Query 003208
Match_columns 839
No_of_seqs 594 out of 4609
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 17:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 4.9E-57 1.7E-61 516.6 71.1 559 16-829 15-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.1E-56 3.8E-61 514.2 65.6 506 3-671 38-567 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 1.1E-52 3.8E-57 480.5 65.3 533 1-720 35-577 (577)
4 1nr0_A Actin interacting prote 100.0 7.2E-53 2.5E-57 482.6 60.8 501 8-671 9-522 (611)
5 1pgu_A Actin interacting prote 100.0 1.8E-50 6.1E-55 466.2 62.3 575 7-832 8-614 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 5.5E-49 1.9E-53 490.9 61.0 621 16-831 614-1248(1249)
7 1pgu_A Actin interacting prote 100.0 6.4E-48 2.2E-52 444.9 54.6 518 3-671 38-614 (615)
8 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-48 1E-52 484.3 51.0 554 1-670 634-1248(1249)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-46 5E-51 445.2 58.5 516 16-669 16-659 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 5.1E-42 1.7E-46 406.4 59.4 629 1-767 36-827 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-39 3.8E-44 388.9 47.2 462 16-668 12-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-37 4.1E-42 371.4 58.4 469 56-720 5-502 (814)
13 1vyh_C Platelet-activating fac 100.0 9.4E-38 3.2E-42 338.8 38.4 279 16-377 107-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1.7E-36 5.9E-41 316.8 38.6 284 15-377 30-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 6E-36 2.1E-40 316.2 41.8 283 16-376 54-340 (340)
16 4gqb_B Methylosome protein 50; 100.0 7.1E-36 2.4E-40 314.4 39.0 295 6-380 16-332 (344)
17 2pbi_B Guanine nucleotide-bind 100.0 3.1E-35 1.1E-39 312.1 39.8 288 16-376 63-354 (354)
18 2ynn_A Coatomer subunit beta'; 100.0 5.3E-35 1.8E-39 303.6 39.8 279 16-378 12-301 (304)
19 3iz6_a 40S ribosomal protein R 100.0 5.1E-36 1.7E-40 321.9 32.5 307 5-379 47-375 (380)
20 4g56_B MGC81050 protein; prote 100.0 1.4E-35 4.8E-40 315.0 33.9 296 3-379 25-343 (357)
21 1erj_A Transcriptional repress 100.0 1.3E-34 4.5E-39 312.4 40.0 291 16-379 63-389 (393)
22 2ynn_A Coatomer subunit beta'; 100.0 5.5E-34 1.9E-38 295.9 42.0 287 55-447 4-300 (304)
23 3ow8_A WD repeat-containing pr 100.0 2.9E-34 1E-38 299.9 38.3 290 57-447 25-319 (321)
24 2hes_X YDR267CP; beta-propelle 100.0 7.4E-34 2.5E-38 298.6 40.0 298 16-379 13-328 (330)
25 1vyh_C Platelet-activating fac 100.0 4.4E-34 1.5E-38 309.9 38.0 283 57-446 101-408 (410)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-33 3.8E-38 299.3 39.9 292 16-379 14-335 (345)
27 3frx_A Guanine nucleotide-bind 100.0 1.3E-33 4.3E-38 295.3 38.3 281 16-378 16-316 (319)
28 1r5m_A SIR4-interacting protei 100.0 1.5E-33 5.2E-38 308.5 40.0 348 6-447 27-423 (425)
29 4ery_A WD repeat-containing pr 100.0 1.9E-33 6.4E-38 293.7 38.5 280 16-378 22-311 (312)
30 3frx_A Guanine nucleotide-bind 100.0 2.4E-33 8.2E-38 293.2 39.1 290 122-503 7-317 (319)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.6E-33 2.2E-37 293.4 40.4 321 122-556 5-337 (345)
32 2pbi_B Guanine nucleotide-bind 100.0 1.4E-32 4.6E-37 291.8 40.9 296 122-551 54-354 (354)
33 2xzm_R RACK1; ribosome, transl 100.0 5.7E-33 1.9E-37 293.9 37.6 282 16-378 20-339 (343)
34 2hes_X YDR267CP; beta-propelle 100.0 1.3E-32 4.6E-37 289.0 39.1 311 122-503 4-328 (330)
35 2xzm_R RACK1; ribosome, transl 100.0 2E-32 6.7E-37 289.7 39.4 296 122-503 11-340 (343)
36 1r5m_A SIR4-interacting protei 100.0 7.3E-33 2.5E-37 303.1 37.0 337 129-610 42-424 (425)
37 1got_B GT-beta; complex (GTP-b 100.0 3E-32 1E-36 287.8 40.3 284 55-445 46-339 (340)
38 4gqb_B Methylosome protein 50; 100.0 3.4E-33 1.2E-37 293.8 32.5 257 2-338 49-332 (344)
39 1gxr_A ESG1, transducin-like e 100.0 5E-32 1.7E-36 286.3 39.7 320 16-447 8-335 (337)
40 3v7d_B Cell division control p 100.0 1.5E-31 5.3E-36 296.2 44.1 309 16-442 120-455 (464)
41 4aow_A Guanine nucleotide-bind 100.0 7E-32 2.4E-36 285.7 38.9 284 16-379 37-337 (340)
42 3iz6_a 40S ribosomal protein R 100.0 5.2E-33 1.8E-37 298.5 29.9 311 122-504 56-376 (380)
43 3vl1_A 26S proteasome regulato 100.0 8.5E-33 2.9E-37 302.1 32.1 327 18-448 57-418 (420)
44 1gxr_A ESG1, transducin-like e 100.0 2.6E-31 8.9E-36 280.8 41.4 279 16-377 50-335 (337)
45 2pm9_A Protein WEB1, protein t 100.0 5.2E-33 1.8E-37 303.5 28.1 286 16-379 11-337 (416)
46 4g56_B MGC81050 protein; prote 100.0 3.5E-32 1.2E-36 288.8 31.5 310 35-450 17-344 (357)
47 4aow_A Guanine nucleotide-bind 100.0 4.4E-31 1.5E-35 279.5 38.7 296 122-505 28-339 (340)
48 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-31 1.6E-35 290.5 39.8 286 1-379 136-442 (445)
49 2pm9_A Protein WEB1, protein t 100.0 5.5E-33 1.9E-37 303.2 22.9 306 1-379 42-414 (416)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-30 7E-35 285.3 43.5 313 16-448 117-441 (445)
51 3zwl_B Eukaryotic translation 100.0 6.5E-31 2.2E-35 281.6 38.0 280 16-379 31-346 (369)
52 3v7d_B Cell division control p 100.0 1.4E-30 4.8E-35 288.5 41.9 332 123-609 112-461 (464)
53 3dm0_A Maltose-binding peripla 100.0 3.5E-31 1.2E-35 308.3 38.8 282 16-378 381-692 (694)
54 3i2n_A WD repeat-containing pr 100.0 3.5E-31 1.2E-35 282.3 34.9 295 16-379 17-353 (357)
55 4ery_A WD repeat-containing pr 100.0 2.4E-30 8.2E-35 270.1 40.3 287 55-446 14-309 (312)
56 3vl1_A 26S proteasome regulato 100.0 4.9E-31 1.7E-35 288.1 36.6 299 2-378 76-418 (420)
57 1k8k_C P40, ARP2/3 complex 41 100.0 9E-31 3.1E-35 280.9 37.5 301 16-379 7-361 (372)
58 1erj_A Transcriptional repress 100.0 2.1E-30 7.2E-35 279.5 40.4 299 130-503 62-389 (393)
59 1sq9_A Antiviral protein SKI8; 100.0 3.6E-31 1.2E-35 286.9 34.5 284 16-379 15-395 (397)
60 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-31 4.1E-36 296.3 30.4 325 82-504 171-518 (524)
61 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-32 4.4E-37 304.1 22.3 306 1-380 180-518 (524)
62 3ei3_B DNA damage-binding prot 100.0 2.1E-30 7.2E-35 279.2 36.2 290 16-379 72-382 (383)
63 3k26_A Polycomb protein EED; W 100.0 3.9E-31 1.3E-35 283.0 29.3 322 15-378 16-365 (366)
64 3gre_A Serine/threonine-protei 100.0 1.8E-30 6.1E-35 285.2 33.4 348 35-500 39-437 (437)
65 3gre_A Serine/threonine-protei 100.0 1.2E-30 4.2E-35 286.5 29.5 304 8-376 47-437 (437)
66 4a11_B DNA excision repair pro 100.0 4.9E-30 1.7E-34 279.0 33.9 318 3-379 22-365 (408)
67 4gga_A P55CDC, cell division c 100.0 1.9E-29 6.4E-34 275.0 38.0 278 20-379 108-395 (420)
68 3dwl_C Actin-related protein 2 100.0 4.9E-31 1.7E-35 283.6 23.8 302 16-377 10-377 (377)
69 3dm0_A Maltose-binding peripla 100.0 2E-29 6.8E-34 293.5 38.6 291 123-502 373-692 (694)
70 4h5i_A Guanine nucleotide-exch 100.0 8.8E-30 3E-34 271.0 32.5 283 18-379 15-343 (365)
71 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-29 2.9E-33 258.5 38.9 276 16-379 17-296 (313)
72 4ggc_A P55CDC, cell division c 100.0 6.5E-29 2.2E-33 260.0 38.1 277 20-378 28-314 (318)
73 2pm7_B Protein transport prote 100.0 3.3E-29 1.1E-33 258.9 34.1 253 59-378 4-284 (297)
74 4e54_B DNA damage-binding prot 100.0 2.5E-30 8.6E-35 283.2 26.7 286 16-379 118-430 (435)
75 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-29 7.5E-34 275.9 33.2 269 16-379 132-414 (435)
76 4aez_A CDC20, WD repeat-contai 100.0 7.1E-29 2.4E-33 268.7 36.8 274 20-379 96-380 (401)
77 1sq9_A Antiviral protein SKI8; 100.0 5.7E-29 1.9E-33 269.5 35.5 312 59-449 11-395 (397)
78 3k26_A Polycomb protein EED; W 100.0 5.3E-29 1.8E-33 266.4 34.8 306 58-447 11-364 (366)
79 2pm7_B Protein transport prote 100.0 4.5E-29 1.5E-33 257.9 32.2 255 15-335 7-283 (297)
80 3i2n_A WD repeat-containing pr 100.0 1.3E-28 4.3E-33 262.5 35.1 312 54-449 7-353 (357)
81 3ei3_B DNA damage-binding prot 100.0 2.4E-28 8.2E-33 263.1 36.1 303 122-503 63-382 (383)
82 4h5i_A Guanine nucleotide-exch 100.0 4.4E-29 1.5E-33 265.6 29.2 297 256-612 14-344 (365)
83 1k8k_C P40, ARP2/3 complex 41 100.0 6.9E-28 2.4E-32 258.4 38.7 323 64-449 7-361 (372)
84 3odt_A Protein DOA1; ubiquitin 100.0 8.6E-28 2.9E-32 250.8 38.1 286 50-450 3-297 (313)
85 3bg1_A Protein SEC13 homolog; 100.0 2.4E-29 8.3E-34 262.4 26.1 249 64-378 12-292 (316)
86 3bg1_A Protein SEC13 homolog; 100.0 2.4E-29 8.2E-34 262.4 26.0 260 8-335 4-291 (316)
87 3zwl_B Eukaryotic translation 100.0 2.4E-27 8.2E-32 253.7 41.9 297 56-449 24-346 (369)
88 4e54_B DNA damage-binding prot 100.0 4.9E-29 1.7E-33 272.9 29.0 294 57-448 112-429 (435)
89 2j04_A TAU60, YPL007P, hypothe 100.0 9.5E-30 3.2E-34 272.1 21.9 273 13-378 11-296 (588)
90 4gga_A P55CDC, cell division c 100.0 1.3E-27 4.6E-32 260.3 39.1 280 68-451 108-397 (420)
91 3dw8_B Serine/threonine-protei 100.0 4.2E-28 1.4E-32 267.3 34.7 297 16-377 27-444 (447)
92 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-28 8.6E-33 259.1 31.1 296 16-379 10-337 (351)
93 3dwl_C Actin-related protein 2 100.0 1E-28 3.6E-33 265.4 26.4 313 65-446 11-376 (377)
94 3mmy_A MRNA export factor; mRN 100.0 9.5E-28 3.3E-32 256.8 32.4 280 16-377 38-344 (368)
95 4ggc_A P55CDC, cell division c 100.0 7E-27 2.4E-31 244.5 37.5 279 68-449 28-315 (318)
96 4a11_B DNA excision repair pro 100.0 7.8E-28 2.7E-32 261.5 29.9 357 42-501 21-403 (408)
97 4aez_A CDC20, WD repeat-contai 100.0 1.8E-27 6.3E-32 257.6 32.6 260 2-343 111-387 (401)
98 1k32_A Tricorn protease; prote 100.0 2.7E-25 9.3E-30 270.2 55.3 442 4-610 1-501 (1045)
99 2j04_A TAU60, YPL007P, hypothe 100.0 4.4E-29 1.5E-33 266.9 19.2 317 129-600 12-350 (588)
100 1yfq_A Cell cycle arrest prote 100.0 1.9E-27 6.7E-32 251.7 30.4 273 15-376 9-321 (342)
101 3dw8_B Serine/threonine-protei 100.0 4.6E-27 1.6E-31 258.9 33.7 320 65-445 28-442 (447)
102 3jrp_A Fusion protein of prote 100.0 1E-26 3.5E-31 250.0 34.9 256 54-378 1-286 (379)
103 3jrp_A Fusion protein of prote 100.0 1.1E-26 3.8E-31 249.6 34.8 249 16-335 10-285 (379)
104 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-26 5.8E-31 253.0 34.3 281 66-450 134-415 (435)
105 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-26 7.5E-31 244.1 32.2 286 16-379 18-336 (355)
106 1yfq_A Cell cycle arrest prote 100.0 5.1E-26 1.7E-30 240.7 34.6 298 252-609 7-322 (342)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-27 2E-31 253.9 26.7 285 20-379 37-342 (402)
108 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.4E-25 4.7E-30 246.8 34.2 285 17-378 4-390 (450)
109 2xyi_A Probable histone-bindin 99.9 2.4E-25 8.2E-30 243.1 34.1 254 64-379 127-410 (430)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.6E-25 1.2E-29 243.4 34.9 256 67-377 6-337 (450)
111 3mmy_A MRNA export factor; mRN 99.9 3.3E-25 1.1E-29 237.0 33.5 299 49-449 24-346 (368)
112 2w18_A PALB2, fancn, partner a 99.9 1.2E-25 4.1E-30 225.5 27.7 277 36-377 55-355 (356)
113 3f3f_A Nucleoporin SEH1; struc 99.9 6E-25 2E-29 233.0 34.4 295 126-452 5-340 (351)
114 1k32_A Tricorn protease; prote 99.9 1.8E-24 6.3E-29 262.9 42.9 441 67-670 16-501 (1045)
115 3jro_A Fusion protein of prote 99.9 2.4E-26 8.2E-31 268.8 25.2 254 15-336 7-284 (753)
116 2aq5_A Coronin-1A; WD40 repeat 99.9 8.4E-26 2.9E-30 244.8 26.2 258 1-335 54-340 (402)
117 4gq1_A NUP37; propeller, trans 99.9 4.8E-25 1.6E-29 237.3 30.5 306 34-377 30-387 (393)
118 3bws_A Protein LP49; two-domai 99.9 1.9E-24 6.7E-29 236.8 34.2 275 18-378 123-431 (433)
119 3vu4_A KMHSV2; beta-propeller 99.9 5E-24 1.7E-28 225.9 35.1 313 48-450 3-337 (355)
120 3jro_A Fusion protein of prote 99.9 3.7E-25 1.3E-29 258.7 28.8 253 58-379 3-285 (753)
121 3lrv_A PRE-mRNA-splicing facto 99.9 4.4E-25 1.5E-29 233.3 26.6 272 35-378 48-332 (343)
122 1l0q_A Surface layer protein; 99.9 4.7E-23 1.6E-27 222.4 38.3 262 35-379 2-275 (391)
123 2xyi_A Probable histone-bindin 99.9 3.4E-24 1.2E-28 233.9 27.9 258 16-336 127-409 (430)
124 4gq1_A NUP37; propeller, trans 99.9 3.5E-24 1.2E-28 230.6 26.2 303 67-449 17-389 (393)
125 3lrv_A PRE-mRNA-splicing facto 99.9 9.9E-24 3.4E-28 222.9 28.8 273 146-502 47-332 (343)
126 1l0q_A Surface layer protein; 99.9 8.5E-23 2.9E-27 220.4 36.5 261 1-348 9-287 (391)
127 3bws_A Protein LP49; two-domai 99.9 2.8E-22 9.5E-27 219.6 37.0 291 45-448 102-431 (433)
128 2w18_A PALB2, fancn, partner a 99.9 3.5E-23 1.2E-27 207.7 25.8 250 3-335 62-355 (356)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.6E-22 3E-26 213.0 30.5 285 19-383 64-391 (415)
130 1nir_A Nitrite reductase; hemo 99.9 6.6E-20 2.3E-24 204.3 37.5 280 24-379 144-458 (543)
131 1nir_A Nitrite reductase; hemo 99.9 4E-20 1.4E-24 206.1 32.9 299 2-379 157-514 (543)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.6E-20 3E-24 197.3 28.2 271 5-360 94-409 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.8 4.1E-19 1.4E-23 208.7 30.5 309 17-378 36-412 (741)
134 1xfd_A DIP, dipeptidyl aminope 99.8 3.4E-19 1.2E-23 208.8 25.8 327 5-378 4-392 (723)
135 3u4y_A Uncharacterized protein 99.8 2.7E-17 9.3E-22 172.6 32.0 275 35-380 10-305 (331)
136 1ri6_A Putative isomerase YBHE 99.8 6.1E-17 2.1E-21 170.7 34.3 275 36-378 6-307 (343)
137 3vgz_A Uncharacterized protein 99.8 1.1E-16 3.7E-21 169.6 36.0 267 17-370 40-335 (353)
138 2ojh_A Uncharacterized protein 99.8 5.9E-18 2E-22 174.2 24.0 249 2-328 20-293 (297)
139 1ri6_A Putative isomerase YBHE 99.8 6.1E-17 2.1E-21 170.7 32.1 284 2-360 13-334 (343)
140 2z3z_A Dipeptidyl aminopeptida 99.8 1.9E-17 6.5E-22 193.3 30.5 276 18-379 82-435 (706)
141 2ecf_A Dipeptidyl peptidase IV 99.8 1.2E-17 4.2E-22 196.1 28.3 278 19-381 110-461 (741)
142 1pby_B Quinohemoprotein amine 99.8 4.8E-17 1.6E-21 171.1 29.9 262 36-379 2-310 (337)
143 2z3z_A Dipeptidyl aminopeptida 99.8 2.4E-17 8.2E-22 192.4 28.8 344 20-448 28-434 (706)
144 2ojh_A Uncharacterized protein 99.8 4.7E-17 1.6E-21 167.4 26.9 249 43-370 21-293 (297)
145 1pby_B Quinohemoprotein amine 99.8 7.5E-17 2.5E-21 169.6 25.1 256 2-347 9-321 (337)
146 3hfq_A Uncharacterized protein 99.7 3E-15 1E-19 158.0 35.6 269 43-378 15-316 (347)
147 1xfd_A DIP, dipeptidyl aminope 99.7 8.9E-17 3.1E-21 188.2 25.1 284 1-368 34-429 (723)
148 3o4h_A Acylamino-acid-releasin 99.7 3.2E-16 1.1E-20 178.2 28.6 267 16-378 20-314 (582)
149 3vgz_A Uncharacterized protein 99.7 1.5E-15 5.2E-20 160.8 31.0 239 67-379 42-303 (353)
150 3u4y_A Uncharacterized protein 99.7 1.2E-15 4E-20 160.0 29.6 264 2-346 18-313 (331)
151 3hfq_A Uncharacterized protein 99.7 1.5E-14 5.2E-19 152.6 36.5 262 3-335 15-315 (347)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 1.9E-15 6.7E-20 163.6 27.2 159 254-438 90-259 (434)
153 3o4h_A Acylamino-acid-releasin 99.7 2.6E-15 8.8E-20 170.7 27.4 231 63-377 19-274 (582)
154 3scy_A Hypothetical bacterial 99.7 1.1E-13 3.9E-18 146.8 37.6 285 35-378 13-336 (361)
155 1z68_A Fibroblast activation p 99.7 9.2E-16 3.1E-20 179.3 23.0 308 21-378 19-390 (719)
156 2oit_A Nucleoporin 214KDA; NH2 99.7 1.8E-15 6.2E-20 163.8 22.1 223 4-288 23-279 (434)
157 1jmx_B Amine dehydrogenase; ox 99.7 7.9E-15 2.7E-19 154.9 25.0 271 21-346 3-335 (349)
158 1z68_A Fibroblast activation p 99.6 5E-15 1.7E-19 173.1 22.8 301 2-378 34-442 (719)
159 3scy_A Hypothetical bacterial 99.6 8.7E-13 3E-17 139.9 36.5 284 2-357 25-360 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.6 6.9E-14 2.3E-18 163.4 26.6 326 4-377 3-396 (740)
161 1jmx_B Amine dehydrogenase; ox 99.6 1.3E-13 4.4E-18 145.5 26.2 227 89-379 13-325 (349)
162 1jof_A Carboxy-CIS,CIS-muconat 99.6 1E-12 3.4E-17 139.5 29.8 268 44-379 14-341 (365)
163 2oiz_A Aromatic amine dehydrog 99.6 6.5E-13 2.2E-17 140.1 28.0 258 43-379 30-334 (361)
164 1q7f_A NHL, brain tumor CG1071 99.6 3E-12 1E-16 130.8 29.8 236 67-379 31-280 (286)
165 2oiz_A Aromatic amine dehydrog 99.5 2.4E-12 8.2E-17 135.8 28.4 273 2-361 29-360 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.1E-12 7.2E-17 137.0 27.9 251 19-340 41-344 (365)
167 3pe7_A Oligogalacturonate lyas 99.5 7.1E-13 2.4E-17 142.2 23.6 259 46-380 12-330 (388)
168 3pe7_A Oligogalacturonate lyas 99.5 1.3E-12 4.4E-17 140.1 23.2 273 23-377 41-380 (388)
169 4a5s_A Dipeptidyl peptidase 4 99.5 9E-12 3.1E-16 145.4 31.7 306 3-378 35-448 (740)
170 1q7f_A NHL, brain tumor CG1071 99.5 1.8E-11 6E-16 125.0 30.1 240 130-447 27-278 (286)
171 3dsm_A Uncharacterized protein 99.5 4.3E-11 1.5E-15 124.4 32.3 266 2-356 15-319 (328)
172 3fvz_A Peptidyl-glycine alpha- 99.5 6.1E-12 2.1E-16 131.2 24.8 245 16-336 22-321 (329)
173 3azo_A Aminopeptidase; POP fam 99.5 5.4E-12 1.9E-16 145.8 26.2 285 16-377 22-365 (662)
174 2dg1_A DRP35, lactonase; beta 99.4 4.8E-11 1.7E-15 124.8 28.4 271 18-370 6-301 (333)
175 3fvz_A Peptidyl-glycine alpha- 99.4 6E-11 2.1E-15 123.6 28.9 239 67-379 25-322 (329)
176 2z2n_A Virginiamycin B lyase; 99.4 6.5E-10 2.2E-14 114.0 36.2 287 4-379 3-295 (299)
177 3c5m_A Oligogalacturonate lyas 99.4 3.2E-11 1.1E-15 129.5 25.9 269 46-380 12-330 (396)
178 3dsm_A Uncharacterized protein 99.4 8.2E-11 2.8E-15 122.3 27.2 258 43-382 16-305 (328)
179 3azo_A Aminopeptidase; POP fam 99.4 1.6E-10 5.6E-15 133.3 32.6 243 66-377 24-321 (662)
180 3c5m_A Oligogalacturonate lyas 99.4 4.7E-12 1.6E-16 136.1 18.0 271 20-377 38-380 (396)
181 2z2n_A Virginiamycin B lyase; 99.4 3.5E-09 1.2E-13 108.5 37.4 275 66-447 15-293 (299)
182 1qks_A Cytochrome CD1 nitrite 99.4 2.9E-09 9.9E-14 118.0 38.5 273 35-379 167-477 (567)
183 2dg1_A DRP35, lactonase; beta 99.4 1.2E-10 3.9E-15 121.9 26.1 232 67-379 7-263 (333)
184 2gop_A Trilobed protease; beta 99.4 7.5E-10 2.6E-14 116.4 32.1 239 43-378 42-330 (347)
185 2gop_A Trilobed protease; beta 99.4 1.3E-10 4.3E-15 122.4 25.3 248 3-348 42-341 (347)
186 3e5z_A Putative gluconolactona 99.3 2.1E-10 7.1E-15 117.6 26.0 235 67-379 29-286 (296)
187 1qks_A Cytochrome CD1 nitrite 99.3 6.4E-09 2.2E-13 115.2 36.6 306 2-379 175-538 (567)
188 3no2_A Uncharacterized protein 99.3 8.1E-10 2.8E-14 111.1 26.3 209 89-367 7-231 (276)
189 2qc5_A Streptogramin B lactona 99.3 9.3E-09 3.2E-13 105.3 34.5 274 18-377 20-298 (300)
190 3no2_A Uncharacterized protein 99.3 1.1E-09 3.7E-14 110.2 26.5 186 35-290 5-198 (276)
191 1rwi_B Serine/threonine-protei 99.3 6.8E-10 2.3E-14 112.0 24.3 236 67-379 25-264 (270)
192 4a2l_A BT_4663, two-component 99.3 1.4E-06 4.9E-11 102.3 55.4 500 18-670 88-613 (795)
193 3e5z_A Putative gluconolactona 99.2 1.5E-09 5.1E-14 111.2 25.3 198 126-380 21-247 (296)
194 2qc5_A Streptogramin B lactona 99.2 3E-08 1E-12 101.4 35.0 274 66-446 20-297 (300)
195 2xdw_A Prolyl endopeptidase; a 99.2 3.9E-09 1.3E-13 122.6 29.3 241 18-338 125-416 (710)
196 2xdw_A Prolyl endopeptidase; a 99.2 8.8E-09 3E-13 119.5 31.8 243 67-379 126-414 (710)
197 4a2l_A BT_4663, two-component 99.2 4.4E-06 1.5E-10 98.1 54.8 448 20-611 133-614 (795)
198 3sjl_D Methylamine dehydrogena 99.2 1.4E-08 4.9E-13 105.0 28.9 273 22-379 37-363 (386)
199 2bkl_A Prolyl endopeptidase; m 99.2 1.7E-09 6E-14 125.1 24.3 200 130-378 118-348 (695)
200 2mad_H Methylamine dehydrogena 99.2 1.1E-07 3.9E-12 99.9 34.9 260 45-379 48-350 (373)
201 1rwi_B Serine/threonine-protei 99.1 6.5E-09 2.2E-13 104.7 23.8 234 19-336 25-263 (270)
202 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.9E-08 2.4E-12 102.5 31.5 261 35-379 54-337 (376)
203 3c75_H MADH, methylamine dehyd 99.1 2E-08 6.9E-13 106.0 26.6 257 44-379 99-402 (426)
204 2bkl_A Prolyl endopeptidase; m 99.1 5E-09 1.7E-13 121.2 22.1 247 18-345 121-405 (695)
205 3v9f_A Two-component system se 99.1 0.0001 3.4E-09 86.3 61.0 469 18-611 66-568 (781)
206 3v9f_A Two-component system se 99.1 6.3E-05 2.1E-09 88.1 56.1 523 6-672 7-569 (781)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 2.1E-07 7.2E-12 95.9 31.0 240 20-335 20-297 (314)
208 3sjl_D Methylamine dehydrogena 99.0 1.2E-07 4.1E-12 98.1 27.9 273 3-359 58-384 (386)
209 1xip_A Nucleoporin NUP159; bet 99.0 5.5E-09 1.9E-13 108.6 16.5 171 134-367 39-232 (388)
210 1yr2_A Prolyl oligopeptidase; 99.0 8.6E-08 2.9E-12 111.7 28.0 236 67-379 164-441 (741)
211 1xip_A Nucleoporin NUP159; bet 99.0 1.6E-08 5.6E-13 105.1 18.7 175 18-275 38-232 (388)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 2.9E-07 9.9E-12 94.8 27.8 239 67-379 19-299 (314)
213 1yr2_A Prolyl oligopeptidase; 98.9 1.1E-07 3.9E-12 110.6 26.6 245 18-344 163-448 (741)
214 3g4e_A Regucalcin; six bladed 98.9 9.7E-07 3.3E-11 90.0 30.5 226 68-368 15-261 (297)
215 2mad_H Methylamine dehydrogena 98.9 1.8E-06 6.1E-11 90.7 32.7 264 5-343 48-357 (373)
216 3hrp_A Uncharacterized protein 98.9 3.1E-07 1.1E-11 98.1 26.9 234 18-334 131-407 (409)
217 3q7m_A Lipoprotein YFGL, BAMB; 98.9 9.2E-07 3.2E-11 93.8 30.4 259 35-376 104-375 (376)
218 3hrp_A Uncharacterized protein 98.9 6.6E-07 2.3E-11 95.5 29.2 229 67-377 132-408 (409)
219 1kb0_A Quinohemoprotein alcoho 98.9 1.3E-07 4.5E-12 107.8 23.6 274 36-365 129-536 (677)
220 1yiq_A Quinohemoprotein alcoho 98.9 4.8E-07 1.6E-11 103.4 27.6 289 37-368 123-538 (689)
221 2qe8_A Uncharacterized protein 98.9 3.5E-07 1.2E-11 95.4 24.1 277 66-375 17-317 (343)
222 3hxj_A Pyrrolo-quinoline quino 98.9 6.8E-08 2.3E-12 100.4 18.3 310 7-446 11-321 (330)
223 3ei3_A DNA damage-binding prot 98.8 0.0008 2.7E-08 80.7 60.8 508 45-668 493-1059(1158)
224 3g4e_A Regucalcin; six bladed 98.8 4E-06 1.4E-10 85.4 29.5 217 22-317 17-249 (297)
225 2ghs_A AGR_C_1268P; regucalcin 98.8 1.8E-05 6.2E-10 81.7 34.0 227 68-369 51-292 (326)
226 3dr2_A Exported gluconolactona 98.8 1.3E-06 4.3E-11 89.6 24.9 227 67-373 46-301 (305)
227 3c75_H MADH, methylamine dehyd 98.8 1.2E-06 4E-11 92.5 24.1 267 4-343 99-409 (426)
228 1mda_H Methylamine dehydrogena 98.7 6.1E-07 2.1E-11 93.1 20.6 253 45-379 47-346 (368)
229 1yiq_A Quinohemoprotein alcoho 98.7 2E-06 7E-11 98.2 26.2 51 327-379 454-505 (689)
230 1kb0_A Quinohemoprotein alcoho 98.7 2.8E-06 9.7E-11 96.8 26.9 50 328-379 457-507 (677)
231 3hxj_A Pyrrolo-quinoline quino 98.7 5.4E-07 1.9E-11 93.5 18.9 278 3-379 39-324 (330)
232 3iuj_A Prolyl endopeptidase; h 98.7 2.4E-06 8.2E-11 98.4 25.8 248 16-344 127-412 (693)
233 2hz6_A Endoplasmic reticulum t 98.7 1.6E-08 5.6E-13 106.5 6.4 199 89-361 11-216 (369)
234 2ghs_A AGR_C_1268P; regucalcin 98.6 3E-05 1E-09 79.9 30.4 215 21-317 52-279 (326)
235 3iuj_A Prolyl endopeptidase; h 98.5 3.5E-06 1.2E-10 97.1 21.4 200 130-379 126-359 (693)
236 2iwa_A Glutamine cyclotransfer 98.5 1.7E-05 5.8E-10 77.5 22.9 195 20-288 23-238 (266)
237 3dr2_A Exported gluconolactona 98.5 1.7E-05 5.9E-10 81.0 24.2 225 20-331 47-301 (305)
238 3nol_A Glutamine cyclotransfer 98.5 1.7E-05 5.7E-10 76.4 21.5 182 21-277 46-245 (262)
239 2qe8_A Uncharacterized protein 98.5 1.5E-05 5.3E-10 82.9 23.2 242 18-331 17-315 (343)
240 1npe_A Nidogen, entactin; glyc 98.5 0.00021 7.1E-09 71.2 29.7 247 37-361 3-263 (267)
241 2iwa_A Glutamine cyclotransfer 98.4 7.6E-05 2.6E-09 72.9 25.0 209 122-379 9-237 (266)
242 3mbr_X Glutamine cyclotransfer 98.4 4.7E-05 1.6E-09 72.7 22.6 182 20-276 23-223 (243)
243 3nok_A Glutaminyl cyclase; bet 98.4 1.9E-05 6.5E-10 75.9 19.6 180 21-276 58-254 (268)
244 2ece_A 462AA long hypothetical 98.4 0.0001 3.4E-09 76.8 26.3 263 44-367 43-399 (462)
245 1mda_H Methylamine dehydrogena 98.4 1.1E-05 3.8E-10 83.6 18.5 270 5-358 47-366 (368)
246 2hz6_A Endoplasmic reticulum t 98.4 1.2E-07 4.1E-12 99.9 2.9 180 146-379 8-192 (369)
247 2ece_A 462AA long hypothetical 98.3 0.00029 9.8E-09 73.4 27.2 204 35-288 95-353 (462)
248 3nol_A Glutamine cyclotransfer 98.3 0.0002 6.8E-09 68.9 23.5 185 134-369 44-245 (262)
249 2ad6_A Methanol dehydrogenase 98.3 7.3E-05 2.5E-09 83.2 23.5 76 277-363 443-521 (571)
250 1kv9_A Type II quinohemoprotei 98.3 6.4E-05 2.2E-09 85.6 23.5 80 277-367 437-520 (668)
251 3mbr_X Glutamine cyclotransfer 98.3 0.00053 1.8E-08 65.4 25.4 194 122-368 9-223 (243)
252 1fwx_A Nitrous oxide reductase 98.2 0.00011 3.8E-09 79.4 22.4 286 43-368 24-407 (595)
253 3nok_A Glutaminyl cyclase; bet 98.2 0.00033 1.1E-08 67.3 21.7 192 123-368 44-254 (268)
254 2ad6_A Methanol dehydrogenase 98.1 0.0014 4.8E-08 72.8 30.0 52 326-379 442-494 (571)
255 1kv9_A Type II quinohemoprotei 98.1 0.00041 1.4E-08 78.9 25.2 51 327-379 437-488 (668)
256 1w6s_A Methanol dehydrogenase 98.0 0.00089 3E-08 74.4 25.5 79 277-366 452-534 (599)
257 1fwx_A Nitrous oxide reductase 98.0 0.00042 1.4E-08 74.9 21.3 199 35-287 101-361 (595)
258 3ei3_A DNA damage-binding prot 98.0 0.061 2.1E-06 64.6 73.5 235 89-379 339-591 (1158)
259 2fp8_A Strictosidine synthase; 98.0 0.0018 6.1E-08 66.4 25.0 113 257-379 185-313 (322)
260 1flg_A Protein (quinoprotein e 98.0 0.0026 8.9E-08 70.8 27.5 79 277-366 465-547 (582)
261 1flg_A Protein (quinoprotein e 97.9 0.0099 3.4E-07 66.0 31.5 51 327-379 465-516 (582)
262 1w6s_A Methanol dehydrogenase 97.9 0.0073 2.5E-07 67.0 30.0 52 326-379 451-503 (599)
263 3qqz_A Putative uncharacterize 97.9 0.0067 2.3E-07 58.7 25.6 211 126-376 20-250 (255)
264 2xbg_A YCF48-like protein; pho 97.8 0.028 9.6E-07 57.4 31.0 276 17-377 35-320 (327)
265 2p4o_A Hypothetical protein; p 97.8 0.012 4.2E-07 59.5 27.8 245 54-369 22-278 (306)
266 1npe_A Nidogen, entactin; glyc 97.8 0.026 8.8E-07 55.8 28.9 194 133-378 36-237 (267)
267 1k3i_A Galactose oxidase precu 97.8 0.00098 3.4E-08 75.9 20.6 114 22-169 190-326 (656)
268 2fp8_A Strictosidine synthase; 97.6 0.02 6.9E-07 58.4 25.1 239 20-336 21-312 (322)
269 3qqz_A Putative uncharacterize 97.6 0.059 2E-06 52.1 26.5 203 18-284 27-250 (255)
270 1k3i_A Galactose oxidase precu 97.5 0.0039 1.3E-07 71.0 20.7 95 98-211 220-322 (656)
271 1ijq_A LDL receptor, low-densi 97.4 0.13 4.5E-06 52.1 30.3 235 37-343 3-245 (316)
272 2p4o_A Hypothetical protein; p 97.4 0.11 3.9E-06 52.3 28.0 210 122-379 22-242 (306)
273 3v65_B Low-density lipoprotein 97.4 0.069 2.4E-06 55.9 26.9 223 89-377 88-316 (386)
274 3v64_C Agrin; beta propeller, 97.4 0.1 3.6E-06 53.6 27.8 240 20-344 36-283 (349)
275 3v65_B Low-density lipoprotein 97.3 0.12 4.1E-06 54.1 27.8 232 36-344 88-326 (386)
276 3v64_C Agrin; beta propeller, 97.3 0.14 4.8E-06 52.7 27.4 192 133-377 73-273 (349)
277 3sov_A LRP-6, low-density lipo 97.3 0.14 4.9E-06 51.7 26.5 234 36-343 5-245 (318)
278 2xbg_A YCF48-like protein; pho 97.2 0.25 8.5E-06 50.3 32.2 153 254-445 160-318 (327)
279 3tc9_A Hypothetical hydrolase; 97.2 0.21 7.3E-06 53.0 27.7 204 131-377 177-428 (430)
280 3p5b_L Low density lipoprotein 97.0 0.41 1.4E-05 50.2 28.2 222 89-377 84-318 (400)
281 4hw6_A Hypothetical protein, I 96.9 0.36 1.2E-05 51.2 26.9 119 258-377 274-431 (433)
282 3p5b_L Low density lipoprotein 96.9 0.51 1.8E-05 49.4 32.3 240 35-345 83-329 (400)
283 2xe4_A Oligopeptidase B; hydro 96.9 0.045 1.5E-06 63.1 21.0 198 130-377 170-396 (751)
284 1ijq_A LDL receptor, low-densi 96.9 0.45 1.5E-05 48.0 30.1 180 156-379 9-195 (316)
285 3sov_A LRP-6, low-density lipo 96.9 0.48 1.6E-05 47.8 26.1 223 89-377 5-236 (318)
286 3amr_A 3-phytase; beta-propell 96.7 0.6 2.1E-05 46.9 24.2 198 141-378 34-262 (355)
287 3m0c_C LDL receptor, low-densi 96.6 1.4 4.7E-05 50.5 29.7 238 36-343 396-639 (791)
288 2xe4_A Oligopeptidase B; hydro 96.5 0.12 4.2E-06 59.5 20.8 114 254-379 170-304 (751)
289 3m0c_C LDL receptor, low-densi 96.4 1.7 5.7E-05 49.8 29.1 183 155-380 402-590 (791)
290 2xzh_A Clathrin heavy chain 1; 96.3 0.94 3.2E-05 44.7 32.4 188 138-379 72-290 (365)
291 3amr_A 3-phytase; beta-propell 96.3 1.1 3.6E-05 45.2 24.9 199 89-336 42-262 (355)
292 4hw6_A Hypothetical protein, I 96.2 0.56 1.9E-05 49.7 22.5 153 20-211 141-303 (433)
293 3tc9_A Hypothetical hydrolase; 96.2 1.6 5.3E-05 46.2 27.1 155 19-211 138-300 (430)
294 2vpj_A Kelch-like protein 12; 96.0 0.71 2.4E-05 46.1 21.3 103 267-378 159-277 (301)
295 3pbp_A Nucleoporin NUP82; beta 96.0 0.2 6.8E-06 51.5 16.3 157 35-210 32-210 (452)
296 2xzh_A Clathrin heavy chain 1; 95.9 1.5 5E-05 43.4 31.3 225 5-290 50-293 (365)
297 3ii7_A Kelch-like protein 7; p 95.9 0.78 2.7E-05 45.9 21.0 101 89-211 13-126 (306)
298 1n7d_A LDL receptor, low-densi 95.7 0.023 7.8E-07 64.7 9.0 238 36-344 378-622 (699)
299 2xn4_A Kelch-like protein 2; s 95.6 1.2 3.9E-05 44.5 20.9 104 267-379 155-276 (302)
300 4asc_A Kelch repeat and BTB do 95.6 1.3 4.4E-05 44.5 21.0 94 267-369 148-253 (315)
301 3s94_A LRP-6, low-density lipo 95.5 4 0.00014 45.4 52.4 223 90-378 11-242 (619)
302 2p9w_A MAL S 1 allergenic prot 95.5 0.51 1.7E-05 47.0 16.7 113 258-378 64-214 (334)
303 2p9w_A MAL S 1 allergenic prot 95.3 2.7 9.2E-05 41.9 23.9 155 22-211 17-214 (334)
304 4a0p_A LRP6, LRP-6, low-densit 95.2 4.9 0.00017 44.7 59.8 222 89-377 7-235 (628)
305 3ott_A Two-component system se 95.1 6.3 0.00021 45.3 51.1 454 17-611 21-502 (758)
306 1bpo_A Protein (clathrin); cla 94.9 4 0.00014 42.1 30.5 226 4-290 48-292 (494)
307 3kya_A Putative phosphatase; s 94.7 5.3 0.00018 42.5 28.3 123 256-379 309-475 (496)
308 1bpo_A Protein (clathrin); cla 94.7 4.7 0.00016 41.6 33.3 188 138-379 71-289 (494)
309 3s94_A LRP-6, low-density lipo 94.7 6.8 0.00023 43.5 55.0 234 35-343 9-250 (619)
310 2woz_A Kelch repeat and BTB do 94.5 3.8 0.00013 41.1 21.0 94 267-369 158-263 (318)
311 2xn4_A Kelch-like protein 2; s 94.4 4.3 0.00015 40.2 22.0 24 146-169 108-136 (302)
312 1n7d_A LDL receptor, low-densi 94.2 0.12 4.1E-06 58.7 9.6 195 133-377 406-612 (699)
313 3pbp_A Nucleoporin NUP82; beta 94.0 2.1 7.3E-05 44.0 17.0 155 89-282 33-207 (452)
314 4a0p_A LRP6, LRP-6, low-densit 93.9 9.8 0.00033 42.3 60.6 231 36-343 7-244 (628)
315 1zgk_A Kelch-like ECH-associat 93.9 5.7 0.0002 39.5 21.1 62 146-211 121-192 (308)
316 1zgk_A Kelch-like ECH-associat 93.8 3.8 0.00013 40.8 19.2 103 267-378 168-286 (308)
317 2uvk_A YJHT; unknown function, 93.8 4.2 0.00015 41.5 19.9 19 35-53 20-40 (357)
318 3ii7_A Kelch-like protein 7; p 93.6 6.2 0.00021 39.1 23.4 102 36-169 13-130 (306)
319 1xi4_A Clathrin heavy chain; a 93.6 3.8 0.00013 49.1 20.3 272 34-379 34-331 (1630)
320 2ism_A Putative oxidoreductase 93.5 7.3 0.00025 39.7 25.2 72 67-167 32-115 (352)
321 1xi4_A Clathrin heavy chain; a 93.1 4.3 0.00015 48.7 19.8 188 138-379 71-289 (1630)
322 4asc_A Kelch repeat and BTB do 92.9 8.1 0.00028 38.5 21.6 24 267-290 196-224 (315)
323 2vpj_A Kelch-like protein 12; 92.8 6.2 0.00021 39.0 18.9 93 97-211 128-230 (301)
324 3sre_A PON1, serum paraoxonase 92.4 10 0.00035 38.4 26.1 142 42-211 81-251 (355)
325 1tl2_A L10, protein (tachylect 92.1 2.6 8.8E-05 39.1 13.0 154 257-445 41-206 (236)
326 3kya_A Putative phosphatase; s 92.0 15 0.0005 39.2 25.5 161 20-211 141-340 (496)
327 2ism_A Putative oxidoreductase 91.6 13 0.00045 37.7 27.1 26 134-163 32-57 (352)
328 2uvk_A YJHT; unknown function, 88.2 16 0.00055 37.0 17.3 23 146-168 65-97 (357)
329 2woz_A Kelch repeat and BTB do 87.4 24 0.00083 34.9 23.6 62 146-211 109-183 (318)
330 1tl2_A L10, protein (tachylect 86.9 6.1 0.00021 36.6 11.2 34 421-455 42-75 (236)
331 3a9g_A Putative uncharacterize 86.7 29 0.00099 35.2 29.6 31 133-168 29-59 (354)
332 3l6v_A GYRA, DNA gyrase subuni 85.8 33 0.0011 34.9 24.9 168 357-554 4-180 (370)
333 3a9g_A Putative uncharacterize 85.7 32 0.0011 34.8 28.9 105 256-368 28-154 (354)
334 3uc1_A DNA gyrase subunit A; D 85.0 33 0.0011 34.2 22.4 169 427-611 50-228 (327)
335 2be1_A Serine/threonine-protei 83.6 6.7 0.00023 39.4 10.9 65 147-211 10-75 (339)
336 2g8s_A Glucose/sorbosone dehyd 83.5 40 0.0014 34.0 24.7 27 134-164 19-46 (353)
337 3no0_A DNA gyrase subunit A; D 82.5 37 0.0013 32.9 22.3 165 427-611 32-196 (276)
338 3ott_A Two-component system se 81.4 79 0.0027 35.9 58.1 455 18-611 63-545 (758)
339 3sre_A PON1, serum paraoxonase 78.9 58 0.002 32.9 28.5 106 257-377 165-296 (355)
340 1wp5_A Topoisomerase IV; broke 78.1 57 0.002 32.4 26.0 213 358-611 3-225 (323)
341 1zi0_A DNA gyrase subunit A; b 72.6 77 0.0026 31.2 27.2 173 423-611 46-226 (307)
342 2zwa_A Leucine carboxyl methyl 71.8 70 0.0024 35.9 16.1 63 146-211 451-521 (695)
343 1suu_A DNA gyrase subunit A; t 70.1 88 0.003 30.8 28.6 218 358-611 6-231 (312)
344 4gq2_M Nucleoporin NUP120; bet 70.0 1.2E+02 0.0041 35.5 17.9 33 639-674 237-269 (950)
345 3das_A Putative oxidoreductase 66.4 1.1E+02 0.0038 30.6 26.0 73 67-166 33-116 (347)
346 2g8s_A Glucose/sorbosone dehyd 65.5 1.2E+02 0.004 30.5 26.3 59 307-366 269-340 (353)
347 3qhy_B Beta-lactamase inhibito 65.5 1E+02 0.0034 29.8 19.4 103 257-378 141-245 (282)
348 2wg3_C Hedgehog-interacting pr 63.9 1.5E+02 0.0051 31.2 16.4 25 529-553 19-44 (463)
349 2zwa_A Leucine carboxyl methyl 62.4 1.5E+02 0.0052 33.1 16.4 25 266-290 499-525 (695)
350 1cru_A Protein (soluble quinop 61.8 1.6E+02 0.0054 30.8 29.0 108 256-369 26-164 (454)
351 2be1_A Serine/threonine-protei 61.8 19 0.00066 36.0 7.8 118 37-176 12-140 (339)
352 3sbq_A Nitrous-oxide reductase 56.9 1.1E+02 0.0039 32.7 12.6 116 67-201 324-454 (638)
353 3kci_A Probable E3 ubiquitin-p 53.2 2E+02 0.0068 29.3 32.8 120 257-378 211-344 (389)
354 3sbq_A Nitrous-oxide reductase 46.8 1.3E+02 0.0046 32.2 11.2 69 135-211 325-407 (638)
355 3qhy_B Beta-lactamase inhibito 43.8 2.3E+02 0.0078 27.2 18.1 221 18-335 24-244 (282)
356 1cru_A Protein (soluble quinop 41.2 3.3E+02 0.011 28.4 30.3 26 421-446 28-54 (454)
357 1suu_A DNA gyrase subunit A; t 40.2 2.7E+02 0.0094 27.2 27.1 207 266-504 6-232 (312)
358 3kci_A Probable E3 ubiquitin-p 39.3 3.2E+02 0.011 27.7 28.3 110 269-378 11-134 (389)
359 4gq2_M Nucleoporin NUP120; bet 39.0 1.6E+02 0.0056 34.4 11.9 39 133-174 236-274 (950)
360 4fhn_B Nucleoporin NUP120; pro 35.4 1.4E+02 0.0046 36.0 10.8 33 639-674 239-271 (1139)
361 3b7f_A Glycosyl hydrolase, BNR 32.0 4.1E+02 0.014 26.7 24.5 65 310-374 116-203 (394)
362 2wg3_C Hedgehog-interacting pr 22.8 6.6E+02 0.023 26.1 14.2 27 20-52 16-44 (463)
363 3no0_A DNA gyrase subunit A; D 22.4 5.1E+02 0.017 24.7 24.1 171 350-554 69-246 (276)
364 4fhn_B Nucleoporin NUP120; pro 20.8 2.3E+02 0.0079 33.9 9.1 38 134-174 239-276 (1139)
365 3zwu_A Alkaline phosphatase PH 20.5 2.4E+02 0.0083 30.6 8.3 52 21-85 479-543 (592)
366 3das_A Putative oxidoreductase 20.4 6.4E+02 0.022 25.0 30.4 34 133-169 32-65 (347)
367 3f7f_A Nucleoporin NUP120; nuc 20.0 1.4E+02 0.0048 33.1 6.3 29 146-174 230-258 (729)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.9e-57 Score=516.59 Aligned_cols=559 Identities=17% Similarity=0.261 Sum_probs=431.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|+||+|+ || +++|++|+ |+.|+|||. +++++.++..|.. +|.+++|+ ||++ .+++++
T Consensus 15 H~~~V~~~a~s--pd----g~~las~~~d~~v~iWd~-~~~~~~~l~gh~~-~V~~l~fs-------pdg~---~las~~ 76 (577)
T 2ymu_A 15 HSSSVRGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFS-------PDGQ---TIASAS 76 (577)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCC-CEEEEEEC-------CCCC---EEEEEe
Confidence 88999999999 99 88999988 899999994 7899999998765 79999999 8884 555566
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|++|+|||+. .+++..+.+|.+.|.+++|+| ++++|++++.|+.+++|+..... .....
T Consensus 77 ~d~~i~vWd~~----------------~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~-~~~~~ 136 (577)
T 2ymu_A 77 DDKTVKLWNRN----------------GQLLQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQL-LQTLT 136 (577)
T ss_dssp TTSCEEEEETT----------------SCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCE-EEEEC
T ss_pred CCCEEEEEECC----------------CCEEEEEECCCCCEEEEEECC---CCCEEEEEcCCCceeecccccce-eeecc
Confidence 79999999964 467788999999999999999 99999999999999999986543 33333
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
.+. ..++.+.+ ++++..+++++.++.+++|+.. .........
T Consensus 137 ~~~-~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~ 178 (577)
T 2ymu_A 137 GHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN----------------------------------GQLLQTLTG 178 (577)
T ss_dssp CCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT----------------------------------SCEEEEEEC
T ss_pred CCC-Cceeeeee---ecCCccceecccccceeccccc----------------------------------eeeeeeccC
Confidence 332 33455554 6888899999999999999865 344556778
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 332 (839)
|...|.++.++|++++|++++.|+.|++||...... ..+.+|...|.+++|+ +.++++++.|+.|++
T Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~-----------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~ 247 (577)
T 2ymu_A 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE-----------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEE-----------EEEecCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999999999999999999999999999754322 3778899999999998 579999999999999
Q ss_pred EcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccce
Q 003208 333 WGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (839)
Q Consensus 333 w~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (839)
|+.+++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++|+..+...+.+.
T Consensus 248 w~~~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~-------------------------- 300 (577)
T 2ymu_A 248 WNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT-------------------------- 300 (577)
T ss_dssp ECTTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--------------------------
T ss_pred EeCCCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEe--------------------------
Confidence 9999999999999988 6999999999999999999999999998654333222
Q ss_pred eeccCCCcceEEEEEecCCeEE-EEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeC
Q 003208 413 RLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (839)
Q Consensus 413 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~ 491 (839)
+|...|.+++|+|++.++ .++.+|.+..|++... .. ..... +..++.++++.++. .++++|+
T Consensus 301 ----~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~-~~~~~-~~~~v~~~~~s~~g--------~~l~~~~ 363 (577)
T 2ymu_A 301 ----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HL-QTLTG-HSSSVWGVAFSPDG--------QTIASAS 363 (577)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EE-EEECC-CSSCEEEEEECTTS--------SEEEEEE
T ss_pred ----cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---ee-EEEeC-CCCCEEEEEECCCC--------CEEEEEe
Confidence 344679999999998655 4567888877664322 11 22223 35678888886654 8999999
Q ss_pred CCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeee
Q 003208 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (839)
Q Consensus 492 ~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 571 (839)
.||.|++|+... +. .... ..+...+.. ++++|++++|++++.|+.|++||.....
T Consensus 364 ~dg~v~~~~~~~-~~----~~~~---~~~~~~v~~--~~~s~dg~~l~~~~~d~~v~~~~~~~~~--------------- 418 (577)
T 2ymu_A 364 DDKTVKLWNRNG-QL----LQTL---TGHSSSVRG--VAFSPDGQTIASASDDKTVKLWNRNGQL--------------- 418 (577)
T ss_dssp TTSEEEEEETTC-CE----EEEE---ECCSSCEEE--EEECTTSSCEEEEETTSEEEEECTTCCE---------------
T ss_pred CCCEEEEEcCCC-CE----EEEe---cCCCCCeEE--EEECCCCCEEEEEeCCCEEEEEeCCCCE---------------
Confidence 999999998532 11 1111 123333444 5689999999999999999999964321
Q ss_pred eeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCC
Q 003208 572 VAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSN 651 (839)
Q Consensus 572 ~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~ 651 (839)
... ..+|...|++++|+||+++|++++.|++|++|+.+.. .+..+. .|. ..|++++|+ ++
T Consensus 419 ~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------------~~~~~~-~~~-~~v~~~~~s---pd 478 (577)
T 2ymu_A 419 LQT-LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------------LLQTLT-GHS-SSVRGVAFS---PD 478 (577)
T ss_dssp EEE-EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------------EEEEEE-CCS-SCEEEEEEC---TT
T ss_pred EEE-ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------EEEEEc-CCC-CCEEEEEEc---CC
Confidence 111 2368999999999999999999999999999997632 122233 444 689999999 89
Q ss_pred ceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEEEe
Q 003208 652 QTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIP 731 (839)
Q Consensus 652 ~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~ 731 (839)
+++|++++.|+.|++|+.+ ++. .... ..+ .+.|..+.|. +++.+++.|..++.+.+||.+. +.+
T Consensus 479 ~~~las~~~d~~i~iw~~~-~~~-~~~~---~~h-~~~v~~l~~s-----~dg~~l~s~~~dg~v~lwd~~~-~~~---- 542 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRN-GQL-LQTL---TGH-SSSVRGVAFS-----PDGQTIASASDDKTVKLWNRNG-QLL---- 542 (577)
T ss_dssp SCEEEEEETTSEEEEEETT-SCE-EEEE---ECC-SSCEEEEEEC-----TTSSCEEEEETTSEEEEECTTS-CEE----
T ss_pred CCEEEEEeCCCEEEEEcCC-CCE-EEEE---eCC-CCCEEEEEEc-----CCCCEEEEEECcCEEEEEeCCC-CEE----
Confidence 9999999999999999953 221 1111 111 2345555553 2355677777777777777421 110
Q ss_pred eCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEeccccccccccccccCC
Q 003208 732 CGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALN 811 (839)
Q Consensus 732 cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~~~~~~~~~~~ 811 (839)
....+|.+.|++|+|+|+
T Consensus 543 ------------------------------------------------~~~~~h~~~v~~~~fs~d-------------- 560 (577)
T 2ymu_A 543 ------------------------------------------------QTLTGHSSSVWGVAFSPD-------------- 560 (577)
T ss_dssp ------------------------------------------------EEEECCSSCEEEEEECTT--------------
T ss_pred ------------------------------------------------EEEcCCCCCEEEEEEcCC--------------
Confidence 111389999999999965
Q ss_pred CceEEEeccCCCeEEEEE
Q 003208 812 KSSWIATGCEDGTVRLTR 829 (839)
Q Consensus 812 ~~~~i~tg~eD~ti~iw~ 829 (839)
+++|+|||+|++||+|+
T Consensus 561 -g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 -GQTIASASSDKTVKLWN 577 (577)
T ss_dssp -SSCEEEEETTSCEEEEC
T ss_pred -CCEEEEEeCCCEEEEeC
Confidence 57899999999999996
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-56 Score=514.21 Aligned_cols=506 Identities=15% Similarity=0.137 Sum_probs=380.6
Q ss_pred CcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe--eeeEEeeecCceEEeEE
Q 003208 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 3 d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i~ 72 (839)
++++++|++.++. |..+|++++|+ |+ +++|++|+ |++|+|||+.+++ ...++..|.+ +|.+++
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~s--pd----g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-~v~~v~ 110 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS--PS----GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-PVKDIS 110 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-CEEEEE
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEEC--CC----CcEEEEEeCCCCEEEeECCCCcceeeEeecccCC-ceEEEE
Confidence 4689999997653 78899999999 99 89999998 8999999997543 3456666554 799999
Q ss_pred ecccccccCCCccceeeEEEEEcC----cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCc
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~ 148 (839)
|+ |+|+ .+++++.+ +.|++||. .+....+.+|.+.|++++|+| ++.
T Consensus 111 fs-------~dg~---~l~~~~~~~~~~~~v~~wd~-----------------~~~~~~l~gh~~~v~~v~f~p---~~~ 160 (611)
T 1nr0_A 111 WD-------SESK---RIAAVGEGRERFGHVFLFDT-----------------GTSNGNLTGQARAMNSVDFKP---SRP 160 (611)
T ss_dssp EC-------TTSC---EEEEEECCSSCSEEEEETTT-----------------CCBCBCCCCCSSCEEEEEECS---SSS
T ss_pred EC-------CCCC---EEEEEECCCCceeEEEEeeC-----------------CCCcceecCCCCCceEEEECC---CCC
Confidence 99 8883 44444433 46777763 234567889999999999999 876
Q ss_pred -EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 149 -SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 149 -~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
+|++|+.|++|++||..+++....+..|.. .+.++.| +|++.+|++|+.|+.|++||+.
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~f---spdg~~las~s~D~~i~lwd~~---------------- 220 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRY---NPDGSLFASTGGDGTIVLYNGV---------------- 220 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT----------------
T ss_pred eEEEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEE---CCCCCEEEEEECCCcEEEEECC----------------
Confidence 699999999999999998888888876654 4677777 6899999999999999999987
Q ss_pred CCCCCCceeeEeecccccceeeEEEe-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeee
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
.++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.+.+. ...+.
T Consensus 221 -----------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-----~~~~~ 278 (611)
T 1nr0_A 221 -----------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-----EKTIP 278 (611)
T ss_dssp -----------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEE
T ss_pred -----------------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----eeeec
Confidence 444555552 7999999999999999999999999999999988655 22111
Q ss_pred ceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 301 ~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
....+...+..+.|.+..+++++.|+.+++|+. .++....+.+|.. .|++++|+|++++|++++.|+.|++||+..
T Consensus 279 --~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 279 --VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp --CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred --CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 112344567778888899999999999999999 6777788889988 799999999999999999999999999954
Q ss_pred cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEe
Q 003208 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (839)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 459 (839)
...... ....|...|.+++|++++.++.++.++.+..|++.......-...
