcCccccccCC-Cc--------eeeeeeEEEEecCCCCCCCcceEEEee--CCeeEEEECC-CCee--eeEEeeecCce
Q 003208 2 GKKDLSEWRLDV-GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLE-AGTL--IRPFQVFHGIR 67 (839)
Q Consensus 2 ~d~~i~~w~~~~-~~--------~~~~Vt~l~f~~~~~~~~~~~~l~~g~--~~~v~iwd~~-~~~~--~~~~~~~~~~~ 67 (839)
.|+.|++|++.+ +. ..+....++++ |+ +++|+++. ++.|.+|++. +++. +.... ....
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s--pd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~ 81 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS--PD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGS 81 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEEC--CC----CCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCC
Confidence 588999999963 22 22456789999 99 78877765 6889999986 3432 22222 2224
Q ss_pred EEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
+..|+++ |+++ .++++. +++.|.+|+++..... .+.+..+.+. ....+++++| +
T Consensus 82 p~~i~~~-------~~g~---~l~v~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~-~~~~~~~~~p---~ 136 (330)
T PRK11028 82 PTHISTD-------HQGR---FLFSASYNANCVSVSPLDKDGIP-----------VAPIQIIEGL-EGCHSANIDP---D 136 (330)
T ss_pred ceEEEEC-------CCCC---EEEEEEcCCCeEEEEEECCCCCC-----------CCceeeccCC-CcccEeEeCC---C
Confidence 6789999 8884 444443 4899999999642200 1222333322 3467788999 8
Q ss_pred CcEEEE-EeCCCcEEEEecCCCceEE-----EEecCCceeEEEEeeccCCccceEEEEeec-CCeEEEEEeeccccccCC
Q 003208 147 NRSLAI-GCSDNSIRVWDISNSSIIL-----EVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 147 ~~~las-~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~ 219 (839)
++++++ ...++.|.+||+.+...+. ....+.......+.+ ++++.++++... ++.|.+|++.....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~---~pdg~~lyv~~~~~~~v~v~~~~~~~~---- 209 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF---HPNQQYAYCVNELNSSVDVWQLKDPHG---- 209 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE---CCCCCEEEEEecCCCEEEEEEEeCCCC----
Confidence 888755 4457999999997633221 111111111233444 588888888766 89999999971100
Q ss_pred CCCCCccCCCCCCCceeeEeecccccceeeEEEec------CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccCccCC
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKD 292 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~ 292 (839)
..+.+..+.. +......+.++|++++++++.. ++.|.+|++......
T Consensus 210 -------------------------~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~- 263 (330)
T PRK11028 210 -------------------------EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV- 263 (330)
T ss_pred -------------------------CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-
Confidence 0111222211 1223456889999999988854 789999999654321
Q ss_pred CCCceeeeceEeeccccceEEeEEC--CCEEEEEeC-CCeEEEEcC
Q 003208 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~ 335 (839)
.+.++. ...+ ...+.+.++ +++|+++.. +++|.+|++
T Consensus 264 ---~~~~~~-~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 264 ---LSFEGH-QPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---EEEeEE-Eecc--ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 122211 1111 234567777 677777665 899999977
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.4e-13 Score=133.75 Aligned_cols=314 Identities=15% Similarity=0.140 Sum_probs=206.4
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
+.+...|..|.+-|..+.|+. .|..|++|+.|..|.+||...+.....+...+...++...|..++ +...|++.+.
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-~d~ti~~~s~ 207 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-GDRTIVTSSR 207 (559)
T ss_pred hhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-CCcCceeccc
Confidence 456678899999999999999 999999999999999999999988888776666667777776554 4567899999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i 280 (839)
||++++=.+.... .......+..|.+.|..++..|+. ..|.+++.|+.+
T Consensus 208 dgqvr~s~i~~t~------------------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v 257 (559)
T KOG1334|consen 208 DGQVRVSEILETG------------------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV 257 (559)
T ss_pred cCceeeeeecccc------------------------------ceecceecccccCccceeeecCCCCCcccccccccce
Confidence 9999987765100 112234556799999999999965 569999999999
Q ss_pred EEEEcccCccCCCCCceeeeceEeecccc---ceEEeEEC---CCEEEEEeCCCeEEEEcCC---C----ceEEEeeccc
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLT---DSFIITAGEDCTCRVWGSD---G----KQLKMIKEHI 347 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~---~~~l~s~~~dg~i~vw~~~---~----~~~~~~~~h~ 347 (839)
.-.|++..... ..+ .....+.. ....++.. ...+++++.|..+++||.. . ..+.++..|+
T Consensus 258 ~~~Dlr~~~pa-----~~~--~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h 330 (559)
T KOG1334|consen 258 FHIDLRQDVPA-----EKF--VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH 330 (559)
T ss_pred eeeeeccCCcc-----cee--eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence 99999886541 111 12222222 34566665 4689999999999999972 1 1222332221
Q ss_pred -----CCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcce
Q 003208 348 -----GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (839)
Q Consensus 348 -----~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 422 (839)
.-.|++++|+.++.-|.+.-.|-.|+++.-......+... .+ ..+ ...+.+...-.....|
T Consensus 331 l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~------~s-~~~-------~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 331 LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP------SS-PRE-------QYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC------Cc-chh-------hccchhhccccccccc
Confidence 1259999999777666666667788888542211000000 00 000 0000001111122358
Q ss_pred EEEEEec-CC-eEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 423 RCLHLTS-ED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 423 ~~~~~~~-~~-~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
+.+-|.. .. .++.++.-|.|++|+-...+.. ..+.+... -|.|+.-+| .-.+||+.+-|..|+||-
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii---~~MegDr~-VVNCLEpHP--------~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII---RFMEGDRH-VVNCLEPHP--------HLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchhHHH---HHhhcccc-eEeccCCCC--------CCchhhccCCccceeeec
Confidence 8887765 33 4555567799998765544332 23333332 566665544 347899999999999996
Q ss_pred Ec
Q 003208 501 VV 502 (839)
Q Consensus 501 ~~ 502 (839)
-.
T Consensus 465 P~ 466 (559)
T KOG1334|consen 465 PL 466 (559)
T ss_pred CC
Confidence 63
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.5e-10 Score=109.35 Aligned_cols=293 Identities=14% Similarity=0.176 Sum_probs=177.2
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeec-CceEEeEEecccccccCCCccceeeEEEEEcC--
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFGE-- 96 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~-- 96 (839)
...++|. .| ..-.+++.+.-.+||+++--++..+.+... +..+..|-|. .+ .+..++|.
T Consensus 8 ~lsvs~N--QD----~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR-------~N-----~laLVGGg~~ 69 (346)
T KOG2111|consen 8 TLSVSFN--QD----HSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR-------SN-----YLALVGGGSR 69 (346)
T ss_pred eeEEEEc--cC----CceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh-------hc-----eEEEecCCCC
Confidence 4569999 77 678888888778999986533322222211 2234445554 22 44444442
Q ss_pred -----cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC-CCceE
Q 003208 97 -----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSII 170 (839)
Q Consensus 97 -----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~-~~~~~ 170 (839)
..|.|||-.. ..++.++. ...+|.++.+.+ +.|++. ..+.|.||... +.+.+
T Consensus 70 pky~pNkviIWDD~k---------------~~~i~el~-f~~~I~~V~l~r-----~riVvv-l~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLK---------------ERCIIELS-FNSEIKAVKLRR-----DRIVVV-LENKIYVYTFPDNPKLL 127 (346)
T ss_pred CCCCCceEEEEeccc---------------CcEEEEEE-eccceeeEEEcC-----CeEEEE-ecCeEEEEEcCCChhhe
Confidence 4799999332 33444443 557899999965 456554 47899999997 56666
Q ss_pred EEEec---CCceeEEEEeeccCCccceEEEE-eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 171 LEVHS---PERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 171 ~~~~~---~~~~~~~s~~~~~~~~~~~~l~s-g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
+.+.. |.+ +.++.- ..+..+||. |-.-|.|+|-|+... ..
T Consensus 128 ~~~et~~NPkG--lC~~~~---~~~k~~LafPg~k~GqvQi~dL~~~-------------------------------~~ 171 (346)
T KOG2111|consen 128 HVIETRSNPKG--LCSLCP---TSNKSLLAFPGFKTGQVQIVDLAST-------------------------------KP 171 (346)
T ss_pred eeeecccCCCc--eEeecC---CCCceEEEcCCCccceEEEEEhhhc-------------------------------Cc
Confidence 66542 332 222221 223344544 666799999998711 11
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEe
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~ 325 (839)
.....+.+|...|.|++.+.+|..+||+|..|+ |||||..++.. ++++. .|-
T Consensus 172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-----l~E~R----RG~------------------ 224 (346)
T KOG2111|consen 172 NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-----LQELR----RGV------------------ 224 (346)
T ss_pred CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-----eeeee----cCC------------------
Confidence 123567899999999999999999999999997 78999888765 22111 000
Q ss_pred CCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccc---------cCC
Q 003208 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE---------FNG 396 (839)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~~~ 396 (839)
... .|.+|+|+|+..+|++++..|++.+|.++......-+. .+.. ++.
T Consensus 225 --------------------d~A-~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~--SSl~~~~~~lpky~~S 281 (346)
T KOG2111|consen 225 --------------------DRA-DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDES--SSLSFKRLVLPKYFSS 281 (346)
T ss_pred --------------------chh-eEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccc--ccccccccccchhccc
Confidence 111 47778888888888888877888888774422111100 0000 000
Q ss_pred CcceEEeecCCCccceeeccCCCcceEEEEEecC-CeEEEEeccceEEEEEecCC
Q 003208 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIATNHGYLYHTKLCDM 450 (839)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~g~i~~~~~~~~ 450 (839)
.-.+..+..| .+....++|..+ +.+++...||..+.+.+...
T Consensus 282 ~wS~~~f~l~------------~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 282 EWSFAKFQLP------------QGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred ceeEEEEEcc------------CCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 0111112222 234566677776 67777788888877666544
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.9e-10 Score=119.36 Aligned_cols=495 Identities=15% Similarity=0.172 Sum_probs=280.4
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
.....+++.|+ .+. .+++++| ||.++|..+.+.......-.-...-.+..-+++.||...|.-+.|+.
T Consensus 13 nnvkL~c~~WN-------ke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 13 NNVKLHCAEWN-------KES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCceEEEEEEc-------ccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 34468899998 443 6777766 89999999986542211100001112445578999999999999998
Q ss_pred ccCCCcEEEEEeCCCcEEEEecCCCceEEE-EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCC
Q 003208 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (839)
Q Consensus 143 ~~~~~~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~ 221 (839)
+.+.|-|...+|.|.||-+-++.-... +....++++.++.+ ..+|..|+....||.|.+=.++.+
T Consensus 82 ---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW---n~dG~kIcIvYeDGavIVGsvdGN-------- 147 (1189)
T KOG2041|consen 82 ---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW---NLDGTKICIVYEDGAVIVGSVDGN-------- 147 (1189)
T ss_pred ---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE---cCCCcEEEEEEccCCEEEEeeccc--------
Confidence 888898888999999999987754332 34555677888887 688999999999999999888722
Q ss_pred CCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC--CCCC-cee
Q 003208 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDS-IEE 298 (839)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~-~~~ 298 (839)
++|.. .++| .....+.|++|.+.++.+-..|.+.++|....-.. ..++ +..
T Consensus 148 ----------------RIwgK--------eLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 148 ----------------RIWGK--------ELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred ----------------eecch--------hcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 12221 1111 12236889999998888888999999998754220 0000 111
Q ss_pred eeceEeeccccceEEeEEC-C---------CEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEEEEEccCCCEEEEE
Q 003208 299 VGSSVLYGHNARVWDCCLT-D---------SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (839)
Q Consensus 299 ~~~~~~~~h~~~v~~~~~~-~---------~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~ 366 (839)
.+ .+......|-.+.|. + ..++.+..+|.+.+..- +..++..-.+ - .+..+.|+++|..|+.+
T Consensus 202 tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m-~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 202 TG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M-KIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred ee--eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c-EeecceecCCCcEEEEc
Confidence 11 112222235556654 1 57899999999988776 2223222222 2 37788999999999999
Q ss_pred eCCC---------cEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe
Q 003208 367 GFDS---------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (839)
Q Consensus 367 ~~dg---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 437 (839)
|.|. .|.++..-+. .++.+......|+.++|-..|..++..
T Consensus 277 G~~~da~~~~d~n~v~Fysp~G~------------------------------i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYSPYGH------------------------------IVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cCcccccCccccceEEEeccchh------------------------------heEEEecCCceeeeeEEcCCceEEEEE
Confidence 9763 2333333221 122222333568999998888888888
Q ss_pred ccceEEEEEecCCCCceeEEE-------eeecCCCceEE---eeecCCCCCC----------CCCCCcEEEEeCCCccEE
Q 003208 438 NHGYLYHTKLCDMDSVNWNKI-------LQVSEGMPIIC---MDLLSNEPKY----------PCGIDDWVALGDGKGNMT 497 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~-------~~~~~~~~v~~---~~~~~~~~~~----------~~~~~~~l~~g~~dg~i~ 497 (839)
.++.|++.++...- +|-.+ ++. ++.+.++ ++...+...+ ...+--.++.-..+|.+.
T Consensus 327 vdsfiyfanIRP~y--kWgy~e~TvVy~y~~-~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~ 403 (1189)
T KOG2041|consen 327 VDSFIYFANIRPEY--KWGYIEETVVYVYQK-EELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIP 403 (1189)
T ss_pred ecceEEEEeecccc--eEEEeeeEEEEEEcc-CCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCc
Confidence 88888887775532 23221 122 2223333 2222221000 001112333333445444
Q ss_pred EEEEcCCCCCCcceeeeEeec--cceeEEeeEEEee-cCCCeEEEEeCCCCcEEEeeecCCCCcccccC-----------
Q 003208 498 IVRVVGDVHTPQLSFTFTWSA--GIERQLLGTYWCK-SLGHRFIFTADPKGRLKLWQLCDPFSSVCYES----------- 563 (839)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----------- 563 (839)
-++.-.. ......+....+. ..+.+...+.-+| ..++.+++.++.+ .+.+|.....+....+..
T Consensus 404 e~s~le~-~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 404 EYSTLEN-RSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred chhhhhc-ccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccC
Confidence 3311000 0011111111111 1111122222222 2366778878775 577787755433221111
Q ss_pred --Ccc--c--eeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccC-
Q 003208 564 --SKT--N--NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG- 636 (839)
Q Consensus 564 --~~~--~--~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 636 (839)
..+ . .+.-...-..+...+|.+++.| .++|.+|-..|.|+-|.+++..+ .+.|.
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----------------~n~y~~ 542 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----------------TNSYPV 542 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----------------eecccc
Confidence 000 0 0110001113567789888888 78999999999999999886311 01111
Q ss_pred CCceeEEEEEeccCCceEEEeecCcCcEEEEEEec
Q 003208 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (839)
Q Consensus 637 ~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~ 671 (839)
+-.|.++... -++..++.-.--|.+.+.+++.
T Consensus 543 n~~~y~~~lN---CnstRlAiId~~gv~tf~dLd~ 574 (1189)
T KOG2041|consen 543 NPSIYSIKLN---CNSTRLAIIDLVGVVTFQDLDY 574 (1189)
T ss_pred CchheeEeec---cCcchhhhhhhhceeeeeeccc
Confidence 1235666555 4445555555556666666553
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.48 E-value=5.6e-12 Score=118.74 Aligned_cols=205 Identities=13% Similarity=0.157 Sum_probs=157.9
Q ss_pred CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc---eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEE
Q 003208 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (839)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~v 207 (839)
-..+|+|.+|++ +...+|.+-....|.||.....+ ..+++..|.. .+..+++ ++..+.|++++.|..-++
T Consensus 9 ~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdW---ap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDW---APKSNRIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEee---cCCCCceeEccCCCCccc
Confidence 347899999999 99999999999999999987655 4455555543 2444555 688899999999999999
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
|.... ..+-++...+..|+...+++.|+|.++.|++||..+.|.+|-++.
T Consensus 82 w~~~~------------------------------~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 82 WTQPS------------------------------GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred cccCC------------------------------CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 99830 013455666777999999999999999999999999999999876
Q ss_pred CccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC--C-----------------CceEEEeecc
Q 003208 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--D-----------------GKQLKMIKEH 346 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--~-----------------~~~~~~~~~h 346 (839)
..- =.+.......+.+.|.++.|+ +-++++|+.|+.+||+.. . |+.+.++...
T Consensus 132 ENd------WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 132 END------WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred ccc------eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 543 011112445567889999999 357788999999999875 1 1233344333
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+ .+..+.|+|+|..|+-.+.|..+.+-|..+
T Consensus 206 gg-wvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 206 GG-WVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred CC-ceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 44 589999999999999999999999998854
No 212
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.44 E-value=2.1e-11 Score=114.99 Aligned_cols=301 Identities=16% Similarity=0.169 Sum_probs=188.2
Q ss_pred EEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEE
Q 003208 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVK 100 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~ 100 (839)
-.+|| |+ ++|+++..+..+.|=|..+-++++.+...+ .|.-|.|. .|.- ..+++ +.++.|.
T Consensus 13 ~c~fS--p~----g~yiAs~~~yrlviRd~~tlq~~qlf~cld--ki~yieW~-------ads~---~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 13 FCSFS--PC----GNYIASLSRYRLVIRDSETLQLHQLFLCLD--KIVYIEWK-------ADSC---HILCVAYKDPKVQ 74 (447)
T ss_pred ceeEC--CC----CCeeeeeeeeEEEEeccchhhHHHHHHHHH--Hhhheeee-------ccce---eeeeeeeccceEE
Confidence 45789 99 999999998899999998877766665543 47888888 5641 33443 4588999
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCce
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERC 179 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~ 179 (839)
+|++.... --..+..-...+..++|+| +|+ +|.+..-|-.|.||.+.+......-......
T Consensus 75 vwsl~Qpe---------------w~ckIdeg~agls~~~WSP---dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~ 136 (447)
T KOG4497|consen 75 VWSLVQPE---------------WYCKIDEGQAGLSSISWSP---DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV 136 (447)
T ss_pred EEEeecce---------------eEEEeccCCCcceeeeECC---CcceEeeeecceeEEEEEEeccceeEEecccccCc
Confidence 99998532 3345556667899999999 885 5556666889999999876654332222221
Q ss_pred eEEEEeeccCCccceEEEEeecCCe---EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC
Q 003208 180 LLYSMKLWGDNLEALRIASGTIYNE---IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (839)
Q Consensus 180 ~~~s~~~~~~~~~~~~l~sg~~dg~---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (839)
-...| .+++.+.+..+.... +.+.... .-..+..+.-.+
T Consensus 137 --kg~~f---~~dg~f~ai~sRrDCkdyv~i~~c~---------------------------------~W~ll~~f~~dT 178 (447)
T KOG4497|consen 137 --KGYAF---HPDGQFCAILSRRDCKDYVQISSCK---------------------------------AWILLKEFKLDT 178 (447)
T ss_pred --eeEEE---CCCCceeeeeecccHHHHHHHHhhH---------------------------------HHHHHHhcCCCc
Confidence 22333 578888777664311 1111111 122333344445
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEc
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 334 (839)
-..+++.|+|||..|+ +||---... .......-.+..++|+ +.+++.|+.|+.+||.+
T Consensus 179 ~DltgieWsPdg~~la---------Vwd~~Leyk-----------v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLA---------VWDNVLEYK-----------VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ccccCceECCCCcEEE---------Eecchhhhe-----------eeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 5667888888887655 455322111 0122223456677777 47888888888887744
Q ss_pred C-C----Cc--------------------------------------------------------eEEEee------ccc
Q 003208 335 S-D----GK--------------------------------------------------------QLKMIK------EHI 347 (839)
Q Consensus 335 ~-~----~~--------------------------------------------------------~~~~~~------~h~ 347 (839)
- + ++ .+..++ ...
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 2 1 00 011111 111
Q ss_pred CCceEEEEEccCCCEEEEEeCC--CcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEE
Q 003208 348 GRGIWRCLYDSLSSLLVTAGFD--SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (839)
Q Consensus 348 ~~~i~~~~~~~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 425 (839)
. ++--++|++|..+++|-... +.+-+||++...+...-. ..++|+..
T Consensus 319 ~-g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi------------------------------Qk~piraf 367 (447)
T KOG4497|consen 319 C-GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI------------------------------QKHPIRAF 367 (447)
T ss_pred c-ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh------------------------------hccceeEE
Confidence 1 46678999999998887653 678899997643322111 12469999
Q ss_pred EEecCC-eEEEEeccceEEEEEe
Q 003208 426 HLTSED-TLYIATNHGYLYHTKL 447 (839)
Q Consensus 426 ~~~~~~-~~~~~~~~g~i~~~~~ 447 (839)
.+.|.. ++++.+....+|.|..
T Consensus 368 ~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcC
Confidence 999865 6777777777887654
No 213
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-09 Score=114.68 Aligned_cols=486 Identities=12% Similarity=0.083 Sum_probs=249.9
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEeccccccc---CCCccceeeEEEEEc-
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE---GSVSTRVTFEVALFG- 95 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~---~~~~~~~~~~l~~~~- 95 (839)
-.++.++ |. -+++-|+...|.+-|..+-+.+..+..|.. .|+.+.|.|.+... +|.. ++.+++++.
T Consensus 18 ~~A~Dw~--~~-----GLiAygshslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~--~~lliAsaD~ 87 (1062)
T KOG1912|consen 18 RNAADWS--PS-----GLIAYGSHSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS--SQLLIASADI 87 (1062)
T ss_pred ccccccC--cc-----ceEEEecCceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccc--cceeEEeccc
Confidence 4567777 54 588889999999999999999999997775 69999999774221 1111 124444444
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC-cEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|.|.+||.... ..+..+..|.++|.+++|.|.-.+. ..|+.-....++.+||..+|+...+..
T Consensus 88 ~GrIil~d~~~~---------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 88 SGRIILVDFVLA---------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cCcEEEEEehhh---------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 599999999863 3445677889999999998853233 566666667899999999999887765
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc----ceeeE
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT----AVNLF 250 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 250 (839)
.... ++.++.+-. -+...++.-+..|.+.+-+.-..+... .....+++-..-.. .....
T Consensus 153 ys~~-iLs~f~~DP--fd~rh~~~l~s~g~vl~~~~l~~sep~--------------~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 153 YSHE-ILSCFRVDP--FDSRHFCVLGSKGFVLSCKDLGLSEPD--------------VPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred cCCc-ceeeeeeCC--CCcceEEEEccCceEEEEeccCCCCCC--------------CCceeEEEecCccchhhhhhhhh
Confidence 3332 233444432 234445555556777766654111000 01111111110000 00000
Q ss_pred EEecCCCC---------eEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC----
Q 003208 251 RLVGHEGS---------IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---- 317 (839)
Q Consensus 251 ~~~~h~~~---------V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---- 317 (839)
.-..++.. ...++|+|.-+.++-....+.+.++|++-... +..+ .+. .+.+.-+.+-
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~-----l~vv---pie--r~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC-----LAVV---PIE--RGGAKFVDVLPDPR 285 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce-----eEEE---Eec--cCCcceeEeccCCC
Confidence 00011111 12356788766666666678899999987554 2211 121 2222233333
Q ss_pred CCEEEEEeCCCeEEEEcC-C----------------CceEEEeecccCCceEEEEEccC-CCEEEEEeCCCcEEEEecCC
Q 003208 318 DSFIITAGEDCTCRVWGS-D----------------GKQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~-~----------------~~~~~~~~~h~~~~i~~~~~~~~-~~~l~t~~~dg~i~iw~~~~ 379 (839)
...++..-.||.+.+|-. . +.....+.....-.+...+..|. ...++.--.+|.+.+|.++.
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 368899999999999975 2 11111111111111223333444 23444444677888998864
Q ss_pred cCccCcCCC--C-cccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeE
Q 003208 380 FLPGSLESH--P-EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456 (839)
Q Consensus 380 ~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 456 (839)
..+...... . ....|+.....+.+ ..-.-+.++.|| +-..|....
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v----------------~k~~l~~LS~dg----~h~sGs~~~------------ 413 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLV----------------GKTSLISLSDDG----SHSSGSTCV------------ 413 (1062)
T ss_pred CCcCcccccccccccccccccCceeeh----------------hhccccchhhcC----CCCCCceee------------
Confidence 221110000 0 00000000000000 000001111121 001111110
Q ss_pred EEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCccee------eeEeeccceeEEeeEEEe
Q 003208 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF------TFTWSAGIERQLLGTYWC 530 (839)
Q Consensus 457 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 530 (839)
++...+ +.......+.. .....-..++|+|...|+|.++|+.++..-..... .+.|.. ... +..
T Consensus 414 ~~~p~p---~~t~~~~~p~~-n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~ss----lvS 483 (1062)
T KOG1912|consen 414 RMRPMP---ELTKVENDPGG-NTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSS----LVS 483 (1062)
T ss_pred ecccCc---ccceeecCCCC-CccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--cee----EEE
Confidence 000000 00000011110 00001126899999999999999987654322211 111210 011 112
Q ss_pred ecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecc
Q 003208 531 KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 531 ~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~ 610 (839)
++.....=++|+.-+.+.+-|+.++.. +.+ + ........+|+.+..|..++||+..-++.-+-+||+.
T Consensus 484 fsys~~n~~sg~vrN~l~vtdLrtGls-k~f--------R---~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 484 FSYSHVNSASGGVRNDLVVTDLRTGLS-KRF--------R---GLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred eeeccccccccceeeeEEEEEcccccc-ccc--------c---cCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 222222223444455677778877642 111 0 0011347789999999999999999999999999996
Q ss_pred c
Q 003208 611 R 611 (839)
Q Consensus 611 ~ 611 (839)
.
T Consensus 552 t 552 (1062)
T KOG1912|consen 552 T 552 (1062)
T ss_pred c
Confidence 3
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=1.5e-10 Score=109.38 Aligned_cols=236 Identities=13% Similarity=0.159 Sum_probs=156.7
Q ss_pred cCccccccCCCc------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECC-CCeeeeEEeeec-CceEEeEEecc
Q 003208 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFH-GIRLHGISCNF 75 (839)
Q Consensus 4 ~~i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~-~~~~~~~~~~~~-~~~v~~i~~~~ 75 (839)
+.+.|||=.... +..+|.+|.+. ++ .+++--.+.|.||... +.++++.+.-.. .....+++-.
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r~------riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~- 145 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--RD------RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT- 145 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--CC------eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCC-
Confidence 467899943332 66889999998 54 6777778899999987 455665555321 1123333332
Q ss_pred cccccCCCccceeeEEEEEc--CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE
Q 003208 76 INCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (839)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~ 153 (839)
.+. .+|+.=| -|.|+|-|+.... ...-..+..|...|.|++++- +|.++||+
T Consensus 146 ------~~k----~~LafPg~k~GqvQi~dL~~~~-------------~~~p~~I~AH~s~Iacv~Ln~---~Gt~vATa 199 (346)
T KOG2111|consen 146 ------SNK----SLLAFPGFKTGQVQIVDLASTK-------------PNAPSIINAHDSDIACVALNL---QGTLVATA 199 (346)
T ss_pred ------CCc----eEEEcCCCccceEEEEEhhhcC-------------cCCceEEEcccCceeEEEEcC---CccEEEEe
Confidence 221 5555544 5899999997533 112356779999999999999 99999999
Q ss_pred eCCCc-EEEEecCCCceEEEEe-cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCC
Q 003208 154 CSDNS-IRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (839)
Q Consensus 154 ~~d~~-i~vwd~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 231 (839)
|..|+ |||||..+++.+..++ +.....+|+++| +++..+||+++..|+|.|+.++......... ++
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF---Sp~~s~LavsSdKgTlHiF~l~~~~~~~~~~---------SS 267 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF---SPNSSWLAVSSDKGTLHIFSLRDTENTEDES---------SS 267 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe---CCCccEEEEEcCCCeEEEEEeecCCCCcccc---------cc
Confidence 99887 7999999999999987 455778899988 8999999999999999999998322111100 00
Q ss_pred CCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 003208 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (839)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~ 286 (839)
.......+-.--.+...+..+.--.+...-++|-.+.+.++..+.||+.+-+-+.
T Consensus 268 l~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 268 LSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred ccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 0000000000000111223333335677778888776777788888887655443
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.8e-12 Score=125.62 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=137.4
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i 99 (839)
-++||+ ++ +..+++|. ||.+|||++.+...+.....++. .|.++.|+ |||+ .++.++++ ..
T Consensus 148 k~vaf~--~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS-------~dgk---~lasig~d-~~ 209 (398)
T KOG0771|consen 148 KVVAFN--GD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFS-------PDGK---FLASIGAD-SA 209 (398)
T ss_pred eEEEEc--CC----CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeC-------CCCc---EEEEecCC-ce
Confidence 689999 88 78888877 99999999888887777777776 59999999 9984 45555667 99
Q ss_pred EEEEeeccCCCCCCCCCccccceeeeEec--cCCCcceEEEEEeeccCCC---cE-EE-EEeCCCcEEEEecCCCce---
Q 003208 100 KLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGN---RS-LA-IGCSDNSIRVWDISNSSI--- 169 (839)
Q Consensus 100 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~~~~~~~~~~~---~~-la-s~~~d~~i~vwd~~~~~~--- 169 (839)
+||+..++. .++.. ..-...+..+.|+. ++ .+ || .....+.|+.|++.....
T Consensus 210 ~VW~~~~g~---------------~~a~~t~~~k~~~~~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~ 271 (398)
T KOG0771|consen 210 RVWSVNTGA---------------ALARKTPFSKDEMFSSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNF 271 (398)
T ss_pred EEEEeccCc---------------hhhhcCCcccchhhhhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccc
Confidence 999998753 11111 12223455677776 43 22 22 233345677766642211
Q ss_pred EEEEe-cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 170 ILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 170 ~~~~~-~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
++..+ ......+.+++. +++|++++.|+.||.|-|++.. +.+.
T Consensus 272 l~~~~~~~~~~siSsl~V---S~dGkf~AlGT~dGsVai~~~~---------------------------------~lq~ 315 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAV---SDDGKFLALGTMDGSVAIYDAK---------------------------------SLQR 315 (398)
T ss_pred cchhhhhhccCcceeEEE---cCCCcEEEEeccCCcEEEEEec---------------------------------eeee
Confidence 11101 001112445555 7899999999999999999988 5554
Q ss_pred eEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 249 LFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 249 ~~~~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
++.. +.|...|+.|.|+|+.+++++.+.|....+..+.-
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 4443 58999999999999999999999999999988765
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=2.4e-11 Score=115.46 Aligned_cols=271 Identities=16% Similarity=0.201 Sum_probs=171.4
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-----eeeEEeeec-----------CceEEeEEeccccccc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINCTE 80 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-----~~~~~~~~~-----------~~~v~~i~~~~~~~~~ 80 (839)
.-|.||.|. .. |.+|++|. ||.|.+|.-.... ....++.|+ ..+|..|.|.
T Consensus 26 diis~vef~--~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~------ 93 (433)
T KOG1354|consen 26 DIISAVEFD--HY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL------ 93 (433)
T ss_pred cceeeEEee--cc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec------
Confidence 347899999 66 89999999 8999999743221 222333322 2467888887
Q ss_pred CCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCC------Cc--------------cccceeeeEec-cCCCcceEEEE
Q 003208 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ------PE--------------TCVNLSLVQSL-PRLSHWVFDVC 139 (839)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~------~~--------------~~~~~~~~~~~-~~h~~~I~~~~ 139 (839)
++++ ...+++...|++|++|.+.........+. |. ..+...+.+.+ .+|+--|+++.
T Consensus 94 -~~~n-~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 94 -DDGN-LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred -CCCC-ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 3332 23677777899999999986543221111 00 01111222333 46888999999
Q ss_pred EeeccCCCcEEEEEeCCCcEEEEecCCCce---EEEEecCC----ceeEEEEeeccCCccceEEEEeecCCeEEEEEeec
Q 003208 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (839)
Q Consensus 140 ~~~~~~~~~~las~~~d~~i~vwd~~~~~~---~~~~~~~~----~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~ 212 (839)
++. +...++++. |=.|-+|+++--.. +..++.+. .-++.+..|+ +...+.++-.+..|+|++.|++.
T Consensus 172 ~Ns---D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFh--p~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 172 VNS---DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFH--PHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred ecC---ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccC--HhHccEEEEecCCCcEEEeechh
Confidence 998 888888764 77899999864322 22222222 2344556664 23456777888899999999982
Q ss_pred cccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCC
Q 003208 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
..+++...++...+..+....-+.+-..+|..+.|+++|+++++-+. -+|++||+......
T Consensus 246 -----------------~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p- 306 (433)
T KOG1354|consen 246 -----------------SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP- 306 (433)
T ss_pred -----------------hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc-
Confidence 22233333333333233333334455678999999999999988654 68999999665431
Q ss_pred CCCceeeeceEeeccc------------cce---EEeEECC--CEEEEEeCCCeEEEEcC
Q 003208 293 SDSIEEVGSSVLYGHN------------ARV---WDCCLTD--SFIITAGEDCTCRVWGS 335 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~------------~~v---~~~~~~~--~~l~s~~~dg~i~vw~~ 335 (839)
+. +..-|. ..| ..++|+| ..++||+....+++++.
T Consensus 307 ---v~-----t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 307 ---VE-----TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ---ce-----EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 22 222221 122 3467775 59999999999999997
No 217
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=4.2e-11 Score=114.00 Aligned_cols=242 Identities=17% Similarity=0.226 Sum_probs=170.1
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEE-CCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYD-LEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
...|++...- |. ...++-+..|.++|||- .+.++.-..+......++.++.+. ++.. .+++.-.
T Consensus 24 ~d~vn~~~l~--~~---e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-------~e~~---~L~vg~~ 88 (404)
T KOG1409|consen 24 QDDVNAAILI--PK---EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-------SESR---RLYVGQD 88 (404)
T ss_pred hhhhhhheec--cC---CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-------ccce---EEEEEEe
Confidence 3445555444 43 23455556689999995 345666556665555678889888 5541 4444455
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe-
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH- 174 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~- 174 (839)
.+++.-+.+...-. +....+.+..|...|..+.|+- ....+++.+.|..+.---.+.+..+....
T Consensus 89 ngtvtefs~sedfn-----------km~~~r~~~~h~~~v~~~if~~---~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 89 NGTVTEFALSEDFN-----------KMTFLKDYLAHQARVSAIVFSL---THEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred cceEEEEEhhhhhh-----------hcchhhhhhhhhcceeeEEecC---CceeEEEeccccceEEEeeccCCcccceEe
Confidence 78998888764220 1445566778999999999987 77889999988766544445554443221
Q ss_pred -cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 175 -SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 175 -~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
....+..+. -.+...|...|.|.+-.+. +....++..+.
T Consensus 155 ~~~~t~~~~d---------~~~~fvGd~~gqvt~lr~~-------------------------------~~~~~~i~~~~ 194 (404)
T KOG1409|consen 155 ETPASALQFD---------ALYAFVGDHSGQITMLKLE-------------------------------QNGCQLITTFN 194 (404)
T ss_pred eccCCCCcee---------eEEEEecccccceEEEEEe-------------------------------ecCCceEEEEc
Confidence 111111111 1256667777888887776 11456788899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 331 (839)
+|.+.+.+++|.|....|++|..|..+.+||+..... .. ..+.+|...|..+.+. -..++++++||.|.
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TA----YELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----ee----eeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 9999999999999999999999999999999977544 12 4788999999988876 57899999999999
Q ss_pred EEcCC
Q 003208 332 VWGSD 336 (839)
Q Consensus 332 vw~~~ 336 (839)
+|+.+
T Consensus 266 ~w~mn 270 (404)
T KOG1409|consen 266 VWNMN 270 (404)
T ss_pred EEecc
Confidence 99973
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.8e-11 Score=117.31 Aligned_cols=268 Identities=13% Similarity=0.140 Sum_probs=184.0
Q ss_pred eeeeEEEEecCCCCCCCcceEEEe-eCCeeEEEECCCCeeeeEEe-----eecCceEEeEEecccccccCCCccceeeEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQ-----VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g-~~~~v~iwd~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
..|+.++|. .+ .....+... .+..+..+..........+. .....+|.++... |+ .++
T Consensus 56 ~ris~l~~~--~d--~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--------dg----~Li 119 (412)
T KOG3881|consen 56 DRISSLLFG--VD--GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--------DG----TLI 119 (412)
T ss_pred hhhhhheee--cC--CceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--------CC----EEE
Confidence 457788887 44 224455555 36667777766655444431 1123356666664 44 788
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC--CcEEEEecCCCce
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSI 169 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d--~~i~vwd~~~~~~ 169 (839)
++-++|.+.+|....+... -.....+..+ ..+..+.-+| .....+|+|+.. +.+.+||++..+.
T Consensus 120 tc~~sG~l~~~~~k~~d~h-----------ss~l~~la~g-~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLH-----------SSKLIKLATG-PGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred EEecCCcEEEEeccCCccc-----------cccceeeecC-CceeeeccCC--CCCceEecCchhcccceeeeeccccee
Confidence 8889999999998753311 0112222223 3355555555 244567789998 8899999998877
Q ss_pred EEEEecCC--------ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 170 ILEVHSPE--------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 170 ~~~~~~~~--------~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
+.+.+... ......+.|...++ ...+|+++.-+.+++||.+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~------------------------------ 234 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTR------------------------------ 234 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCc------------------------------
Confidence 76654221 12233455543322 6789999999999999988
Q ss_pred ccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--C
Q 003208 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (839)
Q Consensus 242 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~ 319 (839)
...+++..+.--+.+|.++...|+++++++|..-+.+..+|++.+... + ..+.+..+.|.++..++ .
T Consensus 235 --~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--------g-~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 235 --HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--------G-CGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred --ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--------c-cccCCccCCcceEEEcCCCc
Confidence 146678888888999999999999999999999999999999987551 1 25778889999999985 5
Q ss_pred EEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccC
Q 003208 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~ 359 (839)
+++++|.|..+||+|+ +.+++....... .++++.+.++
T Consensus 304 ~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~ 342 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDD 342 (412)
T ss_pred eEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCC
Confidence 9999999999999999 445554443322 2566666443
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.2e-10 Score=109.83 Aligned_cols=208 Identities=15% Similarity=0.193 Sum_probs=131.4
Q ss_pred eeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
.+..++++ +. --.+++++.|..|+|||-++ +....++......|.+++|. |.+. ..++++-.+-
T Consensus 100 dlr~~aWh--qH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawR-------Plsa---selavgCr~g 163 (445)
T KOG2139|consen 100 DLRGVAWH--QH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWR-------PLSA---SELAVGCRAG 163 (445)
T ss_pred ceeeEeec--hh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEec-------cCCc---ceeeeeecce
Confidence 35677787 43 12455556699999999776 44444553333359999999 6654 5667766778
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCCceEEEEecCC
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
|.||..+.........+-.... -..+....+| .+|++|.|++ ++..+++++. |..|.|||..++..+.......
T Consensus 164 IciW~~s~tln~~r~~~~~s~~-~~qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTH-HLQVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred eEEEEcCccccccccccccccc-chhheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 9999987543111100000000 1123344567 7899999999 9999998875 6789999999887765542111
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
.. +.-+.+ +|++.++++++.|+..++|+... ......-.- -.+
T Consensus 239 gg-~slLkw---SPdgd~lfaAt~davfrlw~e~q--------------------------------~wt~erw~l-gsg 281 (445)
T KOG2139|consen 239 GG-FSLLKW---SPDGDVLFAATCDAVFRLWQENQ--------------------------------SWTKERWIL-GSG 281 (445)
T ss_pred Cc-eeeEEE---cCCCCEEEEecccceeeeehhcc--------------------------------cceecceec-cCC
Confidence 11 112233 79999999999999999997550 111111111 235
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 003208 258 SIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s~d~~i~iwd~ 285 (839)
.|....|+|+|++|+-... +.-++|.+
T Consensus 282 rvqtacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred ceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence 8999999999987654433 23344444
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6.1e-12 Score=123.31 Aligned_cols=194 Identities=18% Similarity=0.154 Sum_probs=136.6
Q ss_pred CCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEE
Q 003208 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (839)
Q Consensus 82 ~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~ 160 (839)
.+| ..+++++ ||.+|||++.. ...+.....|...|.++.|+| |++.|++-+.| ..+
T Consensus 154 ~~g----s~latgg~dg~lRv~~~Ps---------------~~t~l~e~~~~~eV~DL~FS~---dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 154 GDG----SKLATGGTDGTLRVWEWPS---------------MLTILEEIAHHAEVKDLDFSP---DGKFLASIGAD-SAR 210 (398)
T ss_pred CCC----CEeeeccccceEEEEecCc---------------chhhhhhHhhcCccccceeCC---CCcEEEEecCC-ceE
Confidence 676 6777765 99999999764 445556678889999999999 99999999999 899
Q ss_pred EEecCCCceEEEEecCCceeEEE-EeeccCC-ccceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceee
Q 003208 161 VWDISNSSIILEVHSPERCLLYS-MKLWGDN-LEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (839)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~s-~~~~~~~-~~~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (839)
||+..++..+...........++ +.|...+ .+..++++- ..-+.|+.|++.
T Consensus 211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~-------------------------- 264 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS-------------------------- 264 (398)
T ss_pred EEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee--------------------------
Confidence 99999997777665444433333 3332111 112234432 334677777766
Q ss_pred EeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
+|+.....+ ......-...|.+++.+++|++++.|+.||.|-|++..+.+. ++ +....|...|+.+.|+
T Consensus 265 -~w~~~~~l~-~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-----~~----~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 265 -LWSGSNFLR-LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-----LQ----YVKEAHLGFVTGLTFS 333 (398)
T ss_pred -eeccccccc-hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-----eE----eehhhheeeeeeEEEc
Confidence 232210111 111122335899999999999999999999999999987544 22 4667899999999999
Q ss_pred C--CEEEEEeCCCeEEEEcC
Q 003208 318 D--SFIITAGEDCTCRVWGS 335 (839)
Q Consensus 318 ~--~~l~s~~~dg~i~vw~~ 335 (839)
| +++++.+.|....|..+
T Consensus 334 Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcCcccccccCCceeEEEE
Confidence 5 67777777777776655
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=4.4e-11 Score=120.36 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=153.0
Q ss_pred cceEEEeeCCeeEEEECCCCe----eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~ 110 (839)
+..|+-..+..+.+|+...+. .+.+.. +.+....+=+|... ...|++ ..+++..+-|.+.+.|......
T Consensus 135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~-y~gt~P~cHdfn~~--~a~~~g---~dllIGf~tGqvq~idp~~~~~- 207 (636)
T KOG2394|consen 135 GDRLCFNVGRELYVYSYRGAADLSKPIDKRE-YKGTSPTCHDFNSF--TATPKG---LDLLIGFTTGQVQLIDPINFEV- 207 (636)
T ss_pred CCEEEEecCCeEEEEEccCcchhccchhhhc-ccCCCCceeccccc--ccCCCC---cceEEeeccCceEEecchhhHH-
Confidence 566666667788999877432 222211 22222344444311 122444 2577777888898888764210
Q ss_pred CCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCC
Q 003208 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN 190 (839)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~ 190 (839)
...| . ....--...|+|+.|.|. +...++.+-.+|.+.++|.+- ........+.+ -
T Consensus 208 sklf-------n---e~r~i~ktsvT~ikWvpg--~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~-----~ 263 (636)
T KOG2394|consen 208 SKLF-------N---EERLINKSSVTCIKWVPG--SDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQA-----L 263 (636)
T ss_pred HHhh-------h---hcccccccceEEEEEEeC--CCceEEEEEecCceEEeeccc-------cccCCCCcccc-----c
Confidence 0000 0 000112367999999992 334555666789999998721 11111111111 1
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
+++..++.. .|.-. ....++....--++.|...+|+|||++
T Consensus 264 k~~~~f~i~-------t~ksk--------------------------------~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 264 KDGDQFAIL-------TSKSK--------------------------------KTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred CCCCeeEEe-------eeecc--------------------------------ccCCccceeEeccccccceeEcCCCce
Confidence 233333322 12111 123455555555679999999999999
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeeccc
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~ 347 (839)
||+.|.||.+||+|+.+.+. .. .+...-+...|++|+ +++|++|++|-.|.||.+ +.+.+..-.+|.
T Consensus 305 LA~VSqDGfLRvF~fdt~eL-----lg-----~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk 374 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFDTQEL-----LG-----VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK 374 (636)
T ss_pred EEEEecCceEEEeeccHHHH-----HH-----HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc
Confidence 99999999999999998665 22 344455678999999 699999999999999999 888899999999
Q ss_pred CCceEEEEEc
Q 003208 348 GRGIWRCLYD 357 (839)
Q Consensus 348 ~~~i~~~~~~ 357 (839)
.. |..++|+
T Consensus 375 SW-Vs~VaFD 383 (636)
T KOG2394|consen 375 SW-VSVVAFD 383 (636)
T ss_pred cc-eeeEeec
Confidence 84 9999998
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.5e-11 Score=130.33 Aligned_cols=207 Identities=12% Similarity=0.082 Sum_probs=137.9
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC---CcEEEEecCCCceE--E
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSII--L 171 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d---~~i~vwd~~~~~~~--~ 171 (839)
..|.+||.+. ...+.+..|...+.+.+|+| +++.||.++.+ ..|.+||+.+++.. .
T Consensus 184 ~~i~i~d~dg----------------~~~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~ 244 (429)
T PRK01742 184 YEVRVADYDG----------------FNQFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVA 244 (429)
T ss_pred EEEEEECCCC----------------CCceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEe
Confidence 6888888763 22345667888899999999 99999887654 46999999887542 2
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
....+.. ...+ +|++..|+.+ +.+|.+.||.+.. ......
T Consensus 245 ~~~g~~~----~~~w---SPDG~~La~~~~~~g~~~Iy~~d~--------------------------------~~~~~~ 285 (429)
T PRK01742 245 SFRGHNG----APAF---SPDGSRLAFASSKDGVLNIYVMGA--------------------------------NGGTPS 285 (429)
T ss_pred cCCCccC----ceeE---CCCCCEEEEEEecCCcEEEEEEEC--------------------------------CCCCeE
Confidence 2222222 2333 6899888775 4688777775540 112234
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d 327 (839)
.+..+...+....|+|||+.|+.++ .++...+|+++..... . ....+.. ....|+ ++.++..+.+
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~------~~l~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----A------SLVGGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----e------EEecCCC--CCccCCCCCCEEEEEcCC
Confidence 4566777788999999999877655 5788899987653321 1 1113332 345677 5778777766
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+ +.+||+ +++... +.... ...++.|+|+|++|+.++.++.+.+|.+
T Consensus 354 ~-i~~~Dl~~g~~~~-lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 354 N-VVKQDLTSGSTEV-LSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred C-EEEEECCCCCeEE-ecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 5 555898 554432 32221 2356789999999999999998888775
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.36 E-value=5e-10 Score=105.95 Aligned_cols=334 Identities=11% Similarity=0.111 Sum_probs=184.4
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec--CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
++|+| +|+++|+++.- .+.|=|.++.+..+.+.. ...-+.+++ .....|+....++.|.+|++.
T Consensus 14 c~fSp---~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~a------ds~~ilC~~yk~~~vqvwsl~---- 79 (447)
T KOG4497|consen 14 CSFSP---CGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKA------DSCHILCVAYKDPKVQVWSLV---- 79 (447)
T ss_pred eeECC---CCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeec------cceeeeeeeeccceEEEEEee----
Confidence 67899 99999999854 777777777654332211 111122321 223456667889999999998
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcccCccCCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSD 294 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~ 294 (839)
...-...+......+.+++|+|+|+.| .+..-|-.|.+|.+.+....
T Consensus 80 -----------------------------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--- 127 (447)
T KOG4497|consen 80 -----------------------------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--- 127 (447)
T ss_pred -----------------------------cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE---
Confidence 455555666777889999999999665 55667889999999886651
Q ss_pred CceeeeceEeeccccceEEeEEC--CCEEEEEe------------------------------------CCCeEEEEcCC
Q 003208 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAG------------------------------------EDCTCRVWGSD 336 (839)
Q Consensus 295 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~------------------------------------~dg~i~vw~~~ 336 (839)
.+.-....+..++|+ +++.+.++ .++.+.|||.-
T Consensus 128 --------~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~ 199 (447)
T KOG4497|consen 128 --------LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV 199 (447)
T ss_pred --------EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch
Confidence 111112233445555 23222222 12345556541
Q ss_pred CceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec-----CCcCcc--CcCCCC--------c--------ccc
Q 003208 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-----QAFLPG--SLESHP--------E--------AKE 393 (839)
Q Consensus 337 ~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~-----~~~~~~--~~~~~~--------~--------~~~ 393 (839)
-+ -+.+..+.+-++..+.|+|.+++|+.|+.|+.+|+.+- =++.+. .+.... . ...
T Consensus 200 Le-ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 200 LE-YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred hh-heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 11 01123344336899999999999999999999988543 111110 000000 0 000
Q ss_pred cCCC---------c-ceEEee-----cCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEE
Q 003208 394 FNGR---------T-EIFSIK-----IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (839)
Q Consensus 394 ~~~~---------~-~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 458 (839)
|.+. . .++.+. .+....... .....-.+.-++|++|..++++-++..-...-+|+.+..+...+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD-~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD-FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCC-CCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhh
Confidence 1000 0 001100 000000000 00112347789999999888887776544334455444331111
Q ss_pred eeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEE
Q 003208 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (839)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 538 (839)
.....++......|.. ..+++......+++|....... ...+...-.+.. .++..+|.++
T Consensus 358 --LiQk~piraf~WdP~~--------prL~vctg~srLY~W~psg~~~--------V~vP~~GF~i~~--l~W~~~g~~i 417 (447)
T KOG4497|consen 358 --LIQKHPIRAFEWDPGR--------PRLVVCTGKSRLYFWAPSGPRV--------VGVPKKGFNIQK--LQWLQPGEFI 417 (447)
T ss_pred --hhhccceeEEEeCCCC--------ceEEEEcCCceEEEEcCCCceE--------EecCCCCceeee--EEecCCCcEE
Confidence 1124467777666653 4555555566788887654211 111122233334 4567788888
Q ss_pred EEeCCCCcE
Q 003208 539 FTADPKGRL 547 (839)
Q Consensus 539 ~s~~~dg~i 547 (839)
+..+.|...
T Consensus 418 ~l~~kDafc 426 (447)
T KOG4497|consen 418 VLCGKDAFC 426 (447)
T ss_pred EEEcCCceE
Confidence 888887643
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=3.1e-12 Score=126.21 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=151.5
Q ss_pred EEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 136 ~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
..+.+.. +|..|+.|+..|.|-.+|..+++....+..-+. +..+.|. .+..++| ......++|||-.
T Consensus 133 Y~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et--v~Dv~~L---Hneq~~A-VAQK~y~yvYD~~---- 199 (545)
T KOG1272|consen 133 YHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET--VRDVTFL---HNEQFFA-VAQKKYVYVYDNN---- 199 (545)
T ss_pred eeeeecC---CccEEEecCCccceeeeecccceeeeeeehhhh--hhhhhhh---cchHHHH-hhhhceEEEecCC----
Confidence 4577777 999999999999999999999998888765443 3444442 2233444 4467889999865
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 295 (839)
+..++.++.| ..|..+.|-|-.-.|++++..|.++.-|+..++.
T Consensus 200 ------------------------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----- 243 (545)
T KOG1272|consen 200 ------------------------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----- 243 (545)
T ss_pred ------------------------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh-----
Confidence 5667777755 6789999999988899999999999999999876
Q ss_pred ceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcE
Q 003208 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (839)
Q Consensus 296 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i 372 (839)
+. .+..-.+++..++-+ +..+-+|..+|+|.+|.. ..+++.++..|.+ +|.++++.++|.+++|.|.|..+
T Consensus 244 Va-----~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 244 VA-----SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred hH-----HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccce
Confidence 22 333344555556555 467889999999999999 7788889999999 79999999999999999999999
Q ss_pred EEEecCC
Q 003208 373 KVHQFQA 379 (839)
Q Consensus 373 ~iw~~~~ 379 (839)
+|||++.
T Consensus 318 kIWDlR~ 324 (545)
T KOG1272|consen 318 KIWDLRN 324 (545)
T ss_pred eEeeecc
Confidence 9999965
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4.5e-10 Score=114.12 Aligned_cols=279 Identities=14% Similarity=0.146 Sum_probs=178.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
+...-|.|..+ || |+|+++.. -+.|+|||+..-. ..|.-|-...|..+.+. .|.- ...+..
T Consensus 50 ~p~ast~ik~s--~D----GqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiL-------sDD~--SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVS--PD----GQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEIL-------SDDY--SKSVFL 112 (703)
T ss_pred CccccceeEec--CC----CcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEe-------ccch--hhheEe
Confidence 44567899999 99 67766644 6999999987533 33443332233333332 2211 133333
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
-.|++|-+-...- .-..++ -...-.+++++. ++.+++ .++....|.=+|++.|..+..+
T Consensus 113 ~~DR~IefHak~G-----------------~hy~~R-IP~~GRDm~y~~--~scDly-~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 113 QNDRTIEFHAKYG-----------------RHYRTR-IPKFGRDMKYHK--PSCDLY-LVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred ecCceeeehhhcC-----------------eeeeee-cCcCCccccccC--CCccEE-EeecCcceEEEEcccccccccc
Confidence 4556655443210 000000 112234566665 144444 4444567888899999887766
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
..... .++++.. ++...+|++|+.+|.|..||.+........ .......
T Consensus 172 ~~~~~-~lN~v~i---n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l---------------------------~~~~~v~ 220 (703)
T KOG2321|consen 172 ETDSG-ELNVVSI---NEEHGLLACGTEDGVVEFWDPRDKSRVGTL---------------------------DAASSVN 220 (703)
T ss_pred ccccc-cceeeee---cCccceEEecccCceEEEecchhhhhheee---------------------------ecccccC
Confidence 54432 2344443 566779999999999999999832221110 0001112
Q ss_pred cCCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc--ccceEEeEEC----CCEEE
Q 003208 254 GHEG-----SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT----DSFII 322 (839)
Q Consensus 254 ~h~~-----~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~----~~~l~ 322 (839)
.|.+ .|+++.|+.+|-.+++|..+|.+.|||++..+. .....| ..+|..+.|. .+.++
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----------l~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----------LLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----------eeecccCCccceeeecccccCCCceEE
Confidence 2333 499999999999999999999999999999766 234444 4567788885 24555
Q ss_pred EEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 323 s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
|.. ...++|||- +|+....+..... +..+++-|++.+++++-.++.+..|=+
T Consensus 290 S~D-k~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 290 SMD-KRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ecc-hHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEc
Confidence 554 568999999 8888877765543 888999999999999999988877765
No 226
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.6e-10 Score=125.17 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=148.8
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCcccc
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCV 120 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~ 120 (839)
..|.|||..... ...+..+. ..+...+|+ |||+ .++.++. +..|++||+..+.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~-~~v~~p~wS-------PDG~---~la~~s~~~~~~~i~i~dl~tg~------------ 239 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSS-QPLMSPAWS-------PDGS---KLAYVSFENKKSQLVVHDLRSGA------------ 239 (429)
T ss_pred EEEEEECCCCCC-ceEeccCC-CccccceEc-------CCCC---EEEEEEecCCCcEEEEEeCCCCc------------
Confidence 589999976444 44454433 368999999 9984 3433332 2479999987543
Q ss_pred ceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe-CCCcEEEE--ecCCCceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVW--DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
.+.+..+.+|. ..++|+| +++.|+.++ .++.+.|| |+.++.. ..+..+. ....+..+ ++++..|+
T Consensus 240 -~~~l~~~~g~~---~~~~wSP---DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~-~~~~~~~w---SpDG~~i~ 307 (429)
T PRK01742 240 -RKVVASFRGHN---GAPAFSP---DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGA-GNNTEPSW---SPDGQSIL 307 (429)
T ss_pred -eEEEecCCCcc---CceeECC---CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCC-CCcCCEEE---CCCCCEEE
Confidence 33445555554 3689999 999888764 67776655 6655543 3333222 12333444 68888766
Q ss_pred Ee-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 003208 198 SG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 198 sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 276 (839)
.. ..+|...||++.. .......+ ++.. ....|+|+|++|+..+.
T Consensus 308 f~s~~~g~~~I~~~~~--------------------------------~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 308 FTSDRSGSPQVYRMSA--------------------------------SGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCceEEEEEC--------------------------------CCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 54 4678899998761 11111122 3433 45789999999988887
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC---CCceEEEeecccCCce
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRGI 351 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~---~~~~~~~~~~h~~~~i 351 (839)
++ +.+||+.++.. + .+... .....+.|+ +.+|+.++.++...+|++ +|+.+..+..|.+ .+
T Consensus 353 ~~-i~~~Dl~~g~~------~-----~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g-~~ 418 (429)
T PRK01742 353 DN-VVKQDLTSGST------E-----VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG-QV 418 (429)
T ss_pred CC-EEEEECCCCCe------E-----EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC-CC
Confidence 65 55699887654 1 11111 122456677 678999988998887765 6888888888877 58
Q ss_pred EEEEEccC
Q 003208 352 WRCLYDSL 359 (839)
Q Consensus 352 ~~~~~~~~ 359 (839)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 88889874
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.31 E-value=3.1e-11 Score=121.42 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=81.6
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
.+.|+..+|+| |+.+||+.+.||.+||+|..+.+.+..++..... +.++++ +||+++|++|+.|-.|.||.+.
T Consensus 290 ~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcW---SPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 290 EGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCW---SPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEE---cCCccEEEecCCcceEEEEEec
Confidence 45899999999 9999999999999999999888777666544333 334554 6999999999999999999998
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 266 (839)
..+.++.-+||+.+|..|+|.|
T Consensus 363 ---------------------------------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ---------------------------------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---------------------------------cceEEEeccccccceeeEeecc
Confidence 7888999999999999999983
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.6e-10 Score=112.17 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=142.2
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe----eeeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
.++|-.++.. | +.+++|-++|.+++|..+.+. .+..+..+. .+..+.-+ +... .+++
T Consensus 105 ~~~I~gl~~~---d----g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~--g~~~~r~~-------~~~p---~Iva 165 (412)
T KOG3881|consen 105 TKSIKGLKLA---D----GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP--GLYDVRQT-------DTDP---YIVA 165 (412)
T ss_pred cccccchhhc---C----CEEEEEecCCcEEEEeccCCccccccceeeecCC--ceeeeccC-------CCCC---ceEe
Confidence 3556666654 2 567777668999999988543 334444332 35555544 3321 4555
Q ss_pred EEc-C--cEEEEEEeeccCC-CCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 93 LFG-E--KRVKLFELNFELS-PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 93 ~~~-~--~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.+| . ..+.|||+..... ......|.+.+.+ .-.-|++++.|.+.+ ....+|+++.-+.+++||...++
T Consensus 166 ~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L-------rVPvW~tdi~Fl~g~-~~~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 166 TGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL-------RVPVWITDIRFLEGS-PNYKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred cCchhcccceeeeecccceeeeeccCCCCccccc-------eeeeeeccceecCCC-CCceEEEEecceeEEEecCcccC
Confidence 555 4 6799999985320 0000001111000 123588999999811 16789999999999999998654
Q ss_pred -eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 169 -IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 169 -~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
++.++...+.. +.++.. .|+++.|++|..-|.+..||.+ .++
T Consensus 238 RPV~~fd~~E~~-is~~~l---~p~gn~Iy~gn~~g~l~~FD~r---------------------------------~~k 280 (412)
T KOG3881|consen 238 RPVAQFDFLENP-ISSTGL---TPSGNFIYTGNTKGQLAKFDLR---------------------------------GGK 280 (412)
T ss_pred cceeEeccccCc-ceeeee---cCCCcEEEEecccchhheeccc---------------------------------Cce
Confidence 45554433322 333333 5889999999999999999998 555
Q ss_pred eeEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 248 NLFR-LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 248 ~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
.... +++-.+.|.+|..+|.++++++|+-|+.|||+|+.+...
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 4444 889999999999999999999999999999999998554
No 229
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2e-09 Score=113.22 Aligned_cols=541 Identities=14% Similarity=0.113 Sum_probs=271.6
Q ss_pred eeeeeeEEEEecCCC-----CCC---CcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccc
Q 003208 16 YLGEISALCFVHLPS-----HLS---SLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~-----~~~---~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
|...|+.+.+. |. .++ ...+|+++. .|.|.+||...+..+..++.+.. ++..++|-+.. ++..
T Consensus 54 h~s~V~~VrWa--p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-~~qdl~W~~~r----d~Sr- 125 (1062)
T KOG1912|consen 54 HQSAVTSVRWA--PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSND-SVQDLCWVPAR----DDSR- 125 (1062)
T ss_pred CccceeEEEec--cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCc-chhheeeeecc----Ccch-
Confidence 77889999998 52 222 233555555 69999999999888888886544 79999997542 3331
Q ss_pred eeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 87 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
+.+++..+...+.+|+..++. ..-.+..-.....|+.+.|.+ ...+..-+..|.+.+-+.-.
T Consensus 126 -d~LlaIh~ss~lvLwntdtG~---------------k~Wk~~ys~~iLs~f~~DPfd--~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 126 -DVLLAIHGSSTLVLWNTDTGE---------------KFWKYDYSHEILSCFRVDPFD--SRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred -heeEEecCCcEEEEEEccCCc---------------eeeccccCCcceeeeeeCCCC--cceEEEEccCceEEEEeccC
Confidence 367888899999999988743 333333333455668888853 33333333456665555421
Q ss_pred Cc------eEEEEecCCc-----------------------eeEEEEeeccCCccceEEEEeecCCeEEEEEeecccccc
Q 003208 167 SS------IILEVHSPER-----------------------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (839)
Q Consensus 167 ~~------~~~~~~~~~~-----------------------~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~ 217 (839)
.. ....+..+.. -+.|++.| .++|.-.-++-......+.++|++
T Consensus 188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f-af~p~~rn~lfi~~prellv~dle------ 260 (1062)
T KOG1912|consen 188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF-AFSPHWRNILFITFPRELLVFDLE------ 260 (1062)
T ss_pred CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh-hcChhhhceEEEEeccceEEEcch------
Confidence 10 1111111100 01121111 123433334444566788888887
Q ss_pred CCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcccCccCCCCC
Q 003208 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~ 295 (839)
-..++....--.+.+.-+.+-|++ ..|++.-.||.+.+|--+.........