T Consensus 356 ~~~~~~----------------------------~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~- 406 (611)
T 1nr0_A 356 GISNRV----------------------------FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV- 406 (611)
T ss_dssp CCEEEC----------------------------SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC-
T ss_pred Cceeee----------------------------cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee-
Confidence 211000 012345679999999999999999999887766543211100000
Q ss_pred eecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEE
Q 003208 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (839)
Q Consensus 460 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 539 (839)
.........++++.++ +..++++ .++.+++|+ .++ . .... +...+.. ++++|++++|+
T Consensus 407 ~~~~~~~~~~~~~s~d--------g~~~~~~-~~~~v~~~~--~~~-~----~~~~----~~~~v~~--va~spdg~~la 464 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSAD--------GDIAVAA-CYKHIAIYS--HGK-L----TEVP----ISYNSSC--VALSNDKQFVA 464 (611)
T ss_dssp EEECSSCEEEEEECTT--------SSCEEEE-ESSEEEEEE--TTE-E----EEEE----CSSCEEE--EEECTTSCEEE
T ss_pred eeecCCCCcEEEEeCC--------CcEEEEE-eCceEEEEe--CCc-e----eeee----cCCCceE--EEEeCCCCEEE
Confidence 0011223445555444 2455555 467899997 211 0 0111 1122222 67899999999
Q ss_pred EeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCc
Q 003208 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV 619 (839)
Q Consensus 540 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~ 619 (839)
+|+.|+.|++||+..... .... ..+|...|++++||||+++||+|+.|++|++|++....
T Consensus 465 sgs~D~~v~lwd~~~~~~------------~~~~--~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~------ 524 (611)
T 1nr0_A 465 VGGQDSKVHVYKLSGASV------------SEVK--TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF------ 524 (611)
T ss_dssp EEETTSEEEEEEEETTEE------------EEEE--EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT------
T ss_pred EeCCCCeEEEEEccCCce------------eeee--ccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC------
Confidence 999999999999976421 0111 13689999999999999999999999999999997511
Q ss_pred cceeecCccee-eecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEec
Q 003208 620 ALHVEVSPLNY-FKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (839)
Q Consensus 620 ~~~~~~~~~~~-~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~ 671 (839)
. .... ..+.|. ..|++|+|+ +|+++|+|++.|++|++|+++.
T Consensus 525 ----~--~~~~~~~~~H~-~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 525 ----E--LAHTNSWTFHT-AKVACVSWS---PDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ----E--ESCCCCCCCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTC
T ss_pred ----c--eeeeeeeeecc-cceeEEEEC---CCCCEEEEEECCCcEEEEECCC
Confidence 0 1111 112365 789999999 8999999999999999999764
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-52 Score=480.49 Aligned_cols=533 Identities=17% Similarity=0.264 Sum_probs=416.1
Q ss_pred CCCcCccccccCCCc------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEe
Q 003208 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 73 (839)
+.|++|++||..... |.++|++|+|+ || +++|++++ |+.|+|||. +++.+.++..+.. +|.+++|
T Consensus 35 ~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fs--pd----g~~las~~~d~~i~vWd~-~~~~~~~~~~~~~-~v~~~~~ 106 (577)
T 2ymu_A 35 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAF 106 (577)
T ss_dssp ETTSEEEEECTTSCEEEEEECCSSCEEEEEEC--TT----SSEEEEEETTSCEEEEET-TSCEEEEECCCSS-CEEEEEE
T ss_pred eCCCEEEEEECCCCEEEEEeCCCCCEEEEEEC--CC----CCEEEEEeCCCEEEEEEC-CCCEEEEEECCCC-CEEEEEE
Confidence 468999999965432 78899999999 99 88998887 899999995 6788888887665 7999999
Q ss_pred cccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE
Q 003208 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (839)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~ 153 (839)
+ |+++ .+++++.|+.+++|+.. ........+|...|.++.++| ++..++++
T Consensus 107 s-------~d~~---~l~~~~~d~~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~ 157 (577)
T 2ymu_A 107 S-------PDGQ---TIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVWGVAFSP---DGQTIASA 157 (577)
T ss_dssp C-------TTSS---EEEEEETTSCEEEEETT----------------CCEEEEECCCSSCEEEEEECT---TSSCEEEE
T ss_pred C-------CCCC---EEEEEcCCCceeecccc----------------cceeeeccCCCCceeeeeeec---CCccceec
Confidence 9 8884 56666779999999975 345566778999999999999 99999999
Q ss_pred eCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 154 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
+.++.+++|+.... .......+. ..++.+.+ ++++.+|++++.|+.|++|+..
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~-~~v~~~~~---~~~~~~l~~~~~d~~v~~w~~~---------------------- 210 (577)
T 2ymu_A 158 SDDKTVKLWNRNGQ-LLQTLTGHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN---------------------- 210 (577)
T ss_dssp ETTSEEEEECTTSC-EEEEEECCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT----------------------
T ss_pred ccccceecccccee-eeeeccCCC-cceeeeee---cCCCCEEEEEcCCCEEEEEeCC----------------------
Confidence 99999999997544 333333333 23455555 6889999999999999999954
Q ss_pred ceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEE
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 313 (839)
.+.+..+.+|...|.+++|+|++++|++++.|+.|++||...... ..+.+|...|.+
T Consensus 211 ------------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~-----------~~~~~~~~~v~~ 267 (577)
T 2ymu_A 211 ------------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGHSSSVNG 267 (577)
T ss_dssp ------------SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----------EEECCCSSCEEE
T ss_pred ------------CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE-----------EEEecCCCCEEE
Confidence 456778889999999999999999999999999999999754322 377889999999
Q ss_pred eEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcc
Q 003208 314 CCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (839)
Q Consensus 314 ~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 391 (839)
++|+ +..+++++.|+.+++|+.+++.+..+.+|.. .|++++|+|+++.|++++.|+.|++|+..+..+..+
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~------ 340 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL------ 340 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE------
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE------
Confidence 9998 5799999999999999999899999999988 699999999999999999999999999865433222
Q ss_pred cccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEE-EeccceEEEEEecCCCCceeEEEeeecCCCceEEe
Q 003208 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICM 470 (839)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 470 (839)
..+...+.+++|+|++.+++ ++.+|.+..|+.. . +....... +..++.++
T Consensus 341 ------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---~-~~~~~~~~-~~~~v~~~ 391 (577)
T 2ymu_A 341 ------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---G-QLLQTLTG-HSSSVRGV 391 (577)
T ss_dssp ------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---C-CEEEEEEC-CSSCEEEE
T ss_pred ------------------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---C-CEEEEecC-CCCCeEEE
Confidence 23445799999999986555 5677888766532 1 11223333 35678888
Q ss_pred eecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEe
Q 003208 471 DLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLW 550 (839)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~w 550 (839)
++.++. +++++++.|+.|++|+... +. .... ..+...+.. ++++|++++|++++.|+.|++|
T Consensus 392 ~~s~dg--------~~l~~~~~d~~v~~~~~~~-~~----~~~~---~~~~~~v~~--~~~s~d~~~l~~~~~d~~v~~w 453 (577)
T 2ymu_A 392 AFSPDG--------QTIASASDDKTVKLWNRNG-QL----LQTL---TGHSSSVWG--VAFSPDDQTIASASDDKTVKLW 453 (577)
T ss_dssp EECTTS--------SCEEEEETTSEEEEECTTC-CE----EEEE---ECCSSCEEE--EEECTTSSEEEEEETTSEEEEE
T ss_pred EECCCC--------CEEEEEeCCCEEEEEeCCC-CE----EEEe---cCCCCCeEE--EEECCCCCEEEEEcCCCEEEEE
Confidence 887654 7899999999999998532 11 1111 123334444 5689999999999999999999
Q ss_pred eecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCccee
Q 003208 551 QLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNY 630 (839)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 630 (839)
|..... ... ..+|...|++++|+|++++||+|+.|++|+||+.... ....
T Consensus 454 ~~~~~~---------------~~~-~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~--------------~~~~ 503 (577)
T 2ymu_A 454 NRNGQL---------------LQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQT 503 (577)
T ss_dssp ETTSCE---------------EEE-EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC--------------EEEE
T ss_pred ECCCCE---------------EEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC--------------EEEE
Confidence 965321 111 2368999999999999999999999999999996531 2233
Q ss_pred eecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEe
Q 003208 631 FKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAG 710 (839)
Q Consensus 631 ~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 710 (839)
+. .|. ..|++|+|+ +++++|++++.||.|++|++. + ..+.. ...+ .+.|..+.|. +|+.+++.|
T Consensus 504 ~~-~h~-~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~~-~-~~~~~---~~~h-~~~v~~~~fs-----~dg~~l~s~ 567 (577)
T 2ymu_A 504 LT-GHS-SSVRGVAFS---PDGQTIASASDDKTVKLWNRN-G-QLLQT---LTGH-SSSVWGVAFS-----PDGQTIASA 567 (577)
T ss_dssp EE-CCS-SCEEEEEEC---TTSSCEEEEETTSEEEEECTT-S-CEEEE---EECC-SSCEEEEEEC-----TTSSCEEEE
T ss_pred Ee-CCC-CCEEEEEEc---CCCCEEEEEECcCEEEEEeCC-C-CEEEE---EcCC-CCCEEEEEEc-----CCCCEEEEE
Confidence 33 454 689999999 889999999999999999953 2 22111 1112 4456667664 346778889
Q ss_pred eecccEEEEe
Q 003208 711 FASTDFIIWN 720 (839)
Q Consensus 711 ~~~~~~~~w~ 720 (839)
..++.+.+||
T Consensus 568 ~~D~~i~~Wd 577 (577)
T 2ymu_A 568 SSDKTVKLWN 577 (577)
T ss_dssp ETTSCEEEEC
T ss_pred eCCCEEEEeC
Confidence 9999999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.2e-53 Score=482.57 Aligned_cols=501 Identities=13% Similarity=0.093 Sum_probs=373.7
Q ss_pred ccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccce
Q 003208 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (839)
Q Consensus 8 ~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 87 (839)
+|-.....+.+.+++++|+ || +++|+++.++.|+|||+.+++.+..+..|.. .|.+++|+ |+|+
T Consensus 9 ~~~~~~~~~~g~~~~~~~s--pd----g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-~v~~~~~s-------pdg~-- 72 (611)
T 1nr0_A 9 LFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSGY-- 72 (611)
T ss_dssp EECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTSS--
T ss_pred EECCCCCcccCceeEEeeC--CC----CCEEEeCCCCEEEEecCCCcccCeEecCCCC-ceEEEEEC-------CCCc--
Confidence 3443334466788999999 99 8899999989999999999999999988766 69999999 9983
Q ss_pred eeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC----CcEEEEe
Q 003208 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVWD 163 (839)
Q Consensus 88 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d----~~i~vwd 163 (839)
.+++++.|++|+|||+.... ......+.+|.++|.+++|+| ++++||+++.+ +.|++||
T Consensus 73 -~lasg~~d~~v~lWd~~~~~-------------~~~~~~~~~~~~~v~~v~fs~---dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 73 -YCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp -EEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEEETT
T ss_pred -EEEEEeCCCCEEEeECCCCc-------------ceeeEeecccCCceEEEEECC---CCCEEEEEECCCCceeEEEEee
Confidence 44445569999999986433 345567889999999999999 99999998865 3688887
Q ss_pred cCCCceEEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
. ++....+.++.. .+.++.| +|++. .|++|+.|+.|++||..
T Consensus 136 ~--~~~~~~l~gh~~-~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~------------------------------- 178 (611)
T 1nr0_A 136 T--GTSNGNLTGQAR-AMNSVDF---KPSRPFRIISGSDDNTVAIFEGP------------------------------- 178 (611)
T ss_dssp T--CCBCBCCCCCSS-CEEEEEE---CSSSSCEEEEEETTSCEEEEETT-------------------------------
T ss_pred C--CCCcceecCCCC-CceEEEE---CCCCCeEEEEEeCCCeEEEEECC-------------------------------
Confidence 4 445555555543 4677777 56665 69999999999999987
Q ss_pred cccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec--eEeeccccceEEeEEC--C
Q 003208 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--D 318 (839)
Q Consensus 243 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~--~ 318 (839)
..+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++. ...+.. ....+|...|.+++|+ +
T Consensus 179 --~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 179 --PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp --TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred --CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-----eeeeccccccccccCCCEEEEEECCCC
Confidence 6777888999999999999999999999999999999999987654 221100 0112799999999998 5
Q ss_pred CEEEEEeCCCeEEEEcC-CCceEEEeecccC--CceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccC
Q 003208 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFN 395 (839)
Q Consensus 319 ~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~--~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 395 (839)
.+|++++.|++|++||+ +++.+..+..+.. ..+..+.| ++..+++++.|+.+++|+.....
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~-------------- 315 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGS-------------- 315 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE--------------
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCC--------------
Confidence 89999999999999999 7888877764321 13555666 67889999999999999985321
Q ss_pred CCcceEEeecCCCccceeeccCCCcceEEEEEecCCeE-EEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecC
Q 003208 396 GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (839)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 474 (839)
......+|...|++++|+|++.+ ++++.++.+..|++..... .......+...+.++++.+
T Consensus 316 ---------------~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 316 ---------------IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---NRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp ---------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EECSSCSCSSCEEEEEECT
T ss_pred ---------------cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---eeecccCCcceEEEEEECC
Confidence 01122356678999999999855 4556789898777654322 2222223456788887764
Q ss_pred CCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecC
Q 003208 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (839)
Q Consensus 475 ~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~ 554 (839)
+ ..+++++.|+.+++|++.+.............. ..... .+++++++.++++ .++.+++|+...
T Consensus 378 ~---------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~----~~~~~--~~~s~dg~~~~~~-~~~~v~~~~~~~ 441 (611)
T 1nr0_A 378 K---------GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS----SQPLG--LAVSADGDIAVAA-CYKHIAIYSHGK 441 (611)
T ss_dssp T---------SCEEEEETTTEEEEECSSSSSSCTTSCCEEECS----SCEEE--EEECTTSSCEEEE-ESSEEEEEETTE
T ss_pred C---------CcEEEEEcCCceEEeecCCccccccceeeeecC----CCCcE--EEEeCCCcEEEEE-eCceEEEEeCCc
Confidence 3 468899999999999987654332211111111 11222 5678999887777 467899998221
Q ss_pred CCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecc
Q 003208 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGA 634 (839)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (839)
. ..+ .|...+++++|+|||++||+|+.|++|++|++.... +..... ..
T Consensus 442 -~----------------~~~--~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-----------~~~~~~--~~ 489 (611)
T 1nr0_A 442 -L----------------TEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----------VSEVKT--IV 489 (611)
T ss_dssp -E----------------EEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------EEEEEE--EE
T ss_pred -e----------------eee--ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-----------eeeeec--cC
Confidence 0 011 367779999999999999999999999999987421 111111 14
Q ss_pred cCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEec
Q 003208 635 HGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (839)
Q Consensus 635 h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~ 671 (839)
|. ..|++|+|+ +++++|++++.|+.|++|++..
T Consensus 490 h~-~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 490 HP-AEITSVAFS---NNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CS-SCEEEEEEC---TTSSEEEEEETTSCEEEEEGGG
T ss_pred CC-CceEEEEEC---CCCCEEEEEcCCCCEEEEEcCC
Confidence 54 689999999 8999999999999999999654
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-50 Score=466.22 Aligned_cols=575 Identities=12% Similarity=0.107 Sum_probs=438.9
Q ss_pred cccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCC----eeeeEEeeecCce-EEeEEecccccccC
Q 003208 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFHGIR-LHGISCNFINCTEG 81 (839)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~----~~~~~~~~~~~~~-v~~i~~~~~~~~~~ 81 (839)
.+|......|.+.|++++|+ |+ +++|+++.++.|+|||+.++ +.+..+..|.. . |.+++|+
T Consensus 8 ~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~s------- 73 (615)
T 1pgu_A 8 EIIPPQPSTQRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFS------- 73 (615)
T ss_dssp EEECCCCCCCTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEEC-------
T ss_pred hccCCCCCCccCceeEEEEC--CC----CCEEEEecCCeEEEEECCCCCCccccceEEecCCC-ceEEEEEEC-------
Confidence 44555555688999999999 99 89999999999999999999 88888887655 6 9999999
Q ss_pred C--CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC---
Q 003208 82 S--VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--- 156 (839)
Q Consensus 82 ~--~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d--- 156 (839)
| +++ .+++++.|+.|+||++..... ......+....+..|...|.+++|+| ++.+|++++.+
T Consensus 74 p~~~~~---~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~ 140 (615)
T 1pgu_A 74 PIKGSQ---YLCSGDESGKVIVWGWTFDKE-------SNSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEGRDN 140 (615)
T ss_dssp SSTTCC---EEEEEETTSEEEEEEEEEEGG-------GTEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECCSSC
T ss_pred cCCCCC---EEEEecCCCEEEEEeCCCCcc-------cccccccccchhhcccccEEEEEEeC---CCCEEEEeccCCCC
Confidence 8 873 555556799999999975310 00001467778889999999999999 99999999987
Q ss_pred -CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 157 -NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 157 -~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
+.|++|| .++.+..+..+.. .+.++.+ ++++. ++++++.|+.|++||+.
T Consensus 141 ~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~----------------------- 191 (615)
T 1pgu_A 141 FGVFISWD--SGNSLGEVSGHSQ-RINACHL---KQSRPMRSMTVGDDGSVVFYQGP----------------------- 191 (615)
T ss_dssp SEEEEETT--TCCEEEECCSCSS-CEEEEEE---CSSSSCEEEEEETTTEEEEEETT-----------------------
T ss_pred ccEEEEEE--CCCcceeeecCCc-cEEEEEE---CCCCCcEEEEEeCCCcEEEEeCC-----------------------
Confidence 6888888 5666777665544 4667776 57776 89999999999999988
Q ss_pred eeeEeecccccceeeEEEecCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe-e---c
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-Y---G 306 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~---~ 306 (839)
..+.+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++. .. .+ . .
T Consensus 192 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~-----~~~~~~~~ 251 (615)
T 1pgu_A 192 ----------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----LK-----YIEDDQEP 251 (615)
T ss_dssp ----------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----EE-----ECCBTTBC
T ss_pred ----------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE-----eE-----Eecccccc
Confidence 7788888999999 9999999999 99999999999999999988765 22 34 4 8
Q ss_pred cccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeeccc---CCceEEEEEccCCCEEEEEeCCCcEEEEecCC-c
Q 003208 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI---GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-F 380 (839)
Q Consensus 307 h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~---~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~ 380 (839)
|...|.+++|+ +.++++++.|+.|++||+ +++.+..+..+. ...+.++.+. ++.++++++.||.|++||+.. .
T Consensus 252 ~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 252 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDE 330 (615)
T ss_dssp CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEE
T ss_pred cCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCc
Confidence 99999999995 789999999999999999 688888887762 1257788885 889999999999999999854 2
Q ss_pred CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEee
Q 003208 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ 460 (839)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 460 (839)
.+. ....|...|++++| |+ +++++.+|.+..|++. .+.
T Consensus 331 ~~~------------------------------~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~--------~~~- 368 (615)
T 1pgu_A 331 VLK------------------------------TISGHNKGITALTV-NP--LISGSYDGRIMEWSSS--------SMH- 368 (615)
T ss_dssp EEE------------------------------EECCCSSCEEEEET-TT--TEEEETTSCEEETTTT--------EEE-
T ss_pred EEE------------------------------EEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEch--------hhc-
Confidence 111 22345567999999 87 8888899998755443 122
Q ss_pred ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEE
Q 003208 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT 540 (839)
Q Consensus 461 ~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 540 (839)
..+...+.++++.+ +..+++++.||.+++|++...+... .... .++++++.++++
T Consensus 369 ~~~~~~v~~~~~~~---------~~~l~~~~~d~~i~~~~~~~~~~~~--------------~~~~--~~~s~~~~~~~~ 423 (615)
T 1pgu_A 369 QDHSNLIVSLDNSK---------AQEYSSISWDDTLKVNGITKHEFGS--------------QPKV--ASANNDGFTAVL 423 (615)
T ss_dssp CCCCSCEEEEECCS---------TTCCEEEETTTEEEETTEEEEECSS--------------CEEE--EEECSSSEEEEE
T ss_pred CcccCceEEEEECC---------CcEEEEEeCCCCEEEEEcccCcccC--------------CceE--EEEcCCCCEEEE
Confidence 44467888888722 2688999999999999986643221 1112 568899999998
Q ss_pred eCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecC-CccEEEEecccccccCCCc
Q 003208 541 ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-RGNLVLFPLLRDLLNDKSV 619 (839)
Q Consensus 541 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~-dg~i~iw~~~~~~~~~~~~ 619 (839)
+ .++.+.+|++..... ...+ .|...+++++|+ +++|++|+. ||.|++|++....
T Consensus 424 ~-~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~------ 478 (615)
T 1pgu_A 424 T-NDDDLLILQSFTGDI--------------IKSV--RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE------ 478 (615)
T ss_dssp E-TTSEEEEEETTTCCE--------------EEEE--ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE------
T ss_pred e-CCCceEEEeccCCce--------------eeec--ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc------
Confidence 8 778999999876542 1112 367889999999 899999999 9999999998631
Q ss_pred cceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCc
Q 003208 620 ALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNS 699 (839)
Q Consensus 620 ~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 699 (839)
... ..+. .|. ..|++++|+ +++.+|++++.||.|++|++..++....+. ..+ .+.+..+.|.+..
T Consensus 479 -----~~~-~~~~-~~~-~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h-~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 479 -----VSF-DLKT-PLR-AKPSYISIS---PSETYIAAGDVMGKILLYDLQSREVKTSRW---AFR-TSKINAISWKPAE 543 (615)
T ss_dssp -----EEE-ECSS-CCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEECCS---CCC-SSCEEEEEECCCC
T ss_pred -----ccc-cccC-Ccc-CceEEEEEC---CCCCEEEEcCCCCeEEEeeCCCCcceeEee---cCC-CCceeEEEEcCcc
Confidence 100 1222 344 689999999 889999999999999999998764321111 001 3456666665310
Q ss_pred -----cCcccceEEEeeecccEEEEeccCccEEEEEeeCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccCCCCC
Q 003208 700 -----IDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERK 774 (839)
Q Consensus 700 -----~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (839)
.+.++.+++.|..++.+.+||..+..+.
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------------------------- 576 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI----------------------------------------------- 576 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCC-----------------------------------------------
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCcee-----------------------------------------------
Confidence 1114667888888888888886544210
Q ss_pred ccccCccccCccceEEEEEEeccccccccccccccCCCceEEEeccCCCeEEEEEeec
Q 003208 775 MFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYAV 832 (839)
Q Consensus 775 ~~~~~~~~~~H~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~i~tg~eD~ti~iw~~~~ 832 (839)
.....+|...|++++|+++ +. |+||++|++|++|+++.
T Consensus 577 ----~~~~~~h~~~v~~l~~s~~---------------~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 577 ----IKALNAHKDGVNNLLWETP---------------ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ----EEETTSSTTCEEEEEEEET---------------TE-EEEEETTSCEEEEEEC-
T ss_pred ----chhhhcCccceEEEEEcCC---------------CC-eEEecCCceEEEEeeec
Confidence 0112489999999999965 56 99999999999999875
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.5e-49 Score=490.86 Aligned_cols=621 Identities=13% Similarity=0.154 Sum_probs=447.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ ++++++|+ |+.|+|||+.+++.+.++..|.. .|.+++|+ |+++ .+++++
T Consensus 614 h~~~v~~~~~s--~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~s~~ 676 (1249)
T 3sfz_A 614 HTDAVYHACFS--QD----GQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFS-------SDDS---YIATCS 676 (1249)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred ccccEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCEEEEeccCCC-CEEEEEEe-------cCCC---EEEEEe
Confidence 78999999999 99 88888887 89999999999999999997665 79999999 8884 556666
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|+.|+|||+.+ ++.+..+.+|...|.+++|+|. .++.++++|+.|+.|++||+.+++.+..+.
T Consensus 677 ~d~~v~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 677 ADKKVKIWDSAT---------------GKLVHTYDEHSEQVNCCHFTNK-SNHLLLATGSNDFFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECSS-SSCCEEEEEETTSCEEEEETTSSSEEEEEC
T ss_pred CCCeEEEEECCC---------------CceEEEEcCCCCcEEEEEEecC-CCceEEEEEeCCCeEEEEECCCcchhheec
Confidence 799999999975 5677888999999999999981 134589999999999999999999998887
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc-cceeeEEEe
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH-TAVNLFRLV 253 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 253 (839)
.+.. .+.++.+ ++++.++++++.||.|++||+..++.... ..... .........
T Consensus 741 ~h~~-~v~~~~~---sp~~~~l~s~s~dg~v~vwd~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 795 (1249)
T 3sfz_A 741 GHTN-SVNHCRF---SPDDELLASCSADGTLRLWDVRSANERKS---------------------INVKRFFLSSEDPPE 795 (1249)
T ss_dssp CCSS-CEEEEEE---CSSTTEEEEEESSSEEEEEEGGGTEEEEE---------------------EECCCCC--------
T ss_pred CCCC-CEEEEEE---ecCCCEEEEEECCCeEEEEeCCCCcccce---------------------ecccccccccCCccc
Confidence 6654 3566666 68899999999999999999983221100 00000 000000112
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 331 (839)
.+...|.+++|+|+++.+++++ ++.+.+||+.+... .. ....+|...|.+++|+ +.++++++.|+.|+
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~-----~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL-----LA----EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE-----EE----EEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred cccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCc-----ee----EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 3345789999999999999987 68999999988755 22 2345899999999999 68999999999999
Q ss_pred EEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCcc
Q 003208 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (839)
Q Consensus 332 vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (839)
+|++ ++..+..+.+|.. .|.+++|+|+++++++++.||.|++|++..........
T Consensus 866 vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~----------------------- 921 (1249)
T 3sfz_A 866 LWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV----------------------- 921 (1249)
T ss_dssp EEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSS-----------------------
T ss_pred EEEcCCCceeeecCCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeec-----------------------
Confidence 9999 7888999999998 69999999999999999999999999985311100000
Q ss_pred ceeeccCCCcceEEEEEecCCeEEEE-eccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEE
Q 003208 411 QIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (839)
Q Consensus 411 ~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 489 (839)
......+.+.+++..++. ...+.+..+..... ... ......+.+++++++. .++++
T Consensus 922 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~i~~~~~sp~g--------~~l~~ 978 (1249)
T 3sfz_A 922 --------LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---QID----YLPEAQVSCCCLSPHL--------EYVAF 978 (1249)
T ss_dssp --------EEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---CEE----EECCSCEEEEEECTTS--------SEEEE
T ss_pred --------ccceeeEEEcCCCcEEEEecCCcceEEEecCcc---eEE----EcccCcEEEEEEcCCC--------CEEEE
Confidence 001222334444333333 23333332222111 111 1124567888886654 89999
Q ss_pred eCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCcccee
Q 003208 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (839)
Q Consensus 490 g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 569 (839)
|+.+|.|++|++.++.... ....+...+.. +++++++++|++++.||.|++||+.+...
T Consensus 979 g~~~g~i~i~d~~~~~~~~-------~~~~h~~~v~~--l~~s~dg~~l~s~~~dg~i~vwd~~~~~~------------ 1037 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFS-------SGVGHKKAVRH--IQFTADGKTLISSSEDSVIQVWNWQTGDY------------ 1037 (1249)
T ss_dssp EETTSCCEEEETTTTSCEE-------ECCCCSSCCCC--EEECSSSSCEEEECSSSBEEEEETTTTEE------------
T ss_pred EcCCCCEEEEEcCCCceee-------ecccCCCceEE--EEECCCCCEEEEEcCCCEEEEEECCCCce------------
Confidence 9999999999997754221 11123333333 56899999999999999999999987542
Q ss_pred eeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEecc
Q 003208 570 FLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR 649 (839)
Q Consensus 570 ~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~ 649 (839)
.....|...|++++++|++ .+++++.||.|++||+.... ....+. .|. ..|++++|+
T Consensus 1038 ----~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-------------~~~~~~-~~~-~~v~~~~~s--- 1094 (1249)
T 3sfz_A 1038 ----VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR-------------IERDFT-CHQ-GTVLSCAIS--- 1094 (1249)
T ss_dssp ----ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTC-------------CCEEEE-CCS-SCCCCEEEC---
T ss_pred ----EEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCc-------------eeEEEc-ccC-CcEEEEEEC---
Confidence 1223688999999999965 56789999999999998531 233333 444 679999999
Q ss_pred CCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEeeecccEEEEeccCccEEEE
Q 003208 650 SNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQ 729 (839)
Q Consensus 650 ~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~ 729 (839)
+++.+|++++.||.|++|++..+....... .+ .+.+..+.|. +++.+++.|..++.+.+||..+.+.+..
T Consensus 1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~----~h-~~~v~~~~~s-----~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELK----GH-NGCVRCSAFS-----LDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp SSSSSCEEECCSSCCCEECSSSSSCSBCCC----CC-SSCEEEEEEC-----SSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred CCCCEEEEEcCCCcEEEEECCCcceeeeec----cC-CCcEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence 888999999999999999998765321111 11 3446666664 3467899999999999999988776544
Q ss_pred Ee--------eCCCCcceeeccCCccCceeEEEEEeccEEEEEeecccCCCCCccccCccccCccceEEEEEEecccccc
Q 003208 730 IP--------CGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQV 801 (839)
Q Consensus 730 ~~--------cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~i~~v~~~~~~~~~ 801 (839)
.. -+......++. ..+++..++.. ++.+++|+..... ......+|+..|++++|+++
T Consensus 1165 ~~~~~~~~~~~~~~~~v~~l~---fs~dg~~l~s~-~g~v~vwd~~~g~-------~~~~~~~~~~~i~~~~~s~d---- 1229 (1249)
T 3sfz_A 1165 CAPISVEEGTATHGGWVTDVC---FSPDSKTLVSA-GGYLKWWNVATGD-------SSQTFYTNGTNLKKIHVSPD---- 1229 (1249)
T ss_dssp CCCCC-------CCSCCCEEE---ECTTSSCEEEE-SSSEEEBCSSSCB-------CCCCCCCSSCCCCCCEECSS----
T ss_pred eccccccccccccCceEEEEE---ECCCCCEEEEC-CCeEEEEECCCCc-------eeeeeeccCCcccEEEECCC----
Confidence 30 11111122222 12223344444 4889999863211 12334679999999999965
Q ss_pred ccccccccCCCceEEEeccCCCeEEEEEee
Q 003208 802 GANVKKSALNKSSWIATGCEDGTVRLTRYA 831 (839)
Q Consensus 802 ~~~~~~~~~~~~~~i~tg~eD~ti~iw~~~ 831 (839)
+.+|++|++|++|++|++.
T Consensus 1230 -----------g~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1230 -----------FRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -----------SCCEEEECTTCCEEEECCC
T ss_pred -----------CCEEEEecCCcEEEEEeec
Confidence 6799999999999999864
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-48 Score=444.87 Aligned_cols=518 Identities=16% Similarity=0.181 Sum_probs=392.9
Q ss_pred CcCccccccCCC----c-------eeee-eeEEEEecCC--CCCCCcceEEEee-CCeeEEEECCCC--------eeeeE
Q 003208 3 KKDLSEWRLDVG----Q-------YLGE-ISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAG--------TLIRP 59 (839)
Q Consensus 3 d~~i~~w~~~~~----~-------~~~~-Vt~l~f~~~~--~~~~~~~~l~~g~-~~~v~iwd~~~~--------~~~~~ 59 (839)
|+.+++|++.++ + |.++ |++++|+ | + +++|++|+ |+.|+|||+.++ +.+..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--p~~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS--PIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC--SSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEEC--cCCC----CCEEEEecCCCEEEEEeCCCCcccccccccccch
Confidence 678999999987 3 7788 9999999 9 8 88999888 899999999755 56666
Q ss_pred EeeecCceEEeEEecccccccCCCccceeeEEEEEcC----cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce
Q 003208 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (839)
Q Consensus 60 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (839)
+..+.. +|.+++|+ |+++ .+++++.+ +.|++|+. .+.+..+.+|...|
T Consensus 112 ~~~~~~-~v~~~~~s-------~~~~---~l~~~~~~~~~~~~v~~~d~-----------------~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 112 FQVLAG-PISDISWD-------FEGR---RLCVVGEGRDNFGVFISWDS-----------------GNSLGEVSGHSQRI 163 (615)
T ss_dssp EECCSS-CEEEEEEC-------TTSS---EEEEEECCSSCSEEEEETTT-----------------CCEEEECCSCSSCE
T ss_pred hhcccc-cEEEEEEe-------CCCC---EEEEeccCCCCccEEEEEEC-----------------CCcceeeecCCccE
Confidence 766554 79999999 8883 44445545 68888872 35677888999999
Q ss_pred EEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCc--eeEEEEeeccCCcc-ceEEEEeecCCeEEEEEee
Q 003208 136 FDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPER--CLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 136 ~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~-~~~l~sg~~dg~i~vw~~~ 211 (839)
.+++|+| ++. ++++++.|+.|++||+.+++.+..+..+.. ..+.++.+ +++ +.+|++++.||.|++||+.
T Consensus 164 ~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 164 NACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE---CSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEEECC---CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE---CCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 887 899999999999999999999888876554 14666766 678 8999999999999999998
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-e---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
..+.+..+ . +|...|.+++|+ ++++|++++.|+.|++||+.+
T Consensus 238 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 238 ---------------------------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ---------------------------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred ---------------------------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence 66777777 5 899999999999 999999999999999999987
Q ss_pred CccCCCCCceeeeceEeecc----ccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC
Q 003208 288 EYWKDSDSIEEVGSSVLYGH----NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
.+. .. .+..+ ...+.++.|. ++++++++.|+.|++||+ .++.+..+..|.. +|.+++| |+
T Consensus 284 ~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~-- 349 (615)
T 1pgu_A 284 SKC-----VQ-----KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP-- 349 (615)
T ss_dssp TEE-----EE-----EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT--
T ss_pred CcE-----EE-----EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC-CEEEEEe-cC--
Confidence 654 22 33333 4678888886 899999999999999999 6788889999988 7999999 87
Q ss_pred EEEEEeCCCcEEEEecCCcCccCcCCCCc---ccccCCCcceEEeecCCCccceeeccCC----CcceEEEEEecCCeEE
Q 003208 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPE---AKEFNGRTEIFSIKIPNFSEQIRLTDSK----SEYVRCLHLTSEDTLY 434 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~ 434 (839)
+++++.||.|++|++. .+. ..|.. .+.+.+...+.... ..+.+..++.. ...+.+++++|++.++
T Consensus 350 -l~~~~~dg~i~~w~~~--~~~--~~~~~~v~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 350 -LISGSYDGRIMEWSSS--SMH--QDHSNLIVSLDNSKAQEYSSIS---WDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp -TEEEETTSCEEETTTT--EEE--CCCCSCEEEEECCSTTCCEEEE---TTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred -cEEECCCCeEEEEEch--hhc--CcccCceEEEEECCCcEEEEEe---CCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 9999999999999986 121 22221 12221111111111 01112222111 1147788888888888
Q ss_pred EEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCC-CccEEEEEEcCCCCCCcceee
Q 003208 435 IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDG-KGNMTIVRVVGDVHTPQLSFT 513 (839)
Q Consensus 435 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~l~~~~~~~~~~~~~~~ 513 (839)
+.+.++.+..+++.... .+.......++.++++. +.++++++. ||.|++|++.++....
T Consensus 422 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----------~~~l~~~~~~d~~i~~~~~~~~~~~~----- 481 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGD-----IIKSVRLNSPGSAVSLS----------QNYVAVGLEEGNTIQVFKLSDLEVSF----- 481 (615)
T ss_dssp EEETTSEEEEEETTTCC-----EEEEEECSSCEEEEEEC----------SSEEEEEETTTSCEEEEETTEEEEEE-----
T ss_pred EEeCCCceEEEeccCCc-----eeeecccCCCceEEEEc----------CCEEEEeecCCCeEEEEECCCccccc-----
Confidence 87777777766653332 22222345677777775 278999999 9999999987643210
Q ss_pred eEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeec---
Q 003208 514 FTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF--- 590 (839)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--- 590 (839)
.....+...+.. ++++|++++|++++.||.|++||+.+.+. ...+...|...|++++|+|
T Consensus 482 -~~~~~~~~~v~~--~~~s~~g~~l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 482 -DLKTPLRAKPSY--ISISPSETYIAAGDVMGKILLYDLQSREV--------------KTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp -ECSSCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTTEE--------------EECCSCCCSSCEEEEEECCCC-
T ss_pred -cccCCccCceEE--EEECCCCCEEEEcCCCCeEEEeeCCCCcc--------------eeEeecCCCCceeEEEEcCccc
Confidence 111223344444 67899999999999999999999987642 1222223899999999999
Q ss_pred -------CCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCc
Q 003208 591 -------EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGC 663 (839)
Q Consensus 591 -------~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~ 663 (839)
++++||+|+.||.|++|++.... .++..+. .|. ..|++|+|+ +++. |++++.||.
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~-~h~-~~v~~l~~s---~~~~-l~s~~~d~~ 606 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPM------------KIIKALN-AHK-DGVNNLLWE---TPST-LVSSGADAC 606 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTT------------CCEEETT-SST-TCEEEEEEE---ETTE-EEEEETTSC
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCc------------eechhhh-cCc-cceEEEEEc---CCCC-eEEecCCce
Confidence 99999999999999999998521 1233333 454 789999999 7778 999999999
Q ss_pred EEEEEEec
Q 003208 664 ICYLEYDK 671 (839)
Q Consensus 664 i~iw~~~~ 671 (839)
|++|+++.
T Consensus 607 v~iw~~~~ 614 (615)
T 1pgu_A 607 IKRWNVVL 614 (615)
T ss_dssp EEEEEEC-
T ss_pred EEEEeeec
Confidence 99999875
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-48 Score=484.31 Aligned_cols=554 Identities=14% Similarity=0.192 Sum_probs=417.0
Q ss_pred CCCcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+.|++|++||+.+++ |.++|++++|+ |+ ++++++|+ |+.|+|||+.+++.+.++..+.. .|.+++
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s--~~----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~ 706 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS--SD----DSYIATCSADKKVKIWDSATGKLVHTYDEHSE-QVNCCH 706 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEE
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEe--cC----CCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEE
Confidence 368999999999875 77899999999 99 78888887 89999999999999999997655 699999
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
|+ |++.. ..+++++.|+.|++||+.. .+.+..+.+|.+.|++++|+| ++++|++
T Consensus 707 ~~-------~~~~~-~~l~sg~~d~~v~vwd~~~---------------~~~~~~~~~h~~~v~~~~~sp---~~~~l~s 760 (1249)
T 3sfz_A 707 FT-------NKSNH-LLLATGSNDFFLKLWDLNQ---------------KECRNTMFGHTNSVNHCRFSP---DDELLAS 760 (1249)
T ss_dssp EC-------SSSSC-CEEEEEETTSCEEEEETTS---------------SSEEEEECCCSSCEEEEEECS---STTEEEE
T ss_pred Ee-------cCCCc-eEEEEEeCCCeEEEEECCC---------------cchhheecCCCCCEEEEEEec---CCCEEEE
Confidence 99 53210 0344445689999999975 456778889999999999999 9999999
Q ss_pred EeCCCcEEEEecCCCceEEEEecCC------------ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCC-
Q 003208 153 GCSDNSIRVWDISNSSIILEVHSPE------------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL- 219 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~~~~~~~------------~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~- 219 (839)
++.|+.|++||+.+++....+.... ...+.++.+ ++++..+++++ ++.+.+|++..+......
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW---SADGDKIIVAA-KNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB---CTTSSEEEEEE-TTEEEEEETTTCCEEEEEE
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE---CCCCCEEEEEc-CCcEEEEEecCCCceeEEc
Confidence 9999999999999988776654221 112233333 68888888876 689999998765533211
Q ss_pred ----C--CCCCccCCCCCC----CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 220 ----N--SPEGNHAHGSSS----DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 220 ----~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
. ....+++++... .++.+++|+.. ....+..+.+|.+.|.+++|+|++++|++++.|+.|++|++....
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID-SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence 1 112223333322 67789999987 677888899999999999999999999999999999999986532
Q ss_pred cCCCCCce------------------------eee---ceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCce
Q 003208 290 WKDSDSIE------------------------EVG---SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQ 339 (839)
Q Consensus 290 ~~~~~~~~------------------------~~~---~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~ 339 (839)
........ ... ......+...+.+++|+ ++++++|+.||.|++|++ +++.
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence 21000000 000 00112235578899998 689999999999999999 7888
Q ss_pred EEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCC
Q 003208 340 LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419 (839)
Q Consensus 340 ~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (839)
...+.+|.. .|.+++|+|++++|++++.||.|++|++....... ...+.
T Consensus 996 ~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~------------------------------~~~~~ 1044 (1249)
T 3sfz_A 996 FSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF------------------------------LQAHQ 1044 (1249)
T ss_dssp EEECCCCSS-CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC------------------------------CBCCS
T ss_pred eeecccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE------------------------------EecCC
Confidence 888999988 69999999999999999999999999996532111 12344
Q ss_pred cceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEE
Q 003208 420 EYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (839)
Q Consensus 420 ~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~ 499 (839)
..|.++++++++.+++++.+|.+..|++...... ..+..+ ...+.+++++++. .++++++.||.|++|
T Consensus 1045 ~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~---~~~~~~-~~~v~~~~~s~d~--------~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE---RDFTCH-QGTVLSCAISSDA--------TKFSSTSADKTAKIW 1112 (1249)
T ss_dssp SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC---EEEECC-SSCCCCEEECSSS--------SSCEEECCSSCCCEE
T ss_pred CcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee---EEEccc-CCcEEEEEECCCC--------CEEEEEcCCCcEEEE
Confidence 6799999999999999999999988877654332 233333 5567778776654 789999999999999
Q ss_pred EEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeecccccc
Q 003208 500 RVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCF 579 (839)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h 579 (839)
++.++...... ..+...+.. .+++|++++|++|+.||.|++||+.++....... .... ......|
T Consensus 1113 d~~~~~~~~~l-------~~h~~~v~~--~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~-----~~~~-~~~~~~~ 1177 (1249)
T 3sfz_A 1113 SFDLLSPLHEL-------KGHNGCVRC--SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA-----PISV-EEGTATH 1177 (1249)
T ss_dssp CSSSSSCSBCC-------CCCSSCEEE--EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC-----CCC--------C
T ss_pred ECCCcceeeee-------ccCCCcEEE--EEECCCCCEEEEEeCCCEEEEEECCCCceEEEec-----cccc-ccccccc
Confidence 99776533221 123333434 5689999999999999999999998765321110 0000 0111368
Q ss_pred CceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeec
Q 003208 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTG 659 (839)
Q Consensus 580 ~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~ 659 (839)
...|++++|+||+++|++++ |.|++|++..+. ....+. .|. ..|+++.|+ +++.+|++++
T Consensus 1178 ~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~-------------~~~~~~-~~~-~~i~~~~~s---~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1178 GGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD-------------SSQTFY-TNG-TNLKKIHVS---PDFRTYVTVD 1237 (1249)
T ss_dssp CSCCCEEEECTTSSCEEEES--SSEEEBCSSSCB-------------CCCCCC-CSS-CCCCCCEEC---SSSCCEEEEC
T ss_pred CceEEEEEECCCCCEEEECC--CeEEEEECCCCc-------------eeeeee-ccC-CcccEEEEC---CCCCEEEEec
Confidence 89999999999999999986 899999998532 122222 343 679999999 8889999999
Q ss_pred CcCcEEEEEEe
Q 003208 660 GDGCICYLEYD 670 (839)
Q Consensus 660 ~Dg~i~iw~~~ 670 (839)
.||.+++|++.
T Consensus 1238 ~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1238 NLGILYILQVL 1248 (1249)
T ss_dssp TTCCEEEECCC
T ss_pred CCcEEEEEeec
Confidence 99999999863
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-46 Score=445.23 Aligned_cols=516 Identities=10% Similarity=0.046 Sum_probs=341.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|+||+|+ |+ +++|++|+ |+.|+|||..+++.+..+. +..+|.+++|+ | |+ .+++++
T Consensus 16 h~~~V~~lafs--pd----g~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fs-------p-g~---~L~S~s 76 (902)
T 2oaj_A 16 MSSKPIAAAFD--FT----QNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFV-------K-GI---YLVVIN 76 (902)
T ss_dssp CSSCEEEEEEE--TT----TTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEE-------T-TT---EEEEEE
T ss_pred CCCCcEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEc-------C-CC---EEEEEE
Confidence 77899999999 99 88999988 8999999998877655543 34479999999 7 52 577777
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE-EE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-EV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~-~~ 173 (839)
.|++|+|||+.. .+.+..+. |.+.|++++|+| ++++|++|+.||.|++||+.+++... .+
T Consensus 77 ~D~~v~lWd~~~---------------~~~~~~~~-~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 77 AKDTVYVLSLYS---------------QKVLTTVF-VPGKITSIDTDA---SLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp TTCEEEEEETTT---------------CSEEEEEE-CSSCEEEEECCT---TCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred CcCeEEEEECCC---------------CcEEEEEc-CCCCEEEEEECC---CCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 899999999975 33455554 668999999999 99999999999999999999877531 11
Q ss_pred -------e--cCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 174 -------H--SPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 174 -------~--~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
. ......+.++.| +| ++..+++|+.||.| +||++
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~---sp~~~~~l~~g~~dg~v-lWd~~-------------------------------- 181 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQW---NPRDIGTVLISYEYVTL-TYSLV-------------------------------- 181 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEE---ETTEEEEEEEECSSCEE-EEETT--------------------------------
T ss_pred ccccccccccccCCCCeEEEEE---ccCCCCEEEEEeCCCcE-EEECC--------------------------------
Confidence 0 112234556666 35 45789999999999 99998
Q ss_pred ccceeeEEEec------------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 244 HTAVNLFRLVG------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 244 ~~~~~~~~~~~------------------h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
..+.+..+.+ |...|.+++|+|++++|++++.|++|++||+++++. +.........
T Consensus 182 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~-----~~~r~l~~~~ 255 (902)
T 2oaj_A 182 -ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM-----IMARTVFETE 255 (902)
T ss_dssp -TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE-----EEEECSSCSC
T ss_pred -CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-----EEEEeecccc
Confidence 4444444443 468899999999999999999999999999988654 2110000001
Q ss_pred -------------ccccceEEeEEC----C---CEEEEEeCC-----CeEEEEcCC-------------------CceEE
Q 003208 306 -------------GHNARVWDCCLT----D---SFIITAGED-----CTCRVWGSD-------------------GKQLK 341 (839)
Q Consensus 306 -------------~h~~~v~~~~~~----~---~~l~s~~~d-----g~i~vw~~~-------------------~~~~~ 341 (839)
.|...|.+++|+ + .++++|+.| ..+++|++. .+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 335 (902)
T 2oaj_A 256 INVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMK 335 (902)
T ss_dssp TTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEE
T ss_pred cCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceE
Confidence 245689999994 2 467777776 378888841 12333
Q ss_pred Eee-cccCCceEEEEEcc----------CCCEEEEEeCCCcEEEEecCCc-Ccc-CcCCCCcccccCCCcceEEeecCCC
Q 003208 342 MIK-EHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQAF-LPG-SLESHPEAKEFNGRTEIFSIKIPNF 408 (839)
Q Consensus 342 ~~~-~h~~~~i~~~~~~~----------~~~~l~t~~~dg~i~iw~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (839)
.+. .+.. .|..+.+.+ +...+++++.||.|++|++... ... ....
T Consensus 336 ~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~--------------------- 393 (902)
T 2oaj_A 336 IFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF--------------------- 393 (902)
T ss_dssp EECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS---------------------
T ss_pred EEecCCCC-ceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccC---------------------
Confidence 443 2344 588888755 3447899999999999998431 110 0000
Q ss_pred ccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEE
Q 003208 409 SEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (839)
Q Consensus 409 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 487 (839)
...+..+...|++++|++... +..+..+. .....| .+.++. ..+..++++ ++++++
T Consensus 394 ---~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~---------~~~~~~--~l~G~~-~~v~sv~~s--------pdg~~l 450 (902)
T 2oaj_A 394 ---PQNLSWLRPLATTSMAASVPNKLWLGALSA---------AQNKDY--LLKGGV-RTKRQKLPA--------EYGTAF 450 (902)
T ss_dssp ---CGGGTTBTTBEEEEEEEEEEHHHHHHHHHT---------TBCCCC--SCCCSB-CCCCCCCCC--------SEEEEE
T ss_pred ---CCcccccCCCeeEEEEEEcCHHHHHHHHhc---------ccCCCC--cccCCc-CCCCccccc--------ccCcEE
Confidence 011223335688888764210 00000000 000111 122221 122223333 355899
Q ss_pred EEeCCCccEEEEEEcCCCCCCcceeeeEee----ccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCccc---
Q 003208 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWS----AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC--- 560 (839)
Q Consensus 488 ~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~--- 560 (839)
++|+.||+|++||+.++.......+..... ..+...+.. ++++|++++||+|+.||+|++|++...+....
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s--vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~ 528 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK--ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE--EEEETTTTEEEEEETTSCEEEEEEEECCC------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE--EEecCCCCeEEEEecCcEEEEEEecCccccCcccc
Confidence 999999999999998875332111111100 023334444 67999999999999999999999986531000
Q ss_pred -------cc-----C----------------CccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccc
Q 003208 561 -------YE-----S----------------SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 561 -------~~-----~----------------~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
.. . .-...+.+... ..+|...|++++||||| +||+|+.|++|+|||+...
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 529 PESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ---------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred CCCcccceeeeeccccCCccccccccccCCCCCCCccceeEE-EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 00 0 00000111122 23699999999999999 9999999999999998753
Q ss_pred cccCCCccceeecCcceeeecccCCCceeEEEEE-----eccCCceEEEeecCcCcEEEEEE
Q 003208 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA-----KLRSNQTEIRSTGGDGCICYLEY 669 (839)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~-----~~~~~~~~l~s~~~Dg~i~iw~~ 669 (839)
. .... ..+..+...|. ..|++|+|+ +..+++.+|++++.||+|++|++
T Consensus 607 ~-------~~~~-~~~~~~~~gh~-~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 607 A-------IIYM-ENIREISGAQS-ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp E-------EEEE-EEGGGTCSSCC-CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred e-------EEEE-eehhHhccccc-cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 1 0000 01111111344 679999999 54444689999999999999999
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-42 Score=406.40 Aligned_cols=629 Identities=10% Similarity=0.015 Sum_probs=382.8
Q ss_pred CCCcCccccccCCCc------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEe
Q 003208 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 73 (839)
+.|++|++|+....+ |..+|++|+|+ |+ ++|++++ |+.|+|||+.+++.+.++. ++ ..|.+++|
T Consensus 36 s~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fs--pg-----~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~-~~V~~v~~ 106 (902)
T 2oaj_A 36 TVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFV--KG-----IYLVVINAKDTVYVLSLYSQKVLTTVF-VP-GKITSIDT 106 (902)
T ss_dssp ETTSEEEEECSTTCEEEEECSSCCCEEEEEEE--TT-----TEEEEEETTCEEEEEETTTCSEEEEEE-CS-SCEEEEEC
T ss_pred eCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEc--CC-----CEEEEEECcCeEEEEECCCCcEEEEEc-CC-CCEEEEEE
Confidence 368999999987754 56789999999 75 4777766 9999999999999988886 34 36999999
Q ss_pred cccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceee--e-------EeccCCCcceEEEEEeecc
Q 003208 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL--V-------QSLPRLSHWVFDVCFLKVC 144 (839)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~h~~~I~~~~~~~~~ 144 (839)
+ |+++ .+++++.|+.|++||+.... ... + ..+.+|.++|++++|+|
T Consensus 107 s-------p~g~---~l~sgs~dg~V~lwd~~~~~-------------~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp-- 161 (902)
T 2oaj_A 107 D-------ASLD---WMLIGLQNGSMIVYDIDRDQ-------------LSSFKLDNLQKSSFFPAARLSPIVSIQWNP-- 161 (902)
T ss_dssp C-------TTCS---EEEEEETTSCEEEEETTTTE-------------EEEEEECCHHHHHTCSSSCCCCCCEEEEET--
T ss_pred C-------CCCC---EEEEEcCCCcEEEEECCCCc-------------cccceeccccccccccccCCCCeEEEEEcc--
Confidence 9 8874 56666779999999997532 110 0 34578999999999999
Q ss_pred CC-CcEEEEEeCCCcEEEEecCCCceEEEEecC-----------------CceeEEEEeeccCCccceEEEEeecCCeEE
Q 003208 145 NG-NRSLAIGCSDNSIRVWDISNSSIILEVHSP-----------------ERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (839)
Q Consensus 145 ~~-~~~las~~~d~~i~vwd~~~~~~~~~~~~~-----------------~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~ 206 (839)
+ +..|++|+.|+.| +||+.+++.+..+..+ ....+.++.| +|++.+|++|+.||.|+
T Consensus 162 -~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f---spdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 162 -RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY---HPNSLHIITIHEDNSLV 236 (902)
T ss_dssp -TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE---CTTSSEEEEEETTCCEE
T ss_pred -CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE---cCCCCEEEEEECCCeEE
Confidence 6 4689999999999 9999999888877644 1244777777 68899999999999999
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE--E---e-------------cCCCCeEEEEEc---
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR--L---V-------------GHEGSIFRIEWS--- 265 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-------------~h~~~V~~l~~~--- 265 (839)
+||++.+ +++.. + . .|...|++++|+
T Consensus 237 lWd~~~g---------------------------------~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 237 FWDANSG---------------------------------HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp EEETTTC---------------------------------CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred EEECCCC---------------------------------cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 9999732 22211 1 1 245689999995
Q ss_pred -CCC-CEEEEEeCC-----CcEEEEEcccCccCCCC----------CceeeeceEe-eccccceEEeEEC----------
Q 003208 266 -SCG-SKLVSVSDD-----RSARIWEVRAEYWKDSD----------SIEEVGSSVL-YGHNARVWDCCLT---------- 317 (839)
Q Consensus 266 -~~~-~~l~s~s~d-----~~i~iwd~~~~~~~~~~----------~~~~~~~~~~-~~h~~~v~~~~~~---------- 317 (839)
|++ ..+++++.| ..+++|++......... ..+.. ..+ ..|...|.++.+.
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM--KIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE--EEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce--EEEecCCCCceEEEEECCCCCCCcCCC
Confidence 443 467777776 37899985321000000 00000 122 2456777777753
Q ss_pred --CCEEEEEeCCCeEEEEcC-CCceEEE-------eecccCCceE----------------------------------E
Q 003208 318 --DSFIITAGEDCTCRVWGS-DGKQLKM-------IKEHIGRGIW----------------------------------R 353 (839)
Q Consensus 318 --~~~l~s~~~dg~i~vw~~-~~~~~~~-------~~~h~~~~i~----------------------------------~ 353 (839)
+..+++++.|+.|++|++ ++..... +..|.. .|+ +
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~-~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~s 440 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP-LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQ 440 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT-BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC-CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCc
Confidence 237899999999999998 5543322 222222 344 4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeE
Q 003208 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL 433 (839)
Q Consensus 354 ~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 433 (839)
++|+|++++|++|+.|++|++||+....+... ..+.+... + ....+|...|.+++|+|++.+
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-------------~~~~~~l~---~--~~~~~h~~~V~svafspdg~~ 502 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-------------ASFEVNLS---R--TLNKAKELAVDKISFAAETLE 502 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-------------BCEEEEHH---H--HTTCSSSCCEEEEEEETTTTE
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCC-------------ceEEeech---h--hcCCCCCCceeEEEecCCCCe
Confidence 45578899999999999999999965432210 11111100 0 001245678999999999855
Q ss_pred E-EEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCccee
Q 003208 434 Y-IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF 512 (839)
Q Consensus 434 ~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~ 512 (839)
+ +++.+|.+.+|++.......- ......... .+++..-. ....+.....++...+..+ ....+.
T Consensus 503 LAsgs~DgtV~lwd~~~~~~~~~-~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~g~~~ 567 (902)
T 2oaj_A 503 LAVSIETGDVVLFKYEVNQFYSV-ENRPESGDL---EMNFRRFS-LNNTNGVLVDVRDRAPTGV----------RQGFMP 567 (902)
T ss_dssp EEEEETTSCEEEEEEEECCC-------------------CCSCC-GGGSSCSEEECGGGCCTTC----------SEEEEE
T ss_pred EEEEecCcEEEEEEecCccccCc-cccCCCccc---ceeeeecc-ccCCccccccccccCCCCC----------CCccce
Confidence 4 556788888887654321000 000000000 01100000 0000111111111111110 000110
Q ss_pred eeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeee---
Q 003208 513 TFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS--- 589 (839)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s--- 589 (839)
......+...+.. ++++|+| +||+|+.|++|++||++...... ...+ ..+..+|...|++++||
T Consensus 568 -~~~l~~h~~~V~s--vafSpdG-~lAsgs~D~tv~lwd~~~~~~~~--------~~~~-~~~~~gh~~~V~sv~Fs~~~ 634 (902)
T 2oaj_A 568 -STAVHANKGKTSA--INNSNIG-FVGIAYAAGSLMLIDRRGPAIIY--------MENI-REISGAQSACVTCIEFVIME 634 (902)
T ss_dssp -EEEECCCSCSEEE--EEECBTS-EEEEEETTSEEEEEETTTTEEEE--------EEEG-GGTCSSCCCCEEEEEEEEEE
T ss_pred -eEEEEcCCCcEEE--EEecCCc-EEEEEeCCCcEEEEECCCCeEEE--------Eeeh-hHhccccccceEEEEEEEEe
Confidence 1111223444444 5699999 99999999999999987543100 0001 12223789999999999
Q ss_pred --cCC---CEEEEecCCccEEEEecccccccCCCccceeecCcceeeeccc---CCCceeEEE-EEec------------
Q 003208 590 --FED---EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAH---GISTVSTLS-VAKL------------ 648 (839)
Q Consensus 590 --~~~---~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~~Vt~i~-~~~~------------ 648 (839)
||| ++|++|+.||+|++|++.... .......+.++. .++.|.+|. |+..
T Consensus 635 ~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~----------~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~ 704 (902)
T 2oaj_A 635 YGDDGYSSILMVCGTDMGEVITYKILPAS----------GGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKM 704 (902)
T ss_dssp CTTSSSEEEEEEEEETTSEEEEEEEEECG----------GGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHH
T ss_pred cCCCCCcceEEEEEecCCcEEEEEEecCC----------CCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHH
Confidence 885 899999999999999993210 000112222211 125677776 4310
Q ss_pred -------cCCceEEEeecCcCcEEEEEEecCCceeeEeeeeeeeeeeeEEEE---e-ecCCccCcccceEEEeeecccEE
Q 003208 649 -------RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV---S-AENNSIDLASCNYAAGFASTDFI 717 (839)
Q Consensus 649 -------~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~---~-~~~~~~~~~~~~~~~g~~~~~~~ 717 (839)
..++. ++.++ |..+|+|++..++..- + . ......+..+ . ........++..++.++.++.+.
T Consensus 705 ~~l~~~~~~~~~-~l~~~-~~~ir~~~~~~~k~~~--k--~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~ 777 (902)
T 2oaj_A 705 QNLSKGLCIPGI-VLITG-FDDIRLITLGKSKSTH--K--G-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLR 777 (902)
T ss_dssp HGGGGTCCCCEE-EEEEC-SSEEEEECTTCCCEEE--E--E-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEE
T ss_pred hccCCCCCCCeE-EEEEe-ccceEEEeCcccccee--e--E-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEE
Confidence 03333 44444 7789999998754321 1 1 1111222222 1 01111233466789999999999
Q ss_pred EEeccCccEEEEEeeCCCCcceeeccCCccCceeEEEEEeccEEEEEeec
Q 003208 718 IWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHW 767 (839)
Q Consensus 718 ~w~~~~~~~~~~~~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (839)
+|+..+-+++.+..|-..-..-..........+..|.+.....+.++.-+
T Consensus 778 ~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~~~~~~~ 827 (902)
T 2oaj_A 778 VFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQASLFSTV 827 (902)
T ss_dssp EEETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECSSSEEEEEEEE
T ss_pred EEECcchHHHhhccCCcccccccccceEEcCCCCEEEEeChhheEEEEEE
Confidence 99999999999998743221111111112344557777777666666654
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-39 Score=388.95 Aligned_cols=462 Identities=14% Similarity=0.209 Sum_probs=345.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ +++|++|. +|.|+|||+.+++.+.++..+.. +|.+++|+ |+++ .+++++
T Consensus 12 h~~~v~~i~~s--p~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s-------~~~~---~l~~~~ 74 (814)
T 3mkq_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFI-------ARKN---WIIVGS 74 (814)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------GGGT---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEe-------CCCC---EEEEEe
Confidence 78899999999 99 88888888 89999999999999999997655 79999999 8874 556666
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-ceEEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-~~~~~~ 173 (839)
.|+.|+||++.. ++.+..+.+|.+.|++++|+| ++.+|++++.|+.|++||+.++ .....+
T Consensus 75 ~dg~i~vw~~~~---------------~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 136 (814)
T 3mkq_A 75 DDFRIRVFNYNT---------------GEKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (814)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred CCCeEEEEECCC---------------CcEEEEEecCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence 799999999975 456778889999999999999 9999999999999999999887 445555
Q ss_pred ecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
..+. ..+.++.+ +| ++..+++++.||.|++||+. .......+
T Consensus 137 ~~~~-~~v~~~~~---~p~~~~~l~~~~~dg~v~vwd~~---------------------------------~~~~~~~~ 179 (814)
T 3mkq_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (814)
T ss_dssp ECCS-SCEEEEEE---ETTEEEEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cCCC-CcEEEEEE---EcCCCCEEEEEeCCCeEEEEECC---------------------------------CCcceeEE
Confidence 5443 34556666 46 78899999999999999987 44445555
Q ss_pred ecC-CCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC
Q 003208 253 VGH-EGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (839)
Q Consensus 253 ~~h-~~~V~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d 327 (839)
..| ...|.+++|+| ++++|++++.|+.|++||+.++.. . ..+.+|...|.+++|+ +.++++++.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----V-----ATLEGHMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE-----E-----EEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-----E-----EEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 544 48999999999 999999999999999999987654 2 2677899999999999 5799999999
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCE-EEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeec
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (839)
|.|++||+ +++.+..+..|.. .+++++|+|++.. +++++.|+.+.+|++...