T Consensus 261 ---------------------------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~ 313 (1062)
T KOG1912|consen 261 ---------------------------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP 313 (1062)
T ss_pred ---------------------------hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc
Confidence 445555554445666667777765 469999999999999765422210000
Q ss_pred ceeeeceEeeccccceEEeEE-------------C-CCEEEEEeCCCeEEEEcC-CCceE--------------------
Q 003208 296 IEEVGSSVLYGHNARVWDCCL-------------T-DSFIITAGEDCTCRVWGS-DGKQL-------------------- 340 (839)
Q Consensus 296 ~~~~~~~~~~~h~~~v~~~~~-------------~-~~~l~s~~~dg~i~vw~~-~~~~~-------------------- 340 (839)
...+ .......+.+++- + ++.++.--.+|.+.+|.+ +|+.-
T Consensus 314 ~~~l----~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 314 NASL----SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST 389 (1062)
T ss_pred chhh----ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence 0000 0000111111111 1 233333334566666666 32200
Q ss_pred ---E-----E---eecccCCceEEEEE-----------ccCC-------CEEEEEeCCCcEEEEecCCcC-ccCcCCCCc
Q 003208 341 ---K-----M---IKEHIGRGIWRCLY-----------DSLS-------SLLVTAGFDSAIKVHQFQAFL-PGSLESHPE 390 (839)
Q Consensus 341 ---~-----~---~~~h~~~~i~~~~~-----------~~~~-------~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~ 390 (839)
. . -..|.. +..+... .|.+ .+++.|...|+|.++|+.... .+.+.
T Consensus 390 ~~v~k~~l~~LS~dg~h~s-Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs---- 464 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGSHSS-GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS---- 464 (1062)
T ss_pred eehhhccccchhhcCCCCC-CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc----
Confidence 0 0 001221 2222221 2222 267888999999999985432 22222
Q ss_pred ccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEec-------cce---EEEEEecCCCCceeEEEee
Q 003208 391 AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-------HGY---LYHTKLCDMDSVNWNKILQ 460 (839)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~g~---i~~~~~~~~~~~~~~~~~~ 460 (839)
.|...|+++.|.....++..+. .|. +...++.......++ -.+
T Consensus 465 --------------------------vht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR-~l~ 517 (1062)
T KOG1912|consen 465 --------------------------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFR-GLQ 517 (1062)
T ss_pred --------------------------ccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccc-cCC
Confidence 2334578888877665554321 122 222334443333332 234
Q ss_pred ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcce------eeeEeeccceeEEeeEEE--eec
Q 003208 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS------FTFTWSAGIERQLLGTYW--CKS 532 (839)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~s 532 (839)
..+..++..+.++..+ +++++.-.+.-+.+|++.+-.+..... ....|.......+..... ..+
T Consensus 518 ~~despI~~irvS~~~--------~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~s 589 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSSG--------RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSS 589 (1062)
T ss_pred CCCcCcceeeeecccC--------ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhh
Confidence 5667888888887665 899999999999999996644322211 122333111111100000 001
Q ss_pred CCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccc
Q 003208 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 533 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
...+..++.+.|. +++.+......... .++.......| .-.+..|+|- +..|+.|+.+|++.+||+...
T Consensus 590 ms~n~vv~ds~es--~~~~~~~~a~~~sd---gsq~~~a~esf----afal~~mAwk--~d~lv~GD~~GNl~~WDlg~R 658 (1062)
T KOG1912|consen 590 MSENLVVLDSVES--RIYHITLSALVVSD---GSQVNTAWESF----AFALCAMAWK--DDILVVGDVEGNLVVWDLGRR 658 (1062)
T ss_pred hhhceeeeccccc--hheehhhhhhhhcc---ccchhhHHHHH----HHHHHhhhcc--CCeeEeecccCceeEEecccc
Confidence 1223333333222 22222211111111 00000000011 1123346665 779999999999999998753
Q ss_pred cccC---CC-ccceeecCcceeeecccCCCceeEEEEEecc---CCceEEEeecCcCcEEEEEEecCCc
Q 003208 613 LLND---KS-VALHVEVSPLNYFKGAHGISTVSTLSVAKLR---SNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 613 ~~~~---~~-~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~---~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
..-. .+ +..+... ....+|.|. .-|-...|.+.- .+...+--+|+|++.++-|++-++.
T Consensus 659 ~SRg~~d~p~~ra~~l~--~~~ipG~~~-~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~ 724 (1062)
T KOG1912|consen 659 QSRGVRDSPDPRAHSLT--FPQIPGDHT-TLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEK 724 (1062)
T ss_pred cccCccCCCCchhhhee--cccCCCCce-EEEEecCcceecccccceeeeeeccCCcceEEEEEEeccc
Confidence 2111 00 0000000 011222221 334444444321 2222233359999999999987754
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.28 E-value=3.4e-08 Score=103.25 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=119.9
Q ss_pred cEE-EEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCcc
Q 003208 148 RSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 148 ~~l-as~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
+++ ++-..++.|.|.|..+.+.+.++...... -..+.+ ++++.++++.+.||.|.++|+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~-h~~~~~---s~Dgr~~yv~~rdg~vsviD~~--------------- 66 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP-HAGLKF---SPDGRYLYVANRDGTVSVIDLA--------------- 66 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE-EEEEE----TT-SSEEEEEETTSEEEEEETT---------------
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc-eeEEEe---cCCCCEEEEEcCCCeEEEEECC---------------
Confidence 444 45566899999999999999998754432 222333 7899999999999999999998
Q ss_pred CCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
+.+.+..++.. ....++++++||++++++. .++.+.++|.++.+. ++.+......
T Consensus 67 ------------------~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-----v~~I~~~~~~ 122 (369)
T PF02239_consen 67 ------------------TGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-----VKTIPTGGMP 122 (369)
T ss_dssp ------------------SSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-----EEEEE--EE-
T ss_pred ------------------cccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccc-----eeeccccccc
Confidence 67777777653 4467899999999988664 689999999988665 4433211111
Q ss_pred --ccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEE-eCCCcEEEEecC
Q 003208 306 --GHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQ 378 (839)
Q Consensus 306 --~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~-~~dg~i~iw~~~ 378 (839)
...+++..+..+ +.++++--+.+.|.+-|. +.+.+..-....++......|+|++++++++ ..++.|-++|.+
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 134566666655 335556666688888887 3333322222223347788999999987665 456788888874
Q ss_pred C
Q 003208 379 A 379 (839)
Q Consensus 379 ~ 379 (839)
.
T Consensus 203 ~ 203 (369)
T PF02239_consen 203 T 203 (369)
T ss_dssp T
T ss_pred c
Confidence 4
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.2e-08 Score=98.29 Aligned_cols=205 Identities=16% Similarity=0.204 Sum_probs=132.2
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeec
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~ 212 (839)
-.+..++|++ .-..+|++..|-.|++||-.. .+...++......+.++++-.. ....++.|+. +-|.+|....
T Consensus 99 ~dlr~~aWhq---H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl--saselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQ---HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL--SASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred cceeeEeech---hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC--Ccceeeeeec-ceeEEEEcCc
Confidence 3577889988 667788999999999999876 4444555444334556666333 3345666665 5689998761
Q ss_pred cccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccCccC
Q 003208 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWK 291 (839)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~ 291 (839)
.-... +.++.... ....+..-.|| ..|+++.|++||..+++++. |..|+|||..++..
T Consensus 172 tln~~-----------------r~~~~~s~--~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~- 230 (445)
T KOG2139|consen 172 TLNAN-----------------RNIRMMST--HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK- 230 (445)
T ss_pred ccccc-----------------cccccccc--cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-
Confidence 11000 00000000 01122334566 78999999999999999874 67899999998766
Q ss_pred CCCCceeeeceEee-ccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEe
Q 003208 292 DSDSIEEVGSSVLY-GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 292 ~~~~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
. .+. .-.+.+.-+.|+ +.+++.+..|+..++|+. ..........-.+ .|...+|+|+|++|+-..
T Consensus 231 ----~------pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 231 ----I------PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFAC 299 (445)
T ss_pred ----c------cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEE
Confidence 1 222 234567789999 589999999999999966 2222222222344 499999999998654443
Q ss_pred CCCcEEEEec
Q 003208 368 FDSAIKVHQF 377 (839)
Q Consensus 368 ~dg~i~iw~~ 377 (839)
. |.-++|.+
T Consensus 300 s-gsp~lysl 308 (445)
T KOG2139|consen 300 S-GSPRLYSL 308 (445)
T ss_pred c-CCceEEEE
Confidence 2 23455655
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.22 E-value=8.8e-09 Score=107.68 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=166.6
Q ss_pred CCcCccccccCCCceeee------e-eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEe
Q 003208 2 GKKDLSEWRLDVGQYLGE------I-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~~~~------V-t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 73 (839)
+++++.+.|..+.+..+. + ..++|+ || ++++++.+ |+.|.++|+.+++.+++++... ...++++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s--~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFS--PD----GRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-T--T-----SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEec--CC----CCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEE
Confidence 467889999888763332 2 346789 98 77777767 8999999999999999998743 5789999
Q ss_pred cccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC-------CCcceEEEEEeeccC
Q 003208 74 NFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCN 145 (839)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~I~~~~~~~~~~ 145 (839)
+ +||+ .++++ ...+.+.|+|.++ +++++.+.. ....+.++..+|
T Consensus 86 s-------~DG~---~~~v~n~~~~~v~v~D~~t---------------le~v~~I~~~~~~~~~~~~Rv~aIv~s~--- 137 (369)
T PF02239_consen 86 S-------PDGK---YVYVANYEPGTVSVIDAET---------------LEPVKTIPTGGMPVDGPESRVAAIVASP--- 137 (369)
T ss_dssp ---------TTT---EEEEEEEETTEEEEEETTT-----------------EEEEEE--EE-TTTS---EEEEEE-S---
T ss_pred c-------CCCC---EEEEEecCCCceeEecccc---------------ccceeecccccccccccCCCceeEEecC---
Confidence 9 9985 33333 4589999999875 455555433 234677787787
Q ss_pred CCcEEEEEeC-CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE-eecCCeEEEEEeeccccccCCCCCC
Q 003208 146 GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 146 ~~~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
....++..-. .+.|-+-|..+...+...............+ ++++.++++ ...++.|-++|.+
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~---dpdgry~~va~~~sn~i~viD~~------------ 202 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF---DPDGRYFLVAANGSNKIAVIDTK------------ 202 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE----TTSSEEEEEEGGGTEEEEEETT------------
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc---CcccceeeecccccceeEEEeec------------
Confidence 7775555544 4778777877665443222112222333333 577877655 4567789999987
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEe----cCCCCeEEEE-------Ec--CCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----GHEGSIFRIE-------WS--SCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~-------~~--~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
+.+.+..+. .|...+..+- |. -.+...++.-....+.+||....+.
T Consensus 203 ---------------------~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 203 ---------------------TGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp ---------------------TTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ---------------------cceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 222222221 2333333321 11 1122222222223455677666554
Q ss_pred CCCCCceeeeceEeeccccceEEeEEC--CCEEEEE----eCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEE
Q 003208 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA----GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~----~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l 363 (839)
++ .+.....+ ..+..+ ++++... ...++|.++|. +.+.+.++....+..+..+.|+++|+.+
T Consensus 262 -----v~-----~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 262 -----VK-----TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -----EE-----EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred -----EE-----EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 33 33333333 445555 3566665 45689999999 5666667654444358899999999866
Q ss_pred EEEeCC--CcEEEEecCC
Q 003208 364 VTAGFD--SAIKVHQFQA 379 (839)
Q Consensus 364 ~t~~~d--g~i~iw~~~~ 379 (839)
.....+ +.|.+||..+
T Consensus 331 ~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEEEE--TTEEEEEETTT
T ss_pred EEEEecCCCEEEEEECCC
Confidence 555443 4799999855
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.4e-08 Score=103.69 Aligned_cols=305 Identities=13% Similarity=0.140 Sum_probs=183.6
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE---
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--- 94 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~--- 94 (839)
.+....+++ ++ |++++.+.+..++|++..++..+.+... . .+.++.|+ |.| .++.++
T Consensus 35 ~~~~v~~~S--~~----G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fS-------P~g----~yL~T~e~~ 94 (566)
T KOG2315|consen 35 RPCNVFAYS--NN----GRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFS-------PKG----NYLLTWEPW 94 (566)
T ss_pred CcceeEEEc--CC----CcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeec-------ccc----ccccccccc
Confidence 446677788 77 8999999999999999998875444443 2 58999999 776 555554
Q ss_pred ---cC-----cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 95 ---GE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 95 ---~~-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
.+ ..+++|+.++.. .......+...+| +..|++ +..+.| =-..+.+.+|+..+
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~-------------~~s~~q~k~Q~~W--~~qfs~---dEsl~a-rlv~nev~f~~~~~ 155 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGV-------------QRSQIQKKMQNGW--VPQFSI---DESLAA-RLVSNEVQFYDLGS 155 (566)
T ss_pred ccccCCCCCCCceeeeeeccce-------------ehhheehhhhcCc--cccccc---chhhhh-hhhcceEEEEecCC
Confidence 22 357799988622 1111122223344 778887 554332 22256799999977
Q ss_pred CceE-EEEecCCceeEEEEeeccCCccceEEEE-----eecCCeEEEEEeeccccccCCCCCCCccC---------CCCC
Q 003208 167 SSII-LEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHA---------HGSS 231 (839)
Q Consensus 167 ~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~l~s-----g~~dg~i~vw~~~~~~~~~~~~~~~~~~~---------~~~~ 231 (839)
.+.+ ..++.. +...+.+. ..+....||+ ++.-+.|++|................+-. .+..
T Consensus 156 f~~~~~kl~~~-~i~~f~lS---pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 156 FKTIQHKLSVS-GITMLSLS---PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred ccceeeeeecc-ceeeEEec---CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 5433 233321 11122221 2334445554 45567899998762211111000000000 0000
Q ss_pred C----------------CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcccCccCCC
Q 003208 232 S----------------DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKDS 293 (839)
Q Consensus 232 ~----------------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~ 293 (839)
+ ...++.+.... .......+ ..+++|.++.|+|+++.++++ -.--.+.|+|++..-.
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--- 306 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--- 306 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---
Confidence 0 11222222221 11111111 236899999999999877664 4567899999987532
Q ss_pred CCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEe
Q 003208 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 294 ~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
+.--+++-.++-|+ +++++.+|.+ |.+-|||+ +.+++..+..... +-+.|+|||++++|+.
T Consensus 307 ----------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t---t~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 307 ----------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT---TVFEWSPDGEYFLTAT 373 (566)
T ss_pred ----------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc---eEEEEcCCCcEEEEEe
Confidence 22234556677787 6888888765 78999999 7777777766543 4578999999999887
Q ss_pred C------CCcEEEEecCCcCcc
Q 003208 368 F------DSAIKVHQFQAFLPG 383 (839)
Q Consensus 368 ~------dg~i~iw~~~~~~~~ 383 (839)
. |+.++||+..+..+.
T Consensus 374 TaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred ccccEEecCCeEEEEecCceee
Confidence 4 789999999875543
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=4e-09 Score=113.98 Aligned_cols=201 Identities=6% Similarity=0.068 Sum_probs=125.1
Q ss_pred ccCCCcceEEEEEeeccCCCcEEEEEeC---CCcEEEEecCCCceEEE--EecCCceeEEEEeeccCCccceEEEEe-ec
Q 003208 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASG-TI 201 (839)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~las~~~---d~~i~vwd~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~sg-~~ 201 (839)
+..+...+.+.+|+| +|+.||..+. +..|.+|++.+++.... ...+.. ...+ +|++..|+.. +.
T Consensus 194 lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~----~~~~---SPDG~~La~~~~~ 263 (429)
T PRK03629 194 VHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG----APAF---SPDGSKLAFALSK 263 (429)
T ss_pred eecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC----CeEE---CCCCCEEEEEEcC
Confidence 344667899999999 9998886542 45799999988754332 222222 2333 6889877754 44
Q ss_pred CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC-C
Q 003208 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (839)
Q Consensus 202 dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~ 278 (839)
+| .|++||+. .+.. ..+..+...+....|+|||+.|+..+.+ +
T Consensus 264 ~g~~~I~~~d~~---------------------------------tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 264 TGSLNLYVMDLA---------------------------------SGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CCCcEEEEEECC---------------------------------CCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence 54 58888876 3332 2333444567889999999998877754 4
Q ss_pred cEEEE--EcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCceEEEeecccCCce
Q 003208 279 SARIW--EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (839)
Q Consensus 279 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~h~~~~i 351 (839)
...+| |+.++.. + .+..+........|+ +++++..+.+ ..|.+||+.+.....+.... ..
T Consensus 310 ~~~Iy~~d~~~g~~------~-----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~ 376 (429)
T PRK03629 310 RPQVYKVNINGGAP------Q-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LD 376 (429)
T ss_pred CceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CC
Confidence 44555 5554432 1 222223334566777 5677665443 35888998433344444322 23
Q ss_pred EEEEEccCCCEEEEEeCCCc---EEEEecCCcCccCc
Q 003208 352 WRCLYDSLSSLLVTAGFDSA---IKVHQFQAFLPGSL 385 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~dg~---i~iw~~~~~~~~~~ 385 (839)
....|+|||++|+.++.++. +.++++++...+.+
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 46789999999999888764 66677766544433
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=1.8e-09 Score=103.16 Aligned_cols=251 Identities=12% Similarity=0.116 Sum_probs=163.0
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC-CCceEEEEe--cCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIILEVH--SPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~-~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
..+++.++||.+.|++...-| ..+-+.+.+.|.+++||--. .++....+. .+..+ .++.+ ..+...|+.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~---~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~--~~~~y---~~e~~~L~v 85 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP---KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPC--SAMEY---VSESRRLYV 85 (404)
T ss_pred hhhhhhhcCchhhhhhheecc---CCCCeEEccccceeeeEEeccccccCchhhhhCCCCc--eEeee---eccceEEEE
Confidence 467788999999999999988 66778999999999999543 344444433 23332 23333 356778899
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 278 (839)
|-..|++.-+.+... -......+....|...|..+-|+...+++++++.|.
T Consensus 86 g~~ngtvtefs~sed-----------------------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 86 GQDNGTVTEFALSED-----------------------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred EEecceEEEEEhhhh-----------------------------hhhcchhhhhhhhhcceeeEEecCCceeEEEecccc
Confidence 999999998877510 002233445568999999999999889999999998
Q ss_pred cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC---CCceEEEeecccCCceEEEE
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRGIWRCL 355 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~---~~~~~~~~~~h~~~~i~~~~ 355 (839)
.+.---.+.+... +.+.+ ...-.++.+.-.+...|...|.+..-.+ .-.++.++.+|.+ ++.+++
T Consensus 137 ~~~~hc~e~~~~l--------g~Y~~---~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~-~~~~l~ 204 (404)
T KOG1409|consen 137 QFAWHCTESGNRL--------GGYNF---ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG-EVTCLK 204 (404)
T ss_pred ceEEEeeccCCcc--------cceEe---eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc-ceEEEE
Confidence 7643333332220 00011 1111122222114455555565555444 4567889999998 799999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEE
Q 003208 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLY 434 (839)
Q Consensus 356 ~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~ 434 (839)
|.+....|.+|..|..+.+||+-+..-. .....++.+.|+.+...+-- +++
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~----------------------------~~el~gh~~kV~~l~~~~~t~~l~ 256 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGT----------------------------AYELQGHNDKVQALSYAQHTRQLI 256 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcce----------------------------eeeeccchhhhhhhhhhhhheeee
Confidence 9999999999999999999999542110 11122334445555555433 566
Q ss_pred EEeccceEEEEEecC
Q 003208 435 IATNHGYLYHTKLCD 449 (839)
Q Consensus 435 ~~~~~g~i~~~~~~~ 449 (839)
+...+|.|..|+...
T Consensus 257 S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNV 271 (404)
T ss_pred eccCCCeEEEEeccc
Confidence 667788887776543
No 236
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=2.8e-10 Score=118.75 Aligned_cols=291 Identities=16% Similarity=0.188 Sum_probs=187.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCC-CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
-.+++.++..+ |. |+-++.++.--+.|-|+.. +.+.+-+.....-.|-..+|++. |-- +..++.+
T Consensus 23 v~~~~~a~si~--p~----grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h-----~a~---~~wiVst 88 (1081)
T KOG0309|consen 23 VDGGFNAVSIN--PS----GRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPH-----PAK---PYWIVST 88 (1081)
T ss_pred ecCcccceeec--cc----cchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccC-----CCC---ceeEEec
Confidence 34678899998 87 5656655544467777765 34444444434445777888854 222 2778888
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
....-.+|++..... ......+.||...|+++.|+| .....+|+++.|..+..||++....-.-..
T Consensus 89 s~qkaiiwnlA~ss~------------~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSS------------NAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred CcchhhhhhhhcCCc------------cceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcceeee
Confidence 889999999986552 334456789999999999999 356789999999999999998754322111
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
..-......+.+ .-.++.. .+.+....|++||.+ ....++..+++
T Consensus 155 ~~w~s~asqVkw--nyk~p~v-lasshg~~i~vwd~r--------------------------------~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 155 SSWRSAASQVKW--NYKDPNV-LASSHGNDIFVWDLR--------------------------------KGSTPLCSLKG 199 (1081)
T ss_pred ecccccCceeee--cccCcch-hhhccCCceEEEecc--------------------------------CCCcceEEecc
Confidence 111111112222 1123333 444556789999988 24568889999
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-------------CE
Q 003208 255 HEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-------------SF 320 (839)
Q Consensus 255 h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~ 320 (839)
|...|.++.|+. ....+.+++.|++|++||..+.... .+ .......+||.-.|.| +.
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e----~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~ 270 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE----SK-----RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM 270 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccc----cc-----eeccccCcceeccccccCceeEeccccCCee
Confidence 999999999976 3457899999999999999875431 01 1122234455444431 11
Q ss_pred EEEEeCCCeEEEEcC--CCceEEEeecccCCceEEEEEc--------cC--CCEEEEEeCCCcEEEEecCC
Q 003208 321 IITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYD--------SL--SSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 321 l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~~~~~--------~~--~~~l~t~~~dg~i~iw~~~~ 379 (839)
+.---.+.....|+. ..+++.++.+|.. .|.-..|- .+ .-.|+|=+.|..+++|-+..
T Consensus 271 v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 271 VPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 111122333344555 3478899999987 35444432 12 23799999999999998854
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=8.2e-09 Score=105.18 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=146.9
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
.-+.|..+ |||+ ++++++- .-.|++||+..-+ ++..+.+. ..+..+.... .
T Consensus 53 ast~ik~s-------~DGq---Y~lAtG~YKP~ikvydlanLS-------------LKFERhlD---ae~V~feiLs--D 104 (703)
T KOG2321|consen 53 ASTRIKVS-------PDGQ---YLLATGTYKPQIKVYDLANLS-------------LKFERHLD---AEVVDFEILS--D 104 (703)
T ss_pred ccceeEec-------CCCc---EEEEecccCCceEEEEcccce-------------eeeeeccc---ccceeEEEec--c
Confidence 35677888 9995 5555544 5799999997532 22222222 2333333322 1
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
+-..++.-..|.+|.+...... ...+..|.. ...+.++. +...+ ..++....|+-+++.
T Consensus 105 D~SK~v~L~~DR~IefHak~G~--hy~~RIP~~--GRDm~y~~--~scDl-y~~gsg~evYRlNLE-------------- 163 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYGR--HYRTRIPKF--GRDMKYHK--PSCDL-YLVGSGSEVYRLNLE-------------- 163 (703)
T ss_pred chhhheEeecCceeeehhhcCe--eeeeecCcC--CccccccC--CCccE-EEeecCcceEEEEcc--------------
Confidence 4444555566777776543221 122222221 12233322 22333 333344678888888
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec-eEe
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVL 304 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~ 304 (839)
.+..+..+....+.++++..++....|++|+.||.|-+||.++... +..+.. ...
T Consensus 164 -------------------qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-----v~~l~~~~~v 219 (703)
T KOG2321|consen 164 -------------------QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-----VGTLDAASSV 219 (703)
T ss_pred -------------------ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-----heeeeccccc
Confidence 6677777777778999999999999999999999999999998765 222210 122
Q ss_pred ecccc-----ceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccC-CceEEEEEccC--CCEEEEEeCCCcEE
Q 003208 305 YGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSL--SSLLVTAGFDSAIK 373 (839)
Q Consensus 305 ~~h~~-----~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~-~~i~~~~~~~~--~~~l~t~~~dg~i~ 373 (839)
..|.. .|+++.|. |-.++.|..+|.+.|||+ ..+++. .+.|.. -+|..+.|.+. +..+++.. ...++
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~k 297 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILK 297 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEecc-hHHhh
Confidence 23333 49999998 568999999999999999 444433 333433 36888999665 34455443 45889
Q ss_pred EEecC
Q 003208 374 VHQFQ 378 (839)
Q Consensus 374 iw~~~ 378 (839)
|||-.
T Consensus 298 iWd~~ 302 (703)
T KOG2321|consen 298 IWDEC 302 (703)
T ss_pred hcccc
Confidence 99974
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=1.8e-08 Score=94.39 Aligned_cols=269 Identities=15% Similarity=0.092 Sum_probs=160.3
Q ss_pred CeeEEEECCCCeee--eEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 44 SQVLLYDLEAGTLI--RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 44 ~~v~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
|.+.+|++.+-+.+ .+++.-....+..|.|+-.. .+|. ..++.+-..|.|.++..+.... ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~----~~g~--~~l~~a~a~G~i~~~r~~~~~s-s~~-------- 110 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRE----TDGD--FNLLDAHARGQIQLYRNDEDES-SVH-------- 110 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeecc----CCcc--ceeeeccccceEEEEeecccee-eee--------
Confidence 46888988775543 35555444567888887331 3331 0233334579999998874320 000
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE--EEEecCCceeEEEEeeccCCccceEEEEe
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASG 199 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~l~sg 199 (839)
++.+...+--...-.++.|++ .+..++++-.+|.+.+-+....... +..+.|+ -.+|.+.|- ..+.+++.+|
T Consensus 111 L~~ls~~ki~~~~~lslD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He-~E~Wta~f~--~~~pnlvytG 184 (339)
T KOG0280|consen 111 LRGLSSKKISVVEALSLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE-FEAWTAKFS--DKEPNLVYTG 184 (339)
T ss_pred ecccchhhhhheeeeEEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccc-eeeeeeecc--cCCCceEEec
Confidence 111111111111245777888 8888988888898885555433322 2444444 346666663 3455899999
Q ss_pred ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee-EEEecCCCCeEEEEEcC-CCCEEEEEeCC
Q 003208 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSS-CGSKLVSVSDD 277 (839)
Q Consensus 200 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~-~~~~l~s~s~d 277 (839)
+.|+.+..||++. ..+.+ +..+-|...|.+|.-+| .+.+|++|+.|
T Consensus 185 gDD~~l~~~D~R~--------------------------------p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 185 GDDGSLSCWDIRI--------------------------------PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred CCCceEEEEEecC--------------------------------CcceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 9999999999981 12222 22456889999999886 67899999999
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCC---EEEEEeCCCeEEEEcCC---Cc---eEEEeecccC
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSD---GK---QLKMIKEHIG 348 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~~~dg~i~vw~~~---~~---~~~~~~~h~~ 348 (839)
..|++||.++-..+ + ....-.+.||.+..++. .++.++.-+-.+|-+.+ .+ .....+.|.+
T Consensus 233 e~i~~~DtRnm~kP-------l---~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKP-------L---FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred cceeeeehhcccCc-------c---ccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 99999999964331 1 22223478999998852 22333333345666552 22 2233344444
Q ss_pred CceEEEEEccCCCEEEEEeC-CCcEE-EEe
Q 003208 349 RGIWRCLYDSLSSLLVTAGF-DSAIK-VHQ 376 (839)
Q Consensus 349 ~~i~~~~~~~~~~~l~t~~~-dg~i~-iw~ 376 (839)
-...-.|......|+|++. |+.++ +|-
T Consensus 303 -l~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 303 -LCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred -eeeccccccccceeeeeeccccceeeeee
Confidence 3444445444457888764 66644 664
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.3e-08 Score=106.90 Aligned_cols=233 Identities=13% Similarity=0.051 Sum_probs=144.0
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE---cCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.|.++|.+.+.. ..+... ...+...+|+ |||+ .++.++ ++..|.+|++..+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~-~~~~~~p~wS-------PDG~---~la~~s~~~g~~~i~i~dl~~G~------------- 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRS-PQPLMSPAWS-------PDGS---KLAYVTFESGRSALVIQTLANGA------------- 234 (429)
T ss_pred eEEEEcCCCCCC-EEeecC-CCceeeeEEc-------CCCC---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 799999765443 333333 3368899999 9984 333232 34578899886533
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEE-eCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
.+.+..+.++ +...+|+| +++.|+.. +.++ .|.+||+.+++......... ......+ +|++..|+.
T Consensus 235 ~~~l~~~~~~---~~~~~~SP---DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~--~~~~~~w---SPDG~~I~f 303 (429)
T PRK03629 235 VRQVASFPRH---NGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS--NNTEPTW---FPDSQNLAY 303 (429)
T ss_pred eEEccCCCCC---cCCeEECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC--CcCceEE---CCCCCEEEE
Confidence 2334444444 44689999 99988754 3344 58899998876544333221 2233333 688888776
Q ss_pred eec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 003208 199 GTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (839)
Q Consensus 199 g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 277 (839)
.+. ++...+|.+... .+. ...+..+........|+|+|++|+..+.+
T Consensus 304 ~s~~~g~~~Iy~~d~~-------------------------------~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 304 TSDQAGRPQVYKVNIN-------------------------------GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred EeCCCCCceEEEEECC-------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 554 455566654300 121 22333334456678899999998876543
Q ss_pred ---CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCe---EEEEcCCCceEEEeecccCC
Q 003208 278 ---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGSDGKQLKMIKEHIGR 349 (839)
Q Consensus 278 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~---i~vw~~~~~~~~~~~~h~~~ 349 (839)
..|.+||+.++.. + .+.. ........|+ +..|+..+.++. +.+++++|+....+..|.+
T Consensus 352 ~g~~~I~~~dl~~g~~------~-----~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~- 418 (429)
T PRK03629 352 GGQQHIAKQDLATGGV------Q-----VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG- 418 (429)
T ss_pred CCCceEEEEECCCCCe------E-----EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC-
Confidence 3588899877643 2 1111 1122345676 678888877764 6777888888888887776
Q ss_pred ceEEEEEcc
Q 003208 350 GIWRCLYDS 358 (839)
Q Consensus 350 ~i~~~~~~~ 358 (839)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 577788876
No 240
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=1.9e-05 Score=92.34 Aligned_cols=463 Identities=13% Similarity=0.122 Sum_probs=240.9
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeC---CeeEEEECCCCe---eeeEEee----ecCceEEeEEecccccccCCCccce
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSG---SQVLLYDLEAGT---LIRPFQV----FHGIRLHGISCNFINCTEGSVSTRV 87 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~---~~v~iwd~~~~~---~~~~~~~----~~~~~v~~i~~~~~~~~~~~~~~~~ 87 (839)
.++++.+|. +. +..-+++.+.. ..|.+-...... .+..+.. .....|.++.+. ++..
T Consensus 22 ~~~~~~~~d--~~--sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl-------~d~~-- 88 (928)
T PF04762_consen 22 LPITATAFD--SD--SDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYL-------ADSE-- 88 (928)
T ss_pred cccceEEEe--cC--CCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEec-------cCCC--
Confidence 357788887 55 22344444442 234444433322 3333332 123468889888 6653
Q ss_pred eeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 88 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
.++++..+|.|.+...+.... . ...+.+..+. ..|.+++|+| |+.+||..+.++++.+-. .+.
T Consensus 89 -~l~~~~~~Gdi~~~~~~~~~~-~--------~~~E~VG~vd---~GI~a~~WSP---D~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 89 -SLCIALASGDIILVREDPDPD-E--------DEIEIVGSVD---SGILAASWSP---DEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred -cEEEEECCceEEEEEccCCCC-C--------ceeEEEEEEc---CcEEEEEECC---CcCEEEEEeCCCEEEEEe-ccc
Confidence 677778889998884332110 0 0144555444 6799999999 999999998888888764 355
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
..+....-... .......++.+.-..=.-|.-..++.+.+ ++-+......
T Consensus 152 d~i~E~~l~~~-----------~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~-------------------~~~~p~~~~~ 201 (928)
T PF04762_consen 152 DPISEVPLDSD-----------DFGESKHVSVGWGKKETQFHGSAGKAAAR-------------------QLRDPTVPKV 201 (928)
T ss_pred eEEEEeecCcc-----------ccCCCceeeeccCcccCccCcchhhhhhh-------------------hccCCCCCcc
Confidence 55544332110 11111222222110000000000000000 0000000000
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~ 319 (839)
....+. +.+.-..|+|..||.++|+.+. -+.+|+|+-+.. . . .+...-.+--.+++|. |+
T Consensus 202 d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L------~----stSE~v~gLe~~l~WrPsG~ 269 (928)
T PF04762_consen 202 DEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-L------Q----STSEPVDGLEGALSWRPSGN 269 (928)
T ss_pred ccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-E------E----eccccCCCccCCccCCCCCC
Confidence 112233 5566678999999999998774 267999987632 2 1 0111111112346775 67
Q ss_pred EEEEEeC---CCeEEEEcCCCceEEEeecc---cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc--CccCcCCCCcc
Q 003208 320 FIITAGE---DCTCRVWGSDGKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF--LPGSLESHPEA 391 (839)
Q Consensus 320 ~l~s~~~---dg~i~vw~~~~~~~~~~~~h---~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~ 391 (839)
+|++.-. ...|.+|..+|-....+.-. ....|..+.|++|+..|+..-.|. |++|-...- .++
T Consensus 270 lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK-------- 340 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK-------- 340 (928)
T ss_pred EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE--------
Confidence 8877654 46788888877655554432 233689999999999999977664 999987431 010
Q ss_pred cccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC--eEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEE
Q 003208 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIIC 469 (839)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~ 469 (839)
..+..+. ...+..+.|+|.. ++.+.+.+|.+..+++. |. +..+
T Consensus 341 ---------qei~~~~-----------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------~~-v~~s-------- 385 (928)
T PF04762_consen 341 ---------QEIRFSS-----------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------WD-VSRS-------- 385 (928)
T ss_pred ---------EEEEccC-----------CCCCCceEECCCCCCEEEEEecCCcEEEEEEE------EE-EEec--------
Confidence 0011111 1224458888854 67777776777544321 21 1111
Q ss_pred eeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcc-eeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEE
Q 003208 470 MDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL-SFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (839)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 548 (839)
+.. ++.+...+++-.. .++.+-.+.....-|-. ...+.+ +..+.. .++++++..+++-..||.|.
T Consensus 386 ----~~~---~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~----~~~v~~--vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 386 ----PGS---SPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELEL----PSPVND--VAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred ----CCC---CccCceEEEEEeC-CeEEEecccccCCCchHhceEEcC----CCCcEE--EEEeCCCCeEEEEECCCCEE
Confidence 100 0112233343332 36667666544332221 112211 222333 56777777788888999999
Q ss_pred EeeecCCCCcccccCCccceeee----eeccccccCceEEEEeeecCCCEEEEecCC---ccEEEEeccc
Q 003208 549 LWQLCDPFSSVCYESSKTNNVFL----VAEFSSCFGARIMCLDASFEDEVLFCGDLR---GNLVLFPLLR 611 (839)
Q Consensus 549 ~wd~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~I~~l~~s~~~~~la~gs~d---g~i~iw~~~~ 611 (839)
+|..................+.. ..... .-...+..++|..+..++++.+.+ +.+.++++..
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 452 IYEWDLKNMWSVKPPKLLSSISLDSMDISDSE-LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred EEEecCCCcccccCcchhhhcccccccccccc-cccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 99876543211000000000000 00000 124457788888888877777665 6788888753
No 241
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=1.1e-07 Score=102.00 Aligned_cols=265 Identities=11% Similarity=0.063 Sum_probs=152.2
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~ 114 (839)
+.+++.+.++.|..+|..+|+++.+.+..... ....... ++ .+++...++.+..+|..++.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-~~~p~v~--------~~----~v~v~~~~g~l~ald~~tG~------ 126 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERL-SGGVGAD--------GG----LVFVGTEKGEVIALDAEDGK------ 126 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCc-ccceEEc--------CC----EEEEEcCCCEEEEEECCCCc------
Confidence 34444444889999999999998877754321 1122222 22 66666778999999987533
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeE----EEEeeccCC
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLWGDN 190 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~s~~~~~~~ 190 (839)
.+..... .+.+.+.-.. .+..++.++.++.+..||..+++.+.+......... .+...
T Consensus 127 ---------~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---- 188 (377)
T TIGR03300 127 ---------ELWRAKL-SSEVLSPPLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---- 188 (377)
T ss_pred ---------Eeeeecc-CceeecCCEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE----
Confidence 2222221 1222211111 234566677899999999999988776653321100 01111
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC--CCeEEEEEcC--
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSS-- 266 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~-- 266 (839)
.+..++.+..++.+..+|+.+++.. |..... ...+.. ..+..+.-+|
T Consensus 189 -~~~~v~~~~~~g~v~ald~~tG~~~-----------------------W~~~~~-----~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 189 -ADGGVLVGFAGGKLVALDLQTGQPL-----------------------WEQRVA-----LPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred -ECCEEEEECCCCEEEEEEccCCCEe-----------------------eeeccc-----cCCCCCchhhhhccCCccEE
Confidence 1236777888899999998733211 110000 000000 0000010011
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeec
Q 003208 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (839)
Q Consensus 267 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~ 345 (839)
.+..++.++.++.++.||..+++.. ..... .........++.++.++.||.+..+|. +|+.+.....
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~-----------W~~~~-~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVL-----------WKRDA-SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEE-----------Eeecc-CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccc
Confidence 3457888889999999999877541 11111 112233345788889999999999999 7877765532
Q ss_pred ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 346 h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.......+... .+..+++++.+|.|.++|.+.
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 22211222222 356889999999999999853
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1.7e-08 Score=96.41 Aligned_cols=235 Identities=15% Similarity=0.142 Sum_probs=143.5
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce-----EEEEecCC--cee---------EEEEeeccCCccceE
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----ILEVHSPE--RCL---------LYSMKLWGDNLEALR 195 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~--~~~---------~~s~~~~~~~~~~~~ 195 (839)
.+-|.++.|.. .|.+||||..+|.|.++.-..... ....+.|. -.. +..+.++ ...+...
T Consensus 25 adiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~-~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL-DDGNLAE 100 (433)
T ss_pred hcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec-CCCCccE
Confidence 46789999999 999999999999999997654322 11122211 111 1223332 2234456
Q ss_pred EEEeecCCeEEEEEeeccccccCCC-CCCCccCCCCCCCceeeEee-----cccccceeeEEE-ecCCCCeEEEEEcCCC
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSSDFKCFKLQ-----DQQHTAVNLFRL-VGHEGSIFRIEWSSCG 268 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~h~~~V~~l~~~~~~ 268 (839)
++..+.|.+|++|.+.......... -+.... ...-..+++- +......+.+.+ .+|...|.+|.++.|+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~----~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGP----PGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCC----CCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 6777899999999998544333111 000010 0011112211 111112233333 4799999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC---CEEEEEeCCCeEEEEcCCCceE-----
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQL----- 340 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~----- 340 (839)
..++|+ +|-.|.+|++.-... +.++.-++|..+..-+.-|++..|+| +.++-.+..|+|++-|+....+
T Consensus 177 Et~lSA-DdLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ceEeec-cceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 988887 567899999876443 11233334444445556788899984 7888889999999999842111
Q ss_pred EEeecc---c--------CCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 341 KMIKEH---I--------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 341 ~~~~~h---~--------~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+.+... . -..|..+.|+++|+++++-.. -+|++||+.
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 111100 0 014778899999999987654 489999984
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=4.7e-08 Score=106.45 Aligned_cols=200 Identities=12% Similarity=0.063 Sum_probs=126.9
Q ss_pred eEeccCCCcceEEEEEeeccCCCcEEEEEeC---CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-Eee
Q 003208 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGT 200 (839)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~ 200 (839)
.+.+..|...+.+.+|+| +++.|+..+. +..|.+||+.+++... +..... ......+ +|++..|+ +.+
T Consensus 194 ~~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g-~~~~~~~---SPDG~~la~~~~ 265 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPG-MTFAPRF---SPDGRKVVMSLS 265 (435)
T ss_pred cEEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCC-cccCcEE---CCCCCEEEEEEe
Confidence 344557788999999999 9998887653 4689999998876533 221111 2223333 68887665 555
Q ss_pred cCCe--EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-C
Q 003208 201 IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D 277 (839)
Q Consensus 201 ~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d 277 (839)
.++. |++||+. .+. ...+..+........|+|||++|+..+. +
T Consensus 266 ~~g~~~Iy~~d~~---------------------------------~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 266 QGGNTDIYTMDLR---------------------------------SGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred cCCCceEEEEECC---------------------------------CCc-eEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 5655 6666765 222 2345556666778899999999887764 3
Q ss_pred C--cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCceEEEeecccCCc
Q 003208 278 R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRG 350 (839)
Q Consensus 278 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~h~~~~ 350 (839)
+ .|.++|+..+.. + .+..+...+....|+ ++.|+....+ ..|.+|++.+.....+.. .. .
T Consensus 312 g~~~Iy~~d~~g~~~------~-----~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~-~ 378 (435)
T PRK05137 312 GSPQLYVMNADGSNP------R-----RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GF-L 378 (435)
T ss_pred CCCeEEEEECCCCCe------E-----EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CC-C
Confidence 3 577888766543 2 222233445566787 5677665443 367888885544444432 22 3
Q ss_pred eEEEEEccCCCEEEEEeCC------CcEEEEecCC
Q 003208 351 IWRCLYDSLSSLLVTAGFD------SAIKVHQFQA 379 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~d------g~i~iw~~~~ 379 (839)
+....|+|||+.|+..+.+ ..+.++++.+
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 6678999999987765543 2466667654
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2.8e-08 Score=108.07 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=123.0
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeC---CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-Eeec
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~ 201 (839)
+.+..+...+.+.+|+| +++.|+..+. +..|.+||+.+++........ .......+ ++++..|+ +.+.
T Consensus 197 ~~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~---SpDG~~l~~~~s~ 268 (433)
T PRK04922 197 QTILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--GINGAPSF---SPDGRRLALTLSR 268 (433)
T ss_pred eEeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--CCccCceE---CCCCCEEEEEEeC
Confidence 34456677899999999 9999888764 346999999877654322111 11223333 68887665 4455
Q ss_pred CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CC
Q 003208 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (839)
Q Consensus 202 dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~ 278 (839)
+| .|++||+. .+. ...+..+.......+|+|||++|+.++. ++
T Consensus 269 ~g~~~Iy~~d~~---------------------------------~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g 314 (433)
T PRK04922 269 DGNPEIYVMDLG---------------------------------SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG 314 (433)
T ss_pred CCCceEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 55 58888887 332 2334455555677899999998887764 44
Q ss_pred c--EEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC---eEEEEcCCCceEEEeecccCCce
Q 003208 279 S--ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGI 351 (839)
Q Consensus 279 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~h~~~~i 351 (839)
. |.++++.++.. + .+..+.......+|+ +++++..+.++ .|.+|++.+.....+.. .. ..
T Consensus 315 ~~~iy~~dl~~g~~------~-----~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~-~~ 381 (433)
T PRK04922 315 RPQIYRVAASGGSA------E-----RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GS-LD 381 (433)
T ss_pred CceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CC-CC
Confidence 4 66666655433 1 111122233456787 56776654332 68999994333334432 22 24
Q ss_pred EEEEEccCCCEEEEEeCC---CcEEEEecCCc
Q 003208 352 WRCLYDSLSSLLVTAGFD---SAIKVHQFQAF 380 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~ 380 (839)
....|+|||++++..+.+ +.|.++++++.
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 567899999987776653 35666676553
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.8e-08 Score=106.62 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=119.6
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCC---CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-Eeec
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~ 201 (839)
..+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++.......+. ......+ +|++..|+ +.+.
T Consensus 189 ~~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g--~~~~~~~---SPDG~~la~~~~~ 260 (427)
T PRK02889 189 QSALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG--SNSAPAW---SPDGRTLAVALSR 260 (427)
T ss_pred eEeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC--CccceEE---CCCCCEEEEEEcc
Confidence 34446778899999999 99998877643 459999998886543321111 1223333 68887776 5677
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSA 280 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i 280 (839)
+|...+|.+.. .......+..+........|+|||++|+..+. ++..
T Consensus 261 ~g~~~Iy~~d~--------------------------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~ 308 (427)
T PRK02889 261 DGNSQIYTVNA--------------------------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP 308 (427)
T ss_pred CCCceEEEEEC--------------------------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc
Confidence 88877777651 11223344445555677889999998876664 4666
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC---eEEEEcCCCceEEEeecccCCceEEEE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCL 355 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~h~~~~i~~~~ 355 (839)
.+|.+...... .+.+ ... ........|+ +++++..+.++ .|.+||+.+.....+.... ......
T Consensus 309 ~Iy~~~~~~g~----~~~l---t~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~ 377 (427)
T PRK02889 309 QIYRMPASGGA----AQRV---TFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPS 377 (427)
T ss_pred EEEEEECCCCc----eEEE---ecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCce
Confidence 77765432110 1111 211 2223345677 67777666554 6999999433333443322 245779
Q ss_pred EccCCCEEEEEeCCC
Q 003208 356 YDSLSSLLVTAGFDS 370 (839)
Q Consensus 356 ~~~~~~~l~t~~~dg 370 (839)
|+|||+.|+..+.++
T Consensus 378 ~spdg~~l~~~~~~~ 392 (427)
T PRK02889 378 FAPNGRYILYATQQG 392 (427)
T ss_pred ECCCCCEEEEEEecC
Confidence 999999887777543
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.03 E-value=2.5e-08 Score=94.37 Aligned_cols=112 Identities=20% Similarity=0.329 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---
Q 003208 255 HEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED--- 327 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d--- 327 (839)
..++|.+++|+|+++.++++ ..++.|.+||++... ...-+...+..+.|+ |+++++++.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-------------i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-------------IFSFGTQPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-------------eEeecCCCceEEEECCCCCEEEEEEccCCC
Confidence 34679999999999987654 467799999997322 122234567889999 6899988754
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeC------CCcEEEEecCCcCc
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKVHQFQAFLP 382 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~------dg~i~iw~~~~~~~ 382 (839)
|.+.+||. +.+.+.+.. |. .+..++|+|+|++++++.. |+.++||+..+..+
T Consensus 125 G~l~~wd~~~~~~i~~~~-~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFE-HS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred cEEEEEECCCCEEeeccc-cC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 67999999 556665553 33 3789999999999999874 78999999977544
No 247
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=2.4e-05 Score=91.41 Aligned_cols=296 Identities=11% Similarity=0.181 Sum_probs=170.6
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEE----ECCCC--eeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLY----DLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iw----d~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
+.|.++.|- ++ ...++++-.+|.|.+. +..+. +.+..+. . .|.+++|| ||.. .++
T Consensus 76 ~~ivs~~yl--~d---~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd---~-GI~a~~WS-------PD~E---lla 136 (928)
T PF04762_consen 76 DKIVSFQYL--AD---SESLCIALASGDIILVREDPDPDEDEIEIVGSVD---S-GILAASWS-------PDEE---LLA 136 (928)
T ss_pred CcEEEEEec--cC---CCcEEEEECCceEEEEEccCCCCCceeEEEEEEc---C-cEEEEEEC-------CCcC---EEE
Confidence 457777777 87 3345555558888888 54433 2333333 2 59999999 8873 566
Q ss_pred EEEcCcEEEEEEeeccC----------------------CCCCCCCCccccc-------ee----eeEeccCCCcceEEE
Q 003208 92 ALFGEKRVKLFELNFEL----------------------SPNSQYQPETCVN-------LS----LVQSLPRLSHWVFDV 138 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~----------------------~~~~~~~~~~~~~-------~~----~~~~~~~h~~~I~~~ 138 (839)
.+.+++++.+-.-+-.. ++..+|....... .+ ....+. +.+.-..+
T Consensus 137 ~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 137 LVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred EEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 66778887776533110 0111111100000 00 011222 44455678
Q ss_pred EEeeccCCCcEEEEEeC------CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec---CCeEEEEE
Q 003208 139 CFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVWK 209 (839)
Q Consensus 139 ~~~~~~~~~~~las~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~---dg~i~vw~ 209 (839)
+|-. ||.++|+.+. -..+|||+-+ |....+.+ +....--++++ -|.|.+||+.-. ...|.+|.
T Consensus 216 SWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 216 SWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSW---RPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccC---CCCCCEEEEEEEcCCCcEEEEEe
Confidence 8988 9999988764 2579999986 54433332 33322223333 588999998654 34555555
Q ss_pred eeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
-..-+ .+.....+......|..|.|++++..|+..-.|. |.+|...+..
T Consensus 288 rNGLr------------------------------hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 288 RNGLR------------------------------HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCcE------------------------------eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 33000 1111111223556889999999999999987766 9999988754
Q ss_pred cCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-----CCc--------eEEEeec--------
Q 003208 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-----DGK--------QLKMIKE-------- 345 (839)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-----~~~--------~~~~~~~-------- 345 (839)
.- ++..........+..+.|+ +..|.....+|.+..++. .+. .+..+.+
T Consensus 337 WY-------LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 337 WY-------LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF 409 (928)
T ss_pred EE-------EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence 31 1111222223334457787 455666666565554332 110 1111111
Q ss_pred --------------ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 346 --------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 346 --------------h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.-..+|..++|++++..+++-..||.|.+|....
T Consensus 410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 410 RRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred cccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1112689999999988899999999999999743
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.01 E-value=4e-08 Score=92.97 Aligned_cols=112 Identities=14% Similarity=0.320 Sum_probs=84.6
Q ss_pred CcceEEEEEeeccCCCcEEEEE--eCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec---CCeEE
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIG--CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEII 206 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~---dg~i~ 206 (839)
.++|.+++|+| +++.+|+. ..++.|.+||++ ++.+..+.... ...+.+ +|+|.+|+.|+. .|.|.
T Consensus 59 ~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~---~n~i~w---sP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 59 EGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQP---RNTISW---SPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeecCCC---ceEEEE---CCCCCEEEEEEccCCCcEEE
Confidence 45799999999 99887654 456799999996 66666665332 223444 699999999864 36799
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcE
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------DRSA 280 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------d~~i 280 (839)
+||.+ ..+.+.... | ..+..++|+|+|++|+++.. |..+
T Consensus 129 ~wd~~---------------------------------~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~ 173 (194)
T PF08662_consen 129 FWDVR---------------------------------KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGF 173 (194)
T ss_pred EEECC---------------------------------CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccE
Confidence 99998 566665543 3 34789999999999999864 7889
Q ss_pred EEEEcccC
Q 003208 281 RIWEVRAE 288 (839)
Q Consensus 281 ~iwd~~~~ 288 (839)
+||+....
T Consensus 174 ~Iw~~~G~ 181 (194)
T PF08662_consen 174 KIWSFQGR 181 (194)
T ss_pred EEEEecCe
Confidence 99998754
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.1e-06 Score=92.22 Aligned_cols=497 Identities=12% Similarity=0.079 Sum_probs=264.6
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe---------------eeeEEeeecCceEEeEEecccccccC
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---------------LIRPFQVFHGIRLHGISCNFINCTEG 81 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~---------------~~~~~~~~~~~~v~~i~~~~~~~~~~ 81 (839)
....|+++. .. ..|+++|. ||.++|-.+.+.. .-+++.+|.. .|.-+.|+
T Consensus 15 vkL~c~~WN--ke----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWN------- 80 (1189)
T KOG2041|consen 15 VKLHCAEWN--KE----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWN------- 80 (1189)
T ss_pred ceEEEEEEc--cc----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEec-------
Confidence 456799999 66 67888877 9999999876421 1234455554 68888888
Q ss_pred CCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEE
Q 003208 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (839)
Q Consensus 82 ~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~ 160 (839)
... ..++++. +|.|.||-+-.++ +-..-.-.....-|.+++|+. +|..++....||.|.
T Consensus 81 e~~----QKLTtSDt~GlIiVWmlykgs-------------W~EEMiNnRnKSvV~SmsWn~---dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 81 ENN----QKLTTSDTSGLIIVWMLYKGS-------------WCEEMINNRNKSVVVSMSWNL---DGTKICIVYEDGAVI 140 (1189)
T ss_pred ccc----ccccccCCCceEEEEeeeccc-------------HHHHHhhCcCccEEEEEEEcC---CCcEEEEEEccCCEE
Confidence 333 5677765 7999999887543 211112223456789999999 999999999999888
Q ss_pred EEecCCCceEE-EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEe
Q 003208 161 VWDISNSSIIL-EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (839)
Q Consensus 161 vwd~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (839)
|=.+...+... .+++.. +..+.+ ++|...++.+-..|.+.++|-+.+-........
T Consensus 141 VGsvdGNRIwgKeLkg~~---l~hv~w---s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c----------------- 197 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQL---LAHVLW---SEDLEQALFKKANGETHLYDNQGNFERKLEKDC----------------- 197 (1189)
T ss_pred EEeeccceecchhcchhe---ccceee---cccHHHHHhhhcCCcEEEecccccHHHhhhhce-----------------
Confidence 76664332211 112111 111121 577777777878899999997621111000000
Q ss_pred ecccccceeeEEEecCCCCeEEEEE--------cCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccce
Q 003208 240 QDQQHTAVNLFRLVGHEGSIFRIEW--------SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (839)
Q Consensus 240 ~~~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 311 (839)
.......+......|..+.| -|+...|+.|-..|.+.+-.-.+...+ .+....-.+
T Consensus 198 -----~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-----------vv~dtgm~~ 261 (1189)
T KOG2041|consen 198 -----EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP-----------VVVDTGMKI 261 (1189)
T ss_pred -----EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC-----------eEEecccEe
Confidence 00000011111122444554 357789999999998887655443321 233333567
Q ss_pred EEeEEC--CCEEEEEeCC---------CeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc
Q 003208 312 WDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 312 ~~~~~~--~~~l~s~~~d---------g~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~ 380 (839)
..+.|+ |..++.+|.+ +.|..+..-|..+.+++.... .|++++|-..|-.++. ..|+.|.+=+++..
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-~It~lsWEg~gLriA~-AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-CITGLSWEGTGLRIAI-AVDSFIYFANIRPE 339 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-eeeeeEEcCCceEEEE-EecceEEEEeeccc
Confidence 777887 6777777754 467888888888899988777 6999999777655554 34778877666432
Q ss_pred CccCc-CCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEE-eccceEEEEEecCCCCceeEEE
Q 003208 381 LPGSL-ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKI 458 (839)
Q Consensus 381 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~ 458 (839)
..-.. +....-+-.......+.+...+....... -..-....++++..+-.++.. ..+|.+..++-.......+...
T Consensus 340 ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~-vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~ 418 (1189)
T KOG2041|consen 340 YKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKT-VKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQ 418 (1189)
T ss_pred ceEEEeeeEEEEEEccCCCcceEEEEEecccChhh-hhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEe
Confidence 11000 00000000000011111111110000000 001123456667665444433 2344443331111111111111
Q ss_pred eeecCCCce--EEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcc-----eee----------------eE
Q 003208 459 LQVSEGMPI--ICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL-----SFT----------------FT 515 (839)
Q Consensus 459 ~~~~~~~~v--~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~-----~~~----------------~~ 515 (839)
+-...+.++ ...++. +.+..-.+..+++++.+ .+.+|.+...+..... ... +.
T Consensus 419 LCNSIGT~lD~kytdir---P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ 494 (1189)
T KOG2041|consen 419 LCNSIGTSLDYKYTDIR---PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLE 494 (1189)
T ss_pred eecccCCcCCCCcceee---eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceee
Confidence 110000000 000111 11222233566677765 6788887432211000 000 00
Q ss_pred eeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEE
Q 003208 516 WSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595 (839)
Q Consensus 516 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 595 (839)
............+++.....++|..+-..|.|.-+.+.+.... ..+ .-...|..++..-+...|
T Consensus 495 ys~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~--------------n~y--~~n~~~y~~~lNCnstRl 558 (1189)
T KOG2041|consen 495 YSTKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVVLT--------------NSY--PVNPSIYSIKLNCNSTRL 558 (1189)
T ss_pred ccceeeccCCCcceeeeecceEEEEEeccCceEEEEecceeee--------------ecc--ccCchheeEeeccCcchh
Confidence 0000011112233445567789999999999999988865321 111 124457788888888899
Q ss_pred EEecCCccEEEEecc
Q 003208 596 FCGDLRGNLVLFPLL 610 (839)
Q Consensus 596 a~gs~dg~i~iw~~~ 610 (839)
|.-+.-|.+.+.|+.
T Consensus 559 AiId~~gv~tf~dLd 573 (1189)
T KOG2041|consen 559 AIIDLVGVVTFQDLD 573 (1189)
T ss_pred hhhhhhceeeeeecc
Confidence 999989999888887
No 250
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=9.6e-08 Score=103.88 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=137.4
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE---cCcEEEEEEeeccCCCCCCCCCcccc
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCV 120 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~iw~~~~~~~~~~~~~~~~~~ 120 (839)
..|.+||... .....+..+. ..+...+|+ |||+ .++.++ +...|.+|++..+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~-~~v~~p~wS-------pDg~---~la~~s~~~~~~~l~~~dl~~g~------------ 239 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSA-EPILSPAWS-------PDGK---KLAYVSFERGRSAIYVQDLATGQ------------ 239 (433)
T ss_pred EEEEEECCCC-CCceEeecCC-CccccccCC-------CCCC---EEEEEecCCCCcEEEEEECCCCC------------
Confidence 3689999754 4344444333 358888999 8984 333343 23579999987533
Q ss_pred ceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
.+.+. .+.+...+.+|+| +++.|+ +.+.++ .|.+||+.+++... +.... .......| ++++..|+
T Consensus 240 -~~~l~---~~~g~~~~~~~Sp---DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~-~~~~~~~~---spDG~~l~ 307 (433)
T PRK04922 240 -RELVA---SFRGINGAPSFSP---DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF-GIDTEPTW---APDGKSIY 307 (433)
T ss_pred -EEEec---cCCCCccCceECC---CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEEE
Confidence 22232 2334455789999 998775 445555 59999998876433 32221 11223343 68888777
Q ss_pred Eee-cCCe--EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEE
Q 003208 198 SGT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (839)
Q Consensus 198 sg~-~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 274 (839)
..+ .+|. |+++++. .++ ...+..+.......+|+|+|++|+..
T Consensus 308 f~sd~~g~~~iy~~dl~---------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 308 FTSDRGGRPQIYRVAAS---------------------------------GGS-AERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCceEEEEECC---------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEEE
Confidence 655 4555 4444544 222 11222223345578999999998876
Q ss_pred eCCC---cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCceEEEeecc
Q 003208 275 SDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEH 346 (839)
Q Consensus 275 s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~h 346 (839)
+.++ .|.+||+.++.. + .+. +........|+ +++++..+.+ +.+.+++.++.....+..+
T Consensus 354 ~~~~~~~~I~v~d~~~g~~------~-----~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSV------R-----TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred ECCCCceeEEEEECCCCCe------E-----ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence 5443 699999877654 1 111 22233445677 5666655543 4577788877777766655
Q ss_pred cCCceEEEEEcc
Q 003208 347 IGRGIWRCLYDS 358 (839)
Q Consensus 347 ~~~~i~~~~~~~ 358 (839)
.+ .+...+|+|
T Consensus 422 ~g-~~~~p~wsp 432 (433)
T PRK04922 422 DG-EVREPAWSP 432 (433)
T ss_pred CC-CCCCCccCC
Confidence 55 366667765
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.98 E-value=2.5e-06 Score=87.09 Aligned_cols=268 Identities=12% Similarity=0.032 Sum_probs=162.7
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE---------cCcEEEEEEeeccCCCCCCC
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---------GEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~---------~~~~i~iw~~~~~~~~~~~~ 114 (839)
+.|.+.|.++++.+.++..... .+.+ ++ |||+ ..+++.. .+..|.+||..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~s-------pDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t-------- 86 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VA-------SDGS--FFAHASTVYSRIARGKRTDYVEVIDPQT-------- 86 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-EC-------CCCC--EEEEEeccccccccCCCCCEEEEEECcc--------
Confidence 7999999999999999997543 4555 88 8886 2455556 578999999987
Q ss_pred CCccccceeeeEeccCC-------CcceEEEEEeeccCCCcEEEEEe-C-CCcEEEEecCCCceEEEEecCCceeEEEEe
Q 003208 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGC-S-DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~las~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~ 185 (839)
++.+..+.-- ...-..++++| ++++|+... . ++.|.+.|+.+++.+.++..+....+|..
T Consensus 87 -------~~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t- 155 (352)
T TIGR02658 87 -------HLPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT- 155 (352)
T ss_pred -------CcEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-
Confidence 3444444321 11234688899 999888765 3 78999999999999999887665445442
Q ss_pred eccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEE-EE
Q 003208 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-EW 264 (839)
Q Consensus 186 ~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~ 264 (839)
+.+... +-+.||......+.... +... ...+ .+.+-...+..= .|
T Consensus 156 ----~e~~~~--~~~~Dg~~~~v~~d~~g---------------------~~~~-----~~~~--vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 156 ----ANDTFF--MHCRDGSLAKVGYGTKG---------------------NPKI-----KPTE--VFHPEDEYLINHPAY 201 (352)
T ss_pred ----cCCccE--EEeecCceEEEEecCCC---------------------ceEE-----eeee--eecCCccccccCCce
Confidence 222222 23345555544443100 0000 0000 011100111100 34
Q ss_pred cC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe--eccccceEEeEEC--CCEEEEEe----------CCCe
Q 003208 265 SS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT--DSFIITAG----------EDCT 329 (839)
Q Consensus 265 ~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~--~~~l~s~~----------~dg~ 329 (839)
.+ ++++++.... |+|.+-|+.............+..... .-....+.-++++ ++.++... ..+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 55 8888877777 999999976543310000110100000 0122333347787 45655532 2257
Q ss_pred EEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEEe-CCCcEEEEecCC
Q 003208 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (839)
Q Consensus 330 i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~-~dg~i~iw~~~~ 379 (839)
|.++|. +++.+..+..-. .++.++++||++ +|++.. .++.|.++|...
T Consensus 281 V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 999999 778888776533 589999999999 777666 578899999854
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3e-07 Score=100.20 Aligned_cols=230 Identities=12% Similarity=0.063 Sum_probs=136.9
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE---cCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.|.++|.. |.....+..+.. .+...+|+ |||+ .++.++ ++..|.+|++..+.
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~-~v~~p~wS-------pDG~---~lay~s~~~g~~~i~~~dl~~g~------------- 237 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSS-LVLTPRFS-------PNRQ---EITYMSYANGRPRVYLLDLETGQ------------- 237 (435)
T ss_pred EEEEECCC-CCCcEEEecCCC-CeEeeEEC-------CCCC---EEEEEEecCCCCEEEEEECCCCc-------------
Confidence 78899975 444444554433 68999999 9984 333333 35789999987533
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCc--EEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
.+ .+..+.+.+.+.+|+| +++.|+ +.+.++. |.+||+.++.... +.... .......+ +|++..|+.