T Consensus 250 g~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 303 (814)
T 3mkq_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGFTVLSLGND------------------------- 303 (814)
T ss_dssp SCEEEEETTTCSEEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEEEEEECSCC-------------------------
T ss_pred CeEEEEECCCCcEEEEeecCCC-cEEEEEEccCCCceEEEEEeCCCEEEEEcCCC-------------------------
Confidence 99999999 7888999988887 6999999999863 344455777889987431
Q ss_pred CCCccceeeccCCCcceEEEEEecCCeEEEEeccc----eEEEEEec------CCCCceeEEEeeecCCCceEEeeecCC
Q 003208 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG----YLYHTKLC------DMDSVNWNKILQVSEGMPIICMDLLSN 475 (839)
Q Consensus 406 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g----~i~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 475 (839)
...+.++|++.+++..... .++...+. ..................+.+++++++
T Consensus 304 ----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 367 (814)
T 3mkq_A 304 ----------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN 367 (814)
T ss_dssp ----------------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT
T ss_pred ----------------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCC
Confidence 1233455566555543211 11111110 000000000111222345666777655
Q ss_pred CCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCC
Q 003208 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (839)
Q Consensus 476 ~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~ 555 (839)
+ +++++++ +|.+.+|++..... . ....+.. ++++|+++++++++.+|.|++|+.-
T Consensus 368 g--------~~la~~~-~~~~~i~~~~~~~~------~------~~~~i~~--~~~spdg~~la~~~~~g~v~l~~~~-- 422 (814)
T 3mkq_A 368 G--------RFVTVVG-DGEYVIYTALAWRN------K------AFGKCQD--FVWGPDSNSYALIDETGQIKYYKNF-- 422 (814)
T ss_dssp S--------SEEEEEE-TTEEEEEETTTTEE------E------EEEECSE--EEECTTSSCEEEECTTCCEEEEETT--
T ss_pred C--------CEEEEec-CCEEEEEECccccc------c------CCCceEE--EEEeCCCCeEEEEeCCCcEEEEECC--
Confidence 3 7888887 89999998643210 0 1122222 6789999999999999999999632
Q ss_pred CCcccccCCccceeeeeeccccccCceEEEEeeecCC---CEEEEecCCccEEEEecccccccCCCccceeecCcceeee
Q 003208 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED---EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK 632 (839)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (839)
.+|...|.+++|+|++ ++|++++.|+.|++||+.... .+..+.
T Consensus 423 ---------------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-------------~~~~~~ 468 (814)
T 3mkq_A 423 ---------------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-------------LVRRID 468 (814)
T ss_dssp ---------------------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-------------EEEEES
T ss_pred ---------------------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-------------EEEEEe
Confidence 1356668899999998 688899999999999998531 222222
Q ss_pred cccCCCceeEEEEEeccCCceEEEee------cCcCcEEEEE
Q 003208 633 GAHGISTVSTLSVAKLRSNQTEIRST------GGDGCICYLE 668 (839)
Q Consensus 633 ~~h~~~~Vt~i~~~~~~~~~~~l~s~------~~Dg~i~iw~ 668 (839)
.| ...+.|+ +++.+|+++ +.|..+.+|.
T Consensus 469 -~~----~~~v~~s---~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 469 -VN----AKDVIWS---DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp -SC----EEEEEEC---TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred -cC----CCEEEEc---CCCCEEEEEEcCcccCCceEEEEEe
Confidence 22 2288899 889999999 7776666654
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-37 Score=371.41 Aligned_cols=469 Identities=13% Similarity=0.152 Sum_probs=341.6
Q ss_pred eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce
Q 003208 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (839)
Q Consensus 56 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (839)
....+..|.. +|.+++|+ |+++ .+++++.++.|+|||+.. ++.+..+.+|...|
T Consensus 5 ~~~~~~~h~~-~v~~i~~s-------p~~~---~la~~~~~g~v~iwd~~~---------------~~~~~~~~~~~~~v 58 (814)
T 3mkq_A 5 IKKTFSNRSD-RVKGIDFH-------PTEP---WVLTTLYSGRVEIWNYET---------------QVEVRSIQVTETPV 58 (814)
T ss_dssp CEEEEEEECS-CEEEEEEC-------SSSS---EEEEEETTSEEEEEETTT---------------TEEEEEEECCSSCE
T ss_pred cceeeecCCC-ceEEEEEC-------CCCC---EEEEEeCCCEEEEEECCC---------------CceEEEEecCCCcE
Confidence 4566776655 79999999 8883 455556689999999875 56777888999999
Q ss_pred EEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 136 ~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
++++|+| ++++|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++.+|++++.||.|++|++.
T Consensus 59 ~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~---- 127 (814)
T 3mkq_A 59 RAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE---- 127 (814)
T ss_dssp EEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEEGG----
T ss_pred EEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEEEEEE---eCCCCEEEEEcCCCEEEEEECC----
Confidence 9999999 999999999999999999999999988876654 3666766 6889999999999999999998
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccc-eeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDS 293 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~ 293 (839)
.. .....+.+|...|.+++|+| ++..|++++.|+.|++||+.....
T Consensus 128 -----------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--- 175 (814)
T 3mkq_A 128 -----------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--- 175 (814)
T ss_dssp -----------------------------GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---
T ss_pred -----------------------------CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---
Confidence 33 56677889999999999999 889999999999999999987654
Q ss_pred CCceeeeceEee-ccccceEEeEEC----CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEe
Q 003208 294 DSIEEVGSSVLY-GHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 294 ~~~~~~~~~~~~-~h~~~v~~~~~~----~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
.. .+. .+...+.+++|+ +.++++++.||.|++||+ +++.+..+..|.. .|.+++|+|++.++++++
T Consensus 176 --~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 176 --NF-----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp --SE-----EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEE
T ss_pred --ee-----EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Confidence 22 333 444889999996 579999999999999999 7888899998988 699999999999999999
Q ss_pred CCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe--EEEEeccceEEE
Q 003208 368 FDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYH 444 (839)
Q Consensus 368 ~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~g~i~~ 444 (839)
.||.|++||+.. ..... ...+...+.+++|+|++. +++++.++.+..
T Consensus 248 ~dg~v~vwd~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKT------------------------------LNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp TTSCEEEEETTTCSEEEE------------------------------ECCSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred CCCeEEEEECCCCcEEEE------------------------------eecCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 999999999854 21111 122335699999999985 566666777766
Q ss_pred EEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCcc---EEE------EEEcCCCCCCcceeeeE
Q 003208 445 TKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN---MTI------VRVVGDVHTPQLSFTFT 515 (839)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~---i~l------~~~~~~~~~~~~~~~~~ 515 (839)
+++..... . +.+.+ ++..+++++.+.. +.. |++..+.........
T Consensus 298 ~~~~~~~~--------------~--~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 351 (814)
T 3mkq_A 298 LSLGNDEP--------------T--LSLDP--------VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE-- 351 (814)
T ss_dssp EECSCCSC--------------C--EEECS--------SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEE--
T ss_pred EEcCCCCc--------------e--eEECC--------CCCEEEECcccccceeeeeeecccccccccCccceeeeec--
Confidence 55432211 1 12222 2355565554432 111 111111111110000
Q ss_pred eeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEE
Q 003208 516 WSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595 (839)
Q Consensus 516 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 595 (839)
.......+.. .+++|++++|++++ ++.+.+|++.... ..+...|++++|+|++++|
T Consensus 352 -~~~~~~~~~~--~~~spdg~~la~~~-~~~~~i~~~~~~~--------------------~~~~~~i~~~~~spdg~~l 407 (814)
T 3mkq_A 352 -LGSVDVFPQS--LAHSPNGRFVTVVG-DGEYVIYTALAWR--------------------NKAFGKCQDFVWGPDSNSY 407 (814)
T ss_dssp -ECCCSSCCSE--EEECTTSSEEEEEE-TTEEEEEETTTTE--------------------EEEEEECSEEEECTTSSCE
T ss_pred -CCCCccCCce--eEECCCCCEEEEec-CCEEEEEECcccc--------------------ccCCCceEEEEEeCCCCeE
Confidence 0111111222 56899999999988 8999999975321 1235678899999999999
Q ss_pred EEecCCccEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCc---eEEEeecCcCcEEEEEEecC
Q 003208 596 FCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYDKD 672 (839)
Q Consensus 596 a~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~---~~l~s~~~Dg~i~iw~~~~~ 672 (839)
|+++.+|.|++|+.-. .|. ..|.++.|+ +++ .+|++++.||.|++|++..+
T Consensus 408 a~~~~~g~v~l~~~~~----------------------~~~-~~v~~~~~s---~dg~~~~~l~~~~~d~~v~~~d~~~~ 461 (814)
T 3mkq_A 408 ALIDETGQIKYYKNFK----------------------EVT-SWSVPMHSA---IDRLFSGALLGVKSDGFVYFFDWDNG 461 (814)
T ss_dssp EEECTTCCEEEEETTE----------------------ECT-TCCCCCSSC---CCEEECSSSEEEEETTEEEEECTTTC
T ss_pred EEEeCCCcEEEEECCC----------------------Ccc-ceEEcCCcC---ccceecceEEEEecCCEEEEEECCcC
Confidence 9999999999996432 121 346777777 665 48999999999999999876
Q ss_pred CceeeEeeeeeeeeeeeEEEEeecCCccCcccceEEEe------eecccEEEEe
Q 003208 673 RESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAG------FASTDFIIWN 720 (839)
Q Consensus 673 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g------~~~~~~~~w~ 720 (839)
+....+.. + ...+.|+ .++..++.+ ..+..+++|.
T Consensus 462 ~~~~~~~~----~----~~~v~~s-----~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 462 TLVRRIDV----N----AKDVIWS-----DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp CEEEEESS----C----EEEEEEC-----TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred cEEEEEec----C----CCEEEEc-----CCCCEEEEEEcCcccCCceEEEEEe
Confidence 43211111 1 1144453 346667766 5555566665
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-38 Score=338.79 Aligned_cols=279 Identities=19% Similarity=0.356 Sum_probs=249.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ +.++++|+ |+.|+|||+.+++.+.+++.|.. .|.+++|+ |+++ .+++++
T Consensus 107 h~~~V~~~~~~--p~----~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~-------~~~~---~l~sgs 169 (410)
T 1vyh_C 107 HRSPVTRVIFH--PV----FSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFD-------HSGK---LLASCS 169 (410)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred cCCcEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-cEEEEEEc-------CCCC---EEEEEe
Confidence 78899999999 99 78888888 89999999999999999998765 69999999 8874 566667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|++|+|||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++.++..+.
T Consensus 170 ~D~~i~iwd~~~---------------~~~~~~~~~h~~~V~~v~~~p---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 170 ADMTIKLWDFQG---------------FECIRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp TTSCCCEEETTS---------------SCEEECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEeCCC---------------CceeEEEcCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 799999999874 567888999999999999999 99999999999999999999999998887
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
.+... +..+.+ ++++.+|++|+.|+.|++||+. .......+.+
T Consensus 232 ~h~~~-v~~~~~---~~~g~~l~s~s~D~~v~vwd~~---------------------------------~~~~~~~~~~ 274 (410)
T 1vyh_C 232 GHREW-VRMVRP---NQDGTLIASCSNDQTVRVWVVA---------------------------------TKECKAELRE 274 (410)
T ss_dssp CCSSC-EEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCcc-EEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCceeeEecC
Confidence 76543 445555 6889999999999999999998 6677788899
Q ss_pred CCCCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe
Q 003208 255 HEGSIFRIEWSSC--------------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (839)
Q Consensus 255 h~~~V~~l~~~~~--------------------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 314 (839)
|...|.+++|+|+ +.+|++|+.|++|++||++++.. . ..+.+|...|.++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-----~-----~~~~~h~~~v~~v 344 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----L-----MTLVGHDNWVRGV 344 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-----E-----EEEECCSSCEEEE
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce-----E-----EEEECCCCcEEEE
Confidence 9999999999996 67899999999999999988655 2 3778999999999
Q ss_pred EEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 315 CLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 315 ~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+|+ +.+|++|+.|++|++||+ .++++..+..|.. .|++++|+|++.+|++|+.||+|++|++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 998 689999999999999999 7888999999998 6999999999999999999999999986
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=316.80 Aligned_cols=284 Identities=17% Similarity=0.277 Sum_probs=243.3
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCee--eeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
.|.++|++|+|+ |+....+.+|++|+ |++|+|||+.+++. ...+..|.. .|.+++++ +++. .++
T Consensus 30 ~H~~~V~~v~~~--~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-~v~~~~~~-------~~~~---~l~ 96 (321)
T 3ow8_A 30 AHDDAIWSVAWG--TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-GVVSVDIS-------HTLP---IAA 96 (321)
T ss_dssp SSSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC-------SSSS---EEE
T ss_pred cCCCcEEEEEEe--cCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-CEEEEEEC-------CCCC---EEE
Confidence 389999999998 74111256888888 99999999987754 335666554 69999999 7763 555
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+++.|++|++||+.. .+.+..+..|...+.+++|+| ++++|++|+.|+.|++||+.+++...
T Consensus 97 s~s~D~~i~lWd~~~---------------~~~~~~~~~~~~~~~~~~~sp---dg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 97 SSSLDAHIRLWDLEN---------------GKQIKSIDAGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEETTSEEEEEETTT---------------TEEEEEEECCTTCCCCEEECT---TSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred EEeCCCcEEEEECCC---------------CCEEEEEeCCCccEEEEEECC---CCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 566799999999975 456777888999999999999 99999999999999999999998888
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (839)
.+..+.. .+.++.+ +|++.+|++|+.||.|++||+. +++.+..
T Consensus 159 ~~~~~~~-~v~~~~~---spdg~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~ 201 (321)
T 3ow8_A 159 SLDTRGK-FILSIAY---SPDGKYLASGAIDGIINIFDIA---------------------------------TGKLLHT 201 (321)
T ss_dssp EEECSSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEEE
T ss_pred EecCCCc-eEEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCcEEEE
Confidence 7765543 3556666 6899999999999999999998 7788888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCe
Q 003208 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (839)
Q Consensus 252 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 329 (839)
+.+|...|.+++|+|++++|++++.|++|++||++.... . ..+.+|...|.+++|+ +.+|++++.|++
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-----~-----~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-----A-----GTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-----E-----EEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-----e-----EEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 999999999999999999999999999999999987654 2 3778999999999998 579999999999
Q ss_pred EEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 330 i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
|++||+ +++++..+..|.. .|++++|+|++++|++++.||.|++||.
T Consensus 272 v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 272 VKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999 7899999999988 6999999999999999999999999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6e-36 Score=316.16 Aligned_cols=283 Identities=16% Similarity=0.254 Sum_probs=243.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ +++|++|+ |+.|+|||..+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 54 H~~~v~~~~~s--~d----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s-------~~~~---~l~s~~ 116 (340)
T 1got_B 54 HLAKIYAMHWG--TD----SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYA-------PSGN---YVACGG 116 (340)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEEC-------CCCC---EEEEEe
Confidence 88999999999 99 88888888 99999999999999998887655 69999999 8874 555566
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|+.|++|++..... .......+.+|.+.|.++.|++ ++. +++++.|+.|++||+.+++.+..+.
T Consensus 117 ~d~~v~iw~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~---~~~-l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 117 LDNICSIYNLKTREG-----------NVRVSRELAGHTGYLSCCRFLD---DNQ-IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCEEEEEETTTCSB-----------SCEEEEEEECCSSCEEEEEEEE---TTE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECccCCC-----------cceeEEEecCCCccEEEEEECC---CCc-EEEEECCCcEEEEECCCCcEEEEEc
Confidence 799999999875320 1355677889999999999998 665 8899999999999999999988887
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
.+.. .+.++.+ ++++.++++|+.|+.|++||++ .......+.+
T Consensus 182 ~h~~-~v~~~~~---~~~~~~l~sg~~d~~v~~wd~~---------------------------------~~~~~~~~~~ 224 (340)
T 1got_B 182 GHTG-DVMSLSL---APDTRLFVSGACDASAKLWDVR---------------------------------EGMCRQTFTG 224 (340)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCSEEEEECC
T ss_pred CCCC-ceEEEEE---CCCCCEEEEEeCCCcEEEEECC---------------------------------CCeeEEEEcC
Confidence 6654 3566766 6889999999999999999998 6777888999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 332 (839)
|...|.+++|+|++++|++++.|++|++||++.... ... .....+...|.+++|+ +.++++|+.|+.|++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----~~~---~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----LMT---YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEE---ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-----EEE---EccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 999999999999999999999999999999987654 110 1122334579999998 689999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
||. .++.+..+.+|.. +|.+++|+|++.+|++|+.|+.|++||
T Consensus 297 wd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999 7888999999998 799999999999999999999999996
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=314.37 Aligned_cols=295 Identities=15% Similarity=0.156 Sum_probs=228.3
Q ss_pred ccccccCCCc---eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCC-----------CeeeeEEeeecCceEEeE
Q 003208 6 LSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-----------GTLIRPFQVFHGIRLHGI 71 (839)
Q Consensus 6 i~~w~~~~~~---~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~-----------~~~~~~~~~~~~~~v~~i 71 (839)
.+.|++.... |.+.|.+++|+ || |++|+++++.++++||... .........+ ...|.++
T Consensus 16 ~r~w~~~~~~~~~~~~~v~~~~fs--~d----G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 88 (344)
T 4gqb_B 16 AREWNLPPNAPACMERQLEAARYR--SD----GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT-EAGVADL 88 (344)
T ss_dssp -------CCSCSSCCSEEEEEEEC--TT----SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE-SSCEEEE
T ss_pred ccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeecc-CCCEEEE
Confidence 4678775543 66789999999 99 8999999988899887321 0111111122 2369999
Q ss_pred EecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE
Q 003208 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (839)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la 151 (839)
+|+ |++ .+++++.|++|+|||+..+.. .......+.+|.+.|++++|+| ++++|+
T Consensus 89 ~~s-------~d~----~l~~~s~dg~v~lWd~~~~~~-----------~~~~~~~~~~H~~~V~~v~~sp---dg~~l~ 143 (344)
T 4gqb_B 89 TWV-------GER----GILVASDSGAVELWELDENET-----------LIVSKFCKYEHDDIVSTVSVLS---SGTQAV 143 (344)
T ss_dssp EEE-------TTT----EEEEEETTSEEEEEEECTTSS-----------CEEEEEEEECCSSCEEEEEECT---TSSEEE
T ss_pred EEe-------CCC----eEEEEECCCEEEEEeccCCCc-----------eeEeeccccCCCCCEEEEEECC---CCCEEE
Confidence 999 886 788888899999999986431 1233345679999999999999 999999
Q ss_pred EEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccc-eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCC
Q 003208 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 152 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 230 (839)
+|+.|++|++||+.+++.+..+.+|... +.++.+ ++++ .++++|+.|+.|++||++
T Consensus 144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~-V~~~~~---~~~~~~~l~s~s~D~~v~iwd~~------------------- 200 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQ-VTCVAA---SPHKDSVFLSCSEDNRILLWDTR------------------- 200 (344)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEE---CSSCTTEEEEEETTSCEEEEETT-------------------
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCcCCc-eEEEEe---cCCCCCceeeecccccccccccc-------------------
Confidence 9999999999999999999998877643 566666 4555 578999999999999998
Q ss_pred CCCceeeEeecccccceeeEEE--ecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc
Q 003208 231 SSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (839)
..++...+ ..|...+.+++|+|+ +++|++|+.|++|++||+++.+. + ..+.+|
T Consensus 201 --------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----~-----~~~~~h 256 (344)
T 4gqb_B 201 --------------CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----V-----LSSAVH 256 (344)
T ss_dssp --------------SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----C-----EEEECC
T ss_pred --------------ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----E-----EEEcCC
Confidence 45555444 356678999999995 56889999999999999998765 2 378899
Q ss_pred ccceEEeEEC--C-CEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCc
Q 003208 308 NARVWDCCLT--D-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 308 ~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~ 380 (839)
...|++++|+ + .+|++|+.|++|++||+....+..+.+|.+ .|++++|+|++. +|+++|.|++|++|++...
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~-~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD-FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC-CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999999998 3 579999999999999995555667889988 699999999985 6789999999999999653
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-35 Score=312.12 Aligned_cols=288 Identities=12% Similarity=0.209 Sum_probs=241.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|+|++|+ |+ +++|++|+ |+.|+|||..+++....+..+.. .|.+++|+ |+|+ .+++++
T Consensus 63 H~~~V~~~~~s--~d----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~s-------p~g~---~lasg~ 125 (354)
T 2pbi_B 63 HGNKVLCMDWC--KD----KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAYA-------PSGC---AIACGG 125 (354)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEEC-------TTSS---EEEEES
T ss_pred CCCeEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEEC-------CCCC---EEEEee
Confidence 88999999999 99 78888888 99999999999998888887554 69999999 8883 444445
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|+.+++|++....... .......+.+|.+.|.+++|+| ++..|++++.|++|++||+++++.+..+.
T Consensus 126 ~d~~i~v~~~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNEN---------MAAKKKSVAMHTNYLSACSFTN---SDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSEEEEEECCCCTTCC---------SGGGCEEEEECSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEEecccccc---------ccccceeeeccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 59999999987532111 0234456678999999999999 99999999999999999999999999888
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
.+... +.++.+. .++++.+|++|+.||.|++||++ ..+++..+.+
T Consensus 194 ~h~~~-v~~~~~~-~~~~g~~l~sgs~Dg~v~~wd~~---------------------------------~~~~~~~~~~ 238 (354)
T 2pbi_B 194 GHGAD-VLCLDLA-PSETGNTFVSGGCDKKAMVWDMR---------------------------------SGQCVQAFET 238 (354)
T ss_dssp CCSSC-EEEEEEC-CCSSCCEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCCC-eEEEEEE-eCCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEecC
Confidence 76543 4444442 23467899999999999999998 6778888999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 332 (839)
|...|.+++|+|++++|++++.|++|++||++.... ... .....+...+.+++|+ +.++++|+.|+.|++
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-----~~~---~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-----VAI---YSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEE---ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----EEE---EcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 999999999999999999999999999999987644 111 1112334578899998 689999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
||+ +++.+..+.+|.. .|++++|+|++++|++|+.|++|++|+
T Consensus 311 wd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999 8889999999998 699999999999999999999999996
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.3e-35 Score=303.59 Aligned_cols=279 Identities=18% Similarity=0.310 Sum_probs=234.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++|+|+ |+ +++|++|+ |+.|+|||+.+++.+..+..+.. +|.+++|+ |+++ .+++++
T Consensus 12 h~~~V~~~~fs--p~----~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~s~s 74 (304)
T 2ynn_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFI-------ARKN---WIIVGS 74 (304)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------GGGT---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEe-------CCCC---EEEEEC
Confidence 78899999999 99 88888888 99999999999999999987665 69999999 7774 666677
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE-EEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~-~~~ 173 (839)
.|++|++||+.+ .+.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+ ..+
T Consensus 75 ~d~~i~vwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 75 DDFRIRVFNYNT---------------GEKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEECCC---------------CcEEEEEeCCCCcEEEEEEcC---CCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 799999999975 457788899999999999999 9999999999999999999887554 444
Q ss_pred ecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
..+. ..+.++.+ +| ++.+|++|+.|+.|++||+. ...+...+
T Consensus 137 ~~h~-~~v~~v~~---~p~~~~~l~sgs~D~~v~iwd~~---------------------------------~~~~~~~~ 179 (304)
T 2ynn_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (304)
T ss_dssp CCCC-SCEEEEEE---CTTCTTEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cccC-CcEEEEEE---CCCCCCEEEEEeCCCeEEEEECC---------------------------------CCCcccee
Confidence 4443 44667776 45 67899999999999999987 33333333
Q ss_pred -ecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC
Q 003208 253 -VGHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (839)
Q Consensus 253 -~~h~~~V~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d 327 (839)
.+|...|..+.|+| ++++|++++.|++|++||+++... . ..+.+|...|.+++|+ +.+|++|+.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-----~-----~~~~~h~~~v~~~~~~p~~~~l~s~s~D 249 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----V-----ATLEGHMSNVSFAVFHPTLPIIISGSED 249 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-----E-----EEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-----c-----eeeCCCCCCEEEEEECCCCCEEEEEcCC
Confidence 46778999999987 678999999999999999988655 2 3788999999999999 4789999999
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCC--EEEEEeCCCcEEEEecC
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~--~l~t~~~dg~i~iw~~~ 378 (839)
|+|++||. +++.+..+..|.. .+++++++|++. ++++|+.| .+.+|++.
T Consensus 250 g~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp SCEEEEETTTCCEEEEECCSSS-SEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred CeEEEEECCCCceeeeccCCCc-cEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence 99999999 7889999998887 699999999875 57776655 57777764
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-36 Score=321.92 Aligned_cols=307 Identities=15% Similarity=0.241 Sum_probs=245.0
Q ss_pred CccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEeccc
Q 003208 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (839)
Q Consensus 5 ~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 76 (839)
++..|+..... |.++|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..+.. .|.+++|+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~s--p~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-~v~~~~~s-- 117 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWT--PE----KNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-WVMECAFA-- 117 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEEC--TT----SSCEEEEETTSEEEEEETTTTEEEEEEECCCT-TCCCCEEC--
T ss_pred cccccccceeEEeecccccccEEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCccceEEecCCC-CEEEEEEC--
Confidence 44556665432 88999999999 99 78888888 99999999999999999987665 69999999
Q ss_pred ccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC-CcEEEEEeC
Q 003208 77 NCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCS 155 (839)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~-~~~las~~~ 155 (839)
|+|+ .+++++.|+.+++|++........ .......+.+|.+.|.++.|+| + +..|++|+.
T Consensus 118 -----~~g~---~las~~~d~~v~iw~~~~~~~~~~--------~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~s~s~ 178 (380)
T 3iz6_a 118 -----PNGQ---SVACGGLDSACSIFNLSSQADRDG--------NMPVSRVLTGHKGYASSCQYVP---DQETRLITGSG 178 (380)
T ss_dssp -----TTSS---EEEECCSSSCCEEEECCCCSSCCC--------SSTTCCBCCCCSSCCCCCBCCS---SSSSCEEEECT
T ss_pred -----CCCC---EEEEeeCCCcEEEEECCCCccccC--------CccceeeccCCCcceEEEEEec---CCCCEEEEECC
Confidence 8883 444455699999999975321111 1234567889999999999998 5 457999999
Q ss_pred CCcEEEEecCCCceEEEEec----CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCC
Q 003208 156 DNSIRVWDISNSSIILEVHS----PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (839)
Q Consensus 156 d~~i~vwd~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 231 (839)
|++|++||+.+++.+..+.. .....+.++.+. +.++.++++|+.|+.|++||++.
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~sgs~D~~v~~wd~~~------------------- 237 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN--SLNANMFISGSCDTTVRLWDLRI------------------- 237 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC--SSSCCEEEEEETTSCEEEEETTT-------------------
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee--cCCCCEEEEEECCCeEEEEECCC-------------------
Confidence 99999999999998877631 223345566552 45788999999999999999871
Q ss_pred CCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec--eEeecccc
Q 003208 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309 (839)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~ 309 (839)
....+..+.+|.+.|.+++|+|++++|++++.|++|++||++++.. ...+.. .....+..
T Consensus 238 -------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~ 299 (380)
T 3iz6_a 238 -------------TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-----LQVYNREPDRNDNELP 299 (380)
T ss_dssp -------------TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-----EEEECCCCSSSCCSSC
T ss_pred -------------CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-----EEEecccccccccccC
Confidence 3456778899999999999999999999999999999999998755 221110 00112234
Q ss_pred ceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEe----ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 310 RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI----KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 310 ~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~----~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.|.+++|+ +.++++|+.||.|++||. .++.+..+ .+|.+ .|.+++|+|++.+|++|+.|+.|++|++.+
T Consensus 300 ~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 58899998 689999999999999999 77777766 56777 699999999999999999999999999864
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-35 Score=315.00 Aligned_cols=296 Identities=14% Similarity=0.154 Sum_probs=223.8
Q ss_pred CcCccccccCCCc---eeeeeeEEEEecCCCCCCCcceEEEee-------CCeeEEEECCCCeeee----EEeeecCceE
Q 003208 3 KKDLSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLIR----PFQVFHGIRL 68 (839)
Q Consensus 3 d~~i~~w~~~~~~---~~~~Vt~l~f~~~~~~~~~~~~l~~g~-------~~~v~iwd~~~~~~~~----~~~~~~~~~v 68 (839)
+.....|++.... |.+.|++|+|+ || |++|++|+ |+.|++|+..++.... ....++. .|
T Consensus 25 ~~~~~~w~~p~~~p~~H~~~V~~v~fS--pD----G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~-~V 97 (357)
T 4g56_B 25 SSKGSAWGRPVTAPACMEVQIGAVRYR--RD----GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA-GV 97 (357)
T ss_dssp ---------------CCCSEEEEEEEC--SS----SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS-CE
T ss_pred CccccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC-CE
Confidence 4556788875543 88999999999 99 89999987 4679999988775433 2233344 69
Q ss_pred EeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCc
Q 003208 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (839)
Q Consensus 69 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~ 148 (839)
.+++|+ |++ .+++++.|++|+|||+...... ........+|.+.|++++|+| +++
T Consensus 98 ~~~~~s-------~d~----~~l~~s~dg~v~lWd~~~~~~~-----------~~~~~~~~~h~~~V~~v~~sp---dg~ 152 (357)
T 4g56_B 98 TDVAWV-------SEK----GILVASDSGAVELWEILEKESL-----------LVNKFAKYEHDDIVKTLSVFS---DGT 152 (357)
T ss_dssp EEEEEE-------TTT----EEEEEETTSCEEEC-------------------CCCCEEECCCSSCEEEEEECS---SSS
T ss_pred EEEEEc-------CCC----CEEEEECCCEEEEeecccccee-----------EEEeeccCCCCCCEEEEEECC---CCC
Confidence 999999 887 7888899999999999864310 112234568999999999999 999
Q ss_pred EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccc-eEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 149 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
+|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++ .++++++.|+.|++||++
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~---s~~~~~~~~s~~~dg~v~~wd~~---------------- 212 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAA---CPGKDTIFLSCGEDGRILLWDTR---------------- 212 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CTTCSSCEEEEETTSCEEECCTT----------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEE---ccCCCceeeeeccCCceEEEECC----------------
Confidence 999999999999999999999988876654 3566666 3544 578999999999999988
Q ss_pred CCCCCCceeeEeecccccceeeE--EEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLF--RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
..++.. .+..|...|.+++|+|++ .+|++++.|+.|++||+++.+. . ..+
T Consensus 213 -----------------~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-----~-----~~~ 265 (357)
T 4g56_B 213 -----------------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-----A-----QTS 265 (357)
T ss_dssp -----------------SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-----C-----EEE
T ss_pred -----------------CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-----e-----EEE
Confidence 333332 234577889999999974 6789999999999999988765 2 377
Q ss_pred eccccceEEeEEC--C-CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 003208 305 YGHNARVWDCCLT--D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 305 ~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~-~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+|...|++++|+ + .+|++|+.|++|+|||+ .++.+ ...+|.. .|++++|+| ++.+|++++.||+|++|++..
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~~~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-RDLSHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-EECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-EECCCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 8899999999998 2 57999999999999999 55555 4457887 699999998 789999999999999999854
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-34 Score=312.45 Aligned_cols=291 Identities=17% Similarity=0.363 Sum_probs=236.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecC-----------------ceEEeEEeccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG-----------------IRLHGISCNFINC 78 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~-----------------~~v~~i~~~~~~~ 78 (839)
|.++|+|++|+ || +++|++|.++.++||++.+++.+..+..+.. ..|.+++|+
T Consensus 63 h~~~V~~v~fs--pd----g~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---- 132 (393)
T 1erj_A 63 HTSVVCCVKFS--ND----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS---- 132 (393)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC----
T ss_pred CCCEEEEEEEC--CC----CCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC----
Confidence 77899999999 99 8999999999999999999998887764321 138899999
Q ss_pred ccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCc
Q 003208 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~ 158 (839)
|+|+ .+++++.|+.|+|||+.. .+.+..+.+|...|++++|+| ++.+|++|+.|++
T Consensus 133 ---~dg~---~l~s~~~d~~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~s~d~~ 188 (393)
T 1erj_A 133 ---PDGK---FLATGAEDRLIRIWDIEN---------------RKIVMILQGHEQDIYSLDYFP---SGDKLVSGSGDRT 188 (393)
T ss_dssp ---TTSS---EEEEEETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred ---CCCC---EEEEEcCCCeEEEEECCC---------------CcEEEEEccCCCCEEEEEEcC---CCCEEEEecCCCc
Confidence 8884 555666799999999975 467788899999999999999 9999999999999
Q ss_pred EEEEecCCCceEEEEecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceee
Q 003208 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (839)
Q Consensus 159 i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (839)
|++||+.+++....+..... +.++.+ ++ ++.+|++|+.|+.|++||+.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~--v~~~~~---~~~~~~~l~~~s~d~~v~iwd~~-------------------------- 237 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLSIEDG--VTTVAV---SPGDGKYIAAGSLDRAVRVWDSE-------------------------- 237 (393)
T ss_dssp EEEEETTTTEEEEEEECSSC--EEEEEE---CSTTCCEEEEEETTSCEEEEETT--------------------------
T ss_pred EEEEECCCCeeEEEEEcCCC--cEEEEE---ECCCCCEEEEEcCCCcEEEEECC--------------------------
Confidence 99999999988877764432 444544 34 78999999999999999987
Q ss_pred EeecccccceeeEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCc--eeeeceEeeccc
Q 003208 238 KLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI--EEVGSSVLYGHN 308 (839)
Q Consensus 238 ~~~~~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~h~ 308 (839)
....+..+ .+|...|.+++|+|++++|++++.|++|++||++.......... .......+.+|.
T Consensus 238 -------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 238 -------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp -------TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred -------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 33333333 68999999999999999999999999999999986432100000 000013677899
Q ss_pred cceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEcc------CCCEEEEEeCCCcEEEEecCC
Q 003208 309 ARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS------LSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 309 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~------~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..|.+++|+ +.+|++|+.|+.|++||. +++++..+.+|.. .|.+++|++ ++.+|++|+.||+|++|+++.
T Consensus 311 ~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999998 689999999999999999 8899999999998 699999876 678999999999999999843
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.5e-34 Score=295.89 Aligned_cols=287 Identities=15% Similarity=0.237 Sum_probs=234.6
Q ss_pred eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc
Q 003208 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (839)
Q Consensus 55 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 134 (839)
+...+++.|.. .|.+++|+ |+++ .+++++.|++|+|||+.+ ...+..+.+|..+
T Consensus 4 ~~~~~~~~h~~-~V~~~~fs-------p~~~---~l~s~~~dg~v~lWd~~~---------------~~~~~~~~~~~~~ 57 (304)
T 2ynn_A 4 DIKKTFSNRSD-RVKGIDFH-------PTEP---WVLTTLYSGRVELWNYET---------------QVEVRSIQVTETP 57 (304)
T ss_dssp CCEEEEEEECS-CEEEEEEC-------SSSS---EEEEEETTSEEEEEETTT---------------TEEEEEEECCSSC
T ss_pred eeEEeecCCCC-ceEEEEEC-------CCCC---EEEEEcCCCcEEEEECCC---------------CceeEEeeccCCc
Confidence 34567777665 69999999 8884 566667799999999975 4567788899999
Q ss_pred eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
|.+++|+| ++++|++|+.|++|++||+.+++.+..+..+.. .+.++.+ +|++.+|++|+.|+.|++||++
T Consensus 58 v~~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~sgs~D~~v~lWd~~--- 127 (304)
T 2ynn_A 58 VRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE--- 127 (304)
T ss_dssp EEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEGG---
T ss_pred EEEEEEeC---CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-cEEEEEE---cCCCCEEEEECCCCeEEEEECC---
Confidence 99999999 999999999999999999999999988887654 3667776 6889999999999999999997
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccc-eeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
.. .....+.+|...|.+++|+| ++..|++|+.|++|++||+.....
T Consensus 128 ------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-- 175 (304)
T 2ynn_A 128 ------------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-- 175 (304)
T ss_dssp ------------------------------GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--
T ss_pred ------------------------------CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--
Confidence 33 45567889999999999999 678999999999999999987654
Q ss_pred CCCceeeeceEeeccccceEEeEEC----CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEe
Q 003208 293 SDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
.. ....+|...+..+.|. +.++++++.|++|++||+ +++++..+.+|.. .|.+++|+|++.+|++|+
T Consensus 176 ---~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 176 ---NF----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp ---SE----EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEE
T ss_pred ---cc----eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEc
Confidence 11 1334567788888886 369999999999999999 7889999999998 699999999999999999
Q ss_pred CCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe--EEEEeccceEEE
Q 003208 368 FDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYH 444 (839)
Q Consensus 368 ~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~g~i~~ 444 (839)
.||.|++||++. +..+++ ..+...+.+++++|++. +++++.++.+..
T Consensus 248 ~Dg~i~iWd~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 248 EDGTLKIWNSSTYKVEKTL------------------------------NVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp TTSCEEEEETTTCCEEEEE------------------------------CCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCeEEEEECCCCceeeec------------------------------cCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999854 222222 22335689999998773 455554554544
Q ss_pred EEe
Q 003208 445 TKL 447 (839)
Q Consensus 445 ~~~ 447 (839)
+.+
T Consensus 298 ~~~ 300 (304)
T 2ynn_A 298 LSL 300 (304)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=299.88 Aligned_cols=290 Identities=16% Similarity=0.183 Sum_probs=237.0
Q ss_pred eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceE
Q 003208 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (839)
Q Consensus 57 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 136 (839)
...++.|.+ .|.+++|++.. .+++. .+++++.|++|+||++.... ......+.+|...|.
T Consensus 25 ~~~~~~H~~-~V~~v~~~~~~---~~~~~---~l~tgs~D~~v~vW~~~~~~-------------~~~~~~l~gh~~~v~ 84 (321)
T 3ow8_A 25 FKQEQAHDD-AIWSVAWGTNK---KENSE---TVVTGSLDDLVKVWKWRDER-------------LDLQWSLEGHQLGVV 84 (321)
T ss_dssp EEETTSSSS-CEEEEEEC----------C---EEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEE
T ss_pred eeecccCCC-cEEEEEEecCC---CCCCC---EEEEEcCCCCEEEEECCCCC-------------eeeeeeeccCCCCEE
Confidence 344445544 79999998321 01231 56666779999999997543 456678899999999
Q ss_pred EEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccc
Q 003208 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (839)
Q Consensus 137 ~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~ 216 (839)
+++|+| ++.++++++.|++|++||+.+++.+..+..+... ++++.+ +|++.+|++|+.||.|++|++.
T Consensus 85 ~~~~~~---~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~---spdg~~l~~g~~dg~v~i~~~~----- 152 (321)
T 3ow8_A 85 SVDISH---TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-AWTLAF---SPDSQYLATGTHVGKVNIFGVE----- 152 (321)
T ss_dssp EEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-CCCEEE---CTTSSEEEEECTTSEEEEEETT-----
T ss_pred EEEECC---CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-EEEEEE---CCCCCEEEEEcCCCcEEEEEcC-----
Confidence 999999 9999999999999999999999998888755432 344555 6899999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCc
Q 003208 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (839)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 296 (839)
..+....+..|...|.+++|+|++++|++++.|+.|++||+++++. +
T Consensus 153 ----------------------------~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~-----~ 199 (321)
T 3ow8_A 153 ----------------------------SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-----L 199 (321)
T ss_dssp ----------------------------TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----E
T ss_pred ----------------------------CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----E
Confidence 6667778889999999999999999999999999999999988655 2
Q ss_pred eeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEE
Q 003208 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (839)
Q Consensus 297 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~ 373 (839)
..+.+|..+|.+++|+ +.+|++++.|+.|++||+ .++.+..+.+|.. .|.+++|+|++.+|++++.|++|+
T Consensus 200 -----~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 200 -----HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp -----EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEE
Confidence 2677899999999998 579999999999999999 7888899999998 699999999999999999999999
Q ss_pred EEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEe
Q 003208 374 VHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKL 447 (839)
Q Consensus 374 iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~ 447 (839)
+||++. .+++++ ..|...|.+++|+|++. +++++.+|.+.+|+.
T Consensus 274 iwd~~~~~~~~~~------------------------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 274 VWDVGTRTCVHTF------------------------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTTTEEEEEE------------------------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCCEEEEEE------------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999954 222222 23456799999999885 555667888876653
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=298.60 Aligned_cols=298 Identities=18% Similarity=0.248 Sum_probs=220.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC--eeeeEEe-eecCceEEeEEecccccccCCCccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~--~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
|.++|.+++|+ |+ +|++|+ |+.|+|||+.++ +.+..+. ..+...|.+++|+ |+++ .++
T Consensus 13 h~~~v~~~~~s--~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------p~~~---~la 74 (330)
T 2hes_X 13 YKEKIWSFDFS--QG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-------PHTS---LLA 74 (330)
T ss_dssp CSSCEEEEEEE--TT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-------TTSS---EEE
T ss_pred CCCceeeeccC--CC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-------CCCC---EEE
Confidence 78899999999 54 777777 999999999875 4455552 3244579999999 8873 555
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC-C---
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-S--- 167 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~-~--- 167 (839)
+++.|++|+||++...... ....+++..+.+|.+.|++++|+| ++++||+|+.|++|++||+.. +
T Consensus 75 s~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~h~~~V~~v~~sp---~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADR--------TFEMDLLAIIEGHENEVKGVAWSN---DGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEETTSCEEEEEC---------------CCCEEEEEEC----CEEEEEECT---TSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEeCCCcEEEEEcccCcCc--------cccceeEEEEcCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 5667999999998642100 001456778899999999999999 999999999999999999943 2
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
+++..+..+.. .+.++.+ +|++.+|++|+.|+.|++||...+ ..+
T Consensus 144 ~~~~~~~~h~~-~v~~v~~---~p~~~~l~s~s~D~~i~iW~~~~~-------------------------------~~~ 188 (330)
T 2hes_X 144 ECISVLQEHSQ-DVKHVIW---HPSEALLASSSYDDTVRIWKDYDD-------------------------------DWE 188 (330)
T ss_dssp EEEEEECCCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEEETT-------------------------------EEE
T ss_pred EEEEEeccCCC-ceEEEEE---CCCCCEEEEEcCCCeEEEEECCCC-------------------------------Cee
Confidence 34555655543 4666766 688999999999999999998710 225
Q ss_pred eeEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec-cccceEEeEEC-CCEEEE
Q 003208 248 NLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIIT 323 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~l~s 323 (839)
++..+.+|.+.|.+++|+|+ +..|++++.|++|++||+.............. ..+.+ |...|++++|+ +.+|++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE--AILPDVHKRQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE--EECCSCCSSCEEEEEECTTSCEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe--eecccccccceEEEEEcCCCEEEE
Confidence 67788999999999999998 67899999999999999976432100000111 23334 89999999998 678999
Q ss_pred EeCCCeEEEEcC-CCc--eEEE-eecccCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCC
Q 003208 324 AGEDCTCRVWGS-DGK--QLKM-IKEHIGRGIWRCLYDS--LSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~--~~~~-~~~h~~~~i~~~~~~~--~~~~l~t~~~dg~i~iw~~~~ 379 (839)
++.||.|++|+. .++ .... +..|....|.+++|+| ++++|++|+.||.|++|+++.
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999999998 553 3333 3456643599999999 688999999999999999853
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-34 Score=309.87 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=240.9
Q ss_pred eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceE
Q 003208 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (839)
Q Consensus 57 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 136 (839)
...+..|.. +|.+++|+ |+++ .+++++.|++|+|||+.+ ++....+.+|.+.|+
T Consensus 101 ~~~l~gh~~-~V~~~~~~-------p~~~---~l~s~s~Dg~i~vwd~~~---------------~~~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 101 KYALSGHRS-PVTRVIFH-------PVFS---VMVSASEDATIKVWDYET---------------GDFERTLKGHTDSVQ 154 (410)
T ss_dssp SCEEECCSS-CEEEEEEC-------SSSS---EEEEEESSSCEEEEETTT---------------CCCCEEECCCSSCEE
T ss_pred eEeecccCC-cEEEEEEc-------CCCC---EEEEEeCCCeEEEEECCC---------------CcEEEEEeccCCcEE
Confidence 345565554 79999999 8873 566667799999999976 456678899999999
Q ss_pred EEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccc
Q 003208 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (839)
Q Consensus 137 ~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~ 216 (839)
+++|+| ++++|++|+.|++|++||+.+++++..+..+.. .+.++.+ +|++.+|++|+.|+.|++||+.
T Consensus 155 ~v~~~~---~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~V~~v~~---~p~~~~l~s~s~D~~i~~wd~~----- 222 (410)
T 1vyh_C 155 DISFDH---SGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-NVSSVSI---MPNGDHIVSASRDKTIKMWEVQ----- 222 (410)
T ss_dssp EEEECT---TSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEETT-----
T ss_pred EEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CEEEEEE---eCCCCEEEEEeCCCeEEEEECC-----
Confidence 999999 999999999999999999999998888876654 3667776 5889999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCc
Q 003208 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (839)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 296 (839)
.+.++..+.+|...|.++.|+|++.+|++|+.|++|++||+.+... .
T Consensus 223 ----------------------------~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~-----~ 269 (410)
T 1vyh_C 223 ----------------------------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-----K 269 (410)
T ss_dssp ----------------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----E
T ss_pred ----------------------------CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-----e
Confidence 6778888999999999999999999999999999999999988655 2
Q ss_pred eeeeceEeeccccceEEeEECC----------------------CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEE
Q 003208 297 EEVGSSVLYGHNARVWDCCLTD----------------------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 297 ~~~~~~~~~~h~~~v~~~~~~~----------------------~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~ 353 (839)
..+.+|...|.+++|++ .++++|+.|++|++||+ .++++..+.+|.. .|.+
T Consensus 270 -----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~ 343 (410)
T 1vyh_C 270 -----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRG 343 (410)
T ss_dssp -----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEE
T ss_pred -----eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEE
Confidence 36778999999999974 48999999999999999 7899999999998 6999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe
Q 003208 354 CLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (839)
Q Consensus 354 ~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 432 (839)
++|+|++++|++|+.||.|++||++. .++.+ +..|...|++++|+|++.
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~------------------------------~~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKT------------------------------LNAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSCCCEE------------------------------EECCSSCEEEEEECSSSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEE------------------------------EcCCCCcEEEEEEcCCCC
Confidence 99999999999999999999999854 22222 234556799999999885
Q ss_pred -EEEEeccceEEEEE
Q 003208 433 -LYIATNHGYLYHTK 446 (839)
Q Consensus 433 -~~~~~~~g~i~~~~ 446 (839)
+++++.+|.|.+|+
T Consensus 394 ~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWE 408 (410)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEeCCCcEEEEe
Confidence 55567788886654
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=299.34 Aligned_cols=292 Identities=17% Similarity=0.255 Sum_probs=229.8
Q ss_pred eee-eeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeE--EeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 16 YLG-EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP--FQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 16 ~~~-~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
|.+ +|.+|+|+ |+ +++|++|+ |+.|+|||..++..+.. +...+...|.+++|+ |+++ .++
T Consensus 14 h~~~~v~~l~~s--p~----g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-------p~g~---~l~ 77 (345)
T 3fm0_A 14 HPDSRCWFLAWN--PA----GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-------PCGN---YLA 77 (345)
T ss_dssp STTSCEEEEEEC--TT----SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-------TTSS---EEE
T ss_pred CCCCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-------CCCC---EEE
Confidence 444 89999999 99 78888877 89999999988764432 222344579999999 8884 556
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce--
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-- 169 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~-- 169 (839)
+++.|++++||++.... .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..
T Consensus 78 s~s~D~~v~iw~~~~~~-------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD-------------FECVTTLEGHENEVKSVAWAP---SGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp EEETTSCEEEEEECCC--------------EEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred EEECCCcEEEEEccCCC-------------eEEEEEccCCCCCceEEEEeC---CCCEEEEEECCCeEEEEECCCCCCeE
Confidence 66679999999997643 567888999999999999999 999999999999999999987643
Q ss_pred -EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc--
Q 003208 170 -ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-- 246 (839)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 246 (839)
+..+..+. ..+.++.+ +|++.+|++|+.|+.|++|+.. ..
T Consensus 142 ~~~~~~~h~-~~v~~~~~---~p~~~~l~s~s~d~~i~~w~~~---------------------------------~~~~ 184 (345)
T 3fm0_A 142 CVSVLNSHT-QDVKHVVW---HPSQELLASASYDDTVKLYREE---------------------------------EDDW 184 (345)
T ss_dssp EEEEECCCC-SCEEEEEE---CSSSSCEEEEETTSCEEEEEEE---------------------------------TTEE
T ss_pred EEEEecCcC-CCeEEEEE---CCCCCEEEEEeCCCcEEEEEec---------------------------------CCCE
Confidence 34444443 33566666 6889999999999999999987 33
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCC-------CceeeeceEeec-cccceEEeEEC-
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-------SIEEVGSSVLYG-HNARVWDCCLT- 317 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~-h~~~v~~~~~~- 317 (839)
.....+.+|...|.+++|+|++++|++++.|++|++|+.......... ..+.+ ..+.+ |...|++++|+
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI--CTLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE--EEECSSCSSCEEEEEECT
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee--EEecCCCCCcEEEEEEec
Confidence 345678899999999999999999999999999999997543221000 00111 13333 88999999998
Q ss_pred -CCEEEEEeCCCeEEEEcCC-Cc----e-----EEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecCC
Q 003208 318 -DSFIITAGEDCTCRVWGSD-GK----Q-----LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 318 -~~~l~s~~~dg~i~vw~~~-~~----~-----~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~~ 379 (839)
+..+++++.|+.|++|+.. +. + .....+|.. .|.+++|+|++ .+|++|+.||.|++|++..
T Consensus 263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS-CEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC-cEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 6899999999999999872 21 1 122346777 69999999997 5999999999999999954
No 27
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-33 Score=295.29 Aligned_cols=281 Identities=15% Similarity=0.220 Sum_probs=226.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC-----CeeeeEEeeecCceEEeEEecccccccCCCccceee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 89 (839)
|.++|++|+|+ |+ ++.+|++|+ |++|++||+.+ +..+..++.|.. .|.+++|+ |+++ .
T Consensus 16 H~~~V~~l~~~--~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s-------~dg~---~ 79 (319)
T 3frx_A 16 HNGWVTSLATS--AG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLT-------ADGA---Y 79 (319)
T ss_dssp CSSCEEEEEEC--SS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEEC-------TTSS---E
T ss_pred ccceEEEEEcc--CC---CccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEEC-------CCCC---E
Confidence 89999999999 86 347888877 99999999864 345667777655 69999999 8884 5
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
+++++.|++|+|||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+. ++.
T Consensus 80 l~s~s~D~~v~~wd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~D~~i~vwd~~-~~~ 140 (319)
T 3frx_A 80 ALSASWDKTLRLWDVAT---------------GETYQRFVGHKSDVMSVDIDK---KASMIISGSRDKTIKVWTIK-GQC 140 (319)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSCEEEEEETTSCEEEEETT-SCE
T ss_pred EEEEeCCCEEEEEECCC---------------CCeeEEEccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECC-CCe
Confidence 66667799999999975 567788899999999999999 99999999999999999996 456
Q ss_pred EEEEecCCceeEEEEeeccC---CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 170 ILEVHSPERCLLYSMKLWGD---NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~---~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
+..+..+.. .+.++.+... ..++..+++++.|+.|++||+. ..
T Consensus 141 ~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---------------------------------~~ 186 (319)
T 3frx_A 141 LATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---------------------------------QF 186 (319)
T ss_dssp EEEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETT---------------------------------TT
T ss_pred EEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---------------------------------cc
Confidence 666665543 3455555322 1245689999999999999998 66
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 324 (839)
+....+.+|...|.+++|+|++++|++++.|++|++||+...+. .. .+. +...|.+++|+ +.+++++
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-----~~-----~~~-~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA-----MY-----TLS-AQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EE-----EEE-CCSCEEEEEECSSSSEEEEE
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----EE-----Eec-CCCcEEEEEEcCCCCEEEEE
Confidence 77788899999999999999999999999999999999988655 21 333 45689999999 4566666
Q ss_pred eCCCeEEEEcC-CCceEEEeec--------ccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 325 GEDCTCRVWGS-DGKQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 325 ~~dg~i~vw~~-~~~~~~~~~~--------h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+ +..+++|++ .+..+..+.. |.. .+.+++|+|+|++|++|+.||.|++|++.
T Consensus 256 ~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 256 T-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP-HAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp E-TTEEEEEEETTEEEEEEECCCCTTCCGGGCC-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred c-CCCcEEEEeCcCeeeeccCccccccccCcCc-ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 6 556999999 4444444432 334 58999999999999999999999999984
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=308.51 Aligned_cols=348 Identities=16% Similarity=0.165 Sum_probs=261.5
Q ss_pred ccccccCCCc-------eeeeeeEEEEecCCCCCCCcc-eEEEee-CCeeEEEEC----CCCe------eeeEEee----
Q 003208 6 LSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDL----EAGT------LIRPFQV---- 62 (839)
Q Consensus 6 i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~-~l~~g~-~~~v~iwd~----~~~~------~~~~~~~---- 62 (839)
+.+|+..... |.++|++++|+ |+ ++ +|++|. |+.|+|||+ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWN--PL----DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL 100 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEEC--SS----CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred cccccchhhhhheeeeeccCceEEEEEC--CC----CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence 4567765543 55899999999 99 77 888887 899999999 8888 4555543
Q ss_pred e-----cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEE
Q 003208 63 F-----HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (839)
Q Consensus 63 ~-----~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 137 (839)
+ +...|.+++|+ |+++ .+++++.++.|++|+.. .+.+..+.+|...|.+
T Consensus 101 ~~~~~~~~~~v~~~~~s-------~~~~---~l~~~~~dg~i~i~~~~----------------~~~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWS-------HDGN---SIVTGVENGELRLWNKT----------------GALLNVLNFHRAPIVS 154 (425)
T ss_dssp C------CBCEEEEEEC-------TTSS---EEEEEETTSCEEEEETT----------------SCEEEEECCCCSCEEE
T ss_pred cccccCCCCceEEEEEc-------CCCC---EEEEEeCCCeEEEEeCC----------------CCeeeeccCCCccEEE
Confidence 1 34479999999 8874 56666679999999932 4677788899999999
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCcee--------------EEEEeeccCCccceEEEEeecCC
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL--------------LYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
++|+| ++++|++++.|+.|++||+.+++.+..+..+.... +.++.+ .++ ..+++++.+|
T Consensus 155 ~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g 227 (425)
T 1r5m_A 155 VKWNK---DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW---VDD-DKFVIPGPKG 227 (425)
T ss_dssp EEECT---TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE---EET-TEEEEECGGG
T ss_pred EEECC---CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE---cCC-CEEEEEcCCC
Confidence 99999 99999999999999999999998888776543220 333444 243 4688999999
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iw 283 (839)
.|++||+. ..+.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 228 ~i~~~d~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 228 AIFVYQIT---------------------------------EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp CEEEEETT---------------------------------CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEEEcC---------------------------------CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 99999998 667777888999999999999999999999999999999
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEECC-CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
|+..... . ..+.+|...|.+++|++ .++++++.|+.|++||+ .++.+..+..|.. +|.+++|+|+++
T Consensus 275 d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~ 343 (425)
T 1r5m_A 275 HGGNGNS-----Q-----NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQ 343 (425)
T ss_dssp CSSSBSC-----S-----EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSS
T ss_pred ECCCCcc-----c-----eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCC
Confidence 9988665 2 26678999999999983 49999999999999999 7888888988887 799999999999
Q ss_pred EEEEEeCCCcEEEEecCCcC--ccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCc--ceEEEEEecCCeEE-EE
Q 003208 362 LLVTAGFDSAIKVHQFQAFL--PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE--YVRCLHLTSEDTLY-IA 436 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~-~~ 436 (839)
+|++++.||.|++|+++... ...+.+... .++. +.....+..+..+.. .|++++|+|++.++ ++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD--------GILN---PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC-------------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccc--------cccC---cccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 99999999999999995421 111111110 0000 011122334445544 89999999998654 67
Q ss_pred eccceEEEEEe
Q 003208 437 TNHGYLYHTKL 447 (839)
Q Consensus 437 ~~~g~i~~~~~ 447 (839)
+.+|.+..|++
T Consensus 413 ~~dg~i~iw~~ 423 (425)
T 1r5m_A 413 YSLQEGSVVAI 423 (425)
T ss_dssp ESSSCCEEEEC
T ss_pred ecCceEEEEee
Confidence 78888887765
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-33 Score=293.70 Aligned_cols=280 Identities=15% Similarity=0.291 Sum_probs=237.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ +++|++|+ |+.|+||+..+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 22 h~~~v~~~~~s--~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~s~~ 84 (312)
T 4ery_A 22 HTKAVSSVKFS--PN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWS-------SDSN---LLVSAS 84 (312)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred cCCcEEEEEEC--CC----CCEEEEeeCCCeEEEEeCCCcccchhhccCCC-ceEEEEEc-------CCCC---EEEEEC
Confidence 78899999999 99 78888877 89999999999999888887665 69999999 8874 566667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|+.|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++.+..+.
T Consensus 85 ~d~~i~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 85 DDKTLKIWDVSS---------------GKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCC---------------CcEEEEEcCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 799999999975 456778889999999999999 99999999999999999999999888887
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-e
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V 253 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 253 (839)
.+.. .+.++.+ ++++.++++|+.||.|++||+. ..+.+..+ .
T Consensus 147 ~~~~-~v~~~~~---~~~~~~l~~~~~d~~i~~wd~~---------------------------------~~~~~~~~~~ 189 (312)
T 4ery_A 147 AHSD-PVSAVHF---NRDGSLIVSSSYDGLCRIWDTA---------------------------------SGQCLKTLID 189 (312)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCC-cEEEEEE---cCCCCEEEEEeCCCcEEEEECC---------------------------------CCceeeEEec
Confidence 6544 3556665 6889999999999999999998 45555444 3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe--EEC---CCEEEEEeCCC
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC--CLT---DSFIITAGEDC 328 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~---~~~l~s~~~dg 328 (839)
.|...+..++|+|++++|++++.|+.|++||+.+.+. .. .+.+|...+.++ .+. +.++++|+.||
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-----LK-----TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----EE-----EECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----EE-----EEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 5677899999999999999999999999999988654 22 555665543322 232 67999999999
Q ss_pred eEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEe--CCCcEEEEecC
Q 003208 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~--~dg~i~iw~~~ 378 (839)
.|++||+ +++.+..+.+|.. .|.+++|+|++.++++++ .|+.|++|+.+
T Consensus 260 ~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKLQGHTD-VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSS-CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhhhccCC-cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999 7888999999988 699999999999999997 69999999863
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-33 Score=293.17 Aligned_cols=290 Identities=17% Similarity=0.252 Sum_probs=233.2
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCC-cEEEEEeCCCcEEEEecCCC-----ceEEEEecCCceeEEEEeeccCCccceE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALR 195 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 195 (839)
+.+..++.+|.++|++++|+| ++ ++|++|+.|++|++|++... ..+..+.++.. .+.++.+ ++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~---~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~---s~dg~~ 79 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSA---GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTL---TADGAY 79 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECS---SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEE---CTTSSE
T ss_pred EEEEEEEccccceEEEEEccC---CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEE---CCCCCE
Confidence 567788999999999999998 55 79999999999999998642 33555666554 3556666 689999
Q ss_pred EEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
|++|+.|+.|++||+. +++.+..+.+|...|.+++|+|++.+|++++
T Consensus 80 l~s~s~D~~v~~wd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 126 (319)
T 3frx_A 80 ALSASWDKTLRLWDVA---------------------------------TGETYQRFVGHKSDVMSVDIDKKASMIISGS 126 (319)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCEEEEEECC---------------------------------CCCeeEEEccCCCcEEEEEEcCCCCEEEEEe
Confidence 9999999999999998 7788888999999999999999999999999
Q ss_pred CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC--------CEEEEEeCCCeEEEEcC-CCceEEEeecc
Q 003208 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--------SFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (839)
Q Consensus 276 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~l~s~~~dg~i~vw~~-~~~~~~~~~~h 346 (839)
.|++|++||++.... ..+.+|...|.+++|.+ ..+++++.|+.|++||+ ..+....+.+|
T Consensus 127 ~D~~i~vwd~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 127 RDKTIKVWTIKGQCL-----------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TTSCEEEEETTSCEE-----------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCeEEEEECCCCeE-----------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 999999999975433 37789999999999974 27999999999999999 77888889999
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEE
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 426 (839)
.. +|.+++|+|++++|++|+.||.|++||+.... .+..+. ....|.+++
T Consensus 196 ~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~-------------~~~~v~~~~ 244 (319)
T 3frx_A 196 NS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----------------AMYTLS-------------AQDEVFSLA 244 (319)
T ss_dssp CS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEEE-------------CCSCEEEEE
T ss_pred CC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------EEEEec-------------CCCcEEEEE
Confidence 88 79999999999999999999999999995421 111111 113599999
Q ss_pred EecCCeEEEEeccceEEEEEecCCCCceeEEEee------ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ------VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 427 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
|+|++.+++++.++.+..+++..... ...+.. ......+.++++++++ ++|++|+.||.|++|+
T Consensus 245 ~sp~~~~la~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~spdg--------~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 245 FSPNRYWLAAATATGIKVFSLDPQYL--VDDLRPEFAGYSKAAEPHAVSLAWSADG--------QTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ECSSSSEEEEEETTEEEEEEETTEEE--EEEECCCCTTCCGGGCCCEEEEEECTTS--------SEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEEeCcCee--eeccCccccccccCcCcceeEEEECCCC--------CEEEEeecCceEEEEE
Confidence 99999888888777777666543211 111110 1123456777776654 8999999999999999
Q ss_pred EcC
Q 003208 501 VVG 503 (839)
Q Consensus 501 ~~~ 503 (839)
+.+
T Consensus 315 ~~t 317 (319)
T 3frx_A 315 VMT 317 (319)
T ss_dssp EEE
T ss_pred Eee
Confidence 865
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=293.38 Aligned_cols=321 Identities=17% Similarity=0.247 Sum_probs=239.2
Q ss_pred eeeeEeccCCCc-ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE--EecCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSH-WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~-~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
.+++..+.+|.+ .|.+++|+| ++++||+|+.|++|+|||+.++..... +.......+.++.| +|++.+|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~---sp~g~~l~s 78 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW---SPCGNYLAS 78 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE---CTTSSEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE---CCCCCEEEE
Confidence 577888999998 999999999 999999999999999999988764432 22333445677777 689999999
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 278 (839)
|+.|+.|++|++..+ ....+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 79 ~s~D~~v~iw~~~~~-------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~ 127 (345)
T 3fm0_A 79 ASFDATTCIWKKNQD-------------------------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127 (345)
T ss_dssp EETTSCEEEEEECCC--------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCcEEEEEccCC-------------------------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence 999999999998710 2345778899999999999999999999999999
Q ss_pred cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCc--eEEEeecccCCceEE
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK--QLKMIKEHIGRGIWR 353 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~--~~~~~~~h~~~~i~~ 353 (839)
+|++||+..... ...+ ..+.+|...|.+++|+ +.+|++++.|++|++|+. .++ +...+.+|.. .|++
T Consensus 128 ~v~iwd~~~~~~-----~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~ 199 (345)
T 3fm0_A 128 SVWVWEVDEEDE-----YECV--SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWS 199 (345)
T ss_dssp CEEEEEECTTSC-----EEEE--EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred eEEEEECCCCCC-----eEEE--EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEE
Confidence 999999987543 2222 2677899999999998 579999999999999999 443 4567888988 6999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe
Q 003208 354 CLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (839)
Q Consensus 354 ~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 432 (839)
++|+|++++|++|+.|++|++|+.... .... +.+....+...
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 242 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG-------------------------------------VACSGSDPSWK 242 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEECTTCTTC-------------------------------------CCCC---CEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEeccccCCCCcc-------------------------------------ceeeccCCccc
Confidence 999999999999999999999997321 0000 00000000000
Q ss_pred EEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCC--Ccc
Q 003208 433 LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT--PQL 510 (839)
Q Consensus 433 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~--~~~ 510 (839)
.+ ....+.+...+.++++.+.. ..+++++.|+.|++|+....... +..
T Consensus 243 ~~----------------------~~~~~~h~~~v~~v~~~~~~--------~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 243 CI----------------------CTLSGFHSRTIYDIAWCQLT--------GALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp EE----------------------EEECSSCSSCEEEEEECTTT--------CCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred ee----------------------EEecCCCCCcEEEEEEecCC--------CEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 00 11112234567777776654 78999999999999999765422 222
Q ss_pred eeeeEeeccceeEEeeEEEeecCCC-eEEEEeCCCCcEEEeeecCCC
Q 003208 511 SFTFTWSAGIERQLLGTYWCKSLGH-RFIFTADPKGRLKLWQLCDPF 556 (839)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~~wd~~~~~ 556 (839)
.........+...+.. ++++|++ .+|++|+.||.|++|++...+
T Consensus 293 ~~~~~~~~~h~~~V~~--v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNC--VAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEETTSSSSCEEE--EEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEEeeecccccCcEeE--eEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 2222222344445555 5688887 599999999999999998765
No 32
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-32 Score=291.79 Aligned_cols=296 Identities=16% Similarity=0.215 Sum_probs=234.1
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
.+....+.+|.+.|++++|+| ++.+||||+.|++|++||..+++....+..+.. .+.++.+ +|++.++++|+.
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~---sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAY---APSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEE---CTTSSEEEEEST
T ss_pred cEEEEEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEE---CCCCCEEEEeeC
Confidence 456778999999999999999 999999999999999999999888887766543 3445555 689999999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
|+.+++|++....... .......+.+|.+.|.+++|+|++..|++++.|++|+
T Consensus 127 d~~i~v~~~~~~~~~~---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~ 179 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN---------------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179 (354)
T ss_dssp TSEEEEEECCCCTTCC---------------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCEEEEEEecccccc---------------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence 9999999987221110 2234556778999999999999999999999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEEC----CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEE
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~ 356 (839)
+||+.+++. . ..+.+|...|.+++|+ +++|++|+.|+.|++||+ +++++..+..|.. .|.+++|
T Consensus 180 lwd~~~~~~-----~-----~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~ 248 (354)
T 2pbi_B 180 LWDVESGQL-----L-----QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRY 248 (354)
T ss_dssp EEETTTCCE-----E-----EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEE
T ss_pred EEeCCCCeE-----E-----EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEE
Confidence 999988765 2 2778999999999986 369999999999999999 8889999999988 6999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEE
Q 003208 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (839)
Q Consensus 357 ~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 436 (839)
+|++.+|++|+.|++|++||++... .+.. +...
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~---------------------------------------~~~~--~~~~------ 281 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADR---------------------------------------EVAI--YSKE------ 281 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE---------------------------------------EEEE--ECCT------
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------EEEE--EcCC------
Confidence 9999999999999999999985310 0000 0000
Q ss_pred eccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEe
Q 003208 437 TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW 516 (839)
Q Consensus 437 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~ 516 (839)
.....+.+++++++ +.++++|+.|+.|++|++.++... ..
T Consensus 282 -------------------------~~~~~~~~~~~s~~--------g~~l~~g~~d~~i~vwd~~~~~~~-------~~ 321 (354)
T 2pbi_B 282 -------------------------SIIFGASSVDFSLS--------GRLLFAGYNDYTINVWDVLKGSRV-------SI 321 (354)
T ss_dssp -------------------------TCCSCEEEEEECTT--------SSEEEEEETTSCEEEEETTTCSEE-------EE
T ss_pred -------------------------CcccceeEEEEeCC--------CCEEEEEECCCcEEEEECCCCceE-------EE
Confidence 00112344555443 378999999999999998665421 11
Q ss_pred eccceeEEeeEEEeecCCCeEEEEeCCCCcEEEee
Q 003208 517 SAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (839)
Q Consensus 517 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd 551 (839)
...+...+.. ++++|++++|++|+.|+.|++|+
T Consensus 322 l~~h~~~v~~--l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 LFGHENRVST--LRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCCSSCEEE--EEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCcEEE--EEECCCCCEEEEEcCCCCEEecC
Confidence 2234444544 57899999999999999999996
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-33 Score=293.86 Aligned_cols=282 Identities=13% Similarity=0.202 Sum_probs=219.8
Q ss_pred eeeeeeEEEE-----ecCC-CCCCCcceEEEee-CCeeEEEECCCC-------eeeeEEeeecCceEEeEEecccccccC
Q 003208 16 YLGEISALCF-----VHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQVFHGIRLHGISCNFINCTEG 81 (839)
Q Consensus 16 ~~~~Vt~l~f-----~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~~ 81 (839)
|.++|++++| + + + +++|++|+ |++|+|||+.++ .....+..|.. .|.+++|+
T Consensus 20 H~~~V~~~~~~~s~~~--~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~------- 85 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKE--NED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALS------- 85 (343)
T ss_dssp CSSCEEEEEECCCSST--TCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEEC-------
T ss_pred chhhhhheeeEEEeec--CCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEEC-------
Confidence 8899999999 5 5 5 78888888 899999998753 44556666555 69999999
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEE
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~v 161 (839)
|++. .+++++.|++|++||+.. .+.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++
T Consensus 86 ~~~~---~l~s~s~D~~v~lwd~~~---------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~~~d~~i~~ 144 (343)
T 2xzm_R 86 QENC---FAISSSWDKTLRLWDLRT---------------GTTYKRFVGHQSEVYSVAFSP---DNRQILSAGAEREIKL 144 (343)
T ss_dssp SSTT---EEEEEETTSEEEEEETTS---------------SCEEEEEECCCSCEEEEEECS---STTEEEEEETTSCEEE
T ss_pred CCCC---EEEEEcCCCcEEEEECCC---------------CcEEEEEcCCCCcEEEEEECC---CCCEEEEEcCCCEEEE
Confidence 7773 556667799999999975 456778889999999999999 9999999999999999
Q ss_pred EecCCCceEEEEe--cCCceeEEEEeeccCC-------ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 162 WDISNSSIILEVH--SPERCLLYSMKLWGDN-------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 162 wd~~~~~~~~~~~--~~~~~~~~s~~~~~~~-------~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
||+... ...... ......+.++.+.... +.+.++++++.|+.|++||..
T Consensus 145 wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------------------- 202 (343)
T 2xzm_R 145 WNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--------------------- 202 (343)
T ss_dssp EESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---------------------
T ss_pred EeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---------------------
Confidence 999743 333222 1223345566552211 123789999999999999943
Q ss_pred CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
......+.+|...|.+++|+|++++|++++.|+.|++||+...... . ....+...|.
T Consensus 203 -------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~----~------~~~~~~~~v~ 259 (343)
T 2xzm_R 203 -------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP----Q------REFDAGSTIN 259 (343)
T ss_dssp -------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC----S------EEEECSSCEE
T ss_pred -------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc----c------eeecCCCcEE
Confidence 4556678899999999999999999999999999999999543321 1 2333556799
Q ss_pred EeEECC-CEEEEEeCCCeEEEEcC-CCceEE--Eee-----------cccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 313 DCCLTD-SFIITAGEDCTCRVWGS-DGKQLK--MIK-----------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 313 ~~~~~~-~~l~s~~~dg~i~vw~~-~~~~~~--~~~-----------~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+++|++ ..+++++.|+.+++|++ +++... .+. +|.. .|.+++|+|++++|++|+.||.|++|++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP-QCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC-CEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC-ceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 999993 34555667889999998 444322 333 4655 6999999999999999999999999998
Q ss_pred C
Q 003208 378 Q 378 (839)
Q Consensus 378 ~ 378 (839)
+
T Consensus 339 ~ 339 (343)
T 2xzm_R 339 E 339 (343)
T ss_dssp E
T ss_pred E
Confidence 4
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=289.03 Aligned_cols=311 Identities=19% Similarity=0.270 Sum_probs=228.1
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC--ceEEEEe-cCCceeEEEEeeccCCccceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVH-SPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~--~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
.+++..+.+|.+.|++++|+| + +||+|+.|++|++||+..+ ..+..+. ..+...+.++.| +|++.+|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~---sp~~~~las 75 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW---RPHTSLLAA 75 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE---CTTSSEEEE
T ss_pred cccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE---CCCCCEEEE
Confidence 567788999999999999998 6 9999999999999999875 3445552 324455777777 688999999
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 278 (839)
|+.|+.|++|++....... ...+.+..+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 76 ~s~D~~v~iw~~~~~~~~~--------------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRT--------------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp EETTSCEEEEEC---------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS
T ss_pred EeCCCcEEEEEcccCcCcc--------------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999986211000 02356677899999999999999999999999999
Q ss_pred cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CC--ceEEEeecccCCceEE
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIKEHIGRGIWR 353 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~--~~~~~~~~h~~~~i~~ 353 (839)
+|++||++..... .+.+ ..+.+|...|.+++|+ +.+|++++.|++|++||. .+ +++..+.+|.. .|++
T Consensus 130 ~v~iwd~~~~~~~----~~~~--~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~ 202 (330)
T 2hes_X 130 SVWIWETDESGEE----YECI--SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWS 202 (330)
T ss_dssp CEEEEECCTTCCC----CEEE--EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred EEEEEeccCCCCC----eEEE--EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEE
Confidence 9999999543210 2222 2678899999999998 589999999999999998 44 57888999998 6999
Q ss_pred EEEccC--CCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeecc-CCCcceEEEEEecC
Q 003208 354 CLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD-SKSEYVRCLHLTSE 430 (839)
Q Consensus 354 ~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 430 (839)
++|+|+ +.+|++|+.|++|++|++...... ....+. ...... .|...|.+++|+++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~-------------~~~~~~--------~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED-------------DQQEWV--------CEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTT-------------SCEEEE--------EEEECCSCCSSCEEEEEECTT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCcc-------------ccceeE--------EeeecccccccceEEEEEcCC
Confidence 999998 678999999999999998542110 000000 011111 25678999999988
Q ss_pred CeEEEEeccceEEEEEecCCCCceeEEEe---eecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcC
Q 003208 431 DTLYIATNHGYLYHTKLCDMDSVNWNKIL---QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (839)
Q Consensus 431 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~ 503 (839)
+.+++++.+|.+.+|+.... .|.... ..+....+.++++++. .++.+|++|+.||.|++|+++.
T Consensus 262 ~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~h~~~~v~~v~~~~~------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 GLIASVGADGVLAVYEEVDG---EWKVFAKRALCHGVYEINVVKWLEL------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEETTSCEEEEEEETT---EEEEEEEESCTTTTSCEEEEEEC-----------CCEEEEETTSEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEEcCCC---ceEEEeccccccccceEEEEEEecC------CCceEEEEecCCCcEEEEEecc
Confidence 88888999999988776432 232222 2333337888888662 1347899999999999999753
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-32 Score=289.72 Aligned_cols=296 Identities=13% Similarity=0.181 Sum_probs=233.1
Q ss_pred eeeeEeccCCCcceEEEEE-----eeccCCCcEEEEEeCCCcEEEEecCCC-------ceEEEEecCCceeEEEEeeccC
Q 003208 122 LSLVQSLPRLSHWVFDVCF-----LKVCNGNRSLAIGCSDNSIRVWDISNS-------SIILEVHSPERCLLYSMKLWGD 189 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~-----~~~~~~~~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~s~~~~~~ 189 (839)
.++...+.+|.++|++++| ++ +++.+||+|+.|++|++||+.+. .....+.++.. .+.++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~--- 84 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLAL--- 84 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEE---
T ss_pred eeeeeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEE---
Confidence 5667789999999999999 43 27889999999999999999753 23445555543 4666666
Q ss_pred CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC
Q 003208 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (839)
Q Consensus 190 ~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 269 (839)
++++.++++|+.|+.|++||++ +++.+..+.+|...|.+++|+|+++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~ 131 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLR---------------------------------TGTTYKRFVGHQSEVYSVAFSPDNR 131 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETT---------------------------------SSCEEEEEECCCSCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCcEEEEECC---------------------------------CCcEEEEEcCCCCcEEEEEECCCCC
Confidence 6889999999999999999998 6777888999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC------------CEEEEEeCCCeEEEEcCCC
Q 003208 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------------SFIITAGEDCTCRVWGSDG 337 (839)
Q Consensus 270 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------~~l~s~~~dg~i~vw~~~~ 337 (839)
+|++++.|++|++||+..... ... ....+|...|.+++|++ .++++++.|+.|++||..+
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGECK------FSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203 (343)
T ss_dssp EEEEEETTSCEEEEESSSCEE------EEC--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCEEEEEeccCCce------eee--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC
Confidence 999999999999999974322 100 12337889999999983 5899999999999999888
Q ss_pred ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeecc
Q 003208 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (839)
Q Consensus 338 ~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (839)
+....+..|.. .|.+++|+|++++|++|+.||.|++||+.. .... ...
T Consensus 204 ~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~-----------------~~~------------- 252 (343)
T 2xzm_R 204 QIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ-----------------REF------------- 252 (343)
T ss_dssp EEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS-----------------EEE-------------
T ss_pred ceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc-----------------eee-------------
Confidence 88888999988 699999999999999999999999999843 1110 000
Q ss_pred CCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEee---------ecCCCceEEeeecCCCCCCCCCCCcEE
Q 003208 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ---------VSEGMPIICMDLLSNEPKYPCGIDDWV 487 (839)
Q Consensus 417 ~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~l 487 (839)
.+...|.+++|+|++.+++++.++.+.+|++..........+.. ..+...+.++++++++ .+|
T Consensus 253 ~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l 324 (343)
T 2xzm_R 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG--------KKL 324 (343)
T ss_dssp ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS--------CCE
T ss_pred cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC--------CeE
Confidence 01235999999999999988888889888775443221101100 0234567888887654 789
Q ss_pred EEeCCCccEEEEEEcC
Q 003208 488 ALGDGKGNMTIVRVVG 503 (839)
Q Consensus 488 ~~g~~dg~i~l~~~~~ 503 (839)
++|+.||.|++|++++
T Consensus 325 ~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEecCCceEEEEEEEc
Confidence 9999999999999865
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=303.06 Aligned_cols=337 Identities=14% Similarity=0.113 Sum_probs=243.0
Q ss_pred cCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEec----CCCc------eEEEEecC---------CceeEEEEeecc
Q 003208 129 PRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDI----SNSS------IILEVHSP---------ERCLLYSMKLWG 188 (839)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~----~~~~------~~~~~~~~---------~~~~~~s~~~~~ 188 (839)
..|.+.|++++|+| ++. +||+|+.|+.|++||+ .+++ ....+..+ ....+.++.+
T Consensus 42 ~~~~~~v~~~~~s~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 116 (425)
T 1r5m_A 42 IVKLDNIVSSTWNP---LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW-- 116 (425)
T ss_dssp EEECSCCSEEEECS---SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE--
T ss_pred eeccCceEEEEECC---CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE--
Confidence 45668999999999 999 9999999999999999 8887 44444431 2335677776
Q ss_pred CCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC
Q 003208 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (839)
Q Consensus 189 ~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 268 (839)
++++.+|++|+.||.|++|+ . ....+..+.+|...|.+++|+|++
T Consensus 117 -s~~~~~l~~~~~dg~i~i~~-~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 117 -SHDGNSIVTGVENGELRLWN-K---------------------------------TGALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp -CTTSSEEEEEETTSCEEEEE-T---------------------------------TSCEEEEECCCCSCEEEEEECTTS
T ss_pred -cCCCCEEEEEeCCCeEEEEe-C---------------------------------CCCeeeeccCCCccEEEEEECCCC
Confidence 68899999999999999999 3 466777888999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc---------------eEEeEEC-CCEEEEEeCCCeEEE
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---------------VWDCCLT-DSFIITAGEDCTCRV 332 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~-~~~l~s~~~dg~i~v 332 (839)
++|++++.|+.|++||+.+... .. .+..+... +.++.|+ +..+++++.|+.|++
T Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 231 (425)
T 1r5m_A 162 THIISMDVENVTILWNVISGTV-----MQ-----HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV 231 (425)
T ss_dssp SEEEEEETTCCEEEEETTTTEE-----EE-----EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEE
T ss_pred CEEEEEecCCeEEEEECCCCcE-----EE-----EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEE
Confidence 9999999999999999987654 22 33444444 8888888 788999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCcc
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (839)
||+ .++.+..+..|.. +|.+++|+|++++|++++.||.|++||++.. ....+
T Consensus 232 ~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------- 285 (425)
T 1r5m_A 232 YQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF------------------------- 285 (425)
T ss_dssp EETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE-------------------------
T ss_pred EEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe-------------------------
Confidence 999 7788888888888 7999999999999999999999999998542 11111
Q ss_pred ceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEe
Q 003208 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (839)
Q Consensus 411 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g 490 (839)
..+...|.+++|+|++ .++++
T Consensus 286 -----~~~~~~i~~~~~~~~~------------------------------------------------------~l~~~ 306 (425)
T 1r5m_A 286 -----YGHSQSIVSASWVGDD------------------------------------------------------KVISC 306 (425)
T ss_dssp -----CCCSSCEEEEEEETTT------------------------------------------------------EEEEE
T ss_pred -----cCCCccEEEEEECCCC------------------------------------------------------EEEEE
Confidence 1122345555555444 44455
Q ss_pred CCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccc------cCC
Q 003208 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY------ESS 564 (839)
Q Consensus 491 ~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~------~~~ 564 (839)
+.||.|++|++.+.+... .. ..+...+.. +++++++++|++++.||.|++||+......... ...
T Consensus 307 ~~d~~i~i~d~~~~~~~~----~~---~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 377 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNTLLA----LS---IVDGVPIFA--GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377 (425)
T ss_dssp ETTSEEEEEETTTTEEEE----EE---ECTTCCEEE--EEECTTSSEEEEEETTSCEEEEECHHHHC-------------
T ss_pred eCCCcEEEEECCCCcEeE----ec---ccCCccEEE--EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccccc
Confidence 555666666654432110 00 011222323 568899999999999999999999865310000 000
Q ss_pred ccceeeeeeccccccCc--eEEEEeeecCCCEEEEecCCccEEEEecc
Q 003208 565 KTNNVFLVAEFSSCFGA--RIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 565 ~~~~~~~~~~~~~~h~~--~I~~l~~s~~~~~la~gs~dg~i~iw~~~ 610 (839)
......+...+ ..|.. .|++++|+|++++|++|+.||.|++|+++
T Consensus 378 ~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 378 NPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred Ccccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 00011122222 25655 99999999999999999999999999986
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-32 Score=287.80 Aligned_cols=284 Identities=17% Similarity=0.275 Sum_probs=229.9
Q ss_pred eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc
Q 003208 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (839)
Q Consensus 55 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 134 (839)
+...+++.|.. +|.+++|+ |+++ .+++++.|++|+|||+.. .+.+..+..|...
T Consensus 46 ~~~~~l~gH~~-~v~~~~~s-------~d~~---~l~s~s~Dg~v~iWd~~~---------------~~~~~~~~~~~~~ 99 (340)
T 1got_B 46 RTRRTLRGHLA-KIYAMHWG-------TDSR---LLLSASQDGKLIIWDSYT---------------TNKVHAIPLRSSW 99 (340)
T ss_dssp CEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEETTTEEEEEETTT---------------CCEEEEEECSSSC
T ss_pred hhheeecCCCC-ceEEEEEC-------CCCC---EEEEEeCCCcEEEEECCC---------------CCcceEeecCCcc
Confidence 45567777655 79999999 8884 566667799999999875 4567778899999
Q ss_pred eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc----eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
|.+++|+| ++++|++|+.|+.|++||+.+.. ....+..+.. .+.++.+ .+++ .+++++.|+.|++||+
T Consensus 100 v~~~~~s~---~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~-~v~~~~~---~~~~-~l~s~s~d~~i~~wd~ 171 (340)
T 1got_B 100 VMTCAYAP---SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRF---LDDN-QIVTSSGDTTCALWDI 171 (340)
T ss_dssp EEEEEECT---TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS-CEEEEEE---EETT-EEEEEETTSCEEEEET
T ss_pred EEEEEECC---CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc-cEEEEEE---CCCC-cEEEEECCCcEEEEEC
Confidence 99999999 99999999999999999998653 3344545443 3455555 2444 5899999999999999
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
. +.+.+..+.+|.+.|.+++|+|+++++++++.|++|++||+++...
T Consensus 172 ~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~ 218 (340)
T 1got_B 172 E---------------------------------TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218 (340)
T ss_dssp T---------------------------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred C---------------------------------CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence 8 7778888999999999999999999999999999999999988654
Q ss_pred CCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeeccc-CCceEEEEEccCCCEEEEE
Q 003208 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTA 366 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~-~~~i~~~~~~~~~~~l~t~ 366 (839)
. ..+.+|...|.+++|+ +++|++++.|++|++||+ .++.+..+..+. ..+|.+++|+|++++|++|
T Consensus 219 -----~-----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 219 -----R-----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp -----E-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred -----E-----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 2 3678899999999998 689999999999999999 666666654322 1259999999999999999
Q ss_pred eCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEE
Q 003208 367 GFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYH 444 (839)
Q Consensus 367 ~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~ 444 (839)
+.||.|++||+.. ..+ ..+.+|...|.+++|+|++. ++.++.+|.|.+
T Consensus 289 ~~d~~i~vwd~~~~~~~------------------------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 289 YDDFNCNVWDALKADRA------------------------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp ETTSEEEEEETTTCCEE------------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCCCeEEEEEcccCcEe------------------------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 9999999999844 211 12335567899999999986 455567888865
Q ss_pred E
Q 003208 445 T 445 (839)
Q Consensus 445 ~ 445 (839)
|
T Consensus 339 W 339 (340)
T 1got_B 339 W 339 (340)
T ss_dssp E
T ss_pred c
Confidence 4
No 38
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=293.85 Aligned_cols=257 Identities=16% Similarity=0.117 Sum_probs=206.8
Q ss_pred CCcCccccccCCC------------------ceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEee-
Q 003208 2 GKKDLSEWRLDVG------------------QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV- 62 (839)
Q Consensus 2 ~d~~i~~w~~~~~------------------~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~- 62 (839)
.|+++++||.... ++..+|++++|+ |+ +.+++++.||.|+|||+.+++.+..++.
T Consensus 49 sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~d----~~l~~~s~dg~v~lWd~~~~~~~~~~~~~ 122 (344)
T 4gqb_B 49 SSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV--GE----RGILVASDSGAVELWELDENETLIVSKFC 122 (344)
T ss_dssp ECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE--TT----TEEEEEETTSEEEEEEECTTSSCEEEEEE
T ss_pred eCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe--CC----CeEEEEECCCEEEEEeccCCCceeEeecc
Confidence 3778999984311 034579999999 88 6666555599999999999876554431
Q ss_pred --ecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE
Q 003208 63 --FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (839)
Q Consensus 63 --~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (839)
.|...|.+++|+ |+|+ .+++++.|++|++||+.. .+++..+.+|.+.|++++|
T Consensus 123 ~~~H~~~V~~v~~s-------pdg~---~l~sgs~d~~i~iwd~~~---------------~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 123 KYEHDDIVSTVSVL-------SSGT---QAVSGSKDICIKVWDLAQ---------------QVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp EECCSSCEEEEEEC-------TTSS---EEEEEETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEE
T ss_pred ccCCCCCEEEEEEC-------CCCC---EEEEEeCCCeEEEEECCC---------------CcEEEEEcCcCCceEEEEe
Confidence 244579999999 8884 566667799999999975 5678899999999999999
Q ss_pred eeccCCC-cEEEEEeCCCcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccC
Q 003208 141 LKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 141 ~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~ 218 (839)
+| ++ .+|++|+.|++|++||+++++....+.... ...+.++.+. +.++.+|++|+.||.|++||++
T Consensus 178 ~~---~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~l~sg~~dg~v~~wd~~------- 245 (344)
T 4gqb_B 178 SP---HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH--PQQSEVFVFGDENGTVSLVDTK------- 245 (344)
T ss_dssp CS---SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC--SSCTTEEEEEETTSEEEEEESC-------
T ss_pred cC---CCCCceeeeccccccccccccccceeeeeecceeeccceeeeec--CCCCcceEEeccCCcEEEEECC-------
Confidence 99 76 578999999999999999999888775332 3335566652 3356789999999999999998
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCce
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 297 (839)
..+++..+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+++.
T Consensus 246 --------------------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~------- 292 (344)
T 4gqb_B 246 --------------------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL------- 292 (344)
T ss_dssp --------------------------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-------
T ss_pred --------------------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-------
Confidence 778888999999999999999998 5799999999999999988655
Q ss_pred eeeceEeeccccceEEeEEC--C-CEEEEEeCCCeEEEEcCCCc
Q 003208 298 EVGSSVLYGHNARVWDCCLT--D-SFIITAGEDCTCRVWGSDGK 338 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~~~~ 338 (839)
..+.+|...|++++|+ + .+|++++.|++|++|++..+
T Consensus 293 ----~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 293 ----FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ----EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ----EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 3678999999999998 3 47889999999999999443
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5e-32 Score=286.31 Aligned_cols=320 Identities=13% Similarity=0.154 Sum_probs=252.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
+.++|.+++|+ || +++++++. ++.+.+|+............ +..+|.+++|+ |++ .+++++
T Consensus 8 ~~~~v~~~~~s--~d----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~-------~~~----~~l~~~ 69 (337)
T 1gxr_A 8 GSKPAYSFHVT--AD----GQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS-------NPT----RHVYTG 69 (337)
T ss_dssp EEEECCEEEEC--SS----SCEEECCCCTTSSSSTTCCSEEEEEEEEC-CSSCCCEEEEC-------SSS----SEEEEE
T ss_pred cCCceeEEEEC--CC----CCEEEeecCCCcEeccccCCccccceecc-CCCceEEEEEe-------cCC----cEEEEc
Confidence 56789999999 99 88888776 56666666554443333333 44579999999 887 667777
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEe--ccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc--eE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--II 170 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~--~~ 170 (839)
+++.|++|++..... ...... ..+|...|.+++|+| ++++|++++.|+.|++||+.+++ ..
T Consensus 70 ~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 70 GKGCVKVWDISHPGN------------KSPVSQLDCLNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp CBSEEEEEETTSTTC------------CSCSEEEECSCTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCCeEEEEECCCCCc------------eeeeecccccCCCCcEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCCccee
Confidence 799999999976431 112222 337999999999999 99999999999999999999877 34
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
..+..+. ..+.++.+ ++++.++++++.||.|++||+. ..+.+.
T Consensus 135 ~~~~~~~-~~i~~~~~---~~~~~~l~~~~~dg~v~~~d~~---------------------------------~~~~~~ 177 (337)
T 1gxr_A 135 AELTSSA-PACYALAI---SPDSKVCFSCCSDGNIAVWDLH---------------------------------NQTLVR 177 (337)
T ss_dssp EEEECSS-SCEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEE
T ss_pred eecccCC-CceEEEEE---CCCCCEEEEEeCCCcEEEEeCC---------------------------------CCceee
Confidence 4444443 33556666 5789999999999999999998 677788
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 328 (839)
.+.+|...|.+++|+|++++|++++.|+.|++||+++.+. .....|...+.+++|+ +.++++++.|+
T Consensus 178 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 246 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----------LQQHDFTSQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------EEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----------EeeecCCCceEEEEECCCCCEEEEEcCCC
Confidence 8899999999999999999999999999999999988655 2334578889999998 68999999999
Q ss_pred eEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCC
Q 003208 329 TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (839)
Q Consensus 329 ~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (839)
.|++||+.......+..|.. +|.+++|+|++++|++++.||.|++|+++.... +..
T Consensus 247 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------~~~------ 302 (337)
T 1gxr_A 247 NVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----------------IFQ------ 302 (337)
T ss_dssp CEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------EEE------
T ss_pred cEEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-----------------EEE------
Confidence 99999995555567778887 699999999999999999999999999854211 111
Q ss_pred ccceeeccCCCcceEEEEEecCCeE-EEEeccceEEEEEe
Q 003208 409 SEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKL 447 (839)
Q Consensus 409 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~g~i~~~~~ 447 (839)
..+...+.+++|+|++.+ ++++.+|.+..|++
T Consensus 303 -------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 -------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 123356999999998854 55677888887765
No 40
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-31 Score=296.21 Aligned_cols=309 Identities=17% Similarity=0.269 Sum_probs=247.2
Q ss_pred eeee-eeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGE-ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~-Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
|..+ ++|++|. +.++++|+ |+.|++||+.+++.+.++..|.. .|.+++|+ |++ .++++
T Consensus 120 h~~~v~~~~~~~--------~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~~-------~~~----~l~s~ 179 (464)
T 3v7d_B 120 HMTSVITCLQFE--------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYA-------HGG----ILVSG 179 (464)
T ss_dssp CSSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC-------STT----EEEEE
T ss_pred CCCCcEEEEEEC--------CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEEc-------CCC----EEEEE
Confidence 5555 5788877 45888877 89999999999999999997665 79999999 776 77777
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE---
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--- 170 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~--- 170 (839)
+.|++|++||+.. .+.+..+.+|.+.|.+++|++. +++.+|++|+.|+.|++||+.+....
T Consensus 180 s~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~l~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 180 STDRTVRVWDIKK---------------GCCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEEEES-SSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred eCCCCEEEEECCC---------------CcEEEEECCCCCccEEEEEecC-CCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 8899999999975 5677888999999999999851 16789999999999999999876533
Q ss_pred --------------------EEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCC
Q 003208 171 --------------------LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 171 --------------------~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 230 (839)
..+..+.. .+.++ ++++.++++|+.||.|++||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-----~~~~~~l~~~~~d~~i~vwd~~------------------- 298 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV-----SGHGNIVVSGSYDNTLIVWDVA------------------- 298 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSS-CEEEE-----EEETTEEEEEETTSCEEEEETT-------------------
T ss_pred cccCCcceEeeccCCCeEEEEEccCccc-eEEEE-----cCCCCEEEEEeCCCeEEEEECC-------------------
Confidence 22333322 23333 3678899999999999999998
Q ss_pred CCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc
Q 003208 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (839)
..+.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++. . ..+.+|...
T Consensus 299 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----~-----~~~~~h~~~ 354 (464)
T 3v7d_B 299 --------------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----M-----YTLQGHTAL 354 (464)
T ss_dssp --------------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-----E-----EEECCCSSC
T ss_pred --------------CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----E-----EEEeCCCCc
Confidence 7788888999999999999999999999999999999999988655 2 377889999
Q ss_pred eEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCC
Q 003208 311 VWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESH 388 (839)
Q Consensus 311 v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~ 388 (839)
|.+++|++.++++++.||.|++||+ ++....... +.. .+..+++++++.++++|+ ||.|++||++. +.++.+
T Consensus 355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~--- 428 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN--- 428 (464)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTT-CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC---
T ss_pred EEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCC-CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh---
Confidence 9999999999999999999999999 555544443 333 577889999999999998 89999999954 222210
Q ss_pred CcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceE
Q 003208 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (839)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i 442 (839)
...+...|.+++|+ ++.+++++.++..
T Consensus 429 --------------------------~~~~~~~v~~v~~~-~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 429 --------------------------ILKDADQIWSVNFK-GKTLVAAVEKDGQ 455 (464)
T ss_dssp --------------------------TTTTCSEEEEEEEE-TTEEEEEEEETTE
T ss_pred --------------------------hccCCCcEEEEEec-CCEEEEEEEeCCe
Confidence 11234579999998 4466665544433
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7e-32 Score=285.67 Aligned_cols=284 Identities=15% Similarity=0.219 Sum_probs=229.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-----eeeEEeeecCceEEeEEecccccccCCCccceee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 89 (839)
|.++|++|+|+ |+ .+++|++|+ |++|+|||+.+++ .+..++.|.. .|.+++|+ |+++ .
T Consensus 37 H~~~V~~v~~s--p~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~s-------~dg~---~ 100 (340)
T 4aow_A 37 HNGWVTQIATT--PQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVIS-------SDGQ---F 100 (340)
T ss_dssp CSSCEEEEEEC--TT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEEC-------TTSS---E
T ss_pred ccCCEEEEEEe--CC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEEC-------CCCC---E
Confidence 88999999999 97 457888887 9999999987654 4555665544 79999999 8884 5
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
+++++.|+.|++|+... .........+...+..+.+++ ++.+|++|+.|+.+++||......
T Consensus 101 l~s~~~d~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTT---------------GTTTRRFVGHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEcccccceEEeecc---------------cceeeeecCCCCceeEEEEee---cCccceeecCCCeEEEEEeCCCce
Confidence 66667799999999875 345556667888899999999 999999999999999999977655
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
...........+..+.+. ......++++++.|+.|++||+. ..+.+
T Consensus 163 ~~~~~~~~~~~v~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~---------------------------------~~~~~ 208 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFS-PNSSNPIIVSCGWDKLVKVWNLA---------------------------------NCKLK 208 (340)
T ss_dssp EEECSSSCSSCEEEEEEC-SCSSSCEEEEEETTSCEEEEETT---------------------------------TTEEE
T ss_pred EEEEeccccCcccceEEc-cCCCCcEEEEEcCCCEEEEEECC---------------------------------CCcee
Confidence 444333333334444442 23456788999999999999998 77788
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCC
Q 003208 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDC 328 (839)
Q Consensus 250 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg 328 (839)
..+.+|.+.|.+++|+|++++|++++.|+.|++||+++... + ....+...|.++.|+ +..+++++.|+
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~------~~~~~~~~v~~~~~~~~~~~~~~~~d~ 277 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----L------YTLDGGDIINALCFSPNRYWLCAATGP 277 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----E------EEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----e------eeecCCceEEeeecCCCCceeeccCCC
Confidence 88999999999999999999999999999999999988655 1 333455689999998 56788888999
Q ss_pred eEEEEcC-CCceEEEee---------cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 329 TCRVWGS-DGKQLKMIK---------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~---------~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.|++||+ .+..+..+. .|.. .|++++|+|++++|++|+.||.|++||++.
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 9999999 454444443 4666 699999999999999999999999999853
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.2e-33 Score=298.47 Aligned_cols=311 Identities=17% Similarity=0.236 Sum_probs=238.9
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
..+...+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+++....+..+... +.++.+ +|++.+|++|+.
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~---s~~g~~las~~~ 128 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAF---APNGQSVACGGL 128 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEE---CTTSSEEEECCS
T ss_pred eEEeecccccccEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEE---CCCCCEEEEeeC
Confidence 567788999999999999999 9999999999999999999999998888766543 444555 689999999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i 280 (839)
|+.|++|++....... ........+.+|.+.|.++.|+|++ ..|++|+.|++|
T Consensus 129 d~~v~iw~~~~~~~~~--------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i 182 (380)
T 3iz6_a 129 DSACSIFNLSSQADRD--------------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182 (380)
T ss_dssp SSCCEEEECCCCSSCC--------------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCE
T ss_pred CCcEEEEECCCCcccc--------------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcE
Confidence 9999999987221110 0122344578999999999999964 579999999999
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEEEE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCL 355 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~~~ 355 (839)
++||+.++.. ...+......+|...|.++.|. ++++++|+.|++|++||+ .++.+..+.+|.+ .|.+++
T Consensus 183 ~~wd~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~ 256 (380)
T 3iz6_a 183 VLWDVTTGQR-----ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVK 256 (380)
T ss_dssp EEECTTTCCE-----EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEEE
T ss_pred EEEEcCCCcE-----EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEEE
Confidence 9999998765 3322211236799999999996 589999999999999998 4577888999998 699999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEE
Q 003208 356 YDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY 434 (839)
Q Consensus 356 ~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 434 (839)
|+|++++|++|+.||+|++||++. ..++.+..+. . ....+...|++++|+|++.++
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-----------------~------~~~~~~~~v~~~~~s~~g~~l 313 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-----------------D------RNDNELPIVTSVAFSISGRLL 313 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-----------------S------SSCCSSCSCSEEEECSSSSEE
T ss_pred EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-----------------c------ccccccCceEEEEECCCCCEE
Confidence 999999999999999999999964 2222221111 0 001122358899999998655
Q ss_pred -EEeccceEEEEEecCCCCceeEEE--eeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 435 -IATNHGYLYHTKLCDMDSVNWNKI--LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 435 -~~~~~g~i~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
+++.+|.+..|++....... .+ ....+...+.++++++++ .+|++|+.||.|++|++...
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg--------~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMVL--NLGTLQNSHEGRISCLGLSSDG--------SALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECTTSCEEEEETTTCCEEE--EECCSCSSCCCCCCEEEECSSS--------SEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCEEEEECCCCceEE--EEecccCCCCCceEEEEECCCC--------CEEEEeeCCCCEEEEecCCC
Confidence 55678999887765433211 11 112346788999887764 89999999999999998764
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.5e-33 Score=302.12 Aligned_cols=327 Identities=11% Similarity=0.104 Sum_probs=251.0
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
..+++++|+ |+ +++|++|. |+.|++||..+++....+..+ ..+....++ ++++ .+++++.|
T Consensus 57 ~~~~~~~~s--~~----g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~-------~~~~---~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFE--KV----GSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAK-------LQMR---RFILGTTE 118 (420)
T ss_dssp BCCTTCEEE--EE----ETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEEC-------SSSC---EEEEEETT
T ss_pred ccccceeee--ec----CCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEe-------cCCC---EEEEEECC
Confidence 346689999 99 77788777 999999999988776666543 234444667 7773 55566679
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
+.|++||+.. .+....+.+|.+.|++++|+| ++++|++|+.|+.|++||+.+++.+..+..+
T Consensus 119 g~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 119 GDIKVLDSNF---------------NLQREIDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp SCEEEECTTS---------------CEEEEETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred CCEEEEeCCC---------------cceeeecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 9999999874 456777889999999999999 9999999999999999999999988888765
Q ss_pred CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec--
Q 003208 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-- 254 (839)
Q Consensus 177 ~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (839)
.. .+.++.+ ++++.+|++++.|+.|++||++ ..+.+..+..
T Consensus 181 ~~-~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~ 223 (420)
T 3vl1_A 181 RA-TVTDIAI---IDRGRNVLSASLDGTIRLWECG---------------------------------TGTTIHTFNRKE 223 (420)
T ss_dssp SS-CEEEEEE---ETTTTEEEEEETTSCEEEEETT---------------------------------TTEEEEEECBTT
T ss_pred CC-cEEEEEE---cCCCCEEEEEcCCCcEEEeECC---------------------------------CCceeEEeecCC
Confidence 54 3666666 5789999999999999999998 3333333332
Q ss_pred ----------------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 255 ----------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 255 ----------------------h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
|...+.+++|+|++++|++++.|+.|++||+++... .. .....|...|.
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~----~~~~~~~~~v~ 294 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TI----QLPSKFTCSCN 294 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EE----EECCTTSSCEE
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eE----EcccccCCCce
Confidence 345666677789999999999999999999988654 22 13446889999
Q ss_pred EeEECC--C-EEEEEeCCCeEEEEcC-CC-ceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcC
Q 003208 313 DCCLTD--S-FIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLE 386 (839)
Q Consensus 313 ~~~~~~--~-~l~s~~~dg~i~vw~~-~~-~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~ 386 (839)
+++|++ . ++++++.||.|++||+ ++ .++..+..|...+|.++.+ +++.+|++++.||.|++|++... ....+.
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 999993 4 9999999999999999 54 4477787755557888855 57789999999999999998541 111000
Q ss_pred CCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe----EEEEeccceEEEEEec
Q 003208 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT----LYIATNHGYLYHTKLC 448 (839)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~g~i~~~~~~ 448 (839)
.. ........+...|.+++|+|++. +++++.+|.+..|++.
T Consensus 374 ---------------~~------~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 374 ---------------EF------ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp ---------------CT------TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ---------------ec------cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 00 00111234556799999999887 8888889988777654
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-31 Score=280.80 Aligned_cols=279 Identities=13% Similarity=0.193 Sum_probs=235.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEee----ecCceEEeEEecccccccCCCccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
|.++|++++|+ |+ +++++++.++.|++||+.+++....+.. .+...|.+++|+ |+++ .++
T Consensus 50 h~~~v~~~~~~--~~----~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~---~l~ 113 (337)
T 1gxr_A 50 HGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-------PDGC---TLI 113 (337)
T ss_dssp CSSCCCEEEEC--SS----SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-------TTSS---EEE
T ss_pred CCCceEEEEEe--cC----CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-------CCCC---EEE
Confidence 77899999999 99 8899998899999999988764333321 244579999999 8873 566
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+++.++.|++|++.... ......+..|...|.+++|+| ++++|++++.|+.|++||+.+++.+.
T Consensus 114 ~~~~d~~i~~~d~~~~~-------------~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEESSSEEEEEECCCC---------------EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEECCCCC-------------cceeeecccCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceee
Confidence 66679999999998643 346677889999999999999 99999999999999999999999888
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (839)
.+..+.. .+.++.+ ++++.+|++++.||.|++||++ ..+.+..
T Consensus 178 ~~~~~~~-~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~---------------------------------~~~~~~~ 220 (337)
T 1gxr_A 178 QFQGHTD-GASCIDI---SNDGTKLWTGGLDNTVRSWDLR---------------------------------EGRQLQQ 220 (337)
T ss_dssp EECCCSS-CEEEEEE---CTTSSEEEEEETTSEEEEEETT---------------------------------TTEEEEE
T ss_pred eeecccC-ceEEEEE---CCCCCEEEEEecCCcEEEEECC---------------------------------CCceEee
Confidence 8876544 3556666 6789999999999999999998 5555555
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCe
Q 003208 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (839)
Q Consensus 252 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 329 (839)
+ .|...+.+++|+|+++++++++.|+.|++||+..... .....|...|.+++|+ ++++++++.||.
T Consensus 221 ~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 221 H-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred e-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 4 4788999999999999999999999999999988655 3677899999999998 689999999999
Q ss_pred EEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 330 i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
|++|++ .++.+.. ..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 289 i~~~~~~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 289 LNAWRTPYGASIFQ-SKESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEE-EECSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCeEEEE-ecCCC-cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999 6666544 34555 6999999999999999999999999996
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=303.46 Aligned_cols=286 Identities=18% Similarity=0.304 Sum_probs=232.6
Q ss_pred eeeeeeEEEEecCCCCCCCcc-eEEEe----------e-CCeeEEEECCCCe---eeeEEeeecCceEEeEEeccccccc
Q 003208 16 YLGEISALCFVHLPSHLSSLP-FLLAG----------S-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTE 80 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~-~l~~g----------~-~~~v~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~ 80 (839)
+..+|++++|+ |+ ++ ++++| + |+.|+|||+.+++ .+..+. +...|.+++|+
T Consensus 11 ~~~~v~~~~~s--p~----g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s------ 76 (416)
T 2pm9_A 11 EFSRTATFAWS--HD----KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ--VDSKFNDLDWS------ 76 (416)
T ss_dssp EEEESCBCCBC--SS----SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC--CSSCEEEEEEC------
T ss_pred hhhhcceEeeC--CC----CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe--cCCceEEEEEC------
Confidence 56789999999 99 54 88888 5 8899999999876 333333 34479999999
Q ss_pred CCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC-CcEEEEEeCCCcE
Q 003208 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSI 159 (839)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~-~~~las~~~d~~i 159 (839)
|+++ .+++++.|+.|++|++..... ..+.+..+.+|...|++++|+| + +.+|++++.|+.|
T Consensus 77 -~~~~---~l~~~~~dg~v~vw~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 77 -HNNK---IIAGALDNGSLELYSTNEANN-----------AINSMARFSNHSSSVKTVKFNA---KQDNVLASGGNNGEI 138 (416)
T ss_dssp -SSSS---CEEEEESSSCEEEECCSSTTS-----------CCCEEEECCCSSSCCCEEEECS---SSTTBEEEECSSSCE
T ss_pred -CCCC---eEEEEccCCeEEEeecccccc-----------cccchhhccCCccceEEEEEcC---CCCCEEEEEcCCCeE
Confidence 8873 555556799999999975220 0246788899999999999999 7 8899999999999
Q ss_pred EEEecCCCc------eEEEE--ecCCceeEEEEeeccCCcc-ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCC
Q 003208 160 RVWDISNSS------IILEV--HSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 160 ~vwd~~~~~------~~~~~--~~~~~~~~~s~~~~~~~~~-~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 230 (839)
++||+.+++ ....+ .......+.++.+ +++ +.++++++.|+.|++||++
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~v~iwd~~------------------- 196 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW---NQSLAHVFASAGSSNFASIWDLK------------------- 196 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE---CSSCTTEEEEESSSSCEEEEETT-------------------
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEe---CCCCCcEEEEEcCCCCEEEEECC-------------------
Confidence 999998876 33222 1122334556665 466 7899999999999999998
Q ss_pred CCCceeeEeecccccceeeEEEecC------CCCeEEEEEcCCC-CEEEEEeCCC---cEEEEEcccCccCCCCCceeee
Q 003208 231 SSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h------~~~V~~l~~~~~~-~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
..+.+..+..| ...|.+++|+|++ .++++++.|+ .|++||++..... .
T Consensus 197 --------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----~---- 254 (416)
T 2pm9_A 197 --------------AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----L---- 254 (416)
T ss_dssp --------------TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----S----
T ss_pred --------------CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----c----
Confidence 56666666655 8899999999997 6899999999 9999999885321 1
Q ss_pred ceEee-ccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEE
Q 003208 301 SSVLY-GHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKV 374 (839)
Q Consensus 301 ~~~~~-~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~i 374 (839)
..+. +|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+..|.. .|.+++|+|++ .+|++++.|+.|++
T Consensus 255 -~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 255 -QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp -BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred -EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEE
Confidence 2555 899999999997 479999999999999999 8889999999988 69999999999 89999999999999
Q ss_pred EecCC
Q 003208 375 HQFQA 379 (839)
Q Consensus 375 w~~~~ 379 (839)
|+++.
T Consensus 333 w~~~~ 337 (416)
T 2pm9_A 333 QTLQN 337 (416)
T ss_dssp EESCC
T ss_pred EEccC
Confidence 99965
No 46
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-32 Score=288.85 Aligned_cols=310 Identities=11% Similarity=0.097 Sum_probs=216.4
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-c------CcEEEEEEeecc
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G------EKRVKLFELNFE 107 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~------~~~i~iw~~~~~ 107 (839)
..|+.+..+.....|++.... ..+|+. .|.+++|+ ||| .+|+++ . |+.|++|+....
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~----p~~H~~-~V~~v~fS-------pDG----~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTA----PACMEV-QIGAVRYR-------RDG----ALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp ---------------------------CCCS-EEEEEEEC-------SSS----CEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred ceEEecCCCccccccCCCCCC----cccccC-CEEEEEEC-------CCC----CEEEEEcCCCCccccCeEEEEECCCC
Confidence 445444446778899875332 234444 69999999 999 455554 4 678888887643
Q ss_pred CCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE---ecCCceeEEEE
Q 003208 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV---HSPERCLLYSM 184 (839)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~---~~~~~~~~~s~ 184 (839)
.. .........+|...|++++|+| ++. +++++.|++|+|||+.+++..... .......+.++
T Consensus 81 ~~-----------~~~~~~~~~~~~~~V~~~~~s~---d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 81 AP-----------NESLCTAGVQTEAGVTDVAWVS---EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp -------------CGGGCSEEEECSSCEEEEEEET---TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred Cc-----------ceeEecccCCCCCCEEEEEEcC---CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 20 1223334457889999999999 876 456788999999999887654321 12233456777
Q ss_pred eeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEE
Q 003208 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (839)
Q Consensus 185 ~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 264 (839)
.+ ++++.+|++|+.|+.|++||+. .++.+..+.+|...|.+++|
T Consensus 146 ~~---spdg~~l~sgs~dg~v~iwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 146 SV---FSDGTQAVSGGKDFSVKVWDLS---------------------------------QKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp EE---CSSSSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEE
T ss_pred EE---CCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEEcCCCCCEEEEEE
Confidence 76 6899999999999999999998 78888899999999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCce
Q 003208 265 SSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQ 339 (839)
Q Consensus 265 ~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~ 339 (839)
+|++. .+++++.|++|++||+++++. ... .....|...+.+++|+ +.+|++|+.|+.|++||+ +++.
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~-----~~~---~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKP-----ATR---IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSC-----BCB---CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred ccCCCceeeeeccCCceEEEECCCCce-----eee---eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 99875 789999999999999988655 221 1345677889999998 468999999999999999 7888
Q ss_pred EEEeecccCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCC
Q 003208 340 LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (839)
Q Consensus 340 ~~~~~~h~~~~i~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (839)
+..+..|.. .|++++|+|++ ++|++|+.|++|++||++...+.. ..+|
T Consensus 262 ~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~------------------------------~~~H 310 (357)
T 4g56_B 262 AQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR------------------------------DLSH 310 (357)
T ss_dssp CEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE------------------------------ECCC
T ss_pred eEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE------------------------------ECCC
Confidence 999999988 69999999987 589999999999999985421111 1145
Q ss_pred CcceEEEEEec-CCe-EEEEeccceEEEEEecCC
Q 003208 419 SEYVRCLHLTS-EDT-LYIATNHGYLYHTKLCDM 450 (839)
Q Consensus 419 ~~~v~~~~~~~-~~~-~~~~~~~g~i~~~~~~~~ 450 (839)
.+.|++++|+| ++. ++.++.+|.|..|++...
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 57899999998 565 555678999988877543
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.4e-31 Score=279.50 Aligned_cols=296 Identities=15% Similarity=0.196 Sum_probs=235.0
Q ss_pred eeeeEeccCCCcceEEEEEeeccCC-CcEEEEEeCCCcEEEEecCCCc-----eEEEEecCCceeEEEEeeccCCccceE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERCLLYSMKLWGDNLEALR 195 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~-~~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~ 195 (839)
+++..+|+||.+.|++++|+| + +++||||+.|++|+|||+.+.+ +...+.++.. .+.++.+ ++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp---~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~---s~dg~~ 100 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVI---SSDGQF 100 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECT---TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEE---CTTSSE
T ss_pred eEEEEEECCccCCEEEEEEeC---CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEE---CCCCCE
Confidence 677788999999999999999 6 6899999999999999997654 3444555443 4666766 689999
Q ss_pred EEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
|++|+.|+.|++|+.. ..........+...+..+.+++++++|++++
T Consensus 101 l~s~~~d~~i~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 147 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLT---------------------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147 (340)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEcccccceEEeec---------------------------------ccceeeeecCCCCceeEEEEeecCccceeec
Confidence 9999999999999988 5666777778889999999999999999999
Q ss_pred CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC----CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCc
Q 003208 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (839)
Q Consensus 276 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~ 350 (839)
.|+.+++||...... .. ....+|...+..++|+ ..++++++.|+.|++||+ .++.+..+.+|.. +
T Consensus 148 ~d~~~~~~d~~~~~~-----~~----~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~ 217 (340)
T 4aow_A 148 RDKTIKLWNTLGVCK-----YT----VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-Y 217 (340)
T ss_dssp TTSCEEEECTTSCEE-----EE----ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-C
T ss_pred CCCeEEEEEeCCCce-----EE----EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-c
Confidence 999999999876533 11 2566889999999997 368899999999999999 7888899999988 7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecC
Q 003208 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 430 (839)
|.+++|+|++++|++|+.||.|++||++... .+..+. ....+.+++|+|+
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----------------~~~~~~-------------~~~~v~~~~~~~~ 267 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----------------HLYTLD-------------GGDIINALCFSPN 267 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEEE-------------CSSCEEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----------------eeeeec-------------CCceEEeeecCCC
Confidence 9999999999999999999999999995421 111111 1235899999999
Q ss_pred CeEEEEeccceEEEEEecCCCCce-----eEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCC
Q 003208 431 DTLYIATNHGYLYHTKLCDMDSVN-----WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (839)
Q Consensus 431 ~~~~~~~~~g~i~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~ 505 (839)
+.+++++.++.+..|++....... ........+...+.++++++++ ++|++|+.||.|++|+++++.
T Consensus 268 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--------~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG--------QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS--------SEEEEEETTSCEEEEEEEC--
T ss_pred CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC--------CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999877764322110 0000111235678888886654 899999999999999998764
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-31 Score=290.49 Aligned_cols=286 Identities=19% Similarity=0.356 Sum_probs=246.3
Q ss_pred CCCcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+.|++|++||+.+++ |.++|++++|+ +.++++|+ |+.|++||+.+++.+.++..+.. .|.++.
T Consensus 136 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~ 206 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--------DNIIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMH 206 (445)
T ss_dssp ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--------CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC-cEEEEE
Confidence 468999999998876 77899999999 44777777 99999999999999999987665 699999
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
++ ++ .+++++.|+.|++||+.. .+.+..+.+|...|.++++ ++.++++
T Consensus 207 ~~-------~~-----~l~s~s~dg~i~~wd~~~---------------~~~~~~~~~~~~~v~~~~~-----~~~~l~~ 254 (445)
T 2ovr_B 207 LH-------EK-----RVVSGSRDATLRVWDIET---------------GQCLHVLMGHVAAVRCVQY-----DGRRVVS 254 (445)
T ss_dssp EE-------TT-----EEEEEETTSEEEEEESSS---------------CCEEEEEECCSSCEEEEEE-----CSSCEEE
T ss_pred ec-------CC-----EEEEEeCCCEEEEEECCC---------------CcEEEEEcCCcccEEEEEE-----CCCEEEE
Confidence 97 44 777888899999999975 4567788899999999988 5678999
Q ss_pred EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++.++++|+.||.|++||+.
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~-----~~~~l~~~~~d~~i~i~d~~--------------------- 307 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF-----DGIHVVSGSLDTSIRVWDVE--------------------- 307 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE-----CSSEEEEEETTSCEEEEETT---------------------
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE-----CCCEEEEEeCCCeEEEEECC---------------------
Confidence 99999999999999999888876654 3556654 67899999999999999998
Q ss_pred CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec---ccc
Q 003208 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---HNA 309 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~ 309 (839)
..+.+..+.+|...+.++.++ ++++++++.|+.|++||+++++. .. .+.+ |..
T Consensus 308 ------------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~-----~~-----~~~~~~~~~~ 363 (445)
T 2ovr_B 308 ------------TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC-----LQ-----TLQGPNKHQS 363 (445)
T ss_dssp ------------TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----EE-----EECSTTSCSS
T ss_pred ------------CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE-----EE-----EEccCCCCCC
Confidence 677888899999999999884 57999999999999999988655 22 3443 889
Q ss_pred ceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEe-----ecccCCceEEEEEccCCCEEEEEeCCCc----EEEEecCC
Q 003208 310 RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI-----KEHIGRGIWRCLYDSLSSLLVTAGFDSA----IKVHQFQA 379 (839)
Q Consensus 310 ~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~-----~~h~~~~i~~~~~~~~~~~l~t~~~dg~----i~iw~~~~ 379 (839)
.|.+++|+++++++++.||.|++||+ +++.+..+ ..|.+ .|++++|+|++.++++|+.||+ |.+||++.