T Consensus 238 ~~---~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~-~~~~~~~~---spDG~~i~f 306 (435)
T PRK05137 238 RE---LVGNFPGMTFAPRFSP---DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP-AIDTSPSY---SPDGSQIVF 306 (435)
T ss_pred EE---EeecCCCcccCcEECC---CCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-CccCceeE---cCCCCEEEE
Confidence 22 2334556778899999 998765 5555554 7777887776533 32222 12223333 688888776
Q ss_pred eec-CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 199 GTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 199 g~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
.+. +| .|+++|+. ... ...+..+.+.+....|+|+|++|+..+
T Consensus 307 ~s~~~g~~~Iy~~d~~---------------------------------g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 307 ESDRSGSPQLYVMNAD---------------------------------GSN-PRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EECCCCCCeEEEEECC---------------------------------CCC-eEEeecCCCcccCeEECCCCCEEEEEE
Confidence 653 33 56677765 222 223333455667788999999998776
Q ss_pred CC---CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC------CeEEEEcCCCceEEEee
Q 003208 276 DD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSDGKQLKMIK 344 (839)
Q Consensus 276 ~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d------g~i~vw~~~~~~~~~~~ 344 (839)
.+ ..|.+||+..... + .+ .....+....|+ ++.|+..+.+ ..+.++++++.....+.
T Consensus 353 ~~~~~~~i~~~d~~~~~~------~-----~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGE------R-----IL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred cCCCceEEEEEECCCCce------E-----ec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 54 3577888755432 1 11 112235567787 4566544432 25777777665555554
Q ss_pred cccCCceEEEEEcc
Q 003208 345 EHIGRGIWRCLYDS 358 (839)
Q Consensus 345 ~h~~~~i~~~~~~~ 358 (839)
. .+ .+...+|+|
T Consensus 421 ~-~~-~~~~p~Wsp 432 (435)
T PRK05137 421 T-PG-DASDPAWSP 432 (435)
T ss_pred C-CC-CccCcccCC
Confidence 2 33 255556665
No 253
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=2.8e-08 Score=93.53 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=145.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-----eeeEEeeec-----------CceEEeEEeccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINC 78 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-----~~~~~~~~~-----------~~~v~~i~~~~~~~ 78 (839)
....||+|.|. .. |.||++|. +|.|.+|.-.... -...++.|+ ...|..|.|.
T Consensus 25 ead~ItaVefd--~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~---- 94 (460)
T COG5170 25 EADKITAVEFD--ET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF---- 94 (460)
T ss_pred ccceeeEEEec--cc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee----
Confidence 34569999999 54 78999999 8999999854322 112233332 2357778876
Q ss_pred ccCCCccceeeEEEEEcCcEEEEEEeeccCCC-------CCCC---------CCc-----------cccceeeeEec-cC
Q 003208 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSP-------NSQY---------QPE-----------TCVNLSLVQSL-PR 130 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~-------~~~~---------~~~-----------~~~~~~~~~~~-~~ 130 (839)
.++++ ..++++..|++|++|.+...... ...| ++. ..+..++.+.+ ..
T Consensus 95 ---~~t~r-~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 95 ---DDTGR-NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred ---cCCCc-ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 33321 26777788999999998754210 0000 000 00011222223 57
Q ss_pred CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce---EEEEecCC----ceeEEEEeeccCCccceEEEEeecCC
Q 003208 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~---~~~~~~~~----~~~~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
|.-.|.++.|+. +...++++ .|=.|.+|+++-... +..++.+. .-++.+..|+ +.....+.-.+..|
T Consensus 171 H~yhiNSiS~Ns---D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFh--p~~cn~fmYSsSkG 244 (460)
T COG5170 171 HPYHINSISFNS---DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFH--PEMCNVFMYSSSKG 244 (460)
T ss_pred ceeEeeeeeecC---chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccC--HhHcceEEEecCCC
Confidence 888899999988 88888776 477899999864322 22333322 2334555554 23345666777889
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iw 283 (839)
.|++-|++. ..+++...++......+....-+.+-...|..+.|+++|+++++-+. -+|++|
T Consensus 245 ~Ikl~DlRq-----------------~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiw 306 (460)
T COG5170 245 EIKLNDLRQ-----------------SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIW 306 (460)
T ss_pred cEEehhhhh-----------------hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEE
Confidence 999999982 12223333333222222233334455678899999999999988765 689999
Q ss_pred EcccCcc
Q 003208 284 EVRAEYW 290 (839)
Q Consensus 284 d~~~~~~ 290 (839)
|.+..+.
T Consensus 307 Dvnm~k~ 313 (460)
T COG5170 307 DVNMAKN 313 (460)
T ss_pred ecccccC
Confidence 9987654
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=5.2e-07 Score=96.79 Aligned_cols=260 Identities=9% Similarity=0.039 Sum_probs=150.2
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEe-EEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+.+++.+.++.|..+|.++|+++.+..... .+.+ ..+ .++ .+++...++.+..||.+++.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~p~v--------~~~----~v~v~~~~g~l~a~d~~tG~----- 166 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLSPPLV--------ANG----LVVVRTNDGRLTALDAATGE----- 166 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc--eeecCCEE--------ECC----EEEEECCCCeEEEEEcCCCc-----
Confidence 344444448999999999999988766422 2221 111 122 66777778999999987643
Q ss_pred CCCccccceeeeEeccCCCcceEEEE--EeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC--Cce-eEEEEe-e-
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVC--FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP--ERC-LLYSMK-L- 186 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~--~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~--~~~-~~~s~~-~- 186 (839)
.+.........+ .+. -+|.- .+..++.+..++.+..+|..+++.+.+.... ... ....+. .
T Consensus 167 ----------~~W~~~~~~~~~-~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 167 ----------RLWTYSRVTPAL-TLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD 234 (377)
T ss_pred ----------eeeEEccCCCce-eecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC
Confidence 222222111111 000 01100 2246777888899999999998876543211 100 000000 0
Q ss_pred ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC
Q 003208 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (839)
Q Consensus 187 ~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 266 (839)
......+..++.++.+|.++.||.. +++.+-.... ....... .
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~---------------------------------tG~~~W~~~~--~~~~~p~--~ 277 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLR---------------------------------SGRVLWKRDA--SSYQGPA--V 277 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECC---------------------------------CCcEEEeecc--CCccCce--E
Confidence 0000134577778889999999987 3333322221 1111111 2
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccc-cceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEee
Q 003208 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 267 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
.+..++.++.||.+..+|..+++.. - ...... .........++.+++++.+|.++++|. +|+.+.++.
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~-----W-----~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSEL-----W-----KNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEE-----E-----ccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 4667888889999999999877541 0 110101 112222334789999999999999999 899998887
Q ss_pred cccCCceEE-EEEccCCCEEEEEeCCCcEEEE
Q 003208 345 EHIGRGIWR-CLYDSLSSLLVTAGFDSAIKVH 375 (839)
Q Consensus 345 ~h~~~~i~~-~~~~~~~~~l~t~~~dg~i~iw 375 (839)
.+.. ++.. .++. + ..|+.++.||.|..|
T Consensus 348 ~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 348 TDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 6654 2332 2332 3 358889999998775
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=7.3e-09 Score=118.78 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=138.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
+...|.++.-+ |. ..+-++|+ ||.|++|.+..++.+..++.....+|+.+.|+ ..|+ ..-++-
T Consensus 2207 ~v~~v~r~~sH--p~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-------~qGn---k~~i~d 2270 (2439)
T KOG1064|consen 2207 PVENVRRMTSH--PS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-------HQGN---KFGIVD 2270 (2439)
T ss_pred ccCceeeecCC--CC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-------ccCC---ceeeec
Confidence 33446666666 65 45556655 99999999999999888886655789999998 6664 555666
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe---CCCcEEEEecCCC---c
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNS---S 168 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~---~d~~i~vwd~~~~---~ 168 (839)
+||.+.+|... .++....+.|.....++.|.. ..+++++ .++.+.+||..-. .
T Consensus 2271 ~dg~l~l~q~~----------------pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2271 GDGDLSLWQAS----------------PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred cCCceeecccC----------------CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccc
Confidence 89999999987 245566778998889999864 5677764 4678999997532 2
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
.+.+ .|... +..+.+ .|...++++|+.+|.|++||++ ..+.
T Consensus 2330 ~v~~--~H~~g-aT~l~~---~P~~qllisggr~G~v~l~D~r---------------------------------qrql 2370 (2439)
T KOG1064|consen 2330 LVHT--CHDGG-ATVLAY---APKHQLLISGGRKGEVCLFDIR---------------------------------QRQL 2370 (2439)
T ss_pred eeee--ecCCC-ceEEEE---cCcceEEEecCCcCcEEEeehH---------------------------------HHHH
Confidence 2332 22221 223333 4888999999999999999998 5666
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
++.++. +. ...++++++..|.++||++.....
T Consensus 2371 ~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2371 RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred HHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 655543 44 567899999999999999988654
No 256
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=2.7e-07 Score=99.99 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=134.1
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCcccc
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCV 120 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~ 120 (839)
..|.++|.. |.....+..+. ..+...+|+ |||+ .++.++. ...|.+||+..+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~-~~v~~p~wS-------PDG~---~la~~s~~~~~~~I~~~dl~~g~------------ 231 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP-EPIISPAWS-------PDGT---KLAYVSFESKKPVVYVHDLATGR------------ 231 (427)
T ss_pred cEEEEECCC-CCCceEeccCC-CCcccceEc-------CCCC---EEEEEEccCCCcEEEEEECCCCC------------
Confidence 467777864 44444444333 368889999 9984 3333332 3469999987543
Q ss_pred ceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCcEEEEec--CCCceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
...+.. ..+.+.+.+|+| +++.|+ +.+.++...||.+ ..+. ...+..+. ....+..+ ++++..|+
T Consensus 232 -~~~l~~---~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~w---SpDG~~l~ 299 (427)
T PRK02889 232 -RRVVAN---FKGSNSAPAWSP---DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFF---SPDGRSIY 299 (427)
T ss_pred -EEEeec---CCCCccceEECC---CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEE---cCCCCEEE
Confidence 223332 334566889999 998776 5567777666654 3333 33333222 11223333 68888777
Q ss_pred Eee-cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 003208 198 SGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 198 sg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 276 (839)
..+ .+|...+|.+... ... ...+..+........|+|+|++|+..+.
T Consensus 300 f~s~~~g~~~Iy~~~~~-------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 300 FTSDRGGAPQIYRMPAS-------------------------------GGA-AQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEecCCCCcEEEEEECC-------------------------------CCc-eEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 544 4567777776510 111 1112112233446789999999987776
Q ss_pred CC---cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC-e--EEEEcCCCceEEEeecccC
Q 003208 277 DR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC-T--CRVWGSDGKQLKMIKEHIG 348 (839)
Q Consensus 277 d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg-~--i~vw~~~~~~~~~~~~h~~ 348 (839)
++ .|.+||+.++.. + .+.. ........|+ +..|+..+.++ . +.+.+.+++....+..+.+
T Consensus 348 ~~g~~~I~v~d~~~g~~------~-----~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 348 VGGAFKLYVQDLATGQV------T-----ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred cCCcEEEEEEECCCCCe------E-----EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence 54 699999987654 1 1111 1223456777 45666555433 2 4444556766666655555
Q ss_pred CceEEEEEcc
Q 003208 349 RGIWRCLYDS 358 (839)
Q Consensus 349 ~~i~~~~~~~ 358 (839)
.+...+|+|
T Consensus 416 -~~~~p~wsp 424 (427)
T PRK02889 416 -DVREPSWGP 424 (427)
T ss_pred -CCCCCccCC
Confidence 356667766
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.90 E-value=5.9e-07 Score=84.51 Aligned_cols=112 Identities=17% Similarity=0.267 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC
Q 003208 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 259 V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~ 335 (839)
-.++.|++.+..+++.-.+|.+.+-+...... +.. ...+.|.-+.|.++|+ ++.+++||.|+.+..||+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e~v--q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVL------EKV--QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeee------eec--ccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 45788999999999999999998665544322 222 2678899999999998 789999999999999999
Q ss_pred --CCceEEE-eecccCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 003208 336 --DGKQLKM-IKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 336 --~~~~~~~-~~~h~~~~i~~~~~~~-~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.++.+.. .+.|.. +|.+|.-+| ...+++||+.|-.|++||.+.
T Consensus 196 R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3444443 556776 699988775 467999999999999999864
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=4e-06 Score=86.16 Aligned_cols=340 Identities=11% Similarity=0.130 Sum_probs=190.4
Q ss_pred eeEEEECCCCee-eeEEeee-cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccce
Q 003208 45 QVLLYDLEAGTL-IRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122 (839)
Q Consensus 45 ~v~iwd~~~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 122 (839)
.+.+|+....+. ..++... ...+....+++ ++| .+++.+.+..++|++.....
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S-------~~G----~lfA~~~~~~v~i~~~~~~~-------------- 66 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYS-------NNG----RLFAYSDNQVVKVFEIATLK-------------- 66 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEc-------CCC----cEEEEEcCCeEEEEEccCCc--------------
Confidence 466777543222 2223221 12234556666 777 89999999999999987532
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEE-----eCC-----CcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-----CSD-----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~-----~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
.+.+...- .+.++.|+| .+.+|.+= ..+ ..+++|+++++.....++..... .|...| +.|
T Consensus 67 -~~lt~~~~--~~~~L~fSP---~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~-~W~~qf---s~d 136 (566)
T KOG2315|consen 67 -VVLCVELK--KTYDLLFSP---KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN-GWVPQF---SID 136 (566)
T ss_pred -EEEEeccc--eeeeeeecc---cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc-Cccccc---ccc
Confidence 22222211 588999999 88888652 112 34779999985554444433221 144444 333
Q ss_pred ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC--CE
Q 003208 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SK 270 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~ 270 (839)
. .+++=-..+.+.+|+... .....+.+ |...|..+.++|.+ ..
T Consensus 137 E-sl~arlv~nev~f~~~~~--------------------------------f~~~~~kl--~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 137 E-SLAARLVSNEVQFYDLGS--------------------------------FKTIQHKL--SVSGITMLSLSPGPEPPF 181 (566)
T ss_pred h-hhhhhhhcceEEEEecCC--------------------------------ccceeeee--eccceeeEEecCCCCCce
Confidence 3 333333457899999871 12223333 56788888888863 34
Q ss_pred EEE-----EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--C-CEEE--EEeCC---------CeEE
Q 003208 271 LVS-----VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D-SFII--TAGED---------CTCR 331 (839)
Q Consensus 271 l~s-----~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~--s~~~d---------g~i~ 331 (839)
+++ .+.-+.|+||....... .+.+....+.. ..-..+.|. + .+|+ +...| .+++
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~-----~~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQ-----HQPVANKSFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccc-----cchhhhccccc--cceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 444 35567899998873322 11111001111 111234454 2 2222 22222 4677
Q ss_pred EEcCCCceEEEeecccCCceEEEEEccCCCEEEE--EeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCc
Q 003208 332 VWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVT--AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (839)
Q Consensus 332 vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (839)
+.+++|.....--...+ +|.++.|+|+++-+++ |-.=.++.+||++...+..+. .
T Consensus 255 ll~t~g~s~~V~L~k~G-PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~--------------------e-- 311 (566)
T KOG2315|consen 255 LLATQGESVSVPLLKEG-PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP--------------------E-- 311 (566)
T ss_pred EEEecCceEEEecCCCC-CceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC--------------------C--
Confidence 77775443332222345 8999999999964433 445678889988764332211 1
Q ss_pred cceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEE
Q 003208 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (839)
Q Consensus 410 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 489 (839)
++=.++-|+|.|.+++.+.-
T Consensus 312 ----------gpRN~~~fnp~g~ii~lAGF-------------------------------------------------- 331 (566)
T KOG2315|consen 312 ----------GPRNTAFFNPHGNIILLAGF-------------------------------------------------- 331 (566)
T ss_pred ----------CCccceEECCCCCEEEEeec--------------------------------------------------
Confidence 12345556666554443311
Q ss_pred eCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCC------CCcEEEeeecCC
Q 003208 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADP------KGRLKLWQLCDP 555 (839)
Q Consensus 490 g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~~wd~~~~ 555 (839)
|.-.|.|.+||+.+.++..+... .-.+.+.++|||++++|+.. |..++||++...
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a-----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKA-----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCCceEEEeccchhhcccccc-----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 22347888999877543322221 11233568999999998765 467899998765
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=1.5e-06 Score=88.01 Aligned_cols=274 Identities=14% Similarity=0.182 Sum_probs=170.5
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-C---------------CeeEEEECCCCeeeeEEeeecCce--EE-eEEeccccc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-G---------------SQVLLYDLEAGTLIRPFQVFHGIR--LH-GISCNFINC 78 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~---------------~~v~iwd~~~~~~~~~~~~~~~~~--v~-~i~~~~~~~ 78 (839)
..|.-+.|+ |. +.||.+=+ . +.+.|||..+|.++..+..... + .. -+.|+
T Consensus 72 ~~V~~~~fS--P~----~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s---- 140 (561)
T COG5354 72 PDVKYLDFS--PN----EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFS---- 140 (561)
T ss_pred CCceecccC--cc----cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeee----
Confidence 458889999 98 89998843 2 2489999999999998886432 2 11 34555
Q ss_pred ccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE-----E
Q 003208 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-----G 153 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las-----~ 153 (839)
-+. .+++=--...++|+++ ++... ..+.+.++ ...|+...|+|.. +...||. .
T Consensus 141 ---~~D----~y~ARvv~~sl~i~e~-t~n~~-----------~~p~~~lr--~~gi~dFsisP~~-n~~~la~~tPEk~ 198 (561)
T COG5354 141 ---IDD----KYVARVVGSSLYIHEI-TDNIE-----------EHPFKNLR--PVGILDFSISPEG-NHDELAYWTPEKL 198 (561)
T ss_pred ---ecc----hhhhhhccCeEEEEec-CCccc-----------cCchhhcc--ccceeeEEecCCC-CCceEEEEccccC
Confidence 332 3444335678999997 32200 11122222 3568889999822 3344553 4
Q ss_pred eCCCcEEEEecCCCceEEEEe--cCCceeEEEEeeccCCccceEEEEe----e-------cCCeEEEEEeeccccccCCC
Q 003208 154 CSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASG----T-------IYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 154 ~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~l~sg----~-------~dg~i~vw~~~~~~~~~~~~ 220 (839)
..++.+++|.+.....+.+.. ....+ .+.+ .+.+.+|+.- . ...++++++++
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~---qLkW---~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--------- 263 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLFKVSGV---QLKW---QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--------- 263 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeEeeccc---EEEE---ecCCceEEEEEEEeeecccceeccceEEEEeec---------
Confidence 568899999998766654432 11121 1222 2334433321 1 11456666665
Q ss_pred CCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcccCccCCCCCcee
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEE 298 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~ 298 (839)
..-+.....-.++|...+|.|.++.+++++ .+-.+.++|++.. .
T Consensus 264 -------------------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l-------- 309 (561)
T COG5354 264 -------------------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L-------- 309 (561)
T ss_pred -------------------------ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-e--------
Confidence 222222335679999999999988776654 7788999999876 2
Q ss_pred eeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCce--EEEeecccCCceEEEEEccCCCEEEEEe----
Q 003208 299 VGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAG---- 367 (839)
Q Consensus 299 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~--~~~~~~h~~~~i~~~~~~~~~~~l~t~~---- 367 (839)
........=..+-|+ .++++.++.| |.+-+|+..++. +..+.+.+ ..-+.|+|+++++.+..
T Consensus 310 ----~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 310 ----RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEeeccCCceEEEecCCCcc
Confidence 222333333445566 5788887776 789999995543 33454443 45578999999887764
Q ss_pred --CCCcEEEEecCCc
Q 003208 368 --FDSAIKVHQFQAF 380 (839)
Q Consensus 368 --~dg~i~iw~~~~~ 380 (839)
.|..+++|++.+.
T Consensus 383 ~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 383 LRVDNSIKLWDVYGA 397 (561)
T ss_pred cccCcceEEEEecCc
Confidence 4788999999664
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=1.3e-05 Score=80.57 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=139.9
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCC-CccccceeeeEeccCCCcceEEEE-EeeccCCCcEEEEEeCCCcE
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ-PETCVNLSLVQSLPRLSHWVFDVC-FLKVCNGNRSLAIGCSDNSI 159 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~I~~~~-~~~~~~~~~~las~~~d~~i 159 (839)
.|| ..++....|.|.++|.++.....-... | ............+..-+. |++ .+|+++|..| .|..
T Consensus 276 sDG----krIvFq~~GdIylydP~td~lekldI~lp-----l~rk~k~~k~~~pskyledfa~--~~Gd~ia~VS-RGka 343 (668)
T COG4946 276 SDG----KRIVFQNAGDIYLYDPETDSLEKLDIGLP-----LDRKKKQPKFVNPSKYLEDFAV--VNGDYIALVS-RGKA 343 (668)
T ss_pred CCC----cEEEEecCCcEEEeCCCcCcceeeecCCc-----cccccccccccCHHHhhhhhcc--CCCcEEEEEe-cCcE
Confidence 677 678888889999999887552111100 0 000000111111111122 333 2688888877 4677
Q ss_pred EEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCC-eEEEEEeeccccccCCCCCCCccCCCCCCCceeeE
Q 003208 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (839)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (839)
.|.+...+-.++.-+ .. .+-|.-. ..++.-++.|+.|| .+-++|..
T Consensus 344 Fi~~~~~~~~iqv~~-~~-~VrY~r~----~~~~e~~vigt~dgD~l~iyd~~--------------------------- 390 (668)
T COG4946 344 FIMRPWDGYSIQVGK-KG-GVRYRRI----QVDPEGDVIGTNDGDKLGIYDKD--------------------------- 390 (668)
T ss_pred EEECCCCCeeEEcCC-CC-ceEEEEE----ccCCcceEEeccCCceEEEEecC---------------------------
Confidence 777766554443211 11 1222211 34555788899999 89999987
Q ss_pred eecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-
Q 003208 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (839)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 317 (839)
...+..+.+.-+.|.++..+|+|++++.+.....+.+.|+.++.. + ..-....+-|+...|+
T Consensus 391 -------~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~----~idkS~~~lItdf~~~~ 453 (668)
T COG4946 391 -------GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------R----LIDKSEYGLITDFDWHP 453 (668)
T ss_pred -------CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------e----EecccccceeEEEEEcC
Confidence 233445666778999999999999999999999999999998865 2 1333445668888888
Q ss_pred -CCEEEEEeCC----CeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEe
Q 003208 318 -DSFIITAGED----CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 318 -~~~l~s~~~d----g~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
..+++-+--+ ..|+++|+.+..+.......+ .=.+-+|.|++++|.--+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 3566655444 578999996655544444333 234668999999876544
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.86 E-value=6.4e-07 Score=92.57 Aligned_cols=198 Identities=12% Similarity=0.131 Sum_probs=136.6
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeee--cCceEEeEEecccccccCC---------Ccccee-eEEE-EEcCcEEE
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFINCTEGS---------VSTRVT-FEVA-LFGEKRVK 100 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~---------~~~~~~-~~l~-~~~~~~i~ 100 (839)
..|++... ||.++|||..++++...+.-- ....-.+..|.-. ....| .+.+.+ ..++ ....|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~-~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLS-ADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEE-eccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 45555555 899999999999887776531 1222344444311 00001 000001 2333 34578999
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCcee
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 180 (839)
+|+...+. ......-..|.+.|.++.++. +-..|.+++.|..+..|+...+..++....... .
T Consensus 84 ~ys~~~g~-------------it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~ 146 (541)
T KOG4547|consen 84 LYSVAGGE-------------ITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-L 146 (541)
T ss_pred EEEecCCe-------------EEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCC-c
Confidence 99987533 222233357999999999887 888999999999999999999888877764432 2
Q ss_pred EEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeE
Q 003208 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (839)
Q Consensus 181 ~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 260 (839)
..+++. ++|+..+++++ ++|.+||+. +.+.+..|.||.++|.
T Consensus 147 ~~sl~i---s~D~~~l~~as--~~ik~~~~~---------------------------------~kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 147 VSSLCI---SPDGKILLTAS--RQIKVLDIE---------------------------------TKEVVITFTGHGSPVR 188 (541)
T ss_pred cceEEE---cCCCCEEEecc--ceEEEEEcc---------------------------------CceEEEEecCCCcceE
Confidence 233433 58888999887 899999999 8899999999999999
Q ss_pred EEEEcCC-----CCEEEE-EeCCCcEEEEEcccC
Q 003208 261 RIEWSSC-----GSKLVS-VSDDRSARIWEVRAE 288 (839)
Q Consensus 261 ~l~~~~~-----~~~l~s-~s~d~~i~iwd~~~~ 288 (839)
+++|-.. |.++++ ...++-+.+|-....
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999765 566555 455667888877663
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.83 E-value=7.4e-07 Score=97.35 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=122.6
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCC---CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-Eeec
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~ 201 (839)
+.+..+...+...+|+| ++++||.+..+ ..|++||+.+++........ ....++.+ ++++..|+ +.+.
T Consensus 183 ~~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~---spDg~~l~~~~~~ 254 (417)
T TIGR02800 183 QTITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQREKVASFP--GMNGAPAF---SPDGSKLAVSLSK 254 (417)
T ss_pred EEeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--CCccceEE---CCCCCEEEEEECC
Confidence 33445666788999999 99999877643 47999999887554322211 11223343 57887665 4444
Q ss_pred CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC-C
Q 003208 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (839)
Q Consensus 202 dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~ 278 (839)
++ .|++|++. ... ...+..+........|+|++++|+..+.. +
T Consensus 255 ~~~~~i~~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 255 DGNPDIYVMDLD---------------------------------GKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred CCCccEEEEECC---------------------------------CCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 44 57777776 222 22333444455567899999988776643 3
Q ss_pred --cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC---eEEEEcCCCceEEEeecccCCce
Q 003208 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGI 351 (839)
Q Consensus 279 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~h~~~~i 351 (839)
.|.++|+.+.+. + .+..+...+....|+ +++++.++.++ .|.+||+.+.....+.... ..
T Consensus 301 ~~~iy~~d~~~~~~------~-----~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~ 367 (417)
T TIGR02800 301 SPQIYMMDADGGEV------R-----RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LD 367 (417)
T ss_pred CceEEEEECCCCCE------E-----EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CC
Confidence 577777765443 1 233334455667787 57777777665 7888998444444443322 23
Q ss_pred EEEEEccCCCEEEEEeCCC---cEEEEecCC
Q 003208 352 WRCLYDSLSSLLVTAGFDS---AIKVHQFQA 379 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~dg---~i~iw~~~~ 379 (839)
....|+|+++.|+....++ .+.+.+..+
T Consensus 368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 4568999999887777654 344444433
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=4.9e-07 Score=93.42 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=140.0
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEec------CCceeEEEEeec-------------cCCccceEEEEeecCCeEE
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHS------PERCLLYSMKLW-------------GDNLEALRIASGTIYNEII 206 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~------~~~~~~~s~~~~-------------~~~~~~~~l~sg~~dg~i~ 206 (839)
...++|....||.+|+||..+++....+.. ...+..|.+..- .-+.+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 667899999999999999998876655431 112223332110 0122344677799999999
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd 284 (839)
+|+.. .++....+. .|.+.|.++.++.+-..|.|++.|+.+..|+
T Consensus 84 ~ys~~---------------------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 84 LYSVA---------------------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred EEEec---------------------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 99998 455555554 7999999999999999999999999999999
Q ss_pred cccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccC--
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-- 359 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~-- 359 (839)
...... + .....-...+.++++++ ..+++++ +.|++||+ +++.+.++.+|.+ +|.++.|..+
T Consensus 131 ~~~~~~-----~-----~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 131 EKEKVI-----I-----RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLID 197 (541)
T ss_pred ccccee-----e-----eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecc
Confidence 988654 2 25556667788888884 4777775 68999999 8899999999999 8999999765
Q ss_pred ---CCEEE-EEeCCCcEEEEecCC
Q 003208 360 ---SSLLV-TAGFDSAIKVHQFQA 379 (839)
Q Consensus 360 ---~~~l~-t~~~dg~i~iw~~~~ 379 (839)
|.+++ +...+.-+.+|-...
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 55544 444566777887643
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.76 E-value=0.00013 Score=76.65 Aligned_cols=274 Identities=12% Similarity=0.138 Sum_probs=162.1
Q ss_pred CeeEEEEC--CCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc----CcEEEEEEeeccCCCCCCCCCc
Q 003208 44 SQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPE 117 (839)
Q Consensus 44 ~~v~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~----~~~i~iw~~~~~~~~~~~~~~~ 117 (839)
+.|.+|++ +++++...-.........-++++ |+++ .+.++.. ++.|..|++....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~-------~~~~---~LY~~~e~~~~~g~v~~~~i~~~~--------- 73 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS-------PDGR---RLYVVNEGSGDSGGVSSYRIDPDT--------- 73 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE--------TTSS---EEEEEETTSSTTTEEEEEEEETTT---------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE-------eCCC---EEEEEEccccCCCCEEEEEECCCc---------
Confidence 68888887 55654332222233457778888 7774 5666644 5799999998641
Q ss_pred cccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCC-CceEEE---Ee----c-----CCceeEEE
Q 003208 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISN-SSIILE---VH----S-----PERCLLYS 183 (839)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~-~~~~~~---~~----~-----~~~~~~~s 183 (839)
..++.+.........-..++++| ++.+|+++.. +|.|.++++.. +..... +. + ....-...
T Consensus 74 --g~L~~~~~~~~~g~~p~~i~~~~---~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 74 --GTLTLLNSVPSGGSSPCHIAVDP---DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp --TEEEEEEEEEESSSCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred --ceeEEeeeeccCCCCcEEEEEec---CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 01445555443334456688999 9998888764 89999999976 333222 11 0 11222334
Q ss_pred EeeccCCccceEEEEeec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEE
Q 003208 184 MKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFR 261 (839)
Q Consensus 184 ~~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~ 261 (839)
+.+ +|++.++++... ...|.+|++..... .......+. ........
T Consensus 149 v~~---~pdg~~v~v~dlG~D~v~~~~~~~~~~-----------------------------~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 149 VVF---SPDGRFVYVPDLGADRVYVYDIDDDTG-----------------------------KLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp EEE----TTSSEEEEEETTTTEEEEEEE-TTS------------------------------TEEEEEEEECSTTSSEEE
T ss_pred EEE---CCCCCEEEEEecCCCEEEEEEEeCCCc-----------------------------eEEEeeccccccCCCCcE
Confidence 444 688887777543 46899999872110 011122222 33456789
Q ss_pred EEEcCCCCEEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEee--cc--ccceEEeEEC--CCEEEEE-eCCCeEEEE
Q 003208 262 IEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLY--GH--NARVWDCCLT--DSFIITA-GEDCTCRVW 333 (839)
Q Consensus 262 l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h--~~~v~~~~~~--~~~l~s~-~~dg~i~vw 333 (839)
+.|+|++++++.. -.+++|.++++...... .+.+...... +. ......++++ +++|++. -..+.|.+|
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGS----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTE----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCc----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 9999999987665 45778999999832210 2222211111 11 1246678888 5665554 466789999
Q ss_pred cCC---Cc--eEEEeecccCCceEEEEEccCCCEEEEEeC-CCcEEEEecC
Q 003208 334 GSD---GK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (839)
Q Consensus 334 ~~~---~~--~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~-dg~i~iw~~~ 378 (839)
+++ ++ .+..+... +.....++++|+|++|+++.. ++.|.+|+++
T Consensus 273 ~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 982 32 22333322 324789999999999888874 6799999874
No 265
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=1.4e-05 Score=86.05 Aligned_cols=271 Identities=9% Similarity=-0.003 Sum_probs=147.9
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEE----------eEEecccccccCCCccceeeEEEEEcCcEEEEEEe
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLH----------GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFEL 104 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~----------~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~ 104 (839)
+++.+.+.++.|.-+|.++|+.+.+.+........ ++... ++ .+++...++.+.-+|.
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~----~v~v~~~~g~l~ald~ 137 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--------GG----KVYIGSEKGQVYALNA 137 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--------CC----EEEEEcCCCEEEEEEC
Confidence 44555455889999999999998877643211110 01111 22 5666667889999998
Q ss_pred eccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEE
Q 003208 105 NFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM 184 (839)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~ 184 (839)
++++ .+-..+.. +.+.+--.. .+..++.+..++.+..+|..+++.+.+............
T Consensus 138 ~tG~---------------~~W~~~~~-~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 138 EDGE---------------VAWQTKVA-GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCCC---------------CcccccCC-CceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 7643 22222211 122211111 234566677789999999999998877653311100000
Q ss_pred eeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC-CCeEEEE
Q 003208 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIE 263 (839)
Q Consensus 185 ~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~ 263 (839)
.......+..++.++.+|.+...|..+++.. |..... .+. ..+. .....+.
T Consensus 198 -~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~-----------------------W~~~~~-~~~---~~~~~~~~~~~~ 249 (394)
T PRK11138 198 -ESAPATAFGGAIVGGDNGRVSAVLMEQGQLI-----------------------WQQRIS-QPT---GATEIDRLVDVD 249 (394)
T ss_pred -CCCCEEECCEEEEEcCCCEEEEEEccCChhh-----------------------heeccc-cCC---CccchhcccccC
Confidence 0000011235666778899988888733321 110000 000 0000 0000111
Q ss_pred EcC--CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceE
Q 003208 264 WSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQL 340 (839)
Q Consensus 264 ~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~ 340 (839)
.+| .+..++.++.++.+..+|..+++.. .... ......+...++.++.++.+|.+..+|. +|+.+
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-----------W~~~-~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIV-----------WKRE-YGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEE-----------Eeec-CCCccCcEEECCEEEEEcCCCeEEEEECCCCcEE
Confidence 122 2456777888999999999887541 1111 1111223445788888999999999999 77766
Q ss_pred EEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 341 KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 341 ~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
............+..+ .+..|+.++.||.+.+.|.+.
T Consensus 318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 5443211111222222 245788889999999999743
No 266
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.75 E-value=0.00019 Score=75.54 Aligned_cols=284 Identities=15% Similarity=0.167 Sum_probs=161.5
Q ss_pred cCcccccc--CCCce--------eeeeeEEEEecCCCCCCCcceEEEee-----CCeeEEEECCC--Cee--eeEEeeec
Q 003208 4 KDLSEWRL--DVGQY--------LGEISALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEA--GTL--IRPFQVFH 64 (839)
Q Consensus 4 ~~i~~w~~--~~~~~--------~~~Vt~l~f~~~~~~~~~~~~l~~g~-----~~~v~iwd~~~--~~~--~~~~~~~~ 64 (839)
+.|.++++ .++.. ....+.|+++ |+ +++|++.. .+.|..|.+.. +++ +.+... .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~--~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~ 85 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS--PD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-G 85 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-S
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE--eC----CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-C
Confidence 56777777 33331 1224678888 88 77888765 25888888765 333 333332 3
Q ss_pred CceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEec----------cCCCc
Q 003208 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL----------PRLSH 133 (839)
Q Consensus 65 ~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~ 133 (839)
+.....++++ |+++ .++++ .+++.|.++++...... ......+ +.-..
T Consensus 86 g~~p~~i~~~-------~~g~---~l~vany~~g~v~v~~l~~~g~l-----------~~~~~~~~~~g~g~~~~rq~~~ 144 (345)
T PF10282_consen 86 GSSPCHIAVD-------PDGR---FLYVANYGGGSVSVFPLDDDGSL-----------GEVVQTVRHEGSGPNPDRQEGP 144 (345)
T ss_dssp SSCEEEEEEC-------TTSS---EEEEEETTTTEEEEEEECTTSEE-----------EEEEEEEESEEEESSTTTTSST
T ss_pred CCCcEEEEEe-------cCCC---EEEEEEccCCeEEEEEccCCccc-----------ceeeeecccCCCCCcccccccc
Confidence 4456778988 8874 44444 36899999999863200 1111111 11234
Q ss_pred ceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCCc--e--EEEEecCCceeEEEEeeccCCccceEEEE-eecCCeEEE
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSS--I--ILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIV 207 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~~--~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~dg~i~v 207 (839)
...++.++| +++++++... ...|.+|++.... . ...+..+..+--..+.| ++++.++.. .-.++.|.+
T Consensus 145 h~H~v~~~p---dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f---~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 145 HPHQVVFSP---DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF---SPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp CEEEEEE-T---TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEEE
T ss_pred cceeEEECC---CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE---cCCcCEEEEecCCCCcEEE
Confidence 578899999 9998877643 4579999997654 3 22333343333334555 477777655 455788999
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe----c--CCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----G--HEGSIFRIEWSSCGSKLVSVS-DDRSA 280 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--h~~~V~~l~~~~~~~~l~s~s-~d~~i 280 (839)
+++....- ..+.+.... + .......|+++|+|++|+++. ...+|
T Consensus 219 ~~~~~~~g-----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 219 FDYDPSDG-----------------------------SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp EEEETTTT-----------------------------EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred EeecccCC-----------------------------ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 99871110 111111111 1 123678899999999887765 56789
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEe-CCCeEEEEcC---CCceEEEeecccCCceEEE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKEHIGRGIWRC 354 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~---~~~~~~~~~~h~~~~i~~~ 354 (839)
.+|+++..... ++.+. .........+.++++ +++|+++. .++.|.+|++ +|.....-.........|+
T Consensus 270 ~vf~~d~~~g~----l~~~~--~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 270 SVFDLDPATGT----LTLVQ--TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp EEEEECTTTTT----EEEEE--EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred EEEEEecCCCc----eEEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 99999543211 34333 222223346788886 67777766 5678999876 3443333222222235566
Q ss_pred EE
Q 003208 355 LY 356 (839)
Q Consensus 355 ~~ 356 (839)
.|
T Consensus 344 ~f 345 (345)
T PF10282_consen 344 VF 345 (345)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.75 E-value=4.2e-06 Score=84.91 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=168.5
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
.-|+..+++| |. |++|++..-..|.+|....+..+..+.. . .|.-+.|+ |.+ .+|.+|..
T Consensus 32 ~~p~~~~~~S--P~----G~~l~~~~~~~V~~~~g~~~~~l~~~~~--~-~V~~~~fS-------P~~----kYL~tw~~ 91 (561)
T COG5354 32 NWPVAYVSES--PL----GTYLFSEHAAGVECWGGPSKAKLVRFRH--P-DVKYLDFS-------PNE----KYLVTWSR 91 (561)
T ss_pred Ccchhheeec--Cc----chheehhhccceEEccccchhheeeeec--C-CceecccC-------ccc----ceeeeecc
Confidence 3578899999 98 8999998877899999887776666653 3 48999999 777 67777642
Q ss_pred ----------------cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc--eE-EEEEeeccCCCcEEEEEeCCC
Q 003208 97 ----------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW--VF-DVCFLKVCNGNRSLAIGCSDN 157 (839)
Q Consensus 97 ----------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--I~-~~~~~~~~~~~~~las~~~d~ 157 (839)
..+.+||... +.++..+.+-..+ .. -+.|+. +..++|=- -..
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~s---------------g~iv~sf~~~~q~~~~Wp~~k~s~---~D~y~ARv-v~~ 152 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIAS---------------GMIVFSFNGISQPYLGWPVLKFSI---DDKYVARV-VGS 152 (561)
T ss_pred CCccChhhccCCccccCceeEEeccC---------------ceeEeeccccCCcccccceeeeee---cchhhhhh-ccC
Confidence 2478898875 4556666555544 33 567777 66666533 235
Q ss_pred cEEEEecCCCce----EEEEecCCceeEEEEeeccCCcc--ceEEEE-----eecCCeEEEEEeeccccccCCCCCCCcc
Q 003208 158 SIRVWDISNSSI----ILEVHSPERCLLYSMKLWGDNLE--ALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 158 ~i~vwd~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~--~~~l~s-----g~~dg~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
.+.|+++ +... ...++ ...-.-|++ +|. +..||. ++..+.+++|.+.
T Consensus 153 sl~i~e~-t~n~~~~p~~~lr-~~gi~dFsi-----sP~~n~~~la~~tPEk~~kpa~~~i~sIp--------------- 210 (561)
T COG5354 153 SLYIHEI-TDNIEEHPFKNLR-PVGILDFSI-----SPEGNHDELAYWTPEKLNKPAMVRILSIP--------------- 210 (561)
T ss_pred eEEEEec-CCccccCchhhcc-ccceeeEEe-----cCCCCCceEEEEccccCCCCcEEEEEEcc---------------
Confidence 6899997 3221 11121 111111221 222 222332 3445566666654
Q ss_pred CCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEEcccCccCCCCC
Q 003208 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-----------DDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-----------~d~~i~iwd~~~~~~~~~~~ 295 (839)
....+..-.-.+-.=..+.|++.|++|+.-- ....+.++++......
T Consensus 211 ------------------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~---- 268 (561)
T COG5354 211 ------------------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP---- 268 (561)
T ss_pred ------------------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc----
Confidence 2222222111122234678888888765431 1245677777754431
Q ss_pred ceeeeceEeeccccceEEeEEC--CC--EEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCC--
Q 003208 296 IEEVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-- 369 (839)
Q Consensus 296 ~~~~~~~~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d-- 369 (839)
......++|...+|. .+ -+++|-.+..+.++|+.+.....+.. . .=..+.|+|.+++++.+|.|
T Consensus 269 -------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe--~-~rNT~~fsp~~r~il~agF~nl 338 (561)
T COG5354 269 -------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE--Q-KRNTIFFSPHERYILFAGFDNL 338 (561)
T ss_pred -------eeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--c-ccccccccCcccEEEEecCCcc
Confidence 222567899999996 33 34556788999999998875544432 2 23568899999999998876
Q ss_pred -CcEEEEecCC
Q 003208 370 -SAIKVHQFQA 379 (839)
Q Consensus 370 -g~i~iw~~~~ 379 (839)
|.+-+|+..+
T Consensus 339 ~gni~i~~~~~ 349 (561)
T COG5354 339 QGNIEIFDPAG 349 (561)
T ss_pred ccceEEeccCC
Confidence 6788998854
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=3.8e-06 Score=85.95 Aligned_cols=282 Identities=15% Similarity=0.209 Sum_probs=170.9
Q ss_pred eeEEEEecCCCCCCCcceEEEee------------CCeeEEEECCCCeeeeEEeeecCceEE--eEEecccccccCCCcc
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGS------------GSQVLLYDLEAGTLIRPFQVFHGIRLH--GISCNFINCTEGSVST 85 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~------------~~~v~iwd~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~~~~~~~ 85 (839)
|.-+.|| |. -+||++-+ +..++|||+.+|.+.+.+...++..++ -..|| .|+
T Consensus 252 Vq~idfS--P~----EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-------~Dd- 317 (698)
T KOG2314|consen 252 VQFIDFS--PN----EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-------HDD- 317 (698)
T ss_pred ceeeecC--Cc----cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-------cCC-
Confidence 7788999 98 78999833 147999999999999999886543222 24566 676
Q ss_pred ceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-----CCcEE
Q 003208 86 RVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIR 160 (839)
Q Consensus 86 ~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-----d~~i~ 160 (839)
.++|.-...+|.||+... +.++..-.---..|....|+| .+++||-=+. -..+.
T Consensus 318 ---Ky~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~FswsP---~~~llAYwtpe~~~~parvt 376 (698)
T KOG2314|consen 318 ---KYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWSP---TSNLLAYWTPETNNIPARVT 376 (698)
T ss_pred ---ceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccCC---CcceEEEEcccccCCcceEE
Confidence 788887779999998653 222111111224588899999 8777774321 22455
Q ss_pred EEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE----------eecCCeEEEEEeeccccccCCCCCCCccCCCC
Q 003208 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS----------GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s----------g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 230 (839)
+-.+.+++.+++..... +..+.+++ ..+|.+|+. ++....+-|+.++
T Consensus 377 L~evPs~~~iRt~nlfn---VsDckLhW-Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------------------- 433 (698)
T KOG2314|consen 377 LMEVPSKREIRTKNLFN---VSDCKLHW-QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------------------- 433 (698)
T ss_pred EEecCccceeeecccee---eeccEEEe-ccCCcEEEEEEEeeccccccceEeeEEEEEee-------------------
Confidence 66666666655443221 11122222 245666664 2222334444444
Q ss_pred CCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcccCccCCCCCceeeeceEeecc
Q 003208 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (839)
...-++..+ .-...|...+|.|.|..+++-+. ..++.+|.+.+.... .+.++ .+.
T Consensus 434 -------------eKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~----~~lVk--~~d-- 491 (698)
T KOG2314|consen 434 -------------EKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK----PSLVK--ELD-- 491 (698)
T ss_pred -------------ccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc----hhhhh--hhc--
Confidence 111222222 24578999999999988776553 356888888742210 12111 111
Q ss_pred ccceEEeEEC--CCEEEEE---eCCCeEEEEcCCC--ceEEEeecccCCceEEEEEccCCCEEEEEeC------CCcEEE
Q 003208 308 NARVWDCCLT--DSFIITA---GEDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKV 374 (839)
Q Consensus 308 ~~~v~~~~~~--~~~l~s~---~~dg~i~vw~~~~--~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~------dg~i~i 374 (839)
......+.|+ |.+++.+ +..|.+..+|.+. -.......|.. .+.+.|+|.|++++|++. |.-.++
T Consensus 492 k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYri 569 (698)
T KOG2314|consen 492 KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYRI 569 (698)
T ss_pred ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceEE
Confidence 1345567788 5666655 4568899999853 22222233443 678899999999999884 556778
Q ss_pred EecCCcCcc
Q 003208 375 HQFQAFLPG 383 (839)
Q Consensus 375 w~~~~~~~~ 383 (839)
|++++..++
T Consensus 570 ~tfqGrll~ 578 (698)
T KOG2314|consen 570 FTFQGRLLK 578 (698)
T ss_pred EEeecHHHH
Confidence 888775543
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.74 E-value=2.9e-06 Score=92.72 Aligned_cols=220 Identities=12% Similarity=0.051 Sum_probs=127.1
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-c--CcEEEEEEeeccCCCCCCCCCccccc
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G--EKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~--~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.|.++|...+. ...+..+.. .+....|+ |||+ .++.+. . ...|++|++..+.
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~-~~~~p~~S-------pdg~---~la~~~~~~~~~~i~v~d~~~g~------------- 225 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSRE-PILSPAWS-------PDGQ---KLAYVSFESGKPEIYVQDLATGQ------------- 225 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCC-ceecccCC-------CCCC---EEEEEEcCCCCcEEEEEECCCCC-------------
Confidence 68888875433 344443333 47788888 8984 333332 2 3579999987532
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEE-EeCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
... +..+.+.+.+++|+| +++.|+. .+.++ .|.+||+.++....... ... ......+ ++++..|+.
T Consensus 226 ~~~---~~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~-~~~~~~~---s~dg~~l~~ 294 (417)
T TIGR02800 226 REK---VASFPGMNGAPAFSP---DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPG-IDTEPSW---SPDGKSIAF 294 (417)
T ss_pred EEE---eecCCCCccceEECC---CCCEEEEEECCCCCccEEEEECCCCCEEECCC-CCC-CCCCEEE---CCCCCEEEE
Confidence 222 223445567789999 9887754 44443 58889998765433222 111 1112233 478877765
Q ss_pred eec-CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 199 GTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 199 g~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
.+. .+ .|+++++. ..+ ...+..+...+....|+|++++++.++
T Consensus 295 ~s~~~g~~~iy~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 295 TSDRGGSPQIYMMDAD---------------------------------GGE-VRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCceEEEEECC---------------------------------CCC-EEEeecCCCCccCeEECCCCCEEEEEE
Confidence 543 34 46666655 222 223444556677889999999999888
Q ss_pred CCC---cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC---eEEEEcCCCceEEEeecc
Q 003208 276 DDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEH 346 (839)
Q Consensus 276 ~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~h 346 (839)
.++ .|.+||+.+... + .+... .......|+ ++.|+..+.++ .+.+.+.+++....+..+
T Consensus 341 ~~~~~~~i~~~d~~~~~~------~-----~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE------R-----VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred ccCCceEEEEEeCCCCCe------E-----EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCC
Confidence 776 788888876433 1 11111 112334566 56666665543 345555566555555443
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.73 E-value=2.7e-07 Score=90.80 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=97.8
Q ss_pred CCCcEEEEeCCCccEEEEEEcCCCCCCccee-eeEeeccceeEEeeEEEeecCCCeEEE--EeCCCCcEEEeeecCCCCc
Q 003208 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSF-TFTWSAGIERQLLGTYWCKSLGHRFIF--TADPKGRLKLWQLCDPFSS 558 (839)
Q Consensus 482 ~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~--s~~~dg~i~~wd~~~~~~~ 558 (839)
++.+++|++..+....++++..... ..++ ...+...... .+. ....+.+.++ .++....+.+|....+..
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~---ai~-~~~~~~sv~v~dkagD~~~~di~s~~~~~~- 144 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVPKRPT---AIS-FIREDTSVLVADKAGDVYSFDILSADSGRC- 144 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCC--cceeeeEeecccCcc---eee-eeeccceEEEEeecCCceeeeeecccccCc-
Confidence 4568888888888877887765432 1111 1111111111 111 1222323332 234444555555553211
Q ss_pred ccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCC
Q 003208 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGIS 638 (839)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 638 (839)
.-..+|-+.++.+++|||+++|+++++|..|+|=.++.. . .+..|.-.|. +
T Consensus 145 ---------------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-------f------~IesfclGH~-e 195 (390)
T KOG3914|consen 145 ---------------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-------F------VIESFCLGHK-E 195 (390)
T ss_pred ---------------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-------c------chhhhccccH-h
Confidence 223489999999999999999999999999999887741 1 1122223565 7
Q ss_pred ceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCce
Q 003208 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRES 675 (839)
Q Consensus 639 ~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 675 (839)
.|..++.- ++ ..|+|+|+|+++++|++..+++.
T Consensus 196 FVS~isl~---~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 196 FVSTISLT---DN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred heeeeeec---cC-ceeeecCCCCcEEEEecccCCcc
Confidence 89999888 33 56899999999999999998764
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=3.7e-08 Score=103.29 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=147.0
Q ss_pred ccccccCCCc----------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-eeeEEeeecCceEEeEEe
Q 003208 6 LSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISC 73 (839)
Q Consensus 6 i~~w~~~~~~----------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~ 73 (839)
..+|++.... |...||.+-|. |. ....+++++ |..+..||..+.. .+.....-+. .-..+.|
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~--~q---~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkw 166 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFN--PQ---HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKW 166 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccC--CC---CCcceeeccccccceeeeccCCCcceeeeecccc-cCceeee
Confidence 3466665543 78899999998 65 233666666 9999999998754 4444443333 3566777
Q ss_pred cccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE
Q 003208 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (839)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~ 153 (839)
+. .++ ..++.+.++.|++||+..+. .++..+++|...|+.++|+.. --..+.++
T Consensus 167 ny------k~p----~vlasshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~--~~s~~~s~ 220 (1081)
T KOG0309|consen 167 NY------KDP----NVLASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRF--KYSEIMSS 220 (1081)
T ss_pred cc------cCc----chhhhccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhh--hhhhhccc
Confidence 73 233 67888889999999998654 677888999999999999752 33467899
Q ss_pred eCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 154 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
+.|++|+.||..+..............++-..+..+. ++..+.---.+..+.+++.++
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n--------------------- 278 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCEN--------------------- 278 (1081)
T ss_pred CCCCceeeecccccccccceeccccCcceeccccccC-ceeEeccccCCeeeeeccccc---------------------
Confidence 9999999999976543322222222233333332221 222222111112444444441
Q ss_pred ceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC----------EEEEEeCCCcEEEEEcccC
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS----------KLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~----------~l~s~s~d~~i~iwd~~~~ 288 (839)
....|.......+++.+.||.+.|....|...+. .|++=|.|.++|+|-+...
T Consensus 279 --~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 279 --SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred --hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 1112222225678999999999998877754322 6999999999999998753
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=7.2e-08 Score=97.64 Aligned_cols=231 Identities=16% Similarity=0.151 Sum_probs=150.6
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.++.++.|++|++|.+..+... ...-.+..++..|..+|.++.|.. +..+++++ |+-|++||.--++
T Consensus 749 SFiSASkDKTVKLWSik~EgD~--------~~tsaCQfTY~aHkk~i~~igfL~---~lr~i~Sc--D~giHlWDPFigr 815 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDE--------IGTSACQFTYQAHKKPIHDIGFLA---DLRSIASC--DGGIHLWDPFIGR 815 (1034)
T ss_pred ceeeccCCceEEEEEeccccCc--------cccceeeeEhhhccCcccceeeee---ccceeeec--cCcceeecccccc
Confidence 6888889999999999864311 111346778999999999999998 87787765 8899999998777
Q ss_pred eEEEEecCC----ceeEEEEeeccCCccceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 169 IILEVHSPE----RCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 169 ~~~~~~~~~----~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
.+.++.... ...+.++. +.+..++.+| +...+|+++|.+..+...
T Consensus 816 ~Laq~~dapk~~a~~~ikcl~----nv~~~iliAgcsaeSTVKl~DaRsce~~~-------------------------- 865 (1034)
T KOG4190|consen 816 LLAQMEDAPKEGAGGNIKCLE----NVDRHILIAGCSAESTVKLFDARSCEWTC-------------------------- 865 (1034)
T ss_pred hhHhhhcCcccCCCceeEecc----cCcchheeeeccchhhheeeeccccccee--------------------------
Confidence 766543211 22222221 2344445544 788999999987211110
Q ss_pred ccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeE-ECCCEEE
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-LTDSFII 322 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~ 322 (839)
.-.+....+....+.+++..+.|++++.+-..|.|.+.|.+++.. +. ....-......++ -++..++
T Consensus 866 --E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-----IN-----swrpmecdllqlaapsdq~L~ 933 (1034)
T KOG4190|consen 866 --ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-----IN-----SWRPMECDLLQLAAPSDQALA 933 (1034)
T ss_pred --eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-----ec-----cCCcccchhhhhcCchhHHHH
Confidence 011222245667899999999999999999999999999999865 21 1111111112222 2356778
Q ss_pred EEeCCCeEEE-EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 323 TAGEDCTCRV-WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 323 s~~~dg~i~v-w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
....|.++.+ |.. +|....+.+.... +..- ...-|.-++++.....+.+|.-
T Consensus 934 ~saldHslaVnWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 934 QSALDHSLAVNWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred hhcccceeEeeehhcCCeeeeccCCCCc-chhh--hhccCceeEEeccCcEEEEEec
Confidence 8888999998 987 6655555544333 2111 1223556777777778888854
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=1.7e-07 Score=92.11 Aligned_cols=85 Identities=25% Similarity=0.402 Sum_probs=71.3
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCe
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCT 329 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~ 329 (839)
.+-||...++.|+|+||+++|+++..|..||+-....... ++ ....||+..|..++.. +..|+++|.|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-----Ie----sfclGH~eFVS~isl~~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-----IE----SFCLGHKEFVSTISLTDNYLLLSGSGDKT 216 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-----hh----hhccccHhheeeeeeccCceeeecCCCCc
Confidence 4569999999999999999999999999999987765432 22 2567899999999988 556799999999
Q ss_pred EEEEcC-CCceEEEee
Q 003208 330 CRVWGS-DGKQLKMIK 344 (839)
Q Consensus 330 i~vw~~-~~~~~~~~~ 344 (839)
+++||+ +|+.+.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 999999 888876654
No 274
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.6e-06 Score=91.13 Aligned_cols=199 Identities=13% Similarity=0.048 Sum_probs=116.8
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCC---CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-Eeec
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~ 201 (839)
+.+..+...+....|+| +++.|+..+.+ ..|.+||+.+++......... ......+ +|++..|+ +.+.
T Consensus 192 ~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g--~~~~~~~---SpDG~~la~~~~~ 263 (430)
T PRK00178 192 VTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG--LNGAPAW---SPDGSKLAFVLSK 263 (430)
T ss_pred eEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC--CcCCeEE---CCCCCEEEEEEcc
Confidence 34445677899999999 99988876543 368999998876543222111 1112333 68888776 4444
Q ss_pred CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CC
Q 003208 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (839)
Q Consensus 202 dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~ 278 (839)
+| .|++||+. .+. ...+..+........|+|+++.|+..+. ++
T Consensus 264 ~g~~~Iy~~d~~---------------------------------~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 264 DGNPEIYVMDLA---------------------------------SRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCCceEEEEECC---------------------------------CCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 55 57777876 222 2234445555667889999998876654 33
Q ss_pred --cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeC-CC--eEEEEcCCCceEEEeecccCCce
Q 003208 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGI 351 (839)
Q Consensus 279 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~h~~~~i 351 (839)
.|.++++.+++. +.+ ...+ .......|+ ++.++.... ++ .|.+||+.+.....+... . ..
T Consensus 310 ~~~iy~~d~~~g~~------~~l---t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~-~~ 376 (430)
T PRK00178 310 KPQIYKVNVNGGRA------ERV---TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-S-LD 376 (430)
T ss_pred CceEEEEECCCCCE------EEe---ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-C-CC
Confidence 577777766543 111 1111 122345666 566665543 33 578888843333444321 1 12
Q ss_pred EEEEEccCCCEEEEEeCC-C--cEEEEecCC
Q 003208 352 WRCLYDSLSSLLVTAGFD-S--AIKVHQFQA 379 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~d-g--~i~iw~~~~ 379 (839)
....|+|+|+.++..+.+ | .+.++++++
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 356899999987766643 3 355556544
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=4.2e-07 Score=83.86 Aligned_cols=76 Identities=18% Similarity=0.374 Sum_probs=61.8
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEE
Q 003208 257 GSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRV 332 (839)
Q Consensus 257 ~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~v 332 (839)
..|.+++-+|.. +.+++|++||.+-+||.+..... . ..+..|+.+++.+.|+ |..|+++++||.+.-
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----~-----S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----V-----SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch----H-----HHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 348999999854 56778889999999999986431 1 2677899999999998 689999999999999
Q ss_pred EcCCCceEE
Q 003208 333 WGSDGKQLK 341 (839)
Q Consensus 333 w~~~~~~~~ 341 (839)
||.++..+.
T Consensus 251 wdas~~~l~ 259 (319)
T KOG4714|consen 251 WDASTTFLS 259 (319)
T ss_pred EcCCCceEE
Confidence 998755443
No 276
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=8.7e-06 Score=88.58 Aligned_cols=199 Identities=12% Similarity=0.071 Sum_probs=113.0
Q ss_pred eccCCCcceEEEEEeeccCCCcEEEEEeCC---CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE-eecC
Q 003208 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY 202 (839)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~d 202 (839)
.+..+...+.+..|+| +++.|+..+.+ ..|.+||+.+++......... ......+ +|++..|+. .+.+
T Consensus 212 ~l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g--~~~~~~w---SPDG~~La~~~~~~ 283 (448)
T PRK04792 212 MLLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG--INGAPRF---SPDGKKLALVLSKD 283 (448)
T ss_pred EeecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC--CcCCeeE---CCCCCEEEEEEeCC
Confidence 3445567888999999 99988876543 258899998776532221111 1122333 688887764 5666
Q ss_pred Ce--EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CC-
Q 003208 203 NE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR- 278 (839)
Q Consensus 203 g~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~- 278 (839)
|. |+++|+. .++ ...+..+........|+||+++|+..+. ++
T Consensus 284 g~~~Iy~~dl~---------------------------------tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~ 329 (448)
T PRK04792 284 GQPEIYVVDIA---------------------------------TKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGK 329 (448)
T ss_pred CCeEEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 65 6666665 222 2334445556677899999998876654 34
Q ss_pred -cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeC-CC--eEEEEcCCCceEEEeecccCCceE
Q 003208 279 -SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGIW 352 (839)
Q Consensus 279 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~h~~~~i~ 352 (839)
.|.++|+.+++. +.+ ...++ ......|+ +++++..+. ++ .|.++|+.+.....+..... ..
T Consensus 330 ~~Iy~~dl~~g~~------~~L---t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~ 396 (448)
T PRK04792 330 PQIYRVNLASGKV------SRL---TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DE 396 (448)
T ss_pred ceEEEEECCCCCE------EEE---ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CC
Confidence 466666665443 111 11222 22345676 556655443 44 34556764333334432211 23
Q ss_pred EEEEccCCCEEEEEeC-CCc--EEEEecCCc
Q 003208 353 RCLYDSLSSLLVTAGF-DSA--IKVHQFQAF 380 (839)
Q Consensus 353 ~~~~~~~~~~l~t~~~-dg~--i~iw~~~~~ 380 (839)
...|+|+|+.|+.... ++. +.+++.++.
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 4579999987766554 443 555666554
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.63 E-value=0.00088 Score=67.81 Aligned_cols=230 Identities=12% Similarity=0.031 Sum_probs=133.9
Q ss_pred EeCCCeEEEE--cCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceE
Q 003208 324 AGEDCTCRVW--GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (839)
Q Consensus 324 ~~~dg~i~vw--~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (839)
...||.=.+| |++|+-+++...... -.+-..+.||+.++- +..|.|.+||.....+..++..
T Consensus 242 sD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~------------- 305 (668)
T COG4946 242 SDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIG------------- 305 (668)
T ss_pred ecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecC-------------
Confidence 3445444444 446666554433332 233345668876654 4457899999976544433321
Q ss_pred EeecCCCccc-eeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCC
Q 003208 402 SIKIPNFSEQ-IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (839)
Q Consensus 402 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (839)
+|-..+. ....-...+.....+.. +|.+++..+.|+.+..+.|.... .+..+.+.+.-.....
T Consensus 306 ---lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~------iqv~~~~~VrY~r~~~------ 369 (668)
T COG4946 306 ---LPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFIMRPWDGYS------IQVGKKGGVRYRRIQV------ 369 (668)
T ss_pred ---CccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEEECCCCCee------EEcCCCCceEEEEEcc------
Confidence 1111000 00000000111122222 46777777888888777665432 2223333344333322
Q ss_pred CCCCcEEEEeCCCc-cEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcc
Q 003208 481 CGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSV 559 (839)
Q Consensus 481 ~~~~~~l~~g~~dg-~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~ 559 (839)
+.+-++.|..|| .+-+|+..+++.+. ....-+.+.. +..+++|++++.+.....+.+.|++++..
T Consensus 370 --~~e~~vigt~dgD~l~iyd~~~~e~kr--------~e~~lg~I~a--v~vs~dGK~~vvaNdr~el~vididngnv-- 435 (668)
T COG4946 370 --DPEGDVIGTNDGDKLGIYDKDGGEVKR--------IEKDLGNIEA--VKVSPDGKKVVVANDRFELWVIDIDNGNV-- 435 (668)
T ss_pred --CCcceEEeccCCceEEEEecCCceEEE--------eeCCccceEE--EEEcCCCcEEEEEcCceEEEEEEecCCCe--
Confidence 235788999999 99999998765321 1122233433 56889999999999888899999988742
Q ss_pred cccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCc----cEEEEecccc
Q 003208 560 CYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG----NLVLFPLLRD 612 (839)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg----~i~iw~~~~~ 612 (839)
....+...+-|+.++|+|+++++|-+--+| .|++||+...