T Consensus 364 ~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 364 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc-eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999999999999 78888877 35666 7999999999999999999998 99999854
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=303.24 Aligned_cols=306 Identities=13% Similarity=0.151 Sum_probs=243.1
Q ss_pred CCCcCccccccCCCc---------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC----CeeeeEEeeecCc
Q 003208 1 MGKKDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----GTLIRPFQVFHGI 66 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~---------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~----~~~~~~~~~~~~~ 66 (839)
+.|++|++|++.++. |..+|++++|+ |+ +.+|++|. |+.|+|||+.+ .+.+..+..|..
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~- 114 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HN----NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS- 114 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC--SS----SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC--CC----CCeEEEEccCCeEEEeecccccccccchhhccCCcc-
Confidence 368899999998753 66889999999 98 78888877 89999999987 346777776555
Q ss_pred eEEeEEecccccccCCC-ccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 67 RLHGISCNFINCTEGSV-STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~-~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
.|.+++|+ |+ ++ .+++++.|+.|++||+.........+ .......+.+|...|.+++|+|
T Consensus 115 ~v~~~~~~-------~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~--- 175 (416)
T 2pm9_A 115 SVKTVKFN-------AKQDN---VLASGGNNGEIFIWDMNKCTESPSNY------TPLTPGQSMSSVDEVISLAWNQ--- 175 (416)
T ss_dssp CCCEEEEC-------SSSTT---BEEEECSSSCEEBCBTTTTSSCTTTC------CCBCCCCSCCSSCCCCEEEECS---
T ss_pred ceEEEEEc-------CCCCC---EEEEEcCCCeEEEEECCCCccccccc------cccccccccCCCCCeeEEEeCC---
Confidence 79999999 76 42 55555669999999997643100000 0112234568999999999999
Q ss_pred C-CcEEEEEeCCCcEEEEecCCCceEEEEecCC-----ceeEEEEeeccCCccc-eEEEEeecCC---eEEEEEeecccc
Q 003208 146 G-NRSLAIGCSDNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNLEA-LRIASGTIYN---EIIVWKVDWEHV 215 (839)
Q Consensus 146 ~-~~~las~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~-~~l~sg~~dg---~i~vw~~~~~~~ 215 (839)
+ +.+|++++.|+.|++||+.+++.+..+..+. ...+.++.+ ++++ .++++++.|+ .|++||++
T Consensus 176 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~d~~~~~i~~~d~~---- 248 (416)
T 2pm9_A 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW---HPKNSTRVATATGSDNDPSILIWDLR---- 248 (416)
T ss_dssp SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE---CSSCTTEEEEEECCSSSCCCCEEETT----
T ss_pred CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE---CCCCCCEEEEEECCCCCceEEEEeCC----
Confidence 7 7899999999999999999999888887653 455677776 5665 6899999998 99999998
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccc-eeeEEEe-cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLV-GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
.. .++..+. +|...|.+++|+| ++++|++++.|+.|++||+.+.+.
T Consensus 249 -----------------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-- 297 (416)
T 2pm9_A 249 -----------------------------NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-- 297 (416)
T ss_dssp -----------------------------STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--
T ss_pred -----------------------------CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--
Confidence 32 4555667 8999999999999 899999999999999999988655
Q ss_pred CCCceeeeceEeeccccceEEeEEC--C-CEEEEEeCCCeEEEEcC-CCceEEEee------------------------
Q 003208 293 SDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITAGEDCTCRVWGS-DGKQLKMIK------------------------ 344 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~-~~~~~~~~~------------------------ 344 (839)
+ ..+.+|...|.+++|+ + .++++++.|+.|++|++ .+.......
T Consensus 298 ---~-----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 298 ---L-----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp ---E-----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred ---c-----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 2 3677899999999999 3 79999999999999999 333211110
Q ss_pred -----------cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 345 -----------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 345 -----------~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.|.. ++.+++|+|+|++|++++.|+.|++|++..
T Consensus 370 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGE-PSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSSCCCCCSTTCC-CSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCccccC-CccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1333 677899999999999999999999999853
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-30 Score=285.26 Aligned_cols=313 Identities=18% Similarity=0.311 Sum_probs=255.3
Q ss_pred eeee-eeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGE-ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~-Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
|.+. ++|++++ +.++++|+ |+.|++||+.+++.+.++..|.. .|.+++++ ++ .++++
T Consensus 117 h~~~v~~~~~~~--------g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~-----~l~s~ 175 (445)
T 2ovr_B 117 HDDHVITCLQFC--------GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMR-------DN-----IIISG 175 (445)
T ss_dssp STTSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEECCCCSS-CEEEEEEE-------TT-----EEEEE
T ss_pred cCCCcEEEEEEc--------CCEEEEEECCCcEEEEECCCCcEEEEEcCCCC-CEEEEEec-------CC-----EEEEE
Confidence 4454 5777766 66888877 89999999999999999987665 69999998 44 77777
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
+.|+.|++||+.. ++.+..+.+|...|.++++++ +.+++|+.|+.|++||+.+++.+..+
T Consensus 176 ~~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 176 STDRTLKVWNAET---------------GECIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp ETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred eCCCeEEEEECCc---------------CcEEEEECCCCCcEEEEEecC-----CEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 8899999999975 567788899999999999854 67999999999999999999998888
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
..+... +.++.+ ++.++++|+.||.|++||+. ..+.+..+.
T Consensus 236 ~~~~~~-v~~~~~-----~~~~l~~~~~dg~i~iwd~~---------------------------------~~~~~~~~~ 276 (445)
T 2ovr_B 236 MGHVAA-VRCVQY-----DGRRVVSGAYDFMVKVWDPE---------------------------------TETCLHTLQ 276 (445)
T ss_dssp ECCSSC-EEEEEE-----CSSCEEEEETTSCEEEEEGG---------------------------------GTEEEEEEC
T ss_pred cCCccc-EEEEEE-----CCCEEEEEcCCCEEEEEECC---------------------------------CCcEeEEec
Confidence 766543 445544 57889999999999999998 778888899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw 333 (839)
+|...|.++.| ++.++++++.|+.|++||+++++. . ..+.+|...+.++.+.++++++++.||.|++|
T Consensus 277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-----I-----HTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-----E-----EEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE-----E-----EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 99999999999 788999999999999999988765 2 26778999999999999999999999999999
Q ss_pred cC-CCceEEEeec---ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCC
Q 003208 334 GS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (839)
Q Consensus 334 ~~-~~~~~~~~~~---h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (839)
|+ +++.+..+.. |.. +|.+++|+ +.+|++|+.||.|++||+... .+..+ ...
T Consensus 345 d~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~------------------~~~-- 401 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQS-AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL------------------VTL-- 401 (445)
T ss_dssp ETTTCCEEEEECSTTSCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE------------------EEC--
T ss_pred ECCCCcEEEEEccCCCCCC-CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee------------------ecc--
Confidence 99 8888888876 666 69999995 579999999999999998542 11111 000
Q ss_pred ccceeeccCCCcceEEEEEecCCeEEEE-eccce----EEEEEec
Q 003208 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGY----LYHTKLC 448 (839)
Q Consensus 409 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~g~----i~~~~~~ 448 (839)
....+.+.|.+++|+|++.++++ +.+|. +..+++.
T Consensus 402 -----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 402 -----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp -----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred -----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 01234567999999999877655 45664 5555543
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-31 Score=281.60 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=237.7
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|+ |+ +++|++|. |+.|+|||+.+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 31 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~s~~ 93 (369)
T 3zwl_B 31 HERPLTQVKYN--KE----GDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVD-------CFTK---YCVTGS 93 (369)
T ss_dssp CSSCEEEEEEC--TT----SCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred eeceEEEEEEc--CC----CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEc-------CCCC---EEEEEe
Confidence 78899999999 99 78888887 89999999999999999987665 69999999 8774 566667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC-----CcEEEEecCCCce
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD-----NSIRVWDISNSSI 169 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d-----~~i~vwd~~~~~~ 169 (839)
.|+.|++||+.. .+.+..+. |...|.+++|+| ++.+|++++.+ +.|++||+.....
T Consensus 94 ~dg~i~iwd~~~---------------~~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 94 ADYSIKLWDVSN---------------GQCVATWK-SPVPVKRVEFSP---CGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp TTTEEEEEETTT---------------CCEEEEEE-CSSCEEEEEECT---TSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CCCeEEEEECCC---------------CcEEEEee-cCCCeEEEEEcc---CCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 799999999975 34555555 888999999999 99999999998 9999999976542
Q ss_pred E-----------EEEecCCc-eeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceee
Q 003208 170 I-----------LEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (839)
Q Consensus 170 ~-----------~~~~~~~~-~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (839)
. ..+..+.. ..+.++.+ ++++.+|++++.||.|++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~-------------------------- 205 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGW---STKGKYIIAGHKDGKISKYDVS-------------------------- 205 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEE---CGGGCEEEEEETTSEEEEEETT--------------------------
T ss_pred ceeecccccceeeeccCCcCccceeEEEE---cCCCCEEEEEcCCCEEEEEECC--------------------------
Confidence 1 22222211 13555555 6889999999999999999998
Q ss_pred Eeeccccc-ceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEE
Q 003208 238 KLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (839)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 316 (839)
. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+.+... . ....+...+.+++|
T Consensus 206 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----~------~~~~~~~~~~~~~~ 267 (369)
T 3zwl_B 206 -------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV-----L------KKYETDCPLNTAVI 267 (369)
T ss_dssp -------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----E------EEEECSSCEEEEEE
T ss_pred -------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce-----e------eeecCCCCceeEEe
Confidence 4 677888899999999999999999999999999999999988765 1 33347788999999
Q ss_pred C--CCEEEEEeCCC--------------eEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 317 T--DSFIITAGEDC--------------TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 317 ~--~~~l~s~~~dg--------------~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+ +.++++++.++ .+++||. .++.+..+..|.. .|.+++|+|++++|++++.||.|++|+++.
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 8 68999999888 8999999 8889999999988 699999999999999999999999999965
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-30 Score=288.48 Aligned_cols=332 Identities=17% Similarity=0.221 Sum_probs=249.6
Q ss_pred eeeEeccCCCcce-EEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 123 SLVQSLPRLSHWV-FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 123 ~~~~~~~~h~~~I-~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
.....+.+|.+.| .++.+ ++++|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++ ++++|+.
T Consensus 112 ~~~~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~---~~~~-~l~s~s~ 181 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKY---AHGG-ILVSGST 181 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CSTT-EEEEEET
T ss_pred cceEEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEE---cCCC-EEEEEeC
Confidence 3456788999885 55444 567999999999999999999999998886654 4667776 4555 9999999
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEc--CCCCEEEEEeCCCc
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRS 279 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~d~~ 279 (839)
||.|++||+. +++.+..+.+|.+.|.+++|+ ++++++++++.|++
T Consensus 182 dg~i~vwd~~---------------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 182 DRTVRVWDIK---------------------------------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CCCEEEEECC---------------------------------CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 9999999998 777888899999999999998 57789999999999
Q ss_pred EEEEEcccCccCCCCCce-------------eeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeec
Q 003208 280 ARIWEVRAEYWKDSDSIE-------------EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~ 345 (839)
|++||+............ ........+|...|.++...++++++++.|+.|++||+ +++.+..+.+
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 999999876542000000 00012677899999999888999999999999999999 8889999999
Q ss_pred ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEE
Q 003208 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (839)
Q Consensus 346 h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 424 (839)
|.. .|.+++|+|+++++++|+.||.|++||++.. .+.++ ..|
T Consensus 309 ~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------------------------~~h------ 351 (464)
T 3v7d_B 309 HTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL------------------------------QGH------ 351 (464)
T ss_dssp CSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE------------------------------CCC------
T ss_pred CCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE------------------------------eCC------
Confidence 988 6999999999999999999999999998431 11000 011
Q ss_pred EEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 425 LHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 425 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
...+.++.+. +.++++++.||.|++|++.+.
T Consensus 352 ---------------------------------------~~~v~~~~~~----------~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 352 ---------------------------------------TALVGLLRLS----------DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp ---------------------------------------SSCEEEEEEC----------SSEEEEEETTSEEEEEETTTC
T ss_pred ---------------------------------------CCcEEEEEEc----------CCEEEEEeCCCcEEEEECCCC
Confidence 2233334332 157888888999999988654
Q ss_pred CCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEE
Q 003208 505 VHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (839)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 584 (839)
... ........ ....++++++++|++|+ ||.|++||+.+++. ...+...|...|+
T Consensus 383 ~~~------~~~~~~~~----~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~--------------~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 383 SRK------FSYHHTNL----SAITTFYVSDNILVSGS-ENQFNIYNLRSGKL--------------VHANILKDADQIW 437 (464)
T ss_dssp CEE------EEEECTTC----CCEEEEEECSSEEEEEE-TTEEEEEETTTCCE--------------EESCTTTTCSEEE
T ss_pred cee------eeecCCCC----ccEEEEEeCCCEEEEec-CCeEEEEECCCCcE--------------EehhhccCCCcEE
Confidence 311 11111111 11256788999999998 89999999998752 2233346789999
Q ss_pred EEeeecCCCEEEEecCCccEEEEec
Q 003208 585 CLDASFEDEVLFCGDLRGNLVLFPL 609 (839)
Q Consensus 585 ~l~~s~~~~~la~gs~dg~i~iw~~ 609 (839)
+++|+ +..++++++.+|.+.+|-+
T Consensus 438 ~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 438 SVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99998 4566667777777766643
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-31 Score=308.32 Aligned_cols=282 Identities=15% Similarity=0.220 Sum_probs=225.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC-----eeeeEEeeecCceEEeEEecccccccCCCccceee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 89 (839)
|.+.|+||+|+ |+ +..+|++|+ |+.|+|||+.+. .....+..|.. .|.+++|+ |+++ .
T Consensus 381 H~~~V~~v~~~--~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s-------~~g~---~ 444 (694)
T 3dm0_A 381 HTDMVTAIATP--ID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLS-------SDGQ---F 444 (694)
T ss_dssp CSSCEEEEECC--TT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEEC-------TTSS---E
T ss_pred CCceeEEEEec--CC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEEC-------CCCC---E
Confidence 88999999999 87 357888877 999999998763 34556676655 69999999 8884 5
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
+++++.|++|+|||+.. ...+..+.+|.+.|++++|+| ++.+|++|+.|++|++||......
T Consensus 445 l~sgs~Dg~v~vwd~~~---------------~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAA---------------GVSTRRFVGHTKDVLSVAFSL---DNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEeCCCcEEEEECCC---------------CcceeEEeCCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEECCCCcc
Confidence 66667799999999975 456778889999999999999 999999999999999999865443
Q ss_pred EEEEe--cCCceeEEEEeeccCCccc--eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc
Q 003208 170 ILEVH--SPERCLLYSMKLWGDNLEA--LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (839)
Q Consensus 170 ~~~~~--~~~~~~~~s~~~~~~~~~~--~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (839)
..... ..+...+.++.+ ++++ ..+++|+.|+.|++||+. .
T Consensus 507 ~~~~~~~~~h~~~v~~~~~---~~~~~~~~l~s~s~d~~v~vwd~~---------------------------------~ 550 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRF---SPNTLQPTIVSASWDKTVKVWNLS---------------------------------N 550 (694)
T ss_dssp EEECSSTTSCSSCEEEEEE---CSCSSSCEEEEEETTSCEEEEETT---------------------------------T
T ss_pred eeeccCCCCCCCcEEEEEE---eCCCCcceEEEEeCCCeEEEEECC---------------------------------C
Confidence 33222 123344666666 3444 689999999999999998 6
Q ss_pred ceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEE
Q 003208 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITA 324 (839)
Q Consensus 246 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~ 324 (839)
.+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++. + ....+...|.+++|+ +..++++
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-----~------~~~~~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-----L------YSLEANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE-----E------ECCBCSSCEEEEEECSSSSEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-----E------EEecCCCcEEEEEEcCCCcEEEE
Confidence 677788999999999999999999999999999999999988755 1 223445679999999 3455555
Q ss_pred eCCCeEEEEcC-CCceEEEeecccC------------------CceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 325 GEDCTCRVWGS-DGKQLKMIKEHIG------------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 325 ~~dg~i~vw~~-~~~~~~~~~~h~~------------------~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+.++.|++||+ +++.+..+..+.. ..+.+++|+|++++|++|+.||.|++|++.
T Consensus 620 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 620 ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 66778999999 6666666643221 026789999999999999999999999984
No 54
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-31 Score=282.32 Aligned_cols=295 Identities=14% Similarity=0.192 Sum_probs=233.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee----CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCC---cccee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV---STRVT 88 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~----~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~---~~~~~ 88 (839)
|.++|++++|+ |+ +..++++|+ |+.|+|||+.+++........+..+|.+++|+ |+ ++
T Consensus 17 h~~~v~~~~~~--p~---~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~~--- 81 (357)
T 3i2n_A 17 FNYTVFDCKWV--PC---SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG-------ATSLQQR--- 81 (357)
T ss_dssp CSSCEEEEEEC--TT---SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECT-------TCCTTTC---
T ss_pred CCCceEEEEEc--CC---CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEc-------CCCCCCc---
Confidence 78899999999 98 235666663 79999999999887666554455579999999 65 43
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee---ccCCCcEEEEEeCCCcEEEEecC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK---VCNGNRSLAIGCSDNSIRVWDIS 165 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~---~~~~~~~las~~~d~~i~vwd~~ 165 (839)
.+++++.|+.|++|++.... ..+..+.+|...|.+++|.+ .++++++|++++.|+.|++||+.
T Consensus 82 ~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 82 YLATGDFGGNLHIWNLEAPE--------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp CEEEEETTSCEEEECTTSCS--------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred eEEEecCCCeEEEEeCCCCC--------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence 66666779999999997532 25677889999999996642 12289999999999999999999
Q ss_pred CCc-eEEEEecCC---ceeEEEEeecc-CCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEee
Q 003208 166 NSS-IILEVHSPE---RCLLYSMKLWG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (839)
Q Consensus 166 ~~~-~~~~~~~~~---~~~~~s~~~~~-~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (839)
+++ .+..+..+. ...++++.+.. .++++.++++++.||.|++||++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------------------- 198 (357)
T 3i2n_A 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----------------------------- 198 (357)
T ss_dssp SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-----------------------------
T ss_pred CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-----------------------------
Confidence 876 566665332 22455555321 36889999999999999999998
Q ss_pred cccccceeeEEEecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 241 DQQHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
..+.. ....|...|.+++|+| ++.+|++++.|+.|++||++.... ...+......+|...|.+++|+
T Consensus 199 ----~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 199 ----NMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-----TKGFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp ----TTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-----TTEEEEEEEECCSSCEEEEEEE
T ss_pred ----cCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-----ccceeeeccCCCcCCEEEEEEC
Confidence 44443 3467899999999999 899999999999999999988655 2222212445899999999998
Q ss_pred C--C-EEEEEeCCCeEEEEcC-CC-------------------ceEEEeecccCCceEEEEEccCCCEEE-EEeCCCcEE
Q 003208 318 D--S-FIITAGEDCTCRVWGS-DG-------------------KQLKMIKEHIGRGIWRCLYDSLSSLLV-TAGFDSAIK 373 (839)
Q Consensus 318 ~--~-~l~s~~~dg~i~vw~~-~~-------------------~~~~~~~~h~~~~i~~~~~~~~~~~l~-t~~~dg~i~ 373 (839)
+ . ++++++.||.|++||+ .+ +.+..+..|.. +|.+++|+|++++|+ +++.||.|+
T Consensus 269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEcCCCCeEEEEecCCCcEE
Confidence 4 3 7999999999999998 32 35777888887 799999999999888 899999999
Q ss_pred EEecCC
Q 003208 374 VHQFQA 379 (839)
Q Consensus 374 iw~~~~ 379 (839)
+|++..
T Consensus 348 iw~~~~ 353 (357)
T 3i2n_A 348 VLIVTK 353 (357)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 999854
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-30 Score=270.05 Aligned_cols=287 Identities=17% Similarity=0.264 Sum_probs=232.9
Q ss_pred eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc
Q 003208 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (839)
Q Consensus 55 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 134 (839)
.+..++..|.. +|.+++|+ |+++ .+++++.|+.|++|++.. .+....+.+|...
T Consensus 14 ~~~~~~~gh~~-~v~~~~~s-------~~~~---~l~s~~~dg~i~iw~~~~---------------~~~~~~~~~h~~~ 67 (312)
T 4ery_A 14 ALKFTLAGHTK-AVSSVKFS-------PNGE---WLASSSADKLIKIWGAYD---------------GKFEKTISGHKLG 67 (312)
T ss_dssp EEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEETTSCEEEEETTT---------------CCEEEEECCCSSC
T ss_pred eeEEEEcccCC-cEEEEEEC-------CCCC---EEEEeeCCCeEEEEeCCC---------------cccchhhccCCCc
Confidence 44556666555 79999999 8874 556667799999999865 4566778899999
Q ss_pred eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
|.+++|+| ++++|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++.+|++|+.|+.|++||++
T Consensus 68 v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~l~s~~~d~~i~iwd~~--- 137 (312)
T 4ery_A 68 ISDVAWSS---DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNF---NPQSNLIVSGSFDESVRIWDVK--- 137 (312)
T ss_dssp EEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEETT---
T ss_pred eEEEEEcC---CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEE---cCCCCEEEEEeCCCcEEEEECC---
Confidence 99999999 999999999999999999999999988876654 3556666 6889999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 294 (839)
..+.+..+.+|...|.+++|+|++++|++++.|+.|++||+++.+.
T Consensus 138 ------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---- 183 (312)
T 4ery_A 138 ------------------------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---- 183 (312)
T ss_dssp ------------------------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----
T ss_pred ------------------------------CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----
Confidence 6777888899999999999999999999999999999999988654
Q ss_pred CceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCC--ceEEEEEccCCCEEEEEeCC
Q 003208 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 295 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~--~i~~~~~~~~~~~l~t~~~d 369 (839)
.. .....+...+.+++|+ ++++++++.|+.|++||+ +++.+..+..|... .+......+++.+|++|+.|
T Consensus 184 -~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 184 -LK----TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp -EE----EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred -ee----EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 22 1334567789999998 589999999999999999 78888888887652 12222334678899999999
Q ss_pred CcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe---ccceEEEE
Q 003208 370 SAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT---NHGYLYHT 445 (839)
Q Consensus 370 g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~g~i~~~ 445 (839)
|.|++||++.. .++ .+.+|...|.+++|+|++.+++++ .++.+..|
T Consensus 259 g~i~vwd~~~~~~~~------------------------------~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 259 NLVYIWNLQTKEIVQ------------------------------KLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp SCEEEEETTTCCEEE------------------------------EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred CEEEEEECCCchhhh------------------------------hhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 99999999542 222 223455679999999999877765 47777665
Q ss_pred E
Q 003208 446 K 446 (839)
Q Consensus 446 ~ 446 (839)
+
T Consensus 309 ~ 309 (312)
T 4ery_A 309 K 309 (312)
T ss_dssp E
T ss_pred c
Confidence 4
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.9e-31 Score=288.14 Aligned_cols=299 Identities=10% Similarity=0.077 Sum_probs=238.8
Q ss_pred CCcCccccccCCCc-----ee-eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEec
Q 003208 2 GKKDLSEWRLDVGQ-----YL-GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (839)
Q Consensus 2 ~d~~i~~w~~~~~~-----~~-~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 74 (839)
.|+++++||+.+++ .. ..+.+.+|+ ++ +++|++|. ++.|+|||+.+++.+..+..|.. .|.+++|+
T Consensus 76 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~ 148 (420)
T 3vl1_A 76 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAK--LQ----MRRFILGTTEGDIKVLDSNFNLQREIDQAHVS-EITKLKFF 148 (420)
T ss_dssp ETTEEEEEECCSEETTTTSCSCCEEEEEEEC--SS----SCEEEEEETTSCEEEECTTSCEEEEETTSSSS-CEEEEEEC
T ss_pred cCCcEEEEEecccceeeEEecCCceEEEEEe--cC----CCEEEEEECCCCEEEEeCCCcceeeecccccC-ccEEEEEC
Confidence 48899999998765 11 334455677 88 78888887 89999999999988777766555 79999999
Q ss_pred ccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe
Q 003208 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~ 154 (839)
|+++ .+++++.|+.|++||+.. .+.+..+.+|...|++++|+| ++.+|++++
T Consensus 149 -------~~~~---~l~s~s~d~~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~ 200 (420)
T 3vl1_A 149 -------PSGE---ALISSSQDMQLKIWSVKD---------------GSNPRTLIGHRATVTDIAIID---RGRNVLSAS 200 (420)
T ss_dssp -------TTSS---EEEEEETTSEEEEEETTT---------------CCCCEEEECCSSCEEEEEEET---TTTEEEEEE
T ss_pred -------CCCC---EEEEEeCCCeEEEEeCCC---------------CcCceEEcCCCCcEEEEEEcC---CCCEEEEEc
Confidence 8874 566667799999999975 345677789999999999999 999999999
Q ss_pred CCCcEEEEecCCCceEEEEecCC--ceeEEEEee------------------ccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 155 SDNSIRVWDISNSSIILEVHSPE--RCLLYSMKL------------------WGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 155 ~d~~i~vwd~~~~~~~~~~~~~~--~~~~~s~~~------------------~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
.|+.|++||+.+++.+..+..+. ...+.++.+ ..+++++.+|++|+.||.|++||++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--- 277 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--- 277 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---
Confidence 99999999999999988876432 222333332 2236889999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
..+....+ .+|...|.+++|+|+++ +|++++.|+.|++||+++....
T Consensus 278 ------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~- 326 (420)
T 3vl1_A 278 ------------------------------SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP- 326 (420)
T ss_dssp ------------------------------TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-
T ss_pred ------------------------------CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-
Confidence 44444444 46899999999999998 9999999999999999886431
Q ss_pred CCCceeeeceEeec-cccceEEeEEC-CCEEEEEeCCCeEEEEcCCC----------ceEEEeecccCCceEEEEEccCC
Q 003208 293 SDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----------KQLKMIKEHIGRGIWRCLYDSLS 360 (839)
Q Consensus 293 ~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~----------~~~~~~~~h~~~~i~~~~~~~~~ 360 (839)
.. .+.. |...|.++.+. +.+|++++.|+.|++|++.. .....+..|.. .|.+++|+|++
T Consensus 327 ---~~-----~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~ 397 (420)
T 3vl1_A 327 ---VG-----EFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD-AVSQFCYVSDD 397 (420)
T ss_dssp ---SE-----EEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC-CCCEEEEECCS
T ss_pred ---hh-----hhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc-ceEEEEEccCC
Confidence 11 4444 77889999887 67999999999999999832 22334556666 69999999999
Q ss_pred C---EEEEEeCCCcEEEEecC
Q 003208 361 S---LLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 361 ~---~l~t~~~dg~i~iw~~~ 378 (839)
. .+++++.+|.+.+|+++
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESC
T ss_pred CCcceEEEEcCCceEEEEecc
Confidence 9 78888899999999985
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9e-31 Score=280.94 Aligned_cols=301 Identities=14% Similarity=0.172 Sum_probs=235.4
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe--eeeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
|.++|++++|+ |+ +++|++|. ++.|+|||+.+++ .+..+..+.. .|.+++|+ |+++ .+++
T Consensus 7 ~~~~i~~~~~s--~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWN--KD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWA-------PDSN---RIVT 69 (372)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEE-------TTTT---EEEE
T ss_pred cCCCeEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEe-------CCCC---EEEE
Confidence 67889999999 99 88888885 9999999999987 7888887655 79999999 8774 5666
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce---
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--- 169 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~--- 169 (839)
++.|+.|++|++.... ......+..|...|.+++|+| ++++|++++.|+.|++||+.....
T Consensus 70 ~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRT-------------WKPTLVILRINRAARCVRWAP---NEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEECCCCSSCEEEEEECT---TSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCe-------------eeeeEEeecCCCceeEEEECC---CCCEEEEEeCCCEEEEEEecCCCccee
Confidence 6779999999997643 344555678999999999999 999999999999999999988763
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc-ccccee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ-QHTAVN 248 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 248 (839)
...+..+....+.++.+ ++++.+|++|+.||.|++||+.......... ...|.. ....+.
T Consensus 134 ~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPA----------------PTPWGSKMPFGEL 194 (372)
T ss_dssp EEEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCC----------------CBTTBSCCCTTCE
T ss_pred eeeeecccCCCeeEEEE---cCCCCEEEEEcCCCCEEEEEccccccccccc----------------ccccccccchhhh
Confidence 34443444555777777 5788999999999999999986322111100 000000 013566
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCC
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGED 327 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~d 327 (839)
+..+.+|...|.+++|+|++++|++++.|+.|++||+++.+. . ..+..|..+|.+++|+ +..+++++.|
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~~~d 264 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----V-----ATLASETLPLLAVTFITESSLVAAGHD 264 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----E-----EEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----e-----EEEccCCCCeEEEEEecCCCEEEEEeC
Confidence 777889999999999999999999999999999999988765 2 2667888999999998 3444445599
Q ss_pred CeEEEEcC-C--Cc--eE------------------------------------EEe-ecccCCceEEEEEc-cCC---C
Q 003208 328 CTCRVWGS-D--GK--QL------------------------------------KMI-KEHIGRGIWRCLYD-SLS---S 361 (839)
Q Consensus 328 g~i~vw~~-~--~~--~~------------------------------------~~~-~~h~~~~i~~~~~~-~~~---~ 361 (839)
+.|++|++ . ++ .+ ..+ .+|.. +|++++|. +++ .
T Consensus 265 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 265 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCS 343 (372)
T ss_dssp SSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCS
T ss_pred CeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCccee
Confidence 99999999 4 31 00 223 37777 79999966 666 8
Q ss_pred EEEEEeCCCcEEEEecCC
Q 003208 362 LLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~ 379 (839)
+|++|+.||.|++|+++.
T Consensus 344 ~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEEEETTSEEEEEEHHH
T ss_pred eEEEecCCCceEEEEecC
Confidence 999999999999999843
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-30 Score=279.51 Aligned_cols=299 Identities=20% Similarity=0.297 Sum_probs=229.0
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCc-----------------eeEEEEeeccCCcc
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-----------------CLLYSMKLWGDNLE 192 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~-----------------~~~~s~~~~~~~~~ 192 (839)
+|.+.|.+++|+| ++++||+|+ ++.+++|++.+++.+..+..+.. ..+.++.| +++
T Consensus 62 ~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~d 134 (393)
T 1erj_A 62 DHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF---SPD 134 (393)
T ss_dssp ECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE---CTT
T ss_pred CCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE---CCC
Confidence 6999999999999 999999986 78999999999988877654321 12556666 689
Q ss_pred ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEE
Q 003208 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 272 (839)
+.+|++|+.|+.|++||+. ..+.+..+.+|...|.+++|+|++++|+
T Consensus 135 g~~l~s~~~d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 181 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIE---------------------------------NRKIVMILQGHEQDIYSLDYFPSGDKLV 181 (393)
T ss_dssp SSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCCCeEEEEECC---------------------------------CCcEEEEEccCCCCEEEEEEcCCCCEEE
Confidence 9999999999999999998 6778888999999999999999999999
Q ss_pred EEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CCceEEEe-----
Q 003208 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI----- 343 (839)
Q Consensus 273 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~~~~~~~----- 343 (839)
+++.|++|++||+++++. .....+...+.+++|+ +.++++++.|+.|++||+ +++.+..+
T Consensus 182 s~s~d~~v~iwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~ 250 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQC-----------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250 (393)
T ss_dssp EEETTSEEEEEETTTTEE-----------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred EecCCCcEEEEECCCCee-----------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc
Confidence 999999999999988655 1333466789999997 479999999999999999 67777666
Q ss_pred --ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcc
Q 003208 344 --KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421 (839)
Q Consensus 344 --~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (839)
.+|.. .|.+++|+|++++|++|+.|+.|++||++...... ....+........+.+|...
T Consensus 251 ~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~-----------------~~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 251 SGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-----------------DSKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------------CEEEEEECCSSC
T ss_pred CCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc-----------------cccCCCCCcceEEEecccCc
Confidence 46777 69999999999999999999999999995421100 00001111122234467778
Q ss_pred eEEEEEecCCe-EEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 422 VRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 422 v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
|.+++|++++. +++++.++.+..|++.... ....+.+| ...+.++++.+... ..++.+++++|+.||.|++|+
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~---~~~~l~~h-~~~v~~v~~~~~~~--~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGN---PLLMLQGH-RNSVISVAVANGSS--LGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTCC---EEEEEECC-SSCEEEEEECSSCT--TCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEECCC-CCCEEEEEecCCcC--cCCCCCEEEEECCCCcEEECc
Confidence 99999999875 4556678888877665432 22344444 56788888766421 024568999999999999999
Q ss_pred EcC
Q 003208 501 VVG 503 (839)
Q Consensus 501 ~~~ 503 (839)
+..
T Consensus 387 ~~~ 389 (393)
T 1erj_A 387 YKK 389 (393)
T ss_dssp EEE
T ss_pred ccc
Confidence 854
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.6e-31 Score=286.86 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=233.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe------eeeEEeeecCceEEeEEecccccccCCC----c
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIRPFQVFHGIRLHGISCNFINCTEGSV----S 84 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~----~ 84 (839)
|.++|++|+|+ | .+|++|+ |+.|+|||+.+++ .+..+..+.. .|.+++|+ |+ +
T Consensus 15 h~~~i~~~~~~--~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~~g 78 (397)
T 1sq9_A 15 HDADIFSVSAC--N------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-GLHHVDVL-------QAIERDA 78 (397)
T ss_dssp SSSCEEEEEEC--S------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT-CEEEEEEE-------EEEETTT
T ss_pred hhcCeEEEEec--C------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC-cEEEEEEe-------cccccCC
Confidence 88999999999 5 4677766 9999999999887 6778886655 69999999 66 5
Q ss_pred ---cceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC-----CcceEEEEEe----eccCCCcE-EE
Q 003208 85 ---TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-----SHWVFDVCFL----KVCNGNRS-LA 151 (839)
Q Consensus 85 ---~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~I~~~~~~----~~~~~~~~-la 151 (839)
+ .+++++.|+.|++|++...... .......+..| ...|.+++|+ | ++.+ |+
T Consensus 79 ~~~~---~l~s~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~l~ 142 (397)
T 1sq9_A 79 FELC---LVATTSFSGDLLFYRITREDET----------KKVIFEKLDLLDSDMKKHSFWALKWGASNDR---LLSHRLV 142 (397)
T ss_dssp EEEE---EEEEEETTSCEEEEEEEECTTT----------CCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEE
T ss_pred cccc---EEEEEcCCCCEEEEEccCCccc----------ccccceeecccccccCCCcEEEEEEeeccCC---CCceEEE
Confidence 4 6777788999999999864310 01226777788 5899999999 8 9999 99
Q ss_pred EEeCCCcEEEEecCC------CceEE-----EEec------CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 152 IGCSDNSIRVWDISN------SSIIL-----EVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 152 s~~~d~~i~vwd~~~------~~~~~-----~~~~------~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
+++.|+.|++||+.+ ++.+. .+.. .....+.++.+ ++++ ++++|+.||.|++||++
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~l~~~~~dg~i~i~d~~--- 215 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI---SERG-LIATGFNNGTVQISELS--- 215 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTTS-EEEEECTTSEEEEEETT---
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE---CCCc-eEEEEeCCCcEEEEECC---
Confidence 999999999999988 55554 5532 22333556665 5788 99999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec---C---CCCeEEEEEcCCCCEEEEEeCC---CcEEEEEc
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG---H---EGSIFRIEWSSCGSKLVSVSDD---RSARIWEV 285 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~V~~l~~~~~~~~l~s~s~d---~~i~iwd~ 285 (839)
..+.+..+.+ | ...|.+++|+|++++|++++.| +.|++||+
T Consensus 216 ------------------------------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 216 ------------------------------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp ------------------------------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred ------------------------------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 6777888888 9 9999999999999999999999 99999999
Q ss_pred ccCccCCCCCceeeeceEeec-------------cccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEee-----
Q 003208 286 RAEYWKDSDSIEEVGSSVLYG-------------HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK----- 344 (839)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~----- 344 (839)
.+.+. .. .+.+ |...|.+++|+ +.+|++++.|+.|++||+ .++.+..+.
T Consensus 266 ~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 335 (397)
T 1sq9_A 266 EFGER-----IG-----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335 (397)
T ss_dssp TTCCE-----EE-----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred CCCcc-----cc-----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence 88655 22 4555 99999999998 689999999999999999 788888888
Q ss_pred -cc---------------cCCceEEEEEccCC----------CEEEEEeCCCcEEEEecCC
Q 003208 345 -EH---------------IGRGIWRCLYDSLS----------SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 345 -~h---------------~~~~i~~~~~~~~~----------~~l~t~~~dg~i~iw~~~~ 379 (839)
.| .. +|.+++|+|++ ++|++++.||.|++|++++
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 336 IEIEEDILAVDEHGDSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CSSGGGCCCBCTTSCBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccchhhhhccccccccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 77 66 79999999998 7999999999999999853
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=296.32 Aligned_cols=325 Identities=12% Similarity=0.100 Sum_probs=222.7
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc---CCCcEEEEEeCCCc
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC---NGNRSLAIGCSDNS 158 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~---~~~~~las~~~d~~ 158 (839)
|+++ .+..++.|++|+||++..... .......+.+|.+.|.+++|+|.. +++.+||+++.|++
T Consensus 171 ~~~~---~laS~s~D~tI~iWd~~~~~~-----------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 171 EHLE---MFDKEKHSSCIQIFKMNTSTL-----------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT 236 (524)
T ss_dssp --------------CEEEEEEEEETTTC-----------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred hhhh---hhccCCCCceEEEEEccCCCC-----------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence 6662 344445699999999976430 022234566788999999999920 12579999999999
Q ss_pred EEEEecCCCce-----------EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 159 IRVWDISNSSI-----------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 159 i~vwd~~~~~~-----------~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
|++||+.++.. ...+..+. ..+.++.|. ++ ..|++|+.||+|++||+.
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~v~sv~~s---~~-~~lasgs~DgtV~lWD~~---------------- 295 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLAD-SLITTFDFL---SP-TTVVCGFKNGFVAEFDLT---------------- 295 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTT-TCEEEEEES---SS-SEEEEEETTSEEEEEETT----------------
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCC-CCEEEEEec---CC-CeEEEEeCCCEEEEEECC----------------
Confidence 99999976642 12344443 346677773 33 489999999999999997
Q ss_pred CCCCCCceeeEeecccccc-eeeEEEecCCCCeEEE--EEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceE
Q 003208 228 HGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRI--EWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (839)
.. .+...+.+|.+.|.+| .|+|++ .+|+|++.|++|++||+++.+. .. .
T Consensus 296 -----------------~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-----~~-----~ 348 (524)
T 2j04_B 296 -----------------DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-----TK-----T 348 (524)
T ss_dssp -----------------BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-----HC-----E
T ss_pred -----------------CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-----cc-----c
Confidence 32 3455688999999999 578887 8999999999999999988654 22 4
Q ss_pred eecccc--ceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 304 LYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 304 ~~~h~~--~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+.+|.. .|.+++|+ +..+++++.|++|++||+ .+.++..+.+|.+ .|++++|+|++++|++|+.||+|++|++.
T Consensus 349 ~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 445543 57889998 468999999999999999 7777788889998 79999999999999999999999999986
Q ss_pred CcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEE
Q 003208 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (839)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 458 (839)
...+........ ......+..++|+|++.++.....-.+.. +.. .......
T Consensus 428 ~~~~~~~~~~~~-------------------------~~~~~~v~~v~~sp~g~~~~~~~~~~~~~---~~~-~g~~~~~ 478 (524)
T 2j04_B 428 RRLLHGIKNSSA-------------------------TQKSLRLWKWDYSIKDDKYRIDSSYEVYP---LTV-NDVSKAK 478 (524)
T ss_dssp SSTTTCC-------------------------------CCCCEEEECBCCSSSCEEEECCCCCCCC--------------
T ss_pred HhhccccccCcc-------------------------ceeeeEEEEeccCCCCCeEEccCCceecc---ccc-CCcceee
Confidence 543322111000 00012366788898887554322111110 110 0111122
Q ss_pred eeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 459 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
+.++ ...|.+++++|+. +...++++|+.+|.|+||++...
T Consensus 479 l~gh-~~~V~~Vafsp~~-----~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 479 IDAH-GINITCTKWNETS-----AGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ---C-CCSCCCEEECCST-----TTTTEEEEECTTSEEEEEECSCC
T ss_pred ecCC-CceEEEEECCCCC-----CccHHHHhhccCceEEEEEcccc
Confidence 3333 5678888888874 33569999999999999998653
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=304.07 Aligned_cols=306 Identities=11% Similarity=0.024 Sum_probs=215.5
Q ss_pred CCCcCccccccCCCc-----------eeeeeeEEEEecCCCC-C-CCcceEEEee-CCeeEEEECCCCee----------
Q 003208 1 MGKKDLSEWRLDVGQ-----------YLGEISALCFVHLPSH-L-SSLPFLLAGS-GSQVLLYDLEAGTL---------- 56 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-----------~~~~Vt~l~f~~~~~~-~-~~~~~l~~g~-~~~v~iwd~~~~~~---------- 56 (839)
|.|++|+||++.+++ |.+.|.+|+|+ |+- . ..+.+|++++ |++|+|||+.+++.
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ws--p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWH--EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEEC--SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEEC--CCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 468999999997654 34679999999 850 0 0146888877 99999999987642
Q ss_pred -eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce
Q 003208 57 -IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (839)
Q Consensus 57 -~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (839)
..++..+. ..|.+++|+ +++ .+++++.|++|++||+.... .+...+.+|.+.|
T Consensus 258 p~~~l~~h~-~~v~sv~~s-------~~~----~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V 311 (524)
T 2j04_B 258 PSLTLSLAD-SLITTFDFL-------SPT----TVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYI 311 (524)
T ss_dssp CSEEECCTT-TCEEEEEES-------SSS----EEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCE
T ss_pred ceEEEEcCC-CCEEEEEec-------CCC----eEEEEeCCCEEEEEECCCCC--------------CceEEeecccccE
Confidence 12455444 479999998 654 67777789999999997532 2345578999999
Q ss_pred EEE--EEeeccCCC-cEEEEEeCCCcEEEEecCCCceEEEEecCCc-eeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 136 FDV--CFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 136 ~~~--~~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
+++ +|+| ++ .+||||+.|++|+|||+++++.+..+..+.. ..++++.| +|++..+++++.|+.|++||++
T Consensus 312 ~sv~~~~s~---~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f---sp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 312 LSVSTAYSD---FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY---CPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp EEEEEECCT---TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE---ETTTTEEEEECSSSEEEEEETT
T ss_pred EEEEEEcCC---CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe---CCCcCeEEEeCCCCcEEEEECc
Confidence 999 4566 77 8999999999999999998776555543322 12344555 5788889999999999999998
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 291 (839)
....+..+.+|.+.|++|+|+|+++.|++|+.|++|++||+.....
T Consensus 386 ---------------------------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~- 431 (524)
T 2j04_B 386 ---------------------------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL- 431 (524)
T ss_dssp ---------------------------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-
T ss_pred ---------------------------------ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-
Confidence 5666677889999999999999999999999999999999865422
Q ss_pred CCCCceeeeceEeeccccceEEeEECC-CEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCC---EEEEEe
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS---LLVTAG 367 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~---~l~t~~ 367 (839)
..........+...+++++|++ ..++....+..+..|+.++..+..+.+|.. +|++++|+|++. ++++|+
T Consensus 432 -----~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~-~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 432 -----HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI-NITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp -----TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC-SCCCEEECCSTTTTTEEEEEC
T ss_pred -----cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc-eEEEEECCCCCCccHHHHhhc
Confidence 1000000011233578899983 222333222223223335778888999988 699999999964 999999
Q ss_pred CCCcEEEEecCCc
Q 003208 368 FDSAIKVHQFQAF 380 (839)
Q Consensus 368 ~dg~i~iw~~~~~ 380 (839)
.||.|+||+++..
T Consensus 506 ~~g~vrlw~l~~~ 518 (524)
T 2j04_B 506 SAGLLTLEYLSLE 518 (524)
T ss_dssp TTSEEEEEECSCC
T ss_pred cCceEEEEEcccc
Confidence 9999999999653
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-30 Score=279.21 Aligned_cols=290 Identities=12% Similarity=0.143 Sum_probs=221.6
Q ss_pred eeeeeeEEEEecCCCCCCCc-ceEEEee-CCeeEEEECCCCeeeeEEee-ecCceEEeEEecccccccCC-CccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSL-PFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGS-VSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~-~~l~~g~-~~~v~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l 91 (839)
|.++|++++|+ |+ + ++|++|+ |+.|+|||+.+++....+.. .+...|.+++|+ | +++ .++
T Consensus 72 h~~~v~~~~~~--~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~---~l~ 135 (383)
T 3ei3_B 72 FDRRVTSLEWH--PT----HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN-------QFNTN---QLF 135 (383)
T ss_dssp CSSCEEEEEEC--SS----CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE-------TTEEE---EEE
T ss_pred CCCCEEEEEEC--CC----CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeC-------CCCCC---EEE
Confidence 77899999999 98 6 7888887 89999999998887777763 244579999999 7 442 555
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+++.|+.|++||+.... ........+|...|.+++|+| ++.+|++|+.|+.|++||+ +++.+.
T Consensus 136 s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV-------------IQVFAKTDSWDYWYCCVDVSV---SRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp EEETTTEEEEEETTSCE-------------EEEEECCCCSSCCEEEEEEET---TTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred EEeCCCEEEEEECCCCc-------------eEEEeccCCCCCCeEEEEECC---CCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 66679999999997422 333444456668999999999 9999999999999999999 577777
Q ss_pred EEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
.+..+.. .+.++.+ ++++. ++++|+.|+.|++||+...+. ....+.
T Consensus 199 ~~~~h~~-~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~ 245 (383)
T 3ei3_B 199 KEKLHKA-KVTHAEF---NPRCDWLMATSSVDATVKLWDLRNIKD-----------------------------KNSYIA 245 (383)
T ss_dssp EEECSSS-CEEEEEE---CSSCTTEEEEEETTSEEEEEEGGGCCS-----------------------------TTCEEE
T ss_pred EeccCCC-cEEEEEE---CCCCCCEEEEEeCCCEEEEEeCCCCCc-----------------------------ccceEE
Confidence 7776553 4666766 57777 999999999999999982110 134444
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec--eEeecccc----------ceEEeEEC
Q 003208 251 RLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA----------RVWDCCLT 317 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~----------~v~~~~~~ 317 (839)
.+ +|...|.+++|+| ++++|++++.|+.|++||+++.... ..+.. .....|.. .+..++|+
T Consensus 246 ~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 246 EM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY 319 (383)
T ss_dssp EE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECB
T ss_pred Ee-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-----cccccccccccccccceEEeccCCCCceEEEec
Confidence 44 7999999999999 9999999999999999999887652 21110 01112222 33345554
Q ss_pred -CCEEEEEeCCCeEEEEcC-CCceEEEeeccc-CCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 318 -~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~-~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+..+ +++.|+.|++||+ +++.+..+..+. ...+..++|+|++++|++|+ ||.|++|+++.
T Consensus 320 ~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 320 PDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 2222 7789999999999 888999998743 22566779999999999997 99999999853
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-31 Score=283.00 Aligned_cols=322 Identities=11% Similarity=0.141 Sum_probs=237.2
Q ss_pred ceeeeeeEEEEecCCCCCC-CcceEEEeeCCeeEEEECCCCeeeeEEeeec----CceEEeEEecccccccCCC----cc
Q 003208 15 QYLGEISALCFVHLPSHLS-SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH----GIRLHGISCNFINCTEGSV----ST 85 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~-~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~~----~~ 85 (839)
.|.++|++++|+ |+... ...+++++.++.|+|||+.+++.+..++.+. ...|.+++|+ |+ ++
T Consensus 16 ~h~~~v~~i~~~--p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~~~ 86 (366)
T 3k26_A 16 DHNQPLFGVQFN--WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT-------YDSNTSHP 86 (366)
T ss_dssp TTCSCEEEEEEC--TTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE-------ECTTTCCE
T ss_pred CCCCceEEEEEe--cccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec-------cCCCCCCC
Confidence 378999999999 83111 1335555668899999999988887777543 3569999999 55 42
Q ss_pred ceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC
Q 003208 86 RVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (839)
Q Consensus 86 ~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~ 165 (839)
.+++++.|+.|++||+.. .+.+..+.+|...|++++|+| .++.+|++|+.|+.|++||+.
T Consensus 87 ---~l~~~~~dg~i~v~d~~~---------------~~~~~~~~~~~~~i~~~~~~~--~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 87 ---LLAVAGSRGIIRIINPIT---------------MQCIKHYVGHGNAINELKFHP--RDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp ---EEEEEETTCEEEEECTTT---------------CCEEEEEESCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETT
T ss_pred ---EEEEecCCCEEEEEEchh---------------ceEeeeecCCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEEee
Confidence 455556799999999875 456778889999999999998 357899999999999999999
Q ss_pred CCceEEEEe--cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 166 NSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 166 ~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
+++.+..+. ......+.++.+ ++++.+|++++.||.|++||++.++...........++++..........
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 219 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI---- 219 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE----
T ss_pred cCeEEEEecccccccCceeEEEE---CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee----
Confidence 999888873 233445677776 67899999999999999999985432211000000111111111111111
Q ss_pred ccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCC------CCCceeeeceEeeccccceEEeEEC
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD------SDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
.........+|...|.+++|+ +++|++++.|+.|++||+.+..... ......+ ..+.+|...|++++|+
T Consensus 220 -~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 220 -HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL--GRFDYSQCDIWYMRFS 294 (366)
T ss_dssp -CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE--EEEECSSCCSSCCCCE
T ss_pred -ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee--ccccccCCcEEEEEEc
Confidence 112334456799999999998 7799999999999999998764310 0001222 3677888999999887
Q ss_pred ----CCEEEEEeCCCeEEEEcC-CCc----eEEEeecc--cCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 318 ----DSFIITAGEDCTCRVWGS-DGK----QLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 318 ----~~~l~s~~~dg~i~vw~~-~~~----~~~~~~~h--~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+.+|++++.||.|++||+ .++ ....+..| .. +|++++|+|++++|++++.||.|++||+.
T Consensus 295 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 295 MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGA-AIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCS-CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCC-ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 579999999999999999 443 44577777 45 79999999999999999999999999974
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.8e-30 Score=285.22 Aligned_cols=348 Identities=13% Similarity=0.113 Sum_probs=242.8
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCC-CccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+..++++. .|+ .+++++.++..+|...|.+++|+ | +++ .+++++.|++|+|||+....... .
T Consensus 39 ~~~~~~~~-----~w~-~~g~~~~~~~~~h~~~V~~~~~s-------~~~~~---~l~s~s~dg~v~vwd~~~~~~~~-~ 101 (437)
T 3gre_A 39 QEIVRSPN-----MGN-LRGKLIATLMENEPNSITSSAVS-------PGETP---YLITGSDQGVIKIWNLKEIIVGE-V 101 (437)
T ss_dssp CCCCCCCC-----GGG-CCCCEEEEECTTTTSCEEEEEEE-------CSSSC---EEEEEETTSEEEEEEHHHHHTTC-C
T ss_pred cccccccc-----ccc-ccceEEeeeccCCCCceEEEEEC-------CCCCC---EEEEecCCceEEEeECcccccCc-c
Confidence 55555443 488 56888888844454579999999 7 763 56666679999999997521000 0
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC---CCceEEEEecC-----------Cce
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS---NSSIILEVHSP-----------ERC 179 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~---~~~~~~~~~~~-----------~~~ 179 (839)
.+....+ +|...|++++|+| ++++|++|+.|+.|++||+. +++.+.....+ ...
T Consensus 102 --------~~~~~~~-~h~~~v~~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (437)
T 3gre_A 102 --------YSSSLTY-DCSSTVTQITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169 (437)
T ss_dssp --------CSCSEEE-ECSSCEEEEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCC
T ss_pred --------cceeeec-cCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccccc
Confidence 1112222 5899999999999 99999999999999999994 55554433211 111
Q ss_pred eEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec--CCC
Q 003208 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG--HEG 257 (839)
Q Consensus 180 ~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~ 257 (839)
.+.++.+. .++++.+|++|+.|+.|++||++ ..+.+..+.+ |.+
T Consensus 170 ~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 170 YAVRMRAF-VNEEKSLLVALTNLSRVIIFDIR---------------------------------TLERLQIIENSPRHG 215 (437)
T ss_dssp CEEEEEEE-ECSSCEEEEEEETTSEEEEEETT---------------------------------TCCEEEEEECCGGGC
T ss_pred CceEEEEE-EcCCCCEEEEEeCCCeEEEEeCC---------------------------------CCeeeEEEccCCCCC
Confidence 22222221 35678999999999999999998 6777888888 899
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe-eccccceEEeEECC------CEEEEEeCCCeE
Q 003208 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTD------SFIITAGEDCTC 330 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~------~~l~s~~~dg~i 330 (839)
.|.+++|+|++++|++++.|+.|++||++.... .. .+ ..|..+|.+++|++ .++++++.|+.|
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~-----~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVL-----IR-----SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-----EE-----EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE-----EE-----EEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 999999999999999999999999999998654 22 33 37888999997763 489999999999
Q ss_pred EEEcC-CCceEEEeeccc-------------------------CCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCcc
Q 003208 331 RVWGS-DGKQLKMIKEHI-------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPG 383 (839)
Q Consensus 331 ~vw~~-~~~~~~~~~~h~-------------------------~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~ 383 (839)
++||+ +++.+..+..|. ...|++++|+ ++++|++|+.|+.|++||+.. ....
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 99999 788777776442 1258889999 778999999999999999954 3333
Q ss_pred CcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecC
Q 003208 384 SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSE 463 (839)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 463 (839)
.+.++.. ....+....+++...++... +......-..... .+
T Consensus 365 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~h 406 (437)
T 3gre_A 365 AVISPSR---------------------------FSDVFIPTQVTANLTMLLRK----------MKRTSTHSVDDSL-YH 406 (437)
T ss_dssp EEECC-----------------------------CCCEEEEEEEETTEEEEEEE----------CC--------------
T ss_pred EEecccc---------------------------cCceEEEEEeecceEEEEEe----------cccccccccCccc-cc
Confidence 3332210 11234445555544433332 0000000001111 23
Q ss_pred CCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEE
Q 003208 464 GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (839)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~ 500 (839)
...+.++++.+. +...+|++|+.||.|++|+
T Consensus 407 ~~~I~~i~~~~~------~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEV------DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEES------SSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeecc------CCceEEEEEcCCceEEEeC
Confidence 567888888765 2347999999999999994
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-30 Score=286.51 Aligned_cols=304 Identities=13% Similarity=0.137 Sum_probs=229.0
Q ss_pred ccccCCC-------ceeeeeeEEEEecCC-CCCCCcceEEEee-CCeeEEEECCC---Ceeee-EEeeecCceEEeEEec
Q 003208 8 EWRLDVG-------QYLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEA---GTLIR-PFQVFHGIRLHGISCN 74 (839)
Q Consensus 8 ~w~~~~~-------~~~~~Vt~l~f~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~---~~~~~-~~~~~~~~~v~~i~~~ 74 (839)
.|+.... .|.++|++++|+ | + +.+|++|+ |+.|+|||+.+ +.... .+...+..+|.+++|+
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s--~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 120 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVS--PGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI 120 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEE--CSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC
T ss_pred cccccceEEeeeccCCCCceEEEEEC--CCC----CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEe
Confidence 5775542 267899999999 9 7 78888887 89999999876 44221 2232345579999999
Q ss_pred ccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEecc--C--CCcceEEEEE--eeccCCCc
Q 003208 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--R--LSHWVFDVCF--LKVCNGNR 148 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~I~~~~~--~~~~~~~~ 148 (839)
|+++ .+++++.|+.|++||+....... .........+..+. . +...+.++.+ +| ++.
T Consensus 121 -------~~~~---~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~ 183 (437)
T 3gre_A 121 -------PNFD---AFAVSSKDGQIIVLKVNHYQQES----EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE---EKS 183 (437)
T ss_dssp -------TTSS---EEEEEETTSEEEEEEEEEEEETT----EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS---SCE
T ss_pred -------CCCC---EEEEEeCCCEEEEEEeccccCCc----eeeccccceeEEEEccCcccccCceEEEEEEcC---CCC
Confidence 7763 66666779999999996221000 00000112222221 2 5677888884 45 889
Q ss_pred EEEEEeCCCcEEEEecCCCceEEEEecC-CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 149 SLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 149 ~las~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
+|++|+.|+.|++||+.+++.+..+..+ ....+.++.+ ++++.+|++|+.||.|++||++
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~~~dg~i~iwd~~---------------- 244 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI---DEECCVLILGTTRGIIDIWDIR---------------- 244 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE---CTTSCEEEEEETTSCEEEEETT----------------
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE---CCCCCEEEEEcCCCeEEEEEcC----------------
Confidence 9999999999999999999999998874 4456777777 6889999999999999999998
Q ss_pred CCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec-
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS- 301 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~- 301 (839)
..+++..+. +|...|.+++|+| ++.+|++++.|+.|++||++++.. ...+..
T Consensus 245 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~ 302 (437)
T 3gre_A 245 -----------------FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-----QYAFINS 302 (437)
T ss_dssp -----------------TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-----EEEEESS
T ss_pred -----------------CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-----EEEEEcC
Confidence 677777775 7888999996654 677999999999999999987654 111110
Q ss_pred ------------------eEeec--cccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeec--------------
Q 003208 302 ------------------SVLYG--HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE-------------- 345 (839)
Q Consensus 302 ------------------~~~~~--h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~-------------- 345 (839)
..+.+ |...|++++|+ +.+|++++.|+.|++||+ +++.+..+.+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (437)
T 3gre_A 303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382 (437)
T ss_dssp SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEE
T ss_pred CCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEee
Confidence 01233 78889999998 568999999999999999 6666665554
Q ss_pred -----------------------ccCCceEEEEEccC--CCEEEEEeCCCcEEEEe
Q 003208 346 -----------------------HIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 346 -----------------------h~~~~i~~~~~~~~--~~~l~t~~~dg~i~iw~ 376 (839)
|.. .|.+++++++ +.+|++|+.||.|++|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 383 ANLTMLLRKMKRTSTHSVDDSLYHHD-IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp TTEEEEEEECC-------------CC-CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceEEEEEecccccccccCccccccc-ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666 6999999988 77999999999999995
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=4.9e-30 Score=278.98 Aligned_cols=318 Identities=15% Similarity=0.201 Sum_probs=235.5
Q ss_pred CcCccccccCCCc-------eeeeeeEEEEecCC-CCCCCcceEEEee-CCeeEEEECCCCeeeeEEee-----------
Q 003208 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----------- 62 (839)
Q Consensus 3 d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~----------- 62 (839)
++++++|++...+ |.++|++++|+ | + +.+|++|. |+.|+|||+.+++....+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s--~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIE--PVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEEC--TTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEe--cCC----CCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 5668889887654 88999999999 9 7 78888887 99999999998876665541
Q ss_pred -ecCceEEeEEecccccccCC-CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE
Q 003208 63 -FHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (839)
Q Consensus 63 -~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (839)
.+...|.+++|+ | +++ .+++++.|+.|++||+.. .+....+. +...+.++.+
T Consensus 96 ~~~~~~v~~~~~~-------~~~~~---~l~s~~~d~~i~iwd~~~---------------~~~~~~~~-~~~~~~~~~~ 149 (408)
T 4a11_B 96 DVHRYSVETVQWY-------PHDTG---MFTSSSFDKTLKVWDTNT---------------LQTADVFN-FEETVYSHHM 149 (408)
T ss_dssp TCCSSCEEEEEEC-------TTCTT---CEEEEETTSEEEEEETTT---------------TEEEEEEE-CSSCEEEEEE
T ss_pred ccCCCcEEEEEEc-------cCCCc---EEEEEeCCCeEEEeeCCC---------------Cccceecc-CCCceeeeEe
Confidence 144579999999 6 442 556666799999999975 33444444 6788999999
Q ss_pred eeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCC
Q 003208 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~ 219 (839)
+|...++.++++++.|+.|++||+.+++.+..+..+.. .+.++.+ ++++. ++++|+.||.|++||++........