T Consensus 436 -------------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 436 -------------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred -------------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 111123356699999999999999887766 5889998853
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=109.24 Aligned_cols=187 Identities=12% Similarity=0.182 Sum_probs=142.6
Q ss_pred CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
+-..|.++.=+| ...+.+||+.||.|++|....++.+........+.+..+.| +.+|+....+..||.+.+|..
T Consensus 2207 ~v~~v~r~~sHp---~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f---~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP---SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF---NHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCC---CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh---cccCCceeeeccCCceeeccc
Confidence 345677888888 78888999999999999999888887776444344444444 578899999999999999997
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRA 287 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~d~~i~iwd~~~ 287 (839)
. .++....+.|........|-. ..+++++ +++.+.+||...
T Consensus 2281 ~----------------------------------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~ 2324 (2439)
T KOG1064|consen 2281 S----------------------------------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL 2324 (2439)
T ss_pred C----------------------------------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhccc
Confidence 5 456666778888888888865 4566653 678999999765
Q ss_pred CccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEE
Q 003208 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~ 364 (839)
... .. .....|...++++++.| ..+++||.+|.|++||+ ..+.+++++ . ++ ...+++
T Consensus 2325 ~~~-----~s----~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~------~----~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2325 PPM-----NS----LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ------A----LD-TREYFV 2384 (2439)
T ss_pred Ccc-----cc----eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh------h----hh-hhheee
Confidence 433 11 23478999999999995 68999999999999999 333333332 1 33 457899
Q ss_pred EEeCCCcEEEEecCC
Q 003208 365 TAGFDSAIKVHQFQA 379 (839)
Q Consensus 365 t~~~dg~i~iw~~~~ 379 (839)
+|+..|.++||++..
T Consensus 2385 ~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ccCcccceEEEEccc
Confidence 999999999999965
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=0.00015 Score=71.15 Aligned_cols=264 Identities=16% Similarity=0.134 Sum_probs=158.1
Q ss_pred CcCccccccCCCc----------eeeeeeEEEEecCCCCCCCcceEEEee----CCeeEEEECCC--CeeeeEEee-ecC
Q 003208 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEA--GTLIRPFQV-FHG 65 (839)
Q Consensus 3 d~~i~~w~~~~~~----------~~~~Vt~l~f~~~~~~~~~~~~l~~g~----~~~v~iwd~~~--~~~~~~~~~-~~~ 65 (839)
++-|.+|++.+.. ..+.++-|+++ |+ ++.|.++. +|.|.-|.++. |++-..=+. ..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~--~~----~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN--PD----QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC--CC----CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 4457888887533 55778999999 98 77777765 36777777653 654322221 123
Q ss_pred ceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc----------
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW---------- 134 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------- 134 (839)
.+.+-++++ ++|+ .++++ ...+.|.++.+..... .........|.+.
T Consensus 89 ~~p~yvsvd-------~~g~---~vf~AnY~~g~v~v~p~~~dG~------------l~~~v~~~~h~g~~p~~rQ~~~h 146 (346)
T COG2706 89 SPPCYVSVD-------EDGR---FVFVANYHSGSVSVYPLQADGS------------LQPVVQVVKHTGSGPHERQESPH 146 (346)
T ss_pred CCCeEEEEC-------CCCC---EEEEEEccCceEEEEEcccCCc------------cccceeeeecCCCCCCccccCCc
Confidence 344778888 8873 44444 3579999999975331 1111112223333
Q ss_pred eEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCCceEEEEe--cCCceeEEEEeeccCCccceEEEEee-cCCeEEEEEe
Q 003208 135 VFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKV 210 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~l~sg~-~dg~i~vw~~ 210 (839)
+....+.| ++++|++... --.|.+|++..+.....-. ...++---.+.|+ |++++...-+ -+++|.+|..
T Consensus 147 ~H~a~~tP---~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH---pn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 147 VHSANFTP---DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH---PNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred cceeeeCC---CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc---CCCcEEEEEeccCCEEEEEEE
Confidence 78888999 9999988753 2369999998776533211 1222222344553 7777766644 4899999998
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE---e---cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---V---GHEGSIFRIEWSSCGSKLVSVSD-DRSARIW 283 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iw 283 (839)
..... ..+.++.+ . .-..+...|..++||++|.++.+ ...|.++
T Consensus 221 ~~~~g-----------------------------~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 221 NPAVG-----------------------------KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred cCCCc-----------------------------eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 72100 11111111 1 12356778999999999988754 3368888
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC-CeEEEEcC
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-g~i~vw~~ 335 (839)
.+...... +.... ....+........|+ +++|+.+.++ ..|.+|..
T Consensus 272 ~V~~~~g~----L~~~~--~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 272 SVDPDGGK----LELVG--ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEcCCCCE----EEEEE--EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 77664331 22222 222233334555555 7888888766 46888877
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=8.9e-07 Score=81.77 Aligned_cols=113 Identities=13% Similarity=0.234 Sum_probs=74.9
Q ss_pred CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CC
Q 003208 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CG 268 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~ 268 (839)
+....++++|+.||.+.+||++. ...+...++.|+.+|..+.|+| ++
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn--------------------------------~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARN--------------------------------VAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cccccEEEEecCCCeEEEEEccc--------------------------------ccchHHHHHHhhhhhhheeccCCCc
Confidence 34567889999999999999981 2234455789999999999999 56
Q ss_pred CEEEEEeCCCcEEEEEcccCccC------------CCCCcee-eec-eEeeccccceEEeEECCCEEEEEeCCCeEEEEc
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWK------------DSDSIEE-VGS-SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~------------~~~~~~~-~~~-~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~ 334 (839)
..|++++.||.+..||..+.-.. ..+..+- +.. ..+......|.++...+..+++|+.-+.|++++
T Consensus 237 ~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred hheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 78999999999999998753221 0011110 000 011112223444444477888888877777764
No 281
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=2.1e-05 Score=84.85 Aligned_cols=242 Identities=11% Similarity=0.023 Sum_probs=130.5
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC--cEEEEEEeeccCCCCCCCCCccccce
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE--KRVKLFELNFELSPNSQYQPETCVNL 122 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~ 122 (839)
.|.+.|...+.. +.+.... ..+..=.|+ |||+.....++...+ ..|.+.++..+. .
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~-~~~~sP~wS-------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~-------------~ 223 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEH-SLSITPTWM-------HIGSGFPYLYVSYKLGVPKIFLGSLENPA-------------G 223 (428)
T ss_pred eEEEEcCCCCCc-eEcccCC-CCcccceEc-------cCCCceEEEEEEccCCCceEEEEECCCCC-------------c
Confidence 677777654443 3333222 234555788 998521111233333 356666665433 3
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-----CCcEEEEecCCC--ceEEEEecCCceeEEEEeeccCCccceE
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALR 195 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-----d~~i~vwd~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 195 (839)
+.+..+.+ .....+|+| +|+.||..+. +-.+.+|++..+ .....+............+ +|+|..
T Consensus 224 ~~lt~~~g---~~~~p~wSP---DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w---SPDG~~ 294 (428)
T PRK01029 224 KKILALQG---NQLMPTFSP---RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF---SPDGTR 294 (428)
T ss_pred eEeecCCC---CccceEECC---CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE---CCCCCE
Confidence 34444444 345678999 9988876553 223455777642 1222222111111122333 689987
Q ss_pred EEEee-cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEE
Q 003208 196 IASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (839)
Q Consensus 196 l~sg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 274 (839)
|+..+ .+|...+|.+... ........+..+...+....|+|||++|+..
T Consensus 295 Laf~s~~~g~~~ly~~~~~------------------------------~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQID------------------------------PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred EEEEECCCCCceEEEEECc------------------------------ccccceEEeccCCCCccceeECCCCCEEEEE
Confidence 77654 5676666654300 0111233344455677789999999998876
Q ss_pred eCC---CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEE-EeC--CCeEEEEcCCCceEEEeecc
Q 003208 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT-AGE--DCTCRVWGSDGKQLKMIKEH 346 (839)
Q Consensus 275 s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s-~~~--dg~i~vw~~~~~~~~~~~~h 346 (839)
+.+ ..|.+||+.+++. + .+......+....|+ ++.|+. ... ...|.++++.+.....+...
T Consensus 345 ~~~~g~~~I~v~dl~~g~~------~-----~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRD------Y-----QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EcCCCCcEEEEEECCCCCe------E-----EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 653 4689999987654 1 222222345667787 455553 332 35688888854444444433
Q ss_pred cCCceEEEEEccC
Q 003208 347 IGRGIWRCLYDSL 359 (839)
Q Consensus 347 ~~~~i~~~~~~~~ 359 (839)
.+ .+...+|+|-
T Consensus 414 ~g-~~~~p~Ws~~ 425 (428)
T PRK01029 414 SG-EKRFPSWGAF 425 (428)
T ss_pred CC-cccCceecCC
Confidence 33 3556677664
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=0.00085 Score=66.10 Aligned_cols=269 Identities=12% Similarity=0.169 Sum_probs=156.9
Q ss_pred eEEEEEc---CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC---CCcEEEE
Q 003208 89 FEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVW 162 (839)
Q Consensus 89 ~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~---d~~i~vw 162 (839)
.++.+.. ++-|.+|++.+.... .... .+-.+.+.++-|+|+| +++.|.++-. +|.|-.|
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~-----------l~~~-~~v~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay 69 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGE-----------LSLL-QLVAELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAY 69 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccc-----------cchh-hhccccCCCceEEECC---CCCEEEEEEecCCcCcEEEE
Confidence 3444444 678999999864411 1112 2224556678899999 9988888754 4667777
Q ss_pred ecCC--CceEEE--EecCCceeEEEEeeccCCccceEEEEeec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceee
Q 003208 163 DISN--SSIILE--VHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (839)
Q Consensus 163 d~~~--~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (839)
.+.. |+.... ........++ +++ ++++.+|+++.. .|.|.++-++...
T Consensus 70 ~iD~~~G~Lt~ln~~~~~g~~p~y-vsv---d~~g~~vf~AnY~~g~v~v~p~~~dG----------------------- 122 (346)
T COG2706 70 RIDPDDGRLTFLNRQTLPGSPPCY-VSV---DEDGRFVFVANYHSGSVSVYPLQADG----------------------- 122 (346)
T ss_pred EEcCCCCeEEEeeccccCCCCCeE-EEE---CCCCCEEEEEEccCceEEEEEcccCC-----------------------
Confidence 6654 443322 1111122122 222 688888887654 5899999886210
Q ss_pred EeecccccceeeEEEecCCCC----------eEEEEEcCCCCEEEEEe--CCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 238 KLQDQQHTAVNLFRLVGHEGS----------IFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~----------V~~l~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
.....-.+..|.+. +....+.|++++|+++. .| .|.+|++..+.. ....+..+
T Consensus 123 -------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L------~~~~~~~v- 187 (346)
T COG2706 123 -------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKL------TPADPAEV- 187 (346)
T ss_pred -------ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcc------cccccccc-
Confidence 00111111123333 77889999999998875 34 589999997654 22221122
Q ss_pred ccccceEEeEECC--CEEE-EEeCCCeEEEEcCCC--ceEEEeeccc-------C-CceEEEEEccCCCEEEEEeC-CCc
Q 003208 306 GHNARVWDCCLTD--SFII-TAGEDCTCRVWGSDG--KQLKMIKEHI-------G-RGIWRCLYDSLSSLLVTAGF-DSA 371 (839)
Q Consensus 306 ~h~~~v~~~~~~~--~~l~-s~~~dg~i~vw~~~~--~~~~~~~~h~-------~-~~i~~~~~~~~~~~l~t~~~-dg~ 371 (839)
........|.|++ ++.. ..-.+++|-+|..+. ..+..++.+. + ...-.|.+++||++|+++.. ...
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 3445667899983 4444 344689999999833 3333332211 1 13556788999999998775 347
Q ss_pred EEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEecc
Q 003208 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (839)
Q Consensus 372 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 439 (839)
|.+|.+... ...+ .+ +.....+....+.+.|++.+.+|+++++
T Consensus 268 I~~f~V~~~----------------~g~L-~~--------~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 268 IAVFSVDPD----------------GGKL-EL--------VGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EEEEEEcCC----------------CCEE-EE--------EEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 777776321 0000 00 1111122234788899998887777653
No 283
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.58 E-value=0.00017 Score=73.81 Aligned_cols=261 Identities=10% Similarity=0.071 Sum_probs=144.3
Q ss_pred cCccccccCCCceeeeee-----EEEEecCCCCCCCcceEEE--e---------eCCeeEEEECCCCeeeeEEeeecC--
Q 003208 4 KDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLA--G---------SGSQVLLYDLEAGTLIRPFQVFHG-- 65 (839)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt-----~l~f~~~~~~~~~~~~l~~--g---------~~~~v~iwd~~~~~~~~~~~~~~~-- 65 (839)
+++.+.|..+.+..+.|. ...++ || ++.++. . .+..|.|||.++.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~s--pD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVA--SD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeEC--CC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 678888888877555432 12378 88 444444 3 348999999999999999886322
Q ss_pred ----ceEEeEEecccccccCCCccceeeEEEEE--c-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEE
Q 003208 66 ----IRLHGISCNFINCTEGSVSTRVTFEVALF--G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (839)
Q Consensus 66 ----~~v~~i~~~~~~~~~~~~~~~~~~~l~~~--~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (839)
.....++++ ||| ..+.++ . +..|.+.|+.... .+..+.. .+...-.
T Consensus 101 ~~~~~~~~~~~ls-------~dg----k~l~V~n~~p~~~V~VvD~~~~k---------------vv~ei~v-p~~~~vy 153 (352)
T TIGR02658 101 FLVGTYPWMTSLT-------PDN----KTLLFYQFSPSPAVGVVDLEGKA---------------FVRMMDV-PDCYHIF 153 (352)
T ss_pred hhccCccceEEEC-------CCC----CEEEEecCCCCCEEEEEECCCCc---------------EEEEEeC-CCCcEEE
Confidence 123367788 898 444443 3 7999999998633 3333322 1111111
Q ss_pred EEeeccCCCcEEEEEeCCCcEEEEecCC-CceE-EEEe--cCCceeEEEE-eeccCCccceEEEEeecCCeEEEEEeecc
Q 003208 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSII-LEVH--SPERCLLYSM-KLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (839)
Q Consensus 139 ~~~~~~~~~~~las~~~d~~i~vwd~~~-~~~~-~~~~--~~~~~~~~s~-~~~~~~~~~~~l~sg~~dg~i~vw~~~~~ 213 (839)
..+ +....+-+ .||......+.+ ++.. .... ......++.- .+ ...++.++..... |.|.+-|+...
T Consensus 154 ~t~----e~~~~~~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~--~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTA----NDTFFMHC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY--SNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred Eec----CCccEEEe-ecCceEEEEecCCCceEEeeeeeecCCccccccCCce--EcCCCcEEEEecC-CeEEEEecCCC
Confidence 111 11112222 244333322221 2211 1100 0100111110 01 1236777766665 99999996521
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-------cCCCCeEEEEEcCCCCEEEEEe----------C
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVS----------D 276 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s----------~ 276 (839)
... .......+. -..+.+.-++++|++++++... .
T Consensus 226 ~~~----------------------------~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 226 DAK----------------------------FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred cce----------------------------ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 111 111111111 1223444599999999888743 2
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEe-CCCeEEEEcC-CCceEEEee
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~-~dg~i~vw~~-~~~~~~~~~ 344 (839)
.+.|.++|..+.+. +. ...-...++.++++ ++ ++++.. .++.|.+.|. +++.+..+.
T Consensus 278 ~~~V~ViD~~t~kv-----i~------~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKTGKR-----LR------KIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCCCeE-----EE------EEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 25799999988665 22 11224578999998 45 666555 6888999999 788887773
No 284
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=3.1e-05 Score=84.69 Aligned_cols=231 Identities=10% Similarity=-0.008 Sum_probs=127.5
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCccccc
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.|.++|.+.+. ...+..+. ..+....|+ |||+ .++.++. ...|.+|++..+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~-~~~~~p~wS-------pDG~---~la~~s~~~~~~~l~~~~l~~g~------------- 234 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR-EPILSPRWS-------PDGK---RIAYVSFEQKRPRIFVQNLDTGR------------- 234 (430)
T ss_pred EEEEECCCCCC-ceEEecCC-CceeeeeEC-------CCCC---EEEEEEcCCCCCEEEEEECCCCC-------------
Confidence 47888876544 34443333 368888999 9984 3433332 2468888887533
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
.+.+... .+.+...+|+| +++.|+ +...++ .|.+||+.+++... +.... .......+ ++++..|+.
T Consensus 235 ~~~l~~~---~g~~~~~~~Sp---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~-~~~~~~~~---spDg~~i~f 303 (430)
T PRK00178 235 REQITNF---EGLNGAPAWSP---DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP-AIDTEPFW---GKDGRTLYF 303 (430)
T ss_pred EEEccCC---CCCcCCeEECC---CCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC-CCcCCeEE---CCCCCEEEE
Confidence 2223223 33455689999 998876 444444 68888998776433 32221 11222333 578877665
Q ss_pred ee-cCC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 199 GT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 199 g~-~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
.+ .+| .|+++++. .++. ..+...........|+|++++|+..+
T Consensus 304 ~s~~~g~~~iy~~d~~---------------------------------~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 304 TSDRGGKPQIYKVNVN---------------------------------GGRA-ERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCceEEEEECC---------------------------------CCCE-EEeecCCCCccceEECCCCCEEEEEE
Confidence 44 344 45556654 2221 11111112234578999999988776
Q ss_pred CC-C--cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCceEEEeeccc
Q 003208 276 DD-R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHI 347 (839)
Q Consensus 276 ~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~h~ 347 (839)
.+ + .|.+||+.++.. +.+ . +........|+ +..++..+.+ ..+.+++.++.....+..+.
T Consensus 350 ~~~~~~~l~~~dl~tg~~------~~l-----t-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV------RIL-----T-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ccCCceEEEEEECCCCCE------EEc-----c-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 53 3 578888877543 111 1 11111234566 4565554433 34666677666655565444
Q ss_pred CCceEEEEEcc
Q 003208 348 GRGIWRCLYDS 358 (839)
Q Consensus 348 ~~~i~~~~~~~ 358 (839)
+ .+...+|+|
T Consensus 418 g-~~~~p~ws~ 427 (430)
T PRK00178 418 G-EVREPSWSP 427 (430)
T ss_pred C-CcCCCccCC
Confidence 4 355666665
No 285
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=0.00035 Score=65.18 Aligned_cols=99 Identities=10% Similarity=-0.043 Sum_probs=73.1
Q ss_pred CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeec
Q 003208 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (839)
Q Consensus 268 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~ 345 (839)
..+++.||-.+.+.--|..++... ...-...++.+-+.- +++++.|...|.+++.+. +|.....+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-----------We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-----------WEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-----------eehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 456778888888888888877651 222233455554443 889999999999999999 7877777765
Q ss_pred ccCCceE-EEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 346 HIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 346 h~~~~i~-~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
... |- .....+++..+..|+.|+.....|.+.
T Consensus 92 ~~~--vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 92 LET--VKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hhh--hccceEEcCCCceEEEecCCCcEEEecccc
Confidence 443 32 345678899999999999999999855
No 286
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=4.7e-07 Score=60.34 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=35.9
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd 284 (839)
+++..+.+|.+.|.+|+|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46778999999999999999999999999999999997
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.49 E-value=9.8e-05 Score=88.28 Aligned_cols=215 Identities=8% Similarity=-0.029 Sum_probs=124.2
Q ss_pred ceEEEEEeeccCCCcEEEEEe-CCCcEEEEecCCCceEEEEecC-C---------------ceeEEEEeeccCCc-cceE
Q 003208 134 WVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSP-E---------------RCLLYSMKLWGDNL-EALR 195 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~-~d~~i~vwd~~~~~~~~~~~~~-~---------------~~~~~s~~~~~~~~-~~~~ 195 (839)
....+++.+ +++.|+++. ..+.|+++|..++.. .++.+. . -..-+.+.+ ++ ++.+
T Consensus 625 ~P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~---dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNA---KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF---EPVNEKV 697 (1057)
T ss_pred CCcEEEEeC---CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE---ecCCCeE
Confidence 357889988 877666554 456799999876543 222110 0 000122333 34 5667
Q ss_pred EEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee-----EEEecCCCCeEEEEEcCCCCE
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-----FRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~V~~l~~~~~~~~ 270 (839)
.++.+.++.|++||...+... .+.. .+... ......-....+|+++|+++.
T Consensus 698 yVad~~~~~I~v~d~~~g~v~----------------------~~~G--~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTR----------------------VFSG--DGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEE----------------------EEec--CCccccCCCCccccccccCccEEEEeCCCCE
Confidence 777778899999998622110 0000 00000 000011234678999999985
Q ss_pred E-EEEeCCCcEEEEEcccCccCC---CCCceeeeceEee--------ccccceEEeEEC--CCEEEEEeCCCeEEEEcCC
Q 003208 271 L-VSVSDDRSARIWEVRAEYWKD---SDSIEEVGSSVLY--------GHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 271 l-~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~--------~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 336 (839)
| ++-+.++.|++||+.++.... ...........+. ..-.....++++ ++.+++-..++.|++||..
T Consensus 754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 4 555667899999987653200 0000000000000 001123467776 5678888889999999995
Q ss_pred CceEEEeecccC-------------CceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 337 GKQLKMIKEHIG-------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 337 ~~~~~~~~~h~~-------------~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+..+..+.+... .....++++++|+++++-+.++.|++||++.
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 544444432110 1356889999999888888999999999965
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=0.00044 Score=65.97 Aligned_cols=231 Identities=11% Similarity=0.048 Sum_probs=124.0
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEE
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~v 161 (839)
++| .+||+-.|..|.|-....+-. ...+++ +..+...-.=.-++|+| |+.+||.+...|+|++
T Consensus 7 ~~G----k~lAi~qd~~iEiRsa~Ddf~---------si~~kc-qVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 7 SDG----KLLAILQDQCIEIRSAKDDFS---------SIIGKC-QVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRV 69 (282)
T ss_pred CCC----cEEEEEeccEEEEEeccCCch---------heeEEE-ecCCCCCchheEEEECC---CCcEEEEEcCCCeEEE
Confidence 677 788888888887776553210 001122 11222222236799999 9999999999999999
Q ss_pred EecCCCceEEEEecCC------ceeEEEEeeccCCcc---ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 162 WDISNSSIILEVHSPE------RCLLYSMKLWGDNLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 162 wd~~~~~~~~~~~~~~------~~~~~s~~~~~~~~~---~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
+|+.. ..+..+.... .+.+-.+.|.....+ ...|++-+.+|.++-|-+..+...
T Consensus 70 fdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q---------------- 132 (282)
T PF15492_consen 70 FDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ---------------- 132 (282)
T ss_pred Eeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----------------
Confidence 99965 4444443221 223333433221111 224555556677777765411100
Q ss_pred CceeeEeecccccceeeEE--Ee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc
Q 003208 233 DFKCFKLQDQQHTAVNLFR--LV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (839)
..+..+. +. .+...|.++.++|..+.|+.|+.... +++. ...-..
T Consensus 133 ------------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--------------s~a~~~ 180 (282)
T PF15492_consen 133 ------------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--------------SKASSC 180 (282)
T ss_pred ------------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--------------cccccc
Confidence 2223333 32 34779999999999888877764322 0000 000001
Q ss_pred ceEEeEEC---CCEE-EEEeCCCe------EEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 310 RVWDCCLT---DSFI-ITAGEDCT------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 310 ~v~~~~~~---~~~l-~s~~~dg~------i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.+++=... |-+. ++..+|+. ..+|.+ +.+... ........|..|..+|||+.||+...+|.|.+|++.
T Consensus 181 GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 181 GLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 11111111 1111 11121211 122333 111111 112223369999999999999999999999999995
Q ss_pred C
Q 003208 379 A 379 (839)
Q Consensus 379 ~ 379 (839)
.
T Consensus 260 s 260 (282)
T PF15492_consen 260 S 260 (282)
T ss_pred c
Confidence 5
No 289
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=4.9e-05 Score=82.74 Aligned_cols=231 Identities=11% Similarity=0.035 Sum_probs=124.5
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cC--cEEEEEEeeccCCCCCCCCCccccc
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE--KRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~--~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.|.++|...... +.+... ...+....|+ |||+ .++.++ .+ ..|.+||+..+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~-~~~~~~p~wS-------PDG~---~La~~s~~~g~~~L~~~dl~tg~------------- 253 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRS-PEPLMSPAWS-------PDGR---KLAYVSFENRKAEIFVQDIYTQV------------- 253 (448)
T ss_pred EEEEEeCCCCCc-eEeecC-CCcccCceEC-------CCCC---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 677778654433 333322 2357888999 9984 333333 23 357777776532
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEE-EeCCCc--EEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
.+.+..+.+ .....+|+| +++.|+. .+.++. |.++|+.+++... +.... .......+ ++++..|+.
T Consensus 254 ~~~lt~~~g---~~~~~~wSP---DG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~-~~~~~p~w---SpDG~~I~f 322 (448)
T PRK04792 254 REKVTSFPG---INGAPRFSP---DGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR-AIDTEPSW---HPDGKSLIF 322 (448)
T ss_pred eEEecCCCC---CcCCeeECC---CCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEEEE
Confidence 233333333 334678999 9987764 455664 7778887765433 22221 11223333 578877765
Q ss_pred ee-cCCe--EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 199 GT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 199 g~-~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
.+ .++. |+++|+. .++. ..+..........+|+|+|++|+..+
T Consensus 323 ~s~~~g~~~Iy~~dl~---------------------------------~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 323 TSERGGKPQIYRVNLA---------------------------------SGKV-SRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCceEEEEECC---------------------------------CCCE-EEEecCCCCCcCeeECCCCCEEEEEE
Confidence 44 3454 4444544 2221 12211222334578999999887765
Q ss_pred C-CC--cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEE-EeCCCe--EEEEcCCCceEEEeeccc
Q 003208 276 D-DR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT-AGEDCT--CRVWGSDGKQLKMIKEHI 347 (839)
Q Consensus 276 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s-~~~dg~--i~vw~~~~~~~~~~~~h~ 347 (839)
. ++ .|.++|+.++.. + .+... .......|+ ++.|+. ...++. +.+++.+|+....+..+.
T Consensus 369 ~~~g~~~I~~~dl~~g~~------~-----~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 369 RTNGKFNIARQDLETGAM------Q-----VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred ecCCceEEEEEECCCCCe------E-----EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 5 34 355566665533 1 11111 111123566 455544 334443 667777887777776655
Q ss_pred CCceEEEEEcc
Q 003208 348 GRGIWRCLYDS 358 (839)
Q Consensus 348 ~~~i~~~~~~~ 358 (839)
+ .+...+|+|
T Consensus 437 g-~~~~p~Wsp 446 (448)
T PRK04792 437 G-EVKSPAWSP 446 (448)
T ss_pred C-CcCCCccCC
Confidence 5 366667776
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.4e-07 Score=92.10 Aligned_cols=297 Identities=14% Similarity=0.155 Sum_probs=168.9
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCC
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~d 327 (839)
.+..+.||...|..++--.+.+.+++++.|++|++|.++...-.... ....++...|+.+|.++.|-...-..++.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t---saCQfTY~aHkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT---SACQFTYQAHKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc---ceeeeEhhhccCcccceeeeeccceeeecc
Confidence 45567899999999987777788999999999999999764321000 001157889999999999984333344558
Q ss_pred CeEEEEcC-CCceEEEeecc-cCCceEEEEEcc--CCCEEEEE-eCCCcEEEEecCCc-CccCcCCCCcccccCCCcceE
Q 003208 328 CTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDS--LSSLLVTA-GFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIF 401 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h-~~~~i~~~~~~~--~~~~l~t~-~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (839)
|.+.+||. -|+++..+... ....+..+..-+ +..+++.| +...+|+++|.+.- ... .+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~----------------E~ 867 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC----------------EL 867 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee----------------eE
Confidence 99999998 77766543221 111233333323 34444444 77899999998541 111 11
Q ss_pred EeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEecCCCC-ceeEEEeeecCCCceEEeeecCCCCCC
Q 003208 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDS-VNWNKILQVSEGMPIICMDLLSNEPKY 479 (839)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (839)
.+. + ..+.+..+++++..+.| .+.++-++|.+...+..+... ..|+++.. ++. -+
T Consensus 868 kVc--n-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec----------dll----ql 924 (1034)
T KOG4190|consen 868 KVC--N-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC----------DLL----QL 924 (1034)
T ss_pred Eec--c-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc----------hhh----hh
Confidence 111 0 01122458999999877 455566788887776665542 23544311 110 11
Q ss_pred CCCCCcEEEEeCCCccEEE-EEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCc
Q 003208 480 PCGIDDWVALGDGKGNMTI-VRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (839)
Q Consensus 480 ~~~~~~~l~~g~~dg~i~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~ 558 (839)
..|.+..++....|..+.+ |....+...- ..+-.+++.+- ...-|.-|+++.....+.+|.-.....
T Consensus 925 aapsdq~L~~saldHslaVnWhaldgimh~----q~kpppepahf-------lqsvgpSLV~a~~Gn~lgVYad~a~~h- 992 (1034)
T KOG4190|consen 925 AAPSDQALAQSALDHSLAVNWHALDGIMHL----QDKPPPEPAHF-------LQSVGPSLVTAQNGNILGVYADSAELH- 992 (1034)
T ss_pred cCchhHHHHhhcccceeEeeehhcCCeeee----ccCCCCcchhh-------hhccCceeEEeccCcEEEEEecchhhh-
Confidence 1244466676667777777 7543332110 00000011110 111344567776666677774322110
Q ss_pred ccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEE
Q 003208 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (839)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~i 606 (839)
.. ...+--.+.+ ..+..|+++.-|-+.-+..|...|.|.+
T Consensus 993 -a~---stitKiR~d~----f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 -AE---STITKIRPDE----FPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred -hh---hhhccccccc----cCCccceeeeccccchhhccCCCCceee
Confidence 00 0000011122 3556788888887777778999998876
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=6.1e-07 Score=59.76 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=36.0
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEe
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd 163 (839)
++++.+++|.+.|++|+|+| ++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 57788999999999999999 999999999999999997
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=0.00022 Score=73.44 Aligned_cols=276 Identities=11% Similarity=0.120 Sum_probs=152.6
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc----
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---- 95 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---- 95 (839)
=|-+.|| |- |.||++-.-.-|.+|--.+-..++.+. |. .|.-+.|| |+- .+|++++
T Consensus 213 etyv~wS--P~----GTYL~t~Hk~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfS-------P~E----kYLVT~s~~p~ 272 (698)
T KOG2314|consen 213 ETYVRWS--PK----GTYLVTFHKQGIALWGGESFDRIQRFY--HP-GVQFIDFS-------PNE----KYLVTYSPEPI 272 (698)
T ss_pred eeeEEec--CC----ceEEEEEeccceeeecCccHHHHHhcc--CC-CceeeecC-------Ccc----ceEEEecCCcc
Confidence 3678899 98 999999887779999977666666665 22 48899999 664 5666653
Q ss_pred --------CcEEEEEEeeccCCCCCCCCCccccceeeeEeccC--CCcce-EEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 96 --------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWV-FDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 96 --------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I-~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
...++|||+.++. +.+.+.. -...+ .-..|+. +++++|--.. +.|.||+.
T Consensus 273 ~~~~~d~e~~~l~IWDI~tG~---------------lkrsF~~~~~~~~~WP~frWS~---DdKy~Arm~~-~sisIyEt 333 (698)
T KOG2314|consen 273 IVEEDDNEGQQLIIWDIATGL---------------LKRSFPVIKSPYLKWPIFRWSH---DDKYFARMTG-NSISIYET 333 (698)
T ss_pred ccCcccCCCceEEEEEccccc---------------hhcceeccCCCccccceEEecc---CCceeEEecc-ceEEEEec
Confidence 2689999999754 2222222 11111 2356787 9999886554 67999988
Q ss_pred CCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 165 SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
.+..++..-.-. +-.+.-+..+|.+.+|| .|......... .+.|...+
T Consensus 334 psf~lld~Kslk----i~gIr~FswsP~~~llA---------Ywtpe~~~~pa------------------rvtL~evP- 381 (698)
T KOG2314|consen 334 PSFMLLDKKSLK----ISGIRDFSWSPTSNLLA---------YWTPETNNIPA------------------RVTLMEVP- 381 (698)
T ss_pred CceeeecccccC----CccccCcccCCCcceEE---------EEcccccCCcc------------------eEEEEecC-
Confidence 764433211100 11111122356555555 34433111000 00011111
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS----------DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 314 (839)
+.+.++.-.-|.-.=..|.|-.+|.+|+.-- .-..+-|+.++..... .....-...|...
T Consensus 382 s~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----------ve~velke~vi~F 451 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----------VEVVELKESVIAF 451 (698)
T ss_pred ccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----------ceeeecchheeee
Confidence 2223332222222223455666777765421 1123445555554331 1222334566677
Q ss_pred EEC--CCEEEEEeC---CCeEEEEcCC--C---ceEEEeecccCCceEEEEEccCCCEEEEEe---CCCcEEEEecCC
Q 003208 315 CLT--DSFIITAGE---DCTCRVWGSD--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG---FDSAIKVHQFQA 379 (839)
Q Consensus 315 ~~~--~~~l~s~~~---dg~i~vw~~~--~---~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~---~dg~i~iw~~~~ 379 (839)
+|. |+.+++-+. ..++.+|.+. . +.+.++.. .....+.|+|.|++++.++ ..|.+.++|+..
T Consensus 452 aWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 452 AWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 776 454444332 3578888773 1 23333332 2467899999999887765 468899999854
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.40 E-value=0.00011 Score=70.01 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=113.6
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeec------CceEEeEEecccccccCCCccceeeEEEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH------GIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
.-++|| || +.+||.+. .|+|++||+-. ..+..+.... ...|.++.|..... +.+....+++.
T Consensus 47 Rkl~WS--pD----~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~----s~~ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWS--PD----CTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKK----SAQWSYELLVI 115 (282)
T ss_pred eEEEEC--CC----CcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeecccc----ccccceeEEEE
Confidence 478999 99 77777777 79999999864 4444443211 23577787874421 11111267788
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEec---cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~ 170 (839)
...|.++=|-+..+...+ .+..+.+ ..+...|.++.++| .-++|+.|+.... +++.
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~----------y~e~hsfsf~~~yp~Gi~~~vy~p---~h~LLlVgG~~~~------~~~~-- 174 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQG----------YQENHSFSFSSHYPHGINSAVYHP---KHRLLLVGGCEQN------QDGM-- 174 (282)
T ss_pred eccceeeeEEEEcccCCc----------ceeeEEEEecccCCCceeEEEEcC---CCCEEEEeccCCC------CCcc--
Confidence 888888877775432111 2222322 23567899999999 8788887765332 0000
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEeecCCe------EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
.....+.+.+-+.....|....+. ...|+. -.+|.+-
T Consensus 175 ---s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~--------------------------------- 217 (282)
T PF15492_consen 175 ---SKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIP--------------------------------- 217 (282)
T ss_pred ---ccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeecc---------------------------------
Confidence 001111122222222222222211 111111 1112111
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
..+.......-.+.|..|..+|||..|++...+|.|.+|++..-.+
T Consensus 218 ~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 1111111123467899999999999999999999999999987544
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.40 E-value=8.3e-05 Score=69.40 Aligned_cols=233 Identities=14% Similarity=0.045 Sum_probs=142.4
Q ss_pred eEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
..|+.+ .-|...+|...+.+ ...+....|...|+-+.=.. .....+..++.|.++++.++..+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~--------------~h~~~cd~snn~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND--------------GHLYQCDVSNNDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCcc--------------cceeeecccccchhhhhhhc--ccccceeeccCCcceeEEEEecC
Confidence 455555 47999999987543 11122222322221111000 02234667889999999998765
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
..-..+..+. -...++.+ ++++.++++.+....|..|.+... ...
T Consensus 149 s~~~~~h~~~-~~~ns~~~---snd~~~~~~Vgds~~Vf~y~id~~-------------------------------sey 193 (344)
T KOG4532|consen 149 SNKFAVHNQN-LTQNSLHY---SNDPSWGSSVGDSRRVFRYAIDDE-------------------------------SEY 193 (344)
T ss_pred cccceeeccc-cceeeeEE---cCCCceEEEecCCCcceEEEeCCc-------------------------------cce
Confidence 5444443332 11344444 689999999999999999998711 111
Q ss_pred eeE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--C--CEEE
Q 003208 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D--SFII 322 (839)
Q Consensus 248 ~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~ 322 (839)
... .....++.=++..|+.....+|++..||++.|||++....+ ..... .....|.+.+..+.|+ + .+|+
T Consensus 194 ~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp----m~~~s-strp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 194 IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP----MAEIS-STRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc----hhhhc-ccCCCCCCceEEEEecCCCcceEEE
Confidence 122 23345567788999999999999999999999999876542 11111 2445689999999999 2 3444
Q ss_pred EEeCCCeEEEEcC-CCceEEEee-------cccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 323 TAGEDCTCRVWGS-DGKQLKMIK-------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 323 s~~~dg~i~vw~~-~~~~~~~~~-------~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
-.-.-+.+.+-|+ +++....+. .|....|....|+.++.-+.+..++ .+.-|++.
T Consensus 269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 4444567888888 554333322 2333247777787777666655554 34455553
No 295
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.0001 Score=79.61 Aligned_cols=202 Identities=11% Similarity=-0.034 Sum_probs=111.5
Q ss_pred CCCcceEEEEEeeccCCCcEE---EEEeCC--CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec-CC
Q 003208 130 RLSHWVFDVCFLKVCNGNRSL---AIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YN 203 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l---as~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~-dg 203 (839)
.....+..-+|+| +|+.+ ++...+ ..|.+.++.+++.......+. ......+ +|||..|+..+. +|
T Consensus 182 ~~~~~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--~~~~p~w---SPDG~~Laf~s~~~g 253 (428)
T PRK01029 182 QEHSLSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--NQLMPTF---SPRKKLLAFISDRYG 253 (428)
T ss_pred cCCCCcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC--CccceEE---CCCCCEEEEEECCCC
Confidence 3445567779999 88642 233333 357788887765433322111 1222333 689987776442 23
Q ss_pred --eE--EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe-CCC
Q 003208 204 --EI--IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDR 278 (839)
Q Consensus 204 --~i--~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~ 278 (839)
.+ ..|++..+. .+.......++.+.....+|+|||+.|+..+ .++
T Consensus 254 ~~di~~~~~~~~~g~------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 254 NPDLFIQSFSLETGA------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred CcceeEEEeecccCC------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 23 335544100 1122222223334456789999999887665 466
Q ss_pred cEEEEEccc--CccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCceEEEeecccCCce
Q 003208 279 SARIWEVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (839)
Q Consensus 279 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~h~~~~i 351 (839)
...+|.+.. .... .+ .+..+...+....|+ ++.|+..+.+ ..|.+||+.+.....+..... .+
T Consensus 304 ~~~ly~~~~~~~g~~----~~-----~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~-~~ 373 (428)
T PRK01029 304 RPRIYIMQIDPEGQS----PR-----LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE-NK 373 (428)
T ss_pred CceEEEEECcccccc----eE-----EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC-Cc
Confidence 656665432 1110 11 233334456677888 5666655433 468999994444444443333 46
Q ss_pred EEEEEccCCCEEEEEeC---CCcEEEEecCC
Q 003208 352 WRCLYDSLSSLLVTAGF---DSAIKVHQFQA 379 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~---dg~i~iw~~~~ 379 (839)
....|+|||+.|+.... ...|.++++.+
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 77899999987765443 34577777754
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.37 E-value=0.00015 Score=72.12 Aligned_cols=218 Identities=11% Similarity=0.076 Sum_probs=128.3
Q ss_pred CCeeEEEECCCCeeeeEEeeecC-ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHG-IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
++.|..||..+|+.+.+...... ....+..+. .++ .+++...++.+..||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~----~v~~~~~~~~l~~~d~~tG-------------- 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-------DGG----RVYVASGDGNLYALDAKTG-------------- 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-------ETT----EEEEEETTSEEEEEETTTS--------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-------eCC----EEEEEcCCCEEEEEECCCC--------------
Confidence 57899999999999998875221 111211221 222 6677778999999998763
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE-ecCC--ceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPE--RCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~-~~~~--~~~~~s~~~~~~~~~~~~l~s 198 (839)
+.+..... .+.+..... . .+..++.++.++.+..+|..+++.+.+. .... ......... ...+..++.
T Consensus 57 -~~~W~~~~-~~~~~~~~~-~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 127 (238)
T PF13360_consen 57 -KVLWRFDL-PGPISGAPV-V---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP---AVDGDRLYV 127 (238)
T ss_dssp -EEEEEEEC-SSCGGSGEE-E---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE---EEETTEEEE
T ss_pred -CEEEEeec-cccccceee-e---cccccccccceeeeEecccCCcceeeeeccccccccccccccCc---eEecCEEEE
Confidence 33333222 111111111 2 4555666778889999999999998874 3221 111111111 123667888
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCC----------eEEEEEcCCC
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS----------IFRIEWSSCG 268 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~~~~~ 268 (839)
+..++.|..+|++ +++.+-........ +.+-....++
T Consensus 128 ~~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (238)
T PF13360_consen 128 GTSSGKLVALDPK---------------------------------TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG 174 (238)
T ss_dssp EETCSEEEEEETT---------------------------------TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT
T ss_pred EeccCcEEEEecC---------------------------------CCcEEEEeecCCCCCCcceeeecccccceEEECC
Confidence 8889999999988 44444444332211 1222222344
Q ss_pred CEEEEEeCCCc-EEEEEcccCccCCCCCceeeeceEeeccccceEE-eEECCCEEEEEeCCCeEEEEcC-CCceEE
Q 003208 269 SKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLTDSFIITAGEDCTCRVWGS-DGKQLK 341 (839)
Q Consensus 269 ~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~l~s~~~dg~i~vw~~-~~~~~~ 341 (839)
.++.++.++. +.+ |+.+++. . . ......+.. ....+..++.++.++.+..||+ +|+.+.
T Consensus 175 -~v~~~~~~g~~~~~-d~~tg~~-----~------w-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 175 -RVYVSSGDGRVVAV-DLATGEK-----L------W-SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -EEEEECCTSSEEEE-ETTTTEE-----E------E-EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -EEEEEcCCCeEEEE-ECCCCCE-----E------E-EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 7777777775 555 9888764 1 1 111122333 4445788888889999999999 776654
No 297
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.37 E-value=0.00032 Score=83.93 Aligned_cols=271 Identities=12% Similarity=0.069 Sum_probs=141.5
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeee-c------------CceEEeEEecccccccCCCccc
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-H------------GIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~-~------------~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
..++++ ++ ++++.++-. ++.|++||.. |..+..+... . -...++|++. ++++
T Consensus 571 ~gvavd--~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-------~~gn- 636 (1057)
T PLN02919 571 GKLAID--LL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-------AKKN- 636 (1057)
T ss_pred ceEEEE--CC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-------CCCC-
Confidence 357777 54 255666655 6899999975 5544444321 0 1236788887 6652
Q ss_pred eeeEEE-EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC------C-CcceEEEEEeeccCCC-cEEEEEeCCC
Q 003208 87 VTFEVA-LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR------L-SHWVFDVCFLKVCNGN-RSLAIGCSDN 157 (839)
Q Consensus 87 ~~~~l~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h-~~~I~~~~~~~~~~~~-~~las~~~d~ 157 (839)
.+++ -.+.+.|+++|+...... .+.. .+.....+.+ . -..-.+++++| ++ .++++.+.++
T Consensus 637 --~LYVaDt~n~~Ir~id~~~~~V~--tlag----~G~~g~~~~gg~~~~~~~ln~P~gVa~dp---~~g~LyVad~~~~ 705 (1057)
T PLN02919 637 --LLYVADTENHALREIDFVNETVR--TLAG----NGTKGSDYQGGKKGTSQVLNSPWDVCFEP---VNEKVYIAMAGQH 705 (1057)
T ss_pred --EEEEEeCCCceEEEEecCCCEEE--EEec----cCcccCCCCCChhhhHhhcCCCeEEEEec---CCCeEEEEECCCC
Confidence 3333 345688999987642200 0000 0000000000 0 01235789988 54 4556666788
Q ss_pred cEEEEecCCCceEEEEec--------CC-----ceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCC
Q 003208 158 SIRVWDISNSSIILEVHS--------PE-----RCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 158 ~i~vwd~~~~~~~~~~~~--------~~-----~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
.|++||..++........ .. ......+.+ ++++. +.++.+.++.|++||+..+..........
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav---spdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL---SPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE---eCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 999999977654321100 00 000112333 46666 55566667999999987322100000000
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec--
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-- 301 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-- 301 (839)
. ......+.++...... ...-....+++++++|+.+++-+.++.|++||..++.. ....+.
T Consensus 783 ~-------~~~~l~~fG~~dG~g~-----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~ 845 (1057)
T PLN02919 783 T-------FSDNLFKFGDHDGVGS-----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV-----TTLAGTGK 845 (1057)
T ss_pred c-------cCcccccccCCCCchh-----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE-----EEEeccCC
Confidence 0 0000000000000000 01112346899999999889999999999999987644 111100
Q ss_pred ------eEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCC
Q 003208 302 ------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 302 ------~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 336 (839)
....+.-.....++++ ++.+++-+.++.|++||+.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 0011122345677776 6778888889999999993
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=7.9e-06 Score=88.68 Aligned_cols=179 Identities=10% Similarity=0.103 Sum_probs=131.3
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCcc
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
+..++-|+....+..+|+.+.+..+........ +.-++ .++..+++|...|+|.+-|+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR-----~Nnr~lf~G~t~G~V~LrD~~--------------- 205 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMR-----YNNRNLFCGDTRGTVFLRDPN--------------- 205 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCc-eEEEE-----ecCcEEEeecccceEEeecCC---------------
Confidence 345667777778888999888877766544322 33333 467899999999999999998
Q ss_pred CCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEcccCccCCCCCce
Q 003208 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~ 297 (839)
+.+.++.+..|.+.|..+.. .|+.|++|+. |.-|++||++..+. +.
T Consensus 206 ------------------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----l~ 260 (1118)
T KOG1275|consen 206 ------------------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----LS 260 (1118)
T ss_pred ------------------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-----cC
Confidence 88899999999999977654 7889999974 67789999998665 22
Q ss_pred eeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC---CCceEEEeecc-cCCceEEEEEccCCCEEEEEeCCC
Q 003208 298 EVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDS 370 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~---~~~~~~~~~~h-~~~~i~~~~~~~~~~~l~t~~~dg 370 (839)
+++ -+..+ .-+.|. ...++.++..|...+-|. .......+..+ .+..+.++++++++..++.|..+|
T Consensus 261 PI~-----~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 261 PIQ-----FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred Ccc-----cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 222 11111 334555 467888999999999984 33323333222 232489999999999999999999
Q ss_pred cEEEEec
Q 003208 371 AIKVHQF 377 (839)
Q Consensus 371 ~i~iw~~ 377 (839)
.|.+|.-
T Consensus 335 ~v~~wa~ 341 (1118)
T KOG1275|consen 335 HVNLWAD 341 (1118)
T ss_pred cEeeecC
Confidence 9999984
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=7e-06 Score=77.80 Aligned_cols=248 Identities=14% Similarity=0.139 Sum_probs=142.4
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-e----EEEEecCCc-----------eeEEEEeeccCCccceE
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-I----ILEVHSPER-----------CLLYSMKLWGDNLEALR 195 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-~----~~~~~~~~~-----------~~~~s~~~~~~~~~~~~ 195 (839)
.+.|+++.|.. .|.+|++|...|.|.++.-+... + ...++++.. -.+..+.++..... ..
T Consensus 26 ad~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r-~h 101 (460)
T COG5170 26 ADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR-NH 101 (460)
T ss_pred cceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc-ce
Confidence 46799999988 99999999988999999875432 1 111222221 11233444333333 34
Q ss_pred EEEeecCCeEEEEEeeccccccCCCCCCC---ccCCCCCC-CceeeEeecccc-----cceeeEEE-ecCCCCeEEEEEc
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEG---NHAHGSSS-DFKCFKLQDQQH-----TAVNLFRL-VGHEGSIFRIEWS 265 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~-~~h~~~V~~l~~~ 265 (839)
++..+.|.+|++|.+......-....... -++.+... ....+++-.... ...+.+.. ..|...|.++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 55556899999999984322211111111 11111111 111111111000 11111122 5788899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC---CEEEEEeCCCeEEEEcCCCceE--
Q 003208 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQL-- 340 (839)
Q Consensus 266 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~-- 340 (839)
.|...++++ +|-.|.+|++...... ..+.-++|..+.....-|++..|++ +.+.-.+..|.|++-|+....+
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~s--FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGS--FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCc--eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 998888776 5678999998764431 1122222223333345678888984 6677778899999999831110
Q ss_pred ---EE----e--------ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC--cCccCcCCC
Q 003208 341 ---KM----I--------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESH 388 (839)
Q Consensus 341 ---~~----~--------~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~ 388 (839)
.. + ..-. +.|..+.|+++|+++++-..- +|++||.+. .+++++.-|
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechH
Confidence 10 0 1111 247788999999999876654 899999853 555555433
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=2.7e-07 Score=98.90 Aligned_cols=193 Identities=13% Similarity=0.167 Sum_probs=135.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|....||++|+ .+ .+.|+.|. .|.|++|++.+|.......+|.. +|+-+..+ .||. .+++.+
T Consensus 1100 ~~~~fTc~afs--~~----~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs-------~dgs---~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GG----TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS-------VDGS---TQLTSS 1162 (1516)
T ss_pred cccceeeEEee--cC----CceEEeeeccceEEEEEccCcccccccccccc-cccccccc-------CCcc---eeeeec
Confidence 56778999999 66 78888888 89999999999999999998766 69999888 7773 445443
Q ss_pred c--CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 95 ~--~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
. .-...+|++... +...+++.+ -.++.|+. ....-+.|.......+||++++..+.+
T Consensus 1163 s~S~PlsaLW~~~s~--------------~~~~Hsf~e----d~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------GGPRHSFDE----DKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc--------------cCccccccc----cceeehhh---hHHHHHhcccccceEEEecccCcHHHH
Confidence 3 346789998752 344455443 46778876 433334455556789999999988877
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
+-.+.-...|+-.+..++|...+|+--+ .+||++ ....++.|
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR---------------------------------~~~aIh~F 1263 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVR---------------------------------IPEAIHRF 1263 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEeeCc-----eeeeec---------------------------------cHHHHhhh
Confidence 5444333334444445678888777433 589988 45556666
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
...+..+.+ .|+|.|..++.-+. |||+++.+.
T Consensus 1264 D~ft~~~~G-~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1264 DQFTDYGGG-GFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hhheecccc-cccCCCceEEeech-----hhhhHHHHH
Confidence 544434333 38999999988776 899998654
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.4e-05 Score=82.98 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=75.5
Q ss_pred EEEecCCCCCCCcceEEEee-----CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEE-EEcC
Q 003208 23 LCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA-LFGE 96 (839)
Q Consensus 23 l~f~~~~~~~~~~~~l~~g~-----~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~-~~~~ 96 (839)
.+++ |. .+++++++ +|.|.||- ++|++.+.+.. ...+.+++|+ |.. .+++ .|.-
T Consensus 21 ~SWH--Ps----ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWH-------pe~----~vLa~gwe~ 80 (1416)
T KOG3617|consen 21 SSWH--PS----EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWH-------PEE----FVLAQGWEM 80 (1416)
T ss_pred cccC--CC----CceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccC-------hHH----HHHhhcccc
Confidence 4455 66 56666644 58999997 67886554443 1235678999 552 3333 3567
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~ 165 (839)
|.+.+|...+. +.-.....|..+|..+.|+| +|..++|+..-|.|.+|...
T Consensus 81 g~~~v~~~~~~---------------e~htv~~th~a~i~~l~wS~---~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTT---------------ETHTVVETHPAPIQGLDWSH---DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCc---------------eeeeeccCCCCCceeEEecC---CCCeEEEcCCCceeEEEEee
Confidence 99999987652 22233457999999999999 99999999999999999875
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.29 E-value=0.00035 Score=75.28 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=146.7
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEe-EEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+++++.+.++.|..+|.++|+++.+.+... .+.+ ..+ .++ .+++..+++.+.-+|.+++.
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v--------~~~----~v~v~~~~g~l~ald~~tG~----- 181 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVV--------SDG----LVLVHTSNGMLQALNESDGA----- 181 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEE--------ECC----EEEEECCCCEEEEEEccCCC-----
Confidence 344444458999999999999988877532 1221 111 133 56666778888888887643
Q ss_pred CCCccccceeeeEeccCCCcceEEE--EEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec--CCce-e---EEEEe
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDV--CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERC-L---LYSMK 185 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~--~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~--~~~~-~---~~s~~ 185 (839)
.+-...... +...+ .-+|.- .+..++.++.++.+...|..+++.+.+... +... . ...+.
T Consensus 182 ----------~~W~~~~~~-~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~ 249 (394)
T PRK11138 182 ----------VKWTVNLDV-PSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD 249 (394)
T ss_pred ----------EeeeecCCC-CcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccC
Confidence 222221110 00000 011110 223466677789999999998887654431 1100 0 00000
Q ss_pred eccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEc
Q 003208 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (839)
Q Consensus 186 ~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 265 (839)
. ..-..+..++.++.+|.+..+|.. +++.+-... .+....+.
T Consensus 250 ~-sP~v~~~~vy~~~~~g~l~ald~~---------------------------------tG~~~W~~~--~~~~~~~~-- 291 (394)
T PRK11138 250 T-TPVVVGGVVYALAYNGNLVALDLR---------------------------------SGQIVWKRE--YGSVNDFA-- 291 (394)
T ss_pred C-CcEEECCEEEEEEcCCeEEEEECC---------------------------------CCCEEEeec--CCCccCcE--
Confidence 0 000124456667788999999987 222221111 01111111
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEee
Q 003208 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 266 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
..+..++.++.++.+..+|..+++.. ... ....+ ....+....++.++.++.||.+.+.|. +|+.+.+.+
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~------W~~--~~~~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVEL------WSQ--SDLLH-RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEE------Ecc--cccCC-CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 24567888889999999999876541 000 00011 111222334788999999999999999 888887776
Q ss_pred cccCCceEE-EEEccCCCEEEEEeCCCcEEEEec
Q 003208 345 EHIGRGIWR-CLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 345 ~h~~~~i~~-~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.... .+.+ ..+ .+..|+.++.||.|..++.
T Consensus 363 ~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 363 VDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 5433 2332 222 2347888899999988764
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.24 E-value=0.00015 Score=67.84 Aligned_cols=188 Identities=8% Similarity=0.052 Sum_probs=119.7
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC-CCE
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSK 270 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~ 270 (839)
...+||.|+..|...+|.+.+ ....+.....|...|.-+.=..+ .-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~t--------------------------------n~~h~~~cd~snn~v~~~~r~cd~~~~ 130 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNT--------------------------------NDGHLYQCDVSNNDVTLVKRYCDLKFP 130 (344)
T ss_pred cccEEEeccccceeeeecccC--------------------------------cccceeeecccccchhhhhhhcccccc
Confidence 456899999999999999872 11223333344443332221112 234
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc--ceEEeEEC--CCEEEEEeCCCeEEEEcC--CCceEEE-e
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKM-I 343 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~~~~-~ 343 (839)
+..++.|.++++.++..... ....|.. .+.+++++ +.++++.+....|..|.+ +++.+.. .
T Consensus 131 ~~i~sndht~k~~~~~~~s~------------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~ 198 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSN------------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY 198 (344)
T ss_pred eeeccCCcceeEEEEecCcc------------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE
Confidence 77888999999999887654 2223333 36778887 688999999999999988 4444433 2
Q ss_pred ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc--CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcc
Q 003208 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF--LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421 (839)
Q Consensus 344 ~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (839)
.......-.+..|+.....+|++..||++.+||++.. +..+. ...-+.|++.
T Consensus 199 ~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~--------------------------sstrp~hnGa 252 (344)
T KOG4532|consen 199 EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI--------------------------SSTRPHHNGA 252 (344)
T ss_pred ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh--------------------------cccCCCCCCc
Confidence 2233334578889999999999999999999999652 11110 0111236678
Q ss_pred eEEEEEecCC---eEEEEeccceEEEEEecC
Q 003208 422 VRCLHLTSED---TLYIATNHGYLYHTKLCD 449 (839)
Q Consensus 422 v~~~~~~~~~---~~~~~~~~g~i~~~~~~~ 449 (839)
++.+.|++-| .++.+-.-+.+...++.+
T Consensus 253 ~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 253 FRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 9999999754 344444455555444443
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.8e-05 Score=79.07 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=156.6
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~ 167 (839)
..+.++-||.++.|.-.... -.+.+..+..|-..|.+++.+- ++.++.|.+. |..++++|+++-
T Consensus 22 fiiqASlDGh~KFWkKs~is------------GvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS------------GVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred eEEeeecchhhhhcCCCCcc------------ceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEeecc
Confidence 67777889999999876422 0466778888999999999998 9999999777 999999999876
Q ss_pred ceEEEEecC---C-ceeEEEEeeccCCccc-eEEE-EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 168 SIILEVHSP---E-RCLLYSMKLWGDNLEA-LRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 168 ~~~~~~~~~---~-~~~~~s~~~~~~~~~~-~~l~-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
..+..++.. . .+.+++ ..+. ..|+ +.-.++.|.++|-..
T Consensus 87 DminmiKL~~lPg~a~wv~s------kGd~~s~IAVs~~~sg~i~VvD~~~----------------------------- 131 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS------KGDKISLIAVSLFKSGKIFVVDGFG----------------------------- 131 (558)
T ss_pred chhhhcccccCCCceEEecC------CCCeeeeEEeecccCCCcEEECCcC-----------------------------
Confidence 554333311 1 111111 1111 1333 344578999999761
Q ss_pred ccccc-eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCc--e---eeeceEeeccccceEEeE
Q 003208 242 QQHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI--E---EVGSSVLYGHNARVWDCC 315 (839)
Q Consensus 242 ~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~---~~~~~~~~~h~~~v~~~~ 315 (839)
.. +....-.-|..+|.++.+++.+..++|....|.|..|.....-+.....+ + +...+..........++.
T Consensus 132 ---d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 132 ---DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred ---CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 22 23333456999999999999999999999999999999874111000000 0 000012223344567788
Q ss_pred EC--CCEEEEEeCCCeEEEEcC-CCceEEEe--------------------------------ecccCCceEEEEEccCC
Q 003208 316 LT--DSFIITAGEDCTCRVWGS-DGKQLKMI--------------------------------KEHIGRGIWRCLYDSLS 360 (839)
Q Consensus 316 ~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~--------------------------------~~h~~~~i~~~~~~~~~ 360 (839)
|+ +..+.+-+.|..|++++. .|+.+..+ ..|....-+.+.|+..+
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~ 288 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG 288 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC
Confidence 87 688999999999999998 55432222 11222234567888888
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 003208 361 SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 361 ~~l~t~~~dg~i~iw~~~~ 379 (839)
++|+-|+.=| |++.++..
T Consensus 289 ~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 289 NFLLYGTILG-IKVINLDT 306 (558)
T ss_pred CEEEeeccee-EEEEEeec
Confidence 8888887664 78888754
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=0.0059 Score=57.26 Aligned_cols=158 Identities=9% Similarity=0.041 Sum_probs=92.7
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec--CCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
+.|.+-+.. -++.++.|...|.+.+.+..++.....+.. ..++... + ++++.+|..|+.|++.+..|.
T Consensus 53 ~RiE~sa~v----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~-~-----d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 53 VRIECSAIV----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ-C-----DFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred ceeeeeeEE----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE-E-----cCCCceEEEecCCCcEEEecc
Confidence 345444443 356789999999999999999977655542 2222221 1 468899999999999999999
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
+ +...+...+-..+.-.+=+..|-...|+.+...|.+.--+.+....
T Consensus 123 ~---------------------------------~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~ 169 (354)
T KOG4649|consen 123 K---------------------------------TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSS 169 (354)
T ss_pred c---------------------------------ccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCc
Confidence 8 5556655443222222233445333455555555554444433321
Q ss_pred CCCCCceeeeceEeecc--ccceEEe-EECCCEEEEEeCCCeEEEEcCCCceEEEee
Q 003208 291 KDSDSIEEVGSSVLYGH--NARVWDC-CLTDSFIITAGEDCTCRVWGSDGKQLKMIK 344 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h--~~~v~~~-~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 344 (839)
. .+..| .++|.+- .+.+..+..+.-||.+.-++-.|+.+.++.
T Consensus 170 ------~-----~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~ 215 (354)
T KOG4649|consen 170 ------T-----EFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPA 215 (354)
T ss_pred ------c-----eehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeec
Confidence 1 22222 2334332 222456666777888888887676666443
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=7.2e-06 Score=79.06 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=108.0
Q ss_pred EEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCC
Q 003208 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 151 as~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 230 (839)
++.+.+..|-+-|++++.... +. ..+-+++..|+ ..++++..|...|.|...|++..-+
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~--sksDVfAlQf~---~s~nLv~~GcRngeI~~iDLR~rnq--------------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ--SKSDVFALQFA---GSDNLVFNGCRNGEIFVIDLRCRNQ--------------- 286 (425)
T ss_pred ecccccceeEEEEeecccccc-cc--cchhHHHHHhc---ccCCeeEecccCCcEEEEEeeeccc---------------
Confidence 455567788888888764321 11 23345666663 4577999999999999999983211
Q ss_pred CCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc
Q 003208 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (839)
..+.+.+.+ -|...|+++..-. ++.+|++.+.+|+|++||++.-+. .+-+ ....||-.
T Consensus 287 -------------G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----~~~V--~qYeGHvN 345 (425)
T KOG2695|consen 287 -------------GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----KKSV--MQYEGHVN 345 (425)
T ss_pred -------------CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-----ccce--eeeecccc
Confidence 123344444 3889999988766 778999999999999999987654 1212 36677755
Q ss_pred ceEEeEEC----CCEEEEEeCCCeEEEEcC-CCceEEEeecc
Q 003208 310 RVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (839)
Q Consensus 310 ~v~~~~~~----~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h 346 (839)
.-.-+-++ ...++++|.|...|||.+ .|..+.+++..
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 43333333 578999999999999999 78888777644
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.17 E-value=0.00036 Score=69.46 Aligned_cols=209 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred CcCccccccCCCceee------eeeEE---EEecCCCCCCCcceEEEe-eCCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 3 KKDLSEWRLDVGQYLG------EISAL---CFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 3 d~~i~~w~~~~~~~~~------~Vt~l---~f~~~~~~~~~~~~l~~g-~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+++|..||..+++..= ++... .+ ++ +..++++ .++.|+.||..+|+.+.++..... +....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~---~~----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~ 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV---PD----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAP 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE---EE----TTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE---Ee----CCEEEEEcCCCEEEEEECCCCCEEEEeecccc--cccee
Confidence 6788889988876111 12211 22 22 3445554 589999999999999988886332 22221
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEe-ccCCC---cceEEEEEeeccCCCc
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLS---HWVFDVCFLKVCNGNR 148 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~---~~I~~~~~~~~~~~~~ 148 (839)
.. .++ .+++...++.+..+|..++. .+.. ..... .......... .++
T Consensus 73 ~~-------~~~----~v~v~~~~~~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~~~~---~~~ 123 (238)
T PF13360_consen 73 VV-------DGG----RVYVGTSDGSLYALDAKTGK---------------VLWSIYLTSSPPAGVRSSSSPAV---DGD 123 (238)
T ss_dssp EE-------ETT----EEEEEETTSEEEEEETTTSC---------------EEEEEEE-SSCTCSTB--SEEEE---ETT
T ss_pred ee-------ccc----ccccccceeeeEecccCCcc---------------eeeeeccccccccccccccCceE---ecC
Confidence 11 233 66777778888888876533 3332 11110 1122333333 567
Q ss_pred EEEEEeCCCcEEEEecCCCceEEEEecCCcee----------EEEEeeccCCccceEEEEeecCCeEEEEEeeccccccC
Q 003208 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCL----------LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 149 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~----------~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~ 218 (839)
.++.+..++.|..+|+.+++.+.......... ...+.+ .++ .++.++.++.+..+|..
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~g~~~~~d~~------- 191 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDG-RVYVSSGDGRVVAVDLA------- 191 (238)
T ss_dssp EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTT-EEEEECCTSSEEEEETT-------
T ss_pred EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE----ECC-EEEEEcCCCeEEEEECC-------
Confidence 78888889999999999999987776433110 111221 234 66666667754434877
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
+++.+-... ...+..+ ...++..++.++.++.+..||+.+++.
T Consensus 192 --------------------------tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 --------------------------TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp --------------------------TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred --------------------------CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 444332222 2223332 345777888888999999999998764
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=1.6e-05 Score=76.76 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=109.6
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC--
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-- 167 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-- 167 (839)
.++++.+..|-+-+++++- .+.+. ....|.++.|+. .++++..|...|.|.+.|++.+
T Consensus 227 hfs~G~sqqv~L~nvetg~----------------~qsf~-sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGH----------------QQSFQ-SKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred eecccccceeEEEEeeccc----------------ccccc-cchhHHHHHhcc---cCCeeEecccCCcEEEEEeeeccc
Confidence 3555556667777766532 12222 456789999987 8899999999999999999754
Q ss_pred ---ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 168 ---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 168 ---~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
.+...+-. .+.+.++.... -++.+|++.+-+|.|.+||++.- .
T Consensus 287 G~~~~a~rlyh--~Ssvtslq~Lq--~s~q~LmaS~M~gkikLyD~R~~------------------------------K 332 (425)
T KOG2695|consen 287 GNGWCAQRLYH--DSSVTSLQILQ--FSQQKLMASDMTGKIKLYDLRAT------------------------------K 332 (425)
T ss_pred CCCcceEEEEc--Ccchhhhhhhc--cccceEeeccCcCceeEeeehhh------------------------------h
Confidence 33333322 22244444322 24678888899999999999810 0
Q ss_pred cceeeEEEecCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 245 TAVNLFRLVGHEGSIFRIE--WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
.++-+....||.+.-.-+- ..+....++++++|...|||.++.+.. ...++ +........+++++|.
T Consensus 333 ~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-----l~tip-f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 333 CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-----LCTIP-FPYSASEVDIPSVAFD 401 (425)
T ss_pred cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce-----eeccC-CCCccccccccceehh
Confidence 2233778888876544443 356677899999999999999998876 33222 1222233345666665
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.05 E-value=8.4e-05 Score=81.06 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=126.3
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~ 115 (839)
.++..|-...+..+|+.++++.+......+ .|.=|.-+ ++ .++++...|+|.+-|...
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~N---------nr---~lf~G~t~G~V~LrD~~s--------- 206 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYN---------NR---NLFCGDTRGTVFLRDPNS--------- 206 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCC-ceEEEEec---------Cc---EEEeecccceEEeecCCc---------
Confidence 455555567788899999888887776554 35555543 21 444445579999999875
Q ss_pred CccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC---------CCcEEEEecCCCceEEEEecCCceeEEEEee
Q 003208 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSIILEVHSPERCLLYSMKL 186 (839)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~ 186 (839)
.+.++++..|++.|.++.+ .|++|+++|. |..|+|||++..+.+.-+..+..... +.|
T Consensus 207 ------~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f--lrf 273 (1118)
T KOG1275|consen 207 ------FETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF--LRF 273 (1118)
T ss_pred ------Cceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh--hhh
Confidence 7889999999999998877 6789999876 66789999988776655544333211 222
Q ss_pred ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC
Q 003208 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (839)
Q Consensus 187 ~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 266 (839)
+ +.-...+++.+..|...+-|..+ |.. ....+..+..-...+..+.+++
T Consensus 274 ~--Psl~t~~~V~S~sGq~q~vd~~~---------------------------lsN--P~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 274 H--PSLTTRLAVTSQSGQFQFVDTAT---------------------------LSN--PPAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred c--ccccceEEEEecccceeeccccc---------------------------cCC--CccceeEEccCCCcceeEEecC
Confidence 2 12245677788889988888430 000 0111112222234589999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 003208 267 CGSKLVSVSDDRSARIWEV 285 (839)
Q Consensus 267 ~~~~l~s~s~d~~i~iwd~ 285 (839)
++..++.+..+|.|.+|.-
T Consensus 323 n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 323 NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCceEEEecccCcEeeecC
Confidence 9999999999999999983
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.01 E-value=0.021 Score=57.01 Aligned_cols=211 Identities=13% Similarity=0.027 Sum_probs=121.0
Q ss_pred eEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEe-eccCCCcEEEEEeCCCcEEEEecCC
Q 003208 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL-KVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 89 ~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~-~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
.++.+. ..+.|..|+..... .....+.+ ...+++. + ++ .|+.+... .+.++|..+
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~--------------~~~~~~~~----~~G~~~~~~---~g-~l~v~~~~-~~~~~d~~~ 69 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGE--------------VEVIDLPG----PNGMAFDRP---DG-RLYVADSG-GIAVVDPDT 69 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------------EEEEESSS----EEEEEEECT---TS-EEEEEETT-CEEEEETTT
T ss_pred EEEEEEcCCCEEEEEECCCCe--------------EEEEecCC----CceEEEEcc---CC-EEEEEEcC-ceEEEecCC
Confidence 455554 47888888876532 12222222 6778887 4 54 45555544 456669888
Q ss_pred CceEEEEec---C-CceeEEEEeeccCCccceEEEEeecC--------CeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 167 SSIILEVHS---P-ERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 167 ~~~~~~~~~---~-~~~~~~s~~~~~~~~~~~~l~sg~~d--------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
++....... . .......+.+ +++|.+.++.... |.|..++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----------------------- 123 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAV---DPDGNLYVTDSGGGGASGIDPGSVYRIDPD----------------------- 123 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE----TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------------------
T ss_pred CcEEEEeeccCCCcccCCCceEEE---cCCCCEEEEecCCCccccccccceEEECCC-----------------------
Confidence 755433332 1 2223334443 5667666654332 233333332
Q ss_pred eeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcccCccCCCCCceeeece-EeeccccceE
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVW 312 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~ 312 (839)
.+ +..+...-...+.|+|+|+++.|+ +-+..+.|..+++...... +.....+ .+..-....-
T Consensus 124 -----------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 124 -----------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp -----------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC----EEEEEEEEE-SSSSCEEE
T ss_pred -----------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc----eeeeeeEEEcCCCCcCCC
Confidence 11 222222345678999999998775 5667788888888643320 1111101 1222223467
Q ss_pred EeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEE-ccCCCEEEE
Q 003208 313 DCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLLVT 365 (839)
Q Consensus 313 ~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~-~~~~~~l~t 365 (839)
.+++. +++.++....+.|.+++.+|+.+..+..... .+++++| .++.+.|+.
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP-RPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS-SEEEEEEESTTSSEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC-CEEEEEEECCCCCEEEE
Confidence 78887 6777777788999999999999988887744 5899999 466555443
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00012 Score=78.90 Aligned_cols=184 Identities=14% Similarity=0.048 Sum_probs=127.1
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
.+.+.|++++ +..++-|+-+|.|++.+....- .+...+..+ ..+|.++++++.||.|.|-.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecCCcc--ccccccccc----------ccCCceEEEecCCCcEEEeecc
Confidence 4678888884 4789999999999999875332 222222111 3679999999999999999987
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEcc
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----GSKLVSVSDDRSARIWEVR 286 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~s~d~~i~iwd~~ 286 (839)
+.+....+. ...++.+|+++|+ .+++++|+..| +.++.-+
T Consensus 102 ---------------------------------~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 102 ---------------------------------TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ---------------------------------CCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 444444443 3478999999997 56899999988 7776533
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCC-----ceEEEEEccCC
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLS 360 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~-----~i~~~~~~~~~ 360 (839)
--.. .....+..-.++|.++.|.+++++-++.+| |+|||. .++.+..+...... --..+.|.++.
T Consensus 147 wlgn--------k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 147 WLGN--------KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred hhcC--------ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence 2111 011245556789999999999999999887 899999 66666555443321 12346676654
Q ss_pred CEEEEEeCCCcEEEEecC
Q 003208 361 SLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 361 ~~l~t~~~dg~i~iw~~~ 378 (839)
.|+.|-.| +|++..++
T Consensus 218 -~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 218 -RLVIGWGD-SVKICSIK 233 (846)
T ss_pred -eEEEecCC-eEEEEEEe
Confidence 45555544 89998886
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.93 E-value=0.006 Score=60.35 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=117.5
Q ss_pred eEEEEEeeccCCCcEEEEEeCCCc-EEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee-----cCCeEEEE
Q 003208 135 VFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-----IYNEIIVW 208 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~-----~dg~i~vw 208 (839)
...++.+| .....++.+-..|+ ..+||..+++....+..+..--.|.-.. ++++|.+|++.- ..|.|-||
T Consensus 7 gH~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEEeccccCCCcEEEEEE
Confidence 34567777 23445666666554 6789999999988887655433333222 268999998843 34889999
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC------------
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------------ 276 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------------ 276 (839)
|.. ...+.+.++..|.-....+.+.||++.|+.+-.
T Consensus 83 d~~--------------------------------~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 83 DAA--------------------------------RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred ECc--------------------------------CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee
Confidence 987 145667778777777778889999987777531
Q ss_pred ------CCcEEEEEcccCccCCCCCceeeeceEe--eccccceEEeEEC-CCEEEEEeCC-C-------eEEEEcCCCce
Q 003208 277 ------DRSARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT-DSFIITAGED-C-------TCRVWGSDGKQ 339 (839)
Q Consensus 277 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~-~~~l~s~~~d-g-------~i~vw~~~~~~ 339 (839)
+-++.+-|..+++. ++. ..+ .-|.-.|..+++. ...++.+... | .+-+++. ++.
T Consensus 131 LNl~tM~psL~~ld~~sG~l-----l~q---~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~ 201 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGAL-----LEQ---VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGA 201 (305)
T ss_pred cChhhcCCceEEEecCCCce-----eee---eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCc
Confidence 22233334444333 111 123 3355567777766 2223222211 1 1222222 111
Q ss_pred EEEee-------cccCCceEEEEEccCCCEE-EEEeCCCcEEEEecCC
Q 003208 340 LKMIK-------EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (839)
Q Consensus 340 ~~~~~-------~h~~~~i~~~~~~~~~~~l-~t~~~dg~i~iw~~~~ 379 (839)
+..+. ...+ .+-+|++++++..+ +|+-..+.+.+||...
T Consensus 202 ~~~~~~p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred ceeccCChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 11111 1223 47799999999866 4555678999998854
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.92 E-value=0.012 Score=58.18 Aligned_cols=210 Identities=12% Similarity=0.120 Sum_probs=119.5
Q ss_pred eEEEEecCCCCCCCcceEEEee--CCeeEEEECCCCeeeeEEeeecCceEE-eEEecccccccCCCccceeeEEEEE---
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALF--- 94 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~~~~~~~~~~~l~~~--- 94 (839)
-+++.+ |. ....++.+- +....+||..+|+.+..+....+---. .-.|+ +||+ .++++=
T Consensus 8 H~~a~~--p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-------~dG~---~LytTEnd~ 72 (305)
T PF07433_consen 8 HGVAAH--PT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-------PDGR---LLYTTENDY 72 (305)
T ss_pred cceeeC--CC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-------CCCC---EEEEecccc
Confidence 466777 75 245555566 679999999999998888754432122 24677 8984 555553
Q ss_pred --cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-----------------
Q 003208 95 --GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS----------------- 155 (839)
Q Consensus 95 --~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~----------------- 155 (839)
+.|.|-|||... . .+.+.++..|.-.-..+.+.| +++.|+++-.
T Consensus 73 ~~g~G~IgVyd~~~-~-------------~~ri~E~~s~GIGPHel~l~p---DG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 73 ETGRGVIGVYDAAR-G-------------YRRIGEFPSHGIGPHELLLMP---DGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred CCCcEEEEEEECcC-C-------------cEEEeEecCCCcChhhEEEcC---CCCEEEEEcCCCccCcccCceecChhh
Confidence 358999999982 2 677788888876677888999 9977766521
Q ss_pred -CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 156 -DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 156 -d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
+..+.+-|..+++.+.+..-+..---.|+.-.....++..++..-..| ..... .+.
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg-------~~~~~-----~PL----------- 192 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG-------DPGDA-----PPL----------- 192 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC-------CCCcc-----CCe-----------
Confidence 223555566666666554322111111111111133333333221111 00000 000
Q ss_pred eeeEeecccccceeeEE-------EecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCcc
Q 003208 235 KCFKLQDQQHTAVNLFR-------LVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYW 290 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-------~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~ 290 (839)
+-++.. ...+.. ...-.+.|-+|++++++..++..| .-+.+.+||..++..
T Consensus 193 --va~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 193 --VALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred --EEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 000110 011111 123347889999999998775544 667899999998765
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.91 E-value=0.023 Score=56.68 Aligned_cols=217 Identities=9% Similarity=0.063 Sum_probs=125.3
Q ss_pred EEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEE
Q 003208 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 100 (839)
+++|. +. .+.++++.. ++.|..|+..+++... +.. . ...++++.. +++ .++++.. +.+.
T Consensus 4 gp~~d--~~---~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~-~~~G~~~~~------~~g----~l~v~~~-~~~~ 63 (246)
T PF08450_consen 4 GPVWD--PR---DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--P-GPNGMAFDR------PDG----RLYVADS-GGIA 63 (246)
T ss_dssp EEEEE--TT---TTEEEEEETTTTEEEEEETTTTEEEE-EES--S-SEEEEEEEC------TTS----EEEEEET-TCEE
T ss_pred ceEEE--CC---CCEEEEEEcCCCEEEEEECCCCeEEE-Eec--C-CCceEEEEc------cCC----EEEEEEc-CceE
Confidence 45666 63 266777765 7999999998876432 232 2 266777761 344 5555555 4445
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEec--cC-CCcceEEEEEeeccCCCcEEEEEeCC--------CcEEEEecCCCce
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSL--PR-LSHWVFDVCFLKVCNGNRSLAIGCSD--------NSIRVWDISNSSI 169 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~I~~~~~~~~~~~~~~las~~~d--------~~i~vwd~~~~~~ 169 (839)
++|+.... .+.+... .. .....+++++.| +|++.++.... +.|..++.. ++.
T Consensus 64 ~~d~~~g~-------------~~~~~~~~~~~~~~~~~ND~~vd~---~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 64 VVDPDTGK-------------VTVLADLPDGGVPFNRPNDVAVDP---DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EEETTTTE-------------EEEEEEEETTCSCTEEEEEEEE-T---TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EEecCCCc-------------EEEEeeccCCCcccCCCceEEEcC---CCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 55776533 3444443 22 346788999999 99977775543 446666666 443
Q ss_pred EEEEecCCceeEEEEeeccCCccceEE-EEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l-~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
......-. ....+.+ ++++..| ++-+..+.|..+++....... ...+.
T Consensus 127 ~~~~~~~~--~pNGi~~---s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--------------------------~~~~~ 175 (246)
T PF08450_consen 127 TVVADGLG--FPNGIAF---SPDGKTLYVADSFNGRIWRFDLDADGGEL--------------------------SNRRV 175 (246)
T ss_dssp EEEEEEES--SEEEEEE---ETTSSEEEEEETTTTEEEEEEEETTTCCE--------------------------EEEEE
T ss_pred EEEecCcc--cccceEE---CCcchheeecccccceeEEEeccccccce--------------------------eeeee
Confidence 22222111 1123333 4777655 466777888888886211000 01222
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
+..+..-.+..-.+++..+|+..++....+.|.+++.+ ++. .. .+.-....+++++|.
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-----~~-----~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-----LR-----EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-----EE-----EEE-SSSSEEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-----EE-----EEcCCCCCEEEEEEE
Confidence 33333333458899999999988888888999999988 433 22 222223478999995
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.89 E-value=0.021 Score=60.56 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=61.9
Q ss_pred ccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEe
Q 003208 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRS 657 (839)
Q Consensus 578 ~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s 657 (839)
...+.|.|++++|+...|+.|..||+|.+||...+.. .. ....-..+.++|+ +++..++.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t------------~~-----~ka~~~P~~iaWH---p~gai~~V 316 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT------------LL-----AKAEFIPTLIAWH---PDGAIFVV 316 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee------------ee-----eeecccceEEEEc---CCCcEEEE
Confidence 5677899999999999999999999999999875310 00 0111247899999 88999999
Q ss_pred ecCcCcEEEEEEecCCc
Q 003208 658 TGGDGCICYLEYDKDRE 674 (839)
Q Consensus 658 ~~~Dg~i~iw~~~~~~~ 674 (839)
++.-|.+.+||+..+..
T Consensus 317 ~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 317 GSEQGELQCFDMALSPI 333 (545)
T ss_pred EcCCceEEEEEeecCcc
Confidence 99999999999876543
No 316
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0018 Score=69.29 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=97.9
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecc
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~ 213 (839)
.|.=-++.. .+++++.|+.-|.+.+|+...++....-............. +++..++|.|+..|.|.++-+..
T Consensus 35 ~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---s~~e~lvAagt~~g~V~v~ql~~- 107 (726)
T KOG3621|consen 35 RVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---SSVEYLVAAGTASGRVSVFQLNK- 107 (726)
T ss_pred eEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---cchhHhhhhhcCCceEEeehhhc-
Confidence 343334444 88999999999999999987766543322212222223333 56778889999999999998873
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCC
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
...+ ....+... +.|...|++++|++++..+++|...|+|.+-.++....
T Consensus 108 ~~p~---------------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~-- 158 (726)
T KOG3621|consen 108 ELPR---------------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA-- 158 (726)
T ss_pred cCCC---------------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh--
Confidence 1111 11111111 23889999999999999999999999999988877311
Q ss_pred CCCceeeeceEeeccccceEEeEECCCEEEEEe
Q 003208 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~ 325 (839)
-......+..-.+.|..+.+...+++...
T Consensus 159 ----~~~~~q~il~~ds~IVQlD~~q~~LLVSt 187 (726)
T KOG3621|consen 159 ----FLSKSQEILSEDSEIVQLDYLQSYLLVST 187 (726)
T ss_pred ----hccccceeeccCcceEEeecccceehHhh
Confidence 00000134445667777777755544443
No 317
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.81 E-value=0.029 Score=58.51 Aligned_cols=185 Identities=12% Similarity=0.118 Sum_probs=114.3
Q ss_pred CcEEEEecCCCceEEEEecCCceeEEEEeeccCCc----cceEEEEeec----------CCeEEEEEeeccccccCCCCC
Q 003208 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL----EALRIASGTI----------YNEIIVWKVDWEHVAPLLNSP 222 (839)
Q Consensus 157 ~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~----~~~~l~sg~~----------dg~i~vw~~~~~~~~~~~~~~ 222 (839)
..|++.|..+.+.+.++.-+..-.+.++..+.... ...+|+.|+. .|.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~~---- 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---PE---- 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---cc----
Confidence 35888888888887776644444455555544333 2577887764 288999998821 00
Q ss_pred CCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeece
Q 003208 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 302 (839)
.....+.++.. ...++|++|+-- ++ +|+.+. .+.|.+|++..... +.. .
T Consensus 75 -------------------~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~-----l~~---~ 123 (321)
T PF03178_consen 75 -------------------NNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT-----LLK---K 123 (321)
T ss_dssp ----------------------EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS-----EEE---E
T ss_pred -------------------cceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc-----chh---h
Confidence 00011222222 357889998866 33 444444 37899999988761 111 1
Q ss_pred EeeccccceEEeEECCCEEEEEeCCCeEEEEcC--CCceEEEeec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 303 ~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~--~~~~~~~~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
........+.++...+++++.|.....+.++.. ..+.+..+.. .....++++.+-++++.++.+..+|.+.++....
T Consensus 124 ~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred heecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 333334477888877899999999888888755 4443444433 2223577888876667999999999999998854
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.77 E-value=0.006 Score=65.52 Aligned_cols=191 Identities=11% Similarity=0.054 Sum_probs=107.2
Q ss_pred eeeEEEEecCCCCCCCcc-eEE-Eee---CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 19 EISALCFVHLPSHLSSLP-FLL-AGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~-~l~-~g~---~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
.+..-+|+ || ++ +++ +.. ...|.++|+.+|+...... ..+ ......|+ |||+ .++.+
T Consensus 189 ~~~~p~wS--pD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~S-------PDG~---~la~~ 250 (419)
T PRK04043 189 LNIFPKWA--NK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVS-------KDGS---KLLLT 250 (419)
T ss_pred CeEeEEEC--CC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEEC-------CCCC---EEEEE
Confidence 45678899 99 54 344 333 3679999998887544333 333 35566788 9985 33332
Q ss_pred -E--cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CC--cEEEEecCCC
Q 003208 94 -F--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNS 167 (839)
Q Consensus 94 -~--~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~--~i~vwd~~~~ 167 (839)
. ++..|.++++..+. .+. +..+........|+| +|+.|+-.+. .+ .|.+.|+.++
T Consensus 251 ~~~~g~~~Iy~~dl~~g~-------------~~~---LT~~~~~d~~p~~SP---DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTKT-------------LTQ---ITNYPGIDVNGNFVE---DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EccCCCcEEEEEECCCCc-------------EEE---cccCCCccCccEECC---CCCEEEEEECCCCCceEEEEECCCC
Confidence 2 23567777765422 222 222322233457999 9987776553 22 6788888777
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecC---------CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeE
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (839)
+..+........ .. .+|++..|+..... ..|.+.|+.
T Consensus 312 ~~~rlt~~g~~~----~~---~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~--------------------------- 357 (419)
T PRK04043 312 SVEQVVFHGKNN----SS---VSTYKNYIVYSSRETNNEFGKNTFNLYLISTN--------------------------- 357 (419)
T ss_pred CeEeCccCCCcC----ce---ECCCCCEEEEEEcCCCcccCCCCcEEEEEECC---------------------------
Confidence 653332221111 12 26888887765543 256666665
Q ss_pred eecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEEcccC
Q 003208 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R--SARIWEVRAE 288 (839)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~--~i~iwd~~~~ 288 (839)
.+. ...+... +......|+|||+.|+-.+.+ + .+.+.++...
T Consensus 358 ------~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 ------SDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred ------CCC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 222 1222222 222357899999987665543 2 3555666553
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00028 Score=70.89 Aligned_cols=216 Identities=16% Similarity=0.147 Sum_probs=132.0
Q ss_pred eeccccceEEeEEC-CCEEEEEeCCCeEEEEcCCC----ceEEEeecccCCceEEEEEccCCCEEEEEeC-CCcEEEEec
Q 003208 304 LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (839)
Q Consensus 304 ~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~----~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~-dg~i~iw~~ 377 (839)
.+-|...|+.+... .+++.+++.||.++.|.... +.+..+..|.+ .|.+++.+.++.++.|++. |..++++|+
T Consensus 5 symhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEe
Confidence 45677788877766 78999999999999999843 34556677877 6899999999999999887 999999998
Q ss_pred CCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeE
Q 003208 378 QAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456 (839)
Q Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 456 (839)
... .+.. +..+..++........+..+..++.+. ..+|.+..++-...... .
T Consensus 84 En~Dminm------------------iKL~~lPg~a~wv~skGd~~s~IAVs~-------~~sg~i~VvD~~~d~~q--~ 136 (558)
T KOG0882|consen 84 ENFDMINM------------------IKLVDLPGFAEWVTSKGDKISLIAVSL-------FKSGKIFVVDGFGDFCQ--D 136 (558)
T ss_pred eccchhhh------------------cccccCCCceEEecCCCCeeeeEEeec-------ccCCCcEEECCcCCcCc--c
Confidence 541 1111 011111121111122222233333221 23455544432221110 1
Q ss_pred EEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeecccee--------EEeeEE
Q 003208 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER--------QLLGTY 528 (839)
Q Consensus 457 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 528 (839)
.....-+..++.++...+.. ..+++....|.|.-|.....-+.+...+ .|...++. +-....
T Consensus 137 ~~fkklH~sPV~~i~y~qa~--------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l--~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAG--------DSAVSIDISGMVEYWSAEGPFQFPRTNL--NFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred ceecccccCceEEEEeeccc--------cceeeccccceeEeecCCCcccCccccc--cccccccchhhcccccccCccc
Confidence 22333446778888776654 6788888899999998764222222111 11111111 111122
Q ss_pred EeecCCCeEEEEeCCCCcEEEeeecCCCC
Q 003208 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFS 557 (839)
Q Consensus 529 ~~~s~~~~~l~s~~~dg~i~~wd~~~~~~ 557 (839)
.+++|++..+.+-+.|.+|++++..+++.
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchh
Confidence 57899999999999999999999988754
No 320
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.038 Score=58.40 Aligned_cols=260 Identities=13% Similarity=0.123 Sum_probs=132.5
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCC-CC------CC---------Ccc------------
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN-SQ------YQ---------PET------------ 118 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~-~~------~~---------~~~------------ 118 (839)
.|+.|.|+ ++.. .+.++...|.|.||.+...+..+ .. +. ++.
T Consensus 3 ~v~~vs~a-------~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFA-------PETL---ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEE-------TTTT---EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEec-------CCCc---eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccc
Confidence 47888888 5542 66666778999999987643222 00 00 110
Q ss_pred ccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC-------Cc----eeEEEEeec
Q 003208 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-------ER----CLLYSMKLW 187 (839)
Q Consensus 119 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~-------~~----~~~~s~~~~ 187 (839)
...+.+..-++...++|++++.+ +-.++|.|..+|.+.|.|++....+..-... .. ++-|++.-.
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred ccccCchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 01234455566668999999997 5568999999999999999988887764311 12 222332221
Q ss_pred -cCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEE-Ec
Q 003208 188 -GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE-WS 265 (839)
Q Consensus 188 -~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~-~~ 265 (839)
........+++|+..|.+.+|.+.-.... ............+.+.|..|. ++
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g--------------------------~f~v~~~~~~~~~~~~i~~I~~i~ 202 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNG--------------------------RFSVQFAGATTNHDSPILSIIPIN 202 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG---------------------------EEEEEEEEE--SS----EEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCC--------------------------ceEEEEeeccccCCCceEEEEEEE
Confidence 22233478999999999999998610000 001112222234555555554 32
Q ss_pred CC-----------------C---CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEE-------CC
Q 003208 266 SC-----------------G---SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-------TD 318 (839)
Q Consensus 266 ~~-----------------~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~ 318 (839)
.+ + +.++....+..+|++...+.+. .. ...........+.+ .+
T Consensus 203 ~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~-----~~-----K~~~~~~~~~~~~vv~~~~~~~~ 272 (395)
T PF08596_consen 203 ADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG-----AH-----KSFDDPFLCSSASVVPTISRNGG 272 (395)
T ss_dssp TTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E-----EE-----EE-SS-EEEEEEEEEEEE-EEEE
T ss_pred CCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc-----cc-----eeeccccccceEEEEeecccCCc
Confidence 21 0 1244444567899999877544 11 11121112222223 24
Q ss_pred CEEEEEeCCCeEEEEcC-CCceEEEeecccC---CceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 319 ~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~---~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
..|++-..+|.++++.+ .-+.+..+..+.. +.+....++++|..++-.+.. .+.++.+
T Consensus 273 ~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 273 YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred eEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 67888889999999999 7777766655321 123345678888876665543 4555554
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0011 Score=71.95 Aligned_cols=187 Identities=10% Similarity=0.083 Sum_probs=115.5
Q ss_pred ccceEEeEECCCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcC
Q 003208 308 NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (839)
Q Consensus 308 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~ 386 (839)
...+.|+++++.+++-|..+|.+++.+..+.+ .+...|.. . ..+|.++++|+.||+|.+..+-+ ....
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~--~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSS--S-----ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-cccccccc--c-----ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 34577888889999999999999999997776 44445544 1 66899999999999999988732 2111
Q ss_pred CCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecC------CeEEEEeccceEEEE-EecCCCCceeEEEe
Q 003208 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHT-KLCDMDSVNWNKIL 459 (839)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~g~i~~~-~~~~~~~~~~~~~~ 459 (839)
.++. ..++.++++.|+ .++++++..| ++.+ +-|-. .|..+.
T Consensus 108 -------------~~df---------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg---nk~~v~ 155 (846)
T KOG2066|consen 108 -------------QYDF---------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG---NKDSVV 155 (846)
T ss_pred -------------eEec---------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc---Ccccee
Confidence 1111 135889999997 3677777777 5433 11111 123343
Q ss_pred eecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeecccee-EEeeEEEeecCCCeEE
Q 003208 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER-QLLGTYWCKSLGHRFI 538 (839)
Q Consensus 460 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l 538 (839)
-....+++.++.+.. +++|=++.+| |++||...++.....+... ...+ .......++.++ ..|
T Consensus 156 l~~~eG~I~~i~W~g----------~lIAWand~G-v~vyd~~~~~~l~~i~~p~----~~~R~e~fpphl~W~~~-~~L 219 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWRG----------NLIAWANDDG-VKVYDTPTRQRLTNIPPPS----QSVRPELFPPHLHWQDE-DRL 219 (846)
T ss_pred eecCccceEEEEecC----------cEEEEecCCC-cEEEeccccceeeccCCCC----CCCCcccCCCceEecCC-CeE
Confidence 444578888876533 6777777665 8999997765443322221 1110 011111233333 445
Q ss_pred EEeCCCCcEEEeeecC
Q 003208 539 FTADPKGRLKLWQLCD 554 (839)
Q Consensus 539 ~s~~~dg~i~~wd~~~ 554 (839)
+.| ...+|++..+..
T Consensus 220 VIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 220 VIG-WGDSVKICSIKK 234 (846)
T ss_pred EEe-cCCeEEEEEEec
Confidence 555 345688888873
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.01 Score=65.18 Aligned_cols=202 Identities=9% Similarity=0.051 Sum_probs=119.4
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCC-----eEEEE
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-----EIIVW 208 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg-----~i~vw 208 (839)
.|.| +++ ++..+|.|+.+|.|.+.+-. .+.+..++....+++..+.. ..+..+|++-+.|+ .|++|
T Consensus 27 ~isc--~~s---~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISC--CSS---STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeE--EcC---CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhc---ccCceEEEEEeecCCCCceEEEEe
Confidence 4554 355 78899999999988887642 23334454444332222211 23335677755553 58999
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee--EEEec-----CCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL--FRLVG-----HEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
++...+.. ..+.++ +.+.+ -..++.+++.+.+-+.+++|-.+|.|.
T Consensus 98 ~lek~~~n---------------------------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~ 150 (933)
T KOG2114|consen 98 DLEKVDKN---------------------------NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI 150 (933)
T ss_pred cccccCCC---------------------------CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence 99721100 012222 12222 245688899999989999999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCce--EEEeecccCCceEEEEEc
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQ--LKMIKEHIGRGIWRCLYD 357 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~--~~~~~~h~~~~i~~~~~~ 357 (839)
.+.-+-..-. ..+ ......-..+|+.+++. +..++-......|.+|.++|+. ...+..|.. ++.|-.++
T Consensus 151 ~~~GDi~RDr---gsr---~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~-~lnCss~~ 223 (933)
T KOG2114|consen 151 CYKGDILRDR---GSR---QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI-SLNCSSFS 223 (933)
T ss_pred EEcCcchhcc---ccc---eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc-cceeeecC
Confidence 8864321110 011 01222335689999997 4332223334578999996655 444555555 68888888
Q ss_pred cCCCEEEEEeCCCcEEEEecCC
Q 003208 358 SLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+....+++++.. .+.+|+.++
T Consensus 224 ~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 224 DGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred CCCccEEEecCc-eEEEEcCCC
Confidence 766545555544 788998854
No 323
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.64 E-value=0.09 Score=54.83 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=116.8
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc----------C-cEEEEEEeeccCCCCC
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----------E-KRVKLFELNFELSPNS 112 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~----------~-~~i~iw~~~~~~~~~~ 112 (839)
+.|++.|..+.+.+.++.......+.+++.-... .+.+....+++++. . |.|.++++...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~----~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~----- 72 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLK----GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES----- 72 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEET----TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEc----CccccccCEEEEEecccccccccccCcEEEEEEEEcc-----
Confidence 4689999999999988887776677777655321 11000014555441 1 88999999863
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-eEEEEecCCceeEEEEeeccCCc
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNL 191 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~s~~~~~~~~ 191 (839)
+....+++.++... ..++|++++-. ++. |+.+. .+.|.+|++...+ .......+....+.++..
T Consensus 73 ---~~~~~~l~~i~~~~-~~g~V~ai~~~----~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~----- 137 (321)
T PF03178_consen 73 ---PENNFKLKLIHSTE-VKGPVTAICSF----NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV----- 137 (321)
T ss_dssp --------EEEEEEEEE-ESS-EEEEEEE----TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-----
T ss_pred ---cccceEEEEEEEEe-ecCcceEhhhh----CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-----
Confidence 11111245554443 46889999875 344 54444 5889999998877 444433333334555543
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
.+.+|+.|+....+.++.++.. ......+.. ......++++.|-++++.+
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~-----------------------------~~~l~~va~-d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEE-----------------------------NNKLILVAR-DYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETT-----------------------------TE-EEEEEE-ESS-BEEEEEEEE-SSSEE
T ss_pred cccEEEEEEcccCEEEEEEEcc-----------------------------CCEEEEEEe-cCCCccEEEEEEecCCcEE
Confidence 3569999999999999877610 001112211 2235568888888666799
Q ss_pred EEEeCCCcEEEEEccc
Q 003208 272 VSVSDDRSARIWEVRA 287 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~~ 287 (839)
+.+..+|.+.++....
T Consensus 188 i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTSEEEEEEE-S
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999998864
No 324
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.073 Score=57.09 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=40.2
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEee
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~ 105 (839)
.|+||+. +|+++.++.-.. .+|.++.|+ .+- .++++..+|.++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt-------~~e----~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWT-------DDE----ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEEC-------CCC----eEEEEEcCCEEEEEeCC
Confidence 5999995 688888888655 579999998 543 89999999999999985
No 325
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.60 E-value=0.021 Score=61.39 Aligned_cols=189 Identities=8% Similarity=0.080 Sum_probs=105.7
Q ss_pred ceEEEEEeeccCCCcE-EEEEeC---CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE-eecC--CeEE
Q 003208 134 WVFDVCFLKVCNGNRS-LAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY--NEII 206 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~-las~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~d--g~i~ 206 (839)
.+..-.|+| +++. ++..+. +..|.++|+.+++.......... .....+ +||+..|+. .+.+ ..|.
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~--~~~~~~---SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGM--LVVSDV---SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCc--EEeeEE---CCCCCEEEEEEccCCCcEEE
Confidence 678899999 9884 654443 35689999988766544332221 222233 688876654 4334 4566
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEE
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIW 283 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~--~i~iw 283 (839)
++++. .+. ...+..+........|+|||+.|+-.+. .+ .|.+.
T Consensus 261 ~~dl~---------------------------------~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 261 LYDTN---------------------------------TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEECC---------------------------------CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 66765 222 2233333333345579999998776664 23 57777
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---------CeEEEEcCCCceEEEeecccCCceE
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIW 352 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---------g~i~vw~~~~~~~~~~~~h~~~~i~ 352 (839)
|+.++.. .+ + ...+.. ...|+ ++.++..... ..|.+.|+.+.....+.... ...
T Consensus 307 dl~~g~~-----~r-l---t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~ 371 (419)
T PRK04043 307 KLNSGSV-----EQ-V---VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQ 371 (419)
T ss_pred ECCCCCe-----Ee-C---ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcC
Confidence 7776543 11 1 111211 13566 5655544433 36778888444444454332 233
Q ss_pred EEEEccCCCEEEEEeCC-Cc--EEEEecCC
Q 003208 353 RCLYDSLSSLLVTAGFD-SA--IKVHQFQA 379 (839)
Q Consensus 353 ~~~~~~~~~~l~t~~~d-g~--i~iw~~~~ 379 (839)
...|+|||+.|+....+ +. +.+.++++
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 57899999977665543 33 44445544
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.60 E-value=0.091 Score=58.18 Aligned_cols=97 Identities=7% Similarity=-0.003 Sum_probs=55.7
Q ss_pred EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEE------------------eCCCeEE
Q 003208 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA------------------GEDCTCR 331 (839)
Q Consensus 270 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~------------------~~dg~i~ 331 (839)
.++.++.+|.+...|..+++.. -.. ... ...++..++.++.+ ..+|.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~-----W~~---~~~-----~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLI-----SAR---PEV-----EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEEEECCCceEEEEECCCCcEe-----eEe---Eee-----ccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 5778888999999999988652 100 000 01122223333332 2357788
Q ss_pred EEcC-CCceEEEeecccC-------CceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 332 VWGS-DGKQLKMIKEHIG-------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 332 vw~~-~~~~~~~~~~h~~-------~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
-.|+ +|+.+.+...... .+...-.....+..|+.++.||.|..+|.++
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 8887 7777766543310 0111111112456788889999999999854
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.59 E-value=0.013 Score=62.78 Aligned_cols=225 Identities=13% Similarity=0.143 Sum_probs=115.9
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
.+..+.++ |+| ..+++.+++.-.|+.... ++... .+.-...+|.+ +
T Consensus 34 ~p~~ls~n-------png----r~v~V~g~geY~iyt~~~---------------~r~k~-----~G~g~~~vw~~---~ 79 (443)
T PF04053_consen 34 YPQSLSHN-------PNG----RFVLVCGDGEYEIYTALA---------------WRNKA-----FGSGLSFVWSS---R 79 (443)
T ss_dssp --SEEEE--------TTS----SEEEEEETTEEEEEETTT---------------TEEEE-----EEE-SEEEE-T---S
T ss_pred CCeeEEEC-------CCC----CEEEEEcCCEEEEEEccC---------------Ccccc-----cCceeEEEEec---C
Confidence 46677777 888 788889999999998321 11111 23345678886 5
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCc-eeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
+. +|+-...+.|.|+.--+.+....+..+.. ..++ . |.+|+..+. +.|.+||+.
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If--------~-G~LL~~~~~-~~i~~yDw~-------------- 134 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIF--------G-GNLLGVKSS-DFICFYDWE-------------- 134 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----------SSSEEEEET-TEEEEE-TT--------------
T ss_pred cc-EEEEECCCeEEEEEcCccccceEEcCCcccceEE--------c-CcEEEEECC-CCEEEEEhh--------------
Confidence 55 56666688899963323333233333321 1122 1 555655544 489999998
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC--CCCCce-eeece
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDSIE-EVGSS 302 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~-~~~~~ 302 (839)
+.+.++.+... .|..+.|++++++++..+.+ .+.+++.+..... .....+ .+ .
T Consensus 135 -------------------~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f--~ 190 (443)
T PF04053_consen 135 -------------------TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF--E 190 (443)
T ss_dssp -------------------T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE--E
T ss_pred -------------------HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce--E
Confidence 77788777633 48999999999999998876 6777776543000 000000 00 1
Q ss_pred EeeccccceEEeEECCCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 303 ~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
....-...|.+..|.++.++-.... .++.+ +.|+ ...+..-.. ++.-+.+.++.+.++....|+.+..+.+.
T Consensus 191 ~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl-~~Ge-~~~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 191 LIHEISERIKSGCWVEDCFIYTTSN-HLKYL-VNGE-TGIIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-S--SEEEEETTEEEEE-TT-EEEEE-ETTE-EEEEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEecceeEEEEEEcCEEEEEcCC-eEEEE-EcCC-cceEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 2222256788888886655555555 66652 1332 233332233 57777888877889999999999988874
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0045 Score=61.70 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=65.8
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCE
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSF 320 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~ 320 (839)
+.+....+.+|...|..++|+|..+ .+..++.+..|+|.|+++... +. ....+ ..+|+++|. .++
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----vs-----sy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----VS-----SYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----ee-----heecc-CCceeeeeccCCcce
Confidence 4445556778889999999999776 688899999999999998765 21 33344 789999998 478
Q ss_pred EEEEeCCCeEEEEcC
Q 003208 321 IITAGEDCTCRVWGS 335 (839)
Q Consensus 321 l~s~~~dg~i~vw~~ 335 (839)
++.|-.+|.|.|||+
T Consensus 251 IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDM 265 (463)
T ss_pred eEEeccCceEEEEEc
Confidence 999999999999999
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.012 Score=63.19 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=90.9
Q ss_pred eEEeEECCCEEEEEeCCCeEEEEcCCCceEEEeec--ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCC
Q 003208 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESH 388 (839)
Q Consensus 311 v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~--h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 388 (839)
.+|+.-.+.+++.|+.-|.+++|+..+.....++. ..+ .+..+.++++..++|.|+..|.|.++.++......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~---- 112 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD---- 112 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCCCc----
Confidence 45666668999999999999999985544444443 333 35556778888899999999999999885422111
Q ss_pred CcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC-eEEEEeccceEEEEEecCCCCceeEEEeeecCCCce
Q 003208 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (839)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v 467 (839)
.++... .-..|...|++++|++++ +++++...|.+....+............-...+.+|
T Consensus 113 ----------~~~~t~---------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 113 ----------LDYVTP---------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred ----------ceeecc---------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 111110 001244679999999998 788888899998776655211111111112346778
Q ss_pred EEeeecCC
Q 003208 468 ICMDLLSN 475 (839)
Q Consensus 468 ~~~~~~~~ 475 (839)
.-+|...+
T Consensus 174 VQlD~~q~ 181 (726)
T KOG3621|consen 174 VQLDYLQS 181 (726)
T ss_pred EEeecccc
Confidence 88877654
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0053 Score=66.88 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=75.6
Q ss_pred EEEEcCCCCEEEEEe----CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEc
Q 003208 261 RIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWG 334 (839)
Q Consensus 261 ~l~~~~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~ 334 (839)
-.+|+|...+++.++ ..|+|.||--. +++. .-...+-.+++++|++ -.++.|-+-|.+.+|.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadt-GEPq-----------r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADT-GEPQ-----------RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecC-CCCC-----------cccccceehhhhccChHHHHHhhccccceeEEEe
Confidence 356888888887765 35778887433 2220 1111122356789995 4677888899999999
Q ss_pred CCCceE-EEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 335 SDGKQL-KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 335 ~~~~~~-~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
...+.. .....|.. +|..+.|+++|..++|+..-|.|.+|...
T Consensus 88 ~~~~e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 944444 44455666 79999999999999999999999999885
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.55 E-value=0.03 Score=61.02 Aligned_cols=272 Identities=9% Similarity=-0.038 Sum_probs=138.4
Q ss_pred cceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecc--c----------ccccCCCccceeeEEEEEc--CcE
Q 003208 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF--I----------NCTEGSVSTRVTFEVALFG--EKR 98 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~----------~~~~~~~~~~~~~~l~~~~--~~~ 98 (839)
|+||..-. .+.|-..+++..+.-..++......+|++.+-. . ..+..|||+ .+-... .+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk----~l~~~~ey~~~ 216 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK----DLDDPKKYRSL 216 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC----EeecccceeEE
Confidence 78888876 567777777665544444444444577776641 1 122234542 221111 355
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCc
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~ 178 (839)
+.+.|.++ .+....+.- .+.-..++++| ++.++++.+. |.+.+..+..+.....
T Consensus 217 vSvID~et---------------meV~~qV~V-dgnpd~v~~sp---dGk~afvTsy-------NsE~G~tl~em~a~e~ 270 (635)
T PRK02888 217 FTAVDAET---------------MEVAWQVMV-DGNLDNVDTDY---DGKYAFSTCY-------NSEEGVTLAEMMAAER 270 (635)
T ss_pred EEEEECcc---------------ceEEEEEEe-CCCcccceECC---CCCEEEEecc-------CcccCcceeeeccccC
Confidence 66666553 222222221 11234567777 8888877653 2223333333322222
Q ss_pred eeEEEEee---ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 179 CLLYSMKL---WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 179 ~~~~s~~~---~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
..+..+.+ ....+++.+...+ ++.|.+.|....... ....+..+. -
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~----------------------------~~~v~~yIP-V 319 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANA----------------------------GSALTRYVP-V 319 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccC----------------------------CcceEEEEE-C
Confidence 21111111 0112455555442 577888887710000 022233232 3
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeec-eEeeccccceEEeEEC--CCEEEEEeCCCeEE
Q 003208 256 EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 331 (839)
.....++.++|||+++++++ .+.+|.+.|+.+.+......+++... .....-.......+|. ++...|-..|..|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeE
Confidence 45678999999999887665 48899999998754310000110000 0000112233456777 46777888999999
Q ss_pred EEcCCC-----------ceEEEeecccCCceEEE-----EEccCCCEEEEEeC
Q 003208 332 VWGSDG-----------KQLKMIKEHIGRGIWRC-----LYDSLSSLLVTAGF 368 (839)
Q Consensus 332 vw~~~~-----------~~~~~~~~h~~~~i~~~-----~~~~~~~~l~t~~~ 368 (839)
.|++.. ..+.++.-|.. +.... .-.|+|++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~-pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQ-PGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCc-cceeeecCCCcCCCCCCEEEEccc
Confidence 999832 34455555543 11111 12577888877553
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0098 Score=65.34 Aligned_cols=157 Identities=10% Similarity=0.017 Sum_probs=99.5
Q ss_pred CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCC-eEEEEEcCCC
Q 003208 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS-IFRIEWSSCG 268 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~ 268 (839)
++.+..++.|+.+|.|.+.+-. .+.++.++++... |..+....+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------------~~~~~~fqa~~~siv~~L~~~~~~ 77 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------------FQLIRGFQAYEQSIVQFLYILNKQ 77 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------------ceeeehheecchhhhhHhhcccCc
Confidence 4678899999999999888754 4555677777777 5555444455
Q ss_pred CEEEEEeCCCc-----EEEEEcccCccCC-CCCceeeeceE--eeccccceEEeEEC--CCEEEEEeCCCeEEEEcC---
Q 003208 269 SKLVSVSDDRS-----ARIWEVRAEYWKD-SDSIEEVGSSV--LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--- 335 (839)
Q Consensus 269 ~~l~s~s~d~~-----i~iwd~~~~~~~~-~~~~~~~~~~~--~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--- 335 (839)
.+|++.+.|.. +++|+++...... +.+......+. ....+.++.+++.+ -..+|.|-.+|.|..+.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 78888887764 8999998754321 11221111111 11134567777777 478999999999998853
Q ss_pred CCceEEEeecc-cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc
Q 003208 336 DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 336 ~~~~~~~~~~h-~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~ 380 (839)
..+-.+....| ...+|+.+++..+++.++-+..-..|.+|.++++
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 11111221222 2248999999888876333333457899998653
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.38 E-value=0.0063 Score=64.37 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=79.4
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEE----eCCCc----EEEEecCCCce--EEEEecCCceeEEEEeeccCCcc
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG----CSDNS----IRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~----~~d~~----i~vwd~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
+.+...+.-.+ ..++.|+- .+...+.|- +.+|. -++|+....+. +....-+..+.+.+++. +++
T Consensus 197 EvL~yirTE~d-Pl~~~Fs~--~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~---sp~ 270 (545)
T PF11768_consen 197 EVLSYIRTEND-PLDVEFSL--NQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCAR---SPS 270 (545)
T ss_pred EEEEEEEecCC-cEEEEccC--CCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEec---Ccc
Confidence 33444333333 35667765 133334332 33443 35666654332 22223333334445444 789
Q ss_pred ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEE
Q 003208 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 272 (839)
...++.|+.||.|++||.. .+ +..+..+.-.++.++|+|+|..++
T Consensus 271 E~kLvlGC~DgSiiLyD~~---------------------------------~~--~t~~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 271 EDKLVLGCEDGSIILYDTT---------------------------------RG--VTLLAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred cceEEEEecCCeEEEEEcC---------------------------------CC--eeeeeeecccceEEEEcCCCcEEE
Confidence 9999999999999999976 22 222223445678899999999999
Q ss_pred EEeCCCcEEEEEcccCcc
Q 003208 273 SVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 273 s~s~d~~i~iwd~~~~~~ 290 (839)
+|+..|.+.+||+.-...
T Consensus 316 V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSPI 333 (545)
T ss_pred EEcCCceEEEEEeecCcc
Confidence 999999999999876543
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.34 E-value=0.051 Score=62.47 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=118.3
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
+.|.++.|. .+ ...++++..+|.|.+-|.++.... +-+.-.+.|.+++|+ ||.+ .+..+.+.+
T Consensus 69 ~~i~s~~fl--~d---~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS-------~Dee---~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFL--AD---TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWS-------PDEE---LLALITGRQ 131 (1265)
T ss_pred cceEEEEEe--cc---cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeec-------CCCc---EEEEEeCCc
Confidence 568999998 65 335555556788888888765432 222333469999999 8873 455556667
Q ss_pred EEEEEEeeccC----CC------CCCCC-C-----ccccce--------eeeEecc--C---CCcceEEEEEeeccCCCc
Q 003208 98 RVKLFELNFEL----SP------NSQYQ-P-----ETCVNL--------SLVQSLP--R---LSHWVFDVCFLKVCNGNR 148 (839)
Q Consensus 98 ~i~iw~~~~~~----~~------~~~~~-~-----~~~~~~--------~~~~~~~--~---h~~~I~~~~~~~~~~~~~ 148 (839)
++.+-+-.-.. .. ..++. . +..+++ +.+...+ + -.+.=+.+.|-- +|+
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg---Dg~ 208 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG---DGE 208 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc---CCc
Confidence 76665432100 00 00000 0 000000 0000000 0 111224578877 999
Q ss_pred EEEEEe----CC-CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEe---ecCCeEEEEEeeccccccCCC
Q 003208 149 SLAIGC----SD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 149 ~las~~----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg---~~dg~i~vw~~~~~~~~~~~~ 220 (839)
++|+.. .+ ..|+|||.+ +.. .....+....-.++.+ -|.|.++++- +.|+.|.++....-+
T Consensus 209 ~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~IvffErNGL~------ 277 (1265)
T KOG1920|consen 209 YFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIVFFERNGLR------ 277 (1265)
T ss_pred EEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceee---cCCCCeEeeeeecCCCCcEEEEecCCcc------
Confidence 988732 23 789999987 322 2222222222222333 3678888873 345678888755110
Q ss_pred CCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEE---EeCCCcEEEEEcccCc
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS---VSDDRSARIWEVRAEY 289 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s---~s~d~~i~iwd~~~~~ 289 (839)
.+.....+..-...|..++|+.++..|+. +.....|++|...+..
T Consensus 278 ------------------------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 ------------------------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ------------------------ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11111112223344899999999998887 5555569999988754
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0064 Score=60.67 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=67.1
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
++....+.+|...|.+++|+| ..+ ++..++.++.|+|.|+++...+.....+ ..+|+++|- -.+..+|.+|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wD--lde~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWD--LDERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc--CCceeeeec--cCCcceeEEec
Confidence 445567788999999999999 555 7888999999999999998887766555 346777662 23477899999
Q ss_pred cCCeEEEEEee
Q 003208 201 IYNEIIVWKVD 211 (839)
Q Consensus 201 ~dg~i~vw~~~ 211 (839)
..|.|.+||++
T Consensus 256 ~nG~VlvyD~R 266 (463)
T KOG1645|consen 256 QNGMVLVYDMR 266 (463)
T ss_pred cCceEEEEEcc
Confidence 99999999998
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.33 E-value=0.033 Score=63.15 Aligned_cols=126 Identities=13% Similarity=0.035 Sum_probs=83.5
Q ss_pred cceeeEEEecCCCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-
Q 003208 245 TAVNLFRLVGHEGS-IFRIEWSS-----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (839)
Q Consensus 245 ~~~~~~~~~~h~~~-V~~l~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 317 (839)
.++.+.....|... |..++=.. .....+.|-.+..+..||.+-.... +.... ...+.......|++-+
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k----~v~~~-~k~Y~~~~~Fs~~aTt~ 587 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK----LVDSQ-SKQYSSKNNFSCFATTE 587 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc----eeecc-ccccccCCCceEEEecC
Confidence 67777777766644 55543221 1345677778889999999864320 10000 1222334456777777
Q ss_pred CCEEEEEeCCCeEEEEcCCCceEEE-eecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 318 DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~~~~~~~~-~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
..+||.|+.+|.||+||..|+..++ +.+-. .||..|+.+.||++|++.+. ..+.+++.
T Consensus 588 ~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CceEEEEeCCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 6899999999999999985544333 33434 48999999999999887664 46777776
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.29 E-value=0.16 Score=58.59 Aligned_cols=242 Identities=10% Similarity=-0.025 Sum_probs=122.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEec
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 429 (839)
.|.++.|..+.+.++.+..+|.|.+-|.....+.. ...-...|.+++|+|
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei------------------------------vg~vd~GI~aaswS~ 119 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEI------------------------------VGNVDNGISAASWSP 119 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceee------------------------------eeeccCceEEEeecC
Confidence 58899999998889999999999998774422110 111124699999999
Q ss_pred CCeEEE-EeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC
Q 003208 430 EDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (839)
Q Consensus 430 ~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~ 508 (839)
|+.+++ .+..+.++... ..|.++...+ + -.+... . .-.+.++-..+=.-+.-+.++..+
T Consensus 120 Dee~l~liT~~~tll~mT------~~f~~i~E~~----L-~~d~~~--------~-sk~v~VGwGrkeTqfrgs~gr~~~ 179 (1265)
T KOG1920|consen 120 DEELLALITGRQTLLFMT------KDFEPIAEKP----L-DADDER--------K-SKFVNVGWGRKETQFRGSEGRQAA 179 (1265)
T ss_pred CCcEEEEEeCCcEEEEEe------ccccchhccc----c-cccccc--------c-cccceecccccceeeecchhhhcc
Confidence 986554 45556665432 1122222111 0 000000 1 112222222211222222221111
Q ss_pred cce-eeeEeeccceeEEeeEEEeecCCCeEEEE-----eCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCce
Q 003208 509 QLS-FTFTWSAGIERQLLGTYWCKSLGHRFIFT-----ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGAR 582 (839)
Q Consensus 509 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 582 (839)
... ...+...........+..++.-||+++++ ......|++||.+....... -+.. .-
T Consensus 180 ~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~s----------e~~~------~l 243 (1265)
T KOG1920|consen 180 RQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTS----------EPVE------GL 243 (1265)
T ss_pred cccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhccc----------Cccc------cc
Confidence 100 00000000000011122567788988886 33336899999883221111 1111 11
Q ss_pred EEEEeeecCCCEEEEec---CCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEe--
Q 003208 583 IMCLDASFEDEVLFCGD---LRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRS-- 657 (839)
Q Consensus 583 I~~l~~s~~~~~la~gs---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s-- 657 (839)
=.+++|-|.|.++|+-- .|+.|.+|.-+... ......-.|. .. ..|..|+|. .++..|+.
T Consensus 244 ~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-----hg~f~l~~p~------de-~~ve~L~Wn---s~sdiLAv~~ 308 (1265)
T KOG1920|consen 244 QHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-----HGEFVLPFPL------DE-KEVEELAWN---SNSDILAVVT 308 (1265)
T ss_pred ccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-----ccccccCCcc------cc-cchheeeec---CCCCceeeee
Confidence 24789999999998753 44578888765310 1111111111 11 238999999 66666666
Q ss_pred -ecCcCcEEEEEEecC
Q 003208 658 -TGGDGCICYLEYDKD 672 (839)
Q Consensus 658 -~~~Dg~i~iw~~~~~ 672 (839)
......|++|-+.+-
T Consensus 309 ~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccceEEEEEecCe
Confidence 444445999987763
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.13 E-value=0.22 Score=55.15 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=27.2
Q ss_pred eEECCCEEEEEeCCCeEEEEcC-CCceEEEeecc
Q 003208 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (839)
Q Consensus 314 ~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h 346 (839)
+...++.++.++.||.++.+|. +|+.+.+.+..
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 3445788999999999999999 89988887653
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.00057 Score=74.41 Aligned_cols=197 Identities=10% Similarity=0.116 Sum_probs=123.1
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
++....++.|....+|++|+. +.+.|+.|+..|.|+++++.+|.......+|...+ .....+.+|..+++.+.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav----T~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV----TLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred cccchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCcccccccccccccc----ccccccCCcceeeeecc
Confidence 566778888999999999998 88999999999999999999998887777665432 22234566666665443
Q ss_pred CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003208 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (839)
Q Consensus 202 dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~ 279 (839)
.. ...+|+.. ....+.+.+. .-.++.|+.....-+.|..-..
T Consensus 1164 ~S~PlsaLW~~~--------------------------------s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1164 SSSPLSALWDAS--------------------------------STGGPRHSFD----EDKAVKFSNSLQFRALGTEADD 1207 (1516)
T ss_pred ccCchHHHhccc--------------------------------cccCcccccc----ccceeehhhhHHHHHhcccccc
Confidence 32 35567765 2445555554 3357888775444444444456
Q ss_pred EEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEE
Q 003208 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~ 356 (839)
..+||+.+.... ...+. ...+....-.+..|+| .+++ .|| .+||. ..+.++++..... --.-.|
T Consensus 1208 a~~YDvqT~~~l----~tylt--~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~--~~~G~F 1274 (1516)
T KOG1832|consen 1208 ALLYDVQTCSPL----QTYLT--DTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD--YGGGGF 1274 (1516)
T ss_pred eEEEecccCcHH----HHhcC--cchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee--cccccc
Confidence 889999987652 11111 0111111224566663 3333 233 36888 4455555544332 113368
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC
Q 003208 357 DSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 357 ~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|.|..++.-+ .|||+++
T Consensus 1275 HP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1275 HPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred cCCCceEEeec-----hhhhhHH
Confidence 99998777755 4899865
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.07 E-value=0.0017 Score=42.30 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=33.6
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd 284 (839)
++...+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556678999999999999999999999999999996
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.05 E-value=0.093 Score=59.65 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=96.7
Q ss_pred cceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCC
Q 003208 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~ 112 (839)
..+|+... ...|+-.|++.|+.+.+...+...+|..++.....-.-.+. ..+++-+++.+..||.......
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-----~tflGls~n~lfriDpR~~~~k-- 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-----QTFLGLSDNSLFRIDPRLSGNK-- 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-----ceEEEECCCceEEeccCCCCCc--
Confidence 45666644 47899999999999999998877667776654211001122 6677888899999998753300
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
+.....+.+ .......|++-.. ..+||+|+.+|.||+||- .+....+.-...+..+..+.. +.|
T Consensus 566 -------~v~~~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv---t~D 629 (794)
T PF08553_consen 566 -------LVDSQSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV---TAD 629 (794)
T ss_pred -------eeecccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe---cCC
Confidence 000111122 2334567777654 447899999999999995 333334433333445556665 678
Q ss_pred ceEEEEeecCCeEEEEEee
Q 003208 193 ALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~ 211 (839)
|.+|++.+ +..|.+++..
T Consensus 630 GkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 630 GKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CcEEEEee-cceEEEEEEe
Confidence 88877654 4667777764
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.05 E-value=0.89 Score=51.67 Aligned_cols=138 Identities=13% Similarity=0.204 Sum_probs=82.8
Q ss_pred CccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEee-cCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeee
Q 003208 493 KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCK-SLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (839)
Q Consensus 493 dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 571 (839)
.|.|.+|.+...+ +.+. -++..+.++..+. -.+|++||.- ...|++|+....+. +
T Consensus 806 ~GRIivfe~~e~~---~L~~------v~e~~v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~e-------------L 861 (1096)
T KOG1897|consen 806 NGRIIVFEFEELN---SLEL------VAETVVKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERE-------------L 861 (1096)
T ss_pred cceEEEEEEecCC---ceee------eeeeeeccceeehhhhCCeEEEec--CcEEEEEEccccce-------------e
Confidence 4778888776521 1111 1222233322222 3478888754 45799999887632 0
Q ss_pred eeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCC
Q 003208 572 VAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSN 651 (839)
Q Consensus 572 ~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~ 651 (839)
.....|..++.++...-.|..+++|+--++|.+-.....+.. ....-+..++ .-++++.+. .+
T Consensus 862 --r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~-----------f~evArD~~p-~Wmtaveil---~~ 924 (1096)
T KOG1897|consen 862 --RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGN-----------FEEVARDYNP-NWMTAVEIL---DD 924 (1096)
T ss_pred --hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCc-----------eEEeehhhCc-cceeeEEEe---cC
Confidence 112256778899999999999999999999887666543110 0001111333 457888888 44
Q ss_pred ceEEEeecCcCcEEEEEEecC
Q 003208 652 QTEIRSTGGDGCICYLEYDKD 672 (839)
Q Consensus 652 ~~~l~s~~~Dg~i~iw~~~~~ 672 (839)
..++-+-.+|++.+-..+..
T Consensus 925 -d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 925 -DTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred -ceEEeecccccEEEEEecCC
Confidence 44555667888888776654
No 343
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.99 E-value=0.35 Score=47.12 Aligned_cols=148 Identities=13% Similarity=0.130 Sum_probs=85.8
Q ss_pred eEEEEecCCCCCCCcceEEE-ee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 21 SALCFVHLPSHLSSLPFLLA-GS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~-g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
-.+.|. .+ +.++-+ |. ...|+.+|+.+|+.+.........-=-+|+.. .|. .+..+|.++
T Consensus 48 QGL~~~--~~----g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-------~d~----l~qLTWk~~ 110 (264)
T PF05096_consen 48 QGLEFL--DD----GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-------GDK----LYQLTWKEG 110 (264)
T ss_dssp EEEEEE--ET----TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-------TTE----EEEEESSSS
T ss_pred ccEEec--CC----CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-------CCE----EEEEEecCC
Confidence 366774 33 444444 33 25899999999998888776554434567776 553 788899999
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEeccC-CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
...+||..+ ++.+.++.- ..+ +.++ . +++.|+.......+.++|..+.+...++...
T Consensus 111 ~~f~yd~~t---------------l~~~~~~~y~~EG--WGLt--~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 111 TGFVYDPNT---------------LKKIGTFPYPGEG--WGLT--S---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEETTT---------------TEEEEEEE-SSS----EEE--E---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred eEEEEcccc---------------ceEEEEEecCCcc--eEEE--c---CCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 999999975 444444422 133 4454 3 6666766666778999999988877766532
Q ss_pred C----ceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 177 E----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 177 ~----~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
. -..+..+.+ .+|.+.|--=....|..-|+.