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSW---SPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEE---CCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 99555566999999999999999999988888876554 3556666 56776 6899999999999999732211000
Q ss_pred CCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceee
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 299 (839)
. ..............+.+|...|.+++|+|++++|++++.|+.|++||+.+.... ...
T Consensus 226 ~-----------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~ 283 (408)
T 4a11_B 226 L-----------------DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT-----LVN 283 (408)
T ss_dssp C-----------------CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC-----CCC
T ss_pred c-----------------cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc-----eec
Confidence 0 000000011122233679999999999999999999999999999999987652 111
Q ss_pred eceEeecc-ccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 300 GSSVLYGH-NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 300 ~~~~~~~h-~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
........ .......... ...+++++.|+.|++||+ +++.+..+.+|.. .|.+++|+|++++|++++.||.|++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 00000111 1111122222 467778888999999999 8899999999988 799999999999999999999999999
Q ss_pred cCC
Q 003208 377 FQA 379 (839)
Q Consensus 377 ~~~ 379 (839)
++.
T Consensus 363 ~~~ 365 (408)
T 4a11_B 363 PSL 365 (408)
T ss_dssp ECC
T ss_pred CCC
Confidence 965
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.9e-29 Score=275.00 Aligned_cols=278 Identities=14% Similarity=0.226 Sum_probs=223.1
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeee-cCceEEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
..+|+|| ++ .+|++|.|++|+|||+.+|+.+..+..+ +...|++++|+ |+|+ .+++++.|+.
T Consensus 108 ~~~l~wS--~~-----n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-------pdg~---~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-------KEGN---YLAVGTSSAE 170 (420)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-------TTSS---EEEEEETTSC
T ss_pred ceeEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-------CCCC---EEEEEECCCe
Confidence 4578888 55 5888999999999999999988887753 34579999999 8884 5556667999
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-eEEEEecCC
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPE 177 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-~~~~~~~~~ 177 (839)
|+|||+.. .+.+..+.+|...|.++.+ ++.+|++|+.|+.+++||..... .+..+..+.
T Consensus 171 v~iWd~~~---------------~~~~~~~~~h~~~v~~~s~-----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 171 VQLWDVQQ---------------QKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EEEEETTT---------------TEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEEEcCC---------------CcEEEEEeCCCCceEEEee-----CCCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 99999975 5678889999999998876 45799999999999999998654 445555554
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
.. +..+.+ .+++.++++++.|+.|++|+...++. ....+.....|.+
T Consensus 231 ~~-~~~~~~---~~~g~~l~s~~~D~~v~i~~~~~~~~-----------------------------~~~~~~~~~~~~~ 277 (420)
T 4gga_A 231 QE-VCGLRW---APDGRHLASGGNDNLVNVWPSAPGEG-----------------------------GWVPLQTFTQHQG 277 (420)
T ss_dssp SC-EEEEEE---CTTSSEEEEEETTSCEEEEESSCCSS-----------------------------CSCCSEEECCCSS
T ss_pred cc-eeeeee---cCCCCeeeeeeccccceEEeeccccc-----------------------------cceeeeeecccCC
Confidence 33 444444 58899999999999999999872211 2234566788999
Q ss_pred CeEEEEEcCCCC-EEEE--EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEe--CCCeE
Q 003208 258 SIFRIEWSSCGS-KLVS--VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--EDCTC 330 (839)
Q Consensus 258 ~V~~l~~~~~~~-~l~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~--~dg~i 330 (839)
.|.+++|+|.+. .+++ |+.|++|++||+.++.. . ....+...+.++.|+ ++.+++++ .|+.|
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-----~------~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----L------SAVDAHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----E------EEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----c------eeeccccceeeeeecCCCCeEEEEEecCCCEE
Confidence 999999999664 4554 45899999999998765 2 333344667888887 56666654 79999
Q ss_pred EEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 331 ~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|||+ +++++..+.+|.+ .|++++|+|+|++|+||+.|++|++||+..
T Consensus 347 ~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999 8999999999998 699999999999999999999999999843
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.9e-31 Score=283.58 Aligned_cols=302 Identities=12% Similarity=0.084 Sum_probs=220.0
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC--eeeeEEeeecCceEEeEEecccccccCCCccceeeEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
+.++|++++|+ |+ +++|++|+ |+.|+|||+.++ +.+..+..|.. .|.+++|+ |+++ .+++
T Consensus 10 ~~~~v~~~~~s--~~----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~s 72 (377)
T 3dwl_C 10 LPKPSYEHAFN--SQ----RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWA-------PKSN---RIVT 72 (377)
T ss_dssp CSSCCSCCEEC--SS----SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEEC-------TTTC---CEEE
T ss_pred CCCcEEEEEEC--CC----CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEEe-------CCCC---EEEE
Confidence 45689999999 99 88999986 999999999988 77778877655 79999999 8874 5666
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc---e
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---I 169 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~---~ 169 (839)
++.|+.|++||+.... .......+.+|...|++++|+| ++++|++|+.|+.|++||+.+++ .
T Consensus 73 ~s~d~~v~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDG------------TWKQTLVLLRLNRAATFVRWSP---NEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EETTSSEEEC------------------CCCCEEECCCCSSCEEEEECCT---TSSCCEEEESSSCEEECCC-----CCC
T ss_pred EeCCCeEEEEEcCCCC------------ceeeeeEecccCCceEEEEECC---CCCEEEEEecCCeEEEEEECCccccee
Confidence 6779999999998632 1335677888999999999999 99999999999999999998876 3
Q ss_pred EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc-cccee
Q 003208 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ-HTAVN 248 (839)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 248 (839)
...+..+....+.++.+ ++++.+|++|+.|+.|++||+...+....... ..|... ...++
T Consensus 138 ~~~~~~~h~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~ 198 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDW---HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA----------------SVWGSRLPFNTV 198 (377)
T ss_dssp CEEECSSCCSCEEEEEE---CTTSSEEEEEESSSCEEEEEECCSSCC-CCCS----------------CSSCSCCCEEEE
T ss_pred eeEeecccCCCeEEEEE---cCCCCEEEEEeCCCEEEEEEEEecccCCCccc----------------cccccccchhhh
Confidence 66666644556777777 67899999999999999999963322111100 000000 02445
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeC
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE 326 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~ 326 (839)
+..+ +|.+.|.+++|+|++++|++++.|+.|++||+.+.... ...+ ..+.+|...|.+++|+ +.+|++++.
T Consensus 199 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 199 CAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP----PRAL--ITVKLSQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp EECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC----EEEC--CCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred hhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc----ceee--EeecCCCCceEEEEEcCCCCEEEEEcC
Confidence 5556 89999999999999999999999999999999887541 1112 3778899999999998 567777765
Q ss_pred CCeEEEEcCC-Cc--eE----------------------------------EEe----------------ecccCCceEE
Q 003208 327 DCTCRVWGSD-GK--QL----------------------------------KMI----------------KEHIGRGIWR 353 (839)
Q Consensus 327 dg~i~vw~~~-~~--~~----------------------------------~~~----------------~~h~~~~i~~ 353 (839)
++.+ +|+.. +. .. ..+ ..|.. .|++
T Consensus 272 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~-~i~~ 349 (377)
T 3dwl_C 272 YSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN-MIAT 349 (377)
T ss_dssp SSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSS-CEEE
T ss_pred CcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccc-eeEE
Confidence 5555 77662 11 00 111 12776 6999
Q ss_pred EEEccCC-C---EEEEEeCCCcEEEEec
Q 003208 354 CLYDSLS-S---LLVTAGFDSAIKVHQF 377 (839)
Q Consensus 354 ~~~~~~~-~---~l~t~~~dg~i~iw~~ 377 (839)
+++.+.. . .|+|||.||.|++||+
T Consensus 350 ~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 350 LRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9975543 3 6999999999999985
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2e-29 Score=293.49 Aligned_cols=291 Identities=18% Similarity=0.222 Sum_probs=227.6
Q ss_pred eeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-----ceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
.....+++|.+.|++++|+| .++++|+||+.|++|++||+.+. .....+.+|.. .+.++.+ ++++.+|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~---s~~g~~l~ 446 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVL---SSDGQFAL 446 (694)
T ss_dssp EEEEEEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEE---CTTSSEEE
T ss_pred chhhhcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEE---CCCCCEEE
Confidence 44567899999999999998 13579999999999999999753 23455555554 3556666 68999999
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 277 (839)
+|+.||.|++||+. .......+.+|...|.+++|+|++++|++++.|
T Consensus 447 sgs~Dg~v~vwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 493 (694)
T 3dm0_A 447 SGSWDGELRLWDLA---------------------------------AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493 (694)
T ss_dssp EEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEeCCCcEEEEECC---------------------------------CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 99999999999998 677788899999999999999999999999999
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC----CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceE
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~ 352 (839)
++|++||...... .. +. ....+|...|.+++|++ ..+++++.|++|++||+ .++....+.+|.+ .|+
T Consensus 494 ~~i~iwd~~~~~~-----~~-~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~ 565 (694)
T 3dm0_A 494 RTIKLWNTLGECK-----YT-IS-EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVS 565 (694)
T ss_dssp SCEEEECTTSCEE-----EE-EC-SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEE
T ss_pred CEEEEEECCCCcc-----ee-ec-cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEE
Confidence 9999999865432 11 11 12357899999999983 57999999999999999 7788889999998 699
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCC
Q 003208 353 RCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (839)
Q Consensus 353 ~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 431 (839)
+++|+|++++|++|+.||.|++||+.. ..+..+. ....|.+++|+|++
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-------------------------------~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-------------------------------ANSVIHALCFSPNR 614 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-------------------------------CSSCEEEEEECSSS
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-------------------------------CCCcEEEEEEcCCC
Confidence 999999999999999999999999954 2111111 12358999999999
Q ss_pred eEEEEeccceEEEEEecCCCCceeEEEeeecC------------------CCceEEeeecCCCCCCCCCCCcEEEEeCCC
Q 003208 432 TLYIATNHGYLYHTKLCDMDSVNWNKILQVSE------------------GMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (839)
Q Consensus 432 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~l~~g~~d 493 (839)
.+++++.++.+.+|++...... ..+..+. ...+.+++++++ +.+|++|+.|
T Consensus 615 ~~l~~~~~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd--------g~~l~sgs~D 683 (694)
T 3dm0_A 615 YWLCAATEHGIKIWDLESKSIV---EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD--------GSTLFSGYTD 683 (694)
T ss_dssp SEEEEEETTEEEEEETTTTEEE---EEECCCCC----------------CCCCEEEEEECTT--------SSEEEEEETT
T ss_pred cEEEEEcCCCEEEEECCCCCCh---hhhccccccccccccccccccCCceeEEeeeEEEcCC--------CCEEEEEcCC
Confidence 9999888888877766443211 1111100 012445566554 4899999999
Q ss_pred ccEEEEEEc
Q 003208 494 GNMTIVRVV 502 (839)
Q Consensus 494 g~i~l~~~~ 502 (839)
|.|++|++.
T Consensus 684 g~i~iW~i~ 692 (694)
T 3dm0_A 684 GVIRVWGIG 692 (694)
T ss_dssp SEEEEEEC-
T ss_pred CeEEEEecc
Confidence 999999874
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8.8e-30 Score=271.05 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=212.8
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCC--------eeEEEECCCCee--------eeE--EeeecCceEEeEEecccccc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGS--------QVLLYDLEAGTL--------IRP--FQVFHGIRLHGISCNFINCT 79 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~--------~v~iwd~~~~~~--------~~~--~~~~~~~~v~~i~~~~~~~~ 79 (839)
.||+|++|+ || +++|++|.++ .|++|++..+.. ... +.. +...|.+++++
T Consensus 15 ~PV~sv~fs--~d----g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~~~~----- 82 (365)
T 4h5i_A 15 YPAYGAKFL--NN----DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAIDAS----- 82 (365)
T ss_dssp SCEEEEEEE--ET----TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEEEEE-----
T ss_pred CCEEEEEEe--CC----CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEEEeC-----
Confidence 589999999 99 8999998732 499999876532 111 222 23357777776
Q ss_pred cCCCccceeeEEEEE-----------cCcEEEEEEeeccCCCCCCCCCccccceeeeE-----eccCCCcceEEEEEeec
Q 003208 80 EGSVSTRVTFEVALF-----------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-----SLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 80 ~~~~~~~~~~~l~~~-----------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~I~~~~~~~~ 143 (839)
++ .+++.+ .++.+++|++..... ..+... ....+...+.+++|+|
T Consensus 83 --~~-----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~fSp- 143 (365)
T 4h5i_A 83 --KG-----IILVGCNENSTKITQGKGNKHLRKFKYDKVND-----------QLEFLTSVDFDASTNADDYTKLVYISR- 143 (365)
T ss_dssp --TT-----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-----------EEEEEEEECSSCCCCTTCCEEEEEECT-
T ss_pred --CC-----EEEEEECCCccEEEEecCCCcEEEEEecCCCc-----------eEEEeeeeceeecCCcccCEEEEEEcC-
Confidence 32 333332 367899999875431 011111 2234557799999999
Q ss_pred cCCCcEEEEEe--CCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCC
Q 003208 144 CNGNRSLAIGC--SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (839)
Q Consensus 144 ~~~~~~las~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~ 221 (839)
++++||+++ .|++|+|||+.+++.+..+..+. .++++.| +|++.++++++.+ .+++|+..
T Consensus 144 --Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~f---spdg~~l~s~s~~-~~~~~~~~---------- 205 (365)
T 4h5i_A 144 --EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHF---STDGKVVAYITGS-SLEVISTV---------- 205 (365)
T ss_dssp --TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS--CCCEEEE---CTTSSEEEEECSS-CEEEEETT----------
T ss_pred --CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEE---ccCCceEEeccce-eEEEEEec----------
Confidence 999887554 68999999999999988876432 3667776 7999999999855 56666655
Q ss_pred CCCccCCCCCCCceeeEeecccccceee--EEEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcccCccCCCCC
Q 003208 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNL--FRLVGHEGSIFRIEWSSCGSKLVSVSDDR----SARIWEVRAEYWKDSDS 295 (839)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~d~----~i~iwd~~~~~~~~~~~ 295 (839)
....+ ....+|...|.+++|+|+++++++++.|+ .+++|++.....
T Consensus 206 -----------------------~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----- 257 (365)
T 4h5i_A 206 -----------------------TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----- 257 (365)
T ss_dssp -----------------------TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----
T ss_pred -----------------------cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----
Confidence 22222 23457899999999999999999999887 688898876543
Q ss_pred ceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEe-ecccCCceEEEEEccCCCEEEEEeCCCc
Q 003208 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (839)
Q Consensus 296 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~-~~h~~~~i~~~~~~~~~~~l~t~~~dg~ 371 (839)
.......+.+|...|++++|+ +++|++|+.|++|+|||+ +++++..+ .+|.. +|++++|+|||++|++|+.|++
T Consensus 258 -~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 258 -SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp -EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSE
T ss_pred -cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCe
Confidence 111113677899999999999 689999999999999999 78888875 67888 7999999999999999999999
Q ss_pred EEEEecCC
Q 003208 372 IKVHQFQA 379 (839)
Q Consensus 372 i~iw~~~~ 379 (839)
|+||++..
T Consensus 336 vrvw~ip~ 343 (365)
T 4h5i_A 336 IHIIKLPL 343 (365)
T ss_dssp EEEEECCT
T ss_pred EEEEEcCC
Confidence 99999953
No 71
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.4e-29 Score=258.49 Aligned_cols=276 Identities=16% Similarity=0.224 Sum_probs=228.2
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|.++|++++|. + +.+|++|+ |+.|+|||+.+++....+..+.. .|.+++|+ |+++ .+++++
T Consensus 17 h~~~v~~~~~~---~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~~~~ 78 (313)
T 3odt_A 17 HDQDVRDVVAV---D----DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCYD-------SEKE---LLLFGG 78 (313)
T ss_dssp CSSCEEEEEEE---E----TTEEEEEETTSEEEEEEESSSEEEEEEEECSS-CEEEEEEE-------TTTT---EEEEEE
T ss_pred CCCCcEEEEec---C----CCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-cEEEEEEC-------CCCC---EEEEec
Confidence 78999999995 3 45677766 89999999999998888887655 79999999 8874 666667
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|+.|++|++.... ..+.+..+.+|...|.+++|. +++|++++.|+.|++|| .++....+.
T Consensus 79 ~dg~i~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 79 KDTMINGVPLFATS------------GEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp TTSCEEEEETTCCT------------TSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred CCCeEEEEEeeecC------------CCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 79999999987533 135566778999999999983 46899999999999999 566666666
Q ss_pred cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 175 ~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
.+... +.++.+. ++++.++++++.||.|++||.. +....+..
T Consensus 140 ~~~~~-v~~~~~~--~~~~~~l~~~~~d~~i~i~d~~-----------------------------------~~~~~~~~ 181 (313)
T 3odt_A 140 AHNAS-VWDAKVV--SFSENKFLTASADKTIKLWQND-----------------------------------KVIKTFSG 181 (313)
T ss_dssp CCSSC-EEEEEEE--ETTTTEEEEEETTSCEEEEETT-----------------------------------EEEEEECS
T ss_pred cCCCc-eeEEEEc--cCCCCEEEEEECCCCEEEEecC-----------------------------------ceEEEEec
Confidence 55433 4455552 3378899999999999999943 34555666
Q ss_pred -CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-CEEEEEeCCCeEEE
Q 003208 255 -HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRV 332 (839)
Q Consensus 255 -h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~v 332 (839)
|...|.+++|+|++. +++++.|+.|++||+++.+. . ..+.+|...|.+++|++ ..+++++.||.|++
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~i 250 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-----L-----RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRI 250 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE-----E-----EEEECCSSCEEEEEECTTSCEEEEETTSEEEE
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh-----h-----hhhhcCCceEEEEEEecCCCEEEEecCCEEEE
Confidence 999999999999988 99999999999999988655 2 36778999999999993 48999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
||+ +++.+..+..|.. +|.+++|+|+++ +++++.||.|++|+++.
T Consensus 251 wd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 251 WSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 999 8889999999987 699999999998 66799999999999965
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.5e-29 Score=260.05 Aligned_cols=277 Identities=14% Similarity=0.212 Sum_probs=222.8
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeee-cCceEEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
..+|+|| ++ .+|++|.|++|+|||+++|+.+..++.+ +...|.+++|+ |+++ .+++++.|++
T Consensus 28 ~~~l~WS--~~-----~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-------~~~~---~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-------KEGN---YLAVGTSSAE 90 (318)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-------TTSS---EEEEEETTSE
T ss_pred ceEEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-------CCCC---EEEEEECCCc
Confidence 4689999 77 4888889999999999999998888753 34579999999 8874 5666677999
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce-EEEEecCC
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~-~~~~~~~~ 177 (839)
|++|++.. ++.+..+.+|...+.++.+ ++..+++++.++.+++|+...... +..+..+.
T Consensus 91 v~iw~~~~---------------~~~~~~~~~h~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (318)
T 4ggc_A 91 VQLWDVQQ---------------QKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150 (318)
T ss_dssp EEEEETTT---------------TEEEEEEECCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEeecCC---------------ceeEEEecCccceEEEeec-----CCCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence 99999985 5678888999998887655 567899999999999999987644 44455444
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
. .+..+.+ .+++.++++++.|+.|++||+..++. ..........|.+
T Consensus 151 ~-~~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 151 Q-EVCGLRW---APDGRHLASGGNDNLVNVWPSAPGEG-----------------------------GWVPLQTFTQHQG 197 (318)
T ss_dssp S-CEEEEEE---CTTSSEEEEEETTSCEEEEESSCBTT-----------------------------BSCCSEEECCCCS
T ss_pred C-ceEEEEE---cCCCCEEEEEecCcceeEEECCCCcc-----------------------------cccceeeecccCC
Confidence 3 3444444 57889999999999999999973221 1233455677899
Q ss_pred CeEEEEEcCCCCEE---EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE--eCCCeE
Q 003208 258 SIFRIEWSSCGSKL---VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA--GEDCTC 330 (839)
Q Consensus 258 ~V~~l~~~~~~~~l---~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~--~~dg~i 330 (839)
.|.++.++|++..+ ++++.+++|++||...... .....+...+..+.|. ++.++++ +.|+.|
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----------cccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence 99999999976543 4667899999999988655 2555677788888887 4666554 479999
Q ss_pred EEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 331 ~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
++||+ +++++.++.+|.+ .|++++|+|++++|++|+.||+|++||+.
T Consensus 267 ~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 267 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999 8999999999998 79999999999999999999999999984
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=3.3e-29 Score=258.88 Aligned_cols=253 Identities=17% Similarity=0.249 Sum_probs=197.3
Q ss_pred EEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEE
Q 003208 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (839)
Q Consensus 59 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (839)
.+..|.. .|.+++|+ |+|+ .+++++.|++|+||++.... .+++..+.+|.++|+++
T Consensus 4 ~~~~h~~-~V~~~~~s-------~~g~---~las~s~D~~v~iw~~~~~~-------------~~~~~~l~gH~~~V~~v 59 (297)
T 2pm7_B 4 IANAHNE-MIHDAVMD-------YYGK---RMATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWRV 59 (297)
T ss_dssp ECCSCSS-CEEEEEEC-------TTSS---EEEEEETTSCEEEEEBCSSC-------------BCCCEEECCCSSCEEEE
T ss_pred eccCCcC-ceEEEEEC-------CCCC---EEEEEeCCCEEEEEecCCCC-------------cEEEEEEccccCCeEEE
Confidence 3444444 79999999 8884 56666779999999997432 45678889999999999
Q ss_pred EEeeccCCCcEEEEEeCCCcEEEEecCCCc--eEEEEecCCceeEEEEeeccCCcc--ceEEEEeecCCeEEEEEeeccc
Q 003208 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 139 ~~~~~~~~~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~--~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
+|+|. .++++||+|+.|++|++||+.+++ .+..+..+.. .+.++.+ +|+ +.+|++|+.|+.|++||++.+
T Consensus 60 ~~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~---~p~~~g~~l~s~s~d~~v~~wd~~~~- 133 (297)
T 2pm7_B 60 DWAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-SVNSVQW---APHEYGPMLLVASSDGKVSVVEFKEN- 133 (297)
T ss_dssp EECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-CEEEEEE---CCGGGCSEEEEEETTSEEEEEEBCSS-
T ss_pred EecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-ceeEEEe---CcCCCCcEEEEEECCCcEEEEEecCC-
Confidence 99861 137899999999999999998764 4444544433 3566666 454 789999999999999999711
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC-------------CCEEEEEeCCCcEE
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-------------GSKLVSVSDDRSAR 281 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-------------~~~l~s~s~d~~i~ 281 (839)
.......+.+|...|.+++|+|+ +++|++|+.|++|+
T Consensus 134 ------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~ 183 (297)
T 2pm7_B 134 ------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183 (297)
T ss_dssp ------------------------------SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEE
T ss_pred ------------------------------CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEE
Confidence 01123567899999999999997 57999999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEEEeCCCeEEEEcCCC-c---eEEEe--ecccCCc
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGSDG-K---QLKMI--KEHIGRG 350 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~~~dg~i~vw~~~~-~---~~~~~--~~h~~~~ 350 (839)
+||++..... .... ..+.+|...|.+++|++ .+|++++.|++|++||+.. . ....+ ..|.. .
T Consensus 184 lwd~~~~~~~----~~~~--~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~ 256 (297)
T 2pm7_B 184 IWKYNSDAQT----YVLE--STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-V 256 (297)
T ss_dssp EEEEETTTTE----EEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-C
T ss_pred EEEEcCCCce----EEEE--EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC-c
Confidence 9999875420 1111 36789999999999994 5899999999999999832 1 12233 35666 6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
|++++|+|++++|++++.||.|++|+..
T Consensus 257 v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 257 LWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999999999999999999999999974
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.5e-30 Score=283.18 Aligned_cols=286 Identities=14% Similarity=0.191 Sum_probs=208.1
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEE--eeecCceEEeEEecccccccCC-CccceeeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF--QVFHGIRLHGISCNFINCTEGS-VSTRVTFEV 91 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l 91 (839)
|...|+||+|+ |. ...+|++|+ ||.|+|||+.+++....+ ..| ...|.+|+|+ | +++ .++
T Consensus 118 ~~~~V~~l~~~--P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~-------p~~~~---~l~ 181 (435)
T 4e54_B 118 FDRRATSLAWH--PT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA-GGSITGLKFN-------PLNTN---QFY 181 (435)
T ss_dssp CSSCEEEEEEC--SS---CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS-SCCCCEEEEC-------SSCTT---EEE
T ss_pred CCCCEEEEEEe--CC---CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC-CCCEEEEEEe-------CCCCC---EEE
Confidence 66789999999 95 367888888 899999999887654444 344 4479999999 5 342 566
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
+++.|++|+|||+.... .........+..++.+++|+| ++.+|++|+.|+.|++||+.. +.+.
T Consensus 182 s~s~D~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~g~~dg~i~~wd~~~-~~~~ 244 (435)
T 4e54_B 182 ASSMEGTTRLQDFKGNI-------------LRVFASSDTINIWFCSLDVSA---SSRMVVTGDNVGNVILLNMDG-KELW 244 (435)
T ss_dssp EECSSSCEEEEETTSCE-------------EEEEECCSSCSCCCCCEEEET---TTTEEEEECSSSBEEEEESSS-CBCC
T ss_pred EEeCCCEEEEeeccCCc-------------eeEEeccCCCCccEEEEEECC---CCCEEEEEeCCCcEeeeccCc-ceeE
Confidence 66779999999987432 333344445567889999999 999999999999999999964 4455
Q ss_pred EEecCCceeEEEEeeccCCccc-eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
.+..+.. .+.++.+ +|++ .++++|+.|+.|++||++..+ ....+.
T Consensus 245 ~~~~h~~-~v~~v~~---~p~~~~~~~s~s~d~~v~iwd~~~~~------------------------------~~~~~~ 290 (435)
T 4e54_B 245 NLRMHKK-KVTHVAL---NPCCDWFLATASVDQTVKIWDLRQVR------------------------------GKASFL 290 (435)
T ss_dssp CSBCCSS-CEEEEEE---CTTCSSEEEEEETTSBCCEEETTTCC------------------------------SSSCCS
T ss_pred EEecccc-eEEeeee---cCCCceEEEEecCcceeeEEeccccc------------------------------ccceEE
Confidence 5555443 3667776 4554 488899999999999987211 111222
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc------ceEEeEEC--CCEEE
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLT--DSFII 322 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~~--~~~l~ 322 (839)
...+|...|.+++|+|++++|++++.|++|++||+.+... .. .+..|.. .+..+.|+ +..++
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC-----PL-----GLIPHPHRHFQHLTPIKAAWHPRYNLIV 360 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS-----EE-----EECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc-----ce-----EEecccccccccceeEEEEEcCCCCEEE
Confidence 3457999999999999999999999999999999988655 22 2222211 12223343 23343
Q ss_pred EE------------eCCCeEEEEcC-CCceEEEeecccCCceEEE-EEccCCCEEEEEeCCCcEEEEecCC
Q 003208 323 TA------------GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC-LYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 323 s~------------~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~-~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
++ ..++.|++||. +++.+..+..++...|.++ +|+|+|.+|++|+ |+.|++|+++.
T Consensus 361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 33 24468999999 7888888764433368887 6999999998876 88999999854
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.2e-29 Score=275.95 Aligned_cols=269 Identities=19% Similarity=0.294 Sum_probs=226.5
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
|..+|+|++|. +.++++|. |+.|++||..+++.+..+..|.. .|.++++. .+ .+++++
T Consensus 132 ~~~~v~~~~~d--------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~-------~~-----~l~sg~ 190 (435)
T 1p22_A 132 TSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYD-------ER-----VIITGS 190 (435)
T ss_dssp SCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECC-------SS-----EEEEEE
T ss_pred CCCcEEEEEEC--------CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-cEEEEEEC-------CC-----EEEEEc
Confidence 55679999876 56787777 89999999999999999987665 69999885 33 677777
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceE---E
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII---L 171 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~---~ 171 (839)
.|+.|++||+.. ++.+..+.+|...|.+++|++ .++++|+.|+.|++||+.++... .
T Consensus 191 ~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~ 250 (435)
T 1p22_A 191 SDSTVRVWDVNT---------------GEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRR 250 (435)
T ss_dssp TTSCEEEEESSS---------------CCEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred CCCeEEEEECCC---------------CcEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeee
Confidence 899999999975 457788899999999999964 58999999999999999887655 3
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (839)
.+..+. ..+.++.+ ++.++++|+.||.|++||+. ..+.+..
T Consensus 251 ~~~~~~-~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~---------------------------------~~~~~~~ 291 (435)
T 1p22_A 251 VLVGHR-AAVNVVDF-----DDKYIVSASGDRTIKVWNTS---------------------------------TCEFVRT 291 (435)
T ss_dssp EECCCS-SCEEEEEE-----ETTEEEEEETTSEEEEEETT---------------------------------TCCEEEE
T ss_pred EecCCC-CcEEEEEe-----CCCEEEEEeCCCeEEEEECC---------------------------------cCcEEEE
Confidence 333443 34555554 67899999999999999998 6778888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEE
Q 003208 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (839)
Q Consensus 252 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~ 331 (839)
+.+|...|.++.| +++++++++.|+.|++||++++.. . ..+.+|...|.+++|.+.++++|+.||.|+
T Consensus 292 ~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~-----~-----~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-----L-----RVLEGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE-----E-----EEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE-----E-----EEEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 9999999999999 467999999999999999998765 2 367789999999999999999999999999
Q ss_pred EEcC-CCc---------eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 332 VWGS-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 332 vw~~-~~~---------~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+||+ .++ ++..+..|.+ .|.+++| ++.+|++|+.||.|++||+..
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 9998 443 7888899988 6999999 678899999999999999954
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.1e-29 Score=268.68 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=223.7
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i 99 (839)
+.+++++ + +.+++++.|+.|++||+.+++....+...+...|.+++|+ |+++ .+++++.|+.|
T Consensus 96 ~~~~~~s--~-----~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s-------~~~~---~l~~~~~dg~i 158 (401)
T 4aez_A 96 LNLLDWS--N-----LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS-------HDGS---FLSVGLGNGLV 158 (401)
T ss_dssp CBCEEEC--T-----TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC-------TTSS---EEEEEETTSCE
T ss_pred EEEEeec--C-----CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC-------CCCC---EEEEECCCCeE
Confidence 4456666 3 3566667799999999999998888887566689999999 8873 55566679999
Q ss_pred EEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC-CCceEEEEecCCc
Q 003208 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIILEVHSPER 178 (839)
Q Consensus 100 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~ 178 (839)
++||+.. .+.+..+.+|...|.+++|++ ++|++|+.|+.|++||+. ....+..+..+..
T Consensus 159 ~iwd~~~---------------~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 159 DIYDVES---------------QTKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EEEETTT---------------CCEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECcC---------------CeEEEEecCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999975 456778889999999999954 689999999999999998 4555666665543
Q ss_pred eeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCC
Q 003208 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (839)
Q Consensus 179 ~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 258 (839)
.+.++.+ ++++.+|++|+.|+.|++||+. ...++..+.+|...
T Consensus 219 -~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~~~ 261 (401)
T 4aez_A 219 -EVCGLAW---RSDGLQLASGGNDNVVQIWDAR---------------------------------SSIPKFTKTNHNAA 261 (401)
T ss_dssp -CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------CSSEEEEECCCSSC
T ss_pred -CeeEEEE---cCCCCEEEEEeCCCeEEEccCC---------------------------------CCCccEEecCCcce
Confidence 4566666 5789999999999999999998 66777888899999
Q ss_pred eEEEEEcCCCC-EEEEEe--CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE--eCCCeEE
Q 003208 259 IFRIEWSSCGS-KLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA--GEDCTCR 331 (839)
Q Consensus 259 V~~l~~~~~~~-~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~--~~dg~i~ 331 (839)
|.+++|+|++. .+++++ .|+.|++||+.++.. . ....+...|.+++|+ +..++++ +.||.|+
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----~------~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----V------NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----E------EEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----E------EEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 99999999775 555554 799999999988765 2 333467889999998 5788884 4899999
Q ss_pred EEcC-CCceE--EEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 332 VWGS-DGKQL--KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 332 vw~~-~~~~~--~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|++ .++.. ..+.+|.. .|.+++|+|++.+|++++.||.|++|++..
T Consensus 331 v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999 54433 34667887 699999999999999999999999999954
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=5.7e-29 Score=269.53 Aligned_cols=312 Identities=10% Similarity=0.087 Sum_probs=232.9
Q ss_pred EEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEE
Q 003208 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (839)
Q Consensus 59 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (839)
.++.|. ..|.+++|+ |+ .+++++.|+.|++|++...... .....+..+.+|...|+++
T Consensus 11 ~~~~h~-~~i~~~~~~-------~~-----~l~s~~~dg~i~iw~~~~~~~~---------~~~~~~~~~~~h~~~v~~~ 68 (397)
T 1sq9_A 11 AGKAHD-ADIFSVSAC-------NS-----FTVSCSGDGYLKVWDNKLLDNE---------NPKDKSYSHFVHKSGLHHV 68 (397)
T ss_dssp ESSCSS-SCEEEEEEC-------SS-----EEEEEETTSEEEEEESBCCTTC---------CGGGGEEEEECCTTCEEEE
T ss_pred hhhhhh-cCeEEEEec-------CC-----eEEEEcCCCEEEEEECCCcccc---------cCCCcceEEecCCCcEEEE
Confidence 344444 479999999 63 7888888999999999863210 0134567778999999999
Q ss_pred EEeeccCC----C---cEEEEEeCCCcEEEEecCCCce-----EEEEecCC----ceeEEEEeeccCC-ccceE-EEEee
Q 003208 139 CFLKVCNG----N---RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPE----RCLLYSMKLWGDN-LEALR-IASGT 200 (839)
Q Consensus 139 ~~~~~~~~----~---~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~----~~~~~s~~~~~~~-~~~~~-l~sg~ 200 (839)
+|+| + + .+|++++.|+.|++||+.+++. +..+..+. ...+.++.+.... +++.+ |++++
T Consensus 69 ~~~~---~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 145 (397)
T 1sq9_A 69 DVLQ---AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD 145 (397)
T ss_dssp EEEE---EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred EEec---ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe
Confidence 9999 8 8 9999999999999999998876 77776653 3557777772111 77888 99999
Q ss_pred cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE-----EE-------ecCCCCeEEEEEcCCC
Q 003208 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-----RL-------VGHEGSIFRIEWSSCG 268 (839)
Q Consensus 201 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~h~~~V~~l~~~~~~ 268 (839)
.||.|++||+....... ..+.+. .+ ..|...|.+++|+|++
T Consensus 146 ~dg~i~iwd~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADES---------------------------NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp TTSCEEEEEEESSSSHH---------------------------HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred CCCcEEEEeCCcccccc---------------------------ccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 99999999998200000 022222 44 4589999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec---c---ccceEEeEEC--CCEEEEEeCC---CeEEEEcC-C
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---H---NARVWDCCLT--DSFIITAGED---CTCRVWGS-D 336 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~-~ 336 (839)
.+++++.|+.|++||+++... . ..+.. | ...|.+++|+ +.+|++++.| +.|++||+ +
T Consensus 199 -~l~~~~~dg~i~i~d~~~~~~-----~-----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 199 -LIATGFNNGTVQISELSTLRP-----L-----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp -EEEEECTTSEEEEEETTTTEE-----E-----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred -eEEEEeCCCcEEEEECCCCce-----e-----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 999999999999999987654 2 25556 8 8999999998 6899999999 99999999 7
Q ss_pred CceEEEeec-------------ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcC------CCCcccccCC
Q 003208 337 GKQLKMIKE-------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE------SHPEAKEFNG 396 (839)
Q Consensus 337 ~~~~~~~~~-------------h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~------~~~~~~~~~~ 396 (839)
++.+..+.. |.. .|.+++|+|++++|++++.||.|++||++. ..+..+. ++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----- 341 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED----- 341 (397)
T ss_dssp CCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG-----
T ss_pred CcccceeccCcccccccccccccCC-cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh-----
Confidence 888899988 887 799999999999999999999999999954 3333332 11000
Q ss_pred CcceEEeecCCCccceeeccCCCcceEEEEEecCC-----------eEEEEeccceEEEEEecC
Q 003208 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-----------TLYIATNHGYLYHTKLCD 449 (839)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~g~i~~~~~~~ 449 (839)
...........|...|++++|+|++ .+++++.+|.+..|++..
T Consensus 342 ----------~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 342 ----------ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp ----------CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ----------hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 0000000112236789999999996 566677899998877643
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.3e-29 Score=266.36 Aligned_cols=306 Identities=14% Similarity=0.194 Sum_probs=229.7
Q ss_pred eEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEe--ccCCCcce
Q 003208 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--LPRLSHWV 135 (839)
Q Consensus 58 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~I 135 (839)
..+...+..+|.+++|+|.. +++. ..++++++++.|++|++..... ...+.. ...|...|
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~----~~~~--~~~~~~~~~~~v~vw~~~~~~~------------~~~~~~~~~~~~~~~v 72 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHS----KEGD--PLVFATVGSNRVTLYECHSQGE------------IRLLQSYVDADADENF 72 (366)
T ss_dssp EEEECTTCSCEEEEEECTTC----CTTS--CEEEEEEETTEEEEEEECGGGC------------EEEEEEEECSCTTCCE
T ss_pred EEeecCCCCceEEEEEeccc----CCCC--ceEEEECCCCEEEEEEcCCCcE------------EEeeeeccccCCCCcE
Confidence 34444455689999999320 1231 1577777888999999986430 222222 22377889
Q ss_pred EEEEEeeccCC----CcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEe
Q 003208 136 FDVCFLKVCNG----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 136 ~~~~~~~~~~~----~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~ 210 (839)
++++|+| + +.+|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++ ++.+|++|+.||.|++||+
T Consensus 73 ~~~~~~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~---~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 73 YTCAWTY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKF---HPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp EEEEEEE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEET
T ss_pred EEEEecc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEE---CCCCCCEEEEEeCCCeEEEEEe
Confidence 9999999 6 67999999999999999999999888876543 4666766 46 7899999999999999999
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
. ..+.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 146 ~---------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 146 Q---------------------------------TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp T---------------------------------TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred e---------------------------------cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 8 66667777 68999999999999999999999999999999987
Q ss_pred CccCCCC----------------Ccee--eeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-CC-----------
Q 003208 288 EYWKDSD----------------SIEE--VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DG----------- 337 (839)
Q Consensus 288 ~~~~~~~----------------~~~~--~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~----------- 337 (839)
.+..... .... .......+|...|.+++|+++++++++.|+.|++||+ .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 272 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 272 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCC
Confidence 5431000 0000 0001334599999999999999999999999999998 43
Q ss_pred ---ceEEEeecccCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccce
Q 003208 338 ---KQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (839)
Q Consensus 338 ---~~~~~~~~h~~~~i~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (839)
..+..+..|.. .|++++|+|+ +++|++|+.||.|++||++...... ...
T Consensus 273 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------------------~~~ 326 (366)
T 3k26_A 273 SNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-------------------------AKC 326 (366)
T ss_dssp CCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-------------------------CEE
T ss_pred cchheeccccccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-------------------------ccc
Confidence 23777888887 6999999999 9999999999999999996521100 001
Q ss_pred eeccCC--CcceEEEEEecCCeEE-EEeccceEEEEEe
Q 003208 413 RLTDSK--SEYVRCLHLTSEDTLY-IATNHGYLYHTKL 447 (839)
Q Consensus 413 ~~~~~~--~~~v~~~~~~~~~~~~-~~~~~g~i~~~~~ 447 (839)
..+..+ ...|++++|+|++.++ +++.+|.+.+|++
T Consensus 327 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 111222 4679999999998655 5567888887765
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=4.5e-29 Score=257.91 Aligned_cols=255 Identities=16% Similarity=0.174 Sum_probs=194.5
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC--CeeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
.|.++|++++|+ |+ +++|++|+ |++|+|||+.+ ++.+.++..|.. +|.+++|++. .+++ .++
T Consensus 7 ~h~~~V~~~~~s--~~----g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~-----~~g~---~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMD--YY----GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILA 71 (297)
T ss_dssp SCSSCEEEEEEC--TT----SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCG-----GGCS---EEE
T ss_pred CCcCceEEEEEC--CC----CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCC-----CcCC---EEE
Confidence 378899999999 99 88888888 99999999974 467788887665 7999999821 1342 556
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC--CcEEEEEeCCCcEEEEecCCCce
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~las~~~d~~i~vwd~~~~~~ 169 (839)
+++.|++|+|||+..+. ...+..+.+|...|.+++|+| + +.+|++|+.|+.|++||+.+...
T Consensus 72 s~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~v~~v~~~p---~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEETTTEEEEEEBSSSC-------------BCCCEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EEcCCCEEEEEEcCCCc-------------eEEEEEeecCCCceeEEEeCc---CCCCcEEEEEECCCcEEEEEecCCCc
Confidence 66779999999997543 345567788999999999999 6 78999999999999999987532
Q ss_pred --EEEEecCCceeEEEEeeccCC----------ccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceee
Q 003208 170 --ILEVHSPERCLLYSMKLWGDN----------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (839)
Q Consensus 170 --~~~~~~~~~~~~~s~~~~~~~----------~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (839)
...+..+. ..+.++.+.... +++.+|++|+.|+.|++||++.++
T Consensus 136 ~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~----------------------- 191 (297)
T 2pm7_B 136 TSPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------------------- 191 (297)
T ss_dssp BCCEEEECCS-SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-----------------------
T ss_pred eeeeeeeccc-CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----------------------
Confidence 23344443 235566653211 125799999999999999998111
Q ss_pred EeecccccceeeEEEecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe
Q 003208 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (839)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 314 (839)
........+.+|.+.|.+++|+|++ .+|++++.|++|++||++..... .. ........|...|+++
T Consensus 192 ------~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~----~~-~~~~~~~~~~~~v~~~ 260 (297)
T 2pm7_B 192 ------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP----WK-KTLLKEEKFPDVLWRA 260 (297)
T ss_dssp ------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC----CE-EEESSSSCCSSCEEEE
T ss_pred ------ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc----cc-eeeeecccCCCcEEEE
Confidence 0122566788999999999999984 78999999999999999764320 01 0001125678899999
Q ss_pred EEC--CCEEEEEeCCCeEEEEcC
Q 003208 315 CLT--DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 315 ~~~--~~~l~s~~~dg~i~vw~~ 335 (839)
+|+ +++|++++.|+.|++|+.
T Consensus 261 ~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 261 SWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EECSSSCCEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEEEcCCCcEEEEEE
Confidence 998 689999999999999987
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=262.48 Aligned_cols=312 Identities=12% Similarity=0.146 Sum_probs=228.6
Q ss_pred CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE----cCcEEEEEEeeccCCCCCCCCCccccceeeeEecc
Q 003208 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP 129 (839)
Q Consensus 54 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (839)
.+.+..+...+...|.+++|+ |++. .+++++ +|+.|+||++.... ..... ..
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~-------p~~~---~l~~~~s~~~~d~~v~iw~~~~~~-------------~~~~~-~~ 62 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWV-------PCSA---KFVTMGNFARGTGVIQLYEIQHGD-------------LKLLR-EI 62 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEEC-------TTSS---EEEEEEC--CCCEEEEEEEECSSS-------------EEEEE-EE
T ss_pred hHHhhhhccCCCCceEEEEEc-------CCCc---eEEEecCccCCCcEEEEEeCCCCc-------------cccee-ee
Confidence 344444433355589999999 8773 555555 38999999998643 22222 23
Q ss_pred CCCcceEEEEEeeccCC---CcEEEEEeCCCcEEEEecCCCc-eEEEEecCCceeEEEEeec---cCCccceEEEEeecC
Q 003208 130 RLSHWVFDVCFLKVCNG---NRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLW---GDNLEALRIASGTIY 202 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~---~~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~s~~~~---~~~~~~~~l~sg~~d 202 (839)
+|...|++++|+| + +.+|++|+.|+.|++||+.+++ .+..+..+.. .+.++.+. ..++++.+|++++.|
T Consensus 63 ~~~~~v~~~~~~~---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 63 EKAKPIKCGTFGA---TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EESSCEEEEECTT---CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred cccCcEEEEEEcC---CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCC
Confidence 7899999999999 6 6999999999999999999887 7777765544 35555443 246889999999999
Q ss_pred CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce-eeEEEecCCC----CeEEEE----EcCCCCEEEE
Q 003208 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEG----SIFRIE----WSSCGSKLVS 273 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~----~V~~l~----~~~~~~~l~s 273 (839)
|.|++||+. ... ++..+..|.+ .|.+++ |+|++++|++
T Consensus 139 ~~i~vwd~~---------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 185 (357)
T 3i2n_A 139 GTVKVWDPR---------------------------------QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185 (357)
T ss_dssp SCEEEECTT---------------------------------SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred CeEEEEeCC---------------------------------CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence 999999998 333 5566655554 899998 7889999999
Q ss_pred EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEEEeCCCeEEEEcC-CCceEEEe----
Q 003208 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGKQLKMI---- 343 (839)
Q Consensus 274 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~~~dg~i~vw~~-~~~~~~~~---- 343 (839)
++.|+.|++||++.... .....|...|.+++|++ +++++++.||.|++||+ .++.+..+
T Consensus 186 ~~~d~~i~i~d~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 186 GYDNGDIKLFDLRNMAL-----------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS 254 (357)
T ss_dssp EETTSEEEEEETTTTEE-----------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred EccCCeEEEEECccCce-----------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence 99999999999988655 25577889999999974 79999999999999998 44443333
Q ss_pred -ecccCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCcCcc-CcCCCCcccccCCCcceEEeecCCCccceeeccCCCc
Q 003208 344 -KEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPG-SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (839)
Q Consensus 344 -~~h~~~~i~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (839)
..|.. .|.+++|+|++. +|++++.||.|++||++..... .......... .+.....+.....|..
T Consensus 255 ~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 255 EKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG-----------VAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp EECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-----------CCCEEEEEEEEECCSS
T ss_pred cCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc-----------cccccceeeccccCCC
Confidence 37877 799999999998 8999999999999999542111 1100000000 0000122334456778
Q ss_pred ceEEEEEecCCeEEE--EeccceEEEEEecC
Q 003208 421 YVRCLHLTSEDTLYI--ATNHGYLYHTKLCD 449 (839)
Q Consensus 421 ~v~~~~~~~~~~~~~--~~~~g~i~~~~~~~ 449 (839)
.|++++|+|++.+++ ++.+|.+..|++..
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 899999999986554 67789998887654
No 81
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2.4e-28 Score=263.12 Aligned_cols=303 Identities=13% Similarity=0.090 Sum_probs=227.2
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCC-cEEEEEeCCCcEEEEecCCCceEEEEec-CCceeEEEEeeccCCc-cceEEEE
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNL-EALRIAS 198 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~s~~~~~~~~-~~~~l~s 198 (839)
.+....+.+|.+.|++++|+| ++ .+||+|+.|+.|++||+.+++....+.. .....+.++.+ ++ ++.+|++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s 136 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKF---NQFNTNQLFV 136 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEE---ETTEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEe---CCCCCCEEEE
Confidence 566778899999999999999 88 8999999999999999998888777653 34445677776 46 6799999
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe---cCCCCeEEEEEcCCCCEEEEEe
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s 275 (839)
++.|+.|++||+. . ..+..+. +|...|.+++|+|++++|++++
T Consensus 137 ~~~d~~i~iwd~~---------------------------------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 137 SSIRGATTLRDFS---------------------------------G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTTEEEEEETT---------------------------------S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred EeCCCEEEEEECC---------------------------------C-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 9999999999987 2 2333343 4558899999999999999999
Q ss_pred CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEeCCCeEEEEcC-C----CceEEEeeccc
Q 003208 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-D----GKQLKMIKEHI 347 (839)
Q Consensus 276 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~-~----~~~~~~~~~h~ 347 (839)
.|+.|++||++.... ..+.+|...|.+++|+ +. ++++++.|+.|++||+ . +..+..+ .|.
T Consensus 183 ~d~~i~i~d~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~ 250 (383)
T 3ei3_B 183 STGRLLLLGLDGHEI-----------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE 250 (383)
T ss_dssp TTSEEEEEETTSCEE-----------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS
T ss_pred CCCCEEEEECCCCEE-----------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC
Confidence 999999999954322 3777899999999999 34 8999999999999999 4 4556656 577
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEE
Q 003208 348 GRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (839)
Q Consensus 348 ~~~i~~~~~~~-~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 425 (839)
. .|.+++|+| ++.+|++++.|+.|++||++. ..+..+.++..... .....+...-.....+..+
T Consensus 251 ~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 251 K-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF-------------QHLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp S-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC-------------TTSCCCCCEECSSSSEEEE
T ss_pred C-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc-------------ccccceEEeccCCCCceEE
Confidence 7 699999999 999999999999999999954 33344333321000 0000000000112346678
Q ss_pred EEecCCeEEEEeccceEEEEEecCCCCceeEEEeeec-CCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcC
Q 003208 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (839)
Q Consensus 426 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~ 503 (839)
+|+|++.+ +++.+|.+.+|++..... ...+..+ ....+.+++++++. .+|++|+ ||.|++|++++
T Consensus 317 ~~s~dg~~-s~s~d~~i~iwd~~~~~~---~~~l~~~~~~~~~~~~~~s~~g--------~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 317 GRYPDDQL-LLNDKRTIDIYDANSGGL---VHQLRDPNAAGIISLNKFSPTG--------DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBCCTTT-CTTCCCCEEEEETTTCCE---EEEECBTTBCSCCCEEEECTTS--------SEEEEEE-TTEEEEEECC-
T ss_pred EecCCccc-ccCCCCeEEEEecCCCce---eeeecCCCCCceEEEEEEecCc--------cEEEEec-CCcEEEEecCC
Confidence 88898888 777899998877654332 2333333 24556666776654 7899997 99999999854
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4.4e-29 Score=265.63 Aligned_cols=297 Identities=9% Similarity=0.057 Sum_probs=207.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEe---
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDR-------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG--- 325 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~--- 325 (839)
..+|++++|+|++++|++|+.|. .|++|++..................+.+|...|.++++.++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 46899999999999999998644 59999997654311111122222356788889999999988888765
Q ss_pred --------CCCeEEEEcC-CC-ceEEEee--------cccCCceEEEEEccCCCEEEEEe--CCCcEEEEecCCcCccCc
Q 003208 326 --------EDCTCRVWGS-DG-KQLKMIK--------EHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQAFLPGSL 385 (839)
Q Consensus 326 --------~dg~i~vw~~-~~-~~~~~~~--------~h~~~~i~~~~~~~~~~~l~t~~--~dg~i~iw~~~~~~~~~~ 385 (839)
.|+.+|+|++ .. ..+.... .+.. .+.+++|+|||+++++++ .|++|++||++...
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---- 168 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADD-YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---- 168 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTC-CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE----
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCccc-CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc----
Confidence 4678999987 32 2222211 1222 478999999999876554 68999999985421
Q ss_pred CCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCC
Q 003208 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGM 465 (839)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 465 (839)
.++.+ .+...|++++|+|++.+++++.++.+..+......... ......+..
T Consensus 169 -------------~~~~~-------------~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~--~~~~~~~~~ 220 (365)
T 4h5i_A 169 -------------EKFEI-------------ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA--RKTDFDKNW 220 (365)
T ss_dssp -------------EEEEE-------------ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE--EECCCCTTE
T ss_pred -------------EEEEe-------------CCCCceEEEEEccCCceEEeccceeEEEEEeccCccee--eeecCCCCC
Confidence 11111 13346999999999999988888888766544332211 122223456
Q ss_pred ceEEeeecCCCCCCCCCCCcEEEEeCCCc----cEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEe
Q 003208 466 PIICMDLLSNEPKYPCGIDDWVALGDGKG----NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (839)
Q Consensus 466 ~v~~~~~~~~~~~~~~~~~~~l~~g~~dg----~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 541 (839)
.+.++++.++. ..+++++.++ .+++|++........ .......+...+.. ++++|+|++|++|
T Consensus 221 ~v~~v~fspdg--------~~l~~~s~d~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~V~~--~~~Spdg~~lasg 287 (365)
T 4h5i_A 221 SLSKINFIADD--------TVLIAASLKKGKGIVLTKISIKSGNTSVL---RSKQVTNRFKGITS--MDVDMKGELAVLA 287 (365)
T ss_dssp EEEEEEEEETT--------EEEEEEEESSSCCEEEEEEEEETTEEEEE---EEEEEESSCSCEEE--EEECTTSCEEEEE
T ss_pred CEEEEEEcCCC--------CEEEEEecCCcceeEEeecccccceecce---eeeeecCCCCCeEe--EEECCCCCceEEE
Confidence 78888887764 7888888776 577888765432111 11111223333444 6799999999999
Q ss_pred CCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccc
Q 003208 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (839)
Q Consensus 542 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~ 612 (839)
+.|+.|+|||+.+.+ +...+..+|...|++++|||||++||+||.|++|+||+++..
T Consensus 288 s~D~~V~iwd~~~~~--------------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 288 SNDNSIALVKLKDLS--------------MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSCEEEEETTTTE--------------EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCCCEEEEEECCCCc--------------EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999998764 223445689999999999999999999999999999999754
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=6.9e-28 Score=258.42 Aligned_cols=323 Identities=12% Similarity=0.063 Sum_probs=231.2
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (839)
+..+|.+++|+ |+++ .+++++.++.|++|++.... .+.+..+.+|...|++++|+|
T Consensus 7 ~~~~i~~~~~s-------~~~~---~l~~~~~d~~v~i~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~- 62 (372)
T 1k8k_C 7 LVEPISCHAWN-------KDRT---QIAICPNNHEVHIYEKSGNK-------------WVQVHELKEHNGQVTGVDWAP- 62 (372)
T ss_dssp CSSCCCEEEEC-------TTSS---EEEEECSSSEEEEEEEETTE-------------EEEEEEEECCSSCEEEEEEET-
T ss_pred cCCCeEEEEEC-------CCCC---EEEEEeCCCEEEEEeCCCCc-------------EEeeeeecCCCCcccEEEEeC-
Confidence 44579999999 8873 44444479999999998632 447888899999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCceEEEEe-cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~ 222 (839)
++++|++++.|+.|++||+.+++...... ......+.++.+ ++++.+|++++.|+.|++||+....
T Consensus 63 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~v~i~d~~~~~-------- 129 (372)
T 1k8k_C 63 --DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW---APNEKKFAVGSGSRVISICYFEQEN-------- 129 (372)
T ss_dssp --TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE---CTTSSEEEEEETTSSEEEEEEETTT--------
T ss_pred --CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE---CCCCCEEEEEeCCCEEEEEEecCCC--------
Confidence 99999999999999999998887655543 223445667776 5789999999999999999998211
Q ss_pred CCccCCCCCCCceeeEeecccccce-eeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCC--------
Q 003208 223 EGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-------- 293 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------- 293 (839)
... ......+|...|.+++|+|++++|++++.|+.|++||++.......
T Consensus 130 ----------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 187 (372)
T 1k8k_C 130 ----------------------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 187 (372)
T ss_dssp ----------------------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBS
T ss_pred ----------------------cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccccc
Confidence 011 2223367899999999999999999999999999999753211000
Q ss_pred --CCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeC
Q 003208 294 --DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 294 --~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
...+.+ ..+.+|...|.+++|+ +.+|++++.|+.|++||+ .++.+..+..|.. +|.+++|+|++.++++| .
T Consensus 188 ~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~ 263 (372)
T 1k8k_C 188 KMPFGELM--FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-H 263 (372)
T ss_dssp CCCTTCEE--EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-T
T ss_pred ccchhhhe--EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-e
Confidence 001111 2566899999999998 579999999999999999 8899999999987 69999999999988877 9
Q ss_pred CCcEEEEecCC-----cCccCcCCCCcccccC-CCcceEEeecCCCccc------eeeccCCCcceEEEEEe-cCC----
Q 003208 369 DSAIKVHQFQA-----FLPGSLESHPEAKEFN-GRTEIFSIKIPNFSEQ------IRLTDSKSEYVRCLHLT-SED---- 431 (839)
Q Consensus 369 dg~i~iw~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~-~~~---- 431 (839)
|+.|++|+++. .....+..+....... .....|.......... .....+|...|+++++. +++
T Consensus 264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 99999999965 2222222211100000 0000000000000000 11224778899999966 553
Q ss_pred eEEEEeccceEEEEEecC
Q 003208 432 TLYIATNHGYLYHTKLCD 449 (839)
Q Consensus 432 ~~~~~~~~g~i~~~~~~~ 449 (839)
.++.++.+|.|..|++..
T Consensus 344 ~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEEEETTSEEEEEEHHH
T ss_pred eEEEecCCCceEEEEecC
Confidence 566667899998887654
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-28 Score=250.81 Aligned_cols=286 Identities=15% Similarity=0.190 Sum_probs=229.1
Q ss_pred ECCCC-eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec
Q 003208 50 DLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (839)
Q Consensus 50 d~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (839)
|..++ +.+.++..|.. .|.+++|. .+. .+++++.|+.|++||+.. .+....+
T Consensus 3 d~~~~~~~~~~l~~h~~-~v~~~~~~-------~~~----~l~s~~~dg~v~vw~~~~---------------~~~~~~~ 55 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQ-DVRDVVAV-------DDS----KVASVSRDGTVRLWSKDD---------------QWLGTVV 55 (313)
T ss_dssp --CCCCEEEEEECCCSS-CEEEEEEE-------ETT----EEEEEETTSEEEEEEESS---------------SEEEEEE
T ss_pred CccccHHHHHHhhCCCC-CcEEEEec-------CCC----EEEEEEcCCcEEEEECCC---------------CEEEEEe
Confidence 33444 66777887665 79999993 332 667777899999999964 4566777
Q ss_pred cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC---ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeE
Q 003208 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (839)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i 205 (839)
..|...|.+++|+| ++.+|++++.|+.|++|++... +.+..+..+.. .+.++.+ ++.++++++.||.|
T Consensus 56 ~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-----~~~~l~~~~~d~~i 126 (313)
T 3odt_A 56 YTGQGFLNSVCYDS---EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF-----QDGVVISGSWDKTA 126 (313)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE-----ETTEEEEEETTSEE
T ss_pred ecCCccEEEEEECC---CCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc-CEEEEEe-----cCCEEEEEeCCCCE
Confidence 88999999999999 9999999999999999998764 44555554443 3556654 46799999999999
Q ss_pred EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 003208 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd 284 (839)
++|| . ......+..|...|.++.|.| +++.+++++.|+.|++||
T Consensus 127 ~~~d-~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 127 KVWK-E----------------------------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EEEE-T----------------------------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEc-C----------------------------------CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 9999 2 355667889999999999988 899999999999999999
Q ss_pred cccCccCCCCCceeeeceEeec-cccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
...... .+.. |...|.+++|+ +..+++++.|+.|++||+ +++.+..+..|.. +|.+++|+|++
T Consensus 172 ~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~- 237 (313)
T 3odt_A 172 NDKVIK------------TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLLPNG- 237 (313)
T ss_dssp TTEEEE------------EECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTS-
T ss_pred cCceEE------------EEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEecCC-
Confidence 443221 4444 88999999998 556999999999999999 7899999999988 79999999999
Q ss_pred EEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccc
Q 003208 362 LLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 440 (839)
.|++++.||.|++||++.. .... ...+...|.+++|+|++.+++++.+|
T Consensus 238 ~l~~~~~dg~v~iwd~~~~~~~~~------------------------------~~~~~~~i~~~~~~~~~~~~~~~~dg 287 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKENGSLKQV------------------------------ITLPAISIWSVDCMSNGDIIVGSSDN 287 (313)
T ss_dssp CEEEEETTSEEEEECTTTCCEEEE------------------------------EECSSSCEEEEEECTTSCEEEEETTS
T ss_pred CEEEEecCCEEEEEECCCCceeEE------------------------------EeccCceEEEEEEccCCCEEEEeCCC
Confidence 5899999999999998542 1111 12234579999999999999999999
Q ss_pred eEEEEEecCC
Q 003208 441 YLYHTKLCDM 450 (839)
Q Consensus 441 ~i~~~~~~~~ 450 (839)
.+..|++...