T Consensus 169 ~~g~pv~~LNELE~----i~G~IyANVW~td~I~~Idp~ 203 (264)
T PF05096_consen 169 DNGRPVSNLNELEY----INGKIYANVWQTDRIVRIDPE 203 (264)
T ss_dssp ETTEE---EEEEEE----ETTEEEEEETTSSEEEEEETT
T ss_pred ECCEECCCcEeEEE----EcCEEEEEeCCCCeEEEEeCC
Confidence 1 112333433 234444433334455555555
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.95 E-value=0.076 Score=43.70 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=48.8
Q ss_pred eEEEEEeeccCCC-cEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 135 VFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 135 I~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
|++|++...+.++ +.|++|+.|..||+|+-. +.+..+........+. . .....++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~--~----~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLC--S----LGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEE--E----cCCCEEEEEecCCEEEEEeCc
Confidence 6788887765443 578899999999999754 5566665444433222 2 234679999999999999854
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.94 E-value=0.9 Score=50.00 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=67.6
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEE-EEEeCCCeEEEEcC-CCc--
Q 003208 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGK-- 338 (839)
Q Consensus 265 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~-~~~-- 338 (839)
.++|++... .++.|.+.|..+..... .+. .....-....+.+.++ ++++ +++..+.++.|.|+ ..+
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~---~~v---~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAG---SAL---TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCC---cce---EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 457776665 36789999988710000 000 1223345567788888 4555 45566899999998 322
Q ss_pred ----------eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 339 ----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 339 ----------~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+.+...-. +-...+|+++|....|--.|..|..|++..
T Consensus 357 ~~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 233333322 345678999999888888999999999854
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.92 E-value=0.47 Score=46.47 Aligned_cols=212 Identities=8% Similarity=0.036 Sum_probs=111.4
Q ss_pred EeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCe
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
..+.+-.+.+.+++|+| +.+ ++|+....+.|...+. +++.++++.-....-.=.+.+ ..++.++++.-.++.
T Consensus 15 ~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y---~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY---LGNGRYVLSEERDQR 87 (248)
T ss_dssp EE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE----STTEEEEEETTTTE
T ss_pred eECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE---ECCCEEEEEEcCCCc
Confidence 45566667799999999 655 5566666778877886 578888775332111112222 255667776667899
Q ss_pred EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003208 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (839)
Q Consensus 205 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~s~s~d~~ 279 (839)
+.++++......- .......+ ..++..+-+|+|+|.++.|+.+-+..-
T Consensus 88 L~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 88 LYIFTIDDDTTSL---------------------------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp EEEEEE----TT-----------------------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS
T ss_pred EEEEEEecccccc---------------------------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence 9999985111000 01111111 135567899999999888888877777
Q ss_pred EEEEEcccCccCCCCCceeeec---eEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcCCCceEEEeecccC-----
Q 003208 280 ARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~----- 348 (839)
.+++.+..... ......... .........+.+++++ +.+++-..++..+.++|.+|+.+..+.-..+
T Consensus 141 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 141 KRLYEVNGFPG--GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLS 218 (248)
T ss_dssp EEEEEEESTT---SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-S
T ss_pred hhhEEEccccC--ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcc
Confidence 77887765110 000111100 0011223346778887 4678888889999999998887766543321
Q ss_pred ---CceEEEEEccCCCEEEEEeCCCcEEE
Q 003208 349 ---RGIWRCLYDSLSSLLVTAGFDSAIKV 374 (839)
Q Consensus 349 ---~~i~~~~~~~~~~~l~t~~~dg~i~i 374 (839)
...-.|+++++|++.++ +.-+....
T Consensus 219 ~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp S---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred cccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 23568999999865544 44444443
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.84 E-value=0.66 Score=46.92 Aligned_cols=271 Identities=11% Similarity=0.126 Sum_probs=129.3
Q ss_pred CccccccCCCceeeeee-----EEEEecCCCCCCCcceEEEee-----------CCeeEEEECCCCeeeeEEeeecCceE
Q 003208 5 DLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHGIRL 68 (839)
Q Consensus 5 ~i~~w~~~~~~~~~~Vt-----~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~~~~~~~~~~~~~~~~v 68 (839)
.+.+.|..+++.+|-|. -+..+ || ++.+++.+ ...|.+||.++-.....+......+.
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~s--pd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALS--PD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE---TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred eEEEEECCCCcEEEEeecccCCceeEC--CC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 56777878887666654 46678 88 66666522 14699999999988887776532111
Q ss_pred E------eEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEE
Q 003208 69 H------GISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (839)
Q Consensus 69 ~------~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (839)
. -++++ .|| .++.+.. ..+|.|.|++.. +.+..+.. .+ |.-
T Consensus 92 ~~~~~~~~~~ls-------~dg----k~~~V~N~TPa~SVtVVDl~~~---------------kvv~ei~~-PG---C~~ 141 (342)
T PF06433_consen 92 QVVPYKNMFALS-------ADG----KFLYVQNFTPATSVTVVDLAAK---------------KVVGEIDT-PG---CWL 141 (342)
T ss_dssp -BS--GGGEEE--------TTS----SEEEEEEESSSEEEEEEETTTT---------------EEEEEEEG-TS---EEE
T ss_pred eecccccceEEc-------cCC----cEEEEEccCCCCeEEEEECCCC---------------ceeeeecC-CC---EEE
Confidence 1 12333 454 3333332 355666665532 22222221 11 222
Q ss_pred EeeccCCCcEEEEEeCCCcEEEEecC-CCceEEEEe---cCCceeEEEE-eeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 140 FLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIILEVH---SPERCLLYSM-KLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 140 ~~~~~~~~~~las~~~d~~i~vwd~~-~~~~~~~~~---~~~~~~~~s~-~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
.-|.. + .-+.+-+.||.+.-..+. .|+...+.. ......++.- .+ ...+..++--+..|.|+--|+....
T Consensus 142 iyP~~-~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~---~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 142 IYPSG-N-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY---SRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEE-T-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE---ETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EEecC-C-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce---ECCCCeEEEEecCCEEEEEeccCCc
Confidence 23421 2 346666779999888886 455543221 1112112211 11 1223334445677888888776211
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe--------CCC--cEEEEE
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--------DDR--SARIWE 284 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--------~d~--~i~iwd 284 (839)
.. ...-|+.......-... -.+.-.-+++++..++|+..- .|. .|.++|
T Consensus 217 ~~-------------------~~~~~~~~t~~e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 217 AK-------------------FGKPWSLLTDAEKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp EE-------------------EEEEEESS-HHHHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred cc-------------------ccCcccccCccccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 10 00111110000000000 001122356666555544421 122 366777
Q ss_pred cccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEE-eCCCeEEEEcC-CCceEEEeecccC
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~-~~dg~i~vw~~-~~~~~~~~~~h~~ 348 (839)
+.+.+. +. .+ .-..++.+++.+ ..+|++. ..++.+.+||. +|+.+.++..-..
T Consensus 276 ~~t~kr-----v~-----Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 276 LKTHKR-----VA-----RI-PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp TTTTEE-----EE-----EE-EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred CCCCeE-----EE-----EE-eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 777654 22 11 112356678777 2456554 56899999999 8998888875443
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.83 E-value=0.34 Score=52.15 Aligned_cols=223 Identities=14% Similarity=0.102 Sum_probs=108.7
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i 99 (839)
...|.++ |+ +++++.+.+|.-.||.....+.... + .-...+|. +.+ .+.+.-..++|
T Consensus 35 p~~ls~n--pn----gr~v~V~g~geY~iyt~~~~r~k~~--G----~g~~~vw~-------~~n----~yAv~~~~~~I 91 (443)
T PF04053_consen 35 PQSLSHN--PN----GRFVLVCGDGEYEIYTALAWRNKAF--G----SGLSFVWS-------SRN----RYAVLESSSTI 91 (443)
T ss_dssp -SEEEE---TT----SSEEEEEETTEEEEEETTTTEEEEE--E----E-SEEEE--------TSS----EEEEE-TTS-E
T ss_pred CeeEEEC--CC----CCEEEEEcCCEEEEEEccCCccccc--C----ceeEEEEe-------cCc----cEEEEECCCeE
Confidence 5789999 98 8999998899989998544333221 1 23456777 544 44444557889
Q ss_pred EEEE-eeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC-
Q 003208 100 KLFE-LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE- 177 (839)
Q Consensus 100 ~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~- 177 (839)
.|+. ++.. ....++.. ..+..+- .|.+|+..+. +.|.+||+++++.++++..+.
T Consensus 92 ~I~kn~~~~----------------~~k~i~~~-~~~~~If------~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~v 147 (443)
T PF04053_consen 92 KIYKNFKNE----------------VVKSIKLP-FSVEKIF------GGNLLGVKSS-DFICFYDWETGKLIRRIDVSAV 147 (443)
T ss_dssp EEEETTEE-----------------TT-----S-S-EEEEE-------SSSEEEEET-TEEEEE-TTT--EEEEESS-E-
T ss_pred EEEEcCccc----------------cceEEcCC-cccceEE------cCcEEEEECC-CCEEEEEhhHcceeeEEecCCC
Confidence 9973 3221 11111111 1122221 2666766654 489999999999999998664
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
+.+.|+ +++.+++-.+. ..+.+++.......... + ..-...+..+..-..
T Consensus 148 k~V~Ws-------~~g~~val~t~-~~i~il~~~~~~~~~~~---------~-------------~g~e~~f~~~~E~~~ 197 (443)
T PF04053_consen 148 KYVIWS-------DDGELVALVTK-DSIYILKYNLEAVAAIP---------E-------------EGVEDAFELIHEISE 197 (443)
T ss_dssp EEEEE--------TTSSEEEEE-S--SEEEEEE-HHHHHHBT---------T-------------TB-GGGEEEEEEE-S
T ss_pred cEEEEE-------CCCCEEEEEeC-CeEEEEEecchhccccc---------c-------------cCchhceEEEEEecc
Confidence 555554 77888888764 57788776521000000 0 000112333333357
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--CEEEEEeCCCeEEEEcC
Q 003208 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vw~~ 335 (839)
.|.+..|..+ -++.+... +++. +-.+.. ..+..-..++.-+.+.+ +.++....|+.+..+.+
T Consensus 198 ~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~-----------~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 198 RIKSGCWVED-CFIYTTSN--HLKY--LVNGET-----------GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp --SEEEEETT-EEEEE-TT--EEEE--EETTEE-----------EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eeEEEEEEcC-EEEEEcCC--eEEE--EEcCCc-----------ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 7888888765 33333332 6666 333322 12222234455555554 67777777777766655
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.82 E-value=0.0025 Score=41.39 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=33.3
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEe
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd 163 (839)
++...+..|...|.++.|++ .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 45566678999999999999 889999999999999996
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.77 E-value=0.086 Score=43.40 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=66.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEE
Q 003208 259 IFRIEWSS---CG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (839)
Q Consensus 259 V~~l~~~~---~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw 333 (839)
|.+|++.. +| +.|+.||.|..||+|+-..-. ....-...|.++.-. +..++.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~-------------~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV-------------AEITETDKVTSLCSLGGGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE-------------EEEecccceEEEEEcCCCEEEEEecCCEEEEE
Confidence 55666543 33 579999999999999865421 222334567777665 7899999999999999
Q ss_pred cCCCceEEEeecccCCceEEEEE-ccC--C-CEEEEEeCCCcEE
Q 003208 334 GSDGKQLKMIKEHIGRGIWRCLY-DSL--S-SLLVTAGFDSAIK 373 (839)
Q Consensus 334 ~~~~~~~~~~~~h~~~~i~~~~~-~~~--~-~~l~t~~~dg~i~ 373 (839)
+-. ..+.+.+..+. +.++++ ..+ | .-|++|-.+|.|-
T Consensus 69 ~~~-~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DRS-QRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eCc-ceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 863 33444444333 566654 333 3 3688888888874
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.71 E-value=0.83 Score=46.23 Aligned_cols=262 Identities=13% Similarity=0.073 Sum_probs=143.1
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE--------c--CcEEEEEEeeccCCCCCC
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--------G--EKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~--------~--~~~i~iw~~~~~~~~~~~ 113 (839)
+.+.|+|.++++.+..+...-. ..+..+ ||++ .+.++. | .-.|.+||.++-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~s-------pdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~----- 78 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALS-------PDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLS----- 78 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE--------TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTE-----
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeEC-------CCCC---EEEEEEEEEeccccccceeEEEEEecCcCc-----
Confidence 4899999999999998886432 235667 8885 333221 1 2368999987632
Q ss_pred CCCccccceeeeE--ecc-CCCc----ceEEEEEeeccCCCcEEEEE--eCCCcEEEEecCCCceEEEEecCCceeEEEE
Q 003208 114 YQPETCVNLSLVQ--SLP-RLSH----WVFDVCFLKVCNGNRSLAIG--CSDNSIRVWDISNSSIILEVHSPERCLLYSM 184 (839)
Q Consensus 114 ~~~~~~~~~~~~~--~~~-~h~~----~I~~~~~~~~~~~~~~las~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~ 184 (839)
+.. .+. +|+. ....++++. ++++++.. +=...|.|-|+..++.+..+..+.-..+|..
T Consensus 79 ----------~~~EI~iP~k~R~~~~~~~~~~~ls~---dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~ 145 (342)
T PF06433_consen 79 ----------PTGEIEIPPKPRAQVVPYKNMFALSA---DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS 145 (342)
T ss_dssp ----------EEEEEEETTS-B--BS--GGGEEE-T---TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE
T ss_pred ----------ccceEecCCcchheecccccceEEcc---CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec
Confidence 221 111 1111 123356666 77776654 3345788999999999888887764444432
Q ss_pred eeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeE-EEE
Q 003208 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIE 263 (839)
Q Consensus 185 ~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~ 263 (839)
. +.-+.+-+.||.+.-..+...... ..+....+..-.++++ .-+
T Consensus 146 ------~-~~~F~~lC~DGsl~~v~Ld~~Gk~----------------------------~~~~t~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 146 ------G-NRGFSMLCGDGSLLTVTLDADGKE----------------------------AQKSTKVFDPDDDPLFEHPA 190 (342)
T ss_dssp ------E-TTEEEEEETTSCEEEEEETSTSSE----------------------------EEEEEEESSTTTS-B-S--E
T ss_pred ------C-CCceEEEecCCceEEEEECCCCCE----------------------------eEeeccccCCCCcccccccc
Confidence 2 234777888999998888711000 0000011111122222 223
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec----ccc----ceEEeEEC--CCEEEEEe---C----
Q 003208 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HNA----RVWDCCLT--DSFIITAG---E---- 326 (839)
Q Consensus 264 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~----~v~~~~~~--~~~l~s~~---~---- 326 (839)
+...+..++--+..|.|+--|+..... +...+..+.. -.. .-.-++++ .+.|+..- .
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSA------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSE------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcc------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 334444555567777777777766542 2221111110 000 11123444 23333221 1
Q ss_pred -CC--eEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEE-eCCCcEEEEecCC
Q 003208 327 -DC--TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GFDSAIKVHQFQA 379 (839)
Q Consensus 327 -dg--~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~-~~dg~i~iw~~~~ 379 (839)
|+ .|.++|+ +++.+.++.... ++.+|.++.+.+ +|++. ..++.+.+||..+
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 22 3666777 788888887543 488999998775 66554 4579999999854
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.65 E-value=0.36 Score=51.20 Aligned_cols=176 Identities=11% Similarity=0.056 Sum_probs=91.4
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeee-------cCceEEeEEecccccccCCCcccee
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-------HGIRLHGISCNFINCTEGSVSTRVT 88 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~~~~~~~ 88 (839)
.++|++++.| .- | +++.|. +|.+.|.|......+..-... ....|++|.|+--. ...|+..--
T Consensus 86 ~g~vtal~~S--~i----G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~--~~~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNS--DI----G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT--LGGDGYSSI 156 (395)
T ss_dssp S-SEEEEEE---BT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE---TTSSSEEE
T ss_pred CCcEeEEecC--CC----c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe--cCCCcccce
Confidence 5889999999 43 4 677777 899999999877777663322 23357788887321 123331111
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc-------------------CCCcE
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-------------------NGNRS 149 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-------------------~~~~~ 149 (839)
.+++....|.+.+|.+..... .....+.......+.+.|..+..-..+ .-..+
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~--------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSN--------GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GG--------G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEEEeCCCCEEEEEEecCCC--------CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 445555679999999864220 111123333334566777777643100 00124
Q ss_pred EEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccC--CccceEEEEeecCCeEEEEEee
Q 003208 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD--NLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 150 las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
+++++ +..++|+...+.+...+.... ...+..+.+... ...+..|++-..+|.|+++.+-
T Consensus 229 vVvvS-e~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 229 VVVVS-ESDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEE--SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEc-ccceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 44444 678999999887776655422 111222222110 1346678888899999999987
No 353
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.58 E-value=1.2 Score=46.45 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=91.9
Q ss_pred CcceEEEee--CCeeEEEECCC----CeeeeEEee---ecC---ceEEeEEecccccccCCCccceeeEEEEEc------
Q 003208 34 SLPFLLAGS--GSQVLLYDLEA----GTLIRPFQV---FHG---IRLHGISCNFINCTEGSVSTRVTFEVALFG------ 95 (839)
Q Consensus 34 ~~~~l~~g~--~~~v~iwd~~~----~~~~~~~~~---~~~---~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~------ 95 (839)
.+++|++.. .+.|+|+|+.+ .++.+.++. +.. ...|.+-.. |+|+ .++.+-|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-------p~G~---imIS~lGd~~G~g 155 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-------PDGR---IMISALGDADGNG 155 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--------SS-----EEEEEEEETTS-S
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-------CCcc---EEEEeccCCCCCC
Confidence 367777766 68999999874 345555542 110 122333333 6653 4454432
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccC---CCcceEEEEEeeccCCCcEEEEEe------------------
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR---LSHWVFDVCFLKVCNGNRSLAIGC------------------ 154 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~I~~~~~~~~~~~~~~las~~------------------ 154 (839)
-+-+.++|-++ ++....... ....-.++-+.| ..+.++|..
T Consensus 156 ~Ggf~llD~~t---------------f~v~g~We~~~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 156 PGGFVLLDGET---------------FEVKGRWEKDRGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp --EEEEE-TTT-----------------EEEE--SB-TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCcEEEEcCcc---------------ccccceeccCCCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhc
Confidence 13455555432 222222221 122335666777 667666643
Q ss_pred --CCCcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEe-eccccccCCCCCCCccCCCC
Q 003208 155 --SDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV-DWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 155 --~d~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~ 230 (839)
..+++.+||+.+.+.++++.-.. ..+...+.|...+....=++.+.-.++|..|-- ..++...
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a------------- 284 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA------------- 284 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE-------------
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee-------------
Confidence 24579999999999999998554 456777887655444433444444555655544 2111000
Q ss_pred CCCceeeEeecccccc----eeeEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcccCcc
Q 003208 231 SSDFKCFKLQDQQHTA----VNLFRLVGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYW 290 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~d~~i~iwd~~~~~~ 290 (839)
.+.+.+-.....+ ..+..+..-..-|+.|..|.|.++|.. +-.+|.||.||+.+...
T Consensus 285 ---~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 285 ---EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ---EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ---eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 0000000000000 000001111345789999999998855 55789999999998765
No 354
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.62 Score=45.47 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=114.1
Q ss_pred ccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEE
Q 003208 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (839)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~v 207 (839)
+.+-...|.++.|+| +.+.|.+......-.||=..+|+.++++.-..-.-.-.+.+ -.++.++++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE---ecCCEEEEEehhcceEEE
Confidence 335555699999999 88888888877888888778899998875221100111222 256777777778899999
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
+.+......- . .....-++......+...-+++|+|..+.|+.+-+-.-+.|+....
T Consensus 155 ~~vd~~t~~~--------------------~---~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 155 FTVDADTTVI--------------------S---AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEcCCccEE--------------------e---ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 8887211000 0 0000011111112255677899999999999998888888887764
Q ss_pred CccCCCCCceeeeceEeecc-------ccceEEeEEC---CCEEEEEeCCCeEEEEcCCCceEEEeeccc
Q 003208 288 EYWKDSDSIEEVGSSVLYGH-------NARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI 347 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~ 347 (839)
...... .. ....+ -..|.++.|. +.+++-+.+++.+...|..|..+..+..+.
T Consensus 212 ~~~~l~--~~-----~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~ 274 (316)
T COG3204 212 SPSSLS--VH-----ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK 274 (316)
T ss_pred CCcccc--cc-----cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc
Confidence 332100 00 11111 1235566776 578888888999988998887766655443
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.28 Score=51.42 Aligned_cols=122 Identities=9% Similarity=0.018 Sum_probs=81.8
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc----ccceEE
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGS-------KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH----NARVWD 313 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~ 313 (839)
.++.+...+-|.+ |.-+.+.|+.+ .-+.|-.|..|.-||++-... ..+ ....+| .....|
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------~kl--~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------NKL--AVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------cee--eeeeccccccccccce
Confidence 6677777776665 77777777643 234566788899999885432 011 122222 223445
Q ss_pred eEEC-CCEEEEEeCCCeEEEEcCCCceEEE-eecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 314 ~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~-~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.+-. ..+|+.|+.+|.||+||..++..++ +++... +|..+..+.+|++|++.+ +..+.+.+.
T Consensus 436 ~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 5554 6899999999999999985544443 444444 899999999999887655 457777776
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.21 E-value=2.8 Score=46.77 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCCEEEEEeCCCeEEEEcC-CCceEEEeeccc
Q 003208 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (839)
Q Consensus 317 ~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~ 347 (839)
.+.+++.+..||.++.+|. +|+.+.+++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 3567888888999999999 899998886643
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.17 E-value=1.5 Score=43.09 Aligned_cols=166 Identities=9% Similarity=0.065 Sum_probs=88.8
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~- 95 (839)
..+..|+|. |+ .+.+.++.. .+.|..++. +|+.++++......-.-+|++. .++ .++++..
T Consensus 22 ~e~SGLTy~--pd---~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-------g~~----~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYN--PD---TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-------GNG----RYVLSEER 84 (248)
T ss_dssp S-EEEEEEE--TT---TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--------STT----EEEEEETT
T ss_pred CCccccEEc--CC---CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-------CCC----EEEEEEcC
Confidence 458999999 98 344555554 588888886 5888888875433347889988 554 5555553
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeee--EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC---CceE
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLV--QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SSII 170 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~---~~~~ 170 (839)
++.+.++++......... ...+.. .....+...+-.++|.| .++.|+.+-...-..++.+.. ...+
T Consensus 85 ~~~L~~~~~~~~~~~~~~------~~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDR------ADVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp TTEEEEEEE----TT--E------EEEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred CCcEEEEEEeccccccch------hhceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEccccCccce
Confidence 789999998542210000 000111 11123556689999999 777777777666667776653 2222
Q ss_pred EEEe-------cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 171 LEVH-------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 171 ~~~~-------~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
.... .....-..++.++ +..+.+++-...+..|..+|..
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~--p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYD--PRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEE--TTTTEEEEEETTTTEEEEE-TT
T ss_pred eeccccccccccceeccccceEEc--CCCCeEEEEECCCCeEEEECCC
Confidence 1111 0011112334443 4566777778888899888854
No 358
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.12 E-value=3.6 Score=47.13 Aligned_cols=319 Identities=13% Similarity=0.088 Sum_probs=155.2
Q ss_pred CccceEEEEeecCCeEEEEEee-ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC
Q 003208 190 NLEALRIASGTIYNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 268 (839)
..++...+.|+.+|.+...-+. .++... ........-|-..-..|+..-++|
T Consensus 266 ~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s---------------------------~~~lkve~lge~siassi~~L~ng 318 (1096)
T KOG1897|consen 266 DLQGSRYLLGDEDGMLFKLLLSHTGETVS---------------------------GLDLKVEYLGETSIASSINYLDNG 318 (1096)
T ss_pred cCCccEEEEecCCCcEEEEEeeccccccc---------------------------ceEEEEEecCCcchhhhhhcccCc
Confidence 4677778888999998877665 111110 001111223444555666665554
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC------CCEEEEEe---CCCeEEEEcC--CC
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------DSFIITAG---EDCTCRVWGS--DG 337 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~l~s~~---~dg~i~vw~~--~~ 337 (839)
.+++||.-|.=.+-.+.+.... ......+ .....-++|.++... ...++|++ .||++|+... .-
T Consensus 319 -~lFvGS~~gdSqLi~L~~e~d~-gsy~~il---et~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I 393 (1096)
T KOG1897|consen 319 -VLFVGSRFGDSQLIKLNTEPDV-GSYVVIL---ETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI 393 (1096)
T ss_pred -eEEEeccCCceeeEEccccCCC-Cchhhhh---hhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc
Confidence 7889988777677766553321 0001111 112234577777654 25666664 5899999876 22
Q ss_pred ceE--EEeecccCCceEEEE--EccCC-CEEEEEeCCCcEEEEecCCcCccCcCCC-----Cccc--ccCCCcceEEee-
Q 003208 338 KQL--KMIKEHIGRGIWRCL--YDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESH-----PEAK--EFNGRTEIFSIK- 404 (839)
Q Consensus 338 ~~~--~~~~~h~~~~i~~~~--~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~- 404 (839)
..+ ..+.+- +++|.+. ++++- .+|+.+-. +.-++..+..+ ....+.+ ...+ .--....+..+.
T Consensus 394 ~e~A~i~l~Gi--kg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs 469 (1096)
T KOG1897|consen 394 DELASIDLPGI--KGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTS 469 (1096)
T ss_pred ceeeEeecCCc--cceeEeeccccccCCcEEEEEec-cceEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEec
Confidence 233 334443 3588887 43321 24444333 34455555432 1111110 0000 000011111111
Q ss_pred ----cCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCC
Q 003208 405 ----IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (839)
Q Consensus 405 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 480 (839)
.-+..+....|....+.....++.....+++++..+.++...+-... ...+.+.....++.|+|+.|-+ ..
T Consensus 470 ~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~--d~ 544 (1096)
T KOG1897|consen 470 NSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLG--DA 544 (1096)
T ss_pred ccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCC--CC
Confidence 00111122223333333333333333356666655666554444333 2234444557889999998753 01
Q ss_pred CCCCcEEEEeCCCccEEEEEEcCCCCC-CcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecC
Q 003208 481 CGIDDWVALGDGKGNMTIVRVVGDVHT-PQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (839)
Q Consensus 481 ~~~~~~l~~g~~dg~i~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~ 554 (839)
....+++++|.-+..+.+.-....... -..++. ....++.++. .++.-|..+|.++..||.+.-|.++.
T Consensus 545 ~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~---~~~iPRSIl~--~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 545 PNKSRLLAVGLWSDISMILTFLPDLILITHEQLS---GEIIPRSILL--TTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred CCcceEEEEEeecceEEEEEECCCcceeeeeccC---CCccchheee--EEeeccceEEEEEcCCceEEEEEEEc
Confidence 123358899887776665543221111 000000 0011222222 44566789999999999987776654
No 359
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.86 Score=50.25 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=42.3
Q ss_pred CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeec
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~ 106 (839)
-..|+||+. +|+++.++.-.++ ++-++.|+ .+- .++++..+|+++||++..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs-------~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHG-ELIGMGWS-------DDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCC-Ceeeeccc-------CCc----eEEEEeccceEEEeecch
Confidence 357999995 6899988887666 68899998 553 899999999999999974
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.01 E-value=0.0026 Score=67.28 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=111.7
Q ss_pred eEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe----CCCcEEEEe
Q 003208 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWD 163 (839)
Q Consensus 89 ~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~----~d~~i~vwd 163 (839)
.+++++ .+|.|-+-......... -....+|....++++|++- |.+.||.|- .|..+.|||
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs-------------~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSS-------------AEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred hhhhhccccCceEEeecCCccccc-------------ceecccccccccccccccc--cHHHHHhhhhhhcccCCcccee
Confidence 344443 47888888776433111 2234578889999999983 556777763 366799999
Q ss_pred cCCCce--EE--EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEe
Q 003208 164 ISNSSI--IL--EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (839)
Q Consensus 164 ~~~~~~--~~--~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (839)
+.++-. .. .+.........++++ ..+..++.+|.....+.++|++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cw---lrd~klvlaGm~sr~~~ifdlR---------------------------- 184 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCW---LRDTKLVLAGMTSRSVHIFDLR---------------------------- 184 (783)
T ss_pred cccccCCCccccccccccccCcccccc---ccCcchhhcccccchhhhhhhh----------------------------
Confidence 987622 11 111111111113332 2566788888888899999987
Q ss_pred ecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE-cccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 240 QDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWE-VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 240 ~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
........-.+..+.++..+| .+.++++-. |+.|.+|| ..+-+.. ++.+. .........+..++|.
T Consensus 185 ------qs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp----l~~i~-~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 185 ------QSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP----LQIIL-RNENKKPKQLFALAYC 252 (783)
T ss_pred ------hhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH----HHHHh-hCCCCcccceeeEEec
Confidence 111111122345667788888 667777766 89999999 3332211 11000 0111122357888888
Q ss_pred ---CCEEEEEeCC-CeEEEEcC
Q 003208 318 ---DSFIITAGED-CTCRVWGS 335 (839)
Q Consensus 318 ---~~~l~s~~~d-g~i~vw~~ 335 (839)
+..+++...| ++|+++++
T Consensus 253 Ptrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cCCcchhhhhccCcceEEEecc
Confidence 3566666655 78999997
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.96 E-value=0.016 Score=39.53 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=28.8
Q ss_pred CceEEEEeeecCCCEEEEecCCccEEEEecc
Q 003208 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 580 ~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~ 610 (839)
..+|++++|||...+||+|+.+|.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5569999999999999999999999999985
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.81 E-value=3.1 Score=43.91 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=114.3
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~ 175 (839)
.+.+.|+|+.++. ...+......+....|+| +++.+|-.. ++.|.+++..++...+....
T Consensus 22 ~~~y~i~d~~~~~----------------~~~l~~~~~~~~~~~~sP---~g~~~~~v~-~~nly~~~~~~~~~~~lT~d 81 (353)
T PF00930_consen 22 KGDYYIYDIETGE----------------ITPLTPPPPKLQDAKWSP---DGKYIAFVR-DNNLYLRDLATGQETQLTTD 81 (353)
T ss_dssp EEEEEEEETTTTE----------------EEESS-EETTBSEEEE-S---SSTEEEEEE-TTEEEEESSTTSEEEESES-
T ss_pred ceeEEEEecCCCc----------------eEECcCCccccccceeec---CCCeeEEEe-cCceEEEECCCCCeEEeccc
Confidence 4678888888633 122222256788899999 999998775 68899999877754433222
Q ss_pred CCceeEEEE-------------eeccCCccceEEEEeec-CCeEEEEEeeccccccCCC---CCCCccCCCCCCCceeeE
Q 003208 176 PERCLLYSM-------------KLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLN---SPEGNHAHGSSSDFKCFK 238 (839)
Q Consensus 176 ~~~~~~~s~-------------~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 238 (839)
....+...+ .....+|++.+||.... +..|..+.+......+... ........|.....-.+.
T Consensus 82 g~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~ 161 (353)
T PF00930_consen 82 GEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLF 161 (353)
T ss_dssp -TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEE
T ss_pred cceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEE
Confidence 211111100 11123688888887544 4556665554211111000 000111111222222333
Q ss_pred eecccccce-eeEEE---ecCCCCeEEEEEcCCCCEEEEE--eCCC---cEEEEEcccCccCCCCCceeeeceEeecccc
Q 003208 239 LQDQQHTAV-NLFRL---VGHEGSIFRIEWSSCGSKLVSV--SDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (839)
Q Consensus 239 ~~~~~~~~~-~~~~~---~~h~~~V~~l~~~~~~~~l~s~--s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (839)
+++...... .+... ..-...+..+.|.++++.|+.. ..+. .+.++|..++.. +.+ .......
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~------~~~---~~e~~~~ 232 (353)
T PF00930_consen 162 VVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET------RVV---LEETSDG 232 (353)
T ss_dssp EEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC------EEE---EEEESSS
T ss_pred EEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce------eEE---EEecCCc
Confidence 344331111 11111 2334568889999998844443 3332 355667665443 111 1111112
Q ss_pred ce---EEeEEC----CCEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEE-EEEccCCCEE-EEEeC
Q 003208 310 RV---WDCCLT----DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR-CLYDSLSSLL-VTAGF 368 (839)
Q Consensus 310 ~v---~~~~~~----~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~-~~~~~~~~~l-~t~~~ 368 (839)
.| ....|. ..++.....||.-+|+-+ .+.....+....- .|.. +.++++++.| +++..
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~-~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDW-EVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS--EEEEEEEECTSSEEEEEESS
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCce-eecccceEcCCCCEEEEEecC
Confidence 21 123332 345555557776665544 5655555554443 4755 5677776644 34444
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.75 E-value=0.0047 Score=65.37 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=117.8
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE-EEEecCCceeEEEEeeccCCccceEEEEee----cCCeEEE
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIV 207 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~----~dg~i~v 207 (839)
..+.|++..- +.+..+++.|..+|.|-+-..+...-- .....+....+.++++ .+.|...||+|- .|..+.|
T Consensus 57 qy~kcva~~y-~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFY-GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhc-CCchhhhhhccccCceEEeecCCcccccceeccccccccccccc--ccccHHHHHhhhhhhcccCCccc
Confidence 3466776654 113457888999999999887654332 2222222223334443 244667777763 3578999
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~ 286 (839)
||+...=-.|+ ... .+. +-.....+++|..+.+.+++|...+.+.++|++
T Consensus 134 wdi~s~ltvPk---------------------------e~~--~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 134 WDINSLLTVPK---------------------------ESP--LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred eecccccCCCc---------------------------ccc--ccccccccCccccccccCcchhhcccccchhhhhhhh
Confidence 99872211111 011 111 233445588888888899999999999999998
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeE---ECCCEEEEEeCCCeEEEEcC--C-CceEEEeeccc---CCceEEEEEc
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWGS--D-GKQLKMIKEHI---GRGIWRCLYD 357 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~l~s~~~dg~i~vw~~--~-~~~~~~~~~h~---~~~i~~~~~~ 357 (839)
..... ...-.+..+..+. |.++++++-. ||.|.+||. . ..++..+.... .+.+..++|+
T Consensus 185 qs~~~-----------~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 185 QSLDS-----------VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhh-----------hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 43220 1111112222232 4578888777 999999994 2 12222221111 1248899999
Q ss_pred cCCC-EEEEEeC-CCcEEEEecC
Q 003208 358 SLSS-LLVTAGF-DSAIKVHQFQ 378 (839)
Q Consensus 358 ~~~~-~l~t~~~-dg~i~iw~~~ 378 (839)
|... .+++... .++|+++++.
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCCcchhhhhccCcceEEEeccc
Confidence 8643 5566665 4789999984
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.71 E-value=3.8 Score=44.11 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=40.7
Q ss_pred ccceEEeEEC--CCEEEEEeCCCeEEEEcCC-CceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 308 NARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 308 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~-~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.+++..++.+ +++++.-..+|.+.+...+ .+.+..+..........|.|+-+...++.- ...+.+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP 286 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence 3568888887 5788888889999888773 334444443322245677776554333222 334555543
No 365
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.51 E-value=3 Score=47.92 Aligned_cols=121 Identities=23% Similarity=0.259 Sum_probs=75.6
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEe--e--------------------ecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQ--V--------------------FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~--~--------------------~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
+-|++..|+.+.+||-..... .++. . .....|+.|.++ |+| .+++.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n-------~~g----~~lal 101 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLN-------PTG----SLLAL 101 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEEC-------CCC----CEEEE
Confidence 566777788999999654332 1111 0 012346666666 888 89999
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccc-cceee--e---EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETC-VNLSL--V---QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
+|...|.|..+.........|..... ...+. + .....+...|..+.|+|.+.++..|+.-..|+++|+||+...
T Consensus 102 ~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 102 VGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 99999999888643221222221111 11111 1 112245578999999996656778888888999999999764
Q ss_pred c
Q 003208 168 S 168 (839)
Q Consensus 168 ~ 168 (839)
+
T Consensus 182 ~ 182 (717)
T PF10168_consen 182 Q 182 (717)
T ss_pred C
Confidence 4
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.34 E-value=0.046 Score=50.83 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=67.5
Q ss_pred CCcEEEEEeCCCcEEEEecCCC-ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCC
Q 003208 146 GNRSLAIGCSDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~ 224 (839)
-+..|+.|+.+|.|.+|+..-. ............+..-+ ....++.+.+++..+|.|+.|+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I---p~~~~~~~~c~~~~dg~ir~~n~~------------- 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI---PNGRDSSLGCVGAQDGRIRACNIK------------- 132 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceecc---ccccccceeEEeccCCceeeeccc-------------
Confidence 3456888999999999988621 11111111111111111 113456688999999999999998
Q ss_pred ccCCCCCCCceeeEeecccccceeeEEEecCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEEccc
Q 003208 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSV--SDDRSARIWEVRA 287 (839)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~--s~d~~i~iwd~~~ 287 (839)
..+.+.....|+ .++..+..+..++.+.++ |.|..++.|++..
T Consensus 133 --------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 133 --------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred --------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 555565666676 555555556666677777 7778888888765
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.12 Score=55.35 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=54.9
Q ss_pred CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeE-EEEEcCCC
Q 003208 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSSCG 268 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~ 268 (839)
+|.-.+||.++.+|.|.+..+. .+.+..+.-|...++ +++|.|||
T Consensus 29 nP~~dLiA~~t~~gelli~R~n----------------------------------~qRlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN----------------------------------WQRLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cCccchhheeccCCcEEEEEec----------------------------------cceeEeccCCCCccceeeeecCCC
Confidence 5778899999999999998876 233444444555555 99999999
Q ss_pred CEEEEEeCCCcEEEEEcccCcc
Q 003208 269 SKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
+.|+.|-.||+|++.|..++..
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCc
Confidence 9999999999999999998765
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.14 E-value=0.068 Score=36.50 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=29.7
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
...|.+++|+| ..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCcC
Confidence 35699999999 9999999999999999998 5543
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.91 E-value=5.1 Score=40.90 Aligned_cols=117 Identities=11% Similarity=-0.046 Sum_probs=69.0
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s 323 (839)
.....+..|-..-++|+||||++.|+.+.. .+.|.-|++....... .............+..-.++.. +++-++
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---GGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---CCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 344444555566688999999987776654 4778888776311100 0000001222233444445554 444444
Q ss_pred EeCCC-eEEEEcCCCceEEEeecccCCceEEEEE-ccCCCEEEEEe
Q 003208 324 AGEDC-TCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLLVTAG 367 (839)
Q Consensus 324 ~~~dg-~i~vw~~~~~~~~~~~~h~~~~i~~~~~-~~~~~~l~t~~ 367 (839)
+..+| .|.+|+.+|+.+..+..+.. .+++++| .++.+.|+..+
T Consensus 230 a~~~g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cccCCceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 44443 89999999999999888755 4888888 45555444444
No 370
>PHA02713 hypothetical protein; Provisional
Probab=94.88 E-value=1.8 Score=48.83 Aligned_cols=61 Identities=3% Similarity=0.097 Sum_probs=32.6
Q ss_pred EECCCEEEEEeCC------CeEEEEcCCC--ce--EEEeecccCCceEEEEEccCCCEEEEEeCCC--cEEEEecC
Q 003208 315 CLTDSFIITAGED------CTCRVWGSDG--KQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS--AIKVHQFQ 378 (839)
Q Consensus 315 ~~~~~~l~s~~~d------g~i~vw~~~~--~~--~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg--~i~iw~~~ 378 (839)
.+.+...+.||.+ ..+..||... +- +..+..... ..+++. -++++.++||.|+ .+..||+.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTIL-HDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEE-ECCEEEEEeeecceeehhhcCcc
Confidence 3446666666654 2466788843 22 222222221 112222 3678889999888 55666663
No 371
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.84 E-value=5.9 Score=41.29 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEE
Q 003208 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (839)
Q Consensus 533 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~ 605 (839)
..++++++.-..+.|....++...... -...+......++..+++.|||.+.++-+.+|.|+
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVT-----------EEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEE-----------EEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCcc-----------ceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 477888887777788877776432100 11122233456899999999999999988899885
No 372
>PHA02713 hypothetical protein; Provisional
Probab=94.65 E-value=2.8 Score=47.21 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=33.9
Q ss_pred CCCEEEEEeCC------CcEEEEEccc-CccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCC--eEEEEcC
Q 003208 267 CGSKLVSVSDD------RSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--TCRVWGS 335 (839)
Q Consensus 267 ~~~~l~s~s~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg--~i~vw~~ 335 (839)
+++..+.|+.+ ..+..||..+ .+. ..+. .+.........+.+.+...+.||.++ ++-.||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W------~~~~--~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW------ELIT--TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCe------eEcc--ccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 45555666643 2356788876 333 1111 22222223344455578888898888 5666666
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.62 E-value=4.2 Score=41.53 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=65.5
Q ss_pred cCccccccCCCc-----eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEe----eecCceEEeEEec
Q 003208 4 KDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ----VFHGIRLHGISCN 74 (839)
Q Consensus 4 ~~i~~w~~~~~~-----~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~----~~~~~~v~~i~~~ 74 (839)
+.+.-|+..++. +.+.++++..- .. +..|++... .+.+++.+++..+..+. .....+.+...+.
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~--d~----~g~Lv~~~~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~ 119 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALI--DA----GGRLIACEH-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD 119 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceee--cC----CCeEEEEcc-ccEEEeccCCceeEEeccccCCCCcCCCCceeEc
Confidence 455666666554 22334444443 22 334444442 35666666555532222 1122344555666
Q ss_pred ccccccCCCccceeeEEEEEc---------CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 75 FINCTEGSVSTRVTFEVALFG---------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~---------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
|+|. .++...+ ...-.||.++.. ...++.+..|-.--+.|+|+|
T Consensus 120 -------pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~--------------g~~~~l~~~~~~~~NGla~Sp--- 172 (307)
T COG3386 120 -------PDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPD--------------GGVVRLLDDDLTIPNGLAFSP--- 172 (307)
T ss_pred -------CCCC---EEEeCCCccccCccccCCcceEEEEcCC--------------CCEEEeecCcEEecCceEECC---
Confidence 7763 4444433 112245555421 233344444444457899999
Q ss_pred CCcEEEEEeC-CCcEEEEecC
Q 003208 146 GNRSLAIGCS-DNSIRVWDIS 165 (839)
Q Consensus 146 ~~~~las~~~-d~~i~vwd~~ 165 (839)
+++.|..+.. .+.|.-|++.
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecC
Confidence 9977766644 4777777765
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.58 E-value=5.9 Score=40.09 Aligned_cols=148 Identities=11% Similarity=-0.026 Sum_probs=84.5
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
..+..|+.|+.+| |++++... ........ +...|..+...|+-+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~--------------------------------~~~~~~i~--~~~~I~ql~vl~~~~~ 49 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD--------------------------------PSKPTRIL--KLSSITQLSVLPELNL 49 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC--------------------------------CccceeEe--ecceEEEEEEecccCE
Confidence 3567888898888 88888830 11222211 2233999999998877
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeec----eEeeccccceEEeE----ECCCEEEEEeCCCeEEEEcC-CC----
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS----SVLYGHNARVWDCC----LTDSFIITAGEDCTCRVWGS-DG---- 337 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~----~~~~~l~s~~~dg~i~vw~~-~~---- 337 (839)
+++-++ +.++++++..-............. .........+...+ ..+...+.......|.+|.. ..
T Consensus 50 llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f 128 (275)
T PF00780_consen 50 LLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF 128 (275)
T ss_pred EEEEcC-CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc
Confidence 777654 999999998754421000000000 00112223344444 11333444444558888877 21
Q ss_pred -ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 338 -KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 338 -~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+..+.+.... .+.+++|. ++.++.|..+ ...+.|+..
T Consensus 129 ~~~~ke~~lp~--~~~~i~~~--~~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 129 SKLLKEISLPD--PPSSIAFL--GNKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred cceeEEEEcCC--CcEEEEEe--CCEEEEEeCC-ceEEEecCC
Confidence 3555555543 48889998 4566666655 577888864
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=4.9 Score=39.14 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=66.9
Q ss_pred EEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEe-EEecccccccCCCccceeeEEEEEc----
Q 003208 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFG---- 95 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~~~~~~~~~l~~~~---- 95 (839)
.|+|+ |. ....+.++=. +....++|.++.+++.++...++---.+ =.|+ |||. .+.++-+
T Consensus 72 gi~~~--p~--~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-------~dG~---~LYATEndfd~ 137 (366)
T COG3490 72 GIAFH--PA--LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-------PDGR---LLYATENDFDP 137 (366)
T ss_pred CeecC--CC--CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-------CCCc---EEEeecCCCCC
Confidence 57777 66 2222333333 6688999999888776665433211111 2466 8884 4555533
Q ss_pred -CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe
Q 003208 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (839)
Q Consensus 96 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~ 154 (839)
-|.|-|||.... ++.+..+..|.-.-..+.+.+ ||..++.+.
T Consensus 138 ~rGViGvYd~r~~--------------fqrvgE~~t~GiGpHev~lm~---DGrtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREG--------------FQRVGEFSTHGIGPHEVTLMA---DGRTLVVAN 180 (366)
T ss_pred CCceEEEEecccc--------------cceecccccCCcCcceeEEec---CCcEEEEeC
Confidence 378999998742 567778888887778899999 999888763
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.54 E-value=3 Score=46.93 Aligned_cols=220 Identities=11% Similarity=0.037 Sum_probs=111.2
Q ss_pred cceEEEee-C------CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-C------cEEE
Q 003208 35 LPFLLAGS-G------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E------KRVK 100 (839)
Q Consensus 35 ~~~l~~g~-~------~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~------~~i~ 100 (839)
+.+++.|. . ..+..||..+++-.....-.....-.++++. .+ .+.+++| + .++.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-------~~-----~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-------NG-----KLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-------CC-----EEEEEccccCCCcccceEE
Confidence 34555555 4 4688999887743322222222235566665 33 4555554 4 3456
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCc-----EEEEecCCCceEEEEec
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS-----IRVWDISNSSIILEVHS 175 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~-----i~vwd~~~~~~~~~~~~ 175 (839)
.||..... +..+..+...+...-...+ +|.+.|+||.||. |..||..+.+-......
T Consensus 353 ~YD~~~~~-------------W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 353 RYDPRTNQ-------------WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred EecCCCCc-------------eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 66665443 5555555544433332322 7788889988864 77788766443221111
Q ss_pred CCceeEEEEeeccCCccceEEEEeecCC------eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGTIYN------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
........+. ..++.+.+.|+.++ .+..||+.+++... +
T Consensus 415 ~~~r~~~gv~----~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~-------------------------------~ 459 (571)
T KOG4441|consen 415 LTRRSGHGVA----VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL-------------------------------I 459 (571)
T ss_pred CcceeeeEEE----EECCEEEEEcCcCCCccccceEEEEcCCCCceee-------------------------------c
Confidence 1111111222 14577777777553 45667766332211 1
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEE
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRS-----ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA 324 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~ 324 (839)
..+..-.... +++. -++...+.|+.|+. |..+|..+.+. ..+ ..+....+.+..+...+...+.|
T Consensus 460 ~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W------~~v--~~m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 460 APMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW------TMV--APMTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred CCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCce------eEc--ccCccccccccEEEECCEEEEEe
Confidence 1111111111 1222 25566777776653 67788777554 111 12223334445555667778888
Q ss_pred eCCCe
Q 003208 325 GEDCT 329 (839)
Q Consensus 325 ~~dg~ 329 (839)
+.||.
T Consensus 530 G~~~~ 534 (571)
T KOG4441|consen 530 GFDGN 534 (571)
T ss_pred cccCc
Confidence 87753
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.42 E-value=6.4 Score=39.84 Aligned_cols=254 Identities=13% Similarity=0.123 Sum_probs=121.1
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+..|+.|. +| |.+++.........+.. ..+|..|.+. ++- ..+.+=.|+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl-------~~~----~~llvLsd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVL-------PEL----NLLLVLSDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEe-------ccc----CEEEEEcCCccEEEEchhhcccccc
Confidence 55666667 55 99999833332222222 2248888888 443 3444445699999998753311100
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-----ceEEEEecCCceeEEEEeecc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWG 188 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~s~~~~~ 188 (839)
. +..................+...+..........|+.+. ...|.+|..... +..+.+..+.. ..++.+.
T Consensus 73 ~-~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~--~~~i~~~- 147 (275)
T PF00780_consen 73 A-PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDP--PSSIAFL- 147 (275)
T ss_pred c-cccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCC--cEEEEEe-
Confidence 0 000000000000111222344444111111334555554 558888887653 34455554433 4455542
Q ss_pred CCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC
Q 003208 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (839)
Q Consensus 189 ~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 268 (839)
+..|+.|.. ....+.|+.++...+.. +................++..+... ++
T Consensus 148 ----~~~i~v~~~-~~f~~idl~~~~~~~l~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 200 (275)
T PF00780_consen 148 ----GNKICVGTS-KGFYLIDLNTGSPSELL---------------------DPSDSSSSFKSRNSSSKPLGIFQLS-DN 200 (275)
T ss_pred ----CCEEEEEeC-CceEEEecCCCCceEEe---------------------CccCCcchhhhcccCCCceEEEEeC-Cc
Confidence 456666654 44777787732211100 0000000000111122334444443 44
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeeccc
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~ 347 (839)
.+|++. |..-.+.|...... + . ..+. -...+.++++...+++..+.++ |.||++ +++.++.+....
T Consensus 201 e~Ll~~--~~~g~fv~~~G~~~------r--~-~~i~-W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 201 EFLLCY--DNIGVFVNKNGEPS------R--K-STIQ-WSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred eEEEEe--cceEEEEcCCCCcC------c--c-cEEE-cCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence 555543 34444555543321 1 0 0111 1235567777777888877654 999999 888888776543
No 378
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.33 E-value=8.3 Score=40.75 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=37.1
Q ss_pred cCccccccCCCc------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeee
Q 003208 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIR 58 (839)
Q Consensus 4 ~~i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~ 58 (839)
+.+.++|+.+++ ....+....+| |+ ++.++-..++.|.+++..+++..+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~s--P~----g~~~~~v~~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWS--PD----GKYIAFVRDNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE---SS----STEEEEEETTEEEEESSTTSEEEE
T ss_pred eeEEEEecCCCceEECcCCccccccceee--cC----CCeeEEEecCceEEEECCCCCeEE
Confidence 345677887765 12457889999 99 899999999999999988875543
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.27 E-value=7.9 Score=40.27 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=47.0
Q ss_pred CcceEEEee-C--CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCC
Q 003208 34 SLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (839)
Q Consensus 34 ~~~~l~~g~-~--~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~ 110 (839)
+.++|.++. + ..+.+.|+++++..+--..... ...+..++ |+++ .++-+..+..|+-.|+++.
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s-------~~~~---~~~Yv~~~~~l~~vdL~T~--- 112 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLS-------PDDR---ALYYVKNGRSLRRVDLDTL--- 112 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE--------TTSS---EEEEEETTTEEEEEETTT----
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-CccceEEe-------cCCC---eEEEEECCCeEEEEECCcC---
Confidence 457777777 4 5788889999887665543222 24456666 5552 4555667788888888763
Q ss_pred CCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE
Q 003208 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (839)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la 151 (839)
+....+....+++-...|...+ ++..++
T Consensus 113 ------------e~~~vy~~p~~~~g~gt~v~n~-d~t~~~ 140 (386)
T PF14583_consen 113 ------------EERVVYEVPDDWKGYGTWVANS-DCTKLV 140 (386)
T ss_dssp -------------EEEEEE--TTEEEEEEEEE-T-TSSEEE
T ss_pred ------------cEEEEEECCcccccccceeeCC-CccEEE
Confidence 2333344456677666665411 455443
No 380
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.25 E-value=0.82 Score=51.30 Aligned_cols=172 Identities=9% Similarity=0.067 Sum_probs=98.1
Q ss_pred cEEEEeCCCccEEEEEEcCCCCCCcc----eee--eEeec---------cceeEEeeEEEeecCCCeEEEEeCCCCcEEE
Q 003208 485 DWVALGDGKGNMTIVRVVGDVHTPQL----SFT--FTWSA---------GIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (839)
Q Consensus 485 ~~l~~g~~dg~i~l~~~~~~~~~~~~----~~~--~~~~~---------~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~ 549 (839)
++++++. .+.|.+|+++.-...+.. .+. ..... ..++.+.-+.++.--+..+|+.+..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 5666655 578999988654332211 000 00000 0122232322333336678999999999999
Q ss_pred eeecCCCCc---c--cccCCccceeeeeeccccccCceEEEEeee--cCCCEEEEecCCccEEEEecccccccCCCccce
Q 003208 550 WQLCDPFSS---V--CYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALH 622 (839)
Q Consensus 550 wd~~~~~~~---~--~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s--~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~ 622 (839)
|.++.-... . ..... .......+.|...-......+|+. ...++||+++....|.||-+.... .
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-------~- 199 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-------E- 199 (717)
T ss_pred EEHHHHHHHHHhhccccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc-------c-
Confidence 987532100 0 00000 000111122333445678999998 888999999999999998776420 0
Q ss_pred eecCcceeeecccCCCceeEEEEEeccCCce---EEEeecCcCcEEEEEEe
Q 003208 623 VEVSPLNYFKGAHGISTVSTLSVAKLRSNQT---EIRSTGGDGCICYLEYD 670 (839)
Q Consensus 623 ~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~---~l~s~~~Dg~i~iw~~~ 670 (839)
+.......... ..|-+|+|.+...+.. .|++++-.|.+-+|++.
T Consensus 200 -r~~~~~s~~~~---hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 200 -RFYHVPSHQHS---HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -ccccccccccc---cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 10010011123 4599999997664433 88999999999999883
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.23 Score=53.24 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=59.3
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
-.|.-+.|+| ..+++|++..+|.|.+..+. .+.+.++..|......++++ .+||+.||.|-.||+|++-|+.
T Consensus 21 ~~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCW---RPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeee---cCCCCEEEEEecCCeEEEEEcc
Confidence 4577899999 99999999999999998886 77777776454433345555 6899999999999999999998
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.13 E-value=5.1 Score=39.05 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.8
Q ss_pred ccCceEEEEeeecCCCEEEEecCCccE-EEEecccc
Q 003208 578 CFGARIMCLDASFEDEVLFCGDLRGNL-VLFPLLRD 612 (839)
Q Consensus 578 ~h~~~I~~l~~s~~~~~la~gs~dg~i-~iw~~~~~ 612 (839)
+...-|-+++...+..+++.-|-.|+. .+||...+
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 345557888888877787777777665 58998864
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.12 E-value=5.1 Score=45.16 Aligned_cols=110 Identities=9% Similarity=0.100 Sum_probs=62.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcccCccCCCCCceeeeceEe-eccccceEEeEEC-CCEEEEEeCCCe
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARI---WEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLT-DSFIITAGEDCT 329 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~i---wd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~-~~~l~s~~~dg~ 329 (839)
..+.|..+.|+|||.+++... ++.|.+ -....+.. +...+..+ .+-...+.++.|. +..|+.+..++.
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~------~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY------ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce------eecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 356799999999999887766 467766 33222221 11111112 2223345778888 555667666666
Q ss_pred EEEEcC--CCceEEEeecc--cCCceEEEEEccCCCEEEEEeCCCcEEE
Q 003208 330 CRVWGS--DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (839)
Q Consensus 330 i~vw~~--~~~~~~~~~~h--~~~~i~~~~~~~~~~~l~t~~~dg~i~i 374 (839)
-.+|.+ +|.....+... .. ++.+++-+++ .++....+|.+.+
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~-~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSA-PVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred CceEEEecCCccccccCCCCccC-ceEEEecCCc--eEEEEcCCceEEe
Confidence 666665 55544332221 23 5777776653 4555566664443
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=1.5 Score=50.55 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=65.1
Q ss_pred cceEEEee-CCeeEEEECCCCeeee-EEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIR-PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~ 112 (839)
..+++.|+ .|.+-..|+.. .+-. .-..+...+|.+++|+ .+|. .++++.++|.|.+||+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn-------~dg~---~l~~G~~~G~V~v~D~~~------ 161 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFN-------QDGS---LLLAGLGDGHVTVWDMHR------ 161 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEec-------CCCc---eeccccCCCcEEEEEccC------
Confidence 34566666 68888888653 2111 1112234589999999 7873 555666799999999986
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
.+..+.+..|..+.+++-++-...++..+.++...|. +|..
T Consensus 162 ---------~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 ---------AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ---------CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3455556566666666555543335666777766665 6665
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.77 E-value=12 Score=40.61 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=81.8
Q ss_pred eeeEEEEecCCCCCCCcceEEEee--CC----eeEEEECCCCeeeeEE-eeecCceEEeEEecccccccCCCccceeeEE
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGS--GS----QVLLYDLEAGTLIRPF-QVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~--~~----~v~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
.+...++| || +++++-+. +| .|+|+|+++|+.+... ... .-..+.|. +|++ .++
T Consensus 125 ~~~~~~~S--pd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~~~~W~-------~d~~---~~~ 185 (414)
T PF02897_consen 125 SLGGFSVS--PD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFSSVSWS-------DDGK---GFF 185 (414)
T ss_dssp EEEEEEET--TT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESEEEEEC-------TTSS---EEE
T ss_pred EeeeeeEC--CC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccceEEEe-------CCCC---EEE
Confidence 44567888 98 67776654 33 6999999999776532 221 12238898 7764 444
Q ss_pred EEEc-----------CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC---C-
Q 003208 92 ALFG-----------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---D- 156 (839)
Q Consensus 92 ~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~---d- 156 (839)
.+.- ...|..|++.+... .-.++........+...+..++ ++++|+.... +
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~---d~~~l~i~~~~~~~~ 251 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSK---DGRYLFISSSSGTSE 251 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-T---TSSEEEEEEESSSSE
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecC---cccEEEEEEEccccC
Confidence 4432 22366666654320 0123333333333366788888 8888765432 2
Q ss_pred CcEEEEecCCC----ceEEEEecCCceeEEEEeeccCCccceEEEEe--ecCCeEEEEEee
Q 003208 157 NSIRVWDISNS----SIILEVHSPERCLLYSMKLWGDNLEALRIASG--TIYNEIIVWKVD 211 (839)
Q Consensus 157 ~~i~vwd~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg--~~dg~i~vw~~~ 211 (839)
..+.+.++... .....+........+.+..+ .+..++.+. ..++.|...++.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETT
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEeccc
Confidence 45788888764 33444444443334444331 222344442 234555555554
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.7 Score=48.65 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=78.2
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCc--EE-----EEEeCCCcEEEEecCCC-c-eEEEEecCC--ceeEEEEeeccCC
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR--SL-----AIGCSDNSIRVWDISNS-S-IILEVHSPE--RCLLYSMKLWGDN 190 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~--~l-----as~~~d~~i~vwd~~~~-~-~~~~~~~~~--~~~~~s~~~~~~~ 190 (839)
++.+...+-|.+ |+-+.+.| +.+ .| +.|-.++.|+-||.+-. . .+...+.+. +..-+++.. .
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~---d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a---T 438 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITP---DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA---T 438 (644)
T ss_pred ceeeeEeeccCC-cceeeccC---CcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee---e
Confidence 677777777766 77777777 332 11 34667899999998632 2 222222222 111122111 1
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
-...+||+|+.+|.|++||-- .......+.|-..+|..|..+.+|++
T Consensus 439 T~sG~IvvgS~~GdIRLYdri---------------------------------~~~AKTAlPgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 439 TESGYIVVGSLKGDIRLYDRI---------------------------------GRRAKTALPGLGDAIKHVDVTADGKW 485 (644)
T ss_pred cCCceEEEeecCCcEEeehhh---------------------------------hhhhhhcccccCCceeeEEeeccCcE
Confidence 234589999999999999964 22233346677889999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 003208 271 LVSVSDDRSARIWEV 285 (839)
Q Consensus 271 l~s~s~d~~i~iwd~ 285 (839)
|+..+. ..+.+-+.
T Consensus 486 il~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 486 ILATCK-TYLLLIDT 499 (644)
T ss_pred EEEecc-cEEEEEEE
Confidence 877765 45555554
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.66 E-value=0.25 Score=46.18 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=66.3
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCceEEE
Q 003208 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKM 342 (839)
Q Consensus 267 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~~~~ 342 (839)
-+..+++|+.+|.|.+|+...... ... ....-...|.++--. +.+..+++.||.||.|+. .++.+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~-----~~d----~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGA-----HSD----RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY 139 (238)
T ss_pred cCceEEeecccceEEEecCCccch-----HHH----hhhcccccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence 346799999999999998873222 000 111111223332222 358899999999999999 6677666
Q ss_pred eecccCCceEEEEEccCCCEEEEE--eCCCcEEEEecC
Q 003208 343 IKEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQ 378 (839)
Q Consensus 343 ~~~h~~~~i~~~~~~~~~~~l~t~--~~dg~i~iw~~~ 378 (839)
...|...++..+.....+++++.. +.|..++.|++.
T Consensus 140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 666663345555555556666666 777777777774
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.65 E-value=7.8 Score=38.04 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=102.9
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
..-..+.|.. ++.++-+.+.-| .|+.+|+.+++.+....-+..-..=.+..+ ++.+..--=.++...+||.
T Consensus 45 aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEcc
Confidence 3456788867 788877777655 799999999998877664443222122221 1222222235677888887
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
. +.+.+..+. ..+.=.+|+ .+++.|+.......++++|..+.+.
T Consensus 118 ~---------------------------------tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 118 N---------------------------------TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp T---------------------------------TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred c---------------------------------cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 7 556666554 234556676 3566777776677899999877544
Q ss_pred CCCCCceeeeceEeecccc---ceEEeEECCC-EEEEEeCCCeEEEEcC-CCceEEEeec------------c--cCCce
Q 003208 291 KDSDSIEEVGSSVLYGHNA---RVWDCCLTDS-FIITAGEDCTCRVWGS-DGKQLKMIKE------------H--IGRGI 351 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~l~s~~~dg~i~vw~~-~~~~~~~~~~------------h--~~~~i 351 (839)
.+.+. ...... .+.-+.|.+. ..+-.-....|...|. +|+.+..+.. . ...-.
T Consensus 162 -----~~~i~---V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 162 -----VRTIQ---VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -----EEEEE----EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred -----EEEEE---EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 33332 112222 3444566533 3334445556677777 7776665421 0 01236
Q ss_pred EEEEEccCCCEEEEEeC
Q 003208 352 WRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~ 368 (839)
..||++|....+...|.