T Consensus 288 ~i~iw~~~~~ 297 (313)
T 3odt_A 288 LVRIFSQEKS 297 (313)
T ss_dssp CEEEEESCGG
T ss_pred cEEEEeCCCC
Confidence 9988876543
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.4e-29 Score=262.37 Aligned_cols=249 Identities=17% Similarity=0.193 Sum_probs=193.6
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (839)
|...|.+++|+ |+|+ .+++++.|++|+|||+..+. ..++..+.+|.+.|++++|+|.
T Consensus 12 H~~~V~~v~~s-------~~g~---~lasgs~D~~v~lwd~~~~~-------------~~~~~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 12 HEDMIHDAQMD-------YYGT---RLATCSSDRSVKIFDVRNGG-------------QILIADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp --CCEEEEEEC-------GGGC---EEEEEETTTEEEEEEEETTE-------------EEEEEEEECCSSCEEEEEECCG
T ss_pred ccCeEEEeeEc-------CCCC---EEEEEeCCCeEEEEEecCCC-------------cEEEEEEcCCCccEEEEEeCCC
Confidence 44479999999 8874 55666679999999998532 3467788999999999999861
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCc--eEEEEecCCceeEEEEeeccCCcc--ceEEEEeecCCeEEEEEeeccccccCC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~--~~~l~sg~~dg~i~vw~~~~~~~~~~~ 219 (839)
.++++||+|+.|++|++||+++++ .+..+..+.. .+.++.+ +|+ +.+|++|+.|+.|++|++....
T Consensus 69 -~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~V~~v~~---~p~~~g~~lasgs~D~~i~lwd~~~~~----- 138 (316)
T 3bg1_A 69 -MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-SVNSVCW---APHDYGLILACGSSDGAISLLTYTGEG----- 138 (316)
T ss_dssp -GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-CCCEEEE---CCTTTCSCEEEECSSSCEEEEEECSSS-----
T ss_pred -CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-ceEEEEE---CCCCCCcEEEEEcCCCCEEEEecCCCC-----
Confidence 137899999999999999998764 4555554443 3556665 354 7899999999999999987110
Q ss_pred CCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC-----------------CCEEEEEeCCCcEEE
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----------------GSKLVSVSDDRSARI 282 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----------------~~~l~s~s~d~~i~i 282 (839)
.......+.+|...|.+++|+|+ +++|++++.|++|++
T Consensus 139 -------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 139 -------------------------QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp -------------------------CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred -------------------------CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence 01123345689999999999997 468999999999999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEECC------CEEEEEeCCCeEEEEcCCC----c-eEEEeecccCCce
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG----K-QLKMIKEHIGRGI 351 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vw~~~~----~-~~~~~~~h~~~~i 351 (839)
||++.... .+.. ..+.+|...|.+++|++ .+|++++.|++|++|++.. + ....+..|.. .|
T Consensus 194 Wd~~~~~~-----~~~~--~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v 265 (316)
T 3bg1_A 194 WKEEEDGQ-----WKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-VV 265 (316)
T ss_dssp EEECTTSC-----EEEE--ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-CE
T ss_pred EEeCCCCc-----ccee--eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-cE
Confidence 99975422 1222 26789999999999984 6899999999999999832 1 2234556776 69
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 352 ~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
++++|+|++++|++++.|+.|++|+..
T Consensus 266 ~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 266 WHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999999974
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.4e-29 Score=262.41 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=190.7
Q ss_pred ccccCCCceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe--eeeEEeeecCceEEeEEecccccccCCCc
Q 003208 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (839)
Q Consensus 8 ~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 84 (839)
+.......|.++|++++|+ |+ +++|++|+ |++|+|||+.+++ .+..+..|.. +|.+++|++. .++
T Consensus 4 ~~~~~~~~H~~~V~~v~~s--~~----g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~-----~~~ 71 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMD--YY----GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHP-----MYG 71 (316)
T ss_dssp ----------CCEEEEEEC--GG----GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCG-----GGS
T ss_pred eeeeecccccCeEEEeeEc--CC----CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCC-----CCC
Confidence 3333334589999999999 99 88999988 9999999998875 4567777655 7999999821 134
Q ss_pred cceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC--CcEEEEEeCCCcEEEE
Q 003208 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVW 162 (839)
Q Consensus 85 ~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~las~~~d~~i~vw 162 (839)
+ .+++++.|++|+|||+.... .+....+.+|...|++++|+| + +.+|++|+.|+.|++|
T Consensus 72 ~---~l~s~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~V~~v~~~p---~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 72 N---ILASCSYDRKVIIWREENGT-------------WEKSHEHAGHDSSVNSVCWAP---HDYGLILACGSSDGAISLL 132 (316)
T ss_dssp S---CEEEEETTSCEEEECCSSSC-------------CCEEEEECCCSSCCCEEEECC---TTTCSCEEEECSSSCEEEE
T ss_pred C---EEEEEECCCEEEEEECCCCc-------------ceEEEEccCCCCceEEEEECC---CCCCcEEEEEcCCCCEEEE
Confidence 2 66677779999999997533 356677889999999999999 6 7899999999999999
Q ss_pred ecCCCceEE---EEecCCceeEEEEeeccC--------------CccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 163 DISNSSIIL---EVHSPERCLLYSMKLWGD--------------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 163 d~~~~~~~~---~~~~~~~~~~~s~~~~~~--------------~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
|+....... .+..+. ..+.++.+... ...+.+|++|+.|+.|++||+....
T Consensus 133 d~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----------- 200 (316)
T 3bg1_A 133 TYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG----------- 200 (316)
T ss_dssp EECSSSCEEECCBTTSSS-SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-----------
T ss_pred ecCCCCCcceeeeecccc-CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-----------
Confidence 998753321 112222 22333333211 0114689999999999999986100
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcccCccCCCCCceeeec
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 301 (839)
..+++..+.+|.+.|.+++|+|++ .+|++++.|++|++|++..... .....
T Consensus 201 -------------------~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~-----~~~~~- 255 (316)
T 3bg1_A 201 -------------------QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS-----NTWSP- 255 (316)
T ss_dssp -------------------CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC-----CCCBC-
T ss_pred -------------------ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc-----cchhh-
Confidence 124566788999999999999986 7899999999999999976321 00000
Q ss_pred eEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC
Q 003208 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 302 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 335 (839)
..+..|...|++++|+ +.+|++++.|++|++|+.
T Consensus 256 ~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 256 KLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp CEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred hhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 1456788999999999 589999999999999996
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-27 Score=253.75 Aligned_cols=297 Identities=12% Similarity=0.161 Sum_probs=233.7
Q ss_pred eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce
Q 003208 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (839)
Q Consensus 56 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (839)
....+..|.. .|.+++|+ |+++ .+++++.|+.|++||+.. .+.+..+.+|...|
T Consensus 24 ~~~~l~~h~~-~v~~~~~s-------~~~~---~l~~~~~dg~i~vwd~~~---------------~~~~~~~~~h~~~v 77 (369)
T 3zwl_B 24 KAIKLTGHER-PLTQVKYN-------KEGD---LLFSCSKDSSASVWYSLN---------------GERLGTLDGHTGTI 77 (369)
T ss_dssp EEEEEECCSS-CEEEEEEC-------TTSC---EEEEEESSSCEEEEETTT---------------CCEEEEECCCSSCE
T ss_pred ccEEEEEeec-eEEEEEEc-------CCCC---EEEEEeCCCEEEEEeCCC---------------chhhhhhhhcCCcE
Confidence 3445666555 79999999 8873 555556799999999875 56778889999999
Q ss_pred EEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC-----CeEEEEEe
Q 003208 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKV 210 (839)
Q Consensus 136 ~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d-----g~i~vw~~ 210 (839)
.+++|+| ++++|++++.|+.|++||+.+++.+..+... ..+.++.+ ++++.++++++.+ +.|++|++
T Consensus 78 ~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~---~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 78 WSIDVDC---FTKYCVTGSADYSIKLWDVSNGQCVATWKSP--VPVKRVEF---SPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp EEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECS--SCEEEEEE---CTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCeEEEEE---ccCCCEEEEecCCccCCCCEEEEEEe
Confidence 9999999 9999999999999999999999998887733 33556666 6889999999998 99999999
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
......... . . ........+..|.+ .+.+++|+|++++|++++.|+.|++||+.+.
T Consensus 150 ~~~~~~~~~------------------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 150 ERDSATHEL------------------T---K-VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EECTTTCCE------------------E---E-ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred cCCccceee------------------c---c-cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 843321100 0 0 02234556677777 9999999999999999999999999999873
Q ss_pred -ccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEE
Q 003208 289 -YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (839)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~ 364 (839)
.. . ..+..|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+. +.. ++.+++|+|++++++
T Consensus 208 ~~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 208 YEY-----V-----DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC-PLNTAVITPLKEFII 275 (369)
T ss_dssp TEE-----E-----EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CEEEEEECSSSSEEE
T ss_pred cEe-----E-----EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC-CceeEEecCCCceEE
Confidence 32 1 3677899999999998 689999999999999999 777777777 444 699999999999999
Q ss_pred EEeCCC--------------cEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecC
Q 003208 365 TAGFDS--------------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (839)
Q Consensus 365 t~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 430 (839)
+++.++ .+++||.... ........+...|++++|+|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIFE-----------------------------EEIGRVQGHFGPLNTVAISPQ 326 (369)
T ss_dssp EEECCC-------------CEEEEEETTTC-----------------------------CEEEEEECCSSCEEEEEECTT
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCCC-----------------------------cchhheecccCcEEEEEECCC
Confidence 999998 6777776331 112223345578999999999
Q ss_pred CeEE-EEeccceEEEEEecC
Q 003208 431 DTLY-IATNHGYLYHTKLCD 449 (839)
Q Consensus 431 ~~~~-~~~~~g~i~~~~~~~ 449 (839)
+.++ +++.+|.+..|++..
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SSEEEEEETTSEEEEEEECH
T ss_pred CCEEEEEcCCCeEEEEECcc
Confidence 8655 456789998887644
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.9e-29 Score=272.92 Aligned_cols=294 Identities=13% Similarity=0.148 Sum_probs=212.8
Q ss_pred eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceE
Q 003208 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (839)
Q Consensus 57 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 136 (839)
......|.. +|++|+|+ |... ..+++++.||.|+|||+.... ......+.+|.+.|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~-------P~~~--~~lasGs~dg~i~lWd~~~~~-------------~~~~~~~~gH~~~V~ 168 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWH-------PTHP--STVAVGSKGGDIMLWNFGIKD-------------KPTFIKGIGAGGSIT 168 (435)
T ss_dssp CCEEEECSS-CEEEEEEC-------SSCT--TCEEEEETTSCEEEECSSCCS-------------CCEEECCCSSSCCCC
T ss_pred cccCCCCCC-CEEEEEEe-------CCCC--CEEEEEeCCCEEEEEECCCCC-------------ceeEEEccCCCCCEE
Confidence 344444444 79999999 5321 034445569999999998654 445667789999999
Q ss_pred EEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 137 ~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
+++|+| .++.+|++|+.|++|++||+++.........+. ...+.++.+ ++++.+|++|+.||.|++||++
T Consensus 169 ~l~f~p--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~dg~i~~wd~~---- 239 (435)
T 4e54_B 169 GLKFNP--LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV---SASSRMVVTGDNVGNVILLNMD---- 239 (435)
T ss_dssp EEEECS--SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE---ETTTTEEEEECSSSBEEEEESS----
T ss_pred EEEEeC--CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE---CCCCCEEEEEeCCCcEeeeccC----
Confidence 999998 257899999999999999997654433322221 222334444 5889999999999999999986
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCCCC
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSD 294 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~ 294 (839)
.+.+..+.+|...|.+++|+|+++ +|++++.|++|++||++....
T Consensus 240 ------------------------------~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---- 285 (435)
T 4e54_B 240 ------------------------------GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---- 285 (435)
T ss_dssp ------------------------------SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS----
T ss_pred ------------------------------cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc----
Confidence 334556789999999999999876 688999999999999987654
Q ss_pred CceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCC-----ceEEEEEccCCCEEEEE
Q 003208 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLSSLLVTA 366 (839)
Q Consensus 295 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~-----~i~~~~~~~~~~~l~t~ 366 (839)
...+ ....+|...|.+++|+ +.+|++++.|+.|++||+ +++....+..|... .+....|+|++..++++
T Consensus 286 -~~~~--~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 286 -KASF--LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp -SSCC--SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred -cceE--EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 1111 2456899999999998 689999999999999999 67777666655421 13345677777766665
Q ss_pred eC------------CCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEE-EEecCCe
Q 003208 367 GF------------DSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL-HLTSEDT 432 (839)
Q Consensus 367 ~~------------dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ 432 (839)
+. ++.|++||... ..+.. ....+...|.++ +|+|++.
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~-----------------------------l~~~~~~~v~s~~~fspdg~ 413 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ-----------------------------LYDPESSGISSLNEFNPMGD 413 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEE-----------------------------ECCSSCCCCCCEEEECTTSS
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEE-----------------------------EeCCCCCcEEEEEEECCCCC
Confidence 42 35688888743 21111 112334456776 6999999
Q ss_pred EEEEeccceEEEEEec
Q 003208 433 LYIATNHGYLYHTKLC 448 (839)
Q Consensus 433 ~~~~~~~g~i~~~~~~ 448 (839)
+++++.++.|.+|++.
T Consensus 414 ~lasg~d~~i~iW~~~ 429 (435)
T 4e54_B 414 TLASAMGYHILIWSQQ 429 (435)
T ss_dssp CEEEECSSEEEECCCC
T ss_pred EEEEEcCCcEEEEECC
Confidence 9998888888655443
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.5e-30 Score=272.09 Aligned_cols=273 Identities=10% Similarity=0.018 Sum_probs=207.6
Q ss_pred CCceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 13 VGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 13 ~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
..+....|.+|+|+ || |+++++++ |++|+ |.+.++ .+.+|.. .|.+++|+ |+|
T Consensus 11 ~~~~~~~v~sv~~S--pD----G~~iASas~D~TV~--d~~~~~---~l~gh~~-~v~~V~Fs-------Pdg------- 64 (588)
T 2j04_A 11 RKEFEDWKNNLTWA--RD----GTLYLTTFPDISIG--QPKYAK---DINCNSK-NLFHVKEF-------PLE------- 64 (588)
T ss_dssp SCCCSSSSCCEEEC--TT----SCEEEECSSSEEEE--EECCCS---CCSSBGG-GTEEEEEE-------CCC-------
T ss_pred HhHhhccEEEEEEC--CC----CCEEEEEcCCceee--cccccc---eecCCCc-cEEEEEEC-------CCC-------
Confidence 34567789999999 99 89999988 89999 755554 4456555 69999999 874
Q ss_pred EEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 92 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
.++.+.+|+.+. .....+ .|.+.|.+++|+| +|.+||+++.||.|++||... ++.
T Consensus 65 ---~~~~~~~~~~~~----------------~~~~~~-~~~~~V~~vawSP---dG~~LAs~s~dg~V~iwd~~~--~l~ 119 (588)
T 2j04_A 65 ---FENKLDFELAQQ----------------NGLLNS-QPVCYPRVCKPSP---IDDWMAVLSNNGNVSVFKDNK--MLT 119 (588)
T ss_dssp ---CCCTTTTSCCCS----------------SCSSTT-SCSCCEEEEEECS---SSSCEEEEETTSCEEEEETTE--EEE
T ss_pred ---CcceEEEEeCCC----------------ceEeec-CCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCc--eee
Confidence 244444444331 112222 4588999999999 999999999999999999654 555
Q ss_pred EEecCCc----eeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 172 EVHSPER----CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 172 ~~~~~~~----~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
.+. +.. ..+.+++| +|++.+||+|+.||+|++||+..+..... ..-
T Consensus 120 ~l~-~~~~~~~~sv~svaf---SPDG~~LAsgs~DGtVkIWd~~~~~l~~~--------------------------~~i 169 (588)
T 2j04_A 120 NLD-SKGNLSSRTYHCFEW---NPIESSIVVGNEDGELQFFSIRKNSENTP--------------------------EFY 169 (588)
T ss_dssp ECC-CSSCSTTTCEEEEEE---CSSSSCEEEEETTSEEEEEECCCCTTTCC--------------------------CCE
T ss_pred ecc-CCCccccccEEEEEE---cCCCCEEEEEcCCCEEEEEECCCCccccc--------------------------cce
Confidence 544 332 13556766 79999999999999999999982110000 001
Q ss_pred eeEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe-eccccceEEeEECCCEEE
Q 003208 248 NLFRL----VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTDSFII 322 (839)
Q Consensus 248 ~~~~~----~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~l~ 322 (839)
.+..+ .+|.+.|.+++|+|+| +++++.|++|++||+.+... .... ..+ .+|...|.+++|++..++
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----~~~~--~tL~~~h~~~V~svaFsg~~LA 240 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----QPVS--RMIQNASRRKITDLKIVDYKVV 240 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----CCCE--EEEECCCSSCCCCEEEETTEEE
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----ccce--eeecccccCcEEEEEEECCEEE
Confidence 34555 6788999999999999 88999999999999988653 1111 134 478899999999988999
Q ss_pred EEeCCCeEEEEcCCCceEEEee-cccCCceEEEEE--ccCCCEEEEEeCCCcEEEEecC
Q 003208 323 TAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 323 s~~~dg~i~vw~~~~~~~~~~~-~h~~~~i~~~~~--~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
+++ +++|++||+.+.....+. +|.. .|+.++| +|++..+++++.||+ ++|..+
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 997 799999999655553333 7887 6999999 999999999999999 999985
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-27 Score=260.30 Aligned_cols=280 Identities=16% Similarity=0.254 Sum_probs=224.3
Q ss_pred EEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (839)
...|+|+ ++ .+|+++-|++|+|||..++. ...+..+.+|.+.|++++|+| ++
T Consensus 108 ~~~l~wS-------~~-----n~lAvgld~tV~lWd~~tg~-------------~~~~~~~~~~~~~V~sv~fsp---dg 159 (420)
T 4gga_A 108 LNLVDWS-------SG-----NVLAVALDNSVYLWSASSGD-------------ILQLLQMEQPGEYISSVAWIK---EG 159 (420)
T ss_dssp CBCEEEC-------TT-----SEEEEEETTEEEEEETTTCC-------------EEEEEECCSTTCCEEEEEECT---TS
T ss_pred ceeEEEC-------CC-----CEEEEEeCCEEEEEECCCCC-------------EEEEEEecCCCCcEEEEEECC---CC
Confidence 4557777 55 57888889999999998643 334445678889999999999 99
Q ss_pred cEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 148 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
++||+|+.|+.|++||+.+++.+..+..+... +.++. .++.++++|+.|+.+++|+...
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~-v~~~s-----~~~~~l~sgs~d~~i~~~d~~~--------------- 218 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGSLS-----WNSYILSSGSRSGHIHHHDVRV--------------- 218 (420)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEE-----EETTEEEEEETTSEEEEEETTS---------------
T ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-eEEEe-----eCCCEEEEEeCCCceeEeeecc---------------
Confidence 99999999999999999999999988876643 33443 4678999999999999999871
Q ss_pred CCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (839)
....+..+.+|...+..+.++|+++++++++.|+.+++|+....... ...+ .....|
T Consensus 219 -----------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----~~~~--~~~~~~ 275 (420)
T 4gga_A 219 -----------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----WVPL--QTFTQH 275 (420)
T ss_dssp -----------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----SCCS--EEECCC
T ss_pred -----------------cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc----ceee--eeeccc
Confidence 34556778999999999999999999999999999999999876541 1111 267789
Q ss_pred ccceEEeEEC---CCEEEEE--eCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEe--CCCcEEEEecCC
Q 003208 308 NARVWDCCLT---DSFIITA--GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQA 379 (839)
Q Consensus 308 ~~~v~~~~~~---~~~l~s~--~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~--~dg~i~iw~~~~ 379 (839)
...|.+++|+ +..++++ +.|++|++||+ +++++..+..+. .+.++.|++++..+++++ .|+.|++||+..
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 9999999998 3566654 57999999999 788888887665 489999999999888765 699999999854
Q ss_pred -cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEecCCC
Q 003208 380 -FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMD 451 (839)
Q Consensus 380 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~ 451 (839)
..+.+ +.+|.+.|++++|+|++. ++.++.|+.|.+|++++..
T Consensus 354 ~~~v~~------------------------------l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 354 MAKVAE------------------------------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp CCEEEE------------------------------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred CcEEEE------------------------------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 32322 335567899999999985 4556678999988887643
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.2e-28 Score=267.28 Aligned_cols=297 Identities=14% Similarity=0.201 Sum_probs=212.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe-----------eeeEEeeec-----------CceEEeEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----------LIRPFQVFH-----------GIRLHGIS 72 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~-----------~~~~~~~~~-----------~~~v~~i~ 72 (839)
+.++|++|+|+ |+ +.+|++|. |+.|+|||+.+++ .+..++.|. ..+|.+++
T Consensus 27 ~~~~V~~v~~s--~~----g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 27 EADIISTVEFN--HS----GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp GGGSEEEEEEC--SS----SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred ccCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 56899999999 99 88999988 8999999999877 467777664 14699999
Q ss_pred ecccccccCCCc--cceeeEEEEEcCcEEEEEEeeccCCCCCCCCCcc------------c------------cceeeeE
Q 003208 73 CNFINCTEGSVS--TRVTFEVALFGEKRVKLFELNFELSPNSQYQPET------------C------------VNLSLVQ 126 (839)
Q Consensus 73 ~~~~~~~~~~~~--~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~------------~------------~~~~~~~ 126 (839)
|+ |++ . .+++++.|+.|++|++.........+.... . .......
T Consensus 101 ~~-------~~~~~~---~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 101 WL-------PQKNAA---QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp EC-------CCCSSS---EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred Ec-------CCCCcc---eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 99 664 2 677778899999999975321000000000 0 0001112
Q ss_pred e-ccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC-CceEEEE------ecCCceeEEEEeeccCCccc-eEEE
Q 003208 127 S-LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEV------HSPERCLLYSMKLWGDNLEA-LRIA 197 (839)
Q Consensus 127 ~-~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~-~~~~~~~------~~~~~~~~~s~~~~~~~~~~-~~l~ 197 (839)
. +.+|...|++++|+| ++++|++| .|+.|++||+.+ .+.+..+ .......+.++.+ +|++ .+|+
T Consensus 171 ~~~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~l~ 243 (447)
T 3dw8_B 171 IFANAHTYHINSISINS---DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF---HPNSCNTFV 243 (447)
T ss_dssp EECSCCSSCCCEEEECT---TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE---CSSCTTEEE
T ss_pred EeccCCCcceEEEEEcC---CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE---CCCCCcEEE
Confidence 2 478999999999999 99999998 799999999984 4444432 1122344677776 5777 8999
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC------------CeEEEEEc
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG------------SIFRIEWS 265 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~~ 265 (839)
+|+.||.|++||++.++.. ...+..+.+|.. .|.+++|+
T Consensus 244 s~~~dg~i~iwd~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALC-----------------------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFS 294 (447)
T ss_dssp EEETTSCEEEEETTTCSSS-----------------------------CTTCEEECCC-----CCHHHHHTTCEEEEEEC
T ss_pred EEeCCCeEEEEECcCCccc-----------------------------cceeeEeccCCCccccccccccCceEEEEEEC
Confidence 9999999999999822110 011455666665 99999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccc-CccCCCCCceeeeceEeeccccc---------------eEEeEEC--CCEEEEEeCC
Q 003208 266 SCGSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNAR---------------VWDCCLT--DSFIITAGED 327 (839)
Q Consensus 266 ~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~--~~~l~s~~~d 327 (839)
|++++|++++. +.|++||++. ... .. .+.+|... +..++|+ +.+|++++.|
T Consensus 295 ~~g~~l~~~~~-~~v~iwd~~~~~~~-----~~-----~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d 363 (447)
T 3dw8_B 295 HSGRYMMTRDY-LSVKVWDLNMENRP-----VE-----TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN 363 (447)
T ss_dssp TTSSEEEEEES-SEEEEEETTCCSSC-----SC-----CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST
T ss_pred CCCCEEEEeeC-CeEEEEeCCCCccc-----cc-----eeeccccccccccccccccccccceEEEECCCCCEEEEeccC
Confidence 99999999999 9999999986 443 22 45555432 2347888 5799999999
Q ss_pred CeEEEEcC-CCceEEEeeccc--------------------------------CCceEEEEEccCCCEEEEEeCCCcEEE
Q 003208 328 CTCRVWGS-DGKQLKMIKEHI--------------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~--------------------------------~~~i~~~~~~~~~~~l~t~~~dg~i~i 374 (839)
|.|++||+ +++.+ .+..+. ...|..++|+|++.+|++++.++ +.+
T Consensus 364 g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~ 441 (447)
T 3dw8_B 364 NFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYI 441 (447)
T ss_dssp TEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEE
T ss_pred CEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eee
Confidence 99999999 55443 332221 12588999999999999998875 777
Q ss_pred Eec
Q 003208 375 HQF 377 (839)
Q Consensus 375 w~~ 377 (839)
|..
T Consensus 442 ~~~ 444 (447)
T 3dw8_B 442 FQD 444 (447)
T ss_dssp EEC
T ss_pred ecc
Confidence 764
No 92
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.5e-28 Score=259.07 Aligned_cols=296 Identities=14% Similarity=0.126 Sum_probs=209.1
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCC----eeeeEEeeecCceEEeEEecccccccCC--Ccccee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGS--VSTRVT 88 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~~~--~~~~~~ 88 (839)
|.++|++++|+ |+ +++|++|+ |+.|+|||+.++ +.+..+..+.. .|.+++|+ | +++
T Consensus 10 H~~~v~~~~~~--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~d~~--- 72 (351)
T 3f3f_A 10 HDDLVHDVVYD--FY----GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDWA-------SPEYGR--- 72 (351)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEEC-------CGGGCS---
T ss_pred cccceeEEEEc--CC----CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEEc-------CCCCCC---
Confidence 88999999999 98 78888888 899999999876 45566666554 79999999 5 453
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC--CcEEEEEeCCCcEEEEecCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~las~~~d~~i~vwd~~~ 166 (839)
.+++++.|+.|++||+........ ....+.+..+.+|...|.+++|+| + +.+|++++.|+.|++||+.+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECS------GRRWNKLCTLNDSKGSLYSVKFAP---AHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTS------SCSEEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEecCCCccccc------ccCcceeeeecccCCceeEEEEcC---CCCCcEEEEecCCCcEEEecCCC
Confidence 566667799999999986431100 011366788889999999999999 8 99999999999999999988
Q ss_pred CceEEEEe------------cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 167 SSIILEVH------------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 167 ~~~~~~~~------------~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
++.+..+. ......+.++.+.....++.++++++.++.+.+|+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--------------------- 202 (351)
T 3f3f_A 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--------------------- 202 (351)
T ss_dssp TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS---------------------
T ss_pred hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC---------------------
Confidence 76543221 122334556666322224889999999999977776510
Q ss_pred eeeEeecccccceeeEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (839)
....+..+.+|...|.+++|+|++ ++|++++.|+.|++||++..... . ....+...
T Consensus 203 ----------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~-----~~~~~~~~ 262 (351)
T 3f3f_A 203 ----------KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP-----L-----ASEESLTN 262 (351)
T ss_dssp ----------CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred ----------ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc-----c-----ccCCcccc
Confidence 223466788999999999999998 79999999999999999876441 1 11111111
Q ss_pred eEEeEEC------CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 311 VWDCCLT------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 311 v~~~~~~------~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+...... ......+.....+.+|+. ..+.+..+.+|.. .|++++|+|++++|++++.||.|++|+++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 1111111 122233344555666766 6678888899988 699999999999999999999999999954
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1e-28 Score=265.36 Aligned_cols=313 Identities=13% Similarity=0.059 Sum_probs=216.7
Q ss_pred CceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeec
Q 003208 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (839)
Q Consensus 65 ~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (839)
..+|.+++|+ |++ .+|++ +.|+.|+||++.... .+.+..+.+|.+.|++++|+|
T Consensus 11 ~~~v~~~~~s-------~~g----~~l~~~~~d~~i~iw~~~~~~-------------~~~~~~~~~h~~~v~~~~~s~- 65 (377)
T 3dwl_C 11 PKPSYEHAFN-------SQR----TEFVTTTATNQVELYEQDGNG-------------WKHARTFSDHDKIVTCVDWAP- 65 (377)
T ss_dssp SSCCSCCEEC-------SSS----SEEECCCSSSCBCEEEEETTE-------------EEECCCBCCCSSCEEEEEECT-
T ss_pred CCcEEEEEEC-------CCC----CEEEEecCCCEEEEEEccCCc-------------eEEEEEEecCCceEEEEEEeC-
Confidence 3479999999 888 45555 469999999998632 367788899999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCc---eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCC
Q 003208 144 CNGNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (839)
Q Consensus 144 ~~~~~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~ 220 (839)
++++|++++.|+.|++||+.+++ ....+..+. ..+.++.+ ++++.+|++|+.|+.|++||+.
T Consensus 66 --~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~--------- 130 (377)
T 3dwl_C 66 --KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-RAATFVRW---SPNEDKFAVGSGARVISVCYFE--------- 130 (377)
T ss_dssp --TTCCEEEEETTSSEEEC------CCCCEEECCCCS-SCEEEEEC---CTTSSCCEEEESSSCEEECCC----------
T ss_pred --CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC-CceEEEEE---CCCCCEEEEEecCCeEEEEEEC---------
Confidence 99999999999999999998876 445544443 34667776 6789999999999999999998
Q ss_pred CCCCccCCCCCCCceeeEeecccccce---eeEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCC--
Q 003208 221 SPEGNHAHGSSSDFKCFKLQDQQHTAV---NLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-- 294 (839)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-- 294 (839)
... ....+.+ |...|.+++|+|++++|++++.|+.|++||+.........
T Consensus 131 ------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 131 ------------------------QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp ----------------------------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred ------------------------CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 333 4566777 9999999999999999999999999999999643321000
Q ss_pred -------C-ceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCce----EEEeecccCCceEEEEEccC
Q 003208 295 -------S-IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQ----LKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 295 -------~-~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~----~~~~~~h~~~~i~~~~~~~~ 359 (839)
. .+.+ ..+ +|...|.+++|+ +++|++++.|+.|++||+ .++. +..+..|.. +|.+++|+|+
T Consensus 187 ~~~~~~~~~~~~~--~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~ 262 (377)
T 3dwl_C 187 SVWGSRLPFNTVC--AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANE 262 (377)
T ss_dssp CSSCSCCCEEEEE--ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEET
T ss_pred cccccccchhhhh--hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCC
Confidence 0 1111 133 899999999998 579999999999999999 6665 778888888 6999999999
Q ss_pred CCEEEEEeCCCcEEEEecCC---cCccCcCCCCcccc------------------cCCCcceEEeecC--CCccceeecc
Q 003208 360 SSLLVTAGFDSAIKVHQFQA---FLPGSLESHPEAKE------------------FNGRTEIFSIKIP--NFSEQIRLTD 416 (839)
Q Consensus 360 ~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~~~ 416 (839)
+++|++|+.|+.+ +|+... .....+........ +......|..... ..........
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 341 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence 9999988866655 666532 11222221111000 0000011110000 0001112233
Q ss_pred CCCcceEEEEEecCC-----eEEEEeccceEEEEE
Q 003208 417 SKSEYVRCLHLTSED-----TLYIATNHGYLYHTK 446 (839)
Q Consensus 417 ~~~~~v~~~~~~~~~-----~~~~~~~~g~i~~~~ 446 (839)
.|...|+++++.+++ .++.++.||.|.+|+
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 578889999977643 477788899997765
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=9.5e-28 Score=256.78 Aligned_cols=280 Identities=17% Similarity=0.238 Sum_probs=217.4
Q ss_pred eeeeeeEEEEecCCCCCCC--cceEEEee-CCeeEEEECCC-Ceee-eEEeeecCceEEeEEecccccccCCCccceeeE
Q 003208 16 YLGEISALCFVHLPSHLSS--LPFLLAGS-GSQVLLYDLEA-GTLI-RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~--~~~l~~g~-~~~v~iwd~~~-~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 90 (839)
|.++|+||+|+ |+ . +.+|++|. |+.|+|||+.+ ++.+ ..+..|.. .|.+++|+ |+++ .+
T Consensus 38 h~~~v~~~~~~--~~---~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l 101 (368)
T 3mmy_A 38 PDDSIGCLSFS--PP---TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWS-------DDGS---KV 101 (368)
T ss_dssp CSSCEEEEEEC--CT---TSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEEC-------TTSS---EE
T ss_pred CCCceEEEEEc--CC---CCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEEC-------cCCC---EE
Confidence 88999999999 87 2 37888877 89999999997 5555 55665544 79999999 8874 56
Q ss_pred EEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE--eeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 91 l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~--~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
++++.|+.|++||+... +.+ .+.+|...|++++| +| ++.+|++++.|+.|++||+.+++
T Consensus 102 ~s~~~dg~v~iwd~~~~---------------~~~-~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSN---------------QAI-QIAQHDAPVKTIHWIKAP---NYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEETTSEEEEEETTTT---------------EEE-EEEECSSCEEEEEEEECS---SCEEEEEEETTSEEEEECSSCSS
T ss_pred EEEcCCCcEEEEEcCCC---------------Cce-eeccccCceEEEEEEeCC---CCCEEEEccCCCcEEEEECCCCc
Confidence 66677999999999752 222 35579999999999 77 88999999999999999999999
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
.+..+..+.... ++.+ ....+++++.++.+++|++... ...
T Consensus 163 ~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~i~~~~~~~~--------------------------------~~~ 203 (368)
T 3mmy_A 163 PMMVLQLPERCY--CADV-----IYPMAVVATAERGLIVYQLENQ--------------------------------PSE 203 (368)
T ss_dssp CSEEEECSSCEE--EEEE-----ETTEEEEEEGGGCEEEEECSSS--------------------------------CEE
T ss_pred EEEEEecCCCce--EEEe-----cCCeeEEEeCCCcEEEEEeccc--------------------------------cch
Confidence 888887766433 3332 2457888999999999999711 111
Q ss_pred eEEE-ecCCCCeEEEEEcCCCCE----EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc------------ce
Q 003208 249 LFRL-VGHEGSIFRIEWSSCGSK----LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------RV 311 (839)
Q Consensus 249 ~~~~-~~h~~~V~~l~~~~~~~~----l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------~v 311 (839)
.... ..+...+.++.+.++... +++++.|+.|++||++.... .... ..+.+|.. .|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~v 276 (368)
T 3mmy_A 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-----AKDN--FTFKCHRSNGTNTSAPQDIYAV 276 (368)
T ss_dssp EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-----HHHS--EEEECSEEC----CCCEEECCE
T ss_pred hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-----cccc--eeeeeeecccccccccccccce
Confidence 1111 234455566666554443 99999999999999987632 1111 25555655 79
Q ss_pred EEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 312 ~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.+++|+ +.+|++++.||.|++||+ +++++..+..|.. +|.+++|+|++++|++++.|+..+.|++
T Consensus 277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 277 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCCCeEEEEecccccccccc
Confidence 999998 579999999999999999 7889999999988 7999999999999999999986666654
No 95
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=7e-27 Score=244.52 Aligned_cols=279 Identities=14% Similarity=0.188 Sum_probs=217.0
Q ss_pred EEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (839)
.+.|+|| ++ .+|+++.|++|+|||+.++. ......+.+|...|++++|+| ++
T Consensus 28 ~~~l~WS-------~~-----~~lAvg~D~tV~iWd~~tg~-------------~~~~~~~~~~~~~V~~v~~~~---~~ 79 (318)
T 4ggc_A 28 LNLVDWS-------SG-----NVLAVALDNSVYLWSASSGD-------------ILQLLQMEQPGEYISSVAWIK---EG 79 (318)
T ss_dssp CBCEEEC-------TT-----SEEEEEETTEEEEEETTTCC-------------EEEEEECCSTTCCEEEEEECT---TS
T ss_pred ceEEEEC-------CC-----CEEEEEeCCEEEEEECCCCC-------------EEEEEEecCCCCeEEEEEECC---CC
Confidence 4678898 76 57788889999999998643 333345568889999999999 99
Q ss_pred cEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccC
Q 003208 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 148 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
++||+|+.|++|++||+++++.+..+..+.... .++ +.++..+++|+.++.+++|+...
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~-~~~-----~~~~~~l~s~~~~~~~~~~~~~~--------------- 138 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-GSL-----SWNSYILSSGSRSGHIHHHDVRV--------------- 138 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEE-----EEETTEEEEEETTSEEEEEETTS---------------
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceE-EEe-----ecCCCEEEEEecCCceEeeecCC---------------
Confidence 999999999999999999999999888776432 232 34678999999999999999761
Q ss_pred CCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecc
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (839)
....+..+.+|...+..+.+++++++|++++.|+.|++||+++++.. .... .....|
T Consensus 139 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~-~~~~~~ 195 (318)
T 4ggc_A 139 -----------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-----WVPL-QTFTQH 195 (318)
T ss_dssp -----------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB-----SCCS-EEECCC
T ss_pred -----------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc-----ccce-eeeccc
Confidence 34566778899999999999999999999999999999999876541 1111 256678
Q ss_pred ccceEEeEEC---CCE--EEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEe--CCCcEEEEecCC-
Q 003208 308 NARVWDCCLT---DSF--IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQA- 379 (839)
Q Consensus 308 ~~~v~~~~~~---~~~--l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~--~dg~i~iw~~~~- 379 (839)
...|.++.+. +.. +++++.+++|++|+...........+.. .+..+.++|++..+++++ .|+.|++||++.
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee-eeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 8889999987 233 3567788999999994333333344555 599999999998877665 799999999854
Q ss_pred cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEE-EEeccceEEEEEecC
Q 003208 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCD 449 (839)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~g~i~~~~~~~ 449 (839)
+.+.+ +.+|.+.|++++|+|++.++ .++.+|.|.+|++.+
T Consensus 275 ~~~~~------------------------------l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 AKVAE------------------------------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEE------------------------------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred cEEEE------------------------------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 33332 33455789999999998554 566789998877654
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=7.8e-28 Score=261.55 Aligned_cols=357 Identities=17% Similarity=0.183 Sum_probs=232.9
Q ss_pred eCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCC-CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCcccc
Q 003208 42 SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCV 120 (839)
Q Consensus 42 ~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 120 (839)
.+..+++|+.+.++....+..|.+ +|.+++|+ | +++ .+++++.|+.|++|++.........
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~------- 82 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGG-GINTLDIE-------PVEGR---YMLSGGSDGVIVLYDLENSSRQSYY------- 82 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSS-CEEEEEEC-------TTTCC---EEEEEETTSCEEEEECCCCSSSSCE-------
T ss_pred ccCcceeeccccCcceeeeeccCC-cEEEEEEe-------cCCCC---EEEEEcCCCeEEEEECCCCcccceE-------
Confidence 356688898888777777776555 79999999 7 763 5556667999999999864411100
Q ss_pred ceee-----eEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceE
Q 003208 121 NLSL-----VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (839)
Q Consensus 121 ~~~~-----~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 195 (839)
.... .....+|...|.+++|+| .++.+|++++.|+.|++||+.+++.+..+.... .+.++.+...++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYP--HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE--TVYSHHMSPVSTKHCL 158 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECT--TCTTCEEEEETTSEEEEEETTTTEEEEEEECSS--CEEEEEECSSCSSCCE
T ss_pred eccccccccccccccCCCcEEEEEEcc--CCCcEEEEEeCCCeEEEeeCCCCccceeccCCC--ceeeeEeecCCCCCcE
Confidence 0000 111246999999999998 245689999999999999999998888776433 3455666555667789
Q ss_pred EEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC-EEEEE
Q 003208 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSV 274 (839)
Q Consensus 196 l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~ 274 (839)
+++|+.++.|++||+. ..+.+..+.+|.+.|.+++|+|+++ .++++
T Consensus 159 ~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~ 205 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLK---------------------------------SGSCSHILQGHRQEILAVSWSPRYDYILATA 205 (408)
T ss_dssp EEEEESSSSEEEEESS---------------------------------SSCCCEEECCCCSCEEEEEECSSCTTEEEEE
T ss_pred EEEEcCCCeEEEEeCC---------------------------------CcceeeeecCCCCcEEEEEECCCCCcEEEEE
Confidence 9999999999999998 6677788899999999999999998 58999
Q ss_pred eCCCcEEEEEcccCccCCCCCceee----------eceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEE
Q 003208 275 SDDRSARIWEVRAEYWKDSDSIEEV----------GSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK 341 (839)
Q Consensus 275 s~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~ 341 (839)
+.|+.|++||++..... ...+ ......+|...|.+++|+ +.+|++++.|+.|++||+ +++...
T Consensus 206 ~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 206 SADSRVKLWDVRRASGC----LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp ETTSCEEEEETTCSSCC----SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred cCCCcEEEEECCCCCcc----cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence 99999999999876421 1100 001336789999999998 579999999999999999 555444
Q ss_pred Eeeccc----CCceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeecc
Q 003208 342 MIKEHI----GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (839)
Q Consensus 342 ~~~~h~----~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (839)
.+..+. ...+........+..+++++.|+.|++||+.. ..+. .+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------------------------------~~~ 331 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT------------------------------MLK 331 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE------------------------------EEC
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee------------------------------eec
Confidence 332221 11122222233445677778899999999854 2222 223
Q ss_pred CCCcceEEEEEecCCe-EEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCcc
Q 003208 417 SKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN 495 (839)
Q Consensus 417 ~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 495 (839)
.|...|++++|+|++. +++++.+|.+..|++....... ..........+ . ......+...+.++.
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP-----DDDETTTKSQL--N-------PAFEDAWSSSDEEGG 397 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC-----CCCceEecccc--c-------cccceeecccCccCc
Confidence 4556799999999985 4555679999988876543321 11100011111 1 122345567778899
Q ss_pred EEEEEE
Q 003208 496 MTIVRV 501 (839)
Q Consensus 496 i~l~~~ 501 (839)
+++|+.
T Consensus 398 ~~~W~~ 403 (408)
T 4a11_B 398 TSAWSH 403 (408)
T ss_dssp ------
T ss_pred eeecCC
Confidence 999965
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.8e-27 Score=257.59 Aligned_cols=260 Identities=18% Similarity=0.279 Sum_probs=212.0
Q ss_pred CCcCccccccCCCc--------eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 2 GKKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 2 ~d~~i~~w~~~~~~--------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
.|++|++|++.+++ |..+|++++|+ |+ +.+|++|. ++.|+|||+.+++.+..+..+.. .|.+++
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~ 183 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWS--HD----GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA-RVGCLS 183 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEE
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC--CC----CCEEEEECCCCeEEEEECcCCeEEEEecCCCC-ceEEEE
Confidence 58899999998876 56789999999 98 78888887 89999999999999999987655 799999
Q ss_pred ecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
|+ ++ .+++++.|+.|++||+... ...+..+.+|.+.|.+++|+| ++.+|++
T Consensus 184 ~~-------~~-----~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~s 234 (401)
T 4aez_A 184 WN-------RH-----VLSSGSRSGAIHHHDVRIA--------------NHQIGTLQGHSSEVCGLAWRS---DGLQLAS 234 (401)
T ss_dssp EE-------TT-----EEEEEETTSEEEEEETTSS--------------SCEEEEEECCSSCEEEEEECT---TSSEEEE
T ss_pred EC-------CC-----EEEEEcCCCCEEEEecccC--------------cceeeEEcCCCCCeeEEEEcC---CCCEEEE
Confidence 97 44 7788888999999999743 345677889999999999999 9999999
Q ss_pred EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc-ceEEEEee--cCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 153 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~l~sg~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
|+.|+.|++||+.+++.+..+..+.. .+.++.+ +++ ..++++|+ .|+.|++||+.
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~---~p~~~~ll~~~~gs~d~~i~i~d~~------------------ 292 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAW---CPWQSNLLATGGGTMDKQIHFWNAA------------------ 292 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSS-CCCEEEE---CTTSTTEEEEECCTTTCEEEEEETT------------------
T ss_pred EeCCCeEEEccCCCCCccEEecCCcc-eEEEEEE---CCCCCCEEEEecCCCCCEEEEEECC------------------
Confidence 99999999999999988888765543 3445555 353 45677765 79999999998
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcccCccCCCCCceeeeceEeecc
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (839)
..+.+..+. |...|.+++|+|+++.+++++ .|+.|++||+.+... .. . ..+.+|
T Consensus 293 ---------------~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-----~~-~--~~~~~h 348 (401)
T 4aez_A 293 ---------------TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-----TK-Q--VDIPAH 348 (401)
T ss_dssp ---------------TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-----EE-E--EEEECC
T ss_pred ---------------CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-----ee-E--EEecCC
Confidence 566666665 668899999999999999954 899999999987543 11 1 256789
Q ss_pred ccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEe
Q 003208 308 NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 308 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~ 343 (839)
...|.+++|+ +.+|++++.||.|++|++ +++.+...
T Consensus 349 ~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 349 DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999998 689999999999999999 66655544
No 98
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=2.7e-25 Score=270.20 Aligned_cols=442 Identities=9% Similarity=-0.007 Sum_probs=286.7
Q ss_pred cCccccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCC
Q 003208 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (839)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 83 (839)
+|+++|.+....+.+.+...+|| ++ .|+....+.|++|++.+++. ..+..+.. .+.+++|| ||
T Consensus 1 ~~~kl~~~~g~~~~~~~~~~~~S--~~------~iaf~~~~~l~~~~~~gg~~-~~lt~~~~-~v~~~~~S-------PD 63 (1045)
T 1k32_A 1 KTFKLHEMHGLCMPNLLLNPDIH--GD------RIIFVCCDDLWEHDLKSGST-RKIVSNLG-VINNARFF-------PD 63 (1045)
T ss_dssp ------------CCCCCEEEEEE--TT------EEEEEETTEEEEEETTTCCE-EEEECSSS-EEEEEEEC-------TT
T ss_pred CcccccccccccccceEeCcEEe--CC------EEEEEECCcEEEEECCCCcE-EEeeeCCC-cccCeEEC-------CC
Confidence 46788887655567789999999 54 66666678999999987764 45555444 69999999 99
Q ss_pred ccceeeEEEEE-c------CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce-------EEEEEeeccCCCcE
Q 003208 84 STRVTFEVALF-G------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-------FDVCFLKVCNGNRS 149 (839)
Q Consensus 84 ~~~~~~~l~~~-~------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I-------~~~~~~~~~~~~~~ 149 (839)
|+ .|+.. . +..|++|++.. + ....+..|...+ .+++|+| ++++
T Consensus 64 G~----~la~~s~~~~~~~~~~i~~~d~~~---------------g-~~~~lt~~~~~~~~~~~~~~~~~~Sp---Dg~l 120 (1045)
T 1k32_A 64 GR----KIAIRVMRGSSLNTADLYFYNGEN---------------G-EIKRITYFSGKSTGRRMFTDVAGFDP---DGNL 120 (1045)
T ss_dssp SS----EEEEEEEESTTCCEEEEEEEETTT---------------T-EEEECCCCCEEEETTEECSEEEEECT---TCCE
T ss_pred CC----EEEEEEeeccCCCCCeEEEEECCC---------------C-CeEEcccCCCcccccccccccccCCC---CCEE
Confidence 94 44433 2 24788888764 2 246677888888 9999999 9987
Q ss_pred EEEEeCC------CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC------------CeEEEEEee
Q 003208 150 LAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------------NEIIVWKVD 211 (839)
Q Consensus 150 las~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d------------g~i~vw~~~ 211 (839)
+++++.+ ..|.+|++.+++.......+... +.+ ++ + ++++++.+ ....+|...
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~----~~~---sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH----ILF---AD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE----EEE---ET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcce----eee---CC-C-EEEEeccCCCccccccccCCCcCCEEEEC
Confidence 7777754 35888888776543322222222 222 35 6 77776532 334555433
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccC
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 291 (839)
.......+.+|.+.+.++.|+++ ..+++++.|+.+++|.+......
T Consensus 192 ---------------------------------~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~ 237 (1045)
T 1k32_A 192 ---------------------------------NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD 237 (1045)
T ss_dssp ---------------------------------ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS
T ss_pred ---------------------------------CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc
Confidence 12334456899999999999988 66778888999999987642210
Q ss_pred CCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeec-----------ccCCceEEEEEc-
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE-----------HIGRGIWRCLYD- 357 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~-----------h~~~~i~~~~~~- 357 (839)
.+ .+..|. .+...+|+ +..++.+ .++.|++|++....+..+.. |.. .+.+++|+
T Consensus 238 ----~~-----~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~-~v~~~~~S~ 305 (1045)
T 1k32_A 238 ----LR-----KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIP-SKFAEDFSP 305 (1045)
T ss_dssp ----CE-----ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECG-GGGEEEEEE
T ss_pred ----ce-----EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCccccccccccccc-ccceeeecC
Confidence 11 333443 34455676 5677776 48999999995555555554 222 48899999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCc-ceEEEEEecCCeEEEE
Q 003208 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE-YVRCLHLTSEDTLYIA 436 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~ 436 (839)
|+|+.|++++ ++.|.+|++.......+. .+.. .+..++|+ ++..++.
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTYVLKVP------------------------------EPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSBEEECS------------------------------CCSCEEEEEECSS-SEEEEEE
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCceEEcc------------------------------CCCcceEEeeeEc-CCCeEEE
Confidence 9999988888 789999998543211111 1223 58889999 8855544
Q ss_pred -eccceEE-EEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeee
Q 003208 437 -TNHGYLY-HTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTF 514 (839)
Q Consensus 437 -~~~g~i~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~ 514 (839)
+.++.++ .+++.. .....+. .+...+..+++++++ +.+++++.++.|++|++.+++....
T Consensus 354 ~s~~~~l~~~~d~~~---~~~~~l~--~~~~~~~~~~~SpDG--------~~la~~~~~~~v~~~d~~tg~~~~~----- 415 (1045)
T 1k32_A 354 GTREGDFLGIYDYRT---GKAEKFE--ENLGNVFAMGVDRNG--------KFAVVANDRFEIMTVDLETGKPTVI----- 415 (1045)
T ss_dssp EETTEEEEEEEETTT---CCEEECC--CCCCSEEEEEECTTS--------SEEEEEETTSEEEEEETTTCCEEEE-----
T ss_pred EECCCceEEEEECCC---CCceEec--CCccceeeeEECCCC--------CEEEEECCCCeEEEEECCCCceEEe-----
Confidence 4444454 444332 2222332 334567777776654 8999999999999999977653211
Q ss_pred EeeccceeEEeeEEEeecCCCeEEEEeCCC----------CcEEEeeecCCCCcccccCCccceeeeeeccccccCceEE
Q 003208 515 TWSAGIERQLLGTYWCKSLGHRFIFTADPK----------GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (839)
Q Consensus 515 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 584 (839)
...+...+.. ++++|||++|++++.+ +.|++||+.+... .....|...+.
T Consensus 416 --~~~~~~~v~~--~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~----------------~~l~~~~~~~~ 475 (1045)
T 1k32_A 416 --ERSREAMITD--FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI----------------FAATTENSHDY 475 (1045)
T ss_dssp --EECSSSCCCC--EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE----------------EECSCSSSBEE
T ss_pred --ccCCCCCccc--eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE----------------EEeeCCCcccC
Confidence 1112222222 5689999999887654 3899999986531 11124566788
Q ss_pred EEeeecCCCEEEEecCCccEEEEecc
Q 003208 585 CLDASFEDEVLFCGDLRGNLVLFPLL 610 (839)
Q Consensus 585 ~l~~s~~~~~la~gs~dg~i~iw~~~ 610 (839)
+++|+|||++|++++.++...+|+..
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CceEcCCCCEEEEEecccCCcCcchh
Confidence 89999999999999998888888754
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-29 Score=266.94 Aligned_cols=317 Identities=10% Similarity=0.024 Sum_probs=228.0
Q ss_pred cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEE
Q 003208 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (839)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw 208 (839)
+...++|.+++|+| ||+++||++.|++|+ |...++.+ .+ +...++++.| +|+| .++.+.+|
T Consensus 12 ~~~~~~v~sv~~Sp---DG~~iASas~D~TV~--d~~~~~~l---~g-h~~~v~~V~F---sPdg-------~~~~~~~~ 72 (588)
T 2j04_A 12 KEFEDWKNNLTWAR---DGTLYLTTFPDISIG--QPKYAKDI---NC-NSKNLFHVKE---FPLE-------FENKLDFE 72 (588)
T ss_dssp CCCSSSSCCEEECT---TSCEEEECSSSEEEE--EECCCSCC---SS-BGGGTEEEEE---ECCC-------CCCTTTTS
T ss_pred hHhhccEEEEEECC---CCCEEEEEcCCceee--ccccccee---cC-CCccEEEEEE---CCCC-------CcceEEEE
Confidence 45668999999999 999999999999999 76666544 33 3445777776 4666 44555555
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
+.+ +.....+ .|...|.+++|+|+|.+|++++.||.|++||...
T Consensus 73 ~~~----------------------------------~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~- 116 (588)
T 2j04_A 73 LAQ----------------------------------QNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK- 116 (588)
T ss_dssp CCC----------------------------------SSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred eCC----------------------------------CceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence 433 1111111 4688999999999999999999999999999544
Q ss_pred ccCCCCCceeeeceEeecccc-----ceEEeEEC--CCEEEEEeCCCeEEEEcC-CCc-------eEEEe----ecccCC
Q 003208 289 YWKDSDSIEEVGSSVLYGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGK-------QLKMI----KEHIGR 349 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~-------~~~~~----~~h~~~ 349 (839)
. . ..+. |.. .|.+++|+ +++|++|+.||+|++||+ .+. .+.++ .+|..
T Consensus 117 -~-----l-----~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~- 183 (588)
T 2j04_A 117 -M-----L-----TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD- 183 (588)
T ss_dssp -E-----E-----EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-
T ss_pred -e-----e-----eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc-
Confidence 2 1 1334 554 59999999 689999999999999999 443 35666 55666
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeec-cCCCcceEEEEEe
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT-DSKSEYVRCLHLT 428 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~ 428 (839)
.|.+++|+|+| +++++.|+.|++|++.+....+ ....+ ..|...|.+++|+
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~--------------------------~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP--------------------------VSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------------------CEEEEECCCSSCCCCEEEE
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------------------ceeeecccccCcEEEEEEE
Confidence 69999999999 8899999999999996643211 00001 1233569999999
Q ss_pred cCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeee--cCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCC
Q 003208 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDL--LSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (839)
Q Consensus 429 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~ 506 (839)
+ ..++++.++.|..|++... .. ......+...+..+.+ .++ ...+++++++|. ++|..+.
T Consensus 236 -g-~~LASa~~~tIkLWd~~~~---~~-~~~~~gh~~~V~~va~~~s~d--------~~~La~a~edG~-klw~~d~--- 297 (588)
T 2j04_A 236 -D-YKVVLTCPGYVHKIDLKNY---SI-SSLKTGSLENFHIIPLNHEKE--------STILLMSNKTSY-KVLLEDE--- 297 (588)
T ss_dssp -T-TEEEEECSSEEEEEETTTT---EE-EEEECSCCSCCCEEEETTCSS--------CEEEEECSSCEE-EEEESSS---
T ss_pred -C-CEEEEEeCCeEEEEECCCC---eE-EEEEcCCCceEEEEEeeeCCC--------CCEEEEEcCCCC-EEEeecc---
Confidence 4 5555556788877665433 21 1333235677777777 444 478999999999 9997641
Q ss_pred CCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEE
Q 003208 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (839)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 586 (839)
..++|++..+++. |+++++|+...... ..+ .+...|.++
T Consensus 298 ----------------------~~~spd~~l~a~~--d~~v~lW~~~g~~l---------------~~~--~~~~~I~~v 336 (588)
T 2j04_A 298 ----------------------LHVTADNIIAPYL--EKKFKKWSTIWNEF---------------NNY--ETTLVIHGI 336 (588)
T ss_dssp ----------------------EEEECCCSSHHHH--HHHHHHTTTTTTSS---------------SSS--CCEEEEEEE
T ss_pred ----------------------EEECCCceEEEEc--CCEEEEEECCCCce---------------eee--ccceEEEEE
Confidence 2377888888775 89999999764431 011 235569999
Q ss_pred eeecCCCEEEEecC
Q 003208 587 DASFEDEVLFCGDL 600 (839)
Q Consensus 587 ~~s~~~~~la~gs~ 600 (839)
+|||||++||+++.
T Consensus 337 a~SPdG~~lA~~~~ 350 (588)
T 2j04_A 337 SLSPDGYSIAIVYD 350 (588)
T ss_dssp EECTTSSEEEEEEE
T ss_pred EECCCCCEEEEEEe
Confidence 99999999999863
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=1.9e-27 Score=251.66 Aligned_cols=273 Identities=15% Similarity=0.110 Sum_probs=217.7
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCe---eeeEEeeecCceEEeEEecccccccCCCccceee-
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF- 89 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~- 89 (839)
.|.++|++++|+ |+ +.+|++++ |+.|+|||+.+++ .+..+..+ ...|.+++|+ |++ .
T Consensus 9 ~h~~~v~~~~~s--~~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~----~~ 70 (342)
T 1yfq_A 9 APKDYISDIKII--PS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFI-------DNT----DL 70 (342)
T ss_dssp CCSSCEEEEEEE--GG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEE-------ESS----SE
T ss_pred CCCCcEEEEEEc--CC----CCEEEEEcCCCeEEEEEeCCCCccccceeeeec-CCceEEEEEC-------CCC----Cc
Confidence 488999999999 98 78888877 8999999998876 33444444 4479999999 776 5
Q ss_pred EEE-EEcCcEEEEEEe-eccCCCCCCCCCccccceeeeEeccC--CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecC
Q 003208 90 EVA-LFGEKRVKLFEL-NFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (839)
Q Consensus 90 ~l~-~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~ 165 (839)
+++ ++.++.|++|++ .... ...+.+ |...|.+++|+| +.+|++++.|+.|++||+.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~----------------~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS----------------FQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS----------------EEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHH
T ss_pred EEEEEcCCCeEEEEEeccCCc----------------eEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEccc
Confidence 444 456899999999 7432 366778 999999999986 5789999999999999998
Q ss_pred C---------CceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeec-cccccCCCCCCCccCCCCCCCce
Q 003208 166 N---------SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW-EHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 166 ~---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
+ ++.+..+. ....+.++.+ ++++ +++++.|+.|++||+.. .
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~---~~~~--l~~~~~d~~i~i~d~~~~~---------------------- 181 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK--VKNKIFTMDT---NSSR--LIVGMNNSQVQWFRLPLCE---------------------- 181 (342)
T ss_dssp HHTTBCEEEEESCSSSSS--SCCCEEEEEE---CSSE--EEEEESTTEEEEEESSCCT----------------------
T ss_pred ccccccccccCCeeeEEe--eCCceEEEEe---cCCc--EEEEeCCCeEEEEECCccc----------------------
Confidence 6 55554444 2334566666 3444 99999999999999981 0
Q ss_pred eeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcccC------ccCCCCCceeeeceEeeccc
Q 003208 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAE------YWKDSDSIEEVGSSVLYGHN 308 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~h~ 308 (839)
..........|...|.+++|+| +++++++++.|+.|++|+++.. .. . ..+..|.
T Consensus 182 ---------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~-----~~~~~~~ 242 (342)
T 1yfq_A 182 ---------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK-----R-----FAFRCHR 242 (342)
T ss_dssp ---------TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT-----C-----EEEECCC
T ss_pred ---------cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc-----c-----eeeeccc
Confidence 1122334457889999999999 9999999999999999999876 22 2 2455554
Q ss_pred c---------ceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecc-cCCceEEEEEccCCCEEEEEeCCCc-EEE
Q 003208 309 A---------RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSA-IKV 374 (839)
Q Consensus 309 ~---------~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h-~~~~i~~~~~~~~~~~l~t~~~dg~-i~i 374 (839)
. .|.+++|+ +.+|++++.||.|++||+ +++.+..+..| .. +|.+++ |++++|++++.||. .+.
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-EEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-CceEec--CCCCeEEEEecCCccccc
Confidence 4 99999998 588999999999999999 78889999998 76 799999 99999999999998 555
Q ss_pred Ee
Q 003208 375 HQ 376 (839)
Q Consensus 375 w~ 376 (839)
+.