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 78999988766555553
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=0.28 Score=55.95 Aligned_cols=108 Identities=12% Similarity=0.192 Sum_probs=70.7
Q ss_pred CCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccccc
Q 003208 534 GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDL 613 (839)
Q Consensus 534 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~ 613 (839)
-+..++.|+..|.+...|...... +......-..+|++++|+.+|++++.|-.+|.|.+||..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~- 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA- 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-
Confidence 345678888888888888765321 00111123678999999999999999999999999999853
Q ss_pred ccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecC
Q 003208 614 LNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (839)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 672 (839)
+++..+. -|+ .+++++-+.....++..++|+.+-|. +|++.-.
T Consensus 163 ------------k~l~~i~-e~~-ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 163 ------------KILKVIT-EHG-APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred ------------cceeeee-ecC-CccceEEEEEEeCCCcEEEEccCCCc--eEEEEec
Confidence 1222221 222 23444444433355567888888887 7765543
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.56 E-value=6.1 Score=44.52 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=79.4
Q ss_pred EEEEecCCeEEEEecc-c--eEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCcc-----
Q 003208 424 CLHLTSEDTLYIATNH-G--YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN----- 495 (839)
Q Consensus 424 ~~~~~~~~~~~~~~~~-g--~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~----- 495 (839)
++++..+..+++|+.+ | .+.....++.....|..+........-..+... ++.+.|+|+.||.
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---------~g~iYavGG~dg~~~l~s 397 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---------DGKLYAVGGFDGEKSLNS 397 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---------CCEEEEEecccccccccc
Confidence 4444444345555555 2 334445667777778876444433333333332 3368889999874
Q ss_pred EEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCc------EEEeeecCCCCcccccCCcccee
Q 003208 496 MTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGR------LKLWQLCDPFSSVCYESSKTNNV 569 (839)
Q Consensus 496 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~------i~~wd~~~~~~~~~~~~~~~~~~ 569 (839)
+..||..+.+....... . . ....+.....+|++.++|+.++. +..||..+.. +..
T Consensus 398 vE~YDp~~~~W~~va~m------~--~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~----------W~~ 458 (571)
T KOG4441|consen 398 VECYDPVTNKWTPVAPM------L--T-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT----------WTL 458 (571)
T ss_pred EEEecCCCCcccccCCC------C--c-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc----------eee
Confidence 55555544332211111 0 1 11222334568889999987664 5566655432 111
Q ss_pred eeeeccc--c-ccCceEEEEeeecCCCEEEEecCCcc-----EEEEeccc
Q 003208 570 FLVAEFS--S-CFGARIMCLDASFEDEVLFCGDLRGN-----LVLFPLLR 611 (839)
Q Consensus 570 ~~~~~~~--~-~h~~~I~~l~~s~~~~~la~gs~dg~-----i~iw~~~~ 611 (839)
. +++. + +|. ...-++.+.|.|+.|+. |..||...
T Consensus 459 ~--~~M~~~R~~~g------~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 459 I--APMNTRRSGFG------VAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred c--CCcccccccce------EEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 1 1221 1 222 22346889999998874 55676664
No 391
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.47 E-value=1.5 Score=48.81 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=72.5
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
++..++.+ ...+.|||...+.+..+-.......|.++.|... |||+ ..++++-.+.|.++.-..-. ...
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-----~d~q---siLaVGf~~~v~l~~Q~R~d--y~~ 110 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-----PDGQ---SILAVGFPHHVLLYTQLRYD--YTN 110 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-----CCCC---EEEEEEcCcEEEEEEccchh--hhc
Confidence 45666655 5799999999887555444334457999999866 8886 78888889999998653111 000
Q ss_pred CCCccccceeeeEe--ccCCC-cceEEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 114 YQPETCVNLSLVQS--LPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 114 ~~~~~~~~~~~~~~--~~~h~-~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
..| .+.++.. +..|+ .+|.+..|.+ +|.+++.+ ++.+.|+|-
T Consensus 111 ~~p----~w~~i~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGP----SWAPIRKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCc----ccceeEEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEECC
Confidence 011 1222222 23444 6899999998 88766544 467888875
No 392
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=14 Score=39.46 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=115.8
Q ss_pred EEEEecCCCCCCCcc-eEEEe-eCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE--cCc
Q 003208 22 ALCFVHLPSHLSSLP-FLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--GEK 97 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~-~l~~g-~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~--~~~ 97 (839)
.++++ ++ +. ..+.. ..+.|.+.|..+-+.+....... ....++++ ++++. .+++-. +++
T Consensus 78 ~i~v~--~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~-------~~~~~--vYV~n~~~~~~ 140 (381)
T COG3391 78 GVAVN--PA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVD-------PDGKY--VYVANAGNGNN 140 (381)
T ss_pred ceeeC--CC----CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEEC-------CCCCE--EEEEecccCCc
Confidence 56666 66 44 33333 36899999988877777777644 47889999 77741 333334 257
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE-eCCCcEEEEecCCCceEE-E---
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIIL-E--- 172 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~-~~d~~i~vwd~~~~~~~~-~--- 172 (839)
++.+.|-.+. +.......-..+ ..+++.| +++.++.+ ..++.|.+.|.......+ .
T Consensus 141 ~vsvid~~t~---------------~~~~~~~vG~~P-~~~a~~p---~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~ 201 (381)
T COG3391 141 TVSVIDAATN---------------KVTATIPVGNTP-TGVAVDP---DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGS 201 (381)
T ss_pred eEEEEeCCCC---------------eEEEEEecCCCc-ceEEECC---CCCeEEEEecCCCeEEEEeCCCcceecccccc
Confidence 7777776642 333333222233 8899999 99866555 468999999977665553 1
Q ss_pred -EecCCceeEEEEeeccCCccceEEEEeecC---CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 173 -VHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 173 -~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
+...... +.+.+ ++++.++...... +.+...|.. ....
T Consensus 202 ~~~~~~~P--~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~---------------------------------~~~v 243 (381)
T COG3391 202 LVGVGTGP--AGIAV---DPDGNRVYVANDGSGSNNVLKIDTA---------------------------------TGNV 243 (381)
T ss_pred ccccCCCC--ceEEE---CCCCCEEEEEeccCCCceEEEEeCC---------------------------------CceE
Confidence 1111111 11111 4666655443332 577777766 3332
Q ss_pred eEE-E-ecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccCcc
Q 003208 249 LFR-L-VGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYW 290 (839)
Q Consensus 249 ~~~-~-~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~ 290 (839)
... . .+-. ....+..+|+|..+.+... .+.+.+-|......
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 222 1 1222 5667889999998888744 47788888776544
No 393
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.13 E-value=14 Score=39.44 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=87.7
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC----
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---- 266 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---- 266 (839)
.+...|++|+..|.++||++..+...+ ...+.. ..-..+|..|..-+
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~----------------------------~~lllE-~~l~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP----------------------------EDLLLE-TQLKDPILQVECGKFVSG 85 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC----------------------------ccEEEE-EecCCcEEEEEeccccCC
Confidence 356789999999999999986222111 111111 12346777776532
Q ss_pred -CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc--eEEeE---EC----CCEEEEEeCCCeEEEEcCC
Q 003208 267 -CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCC---LT----DSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 267 -~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~---~~----~~~l~s~~~dg~i~vw~~~ 336 (839)
+...||. =--+.+.+|.+.......... ..........|.-. ...+. |. ..+++.-+.||.+.+++-+
T Consensus 86 ~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g-~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 86 SEDLQLAV-LHPRKLSVYSVSLVDGTVEHG-NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred CCcceEEE-ecCCEEEEEEEEecCCCcccC-cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 2234444 344677888874322210000 00110133333322 22222 32 2688999999999999985
Q ss_pred CceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 337 ~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.-....+-...- -.-.+++.+....+++++.+..+..|..+
T Consensus 164 ~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 164 SFAFSRFLPDFL-LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cEEEEEEcCCCC-CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 544333222211 12247888888899999999999999863
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.97 E-value=16 Score=39.73 Aligned_cols=161 Identities=12% Similarity=0.122 Sum_probs=88.3
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEee---CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~---~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
..||..+||. | |..++++.- +|.+++=| ...+..|+ .|+++.|.|......| .++|+
T Consensus 19 iHPvhGlaWT---D---GkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~p------aLLAV 78 (671)
T PF15390_consen 19 IHPVHGLAWT---D---GKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTP------ALLAV 78 (671)
T ss_pred hccccceEec---C---CCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCC------ceEEE
Confidence 4688899996 2 345555533 45555544 23455554 3999999965433333 68999
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC-CCcc--eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHW--VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~--I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~ 170 (839)
-..+.|.||.+......... +...++..- -.-+ -..+.|+| ....|+.-.....=.+.++......
T Consensus 79 QHkkhVtVWqL~~s~~e~~K--------~l~sQtcEi~e~~pvLpQGCVWHP---k~~iL~VLT~~dvSV~~sV~~d~sr 147 (671)
T PF15390_consen 79 QHKKHVTVWQLCPSTTERNK--------LLMSQTCEIREPFPVLPQGCVWHP---KKAILTVLTARDVSVLPSVHCDSSR 147 (671)
T ss_pred eccceEEEEEeccCcccccc--------ceeeeeeeccCCcccCCCcccccC---CCceEEEEecCceeEeeeeeeCCce
Confidence 99999999999743311111 111111110 0112 24688999 8887776554444345555433222
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEee
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~ 211 (839)
.+..-.....+.+.+| ..||.+|+.+ +..=.-++||-.
T Consensus 148 VkaDi~~~G~IhCACW---T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 148 VKADIKTSGLIHCACW---TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeccCCceEEEEEe---cCcCCEEEEEeCCeEEEEEecCc
Confidence 2222233344555555 4677766654 333445677744
No 395
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=8.7 Score=35.69 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=60.8
Q ss_pred cceEEE-ee--CCeeEEEECCCCeeeeEEeeecCceEEe--EEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCC
Q 003208 35 LPFLLA-GS--GSQVLLYDLEAGTLIRPFQVFHGIRLHG--ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (839)
Q Consensus 35 ~~~l~~-g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~--i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~ 109 (839)
+.++.+ |. ...|++||+.+|+.+.+..... ..+.+ |.-. .|. .+..+|.++....+|.++
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~-------gd~----~y~LTw~egvaf~~d~~t--- 120 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKL-------GDY----FYQLTWKEGVAFKYDADT--- 120 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeec-------cce----EEEEEeccceeEEEChHH---
Confidence 445554 33 4789999999999887766542 23443 3333 332 788899999999999875
Q ss_pred CCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
++.+..+. ..+.=+.++- ++..|..+....+++.-|.++.....+
T Consensus 121 ------------~~~lg~~~-y~GeGWgLt~-----d~~~LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 121 ------------LEELGRFS-YEGEGWGLTS-----DDKNLIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred ------------hhhhcccc-cCCcceeeec-----CCcceEeeCCceEEEecCHHHhhhcce
Confidence 22222221 1122233433 444455554455666666665544433
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.60 E-value=21 Score=38.88 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=65.3
Q ss_pred cceEEEEEeeccC-CCcEEEEEeCCCcEEEEecCC-----CceEEE----EecCCceeEEEEeeccCCccceEEEEeecC
Q 003208 133 HWVFDVCFLKVCN-GNRSLAIGCSDNSIRVWDISN-----SSIILE----VHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 133 ~~I~~~~~~~~~~-~~~~las~~~d~~i~vwd~~~-----~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
..|.++.|.|... +...|........|.||.+.. .+.+.. +..+....--.+.| -|....|+.-+..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW---HPk~~iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW---HPKKAILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccc---cCCCceEEEEecC
Confidence 4589999998532 222344445578899999852 222211 11111000001122 2455566655544
Q ss_pred CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEE
Q 003208 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~ 281 (839)
..-.+.++... ..+....++ -.+-|.|.+|.+||++|+.+-. .=+-+
T Consensus 134 dvSV~~sV~~d-------------------------------~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSy 181 (671)
T PF15390_consen 134 DVSVLPSVHCD-------------------------------SSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSY 181 (671)
T ss_pred ceeEeeeeeeC-------------------------------CceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEE
Confidence 44445565510 222233343 4588999999999988766533 34567
Q ss_pred EEEcccC
Q 003208 282 IWEVRAE 288 (839)
Q Consensus 282 iwd~~~~ 288 (839)
+||-...
T Consensus 182 iWd~~qK 188 (671)
T PF15390_consen 182 IWDSAQK 188 (671)
T ss_pred EecCchh
Confidence 8886554
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.42 E-value=20 Score=37.36 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=33.9
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCee---eeEEe---eecCceEEeEEeccc
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL---IRPFQ---VFHGIRLHGISCNFI 76 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~---~~~~~---~~~~~~v~~i~~~~~ 76 (839)
-++|+|. || ++++++-..|.|++++ .++.. +..+. .......++|+++|.
T Consensus 4 P~~~a~~--pd----G~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFL--PD----GRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEE--TT----SCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEe--CC----CcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 4789999 99 8898887799999999 55554 22221 122335799999953
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.07 E-value=4.1 Score=45.55 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeee--cCCCEEEEecCCccEEEEeccc
Q 003208 534 GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 534 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s--~~~~~la~gs~dg~i~iw~~~~ 611 (839)
-++..++-+....+.|||......+ ....| .....|..++|. |+++.+.+-+-...|.+|.-.+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE------------~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLE------------YEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEE------------Eeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence 4455445445557999999866421 11122 237789999986 7888777777788898886543
Q ss_pred cc-ccCCCccceeecCcceeee-cccCCCceeEEEEEeccCCceEEEeecCcCcEEEEE
Q 003208 612 DL-LNDKSVALHVEVSPLNYFK-GAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 612 ~~-~~~~~~~~~~~~~~~~~~~-~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~ 668 (839)
.. ....+ ...++..+. ..|...+|.+..|. +++..++.+|. .+.|++
T Consensus 106 ~dy~~~~p-----~w~~i~~i~i~~~T~h~Igds~Wl---~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 106 YDYTNKGP-----SWAPIRKIDISSHTPHPIGDSIWL---KDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred hhhhcCCc-----ccceeEEEEeecCCCCCccceeEe---cCCeEEEEeCC--EEEEEC
Confidence 21 11111 122332221 13334579999999 77666666554 466664
No 399
>PRK13684 Ycf48-like protein; Provisional
Probab=90.87 E-value=11 Score=39.32 Aligned_cols=158 Identities=9% Similarity=-0.056 Sum_probs=85.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
..+.+.++.+. |+ +.++++|..|.+..-.-..++.-..+.......++++.+. +++ .+++++.
T Consensus 171 ~~g~~~~i~~~--~~----g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-------~~g----~~~~vg~ 233 (334)
T PRK13684 171 AAGVVRNLRRS--PD----GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-------PDG----NLWMLAR 233 (334)
T ss_pred CcceEEEEEEC--CC----CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-------CCC----CEEEEec
Confidence 34668899998 88 7888888877554321122333333333444568899998 776 5666666
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEec-cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.+.+++=.-+.+. . ++.+..- ..-...+.++.+.| ++..++. +.+|.+. .....++......
T Consensus 234 ~G~~~~~s~d~G~----s--------W~~~~~~~~~~~~~l~~v~~~~---~~~~~~~-G~~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 234 GGQIRFNDPDDLE----S--------WSKPIIPEITNGYGYLDLAYRT---PGEIWAG-GGNGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred CCEEEEccCCCCC----c--------cccccCCccccccceeeEEEcC---CCCEEEE-cCCCeEE-EeCCCCCCCeECC
Confidence 6766432222111 1 2211110 11123578888988 7776554 4566554 3444455444433
Q ss_pred c--CCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 175 S--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 175 ~--~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
. ......+.+.+. ++...+..+..|.|.-|+-.
T Consensus 297 ~~~~~~~~~~~~~~~----~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 297 VGEEVPSNFYKIVFL----DPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred cCCCCCcceEEEEEe----CCCceEEECCCceEEEecCC
Confidence 2 122235555552 23344555677888877643
No 400
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.71 E-value=10 Score=32.69 Aligned_cols=110 Identities=11% Similarity=0.148 Sum_probs=66.3
Q ss_pred cceEEEee-CCeeEEEECCCC--------eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEee
Q 003208 35 LPFLLAGS-GSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~ 105 (839)
.+-|+++. .+.|.|++.... ..+..+...+ .|++|+-.+.. |+.+ ...|.++...++..||+.
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~--~italaaG~l~----~~~~--~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ--EITALAAGRLK----PDDG--RDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEECCC--ceEEEEEEecC----CCCC--cCEEEEeccceEEEEEcc
Confidence 44555555 899999987632 2445555422 58888766432 2211 156777888999999998
Q ss_pred ccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC-CCcEEEEEeCCCcEEEEecCCCce
Q 003208 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~-~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
... -..++.-.+.|.++.+-.... ...+++.| ....|.-+|.+..+.
T Consensus 82 ~N~----------------d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNS----------------DLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred cCc----------------hhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 533 123345557788888855332 23444444 466777777654443
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.58 E-value=0.59 Score=52.32 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=62.2
Q ss_pred CccEEEEEEcC--CCCCCcceeeeEeeccceeEEeeEEEe-ecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCcccee
Q 003208 493 KGNMTIVRVVG--DVHTPQLSFTFTWSAGIERQLLGTYWC-KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (839)
Q Consensus 493 dg~i~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 569 (839)
-|.+.+|+++- ++..+...+...-... ..+.-+.|| +.+...++..+..++.|++...+....
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~g--s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------------ 217 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYG--SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR------------ 217 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCC--CCcceeeecccccccceeeeccCCCceeEeeechHHH------------
Confidence 36778888753 3334443333222222 122233455 334567788888899999888775431
Q ss_pred eeeeccccccCceEEEEe-----------eecCCCEEEEecCCccEEEEeccc
Q 003208 570 FLVAEFSSCFGARIMCLD-----------ASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 570 ~~~~~~~~~h~~~I~~l~-----------~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
.+.++|...++.++ .||||+.+|.+..||.++.|.+.-
T Consensus 218 ----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 218 ----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 12223555555444 689999999999999999887753
No 402
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=29 Score=37.08 Aligned_cols=261 Identities=11% Similarity=0.083 Sum_probs=144.2
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCcccccee
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 123 (839)
..+.+++..+.+....+..+. ...++... +++. ..+++-.....+...+.. . ..
T Consensus 11 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-------~~g~--~~~v~~~~~~~~~~~~~~-~--------------n~ 64 (381)
T COG3391 11 ADVSVINTGTNKVTAAISLGR--GPGGVAVN-------PDGT--QVYVANSGSNDVSVIDAT-S--------------NT 64 (381)
T ss_pred CceEEEeecccEEEEEeecCC--CCceeEEc-------CccC--EEEEEeecCceeeecccc-c--------------ce
Confidence 347778877777666666543 36677777 6652 123333333334333332 1 11
Q ss_pred eeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec-
Q 003208 124 LVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI- 201 (839)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~- 201 (839)
.......-...-..+++++ .+. ..++...++.|.+.|..+............. ..+.+ ++++..+..+..
T Consensus 65 ~~~~~~~g~~~p~~i~v~~---~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P--~~~~~---~~~~~~vYV~n~~ 136 (381)
T COG3391 65 VTQSLSVGGVYPAGVAVNP---AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGP--VGLAV---DPDGKYVYVANAG 136 (381)
T ss_pred eeeeccCCCccccceeeCC---CCCeEEEecCCCCeEEEEcCcccceeeEeeeccCC--ceEEE---CCCCCEEEEEecc
Confidence 1111111102234677777 666 4455555789999998777776665533321 12222 466655555443
Q ss_pred --CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe-CCC
Q 003208 202 --YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDR 278 (839)
Q Consensus 202 --dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~ 278 (839)
++.+.+.|.. +.+.+.....-..+ ..++++|++..++.+. .++
T Consensus 137 ~~~~~vsvid~~---------------------------------t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 137 NGNNTVSVIDAA---------------------------------TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred cCCceEEEEeCC---------------------------------CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCC
Confidence 6777777766 45555443332234 8999999999776665 788
Q ss_pred cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC---CeEEEEcC-CCceEEE-eecccCCce
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKM-IKEHIGRGI 351 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~-~~~~~~~-~~~h~~~~i 351 (839)
.|.+.|...... .+ -.......-......+.+. +.++...... +.+.+.|. .+..... ...... ..
T Consensus 183 ~v~vi~~~~~~v-----~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~ 255 (381)
T COG3391 183 TVSVIDTSGNSV-----VR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-AP 255 (381)
T ss_pred eEEEEeCCCcce-----ec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CC
Confidence 999999766543 10 0000011112223445554 5544443333 58888888 4443333 222221 24
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEecCC
Q 003208 352 WRCLYDSLSSLLVTAGF-DSAIKVHQFQA 379 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~-dg~i~iw~~~~ 379 (839)
..+.++|+|+.+.+... .+.+.+.|...
T Consensus 256 ~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 256 RGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 56789999998887744 47888888754
No 403
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.09 E-value=31 Score=37.26 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=50.6
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE-eCCCc--EEEEecCCCceEEEE
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNS--IRVWDISNSSIILEV 173 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~-~~d~~--i~vwd~~~~~~~~~~ 173 (839)
..+.++++..+. ...+..+.++.. .-+|+| +|+.||-+ ..|+. |.+.|+...+..+ +
T Consensus 218 ~~i~~~~l~~g~-------------~~~i~~~~g~~~---~P~fsp---DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L 277 (425)
T COG0823 218 PRIYYLDLNTGK-------------RPVILNFNGNNG---APAFSP---DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L 277 (425)
T ss_pred ceEEEEeccCCc-------------cceeeccCCccC---CccCCC---CCCEEEEEECCCCCccEEEEcCCCCccee-c
Confidence 468888988755 344444555554 357899 99877654 34554 6667776666333 3
Q ss_pred ecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKV 210 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~ 210 (839)
..... ....-. .+|+|..|+-. +..|.-.||-.
T Consensus 278 t~~~g-i~~~Ps---~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 278 TNGFG-INTSPS---WSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred ccCCc-cccCcc---CCCCCCEEEEEeCCCCCcceEEE
Confidence 22211 111222 26888877764 44555444443
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.83 E-value=15 Score=34.86 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=60.2
Q ss_pred eEEEEEeccCCceEEEeecCcCcEEEEEEec--CCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEE
Q 003208 641 STLSVAKLRSNQTEIRSTGGDGCICYLEYDK--DRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFII 718 (839)
Q Consensus 641 t~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 718 (839)
+.|+|.. ....+-++-+-+..|.-|+.+- +.. .....+-+++.....+...++.++-|.++.++++-|.++.+..
T Consensus 161 Ngl~Wd~--d~K~fY~iDsln~~V~a~dyd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 161 NGLAWDS--DAKKFYYIDSLNYEVDAYDYDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred ccccccc--cCcEEEEEccCceEEeeeecCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 4577772 3345566777788888898543 322 2223333444344555556666767888999999999999999
Q ss_pred EeccCccEEEEEe
Q 003208 719 WNLITEAKVVQIP 731 (839)
Q Consensus 719 w~~~~~~~~~~~~ 731 (839)
.|+++++.|..+.
T Consensus 238 ~dp~tGK~L~eik 250 (310)
T KOG4499|consen 238 VDPTTGKILLEIK 250 (310)
T ss_pred ECCCCCcEEEEEE
Confidence 9999999888763
No 405
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.21 E-value=42 Score=37.59 Aligned_cols=109 Identities=9% Similarity=0.000 Sum_probs=61.3
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEe----------EEecccccccCCCccceeeEEEEEcCcEEEEEEe
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG----------ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFEL 104 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~----------i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~ 104 (839)
+.+.+++.++.|+-.|.++|+++-++.......+.. +++. ++ .+++...++.+.-+|.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--------~~----~v~v~t~dg~l~ALDa 137 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--------DG----KVFFGTLDARLVALDA 137 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--------CC----EEEEEcCCCEEEEEEC
Confidence 445555557899999999999998876422111111 1111 22 5666667888888887
Q ss_pred eccCCCCCCCCCccccceeeeEecc--CCC--cceEEEEEeeccCCCcEEEEEe------CCCcEEEEecCCCceEEEEe
Q 003208 105 NFELSPNSQYQPETCVNLSLVQSLP--RLS--HWVFDVCFLKVCNGNRSLAIGC------SDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~--~h~--~~I~~~~~~~~~~~~~~las~~------~d~~i~vwd~~~~~~~~~~~ 174 (839)
.+++ .+-... .+. ..+++--... ++ .++.+. .+|.|..+|.++++.+-+..
T Consensus 138 ~TGk---------------~~W~~~~~~~~~~~~~tssP~v~---~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 138 KTGK---------------VVWSKKNGDYKAGYTITAAPLVV---KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCCC---------------EEeecccccccccccccCCcEEE---CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 7643 222211 111 1121111111 33 444443 26889999999999876654
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=5.6 Score=46.37 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 318 (839)
-....++++|+|.|+.++.|-..|++.-|...-... ..+..-... ...+|.++.|..
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik------~~ip~Pp~~-e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK------SEIPEPPVE-ENYRVLSVTWLS 253 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeeccccee------ecccCCCcC-CCcceeEEEEec
Confidence 356789999999999999999999999887654322 111000111 156789999973
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.71 E-value=0.14 Score=57.06 Aligned_cols=292 Identities=13% Similarity=0.151 Sum_probs=135.9
Q ss_pred CCeeEEEECCCCee-eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 43 GSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 43 ~~~v~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.+.+++=|..+... -.-++++.+ .|-.|+|.- ...|.+ . -.-|.+.||+++.-. ++. +|
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G-~v~dl~fah---~~~pk~----~----~~vg~lfVy~vd~l~--G~i-q~----- 169 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPG-GVGDLQFAH---TKCPKG----R----RLVGELFVYDVDVLQ--GEI-QP----- 169 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCC-Ccccccccc---cCChHH----H----HHhhhhheeehHhhc--ccc-cc-----
Confidence 45666666544321 122344544 377777752 122332 1 112778999987522 110 00
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEe--------eccCCccc
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK--------LWGDNLEA 193 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~--------~~~~~~~~ 193 (839)
.-.++....-...+.-+.|.|+-.+.-++..+-.+++|++.++.+... ..+.+|... ...++ +...++||
T Consensus 170 ~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~-~~d~a~~~~g~~~l~~lSpDG 247 (1283)
T KOG1916|consen 170 QLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQR-VTDMAFFAEGVLKLASLSPDG 247 (1283)
T ss_pred ceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCC-cccHHHHhhchhhheeeCCCC
Confidence 111222222223334455555333666777777888888876654321 011111110 00000 11137999
Q ss_pred eEEEEeecCCeEEEEEeec-cccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEE
Q 003208 194 LRIASGTIYNEIIVWKVDW-EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (839)
Q Consensus 194 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 272 (839)
..++.+..||.++.|.+.- ++. ..+....|+.......++.+ .|+..+.-+....- .+++
T Consensus 248 tv~a~a~~dG~v~f~Qiyi~g~~-----------------~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w-~~~I 308 (1283)
T KOG1916|consen 248 TVFAWAISDGSVGFYQIYITGKI-----------------VHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKW-VLRI 308 (1283)
T ss_pred cEEEEeecCCccceeeeeeeccc-----------------cHhhhhccCCCCCCCceeee-eccccccCCcccee-EEEE
Confidence 9999999999999998761 111 01122233332222222222 23332222221111 2344
Q ss_pred EEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeE---ECCCEEEEEeCCCeEEEEcC-CCceEEEeeccc
Q 003208 273 SVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (839)
Q Consensus 273 s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~ 347 (839)
+++ ..+.+++|.-...++.....+..+. ....|...|..+. |.-..+++-..+++|.+|.- .-........|.
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~~d~v~--iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~ 386 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKLIDGVQ--IVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHD 386 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhcccceE--eecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhh
Confidence 444 4567999998776663111112121 2225555555432 22345667778888888865 222222233343
Q ss_pred CCceEEEEE--cc---CCCEEEEEeC-CCcEEEEec
Q 003208 348 GRGIWRCLY--DS---LSSLLVTAGF-DSAIKVHQF 377 (839)
Q Consensus 348 ~~~i~~~~~--~~---~~~~l~t~~~-dg~i~iw~~ 377 (839)
+.+|.+.-+ +| +...+.+|+. +..+++|-.
T Consensus 387 ~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s 422 (1283)
T KOG1916|consen 387 GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVS 422 (1283)
T ss_pred cceeccccccccCCCccccccccCCcchhhhhhhhh
Confidence 334544222 33 2234555554 445666655
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.36 E-value=39 Score=36.16 Aligned_cols=172 Identities=13% Similarity=0.220 Sum_probs=98.7
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-----eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
.|++...+.....+...++.|+ .|.++||+....+ ++.+.+ -..+|..|..-.. ..+++. ..||+=
T Consensus 23 ~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F--~s~~~~----~~LaVL 94 (418)
T PF14727_consen 23 GSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKF--VSGSED----LQLAVL 94 (418)
T ss_pred ceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccc--cCCCCc----ceEEEe
Confidence 4555542221122356777777 9999999986543 233333 2457888886521 111232 688888
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC--CCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN--GNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~--~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
.-+.+.||.+...... ...+....++++..-.- ......+++-|... ..+.+++-+-||.+.+++-+.....+.
T Consensus 95 hP~kl~vY~v~~~~g~---~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~ 170 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGT---VEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF 170 (418)
T ss_pred cCCEEEEEEEEecCCC---cccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence 8899999999543311 01111112222222111 13345566655432 246788889999999998765443333
Q ss_pred Eec--CCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 173 VHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 173 ~~~--~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
+.. -.++++|+ +....+++++.+..+..|...
T Consensus 171 lp~~llPgPl~Y~-------~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 171 LPDFLLPGPLCYC-------PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCCCCCCcCeEEe-------ecCCEEEEecCceeEEEecHH
Confidence 332 12445555 456678888888888888765
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.24 E-value=21 Score=40.55 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=76.0
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC-------C----ce-E------EEEecCCceeEEEEeeccCCccce
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-------S----SI-I------LEVHSPERCLLYSMKLWGDNLEAL 194 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~-------~----~~-~------~~~~~~~~~~~~s~~~~~~~~~~~ 194 (839)
..|+-|.+.-.. +...|+.|.+||.|.+|.+++ . .. . ..+.......+|+++++.. ....
T Consensus 101 HtIN~i~v~~lg-~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLG-GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSR 178 (717)
T ss_pred ceeeEEEecccC-CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-Ccce
Confidence 346666554321 556888999999999997631 1 00 0 0011222345788887632 4567
Q ss_pred EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC---C--
Q 003208 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---S-- 269 (839)
Q Consensus 195 ~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~-- 269 (839)
+||+++....|.||-..... .......-..|...|-+|+|-++. .
T Consensus 179 lIAVSsNs~~VTVFaf~l~~------------------------------~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~ 228 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVD------------------------------ERFYHVPSHQHSHNIPNVSFLDDDLDPNGH 228 (717)
T ss_pred EEEEecCCceEEEEEEeccc------------------------------cccccccccccccCCCeeEeecCCCCCccc
Confidence 88888888999998776210 000010011266789999997643 2
Q ss_pred -EEEEEeCCCcEEEEEcc
Q 003208 270 -KLVSVSDDRSARIWEVR 286 (839)
Q Consensus 270 -~l~s~s~d~~i~iwd~~ 286 (839)
++++++-.|.+.+|++.
T Consensus 229 v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 229 VKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEeccCcEEEEEEE
Confidence 78889999999999883
No 410
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.18 E-value=34 Score=34.19 Aligned_cols=249 Identities=14% Similarity=0.125 Sum_probs=123.4
Q ss_pred EEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC-----CCcceEEEEEee
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFLK 142 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~I~~~~~~~ 142 (839)
-.+|+++ |.+. .+++..+.+...+||......++.. ..++-.+.. -....+.+.|+.
T Consensus 25 ~WGia~~-------p~~~---~WVadngT~~~TlYdg~~~~~~g~~--------~~L~vtiP~~~~~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 25 AWGLSYR-------PGGP---FWVANTGTGTATLYVGNPDTQPLVQ--------DPLVVVIPAPPPLAAEGTPTGQVFNG 86 (336)
T ss_pred cceeEec-------CCCC---EEEecCCcceEEeecCCcccccCCc--------cceEEEecCCCCCCCCCCccEEEEeC
Confidence 4678888 6652 5666667899999998733211111 223333332 224577888874
Q ss_pred cc-----CC----CcEEEEEeCCCcEEEEecCCCce-----EEEEecCCceeEEE-EeeccCCccceEEEEeecCCeEEE
Q 003208 143 VC-----NG----NRSLAIGCSDNSIRVWDISNSSI-----ILEVHSPERCLLYS-MKLWGDNLEALRIASGTIYNEIIV 207 (839)
Q Consensus 143 ~~-----~~----~~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~s-~~~~~~~~~~~~l~sg~~dg~i~v 207 (839)
-. .. ...++.+++||+|.-|...-... ...+.......+|. +++........+.++--..++|.+
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEE
Confidence 10 00 12356678999999998632222 11222122223332 333222222333344445788888
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
+|-...+..- . ..+..... .. ....--+..+. -.=.|+-..-.++.+.=+.+-.-|.|-++|...
T Consensus 167 Fd~~f~~~~~-~-----g~F~DP~i-----Pa---gyAPFnIqnig-~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G 231 (336)
T TIGR03118 167 FKGSFRPPPL-P-----GSFIDPAL-----PA---GYAPFNVQNLG-GTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG 231 (336)
T ss_pred ecCccccccC-C-----CCccCCCC-----CC---CCCCcceEEEC-CeEEEEEEecCCcccccccCCCcceEEEEcCCC
Confidence 8865322110 0 00000000 00 00000011111 001122222233333334444557888888876
Q ss_pred CccCCCCCceeeeceEeeccccceEEeEEC--------CCEEEEEeCCCeEEEEcC-CCceEEEeecccCC-----ceEE
Q 003208 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWR 353 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~-----~i~~ 353 (839)
.-. +. +...+.-...|.|+.. +.+|+----||+|..+|. +++.+..+....+. .+|.
T Consensus 232 ~l~------~r---~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWg 302 (336)
T TIGR03118 232 QLL------RR---VASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWS 302 (336)
T ss_pred cEE------EE---eccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEE
Confidence 432 11 1223333445666543 567777777999999998 78888777765542 4788
Q ss_pred EEEcc
Q 003208 354 CLYDS 358 (839)
Q Consensus 354 ~~~~~ 358 (839)
|+|..
T Consensus 303 L~fGn 307 (336)
T TIGR03118 303 LTFGN 307 (336)
T ss_pred eeeCC
Confidence 88854
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.99 E-value=2.7 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=26.1
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
+.|.++.|+|.+.-.++|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998211126888888889999999985
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.86 E-value=2.4 Score=28.13 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.3
Q ss_pred eeeeEEEEecCCCCCCCc--ceEEEee-CCeeEEEECCC
Q 003208 18 GEISALCFVHLPSHLSSL--PFLLAGS-GSQVLLYDLEA 53 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~--~~l~~g~-~~~v~iwd~~~ 53 (839)
|+|.+++|+ |+ ++ .+|+-.. -+.|.|+|+.+
T Consensus 1 GAvR~~kFs--P~---~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFS--PE---PGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeC--CC---CCcccEEEEEccCCeEEEEEccc
Confidence 568999999 87 23 4666666 69999999985
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.47 E-value=30 Score=32.77 Aligned_cols=171 Identities=9% Similarity=0.083 Sum_probs=78.0
Q ss_pred cEEEEEeCCCcEEEEecCC--CceEEEEecCCceeEEEEeeccCCccceEEEEeecC------CeEEEE-EeeccccccC
Q 003208 148 RSLAIGCSDNSIRVWDISN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVW-KVDWEHVAPL 218 (839)
Q Consensus 148 ~~las~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d------g~i~vw-~~~~~~~~~~ 218 (839)
+.|..+...+.|.+|++.+ .+.+.++..- +.+..+.+ +..|++|+|--.+ ..+|+| ||+..+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y---~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVY---SEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEe---ccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 4444445578899999983 3344444322 23445554 4678999984222 256665 5542211110
Q ss_pred CCC-CCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCce
Q 003208 219 LNS-PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 297 (839)
+.. ...+.+. ..+..+... ..-.+-.+. -..++.+++..|-...|+.|+. +.+.+|.+...... .....
T Consensus 104 ~v~vRiaG~~v-~~~~~~~~~------~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~-~~~~~ 173 (215)
T PF14761_consen 104 PVRVRIAGHRV-TPSFNESSK------DQLEIIELP-LSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQ-SEKFS 173 (215)
T ss_pred cEEEEEccccc-ccCCCCccc------cceEEEEec-CCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEe-ccccc
Confidence 000 0000000 000000000 011122222 2457788888885555666655 57889988654331 00011
Q ss_pred eeec-eEeecc-c-cceEEeEECCCEEEEEeCCCeEEEEc
Q 003208 298 EVGS-SVLYGH-N-ARVWDCCLTDSFIITAGEDCTCRVWG 334 (839)
Q Consensus 298 ~~~~-~~~~~h-~-~~v~~~~~~~~~l~s~~~dg~i~vw~ 334 (839)
.+.- ..+..| . -.+..+++.+++++..+.. .+++..
T Consensus 174 ~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlk 212 (215)
T PF14761_consen 174 FLDFERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLK 212 (215)
T ss_pred EEechhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEE
Confidence 1100 011112 1 1245666777787777643 455543
No 414
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.46 E-value=20 Score=39.79 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcCC
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~ 336 (839)
..++++.-+|.+..++++..||+|++|++...... .+.....+-..+.|.+.-++++..|..+.-|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-----------ki~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-----------KICEEAKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchh-----------hhhhhcCCccceeeeccceEEEeccchhheeecc
Confidence 45677888899999999999999999998765441 2222333445566776668888888888888877
Q ss_pred CceEEEeeccc--CCceEEEEEccCCC
Q 003208 337 GKQLKMIKEHI--GRGIWRCLYDSLSS 361 (839)
Q Consensus 337 ~~~~~~~~~h~--~~~i~~~~~~~~~~ 361 (839)
|.....+.... .+...++...|..+
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaq 110 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQ 110 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhh
Confidence 65555444322 22345566666543
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.28 E-value=28 Score=37.13 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCEEEEEeCCCeEEEEcCCCceEE-EeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 318 DSFIITAGEDCTCRVWGSDGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~~~~~~~-~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..+++.++..|.|++||.-|...+ .+.+... .|..+..+.+|+++++.+.. .+.+-|++.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeecc-eEEEEeccc
Confidence 589999999999999998444333 3444444 69999999999988777754 777888743
No 416
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.05 E-value=27 Score=37.70 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=65.9
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCcccccee
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 123 (839)
..+.++++++++....+. +.+ .-..-+|+ |||++ ..++...++...||-++... +
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g-~~~~P~fs-------pDG~~--l~f~~~rdg~~~iy~~dl~~--------------~ 272 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNG-NNGAPAFS-------PDGSK--LAFSSSRDGSPDIYLMDLDG--------------K 272 (425)
T ss_pred ceEEEEeccCCccceeec-cCC-ccCCccCC-------CCCCE--EEEEECCCCCccEEEEcCCC--------------C
Confidence 579999999887655444 222 23445677 99841 23333446665555544322 1
Q ss_pred eeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
....+..-.+.-..=.|+| +|+.++-.+. .| .|.+.|.+.....+......... .-..+|++.+|+..+
T Consensus 273 ~~~~Lt~~~gi~~~Ps~sp---dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-----~p~~SpdG~~i~~~~ 344 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSP---DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-----NPVWSPDGDKIVFES 344 (425)
T ss_pred cceecccCCccccCccCCC---CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-----CccCCCCCCEEEEEe
Confidence 1112222222222445778 9998876553 33 46666776655432222111111 111368998888766
Q ss_pred cC-Ce
Q 003208 201 IY-NE 204 (839)
Q Consensus 201 ~d-g~ 204 (839)
.. |.
T Consensus 345 ~~~g~ 349 (425)
T COG0823 345 SSGGQ 349 (425)
T ss_pred ccCCc
Confidence 43 44
No 417
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.02 E-value=38 Score=33.54 Aligned_cols=146 Identities=10% Similarity=0.056 Sum_probs=88.0
Q ss_pred cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 192 ~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
.++++..+..+.-+++.|+.+.+ +...+..+. -.+--.++.. .|++.
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~------------------------------sP~~~~~ln-t~gyaygv~v--sGn~a 141 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPD------------------------------SPTLIGFLN-TDGYAYGVYV--SGNYA 141 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCC------------------------------Ccceecccc-CCceEEEEEe--cCCEE
Confidence 35677777888899999987211 222222222 1133344444 57888
Q ss_pred EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcCCCceEEEeecc--cCC
Q 003208 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEH--IGR 349 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~h--~~~ 349 (839)
..+..|.-+.+.|+.+... .+..+ ........-+.++.++++...+..|+-+.+-|++...-.++.+| .+.
T Consensus 142 YVadlddgfLivdvsdpss-----P~lag--rya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~ 214 (370)
T COG5276 142 YVADLDDGFLIVDVSDPSS-----PQLAG--RYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP 214 (370)
T ss_pred EEeeccCcEEEEECCCCCC-----ceeee--eeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC
Confidence 8888666688899988655 22222 22333334478889999999999999999999943322233222 222
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+.++..+++-.+++..+ --+.+-|..+
T Consensus 215 g~~sv~vsdnr~y~vvy~--egvlivd~s~ 242 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYD--EGVLIVDVSG 242 (370)
T ss_pred ceEEEEecCCeeEEEEcc--cceEEEecCC
Confidence 477777777655544433 2355556543
No 418
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.22 E-value=57 Score=34.86 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=82.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~ 335 (839)
+....+..++++..++.+..-..++-||-....- +. ........+..+.+. +..++..+.+|.+..=+-
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~~----~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d 308 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------QP----HNRASARRIQNMGWRADGGLWLLTRGGGLYVSKG 308 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcce------EE----ecCCCccceeeeeEcCCCCEEEEeCCceEEEecC
Confidence 3456667778887666665543333454322110 00 122234457778776 445555667777655443
Q ss_pred CCc-----eEEEeecc-cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCc
Q 003208 336 DGK-----QLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (839)
Q Consensus 336 ~~~-----~~~~~~~h-~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (839)
.++ ........ ....+..+.+.+++.. +.+|.+|.+....-.++ .|....
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D~G~-------------------tW~~~~---- 364 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTDGGK-------------------SWKRDK---- 364 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCCCCc-------------------ceeEcc----
Confidence 443 22332222 2224888889877665 45566776666543322 111110
Q ss_pred cceeeccCCCcceEEEEEecCCeEEEEeccceEEEE
Q 003208 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (839)
Q Consensus 410 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~ 445 (839)
..+.-....+.+.|.++++.++...+|.|+++
T Consensus 365 ----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 ----GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ----ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 00011134778888888899999999988754
No 419
>PHA03098 kelch-like protein; Provisional
Probab=85.09 E-value=37 Score=38.34 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCcEEEEEeCCC------cEEEEecCCCce
Q 003208 146 GNRSLAIGCSDN------SIRVWDISNSSI 169 (839)
Q Consensus 146 ~~~~las~~~d~------~i~vwd~~~~~~ 169 (839)
++.+++.|+.++ .+..||..+.+-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence 566677776542 567788876554
No 420
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.75 E-value=16 Score=38.88 Aligned_cols=119 Identities=10% Similarity=0.112 Sum_probs=70.1
Q ss_pred cccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe-----eeeEEeee-cCceEEeEEecccccccCC
Q 003208 9 WRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----LIRPFQVF-HGIRLHGISCNFINCTEGS 82 (839)
Q Consensus 9 w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~-----~~~~~~~~-~~~~v~~i~~~~~~~~~~~ 82 (839)
|..........++++.|. ++ +.+++++.+|.+.. ....|+ ........ ....+.++.+. +
T Consensus 272 W~~~~~~~~~~l~~v~~~--~d----g~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~-------~ 337 (398)
T PLN00033 272 WQPHNRASARRIQNMGWR--AD----GGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYR-------S 337 (398)
T ss_pred eEEecCCCccceeeeeEc--CC----CCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEc-------C
Confidence 343333334568899998 88 88999988776543 334453 22222221 22347888888 6
Q ss_pred CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEE
Q 003208 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (839)
Q Consensus 83 ~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vw 162 (839)
++ ..++++..|.+....-. +. .++.......-....+.+.|.+ +++.+++ +.+|.|.-|
T Consensus 338 d~----~~~a~G~~G~v~~s~D~-G~------------tW~~~~~~~~~~~~ly~v~f~~---~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 338 KK----EAWAAGGSGILLRSTDG-GK------------SWKRDKGADNIAANLYSVKFFD---DKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CC----cEEEEECCCcEEEeCCC-Cc------------ceeEccccCCCCcceeEEEEcC---CCceEEE-eCCcEEEEe
Confidence 76 77888878876665422 11 1333332233445678899876 6665555 457776554
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.50 E-value=25 Score=40.75 Aligned_cols=94 Identities=11% Similarity=0.164 Sum_probs=59.2
Q ss_pred ceEEEEeeecCCCEEEEecCCccEEEEecccc-c----ccCCCccceeecCcce-eeecccCCCceeEEEEEeccCCceE
Q 003208 581 ARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD-L----LNDKSVALHVEVSPLN-YFKGAHGISTVSTLSVAKLRSNQTE 654 (839)
Q Consensus 581 ~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~-~----~~~~~~~~~~~~~~~~-~~~~~h~~~~Vt~i~~~~~~~~~~~ 654 (839)
-.|..+.++|+|++||..+..| |.|-.++.. . ...+.....-+..++. .+...+....|..+.|.|.+.++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3589999999999999988755 444445431 1 1111111111111111 2222233367999999988766677
Q ss_pred EEeecCcCcEEEEEEecCCce
Q 003208 655 IRSTGGDGCICYLEYDKDRES 675 (839)
Q Consensus 655 l~s~~~Dg~i~iw~~~~~~~~ 675 (839)
|+.=..|+++|+|++.....+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEEecCCEEEEEecCCCCCC
Confidence 888888999999999865544
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.22 E-value=9.4 Score=44.66 Aligned_cols=121 Identities=7% Similarity=-0.048 Sum_probs=72.5
Q ss_pred CeEEEEEcCCCCEEE--EEeCCCcEEEEEcccCccCCCCCceeeec-eEeeccccceEEeEEC---CCEEEEEeCCCeEE
Q 003208 258 SIFRIEWSSCGSKLV--SVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~--s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~ 331 (839)
.|..+...+|+...+ ..+.+-.|..||++.-.........+++. ...........++.|. +...+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 444555566655433 33444578899987644311001111110 0111222334566777 35677788899999
Q ss_pred EEcCC--CceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc
Q 003208 332 VWGSD--GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 332 vw~~~--~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~ 380 (839)
+..+. ...+..+.... ..++++|+|.|+.++.|-..|++.-|.....
T Consensus 182 V~~~~~~~~~v~s~p~t~--~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTN--SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhcccCccc--ceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 98872 22333333222 4889999999999999999999998877543
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.98 E-value=16 Score=39.03 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=40.6
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
.....+......+.+++.+| ++.+.|+...=|.|.++|+.++..++..++.-
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP---~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSP---SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred ceEEeeccCCceEEEEEECC---CCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 34455556667799999999 88888887777999999999988877666443
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.86 E-value=59 Score=33.16 Aligned_cols=284 Identities=12% Similarity=0.033 Sum_probs=121.5
Q ss_pred ccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCC-eeeeE--Eeeec--CceEEeEEecccccccCC
Q 003208 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRP--FQVFH--GIRLHGISCNFINCTEGS 82 (839)
Q Consensus 8 ~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~-~~~~~--~~~~~--~~~v~~i~~~~~~~~~~~ 82 (839)
-|......-..++.+|+|. .+ ..-.++|..+. |+...+| +.=.. ..... ......|.|. .
T Consensus 7 ~W~~v~l~t~~~l~dV~F~--d~----~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-------~ 71 (302)
T PF14870_consen 7 SWQQVSLPTDKPLLDVAFV--DP----NHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-------G 71 (302)
T ss_dssp -EEEEE-S-SS-EEEEEES--SS----S-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEE-------T
T ss_pred CcEEeecCCCCceEEEEEe--cC----CEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEec-------C
Confidence 3555544445688999998 54 56677777664 4444443 21111 11111 2235567766 3
Q ss_pred CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEE
Q 003208 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (839)
Q Consensus 83 ~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vw 162 (839)
+ ..++++..+. |+...... . .++.+..-..-.+....+.... ++..++. +..|. ||
T Consensus 72 ~-----~g~ivG~~g~--ll~T~DgG---~--------tW~~v~l~~~lpgs~~~i~~l~---~~~~~l~-~~~G~--iy 127 (302)
T PF14870_consen 72 N-----EGWIVGEPGL--LLHTTDGG---K--------TWERVPLSSKLPGSPFGITALG---DGSAELA-GDRGA--IY 127 (302)
T ss_dssp T-----EEEEEEETTE--EEEESSTT---S--------S-EE----TT-SS-EEEEEEEE---TTEEEEE-ETT----EE
T ss_pred C-----ceEEEcCCce--EEEecCCC---C--------CcEEeecCCCCCCCeeEEEEcC---CCcEEEE-cCCCc--EE
Confidence 3 3344444442 33332211 0 1343332111222333444444 4443333 34443 34
Q ss_pred ecC-CCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 163 DIS-NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 163 d~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
... .++.-..+.......+..+.. .+++.+++++..-....-|+.-..
T Consensus 128 ~T~DgG~tW~~~~~~~~gs~~~~~r---~~dG~~vavs~~G~~~~s~~~G~~---------------------------- 176 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSETSGSINDITR---SSDGRYVAVSSRGNFYSSWDPGQT---------------------------- 176 (302)
T ss_dssp EESSTTSSEEEEE-S----EEEEEE----TTS-EEEEETTSSEEEEE-TT-S----------------------------
T ss_pred EeCCCCCCeeEcccCCcceeEeEEE---CCCCcEEEEECcccEEEEecCCCc----------------------------
Confidence 333 344444433333333444433 588888888866555567774300
Q ss_pred ccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec-eEeeccccceEEeEEC-CC
Q 003208 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT-DS 319 (839)
Q Consensus 242 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~-~~ 319 (839)
.-.+. -+.-...|..+.|.|++...+.+ ..|.|++=+...... ....+ .....-.-.+..++|. ++
T Consensus 177 ---~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~------~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 177 ---TWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE------TWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp ---S-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE------EE---B-TTSS--S-EEEEEESSSS
T ss_pred ---cceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc------ccccccCCcccCceeeEEEEecCCC
Confidence 11111 12245789999999997765544 888888877221110 00000 0111122347888998 56
Q ss_pred EEEEEeCCCeEEEEcCCCceEEEeec---ccCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 003208 320 FIITAGEDCTCRVWGSDGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~~~~~~~~~~~---h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw 375 (839)
.+..++..|++.+=.-.|+.=.+.+. -.. .+..+.|.++. .-...+.+|.|.-|
T Consensus 245 ~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~-n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPS-NLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEESTT-EEEESSTTSS-EE-GGGTTSSS----EEEEEETT-EEEEE-STTEEEEE
T ss_pred CEEEEeCCccEEEeCCCCccceECccccCCCC-ceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 66666667766654434443333322 122 47788886554 34455678877655
No 425
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.59 E-value=1.1e+02 Score=36.16 Aligned_cols=141 Identities=11% Similarity=0.101 Sum_probs=70.5
Q ss_pred ccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEee
Q 003208 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~ 517 (839)
.+|.++.+++..... +.+.+.+.....++.++. +. .+++.+| ....+++|++-..++..+.....
T Consensus 910 ~~g~~ytyk~~~~g~-~lellh~T~~~~~v~Ai~--~f--------~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~--- 974 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGD-KLELLHKTEIPGPVGAIC--PF--------QGRVLAG-VGRFLRLYDLGKKKLLRKCELKF--- 974 (1205)
T ss_pred CCCceEEEEEEecCc-eeeeeeccCCCccceEEe--cc--------CCEEEEe-cccEEEEeeCChHHHHhhhhhcc---
Confidence 345555555554433 223333333344444442 22 2344443 34689999997766554433322
Q ss_pred ccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEE
Q 003208 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597 (839)
Q Consensus 518 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~ 597 (839)
....+.. ....+..+++|..-..+.++-...... . +..-....-..-|+++.+- |...+|.
T Consensus 975 --~p~~Is~----iqt~~~RI~VgD~qeSV~~~~y~~~~n--~----------l~~fadD~~pR~Vt~~~~l-D~~tvag 1035 (1205)
T KOG1898|consen 975 --IPNRISS----IQTYGARIVVGDIQESVHFVRYRREDN--Q----------LIVFADDPVPRHVTALELL-DYDTVAG 1035 (1205)
T ss_pred --CceEEEE----EeecceEEEEeeccceEEEEEEecCCC--e----------EEEEeCCCccceeeEEEEe-cCCceee
Confidence 0111212 223445666666555555544432211 0 1111111223335666554 4567889
Q ss_pred ecCCccEEEEecccc
Q 003208 598 GDLRGNLVLFPLLRD 612 (839)
Q Consensus 598 gs~dg~i~iw~~~~~ 612 (839)
|++-|++.+-.++..
T Consensus 1036 aDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1036 ADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ccccCcEEEEECCCc
Confidence 999999999988764
No 426
>PHA03098 kelch-like protein; Provisional
Probab=82.40 E-value=52 Score=37.13 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=15.6
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCCc
Q 003208 146 GNRSLAIGCSD-----NSIRVWDISNSS 168 (839)
Q Consensus 146 ~~~~las~~~d-----~~i~vwd~~~~~ 168 (839)
++.+.+.||.+ ..+..||..+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 66777778765 347778876654
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.06 E-value=63 Score=32.95 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=76.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV 332 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~v 332 (839)
.-.+.+..+.-+++|+++++++.-....-||.-...- + .....-..+|..|.|. +..+......|.|+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w------~----~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW------Q----PHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------E----EEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc------e----EEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 4457888999999999888887766666787654222 1 1233346789999998 344444558888888
Q ss_pred EcC--CCceEEE--eec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCC
Q 003208 333 WGS--DGKQLKM--IKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (839)
Q Consensus 333 w~~--~~~~~~~--~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (839)
=+. ..+.-.. ... ..+..+..+++.+++...++|+. |.+.. +.++ .+.|...
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~Dg------------------GktW~~~--- 268 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDG------------------GKTWQKD--- 268 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESST------------------TSS-EE----
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCC------------------CccceEC---
Confidence 762 2111111 111 12225889999988777776554 44433 2211 0111110
Q ss_pred CccceeeccCCCcceEEEEEecCCeEEEEeccceEEEE
Q 003208 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (839)
Q Consensus 408 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~ 445 (839)
.........+..+.|.++++-++...+|.+++|
T Consensus 269 -----~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 269 -----RVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -----GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred -----ccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 000011124778888888888888999988765
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.00 E-value=0.48 Score=49.34 Aligned_cols=149 Identities=20% Similarity=0.293 Sum_probs=94.1
Q ss_pred EEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceE-EEEeecCCeEEEEEeecccc
Q 003208 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR-IASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 137 ~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-l~sg~~dg~i~vw~~~~~~~ 215 (839)
...|-| .+.-++.++.+..+..||-. ++.......+..++ .+++ +.++.. ++.+-..+.+.+|++....
T Consensus 39 ~~~w~~---e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~al--dm~w---DkegdvlavlAek~~piylwd~n~ey- 108 (615)
T KOG2247|consen 39 IHRWRP---EGHNLAVACANTIVIYYDKA-GQVILELNPTGKAL--DMAW---DKEGDVLAVLAEKTGPIYLWDVNSEY- 108 (615)
T ss_pred eeeEec---CCCceehhhhhhHHHhhhhh-cceecccCCchhHh--hhhh---ccccchhhhhhhcCCCeeechhhhhh-
Confidence 345666 55557777788888888864 44443333333322 2222 224443 3445677899999987111
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 295 (839)
.+.+..--.|..+. +.|++....++.+-..+++++++......
T Consensus 109 ------------------------------tqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~----- 151 (615)
T KOG2247|consen 109 ------------------------------TQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR----- 151 (615)
T ss_pred ------------------------------HHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhh-----
Confidence 01110001122232 77888888888888999999999887655
Q ss_pred ceeeeceEeec-cccceEEeEEC-CCEEEEEeCCCeEEEEcCCCc
Q 003208 296 IEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDGK 338 (839)
Q Consensus 296 ~~~~~~~~~~~-h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~ 338 (839)
....| |..++.++++. .++.+.++.|..+.+-...++
T Consensus 152 ------iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qege 190 (615)
T KOG2247|consen 152 ------IIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGE 190 (615)
T ss_pred ------hhhhcccccceeEEEecccceeeecCcHHHHHHhhhccc
Confidence 24445 99999999998 688888988877666554333
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.95 E-value=33 Score=29.67 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=66.1
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC----
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---- 266 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---- 266 (839)
.....|++++.-|+|.|.++......... ....+..+. -...|++|+--+
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------~~~~i~~LN-in~~italaaG~l~~~ 61 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------QDSDISFLN-INQEITALAAGRLKPD 61 (136)
T ss_pred CCceeEEEEecCCEEEEECCCcccccccc-------------------------ccCceeEEE-CCCceEEEEEEecCCC
Confidence 34457888888899999997722111100 112233332 346677775433
Q ss_pred -CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-----CCEEEEEeCCCeEEEEcCCCceE
Q 003208 267 -CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSDGKQL 340 (839)
Q Consensus 267 -~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~~~~~~ 340 (839)
+...|+.|+. .++..||+....- ...+.-...|.++.+. +.-++..+.++.|.-||.+|..+
T Consensus 62 ~~~D~LliGt~-t~llaYDV~~N~d-----------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 62 DGRDCLLIGTQ-TSLLAYDVENNSD-----------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred CCcCEEEEecc-ceEEEEEcccCch-----------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 2345666665 5799999988754 1333445667777663 34445555577888888766543
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=81.94 E-value=89 Score=34.63 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=15.6
Q ss_pred CCcEEEEEeCC---CcEEEEecCCCc
Q 003208 146 GNRSLAIGCSD---NSIRVWDISNSS 168 (839)
Q Consensus 146 ~~~~las~~~d---~~i~vwd~~~~~ 168 (839)
++.+.+.||.+ ..+..||..+.+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCE
Confidence 67777777754 347788886653
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.59 E-value=31 Score=36.55 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=52.3
Q ss_pred CCeeEEEECCCCeeeeEEeeecC-ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHG-IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
+..|++||+.+.+.++++..... .-+..|.|.-. |+.. ..++.+.-..+|..|--..... +..+....
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~-----P~~~--~gFvg~aLss~i~~~~k~~~g~----W~a~kVi~ 289 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD-----PDAN--YGFVGCALSSSIWRFYKDDDGE----WAAEKVID 289 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SS-----TT----EEEEEEE--EEEEEEEE-ETTE----EEEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCC-----CCcc--ceEEEEeccceEEEEEEcCCCC----eeeeEEEE
Confidence 46899999999999999997543 34567777622 4432 1334444455555544322110 00000000
Q ss_pred e-----------eeeEeccCCCcceEEEEEeeccCCCcEEEEE-eCCCcEEEEecCCC
Q 003208 122 L-----------SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNS 167 (839)
Q Consensus 122 ~-----------~~~~~~~~h~~~I~~~~~~~~~~~~~~las~-~~d~~i~vwd~~~~ 167 (839)
. +.++.+..-..-|++|.++. |.++|... =.+|.|+.||+.+.
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl---DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISL---DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-T---TS-EEEEEETTTTEEEEEE-SST
T ss_pred CCCcccCcccccccccccccCCCceEeEEEcc---CCCEEEEEcccCCcEEEEecCCC
Confidence 0 00011111245689999998 88877654 45999999999764
No 432
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.86 E-value=88 Score=33.86 Aligned_cols=109 Identities=9% Similarity=0.033 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC----
Q 003208 259 IFRIEWSSCGSKLVSV-SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---- 327 (839)
Q Consensus 259 V~~l~~~~~~~~l~s~-s~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d---- 327 (839)
+....++|++++++-+ +..| ++++.|+.+++. +.. .+.. .....+.|. +..|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-----l~d----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-----LPD----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-----EEE----EEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-----cCC----cccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 4467889999988754 3434 599999998754 110 1111 112237887 3454444322
Q ss_pred -------CeEEEEcC-CC--ceEEEeecccCCc-eEEEEEccCCCEEEEEeCC----CcEEEEecC
Q 003208 328 -------CTCRVWGS-DG--KQLKMIKEHIGRG-IWRCLYDSLSSLLVTAGFD----SAIKVHQFQ 378 (839)
Q Consensus 328 -------g~i~vw~~-~~--~~~~~~~~h~~~~-i~~~~~~~~~~~l~t~~~d----g~i~iw~~~ 378 (839)
..|+.|.+ +. +....+....... ...+..++++++|+..... ..+.+.++.
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 23777777 32 2123444444322 4577889999876654432 235555553
No 433
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.83 E-value=1.3e+02 Score=35.73 Aligned_cols=192 Identities=15% Similarity=0.128 Sum_probs=104.9
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC---CcceEEEEE
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL---SHWVFDVCF 140 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~I~~~~~ 140 (839)
.+.+|..|.|........+.. .+|++=....+.|+.............+...+...++..+..+ ..+.-+++|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~----~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKS----RWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCeeEEEecccccccCCcC----cEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 455788888872211111111 5788888889999984433210000011122233444444422 236778999
Q ss_pred eeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCC
Q 003208 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~ 220 (839)
+|+ +...||+....|...||++....... ...+-+.....|.| +.|..
T Consensus 154 nP~--~~~q~AiVD~~G~Wsvw~i~~~~~~~--------------------~~~~~~~~~~~gsi-~~d~~--------- 201 (765)
T PF10214_consen 154 NPW--DQRQFAIVDEKGNWSVWDIKGRPKRK--------------------SSNLRLSRNISGSI-IFDPE--------- 201 (765)
T ss_pred ccC--ccceEEEEeccCcEEEEEeccccccC--------------------CcceeeccCCCccc-cCCCc---------
Confidence 994 45588999999999999992211110 01111222222333 23322
Q ss_pred CCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeee
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
.. +.-..|.|.++.+.|+.++. ..+.++|+.+... ...+
T Consensus 202 ---------------------------e~-------s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~-----~~~l- 240 (765)
T PF10214_consen 202 ---------------------------EL-------SNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ-----TEYL- 240 (765)
T ss_pred ---------------------------cc-------CcceeeEecCCCCEEEEEcC-CceEEEECCCCCc-----cchh-
Confidence 11 44567888888888888877 5689999987654 1111
Q ss_pred ceEeeccccceEEeEECC---CEEEEEeCCCeEEEEcC
Q 003208 301 SSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS 335 (839)
Q Consensus 301 ~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vw~~ 335 (839)
.......+|..+.-++ .+++.-.. ..|...++
T Consensus 241 --~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~ 275 (765)
T PF10214_consen 241 --VTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDV 275 (765)
T ss_pred --ccCCChhheeeEEecCCccceEEEEec-CeEEEEEc
Confidence 2334456777777763 24443332 45655565
No 434
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.61 E-value=8.2 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=25.4
Q ss_pred cceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEe
Q 003208 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 73 (839)
++.|+++. ++.|.++|..+++.+.++.... ...+|+|
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~--~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGG--YPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCC--CCceEEe
Confidence 44444444 6899999999999888888632 2445544
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.42 E-value=89 Score=33.06 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCC-EEEEEeCCCeEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRV 332 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~~~dg~i~v 332 (839)
..+++|.++.|++|.+.|+.--.|.+|-+++....+.. .... ......+..|....|..+ -++-.. +.-+-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-----l~~~-~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~ 136 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-----LEYT-QECKTKNANILGFCWTSSTEIAFIT-DQGIEF 136 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh-----hHHH-HHhccCcceeEEEEEecCeeEEEEe-cCCeEE
Confidence 35679999999999999999999999999998554331 1000 122333445777777733 333333 333556
Q ss_pred EcC--CCceEEEeecccCCceEEEEEccCCCEEEEEe--CCCcEEEEec
Q 003208 333 WGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQF 377 (839)
Q Consensus 333 w~~--~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~--~dg~i~iw~~ 377 (839)
|-. ..+.++..+.|.. .|.-..|+++.+.++-++ ..+++.=+.+
T Consensus 137 y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 137 YQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred EEEchhhhhhhhhhhccc-CccEEEEccccceEeeeccccccccccEEE
Confidence 654 3445555666666 688888888876433332 3444444444
No 436
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.39 E-value=20 Score=43.00 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=82.0
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEE--------cCCCCE
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW--------SSCGSK 270 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~ 270 (839)
-+.|+.+.+|+.. .....+.+.+-...|..|.. .|.=++
T Consensus 95 iTiDn~L~lWny~---------------------------------~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqh 141 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYE---------------------------------SDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQH 141 (1311)
T ss_pred EEeCCeEEEEEcC---------------------------------CCCccccccchhhhheeeeeecCCCCcchhhhhe
Confidence 3578999999998 33344445555555655543 222234
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC--C---C---c-e-
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS--D---G---K-Q- 339 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~--~---~---~-~- 339 (839)
++....--.|.++-+...+.......- ...+.+......|.|+... +..++-+|.|| .+|.+ . + + +
T Consensus 142 lLvvaT~~ei~ilgV~~~~~~~~~~~f-~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~ 218 (1311)
T KOG1900|consen 142 LLVVATPVEIVILGVSFDEFTGELSIF-NTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCR 218 (1311)
T ss_pred eEEecccceEEEEEEEeccccCccccc-ccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccc
Confidence 444444445666655433221000000 0001233335678888865 56666677777 45543 1 1 1 0
Q ss_pred ---------------EEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 340 ---------------LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 340 ---------------~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+-.+.+....+|..++++..-+.+.+-+..|+|.+|++..
T Consensus 219 Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 219 KICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1112212233799999988888999999999999999954
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=78.92 E-value=95 Score=34.41 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCC-----cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC--CeEEEEEee
Q 003208 146 GNRSLAIGCSDN-----SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY--NEIIVWKVD 211 (839)
Q Consensus 146 ~~~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d--g~i~vw~~~ 211 (839)
++.++++||.++ .+..||..+..-...-..+......++.. .++.+.+.|+.+ ..+..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~----~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP----ANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE----ECCEEEEECCcCCCCceEEEECC
Confidence 556667777543 46678877654322111111111112211 356666666653 346666654
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.69 E-value=7.6 Score=37.48 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=49.4
Q ss_pred ecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceee-eeec---cccccCceEEEEeeecCCCEEEEecCCccEEE
Q 003208 531 KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF-LVAE---FSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (839)
Q Consensus 531 ~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~---~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~i 606 (839)
+...+.+|++-..+|.+++||+.+.+..... ..+. +... ........|+.+.++.+|.-|++=+ +|..+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-----~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPP-----VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCC-----ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 4457889999999999999999986531111 0000 0000 0003467799999998888776654 688999
Q ss_pred Eecc
Q 003208 607 FPLL 610 (839)
Q Consensus 607 w~~~ 610 (839)
|+.+
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 9876
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=77.88 E-value=94 Score=32.45 Aligned_cols=114 Identities=9% Similarity=-0.045 Sum_probs=60.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw 333 (839)
-...++++.+.++++.++.+ ..|.+++=..+.+.. .+... .....-...+..+.+. ++.++.++.+|.+..=
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-----W~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S 285 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-----WSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS 285 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-----ccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEEEe
Confidence 34678899999988766554 557665322333222 11000 0000112346777777 4456667778866542
Q ss_pred cCCCceEEEeec---ccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 334 GSDGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 334 ~~~~~~~~~~~~---h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.-.|+.-..... -.. ....+.+..+++.+ ..|..|.|..++-
T Consensus 286 ~d~G~tW~~~~~~~~~~~-~~~~~~~~~~~~~~-~~G~~G~il~~~~ 330 (334)
T PRK13684 286 KDGGKTWEKDPVGEEVPS-NFYKIVFLDPEKGF-VLGQRGVLLRYVG 330 (334)
T ss_pred CCCCCCCeECCcCCCCCc-ceEEEEEeCCCceE-EECCCceEEEecC
Confidence 223333222221 112 46777777665554 4566788877653
No 440
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.85 E-value=84 Score=31.36 Aligned_cols=166 Identities=11% Similarity=0.159 Sum_probs=93.3
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~- 95 (839)
..|.++.|+ |+ .+.|++-. .+.-.|+=..+|++++++...--...-+|.+. .+| .++.+.
T Consensus 86 ~nvS~LTyn--p~----~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-------g~n-----~fvi~dE 147 (316)
T COG3204 86 ANVSSLTYN--PD----TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-------GGN-----QFVIVDE 147 (316)
T ss_pred ccccceeeC--CC----cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-------cCC-----EEEEEeh
Confidence 348899999 99 55555544 56667777778999998874221125567777 443 334433
Q ss_pred -CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE--
Q 003208 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-- 172 (839)
Q Consensus 96 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~-- 172 (839)
++.+.++.++.+..-... ..... .+.....-+...-.++|.| ....|..+-+-+-+.|+.+........
T Consensus 148 R~~~l~~~~vd~~t~~~~~----~~~~i-~L~~~~k~N~GfEGlA~d~---~~~~l~~aKEr~P~~I~~~~~~~~~l~~~ 219 (316)
T COG3204 148 RDRALYLFTVDADTTVISA----KVQKI-PLGTTNKKNKGFEGLAWDP---VDHRLFVAKERNPIGIFEVTQSPSSLSVH 219 (316)
T ss_pred hcceEEEEEEcCCccEEec----cceEE-eccccCCCCcCceeeecCC---CCceEEEEEccCCcEEEEEecCCcccccc
Confidence 677888877654210000 00001 1112222245677899999 888888887777777777653321111
Q ss_pred -EecCCce------eEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 173 -VHSPERC------LLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 173 -~~~~~~~------~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
...+... -+.++.+ ....+.+++-+..++.+.-.|..
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~--~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEF--NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cccCcccccceEeecccccee--cCCCCcEEEEecCCceEEEEecC
Confidence 1111110 0112222 23456677777777777777765
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.05 E-value=1.5e+02 Score=33.80 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCc
Q 003208 327 DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLP 382 (839)
Q Consensus 327 dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~ 382 (839)
--.|+|++..|+.+.++...++ .+-.+-|+.+. -|++...||++.+|++-+..+
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred ceeEEEEeccccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecchhhh
Confidence 4469999999999988877776 47899998764 567789999999999966433
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.91 E-value=20 Score=34.67 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=48.6
Q ss_pred ceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEE-------eec------ccCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 003208 310 RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKM-------IKE------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (839)
Q Consensus 310 ~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~-------~~~------h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw 375 (839)
++..+...+.+++....+|.+++||+ .++.+.. +.. .....|..+.++.+|.-+++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 55567777899999999999999999 4443221 111 1223588888998888777665 5788888
Q ss_pred ecCC
Q 003208 376 QFQA 379 (839)
Q Consensus 376 ~~~~ 379 (839)
+.+-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8743
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.08 E-value=33 Score=41.27 Aligned_cols=163 Identities=10% Similarity=0.159 Sum_probs=84.6
Q ss_pred CccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEE------eecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCcc
Q 003208 493 KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYW------CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (839)
Q Consensus 493 dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 566 (839)
|..+.+|+++++...+.+ .+..+.+..+-. .|-+.=++|+....--.|.++-+...+......+
T Consensus 98 Dn~L~lWny~~~~e~~~~-------d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~--- 167 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEY-------DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI--- 167 (1311)
T ss_pred CCeEEEEEcCCCCccccc-------cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc---
Confidence 679999999875432211 111111222111 1223335554444455677776654332111100
Q ss_pred ceeeeeecccc-ccCceEEEEeeecCCCEEEEecCCccEE--EEecccccccC-------CCccceeecCcceeeecccC
Q 003208 567 NNVFLVAEFSS-CFGARIMCLDASFEDEVLFCGDLRGNLV--LFPLLRDLLND-------KSVALHVEVSPLNYFKGAHG 636 (839)
Q Consensus 567 ~~~~~~~~~~~-~h~~~I~~l~~s~~~~~la~gs~dg~i~--iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~ 636 (839)
....|.. ..+..|+|+....+|+.+.+| +||.|+ +|...++=+.. ......-.++.+-.+++.+.
T Consensus 168 ----f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 ----FNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred ----cccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111222 236679999977888887555 666554 33333321100 00000001111112223333
Q ss_pred CCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCc
Q 003208 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 637 ~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
++|..|... .....|.+=+.-|.|.+|++..++.
T Consensus 243 -dpI~qi~ID---~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 243 -DPIRQITID---NSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred -CcceeeEec---cccceeeeeccCceEEEEEccCCCc
Confidence 789999988 6678899999999999999998654
No 444
>PRK13616 lipoprotein LpqB; Provisional
Probab=74.05 E-value=1.7e+02 Score=33.41 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=39.2
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEE---EecCCCce-E---EEEecCCceeEEEEeeccCCccceEEEEeecCCe
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRV---WDISNSSI-I---LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~v---wd~~~~~~-~---~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
.+.|..+.|+| +|..+|... ++.|.+ -....+.. + ..+.........++.+ ..++. |+.+..++.
T Consensus 447 ~g~Issl~wSp---DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W---~~~~~-L~V~~~~~~ 518 (591)
T PRK13616 447 PGPISELQLSR---DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW---RTGDS-LVVGRSDPE 518 (591)
T ss_pred CCCcCeEEECC---CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE---ecCCE-EEEEecCCC
Confidence 45799999999 999887665 467766 33334431 1 1111111111233443 23444 445555666
Q ss_pred EEEEEee
Q 003208 205 IIVWKVD 211 (839)
Q Consensus 205 i~vw~~~ 211 (839)
-.+|.+.
T Consensus 519 ~~v~~v~ 525 (591)
T PRK13616 519 HPVWYVN 525 (591)
T ss_pred CceEEEe
Confidence 6667665
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.95 E-value=15 Score=34.70 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=37.7
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~ 153 (839)
.++++.+++.|.+|++.... .++...+..- +.|..+.++. .|++|+|-
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~-------------~~~~~~F~Tv-~~V~~l~y~~---~GDYlvTl 77 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE-------------CPLLCTFSTV-GRVLQLVYSE---AGDYLVTL 77 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC-------------CceeEEEcch-hheeEEEecc---ccceEEEE
Confidence 67776788899999998433 4556666554 7899999999 99999985
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=73.68 E-value=64 Score=34.60 Aligned_cols=146 Identities=19% Similarity=0.167 Sum_probs=82.2
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc-----CCCcEEEEEeCCCcEEEEe
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWD 163 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-----~~~~~las~~~d~~i~vwd 163 (839)
.++..-++..=++|.++... ++.+.....|.+. -+.|.|.. .+.+.| .|-.+..|.-.|
T Consensus 480 sli~~dg~~~~kLykmDIEr-------------GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrID 543 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIER-------------GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRID 543 (776)
T ss_pred ceEEecCCCcccceeeeccc-------------ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEec
Confidence 34444444444555555433 6677777777664 46666611 011233 344455555555
Q ss_pred cC-CCceEEEEecCC--ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEee
Q 003208 164 IS-NSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (839)
Q Consensus 164 ~~-~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (839)
.+ .+..+...+... ...-++... .....+||+|+..|.|++||--
T Consensus 544 PR~~gNKi~v~esKdY~tKn~Fss~~---tTesGyIa~as~kGDirLyDRi----------------------------- 591 (776)
T COG5167 544 PRARGNKIKVVESKDYKTKNKFSSGM---TTESGYIAAASRKGDIRLYDRI----------------------------- 591 (776)
T ss_pred ccccCCceeeeeehhccccccccccc---cccCceEEEecCCCceeeehhh-----------------------------
Confidence 54 333333222111 111122111 1345699999999999999965
Q ss_pred cccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
..+....+.+-...|..|..+.+|+++++.+. ..+.+-|+.-
T Consensus 592 ----g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 592 ----GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred ----cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 22222345566788999999999998877776 4566666653
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.61 E-value=1.4e+02 Score=32.44 Aligned_cols=55 Identities=9% Similarity=0.133 Sum_probs=33.0
Q ss_pred ceEEEEEecCCeEEEEec-cceEEEEEecCCCCce---eEEEeeecCCCceEEeeecCC
Q 003208 421 YVRCLHLTSEDTLYIATN-HGYLYHTKLCDMDSVN---WNKILQVSEGMPIICMDLLSN 475 (839)
Q Consensus 421 ~v~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~ 475 (839)
....|+|.|++.++++-. .|.|++++-....... ...+.......-+..++++|+
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 478999999999999887 5999876432211100 011111112345677778776
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.44 E-value=1.1e+02 Score=32.36 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=53.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEE
Q 003208 257 GSIFRIEWSSCGSKLVSVS-----------DDR-SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIIT 323 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s-----------~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s 323 (839)
.....|+|.++|+.+++-. ..+ .|.+++-.++.-. ..... .+.........+++. +. ++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~----~d~~~--vfa~~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK----YDKSN--VFAEELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC----cceeE--EeecCCCCccceeEecCC-EEE
Confidence 4567899999998776653 223 5666654332110 11111 222222345677776 44 555
Q ss_pred EeCCCeEEEEcCCC------ceE---EEeecc---cCCceEEEEEccCCCEEEEEeC
Q 003208 324 AGEDCTCRVWGSDG------KQL---KMIKEH---IGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 324 ~~~dg~i~vw~~~~------~~~---~~~~~h---~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
+......++.+.++ +.. ..+... .......+++.|||.+.++-+.
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 55554444445532 211 122221 0113668899999987666553
No 449
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=71.38 E-value=1.4e+02 Score=31.42 Aligned_cols=32 Identities=22% Similarity=0.028 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 259 V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
..+..++|+.+.++=....+.|+-.|+.+.+.
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 44566778888776555557788888877543
No 450
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.03 E-value=10 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.5
Q ss_pred ceEEEEeeecCCCEEEEecCCccEEEEe
Q 003208 581 ARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (839)
Q Consensus 581 ~~I~~l~~s~~~~~la~gs~dg~i~iw~ 608 (839)
..|.+++.+ .++++++...+.++||.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 357888887 56999999999999984
No 451
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=69.36 E-value=2.7e+02 Score=33.84 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=69.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw 333 (839)
.-+++|..++ .-+|. |+++.. ..|.+|+++.... .++ ..+..-.-.+.++..-.++|+.|.--..|.+.
T Consensus 1095 E~KGtVsavc-eV~G~-l~~~~G-qKI~v~~l~r~~~-------lig-VaFiD~~~yv~s~~~vknlIl~gDV~ksisfl 1163 (1366)
T KOG1896|consen 1095 EQKGTVSAVC-EVRGH-LLSSQG-QKIIVRKLDRDSE-------LIG-VAFIDLPLYVHSMKVVKNLILAGDVMKSISFL 1163 (1366)
T ss_pred hcccceEEEE-EeccE-EEEccC-cEEEEEEeccCCc-------cee-eEEeccceeEEehhhhhhheehhhhhhceEEE
Confidence 3456776664 33554 444433 5799999944322 111 13333333344443336788888777777765
Q ss_pred cC--CCceEEEeec-ccCCceEEEEEccCCC--EEEEEeCCCcEEEEecCCcCccCcC
Q 003208 334 GS--DGKQLKMIKE-HIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQAFLPGSLE 386 (839)
Q Consensus 334 ~~--~~~~~~~~~~-h~~~~i~~~~~~~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~ 386 (839)
.. +...+..+.. ...-.+.++.|--+|. .++++..|+.|+++-.....+..+.
T Consensus 1164 ~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~ 1221 (1366)
T KOG1896|consen 1164 GFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLS 1221 (1366)
T ss_pred EEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccC
Confidence 55 3333333322 1222477788876664 6788899999999877544333333
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.00 E-value=1e+02 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=20.9
Q ss_pred CCcEEEEEeC--CCcEEEEecCCCceEEEEe
Q 003208 146 GNRSLAIGCS--DNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 146 ~~~~las~~~--d~~i~vwd~~~~~~~~~~~ 174 (839)
++.++.+.+. ...|++||+.+++.+....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~ 85 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK 85 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee
Confidence 5566666554 3469999999998876654
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.25 E-value=1.2e+02 Score=31.97 Aligned_cols=163 Identities=11% Similarity=0.072 Sum_probs=90.4
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc-ccceE-EeE-EC-CCEEEEEeCC
Q 003208 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVW-DCC-LT-DSFIITAGED 327 (839)
Q Consensus 252 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~-~~-~~~l~s~~~d 327 (839)
+..--..|..+-..|||+.+..-+. ..+.++++.+.... .+.+- ....+. ...|+ .+. .+ +..++.+..|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~----~rkl~-~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ----IRKLV-DDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccc----hhhhh-hcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3334456777888999998877666 67889998876542 11110 010110 01122 111 12 5678889999
Q ss_pred CeEEEEcC---CCc-eEEE---eecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcce
Q 003208 328 CTCRVWGS---DGK-QLKM---IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (839)
Q Consensus 328 g~i~vw~~---~~~-~~~~---~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (839)
|.|.-|=. ++. .+.. ++-... ++..+.-..+.+-+++-...|++.++.-.....--++
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa-~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-------------- 354 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPA-EVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-------------- 354 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcc-cceeeccccccceEEEEcCCCceeeeecccCcceehh--------------
Confidence 99998843 222 1221 211112 2333333333456777777888877765321110000
Q ss_pred EEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCC
Q 003208 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (839)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 451 (839)
.....+.-++++|.+..+..-+.|++..+.+.+..
T Consensus 355 ----------------~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 355 ----------------RAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred ----------------hhhcCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 00123567789998888888888988887776643
No 454
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=66.95 E-value=2.7e+02 Score=32.97 Aligned_cols=73 Identities=14% Similarity=-0.100 Sum_probs=46.8
Q ss_pred CCCeEEEEeCCCCcEEEeeecCCCCcccc----cCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEE
Q 003208 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCY----ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (839)
Q Consensus 533 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~ 605 (839)
.-+.+++..-.||.|.++|..+.+..... .......-..-+.|.-.....+..++|||++..++.-+.+|.+.
T Consensus 269 ~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 269 ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 35668888999999999998876542222 11111111111222222233566789999999999999999976
No 455
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=66.74 E-value=2.8e+02 Score=33.05 Aligned_cols=169 Identities=11% Similarity=0.047 Sum_probs=85.2
Q ss_pred EecCCeEEEEeccceEEEEEecCCCCceeEE-------EeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEE
Q 003208 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNK-------ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (839)
Q Consensus 427 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~ 499 (839)
....+.+++.|+.|.++..+........|.. +.....+..+..+-.... ..+...++..+.+|.++-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~-----~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKE-----FDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEecc-----CCCCCEEEEEeCCCEEEEE
Confidence 3445689999999999988765544332210 112222222322221111 1234678888899999988
Q ss_pred EEcCCCCCCc-ceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccc
Q 003208 500 RVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSC 578 (839)
Q Consensus 500 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (839)
+++.-..... .....++ .....+..+..+. ....++..+..|.+..+.+..-...... ...... +...
T Consensus 618 ~l~~~~~~~r~G~~aikl--ke~D~lv~v~~~~--~~d~lll~Ts~Gr~~r~~v~eIp~~gr~----~~Gv~~---i~L~ 686 (800)
T TIGR01063 618 SLTEFSNIRSNGIIAIKL--DDGDELISVRLTS--GDDEVMLGSKNGKAVRFPEEDVRPMGRA----ARGVRG---IKLK 686 (800)
T ss_pred EhHHhhhhccCCcccccC--CCCCEEEEEEEeC--CCCEEEEEECCCcEEEEEhhhcCCcCCC----CCCeec---ccCC
Confidence 7754321111 1111111 1123344433332 3334555566787766665432211110 000000 1111
Q ss_pred cCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 579 FGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 579 h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
-...|.++....++..|+..+..|.++...++.
T Consensus 687 ~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 687 NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred CCCEEEEEEEeccccEEEEEecCCcEEEEEHHH
Confidence 244566665555666788999999999988774
No 456
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=64.30 E-value=2.1e+02 Score=30.76 Aligned_cols=43 Identities=14% Similarity=-0.027 Sum_probs=34.6
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
....+......+.+|..+|.+++.++...=|.|.++|+.....
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3445556667899999999998888887779999999987654
No 457
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.14 E-value=1.4e+02 Score=28.71 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=37.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC
Q 003208 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (839)
Q Consensus 260 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 318 (839)
-+++...+|...+++-.-++|...|..+++. +. .+.-....|++++|.+
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-----L~-----eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-----LL-----EIKLPTPQITSCCFGG 263 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcE-----EE-----EEEcCCCceEEEEecC
Confidence 3455566888888888889999999999877 44 3333477899999984
No 458
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.35 E-value=73 Score=38.70 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.7
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
.....++|.| ...++|.++..|.|+++....
T Consensus 36 ~~~~~~afD~---~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDP---TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeecc---ccceEEEEEecccEEEecccc
Confidence 4456788888 899999999999999987643
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.35 E-value=80 Score=34.04 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred EEEEeeccCCccceEEEEeecCCeEEEEEee-ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCe
Q 003208 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (839)
Q Consensus 181 ~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 259 (839)
.+.+.-...++.|..++-.+.+|.+.++=.+ .++.... .++...-+.|.... ...+. .+...-.+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~----------eDgk~~v~CRt~~i---~~~~f-tss~~ltl 168 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF----------EDGKSTVNCRTTPV---AERFF-TSSTSLTL 168 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee----------cCCCceEEEEeecc---cceee-ccCCceee
Confidence 3443333346788888888888987776432 1111000 00000011111111 11111 11122356
Q ss_pred EEEEEcCCC---CEEEEEeCCCcEEEEEcccCcc
Q 003208 260 FRIEWSSCG---SKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 260 ~~l~~~~~~---~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
..++|+|+. ..|..-+.|..+|+||+.....
T Consensus 169 ~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 169 KQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 778999975 6788888999999999987543
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=60.33 E-value=2.1e+02 Score=29.56 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=15.6
Q ss_pred ecCCCEEEEecCCcc----EEEEeccc
Q 003208 589 SFEDEVLFCGDLRGN----LVLFPLLR 611 (839)
Q Consensus 589 s~~~~~la~gs~dg~----i~iw~~~~ 611 (839)
..++++.+.|+.++. +.+||...
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCC
Confidence 456888888887643 45777764
No 461
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=59.90 E-value=2.3e+02 Score=29.88 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=98.2
Q ss_pred CEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEc----cCCCE--EEEEe-CC---CcEEEEecCCcCccCcCCC
Q 003208 319 SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD----SLSSL--LVTAG-FD---SAIKVHQFQAFLPGSLESH 388 (839)
Q Consensus 319 ~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~----~~~~~--l~t~~-~d---g~i~iw~~~~~~~~~~~~~ 388 (839)
.+++....++-+.+||+.|+.+..+.. + .+..+..- -.|+. |+.++ .+ .+|++|.++...
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~~--G-r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~------- 138 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLPV--G-RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT------- 138 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE-S--S--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT-------
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeecC--C-CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC-------
Confidence 578888889999999999999887742 3 24444432 13332 34444 32 479999885310
Q ss_pred CcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe--c-CC--eEEEEeccceEEEEEecCCCCc--eeEEEeee
Q 003208 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT--S-ED--TLYIATNHGYLYHTKLCDMDSV--NWNKILQV 461 (839)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~--~~~~~~~~g~i~~~~~~~~~~~--~~~~~~~~ 461 (839)
..+-.+..+..+ + ......+..+|+. + ++ ..++...+|.+..|.+...... .-+.+.+.
T Consensus 139 ---------g~L~~v~~~~~p--~---~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 139 ---------GELTDVTDPAAP--I---ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp ---------TEEEE-CBTTC---E---E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred ---------CcceEcCCCCcc--c---ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 011111111100 0 0011124555553 3 34 4455667898988888754332 23344444
Q ss_pred cCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCC-CeEEE-
Q 003208 462 SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLG-HRFIF- 539 (839)
Q Consensus 462 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~- 539 (839)
....++-.+.+... ...|.++-++.-|.-|+.+...-.....+...-.......+.++......+ ..||+
T Consensus 205 ~~~sQ~EGCVVDDe--------~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLiv 276 (381)
T PF02333_consen 205 KVGSQPEGCVVDDE--------TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIV 276 (381)
T ss_dssp E-SS-EEEEEEETT--------TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEE
T ss_pred cCCCcceEEEEecc--------cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEE
Confidence 44445555555443 278999988877666666533211111111100111122333332322333 34555
Q ss_pred EeCCCCcEEEeeecC
Q 003208 540 TADPKGRLKLWQLCD 554 (839)
Q Consensus 540 s~~~dg~i~~wd~~~ 554 (839)
+.-.++...+|+...
T Consensus 277 SsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 277 SSQGDNSFAVYDREG 291 (381)
T ss_dssp EEGGGTEEEEEESST
T ss_pred EcCCCCeEEEEecCC
Confidence 444566799999874
No 462
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=59.66 E-value=1.9e+02 Score=28.72 Aligned_cols=153 Identities=10% Similarity=0.007 Sum_probs=82.3
Q ss_pred eEEeEEecccccccCCCccceeeEEEEE---cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (839)
.+...+++ ++++ .+.++. +...+.++..... ....+.+ ..++.-.|.+
T Consensus 25 ~~~s~AvS-------~dg~---~~A~v~~~~~~~~L~~~~~~~~----------------~~~~~~g--~~l~~PS~d~- 75 (253)
T PF10647_consen 25 DVTSPAVS-------PDGS---RVAAVSEGDGGRSLYVGPAGGP----------------VRPVLTG--GSLTRPSWDP- 75 (253)
T ss_pred cccceEEC-------CCCC---eEEEEEEcCCCCEEEEEcCCCc----------------ceeeccC--CccccccccC-
Confidence 57888888 8874 344444 2345555554321 1111122 2566677887
Q ss_pred cCCCcEEEEEeCCCcEEEEe-cCCCceE-EEEecCCce-eEEEEeeccCCccceEEEEee---cCCeEEEEEeeccccc-
Q 003208 144 CNGNRSLAIGCSDNSIRVWD-ISNSSII-LEVHSPERC-LLYSMKLWGDNLEALRIASGT---IYNEIIVWKVDWEHVA- 216 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd-~~~~~~~-~~~~~~~~~-~~~s~~~~~~~~~~~~l~sg~---~dg~i~vw~~~~~~~~- 216 (839)
++...+....+...+++. ..++... ..+...... .+.++.+ ++||..++.-. .++.|.+=-+......
T Consensus 76 --~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~v---SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~ 150 (253)
T PF10647_consen 76 --DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRV---SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV 150 (253)
T ss_pred --CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEE---CCCCcEEEEEEecCCCCeEEEEEEEeCCCCC
Confidence 776666655566666664 3333222 222222111 4555665 79998887654 3577777766521111
Q ss_pred cCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003208 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (839)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 278 (839)
+.. -..+..........+..+.|.+++..++.+...+
T Consensus 151 ~~~-------------------------l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 151 PRR-------------------------LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cce-------------------------eccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 100 1122222234457899999999988766655433
No 463
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=59.55 E-value=4e+02 Score=32.47 Aligned_cols=156 Identities=10% Similarity=0.133 Sum_probs=83.7
Q ss_pred CcEEEEeCC---------CccEEEEEEcC-----CCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEE
Q 003208 484 DDWVALGDG---------KGNMTIVRVVG-----DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (839)
Q Consensus 484 ~~~l~~g~~---------dg~i~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~ 549 (839)
..++++|.. .|.+.+|++-. ++...+.++...+..+..+.+. .+..-+|.++.+- ..+|.+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVs---avceV~G~l~~~~--GqKI~v 1120 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVS---AVCEVRGHLLSSQ--GQKIIV 1120 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceE---EEEEeccEEEEcc--CcEEEE
Confidence 457777653 48999999843 2222223333333323223221 2233455555433 357999
Q ss_pred eeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcce
Q 003208 550 WQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLN 629 (839)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 629 (839)
|+++..... .+-.|. .-++-......=.++|..|+.-..|.+..+... +.++..+.
T Consensus 1121 ~~l~r~~~l------------igVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqee---------p~rlsL~s 1176 (1366)
T KOG1896|consen 1121 RKLDRDSEL------------IGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE---------PYRLSLLS 1176 (1366)
T ss_pred EEeccCCcc------------eeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccC---------ceEEEEee
Confidence 999543220 011121 111112222223678999999999998877642 11221111
Q ss_pred eeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecC
Q 003208 630 YFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (839)
Q Consensus 630 ~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 672 (839)
+ .-..-.+.++.|.-... .-+++.+..|++|+++-....
T Consensus 1177 --r-d~~~l~v~s~EFLVdg~-~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1177 --R-DFEPLNVYSTEFLVDGS-NLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred --c-CCchhhceeeeeEEcCC-eeEEEEEcCCCcEEEEEeCCC
Confidence 0 01113488888884333 367899999999999987664
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=57.64 E-value=27 Score=39.57 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=43.0
Q ss_pred cCCCEEEEecCCccEEEEecccccccCCCccce--------eecCccee--eecc-cCCCceeEEEEEecc-CCceEEEe
Q 003208 590 FEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALH--------VEVSPLNY--FKGA-HGISTVSTLSVAKLR-SNQTEIRS 657 (839)
Q Consensus 590 ~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~-h~~~~Vt~i~~~~~~-~~~~~l~s 657 (839)
++...++++..||.+.................. +.+..+.- ..+. .....+.++...... .+..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788899999999988877522111110000 00100000 0000 011334455554211 25689999
Q ss_pred ecCcCcEEEEEEecCCc
Q 003208 658 TGGDGCICYLEYDKDRE 674 (839)
Q Consensus 658 ~~~Dg~i~iw~~~~~~~ 674 (839)
-++|+.+|+|++.+.+.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999865
No 465
>PRK10115 protease 2; Provisional
Probab=57.39 E-value=3.7e+02 Score=31.42 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=42.5
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeC------CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~------~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
-.+..+.++ || +++|+-+.| ..|++.|+.+|+.+...- .... ..++|+ +|++ .++
T Consensus 127 ~~l~~~~~S--pd----g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~-~~~~w~-------~D~~---~~~ 187 (686)
T PRK10115 127 YTLGGMAIT--PD----NTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVE-PSFVWA-------NDSW---TFY 187 (686)
T ss_pred EEEeEEEEC--CC----CCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcc-eEEEEe-------eCCC---EEE
Confidence 346677888 98 777777663 369999999886432221 1212 458888 7764 343
Q ss_pred EEEc-C-----cEEEEEEeecc
Q 003208 92 ALFG-E-----KRVKLFELNFE 107 (839)
Q Consensus 92 ~~~~-~-----~~i~iw~~~~~ 107 (839)
.+.. + ..|..+++.++
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCC
Confidence 3332 1 35666666543
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.11 E-value=2.7e+02 Score=29.48 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=20.6
Q ss_pred CeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEe
Q 003208 328 CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 328 g~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
|.+..++.++..+..+... .+..+.++|+++|+++++-.
T Consensus 164 g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence 3455555544444333221 22356788888887765533
No 467
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=55.73 E-value=2.3e+02 Score=28.57 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=41.6
Q ss_pred CccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee---C----CeeEEEECCCCeeeeEEeee----cCc
Q 003208 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS---G----SQVLLYDLEAGTLIRPFQVF----HGI 66 (839)
Q Consensus 5 ~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~---~----~~v~iwd~~~~~~~~~~~~~----~~~ 66 (839)
.+.+||..+.+ ..+.|++|.|. .+ ..++++|. + ..+..||.++.. ...+... -..
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~----~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SN----NQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPG 89 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cC----CEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCC
Confidence 35677776654 67899999998 54 67888876 2 468899987653 2223321 124
Q ss_pred eEEeEEec
Q 003208 67 RLHGISCN 74 (839)
Q Consensus 67 ~v~~i~~~ 74 (839)
+|..+.+.
T Consensus 90 pv~a~~~~ 97 (281)
T PF12768_consen 90 PVTALTFI 97 (281)
T ss_pred cEEEEEee
Confidence 68887775
No 468
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=54.34 E-value=2.3e+02 Score=28.10 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCcEEEEEcccCccCCCCCceeeece-EeeccccceEEeEEC
Q 003208 258 SIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLT 317 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~ 317 (839)
.|..++++|||.+++... .++.|.+=-+...... .......+. ........+..+.|.
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--VPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--CcceeccceEecccccCcceeeeec
Confidence 899999999999877665 3467777655432210 001111111 222335678899998
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=53.07 E-value=82 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.5
Q ss_pred ceEEEEEeecc--C-CCcEEEEEeCCCcEEEEecCC
Q 003208 134 WVFDVCFLKVC--N-GNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 134 ~I~~~~~~~~~--~-~~~~las~~~d~~i~vwd~~~ 166 (839)
.|.+++|+|.+ . .+.+||+.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999942 2 234788889999999998754
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=52.02 E-value=44 Score=37.86 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCeEEEEEcC----CCCEEEEEeCCCcEEEEEcccCcc
Q 003208 257 GSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 257 ~~V~~l~~~~----~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
+.+..+++++ +..++++.+.|+++|+||+.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566665 668999999999999999999766
No 471
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=51.50 E-value=28 Score=21.20 Aligned_cols=26 Identities=8% Similarity=0.285 Sum_probs=19.4
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEE
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPF 60 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~ 60 (839)
+.++++..++.+..+|.++|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 44444444899999999999887653
No 472
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=48.79 E-value=2.4e+02 Score=33.30 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=42.4
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCce-------eEEEEeeccC-------------CccceEEEEeecCCeEE
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERC-------LLYSMKLWGD-------------NLEALRIASGTIYNEII 206 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~s~~~~~~-------------~~~~~~l~sg~~dg~i~ 206 (839)
+..|+.++.++.|.-.|..+++.+-+....... .+-.+.++.. ...+..|+.++.|+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999888766432210 0011122111 12345788888999999
Q ss_pred EEEeecc
Q 003208 207 VWKVDWE 213 (839)
Q Consensus 207 vw~~~~~ 213 (839)
-.|.+++
T Consensus 274 ALDA~TG 280 (764)
T TIGR03074 274 ALDADTG 280 (764)
T ss_pred EEECCCC
Confidence 9998843
No 473
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.34 E-value=4.2e+02 Score=29.01 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~ 335 (839)
-.|..+..++.|..++-.+.+|.+.++=.+..... ..+......|.|-.+. +..+++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~----------s~~eDgk~~v~CRt~~i~~~~ftss~--------- 164 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN----------SEFEDGKSTVNCRTTPVAERFFTSST--------- 164 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCcc----------ceecCCCceEEEEeecccceeeccCC---------
Confidence 46788899999999999999997776653332220 1333333445555554 444444331
Q ss_pred CCceEEEeecccCCceEEEEEccCC---CEEEEEeCCCcEEEEecCC
Q 003208 336 DGKQLKMIKEHIGRGIWRCLYDSLS---SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 336 ~~~~~~~~~~h~~~~i~~~~~~~~~---~~l~t~~~dg~i~iw~~~~ 379 (839)
|- .+...+|+|+. ..|..-..|..||+|++..
T Consensus 165 ----------~l--tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 165 ----------SL--TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred ----------ce--eeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 11 25556787765 5677778899999999843
No 474
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=46.90 E-value=3e+02 Score=27.32 Aligned_cols=190 Identities=12% Similarity=0.013 Sum_probs=96.6
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i 99 (839)
..|+-. || +..-++++ .+.|--.|..+|+.. ++....+...++|..- |||. ..++-.+. -|
T Consensus 65 ~dvapa--pd----G~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~g-------pdg~---~Witd~~~-aI 126 (353)
T COG4257 65 FDVAPA--PD----GAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVG-------PDGS---AWITDTGL-AI 126 (353)
T ss_pred cccccC--CC----CceEEecCccccceecCCCCCceE-EEecCCCCCCceEEEC-------CCCC---eeEecCcc-ee
Confidence 355555 66 55555555 455556677777643 3444455568888888 8874 44444433 44
Q ss_pred EEEEeeccCCCCCCCCCccccceeeeE-eccCCCcceEEEEEeeccCCCcEEEEEeC---------CCcEEEEecCCCce
Q 003208 100 KLFELNFELSPNSQYQPETCVNLSLVQ-SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSI 169 (839)
Q Consensus 100 ~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~~~~~~~~~~~~~las~~~---------d~~i~vwd~~~~~~ 169 (839)
.-+|-++.. .+... ..+.-.+......|.+ .|++-.++.. .+.|++|+.-
T Consensus 127 ~R~dpkt~e-------------vt~f~lp~~~a~~nlet~vfD~---~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---- 186 (353)
T COG4257 127 GRLDPKTLE-------------VTRFPLPLEHADANLETAVFDP---WGNLWFTGQIGAYGRLDPARNVISVFPAP---- 186 (353)
T ss_pred EEecCcccc-------------eEEeecccccCCCcccceeeCC---CccEEEeeccccceecCcccCceeeeccC----
Confidence 444443221 11111 1222235567777888 8887777753 2334555442
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
....-+.++. .++|.+-++.-.++.|-.-|...+. .+.+
T Consensus 187 -------qG~gpyGi~a---tpdGsvwyaslagnaiaridp~~~~-------------------------------aev~ 225 (353)
T COG4257 187 -------QGGGPYGICA---TPDGSVWYASLAGNAIARIDPFAGH-------------------------------AEVV 225 (353)
T ss_pred -------CCCCCcceEE---CCCCcEEEEeccccceEEcccccCC-------------------------------ccee
Confidence 2222222322 4566655555455555555544110 0001
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
-.-.+....-..+--+|.++.-+|....+.+..+|.....
T Consensus 226 p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 226 PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 0011111222344456777777777777778777776543
No 475
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.47 E-value=2.3e+02 Score=30.23 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=30.8
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
...++|.++.|++ |.+.||.--.+++|.+++....+
T Consensus 64 ~d~G~I~SIkFSl---DnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 64 DDKGEIKSIKFSL---DNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cCCCceeEEEecc---CcceEEEEecCceEEEEecCCCc
Confidence 3457999999999 99999999999999999985443
No 476
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=46.17 E-value=1.5e+02 Score=29.19 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCcceEEEEEeeccC----CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEE
Q 003208 131 LSHWVFDVCFLKVCN----GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (839)
Q Consensus 131 h~~~I~~~~~~~~~~----~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~ 206 (839)
+...|+||+-.+-+. .-..|+.|.+++.|.|.|.+....+.+++-+.-....+..- ....-+-+|+.++.||.|+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G-~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSG-QYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEe-eeeccceEEEEEeCCCEEE
Confidence 456789988755221 22478999999999999999888888777554322222110 0111345788889999988
Q ss_pred EE
Q 003208 207 VW 208 (839)
Q Consensus 207 vw 208 (839)
+-
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=45.59 E-value=40 Score=21.63 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEeeCCeeEEEECCCCeeeeEEee
Q 003208 37 FLLAGSGSQVLLYDLEAGTLIRPFQV 62 (839)
Q Consensus 37 ~l~~g~~~~v~iwd~~~~~~~~~~~~ 62 (839)
+.+...+|.|+-.|.++|+.+-+++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 34444489999999999999998875
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=45.22 E-value=2.5e+02 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=24.9
Q ss_pred cceEEEEEecCC-------eEEEEeccceEEEEEecCCCCceeEEE
Q 003208 420 EYVRCLHLTSED-------TLYIATNHGYLYHTKLCDMDSVNWNKI 458 (839)
Q Consensus 420 ~~v~~~~~~~~~-------~~~~~~~~g~i~~~~~~~~~~~~~~~~ 458 (839)
..+..++|+|.| .+.+.+++|.+.++.-......+|..+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v 131 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRV 131 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeee
Confidence 379999999955 355567888887654322114556554
No 479
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=44.25 E-value=3.8e+02 Score=29.09 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
|.+++..+..+.+++...+|.|.+|++.
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 8899999888999999999999999994
No 480
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=43.71 E-value=5.9e+02 Score=29.74 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=41.4
Q ss_pred cceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeecc
Q 003208 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~ 107 (839)
+.+-++|. +|.+-+=|.++.-..+.+.+..+..|.+|+.+ .+ .-++...+|.|.-|-+...
T Consensus 196 gqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs-------~~-----HslvLT~~g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 196 GQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVS-------HT-----HSLVLTKFGSVYSWGLNGS 258 (1267)
T ss_pred CcEEEeccCCCCccCcCcccccccccccccccccceEEEEee-------cc-----eeEEEeecceEEEeecCcc
Confidence 45666655 67777777666544445555445568888888 44 6777778889999987643
No 481
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=43.58 E-value=67 Score=18.96 Aligned_cols=25 Identities=4% Similarity=0.073 Sum_probs=17.6
Q ss_pred EEEEeeecCCCEEEEecCCccEEEE
Q 003208 583 IMCLDASFEDEVLFCGDLRGNLVLF 607 (839)
Q Consensus 583 I~~l~~s~~~~~la~gs~dg~i~iw 607 (839)
...++++++|+++++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3467777888888777777777664
No 482
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=42.33 E-value=3.7e+02 Score=27.03 Aligned_cols=198 Identities=11% Similarity=0.017 Sum_probs=113.5
Q ss_pred CcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec-CCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
++-+.++.++ +++...+..+.-++|.|+.+...-..+.. ......+.+. -.|++...+..|.-+.+.|+
T Consensus 86 ~~l~~Dv~vs-----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~-----vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVS-----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY-----VSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEec-----ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE-----ecCCEEEEeeccCcEEEEEC
Confidence 3556777774 46677777778899999987654333321 1123344443 35778888777777778887
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
.... +.....+.......-..++.+ |++-..+..|+-+.+-|+.+...
T Consensus 156 sdps------------------------------sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 156 SDPS------------------------------SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred CCCC------------------------------CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC
Confidence 6211 233333333333333455554 66777788899999999988765
Q ss_pred CCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcCCCce-EEEeecccCCceEEE-EEccCCCEEEEEeC
Q 003208 291 KDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRC-LYDSLSSLLVTAGF 368 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~h~~~~i~~~-~~~~~~~~l~t~~~ 368 (839)
...++ .......+.++..++++....-.+--+.+-|.++.. ...+.......+.++ .+.-.+++......
T Consensus 204 -----Pvli~---~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadg 275 (370)
T COG5276 204 -----PVLIG---SYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADG 275 (370)
T ss_pred -----CeEEE---EEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeecc
Confidence 22221 111223677777787776666666667777774322 222211111112222 23334566666666
Q ss_pred CCcEEEEecCC
Q 003208 369 DSAIKVHQFQA 379 (839)
Q Consensus 369 dg~i~iw~~~~ 379 (839)
+.-+.+.|+..
T Consensus 276 a~gl~~idisn 286 (370)
T COG5276 276 AKGLPIIDISN 286 (370)
T ss_pred ccCceeEeccC
Confidence 66677777744
No 483
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=42.19 E-value=1.7e+02 Score=30.53 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCeeEEEECCCCeeeeEEeeec-CceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCC---CCcc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY---QPET 118 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~---~~~~ 118 (839)
+..+.+|.+.+++..+++.... +.-+..|.|.-. |+.+ .....++-+++.++++...... ..... .|..
T Consensus 228 g~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~-----p~~~-~~fvg~Al~s~i~~~~k~~~~t-ws~~~visvp~~ 300 (476)
T KOG0918|consen 228 GSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN-----PSKA-TGFVGCALSSNIFRFFKNSDDT-WSAEVVISVPPL 300 (476)
T ss_pred eeeeEEEecCCccceeEEecCCCCcceEEeeeccC-----CCcc-cceeeeeccCCceeeeeccccc-cceeEEEecCcc
Confidence 5689999999999999998755 444556666522 3321 0023333456777777665421 11000 0000
Q ss_pred ccceeeeEeccCCCcceEEEEEeeccCCCcEEEE-EeCCCcEEEEecCCCce
Q 003208 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSI 169 (839)
Q Consensus 119 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las-~~~d~~i~vwd~~~~~~ 169 (839)
.+. -..+....+-|+++-++= |.++|.. +=..|.|+-||+++...
T Consensus 301 kv~---~w~~~eMP~LITDilISm---DDRFLYvs~WLHGDirQYdIsDP~n 346 (476)
T KOG0918|consen 301 KVE---NWILPEMPGLITDILISL---DDRFLYVSNWLHGDIRQYDISDPKN 346 (476)
T ss_pred ccc---cccCcccchhhheeEEee---cCcEEEEEeeeecceeeeccCCCCC
Confidence 000 023445667889999887 7777754 44588999999987543
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=41.27 E-value=4.6e+02 Score=27.79 Aligned_cols=201 Identities=15% Similarity=0.121 Sum_probs=107.6
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec-cCCCcE--EEEEeC-C---CcEEE
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV-CNGNRS--LAIGCS-D---NSIRV 161 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~-~~~~~~--las~~~-d---~~i~v 161 (839)
.+|.+-.++-+.+||++ ++.++.+. .+.++.+.+--. .-++.. ||.++. + +.|++
T Consensus 70 lIigTdK~~GL~VYdL~----------------Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD----------------GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp EEEEEETTTEEEEEETT----------------S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred eEEEEeCCCCEEEEcCC----------------CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEE
Confidence 55666667889999997 45555553 234444444210 002322 444443 2 57999
Q ss_pred EecCCC-ceEEEEecC------CceeEEEEeeccCCccc-eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 162 WDISNS-SIILEVHSP------ERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 162 wd~~~~-~~~~~~~~~------~~~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
|.+... ..+..+... ....+|.+++.....++ .+++....+|.+..|.+......
T Consensus 132 f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g----------------- 194 (381)
T PF02333_consen 132 FRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG----------------- 194 (381)
T ss_dssp EEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-----------------
T ss_pred EEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-----------------
Confidence 987531 233333321 11225666665444444 57777888999999988621110
Q ss_pred ceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEE
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 313 (839)
....+.++.|.. ...+-++.......+|+.+-+|.-|+-|+.+..... ..+.+....-.+....|-.
T Consensus 195 ---------~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~---~~~~v~~~~g~~l~aDvEG 261 (381)
T PF02333_consen 195 ---------KVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGN---DRTLVASADGDGLVADVEG 261 (381)
T ss_dssp ---------SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S-----EEEEEBSSSSB-S-EEE
T ss_pred ---------cEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCC---cceeeecccccccccCccc
Confidence 013456666664 357889999988889999999987877777643221 0111110011123455666
Q ss_pred eEEC----C-CEE-EEEeCCCeEEEEcCCC
Q 003208 314 CCLT----D-SFI-ITAGEDCTCRVWGSDG 337 (839)
Q Consensus 314 ~~~~----~-~~l-~s~~~dg~i~vw~~~~ 337 (839)
++.- + .+| +|.-.+++..||+..+
T Consensus 262 laly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 262 LALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred eEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 6653 1 344 4444567899998743
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=40.99 E-value=95 Score=19.80 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=18.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSD-D--RSARIW 283 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~-d--~~i~iw 283 (839)
....-....|+|||++|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999988766553 3 444444
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.00 E-value=4.2 Score=42.76 Aligned_cols=111 Identities=9% Similarity=0.105 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEE
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw 333 (839)
.......|.|.+.-++.++.+..+..||-..... .....+.....++|. +..++.+-..+.+.+|
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~------------le~n~tg~aldm~wDkegdvlavlAek~~piylw 102 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI------------LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLW 102 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhccee------------cccCCchhHhhhhhccccchhhhhhhcCCCeeec
Confidence 3444567888887799999999999999765432 112233444556666 4566667778899999
Q ss_pred cCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 334 ~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
|++.+...++.......-.-+.|++....++.+...|.+.+++...
T Consensus 103 d~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 103 DVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred hhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccc
Confidence 9954333333221110111256888888888888889999998743
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=39.00 E-value=7.3e+02 Score=29.43 Aligned_cols=31 Identities=6% Similarity=-0.065 Sum_probs=23.8
Q ss_pred cceEEE-eeecccEEEEeccCccEEEEEeeCC
Q 003208 704 SCNYAA-GFASTDFIIWNLITEAKVVQIPCGG 734 (839)
Q Consensus 704 ~~~~~~-g~~~~~~~~w~~~~~~~~~~~~cgg 734 (839)
+.+++. |-.+..|+.+|.+++++|++...++
T Consensus 691 gglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~ 722 (764)
T TIGR03074 691 GGLVFIGATQDNYLRAYDLSTGKELWKARLPA 722 (764)
T ss_pred CCEEEEEeCCCCEEEEEECCCCceeeEeeCCC
Confidence 455555 6778889999999999998877644
No 488
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=38.51 E-value=7.9e+02 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=31.7
Q ss_pred CCcceEEEEEeecc---CCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 131 LSHWVFDVCFLKVC---NGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 131 h~~~I~~~~~~~~~---~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
.+..|.|+++.+.. ...++++.|+.|+++++..+....++..+
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l 626 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL 626 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence 34678899987732 23357999999999999998766555544
No 489
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=36.69 E-value=7.9e+02 Score=29.17 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=41.9
Q ss_pred ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 191 ~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
.-+..++....||+|.++|..+=+..... . ......+....+ ...-..+ .+...+..++|||.+.-
T Consensus 269 ~~~~~v~~~~~DGsI~~~dr~t~~~~~~~------~-~~~~~~~~v~s~------~~~Gf~f-p~~~~~~~vafSPt~c~ 334 (753)
T PF11635_consen 269 ELDIVVAFAFSDGSIEFRDRNTMKELNET------R-TNGEPPNTVTSL------FQAGFHF-PCIQPPLHVAFSPTMCS 334 (753)
T ss_pred ccCcEEEEEEcCCeEEEEecCcchhhccc------c-cccCCccccccc------ccccccc-ccCCCCceEEECcccce
Confidence 44567888999999999997632211110 0 000000000000 0001111 12236667999999999
Q ss_pred EEEEeCCCcEE
Q 003208 271 LVSVSDDRSAR 281 (839)
Q Consensus 271 l~s~s~d~~i~ 281 (839)
++....++.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 99999998866
No 490
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=36.67 E-value=5.5e+02 Score=27.30 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=8.1
Q ss_pred cEEEEecCCCce
Q 003208 158 SIRVWDISNSSI 169 (839)
Q Consensus 158 ~i~vwd~~~~~~ 169 (839)
.+.+||..+.+-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 578888876543
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=36.07 E-value=5.7e+02 Score=27.37 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=57.1
Q ss_pred CcEEEEeCCCccEEEEE-EcCCCCCCcceeeeEeecc-ceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccc
Q 003208 484 DDWVALGDGKGNMTIVR-VVGDVHTPQLSFTFTWSAG-IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (839)
Q Consensus 484 ~~~l~~g~~dg~i~l~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 561 (839)
+..+.+++.||-|.-|= ...+. .+.....-.+.-. .+.. +.....+.+-+++-+..|++.++.....+.
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~-~p~l~h~R~f~l~pa~~~----~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---- 350 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDG-QPHLNHIRNFKLAPAEVQ----FLLPETNRKGFYSLYRNGTLQSFYSTSEKL---- 350 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCC-CCcceeeeccccCcccce----eeccccccceEEEEcCCCceeeeecccCcc----
Confidence 35677888999988773 32221 1222111001000 0000 011122345566667778887776544321
Q ss_pred cCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
+ -+.. --..+.-+++||++.+|++- +.|.|+++.+++
T Consensus 351 ---------l--L~~~-~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 351 ---------L--LFER-AYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred ---------e--ehhh-hhcCcceeeeCcccchheee-cCCceEEEEecC
Confidence 0 1111 12246678999999999664 568899999886
No 492
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.59 E-value=5e+02 Score=26.55 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=48.3
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEE--eeccCCccceEEEEeecCCeEEEEEe
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM--KLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
-|+++...+ +|++|+|.-.-.+|.+.|..+++.+-.+.++... -+.+ .-+...-+-..+-.+..++.|.++|=
T Consensus 145 HiNsV~~~~---~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~-df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDD---DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNS-DFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecC---CccEEEEecccCEEEEEECCCCcEEEEeCCCCCC-cccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 467777777 8999999988889999999999999888766211 1110 00011223334444567788999985
No 493
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.17 E-value=8.6e+02 Score=29.14 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=39.4
Q ss_pred eeee-EEEEecCCCCCCCcceEEEee-CCeeEEEECCCCee---eeE------E-eeecCceEEeEEecccccccCCCcc
Q 003208 18 GEIS-ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL---IRP------F-QVFHGIRLHGISCNFINCTEGSVST 85 (839)
Q Consensus 18 ~~Vt-~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~---~~~------~-~~~~~~~v~~i~~~~~~~~~~~~~~ 85 (839)
.+|. |++-. +..|.+|+ +|.+..|....... ... + ..+...+|..|... +.-
T Consensus 16 ~~vd~~va~~--------~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~-------~~~- 79 (877)
T KOG2063|consen 16 LEVDLCVAAY--------GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVC-------ASL- 79 (877)
T ss_pred CccchHHHHh--------CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhc-------chh-
Confidence 3455 66655 56777777 99999999865321 111 0 01112245555554 221
Q ss_pred ceeeEEEEEcCcEEEEEEeec
Q 003208 86 RVTFEVALFGEKRVKLFELNF 106 (839)
Q Consensus 86 ~~~~~l~~~~~~~i~iw~~~~ 106 (839)
.++.+-.|+.|.++++..
T Consensus 80 ---~~ll~l~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 80 ---ELLLILSDSQIAVHKLPE 97 (877)
T ss_pred ---cchheecCCcceeeecCc
Confidence 445555677788888764
No 494
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=34.21 E-value=5.5e+02 Score=26.62 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCc------EEEEEcccCccCCCCCceeeeceEeecccc--------ceEEeEEC--CC
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRS------ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--------RVWDCCLT--DS 319 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~--~~ 319 (839)
-+.+.+|.+.+++..+++.++++. +...++...... ...+.......+..-.+ -.-++++. +.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG-IGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCC-ccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 366788999977778888888888 666665541110 00011111111111111 22355663 45
Q ss_pred EEEEEeCC------CeEEEEcCCCceEEEeec--------------ccCCceEEEEEccCCCEEEEEeC
Q 003208 320 FIITAGED------CTCRVWGSDGKQLKMIKE--------------HIGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 320 ~l~s~~~d------g~i~vw~~~~~~~~~~~~--------------h~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
++++.-.+ ..|+.++..|+.+..+.. ...++.-+|+++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 66655555 678888877766544411 12246889999999996666554
No 495
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=32.94 E-value=1.5e+02 Score=34.54 Aligned_cols=89 Identities=13% Similarity=0.230 Sum_probs=57.0
Q ss_pred CceEEEEeeecCCCEEEEecCCccEEEEecccccccCC----------CccceeecCcceeeecccCCCceeEEEEEecc
Q 003208 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK----------SVALHVEVSPLNYFKGAHGISTVSTLSVAKLR 649 (839)
Q Consensus 580 ~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~----------~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~ 649 (839)
+-.|.|+.-+.+|+.+.+|-.| ..||.+.-...... +......+-|..-..+.|| ++|+.++..
T Consensus 181 GinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipg-etI~Ql~vD--- 254 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPG-ETIKQLAVD--- 254 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcc-cchhheeec---
Confidence 4568899888889999998888 56665543211110 0001111223333345777 889999888
Q ss_pred CCceEEEeecCcCcEEEEEEecCCc
Q 003208 650 SNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 650 ~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
+....|.+-..-..|+-|.+...+.
T Consensus 255 qsRg~ly~Lr~kS~Vray~itkngl 279 (1263)
T COG5308 255 QSRGLLYVLRKKSAVRAYSITKNGL 279 (1263)
T ss_pred ccccceeeecccceeeeEeeecccc
Confidence 5566777777788899998877653
No 496
>PLN02153 epithiospecifier protein
Probab=32.73 E-value=5.9e+02 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=14.9
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCCc
Q 003208 146 GNRSLAIGCSD-----NSIRVWDISNSS 168 (839)
Q Consensus 146 ~~~~las~~~d-----~~i~vwd~~~~~ 168 (839)
++.+++.|+.+ +.+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 55666777653 357788887653
No 497
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.82 E-value=3.3e+02 Score=27.49 Aligned_cols=36 Identities=17% Similarity=0.511 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEe------CCCcEEEEEcccCcc
Q 003208 255 HEGSIFRIEWSSCGSKLVSVS------DDRSARIWEVRAEYW 290 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s------~d~~i~iwd~~~~~~ 290 (839)
-.+.|..|.|..+.+.++.|. ....+..||+.+...
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 457899999986666666664 355688899887644
No 498
>PRK05560 DNA gyrase subunit A; Validated
Probab=30.60 E-value=1e+03 Score=28.56 Aligned_cols=259 Identities=12% Similarity=0.043 Sum_probs=115.6
Q ss_pred CCEEEEEeCCCeEEEEcCCC--------ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCC
Q 003208 318 DSFIITAGEDCTCRVWGSDG--------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~~~--------~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 389 (839)
...++.-+.+|.++--.... .-...+....+..+..+........|+..+..|.+.......-+.....+..
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G 577 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARG 577 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC
Confidence 36788889999998775511 1111111111223444444455566777777787766655321111000000
Q ss_pred cccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe---cCCeEEEEeccceEEEEEecCCCCce--eEEEeeecCC
Q 003208 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT---SEDTLYIATNHGYLYHTKLCDMDSVN--WNKILQVSEG 464 (839)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~ 464 (839)
. .+. ....+...+..+.++.+. .+..+++.+.+|++.+..+.+..... -........+
T Consensus 578 ~--------~i~---------~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~ 640 (805)
T PRK05560 578 R--------PIV---------NLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG 640 (805)
T ss_pred e--------EHH---------HhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC
Confidence 0 000 000011122335555554 34578888999999887665432111 0011111222
Q ss_pred CceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC---cceeeeEeeccceeEEeeEEEeecCCCeEEEEe
Q 003208 465 MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP---QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (839)
Q Consensus 465 ~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 541 (839)
..+..+.... ....++..+..|.+..+....-.... ........ .....+..+. .+..+..+++..
T Consensus 641 D~lv~v~~~~--------~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~-~v~~~~~~il~v 709 (805)
T PRK05560 641 DELIGVRLTD--------GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL--REGDEVVSMD-VVREDSQEILTV 709 (805)
T ss_pred CEEEEEEEeC--------CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccC--CCCCEEEEEE-EEcCCCcEEEEE
Confidence 2333222211 12455566667877777653311110 00001111 2233344432 233344467777
Q ss_pred CCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecc
Q 003208 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 542 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~ 610 (839)
+..|.++...++.-.....- ....... .+. .....+..+........++..+.+|.+..++.+
T Consensus 710 Tk~G~iKr~~l~e~~~~~R~----~kG~~~l-kl~-~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 710 TENGYGKRTPVSEYRLQGRG----GKGVITI-KIT-EKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EeCCeEEEEEHHHhhccCCC----CCcEEee-ecc-CCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 88898887776543210000 0000110 010 112233333333334456677788888888766
No 499
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.57 E-value=5.4e+02 Score=25.37 Aligned_cols=141 Identities=10% Similarity=0.028 Sum_probs=72.5
Q ss_pred cceEEEEEecCC-eEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEE
Q 003208 420 EYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (839)
Q Consensus 420 ~~v~~~~~~~~~-~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l 498 (839)
+.+.++.|.|+| .+++.+..|+.+..++..... --..|-.|++++-
T Consensus 74 galSairf~~dG~~fiav~DtG~wfeg~i~rDa~---------------------------------grl~Gl~dgr~~p 120 (340)
T COG4246 74 GALSAIRFLPDGSQFIAVTDTGHWFEGKIQRDAN---------------------------------GRLAGLTDGRLTP 120 (340)
T ss_pred cchheeEeccCCceeEEEeecCceEEEEEEeccC---------------------------------CCcccccccceee
Confidence 357888999998 777778888776544322111 1123445565553
Q ss_pred E-EEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeecccc
Q 003208 499 V-RVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (839)
Q Consensus 499 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (839)
. +++...... +|....++ .+.- +|+.+++=..+.+|.+|-+......... .....+.|.. ..
T Consensus 121 m~d~~Gqpi~~------K~e~DaEG------LAvr-dG~~~VsfEr~hRI~iyp~~p~~~~~p~---rqlp~~~Pa~-eL 183 (340)
T COG4246 121 MRDLDGQPIQE------KWEVDAEG------LAVR-DGDALVSFERDHRIWIYPVPPFAGWGPP---RQLPAPKPAT-EL 183 (340)
T ss_pred cccCCCCCCcc------hhcccccc------ceEe-cCceEEEeeccceeEEeccCCccCCCCc---ccCCCCCchh-hc
Confidence 2 222211111 22222222 1222 7888888888888888776543221111 1111122222 12
Q ss_pred ccCceEEEEeeec-CCC---EEEEecCCccEEEEecc
Q 003208 578 CFGARIMCLDASF-EDE---VLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 578 ~h~~~I~~l~~s~-~~~---~la~gs~dg~i~iw~~~ 610 (839)
.|+..+..++.+| +|. -+++++..+..+.-++.
T Consensus 184 r~N~G~Eaia~a~~~gp~aga~VVvsEks~d~~~nl~ 220 (340)
T COG4246 184 RDNGGLEAIAAAPVNGPLAGALVVVSEKSEDKAGNLS 220 (340)
T ss_pred ccCCCeeeeeecCCCCCcccceEEEeecchhhhcchh
Confidence 5677788888764 333 24566666655554444
No 500
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=28.83 E-value=6.4e+02 Score=29.51 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=33.1
Q ss_pred EEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcE
Q 003208 594 VLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCI 664 (839)
Q Consensus 594 ~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i 664 (839)
.|+.=+.-|.|+.|+-.... ...-+..|++.+ .|..|+|. .+.|+-+.+||+.
T Consensus 400 kll~lte~g~Vy~w~s~ns~------~~~c~ftp~r~~-------~isdIa~~-----~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 400 KLLVLTELGEVYEWDSKNST------RTSCKFTPLRIF-------EISDIAWT-----ANSLILCTRDGCW 452 (1267)
T ss_pred heeeeccCCeEEEEecCCCc------eeeeecccceee-------ehhhhhhc-----cceEEEEecCcce
Confidence 34455677899999865431 122244455433 37788887 3568888899964
Done!