T Consensus 320 ~~ 321 (342)
T 1yfq_A 320 AA 321 (342)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.6e-27 Score=258.91 Aligned_cols=320 Identities=12% Similarity=0.155 Sum_probs=219.1
Q ss_pred CceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC------------
Q 003208 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS------------ 132 (839)
Q Consensus 65 ~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------ 132 (839)
...|.+++|+ |+|+ .+++++.|+.|+||++....... +......+....+.+|.
T Consensus 28 ~~~V~~v~~s-------~~g~---~la~g~~dg~v~iw~~~~~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 93 (447)
T 3dw8_B 28 ADIISTVEFN-------HSGE---LLATGDKGGRVVIFQQEQENKIQ----SHSRGEYNVYSTFQSHEPEFDYLKSLEIE 93 (447)
T ss_dssp GGSEEEEEEC-------SSSS---EEEEEETTSEEEEEEECC---------CCCCCCEEEEEEEECCCCEEEGGGTEEEC
T ss_pred cCcEEEEEEC-------CCCC---EEEEEcCCCeEEEEEecCCCCCC----cccccceeEeccccccccccccccccccc
Confidence 4579999999 8883 45555669999999998643100 00011245677888998
Q ss_pred cceEEEEEeeccCCC--cEEEEEeCCCcEEEEecCCCceE---------------------------------------E
Q 003208 133 HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDISNSSII---------------------------------------L 171 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~--~~las~~~d~~i~vwd~~~~~~~---------------------------------------~ 171 (839)
+.|++++|+| ++ .+|++++.|+.|++||+.++... .
T Consensus 94 ~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 94 EKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp CCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred CceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 8899999999 77 78999999999999999764432 1
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE-
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF- 250 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (839)
.+.......+.++.+ ++++.+|++| .|+.|++||+.. ....+.
T Consensus 171 ~~~~~h~~~v~~~~~---~~~~~~l~s~-~d~~i~iwd~~~--------------------------------~~~~~~~ 214 (447)
T 3dw8_B 171 IFANAHTYHINSISI---NSDYETYLSA-DDLRINLWHLEI--------------------------------TDRSFNI 214 (447)
T ss_dssp EECSCCSSCCCEEEE---CTTSSEEEEE-CSSEEEEEETTE--------------------------------EEEEEEE
T ss_pred EeccCCCcceEEEEE---cCCCCEEEEe-CCCeEEEEECCC--------------------------------CCceeee
Confidence 222223344556666 5789999998 799999999871 112222
Q ss_pred ------EEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeecccc------------ce
Q 003208 251 ------RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------RV 311 (839)
Q Consensus 251 ------~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------~v 311 (839)
.+.+|...|.+++|+|++ ++|++++.|+.|++||++..... .... ..+.+|.. .|
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~v 288 (447)
T 3dw8_B 215 VDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC----DRHS--KLFEEPEDPSNRSFFSEIISSI 288 (447)
T ss_dssp EECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS----CTTC--EEECCC-----CCHHHHHTTCE
T ss_pred eecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc----ccee--eEeccCCCccccccccccCceE
Confidence 256899999999999998 99999999999999999886531 0001 25555654 89
Q ss_pred EEeEEC--CCEEEEEeCCCeEEEEcC-C-CceEEEeecccCC--------------ceEEEEEccCCCEEEEEeCCCcEE
Q 003208 312 WDCCLT--DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGR--------------GIWRCLYDSLSSLLVTAGFDSAIK 373 (839)
Q Consensus 312 ~~~~~~--~~~l~s~~~dg~i~vw~~-~-~~~~~~~~~h~~~--------------~i~~~~~~~~~~~l~t~~~dg~i~ 373 (839)
.+++|+ +.+|++++. +.|++||+ . ++++..+..|... .+..++|+|++++|++|+.||.|+
T Consensus 289 ~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 289 SDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred EEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 999998 579999998 99999999 4 7888888887530 023489999999999999999999
Q ss_pred EEecCCcCccCcCCCCcccc---cCCCcceEEeecCCCccce-eeccCCCcceEEEEEecCCeEEEEeccceEEEE
Q 003208 374 VHQFQAFLPGSLESHPEAKE---FNGRTEIFSIKIPNFSEQI-RLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (839)
Q Consensus 374 iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~ 445 (839)
+||++......++.+..... ......+. ...+...... .........|..++|+|++.+++.+..+.+++|
T Consensus 368 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 368 MFDRNTKRDITLEASRENNKPRTVLKPRKVC-ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp EEETTTCCEEEEECCSTTCCTTCBCCCCCEE-CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred EEEcCCCcceeeeecccccccccccCCcccc-ccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeee
Confidence 99997644333333321110 00000000 0000000000 001123456899999999988888777777655
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-26 Score=249.96 Aligned_cols=256 Identities=16% Similarity=0.260 Sum_probs=203.1
Q ss_pred CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCc
Q 003208 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (839)
Q Consensus 54 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 133 (839)
|+++..++.|.. .|.+++|+ |+++ .+++++.|+.|+||++.... .+.+..+.+|.+
T Consensus 1 G~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~~h~~ 56 (379)
T 3jrp_A 1 GSMVVIANAHNE-LIHDAVLD-------YYGK---RLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEG 56 (379)
T ss_dssp ----CCEEECCC-CEEEEEEC-------SSSS---EEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSS
T ss_pred CCccEEecCCcc-cEEEEEEc-------CCCC---EEEEEECCCcEEEEecCCCc-------------ceeeeEecCCCC
Confidence 456677787665 79999999 8873 45555669999999998433 677888999999
Q ss_pred ceEEEEEeeccCC--CcEEEEEeCCCcEEEEecCCCc--eEEEEecCCceeEEEEeeccCCcc--ceEEEEeecCCeEEE
Q 003208 134 WVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIV 207 (839)
Q Consensus 134 ~I~~~~~~~~~~~--~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~--~~~l~sg~~dg~i~v 207 (839)
.|++++|+| + +.+|++|+.|+.|++||+.+++ .+..+..+. ..+.++.+ +++ +.++++++.|+.|++
T Consensus 57 ~v~~~~~~~---~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 57 PVWRVDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp CEEEEEECC---GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEE
T ss_pred cEEEEEeCC---CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-cceEEEEe---CCCCCCCEEEEecCCCcEEE
Confidence 999999997 5 8999999999999999999887 455554443 34666766 566 889999999999999
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-------------CCCEEEEE
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSV 274 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-------------~~~~l~s~ 274 (839)
||+... .......+.+|...|.+++|+| ++.+|+++
T Consensus 130 ~d~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 130 VEFKEN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EECCTT-------------------------------SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EecCCC-------------------------------CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 999811 1233446778999999999999 69999999
Q ss_pred eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEEEeCCCeEEEEcC-CCc---eEEEe--
Q 003208 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGK---QLKMI-- 343 (839)
Q Consensus 275 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~~~dg~i~vw~~-~~~---~~~~~-- 343 (839)
+.|+.|++||++.... ..... ..+.+|...|.+++|++ .+|++++.||.|++||+ .+. ....+
T Consensus 179 ~~dg~i~i~d~~~~~~-----~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQ-----TYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ETTSCEEEEEEETTTT-----EEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred eCCCeEEEEEecCCCc-----ceeeE-EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence 9999999999987653 11111 36778999999999983 58999999999999999 432 22222
Q ss_pred ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 344 ~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
..|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 253 ~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 23666 69999999999999999999999999985
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-26 Score=249.63 Aligned_cols=249 Identities=18% Similarity=0.183 Sum_probs=199.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECC--CCeeeeEEeeecCceEEeEEecccccccCCC--ccceeeE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGISCNFINCTEGSV--STRVTFE 90 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~--~~~~~~~ 90 (839)
|.++|++++|+ |+ +++|++|. |+.|+|||+. +++.+..+..|.. .|.+++|+ ++ ++ .+
T Consensus 10 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~~---~l 72 (379)
T 3jrp_A 10 HNELIHDAVLD--YY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWA-------HPKFGT---IL 72 (379)
T ss_dssp CCCCEEEEEEC--SS----SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC-------CGGGCS---EE
T ss_pred CcccEEEEEEc--CC----CCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeC-------CCCCCC---EE
Confidence 88999999999 99 88888887 8999999998 5567777776655 79999998 44 52 56
Q ss_pred EEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC--CcEEEEEeCCCcEEEEecCCCc
Q 003208 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 91 l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~las~~~d~~i~vwd~~~~~ 168 (839)
++++.|+.|++||+.... ...+..+.+|...|.+++|+| + +.+|++++.|+.|++||+.+..
T Consensus 73 ~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp EEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCTTS
T ss_pred EEeccCCEEEEEEcCCCc-------------eeEeeeecCCCcceEEEEeCC---CCCCCEEEEecCCCcEEEEecCCCC
Confidence 666779999999998643 457788889999999999999 8 8999999999999999998774
Q ss_pred e--EEEEecCCceeEEEEeeccCCc-------------cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCC
Q 003208 169 I--ILEVHSPERCLLYSMKLWGDNL-------------EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (839)
Q Consensus 169 ~--~~~~~~~~~~~~~s~~~~~~~~-------------~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (839)
. ...+..+. ..+.++.+ ++ ++.++++|+.||.|++||++.+.
T Consensus 137 ~~~~~~~~~~~-~~v~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------- 193 (379)
T 3jrp_A 137 TTSPIIIDAHA-IGVNSASW---APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------- 193 (379)
T ss_dssp CCCEEEEECCT-TCEEEEEE---CCCC----------CTTCEEEEEETTSCEEEEEEETTT-------------------
T ss_pred ceeeEEecCCC-CceEEEEE---cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-------------------
Confidence 3 33333333 33556666 34 68999999999999999998211
Q ss_pred ceeeEeecccccceeeEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccc
Q 003208 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (839)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (839)
........+.+|...|.+++|+|+ +++|++++.|+.|++||+..... ...........|...
T Consensus 194 ----------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~ 258 (379)
T 3jrp_A 194 ----------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDV 258 (379)
T ss_dssp ----------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSC
T ss_pred ----------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-----cceeeeeccccCCCc
Confidence 023456678899999999999999 89999999999999999988643 111111234458889
Q ss_pred eEEeEEC--CCEEEEEeCCCeEEEEcC
Q 003208 311 VWDCCLT--DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 311 v~~~~~~--~~~l~s~~~dg~i~vw~~ 335 (839)
|++++|+ +.+|++++.||.|++|++
T Consensus 259 v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 259 LWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 9999998 679999999999999998
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.7e-26 Score=252.95 Aligned_cols=281 Identities=18% Similarity=0.280 Sum_probs=220.7
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
..|.++++. .+ .+++++.|+.|++||+.+ ++....+.+|.+.|++++|
T Consensus 134 ~~v~~~~~d-------~~-----~l~~g~~dg~i~iwd~~~---------------~~~~~~~~~h~~~v~~l~~----- 181 (435)
T 1p22_A 134 KGVYCLQYD-------DQ-----KIVSGLRDNTIKIWDKNT---------------LECKRILTGHTGSVLCLQY----- 181 (435)
T ss_dssp CCEEEEECC-------SS-----EEEEEESSSCEEEEESSS---------------CCEEEEECCCSSCEEEEEC-----
T ss_pred CcEEEEEEC-------CC-----EEEEEeCCCeEEEEeCCC---------------CeEEEEEcCCCCcEEEEEE-----
Confidence 358887764 22 677777899999999875 5677888999999999988
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
++++|++|+.||.|++||+.+++.+..+..+.. .+.++.+ ++..+++|+.||.|++||+..++
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~-----~~~~l~s~s~dg~i~vwd~~~~~----------- 244 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-AVLHLRF-----NNGMMVTCSKDRSIAVWDMASPT----------- 244 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS-CEEEEEC-----CTTEEEEEETTSCEEEEECSSSS-----------
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-cEEEEEE-----cCCEEEEeeCCCcEEEEeCCCCC-----------
Confidence 567999999999999999999999988876654 3566665 24599999999999999998111
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
.......+.+|...|.+++| +++++++++.|+.|++||+++.+. . ..+.
T Consensus 245 -------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-----~-----~~~~ 293 (435)
T 1p22_A 245 -------------------DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-----V-----RTLN 293 (435)
T ss_dssp -------------------CCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-----E-----EEEE
T ss_pred -------------------CceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-----E-----EEEc
Confidence 11223667899999999999 778999999999999999988755 2 3677
Q ss_pred ccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccC
Q 003208 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGS 384 (839)
Q Consensus 306 ~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~ 384 (839)
+|...|.++.|.++++++|+.||.|++||+ +++++..+.+|.. .|.++++ ++.+|++|+.||.|++||+.......
T Consensus 294 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 294 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 899999999999999999999999999999 7899999999988 6999998 67899999999999999984321000
Q ss_pred cCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCC
Q 003208 385 LESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (839)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 450 (839)
. +...........|...|.+++|. +..+++++.+|.+..|++.+.
T Consensus 371 ~--------------------~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 371 A--------------------PAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp S--------------------CTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC----
T ss_pred c--------------------cccchheeeccCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCC
Confidence 0 00011223344566789999993 346677777999988877554
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.2e-26 Score=244.06 Aligned_cols=286 Identities=13% Similarity=0.098 Sum_probs=200.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeE-EEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE-VALF 94 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~-l~~~ 94 (839)
|..+|+|++|+ || +.+|++|.+..++|||+.+++.+..... . .+..+++. ++++ .+ ++.+
T Consensus 18 h~~~V~~v~fs--~d----g~~la~g~~~~~~iw~~~~~~~~~~~~~-~--~~~~~~~~-------~~~~---~~~~~~~ 78 (355)
T 3vu4_A 18 VSNPVTDYEFN--QD----QSCLILSTLKSFEIYNVHPVAHIMSQEM-R--HLSKVRML-------HRTN---YVAFVTG 78 (355)
T ss_dssp -CCCCCEEEEC--TT----SSEEEEECSSEEEEEEETTEEEEEEEEC-S--CCCEEEEC-------TTSS---EEEEECS
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCEEEEEecCCcceeeeeec-C--CeEEEEEc-------CCCC---EEEEEEC
Confidence 77899999999 99 8999999977799999998876655442 2 36666666 4442 34 3345
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-ceEEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-~~~~~~ 173 (839)
++++|+|||+.+ .+.+..+. |...|.++++++ + .++++. |+.|++||+.+. +.+..+
T Consensus 79 ~d~~v~iWd~~~---------------~~~~~~~~-~~~~v~~v~~~~---~--~~~~~~-~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 79 VKEVVHIWDDVK---------------KQDVSRIK-VDAPVKDLFLSR---E--FIVVSY-GDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp STTEEEEEETTT---------------TEEEEEEE-CSSCEEEEEECS---S--EEEEEE-TTEEEEEESSTTCCBSSCC
T ss_pred CccEEEEEECCC---------------CcEEEEEE-CCCceEEEEEcC---C--EEEEEE-cCEEEEEECCCCceeeEEe
Confidence 578999999875 34555665 667899999987 4 344443 789999999987 655544
Q ss_pred ecCCceeEEEEeeccCCccceEEEE--eecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee-eE
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LF 250 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~s--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 250 (839)
..+ ..+.+ + ++ .+++. |+.+|.|++||+..++....... .. ......+ +.
T Consensus 137 ~~~--~~~~~--~---s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~--------------~~----~~~~~~p~~~ 189 (355)
T 3vu4_A 137 IRF--GGVCE--F---SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQ--------------GV----QQKAILGKGV 189 (355)
T ss_dssp EEE--EEEEE--E---ET--TEEEEEESSCTTCEEEEECCC------------------------------------CCE
T ss_pred ccC--CceEE--E---Ec--cEEEEeCCCcCcEEEEEECCCCCccccccc--------------cc----cccccCcccE
Confidence 431 11222 2 23 34444 78999999999983221000000 00 0001123 67
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcccCccCCCCCceeeeceEee-c-cccceEEeEEC--CCEEEEEe
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLY-G-HNARVWDCCLT--DSFIITAG 325 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~--~~~l~s~~ 325 (839)
.+.+|.+.|.+++|+|++++|++++.|++ |++||+++++. +. .+. + |...|.+++|+ +.+|++++
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-----~~-----~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL-----VR-----EFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE-----EE-----EEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE-----EE-----EEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 78999999999999999999999999998 99999998765 22 454 5 99999999999 58999999
Q ss_pred CCCeEEEEcC-CCc--eEEEee--------------------cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 326 EDCTCRVWGS-DGK--QLKMIK--------------------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 326 ~dg~i~vw~~-~~~--~~~~~~--------------------~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.|++|++||+ .+. ....+. .....+...++|+++++.|++++.||.+++|++..
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 9999999998 321 111110 01111235689999999999999999999999843
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=5.1e-26 Score=240.73 Aligned_cols=298 Identities=15% Similarity=0.118 Sum_probs=220.1
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEeCCC
Q 003208 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDC 328 (839)
Q Consensus 252 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg 328 (839)
..+|.+.|.+++|+|++++|++++.|+.|++|++..... .... ....+|...|.+++|+ +. ++++++.||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDL--LQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEE--EEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----cccc--eeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 358999999999999999999999999999999987652 1111 2566899999999998 67 899999999
Q ss_pred eEEEEcC-CCceEEEeec--ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeec
Q 003208 329 TCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~~--h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (839)
.|++|++ .......+.. |.. .|.+++|+| +.++++++.|+.|++||++...... ....
T Consensus 80 ~i~~wd~~~~~~~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~---------------~~~~-- 140 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV---------------IAVK-- 140 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC---------------EEEE--
T ss_pred eEEEEEeccCCceEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc---------------cccc--
Confidence 9999999 8777788888 888 799999999 9999999999999999985300000 0000
Q ss_pred CCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecC-CCCceeEEEeeecCCCceEEeeecC-CCCCCCCCC
Q 003208 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD-MDSVNWNKILQVSEGMPIICMDLLS-NEPKYPCGI 483 (839)
Q Consensus 406 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 483 (839)
........ +...|.+++|++++ +++++.++.+..|++.. ..... ..........+.++.+.+ +.
T Consensus 141 ---~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~------- 206 (342)
T 1yfq_A 141 ---NLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNG--TIEESGLKYQIRDVALLPKEQ------- 206 (342)
T ss_dssp ---ESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCC--EEEECSCSSCEEEEEECSGGG-------
T ss_pred ---CCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccc--eeeecCCCCceeEEEECCCCC-------
Confidence 00000111 34579999999987 88889999999888766 32211 223344567788888876 53
Q ss_pred CcEEEEeCCCccEEEEEEcCC--CCCCcceeeeEeecc------ceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCC
Q 003208 484 DDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAG------IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (839)
Q Consensus 484 ~~~l~~g~~dg~i~l~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~ 555 (839)
.++++++.||.|++|+++.. .........+..+.. +...+.. ++++|++++|++++.||.|++||+.+.
T Consensus 207 -~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 207 -EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS--IEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp -CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE--EEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred -CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEE--EEEcCCCCEEEEecCCceEEEEcCccH
Confidence 79999999999999999765 111111112222211 1113434 568999999999999999999999865
Q ss_pred CCcccccCCccceeeeeecccccc-CceEEEEeeecCCCEEEEecCCcc-EEEEec
Q 003208 556 FSSVCYESSKTNNVFLVAEFSSCF-GARIMCLDASFEDEVLFCGDLRGN-LVLFPL 609 (839)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~~la~gs~dg~-i~iw~~ 609 (839)
.. ...+ .+| ...|++++ |++++|++|+.||+ .+.|..
T Consensus 284 ~~--------------~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 284 KK--------------IKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EE--------------EEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred hH--------------hhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 42 1222 245 89999999 99999999999998 555553
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=5.8e-27 Score=253.93 Aligned_cols=285 Identities=14% Similarity=0.098 Sum_probs=218.2
Q ss_pred eeEEEEecCCCCCCCcceEE-Eee-CCeeEEEECCCCe----eeeEEeeecCceEEeEEecccccccCC-CccceeeEEE
Q 003208 20 ISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVA 92 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~-~g~-~~~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~l~ 92 (839)
...++++ |+ ...++ ++. ||.|+||++.+.. .+..+..|.. .|.+++|+ | +++ .+++
T Consensus 37 ~~~~~~~--~~----~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~-------p~~~~---~l~s 99 (402)
T 2aq5_A 37 SGFCAVN--PK----FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-PVLDIAWC-------PHNDN---VIAS 99 (402)
T ss_dssp SCSEEEC--SS----EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS-CEEEEEEC-------TTCTT---EEEE
T ss_pred CCcEEEC--CC----eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC-CEEEEEeC-------CCCCC---EEEE
Confidence 4568888 76 43333 344 8999999986542 2334555544 79999999 7 553 5556
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC-cEEEEEeCCCcEEEEecCCCceEE
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
++.|+.|+||++........ ..+.+..+.+|...|.+++|+| ++ .+|++++.|+.|++||+.+++.+.
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~~ 168 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLP--------LREPVITLEGHTKRVGIVAWHP---TAQNVLLSAGCDNVILVWDVGTGAAVL 168 (402)
T ss_dssp EETTSEEEEEECCTTCCSSC--------BCSCSEEEECCSSCEEEEEECS---SBTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EeCCCeEEEEEccCCCCccc--------cCCceEEecCCCCeEEEEEECc---CCCCEEEEEcCCCEEEEEECCCCCccE
Confidence 66799999999986431100 0145677889999999999999 87 699999999999999999999988
Q ss_pred EEe-cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 172 EVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 172 ~~~-~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
.+. ......+.++.+ ++++.+|++++.||.|++||++ ..+.+.
T Consensus 169 ~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~~~ 212 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDW---SRDGALICTSCRDKRVRVIEPR---------------------------------KGTVVA 212 (402)
T ss_dssp EECTTTCCSCEEEEEE---CTTSSCEEEEETTSEEEEEETT---------------------------------TTEEEE
T ss_pred EEecCCCCCceEEEEE---CCCCCEEEEEecCCcEEEEeCC---------------------------------CCceee
Confidence 883 233345677776 5789999999999999999998 667777
Q ss_pred EE-ecCCCC-eEEEEEcCCCCEEEEE---eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEE-
Q 003208 251 RL-VGHEGS-IFRIEWSSCGSKLVSV---SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII- 322 (839)
Q Consensus 251 ~~-~~h~~~-V~~l~~~~~~~~l~s~---s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~- 322 (839)
.+ .+|.+. +.++.|+|++++|+++ +.|+.|++||++..... .. .....|...+.+++|+ +.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~----~~----~~~~~~~~~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP----LS----LQELDTSSGVLLPFFDPDTNIVYL 284 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----SE----EEECCCCSSCEEEEEETTTTEEEE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----ce----EEeccCCCceeEEEEcCCCCEEEE
Confidence 77 788876 9999999999999999 79999999999886431 11 1334577889999998 46775
Q ss_pred EEeCCCeEEEEcC-CCce-EEEeecc--cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 323 TAGEDCTCRVWGS-DGKQ-LKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 323 s~~~dg~i~vw~~-~~~~-~~~~~~h--~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+++.|+.|++|++ .++. +..+..+ .. +|.+++|+|++.++++ .++.+++|++..
T Consensus 285 ~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~-~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 285 CGKGDSSIRYFEITSEAPFLHYLSMFSSKE-SQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EETTCSCEEEEEECSSTTCEEEEEEECCSS-CCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEcCCCeEEEEEecCCCcceEeecccccCC-cccceEEeccccccee--cceeEEEEEcCC
Confidence 5667999999999 5552 5555544 35 6999999999987764 567999999854
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-25 Score=246.82 Aligned_cols=285 Identities=9% Similarity=0.009 Sum_probs=215.1
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe---eeeEEeeec-----------------------------
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQVFH----------------------------- 64 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~---~~~~~~~~~----------------------------- 64 (839)
..|+++++|+ ++ +++|+++.++.|++||+.+|+ .+..+..+.
T Consensus 4 ~~p~~~v~~s--~d----g~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 4 IHPLQNLLTS--RD----GSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp ECCCCEEEEC--SS----SSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred cccEEEEEec--CC----CCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence 4689999999 99 789999889999999999998 665554221
Q ss_pred ------------------------CceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccc
Q 003208 65 ------------------------GIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETC 119 (839)
Q Consensus 65 ------------------------~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~ 119 (839)
...|.+++|+ |+++ .+++++ .|+.|+||++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~d~~---~l~~~~~~dg~v~iwd~~~~~----------- 136 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-------SDES---RLIACADSDKSLLVFDVDKTS----------- 136 (450)
T ss_dssp ----------------------CCCCCEEEEEEC-------TTSS---EEEEEEGGGTEEEEEEECSSS-----------
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEc-------CCCC---EEEEEECCCCeEEEEECcCCC-----------
Confidence 1149999999 8884 443554 58999999998211
Q ss_pred cceeeeEecc--CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE----EEecCCceeEEEEeeccCCcc-
Q 003208 120 VNLSLVQSLP--RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL----EVHSPERCLLYSMKLWGDNLE- 192 (839)
Q Consensus 120 ~~~~~~~~~~--~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~s~~~~~~~~~- 192 (839)
++.+..+. .|...|++++|+| ++.+|++|+.++.|++|++.++.... .+..+. ..+.++.+ +++
T Consensus 137 --~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~---sp~~ 207 (450)
T 2vdu_B 137 --KNVLKLRKRFCFSKRPNAISIAE---DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-SMLTDVHL---IKDS 207 (450)
T ss_dssp --SSCEEEEEEEECSSCEEEEEECT---TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-SCEEEEEE---EECT
T ss_pred --CceeeeeecccCCCCceEEEEcC---CCCEEEEEeCCCcEEEEecCCcccccccceeeeccc-CceEEEEE---cCCC
Confidence 23344443 6778999999999 99999999999999999998776443 333333 34556666 577
Q ss_pred --ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE-EecCCCCeEEEEEcCCCC
Q 003208 193 --ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGS 269 (839)
Q Consensus 193 --~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~ 269 (839)
+.+|++|+.|+.|++||+. ..+.+.. +.+|...|.+++|+ +++
T Consensus 208 ~~~~~l~s~~~d~~i~vwd~~---------------------------------~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 208 DGHQFIITSDRDEHIKISHYP---------------------------------QCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp TSCEEEEEEETTSCEEEEEES---------------------------------CTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred CCCcEEEEEcCCCcEEEEECC---------------------------------CCceeeeeecCCCCceEEEEEC-CCC
Confidence 8899999999999999998 5555655 56899999999999 999
Q ss_pred EEEEEeCCCcEEEEEcccCccCCCCCceeeec------e--------------EeeccccceEEeEEC--CCEEEEEe-C
Q 003208 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS------S--------------VLYGHNARVWDCCLT--DSFIITAG-E 326 (839)
Q Consensus 270 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~------~--------------~~~~h~~~v~~~~~~--~~~l~s~~-~ 326 (839)
+|++++.|+.|++||+.+++. ...+.. . ........|.+++|+ +.++++++ .
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKN-----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCE-----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCcE-----eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 999999999999999998765 222210 0 000234568899998 67888888 8
Q ss_pred CCeEEEEcC---CC---ceEEEeecccCCceEEEEEccCCCEEEEEeC------CCcEEEEecC
Q 003208 327 DCTCRVWGS---DG---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKVHQFQ 378 (839)
Q Consensus 327 dg~i~vw~~---~~---~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~------dg~i~iw~~~ 378 (839)
|+.|++|++ .+ +.+..+..+ . .|.+++|+|++.++++++. +..|.+|.++
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~-~-~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFP-Y-NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECS-S-CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccC-C-ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999998 23 556677777 4 6999999996444443333 4568999874
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.4e-25 Score=243.11 Aligned_cols=254 Identities=13% Similarity=0.202 Sum_probs=198.2
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
+...|.+++|+ |++. .+++++ .++.|++|++........ .......+..+.+|...|++++|+|
T Consensus 127 h~~~v~~l~~~-------p~~~---~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 127 HEGEVNRARYM-------PQNA---CVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp ESSCCSEEEEE-------TTEE---EEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred CCCcEEEEEEC-------CCCC---cEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEEEeCC
Confidence 44579999999 7632 455554 589999999975321000 0011456677889999999999999
Q ss_pred ccCCCc-EEEEEeCCCcEEEEecCCCce-------EEEEecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeecc
Q 003208 143 VCNGNR-SLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWE 213 (839)
Q Consensus 143 ~~~~~~-~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~ 213 (839)
++. +|++|+.||.|++||+.++.. ...+..+ ...+.++.+ ++ ++.++++++.||.|++||++..
T Consensus 192 ---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~---~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 192 ---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAW---HLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp ---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEE---CSSCTTEEEEEETTSEEEEEETTCS
T ss_pred ---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEE---eCCCCCEEEEEeCCCeEEEEECCCC
Confidence 877 999999999999999987322 2333333 334666766 34 6789999999999999999811
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCC
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
. ..+.+..+.+|...|.+++|+|+++ .+++++.|+.|++||++.....
T Consensus 265 ~------------------------------~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~- 313 (430)
T 2xyi_A 265 N------------------------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK- 313 (430)
T ss_dssp C------------------------------SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-
T ss_pred C------------------------------CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC-
Confidence 0 1246667789999999999999887 6889999999999999874321
Q ss_pred CCCceeeeceEeeccccceEEeEECC---CEEEEEeCCCeEEEEcCCC---------------ceEEEeecccCCceEEE
Q 003208 293 SDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDG---------------KQLKMIKEHIGRGIWRC 354 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~---------------~~~~~~~~h~~~~i~~~ 354 (839)
+ ..+..|...|.+++|++ .++++++.|+.|++||+.. +.+..+.+|.. .|.++
T Consensus 314 ---~-----~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~ 384 (430)
T 2xyi_A 314 ---L-----HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDF 384 (430)
T ss_dssp ---S-----EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEE
T ss_pred ---e-----EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEE
Confidence 2 36778999999999983 5799999999999999932 66777788887 69999
Q ss_pred EEccCCC-EEEEEeCCCcEEEEecCC
Q 003208 355 LYDSLSS-LLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 355 ~~~~~~~-~l~t~~~dg~i~iw~~~~ 379 (839)
+|+|++. +|++++.||.|++|++..
T Consensus 385 ~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 385 SWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999998 999999999999999965
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-25 Score=243.45 Aligned_cols=256 Identities=12% Similarity=0.126 Sum_probs=192.8
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccC---CC------CC-----CCC--Cccc-----------
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL---SP------NS-----QYQ--PETC----------- 119 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~---~~------~~-----~~~--~~~~----------- 119 (839)
++.+++|+ ++| .+++++.++.|++||+..+. .. .. .+. ++..
T Consensus 6 p~~~v~~s-------~dg----~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 6 PLQNLLTS-------RDG----SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCEEEEC-------SSS----SEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred cEEEEEec-------CCC----CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 68899999 888 57777778999999987643 00 00 000 0000
Q ss_pred ---------------cceeeeEeccCCCcceEEEEEeeccCCCcEE-EEEeCCCcEEEEecC--CCceEEEEecC-Ccee
Q 003208 120 ---------------VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDIS--NSSIILEVHSP-ERCL 180 (839)
Q Consensus 120 ---------------~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~-~~~~ 180 (839)
..........+|.+.|++++|+| ++++| ++|+.|+.|++||+. +++.+..+..+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 151 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR 151 (450)
T ss_dssp -------------------------CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSC
T ss_pred ccccCcCccccccCccccCCCCCCCccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCC
Confidence 00001122346777899999999 99986 899999999999998 88887776532 2233
Q ss_pred EEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeE
Q 003208 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (839)
Q Consensus 181 ~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 260 (839)
+.++.+ ++++.+|++|+.+|.|++|++...+.. ......+.+|...|.
T Consensus 152 v~~~~~---sp~~~~l~~~~~~g~v~~~~~~~~~~~-----------------------------~~~~~~~~~h~~~v~ 199 (450)
T 2vdu_B 152 PNAISI---AEDDTTVIIADKFGDVYSIDINSIPEE-----------------------------KFTQEPILGHVSMLT 199 (450)
T ss_dssp EEEEEE---CTTSSEEEEEETTSEEEEEETTSCCCS-----------------------------SCCCCCSEECSSCEE
T ss_pred ceEEEE---cCCCCEEEEEeCCCcEEEEecCCcccc-----------------------------cccceeeecccCceE
Confidence 556666 689999999999999999998721100 002335678999999
Q ss_pred EEEEcCC---CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-
Q 003208 261 RIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS- 335 (839)
Q Consensus 261 ~l~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~- 335 (839)
+++|+|+ +++|++++.|++|++||+.+... .. ....+|...|.+++|+ +.+|++++.|+.|++||+
T Consensus 200 ~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~----~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-----VD----KWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-----EE----EECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETT
T ss_pred EEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-----ee----eeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECC
Confidence 9999999 99999999999999999987655 22 1356899999999997 889999999999999999
Q ss_pred CCceEEEeeccc------------------------CCceEEEEEccCCCEEEEEe-CCCcEEEEec
Q 003208 336 DGKQLKMIKEHI------------------------GRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (839)
Q Consensus 336 ~~~~~~~~~~h~------------------------~~~i~~~~~~~~~~~l~t~~-~dg~i~iw~~ 377 (839)
+++++..+..+. ...|.+++++|++++|++++ .|+.|++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 788887776331 12588999999999999999 8999999999
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.3e-25 Score=237.01 Aligned_cols=299 Identities=11% Similarity=0.125 Sum_probs=216.9
Q ss_pred EECCCCeeeeEEeeecCceEEeEEecccccccCCC---ccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeee
Q 003208 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV---STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125 (839)
Q Consensus 49 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~---~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 125 (839)
++....+.+..++.|.. .|.+++|+ |+ |+ .+++++.|+.|+||++.... ....
T Consensus 24 ~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~g~---~l~~~~~dg~i~iw~~~~~~-------------~~~~ 79 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDD-SIGCLSFS-------PPTLPGN---FLIAGSWANDVRCWEVQDSG-------------QTIP 79 (368)
T ss_dssp CSSCTTCCEECSSCCSS-CEEEEEEC-------CTTSSSE---EEEEEETTSEEEEEEECTTS-------------CEEE
T ss_pred CCCCCcceeEeccCCCC-ceEEEEEc-------CCCCCce---EEEEECCCCcEEEEEcCCCC-------------ceeE
Confidence 44455566666776655 79999999 76 42 55566679999999998633 3444
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeE
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i 205 (839)
..+.+|...|++++|+| ++++|++++.|+.|++||+.+++.+.... +. ..+.++.+. .++++.+|++++.||.|
T Consensus 80 ~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~-~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSD---DGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HD-APVKTIHWI-KAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp EEEEECSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEE-CS-SCEEEEEEE-ECSSCEEEEEEETTSEE
T ss_pred EEeccccCCEEEEEECc---CCCEEEEEcCCCcEEEEEcCCCCceeecc-cc-CceEEEEEE-eCCCCCEEEEccCCCcE
Confidence 77889999999999999 99999999999999999999988776443 22 234555542 24788999999999999
Q ss_pred EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 003208 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~ 285 (839)
++||++ ..+.+..+..|. .+.++.+.+ ..+++++.|+.+++|++
T Consensus 154 ~vwd~~---------------------------------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 154 KFWDTR---------------------------------SSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQL 197 (368)
T ss_dssp EEECSS---------------------------------CSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEEC
T ss_pred EEEECC---------------------------------CCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEe
Confidence 999998 566677777664 666776654 58899999999999999
Q ss_pred ccCccCCCCCceeeeceEeeccccceEEeEECC----CEEEEEeCCCeEEEEcC-CC---ceEEEeecccCC--------
Q 003208 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DG---KQLKMIKEHIGR-------- 349 (839)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw~~-~~---~~~~~~~~h~~~-------- 349 (839)
...... .... .....|...+.++...+ ..+++++.|+.|++|++ .. ..+..+..|...
T Consensus 198 ~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 198 ENQPSE----FRRI--ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp SSSCEE----EEEC--CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred ccccch----hhhc--cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence 875431 1111 12223333444444443 34999999999999999 33 456677776642
Q ss_pred ---ceEEEEEccCCCEEEEEeCCCcEEEEecCC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEE
Q 003208 350 ---GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (839)
Q Consensus 350 ---~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 425 (839)
+|.+++|+|++++|++++.||.|++||++. ..+.. ...+...|+++
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------~~~~~~~v~~~ 321 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT------------------------------SEQLDQPISAC 321 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE------------------------------CCCCSSCEEEE
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE------------------------------ecCCCCCceEE
Confidence 499999999999999999999999999954 22222 22344679999
Q ss_pred EEecCCeEEE-EeccceEEEEEecC
Q 003208 426 HLTSEDTLYI-ATNHGYLYHTKLCD 449 (839)
Q Consensus 426 ~~~~~~~~~~-~~~~g~i~~~~~~~ 449 (839)
+|+|++.+++ ++.++....+++++
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EECCCCCeEEEEecccccccccccC
Confidence 9999986555 45555443333443
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.2e-25 Score=225.50 Aligned_cols=277 Identities=12% Similarity=0.079 Sum_probs=187.7
Q ss_pred ceEEEeeCCeeEEEECCCC---eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cC-cEEEEEEeeccCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE-KRVKLFELNFELSP 110 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~-~~i~iw~~~~~~~~ 110 (839)
..++++....|++|+..++ +++++.+.+ ..+|..|.+. ||.. .++++. |. ..-.++.+..
T Consensus 55 ~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~---~~~~~~~~~~~~~~v~sla~---- 119 (356)
T 2w18_A 55 PCIITACEDVVSLWKALDAWQWEKLYTWHFA-EVPVLQIVPV-------PDVY---NLVCVALGNLEIREIRALFC---- 119 (356)
T ss_dssp EEEEEEESSEEEEEEESSSSBEEEEEEEECC-SSCEEEECCC-------TTCC---SCEEEEECSSSEEEEEEECC----
T ss_pred cEEEEeccceEEEcccCCCccceeeEEEecc-CceeEEEEEc-------Cccc---ceeeeeeccccccceEEEEE----
Confidence 3566677899999999999 888888854 4589999999 6643 344443 32 1222333321
Q ss_pred CCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe--CCCcEEEEec-CCCceEEEEecCCceeEEEEeec
Q 003208 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLW 187 (839)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~--~d~~i~vwd~-~~~~~~~~~~~~~~~~~~s~~~~ 187 (839)
+|++....+.+.. .+|...|.++ + +++++.+++ .|+.|++|++ .+++.+..+..+... +..+.|.
T Consensus 120 ----spd~~~~~~~l~s-~g~~~~v~~l---~---~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~-v~~l~fs 187 (356)
T 2w18_A 120 ----SSDDESEKQVLLK-SGNIKAVLGL---T---KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE-ETILTFA 187 (356)
T ss_dssp ----------CCEEEEE-EEEEEEEEEE---T---TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS-SCEEEEE
T ss_pred ----CCCccccccEEEe-CCCeEEEEec---C---CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc-eeeEEee
Confidence 1111100111111 3455555543 4 676666644 5999999999 457776655433311 1122221
Q ss_pred cCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC---CCeEEEEE
Q 003208 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE---GSIFRIEW 264 (839)
Q Consensus 188 ~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~l~~ 264 (839)
..+.++.+|++|+.|++|+|||+. +++.++.+.+|. ..+.+++|
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~---------------------------------TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLK---------------------------------TGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETT---------------------------------TCCEEEEEECCC---CCCEEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECC---------------------------------CCcEEEEEcCCCcceeeeEEEEE
Confidence 113477999999999999999998 788888888754 46778899
Q ss_pred cCCCCEE------------EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEE
Q 003208 265 SSCGSKL------------VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (839)
Q Consensus 265 ~~~~~~l------------~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~v 332 (839)
+|++.++ ++|+.|++|++||..++.. +..+......+|...+.+..+++.++++++.|++|+|
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-----l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkI 309 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-----VGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAI 309 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEE-----EEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-----EEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEE
Confidence 9999876 6688999999999988755 2211100024677666677777889999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
||+ +++++.++.+|....+.+++|+|+|++|++|+.|++|++||+
T Consensus 310 WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999 899999999887733446899999999999999999999986
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=6e-25 Score=232.96 Aligned_cols=295 Identities=16% Similarity=0.130 Sum_probs=205.6
Q ss_pred EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc----eEEEEecCCceeEEEEeeccCCc--cceEEEEe
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNL--EALRIASG 199 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~s~~~~~~~~--~~~~l~sg 199 (839)
..+.+|.+.|++++|+| ++++||+|+.|+.|++||+.++. ....+..+.. .+.++.+ ++ ++.+|++|
T Consensus 5 ~~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~---~~~~d~~~l~s~ 77 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDW---ASPEYGRIIASA 77 (351)
T ss_dssp CEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEE---CCGGGCSEEEEE
T ss_pred ccCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEE---cCCCCCCEEEEE
Confidence 35679999999999999 99999999999999999998763 4445554443 4667776 34 58899999
Q ss_pred ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC--CCEEEEEeCC
Q 003208 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDD 277 (839)
Q Consensus 200 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d 277 (839)
+.||.|++||+..++..... ...+.+..+.+|...|.+++|+|+ +.+|++++.|
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSG------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSS------------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCCeEEEEecCCCcccccc------------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 99999999999832211100 022567778899999999999999 9999999999
Q ss_pred CcEEEEEcccCccCCCCCce-eee--ceEeeccccceEEeEEC-----CCEEEEEeCCCeEEEEcC-CCce--EEEeecc
Q 003208 278 RSARIWEVRAEYWKDSDSIE-EVG--SSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS-DGKQ--LKMIKEH 346 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~-~~~--~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~-~~~~--~~~~~~h 346 (839)
+.|++||+++.......... ... ......|...+.+++|+ +.++++++.|+.+.+|+. .++. +..+..|
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 99999999887652111100 000 01223678889999997 579999999999988887 4443 6777788
Q ss_pred cCCceEEEEEccCC----CEEEEEeCCCcEEEEecCCcC-ccCcCCCCcccccC---C-------------CcceEEeec
Q 003208 347 IGRGIWRCLYDSLS----SLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFN---G-------------RTEIFSIKI 405 (839)
Q Consensus 347 ~~~~i~~~~~~~~~----~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~---~-------------~~~~~~~~~ 405 (839)
.. .|.+++|+|++ ++|++|+.||.|++||++... .............. . ......+..
T Consensus 214 ~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 214 KS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp CS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred Cc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 88 69999999998 899999999999999995421 11111100000000 0 000000000
Q ss_pred CCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEecCCCC
Q 003208 406 PNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDS 452 (839)
Q Consensus 406 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~ 452 (839)
............|...|++++|+|++. +++++.+|.+.+|++.....
T Consensus 293 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 001123444567888999999999885 55566789998888765443
No 114
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.8e-24 Score=262.87 Aligned_cols=441 Identities=9% Similarity=-0.010 Sum_probs=289.5
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
.+...+|+ ++ . ++...++.|.+|++..+ ....+.+|...+.+++|+| +
T Consensus 16 ~~~~~~~S-------~~-----~-iaf~~~~~l~~~~~~gg----------------~~~~lt~~~~~v~~~~~SP---D 63 (1045)
T 1k32_A 16 LLLNPDIH-------GD-----R-IIFVCCDDLWEHDLKSG----------------STRKIVSNLGVINNARFFP---D 63 (1045)
T ss_dssp CCEEEEEE-------TT-----E-EEEEETTEEEEEETTTC----------------CEEEEECSSSEEEEEEECT---T
T ss_pred eEeCcEEe-------CC-----E-EEEEECCcEEEEECCCC----------------cEEEeeeCCCcccCeEECC---C
Confidence 47778888 54 3 44444578999998642 2345668999999999999 9
Q ss_pred CcEEEEEeCC------CcEEEEecCCCceEEEEecCCcee------EEEEeeccCCccceEEEEeecC------CeEEEE
Q 003208 147 NRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCL------LYSMKLWGDNLEALRIASGTIY------NEIIVW 208 (839)
Q Consensus 147 ~~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~~~------~~s~~~~~~~~~~~~l~sg~~d------g~i~vw 208 (839)
|++||+++.+ ..|++||+.+++ ...+..+.... +..+.| +|++.++++++.+ ..|.+|
T Consensus 64 G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~---SpDg~ll~~~~~~~~~~~~~~l~~~ 139 (1045)
T 1k32_A 64 GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF---DPDGNLIISTDAMQPFSSMTCLYRV 139 (1045)
T ss_dssp SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEE---CTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccC---CCCCEEEEEECCcCCCcccceEEEE
Confidence 9999987643 379999998776 45555444332 145555 6888877777754 346666
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC------------
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------------ 276 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------------ 276 (839)
++. .+.. ..+..+ ....++|+| | .+++++.
T Consensus 140 ~~~---------------------------------~g~~-~~l~~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g 181 (1045)
T 1k32_A 140 END---------------------------------GINF-VPLNLG--PATHILFAD-G-RRVIGRNTFELPHWKGYRG 181 (1045)
T ss_dssp EGG---------------------------------GTEE-EECCSC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCS
T ss_pred ECC---------------------------------CCCe-EEecCC--CcceeeeCC-C-EEEEeccCCCccccccccC
Confidence 665 3332 223322 234677999 8 8888763
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCC-EEEEEeCCCeEEEEcC--CCceEEEeecccCCceEE
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~ 353 (839)
+...++|....... . ..+.+|...+.++.|+++ ++++++.|+.+++|.+ .+.....+..|.. +..
T Consensus 182 ~~~~~lw~~~~~~~-----~-----~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~--~~~ 249 (1045)
T 1k32_A 182 GTRGKIWIEVNSGA-----F-----KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYP 249 (1045)
T ss_dssp TTCCEEEEEEETTE-----E-----EEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCE
T ss_pred CCcCCEEEECCCCC-----e-----EECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCC--cce
Confidence 33456775433221 1 245789999999999965 5567778899999986 4556666666653 567
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe-cCCe
Q 003208 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT-SEDT 432 (839)
Q Consensus 354 ~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 432 (839)
.+|+|+|+.|+.+ .++.|.+|++....+..+..+.. ........+...+..++|+ |++.
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~-------------------~~~~~~~~~~~~v~~~~~S~pdG~ 309 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDL-------------------ESPEDRIISIPSKFAEDFSPLDGD 309 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCC-------------------CBCCSEEEECGGGGEEEEEECGGG
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcc-------------------cccccccccccccceeeecCCCCC
Confidence 7999999988887 48999999984432222221100 0000001123458899999 9998
Q ss_pred EEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEE-EEEEcCCCCCCcce
Q 003208 433 LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT-IVRVVGDVHTPQLS 511 (839)
Q Consensus 433 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~-l~~~~~~~~~~~~~ 511 (839)
.++...++.++.+++.... ... ...+....+..+.++ + ++.++.++.++.+. +|++.++...
T Consensus 310 ~la~~~~~~i~~~~~~~~~---~~~-~~~~~~~~~~~~~~s-d--------g~~l~~~s~~~~l~~~~d~~~~~~~---- 372 (1045)
T 1k32_A 310 LIAFVSRGQAFIQDVSGTY---VLK-VPEPLRIRYVRRGGD-T--------KVAFIHGTREGDFLGIYDYRTGKAE---- 372 (1045)
T ss_dssp CEEEEETTEEEEECTTSSB---EEE-CSCCSCEEEEEECSS-S--------EEEEEEEETTEEEEEEEETTTCCEE----
T ss_pred EEEEEEcCEEEEEcCCCCc---eEE-ccCCCcceEEeeeEc-C--------CCeEEEEECCCceEEEEECCCCCce----
Confidence 7776668888766554322 111 222222145555554 3 36777777777888 8887654321
Q ss_pred eeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecC
Q 003208 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (839)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 591 (839)
.+ . .+...+.. .+++|||++|++++.++.|++||+.++.. ......|...+.+++||||
T Consensus 373 -~l--~-~~~~~~~~--~~~SpDG~~la~~~~~~~v~~~d~~tg~~---------------~~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 373 -KF--E-ENLGNVFA--MGVDRNGKFAVVANDRFEIMTVDLETGKP---------------TVIERSREAMITDFTISDN 431 (1045)
T ss_dssp -EC--C-CCCCSEEE--EEECTTSSEEEEEETTSEEEEEETTTCCE---------------EEEEECSSSCCCCEEECTT
T ss_pred -Ee--c-CCccceee--eEECCCCCEEEEECCCCeEEEEECCCCce---------------EEeccCCCCCccceEECCC
Confidence 11 1 12222222 57899999999999999999999987642 0112257778899999999
Q ss_pred CCEEEEecCCc----------cEEEEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCc
Q 003208 592 DEVLFCGDLRG----------NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD 661 (839)
Q Consensus 592 ~~~la~gs~dg----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~D 661 (839)
|++||+++.++ .|++||+.... .. .+. .|. ..+.++.|+ +|+++|+.++.+
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--------~~------~l~-~~~-~~~~~~~~s---pdG~~l~~~s~~ 492 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------IF------AAT-TEN-SHDYAPAFD---ADSKNLYYLSYR 492 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--------EE------ECS-CSS-SBEEEEEEC---TTSCEEEEEESC
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCc--------EE------Eee-CCC-cccCCceEc---CCCCEEEEEecc
Confidence 99999887654 89999988521 11 111 232 568889999 899999999999
Q ss_pred CcEEEEEEe
Q 003208 662 GCICYLEYD 670 (839)
Q Consensus 662 g~i~iw~~~ 670 (839)
+..+.|+..
T Consensus 493 ~~~~~~~~~ 501 (1045)
T 1k32_A 493 SLDPSPDRV 501 (1045)
T ss_dssp CCCCEECSS
T ss_pred cCCcCcchh
Confidence 999998754
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-26 Score=268.78 Aligned_cols=254 Identities=17% Similarity=0.179 Sum_probs=200.9
Q ss_pred ceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECC--CCeeeeEEeeecCceEEeEEecccccccCCC--ccceee
Q 003208 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGISCNFINCTEGSV--STRVTF 89 (839)
Q Consensus 15 ~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~--~~~~~~ 89 (839)
.|.++|++++|+ |+ ++++++|+ ||.|+|||+. +++.+..+..|.. +|.+++|+ |+ ++ .
T Consensus 7 gH~~~V~~l~~s--~d----g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s-------~~~~~~---~ 69 (753)
T 3jro_A 7 AHNELIHDAVLD--YY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWA-------HPKFGT---I 69 (753)
T ss_dssp -CCCCEEEECCC--SS----SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEEC-------CTTSCS---E
T ss_pred cCcceeEEEEEC--CC----CCeEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEec-------CCCCCC---E
Confidence 388999999999 99 77888877 9999999998 5567777777655 79999999 54 53 6
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC--CcEEEEEeCCCcEEEEecCCC
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~--~~~las~~~d~~i~vwd~~~~ 167 (839)
+++++.|+.|++||+.... ...+..+.+|...|++++|+| + +.++++|+.||.|++||+.++
T Consensus 70 l~s~s~Dg~I~vwd~~~~~-------------~~~~~~~~~h~~~V~~v~~sp---~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp EEEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCSS
T ss_pred EEEEeCCCeEEEEECCCCc-------------ccccccccCCCCCeEEEEECC---CCCCCEEEEEeCCCcEEEEEeecC
Confidence 6666779999999998643 457788889999999999999 8 899999999999999999876
Q ss_pred ce--EEEEecCCceeEEEEeeccC----------CccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 168 SI--ILEVHSPERCLLYSMKLWGD----------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 168 ~~--~~~~~~~~~~~~~s~~~~~~----------~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
.. ...+..+. ..+.++.+... .+++.++++|+.||.|++||++.+.
T Consensus 134 ~~~~~~~~~~~~-~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------------------- 191 (753)
T 3jro_A 134 GTTSPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------------- 191 (753)
T ss_dssp SCCCCEEEECCS-SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT---------------------
T ss_pred CCcceeEeecCC-CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc---------------------
Confidence 32 23333333 34556666311 1168899999999999999998211
Q ss_pred eeEeecccccceeeEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
........+.+|.+.|.+++|+|+ +++|++++.||.|++||+...... ..........|...|+
T Consensus 192 --------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~v~ 258 (753)
T 3jro_A 192 --------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-----WKKTLLKEEKFPDVLW 258 (753)
T ss_dssp --------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC-----CBCCBSSSSCCSSCCC
T ss_pred --------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc-----ceeEEeccCCCCCceE
Confidence 022566778899999999999999 899999999999999999886431 1111124456889999
Q ss_pred EeEEC--CCEEEEEeCCCeEEEEcCC
Q 003208 313 DCCLT--DSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 313 ~~~~~--~~~l~s~~~dg~i~vw~~~ 336 (839)
+++|+ +.++++++.||.|++|++.
T Consensus 259 ~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 259 RASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 99998 6799999999999999993
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=8.4e-26 Score=244.77 Aligned_cols=258 Identities=10% Similarity=0.147 Sum_probs=201.7
Q ss_pred CCCcCccccccCCC-----------ceeeeeeEEEEecCC-CCCCCcceEEEee-CCeeEEEECCCC-------eeeeEE
Q 003208 1 MGKKDLSEWRLDVG-----------QYLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPF 60 (839)
Q Consensus 1 ~~d~~i~~w~~~~~-----------~~~~~Vt~l~f~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~~-------~~~~~~ 60 (839)
+.||+|++|++... .|.++|++++|+ | + +.+|++|+ |+.|+|||+.++ +.+..+
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC--PHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC--TTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC--CCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence 46899999998552 178899999999 9 6 78888888 899999999988 567777
Q ss_pred eeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec--cCCCcceEEE
Q 003208 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDV 138 (839)
Q Consensus 61 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~~ 138 (839)
..|.. .|.+++|+ |++++ .+++++.|+.|++||+.. .+.+..+ .+|.+.|+++
T Consensus 128 ~~h~~-~v~~~~~~-------p~~~~--~l~s~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 128 EGHTK-RVGIVAWH-------PTAQN--VLLSAGCDNVILVWDVGT---------------GAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp ECCSS-CEEEEEEC-------SSBTT--EEEEEETTSCEEEEETTT---------------TEEEEEECTTTCCSCEEEE
T ss_pred cCCCC-eEEEEEEC-------cCCCC--EEEEEcCCCEEEEEECCC---------------CCccEEEecCCCCCceEEE
Confidence 76655 79999999 77621 456667799999999975 4566777 7899999999
Q ss_pred EEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE-ecCCceeEEEEeeccCCccceEEEEe---ecCCeEEEEEeeccc
Q 003208 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEH 214 (839)
Q Consensus 139 ~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~l~sg---~~dg~i~vw~~~~~~ 214 (839)
+|+| ++.+|++++.|+.|++||+.+++.+..+ ..+....+..+.+ ++++.+|++| +.|+.|++||+.
T Consensus 183 ~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~~~~d~~i~iwd~~--- 253 (402)
T 2aq5_A 183 DWSR---DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF---VSEGKILTTGFSRMSERQVALWDTK--- 253 (402)
T ss_dssp EECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE---CSTTEEEEEEECTTCCEEEEEEETT---
T ss_pred EECC---CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE---cCCCcEEEEeccCCCCceEEEEcCc---
Confidence 9999 9999999999999999999999998888 4554433445555 5789999999 799999999987
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccce-eeEEE-ecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcccCccC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRL-VGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWK 291 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~h~~~V~~l~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~ 291 (839)
... ++... ..|...|.+++|+|++++|++ ++.|+.|++||+.+.+..
T Consensus 254 ------------------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 254 ------------------------------HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp ------------------------------BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred ------------------------------cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 222 12222 257788999999999999865 557999999999886531
Q ss_pred CCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~ 335 (839)
...+ ....|...|.+++|+++..+.++.++.+++|++
T Consensus 304 ----~~~l---~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l 340 (402)
T 2aq5_A 304 ----LHYL---SMFSSKESQRGMGYMPKRGLEVNKCEIARFYKL 340 (402)
T ss_dssp ----EEEE---EEECCSSCCSEEEECCGGGSCGGGTEEEEEEEE
T ss_pred ----eEee---cccccCCcccceEEecccccceecceeEEEEEc
Confidence 1211 222366899999999532223346779999998
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=4.8e-25 Score=237.34 Aligned_cols=306 Identities=13% Similarity=0.137 Sum_probs=193.6
Q ss_pred CcceEEEeeCCeeEEEECCC-------CeeeeEEe-eecCceEEeEEeccccc-------------ccCCCccceeeEEE
Q 003208 34 SLPFLLAGSGSQVLLYDLEA-------GTLIRPFQ-VFHGIRLHGISCNFINC-------------TEGSVSTRVTFEVA 92 (839)
Q Consensus 34 ~~~~l~~g~~~~v~iwd~~~-------~~~~~~~~-~~~~~~v~~i~~~~~~~-------------~~~~~~~~~~~~l~ 92 (839)
...++++|.++.|++|+... +.....+. .....++..+.+++... ...+++ .+++
T Consensus 30 ~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~la 105 (393)
T 4gq1_A 30 CSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYS----LFLA 105 (393)
T ss_dssp GTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEE----EEEE
T ss_pred CCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCC----CEEE
Confidence 45688888899999998532 11112111 22334566666654310 011232 3444
Q ss_pred -EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc-----CCCcEEEEEeCCCcEEEEecCC
Q 003208 93 -LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 93 -~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-----~~~~~las~~~d~~i~vwd~~~ 166 (839)
++.|++|+|||..... ......+..+.+|.++|++++|+|.. .++++||+|+.|++|+|||+.+
T Consensus 106 s~~~d~~v~lw~~~~~~----------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNET----------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp EEETTSCEEEEEEETTE----------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred EEeCCCcEEEEECCCCc----------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 4569999999998643 00123456789999999999999732 2678999999999999999988
Q ss_pred CceEEEEecCCceeEEEEeeccCCccc-eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (839)
+..+..+..+... +.++.| .|++ .+|++|+.|+.|++||+..++........ .............. .
T Consensus 176 ~~~~~~~~~~~~~-v~~v~~---~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~------~~~~~~~~~s~~~~--~ 243 (393)
T 4gq1_A 176 EGPILAGYPLSSP-GISVQF---RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT------ELVKNPWLLTLNTL--P 243 (393)
T ss_dssp TEEEEEEEECSSC-EEEEEE---ETTEEEEEEEEETTSEEEEEETTCCC----------------CSCCCSEEEESG--G
T ss_pred CceeeeecCCCCC-cEEEEE---CCCCCceEEecCCCCEEEEEECCCCccccccccc------CCcccceEEecccc--c
Confidence 8877766655443 556776 3555 58999999999999999854332211100 00000001111100 1
Q ss_pred ceeeEEEecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccce-------------
Q 003208 246 AVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV------------- 311 (839)
Q Consensus 246 ~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v------------- 311 (839)
........+|...|.++.|+ |+++.|++++.|+++++||+...... . .+..|...+
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-----~-----~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-----N-----EISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------------CCSCSEEEEC
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-----c-----eEeeecCccccEEEcccccccc
Confidence 11223346899999999987 79999999999999999999876542 1 111222111
Q ss_pred -----EEeEEC---C-CEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 312 -----WDCCLT---D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 312 -----~~~~~~---~-~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
....|. + .++++|+.||.|++||. +++.+..+..|.. +|.+++|+|+|++||+++.|| +.+|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 122233 2 36778889999999999 7888888888887 799999999999999998775 666665
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.9e-24 Score=236.77 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=214.7
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEee----ecCceEEeEEecccccccCCCccceeeEEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~ 92 (839)
..+.+++|+ |+ +.+++++. ++.|++||..+++.+..+.. .+...|.+++|+ ++++ .+++
T Consensus 123 ~~~~~~~~s--~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~---~~~s 186 (433)
T 3bws_A 123 FQPKSVRFI--DN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-------EHNE---LWVS 186 (433)
T ss_dssp SCBCCCEES--SS----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-------GGTE---EEEE
T ss_pred CCceEEEEe--CC----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-------CCCE---EEEE
Confidence 346799999 87 77888877 78999999999988764332 233479999998 7772 3444
Q ss_pred EEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCCCceEE
Q 003208 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 93 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~~~~~~ 171 (839)
.+.++.|++||+.. .+.+..+..|...+.+++|+| +++.++ +++.|+.|++||+.+++.+.
T Consensus 187 ~~~d~~v~~~d~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 187 QMQANAVHVFDLKT---------------LAYKATVDLTGKWSKILLYDP---IRDLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EGGGTEEEEEETTT---------------CCEEEEEECSSSSEEEEEEET---TTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ECCCCEEEEEECCC---------------ceEEEEEcCCCCCeeEEEEcC---CCCEEEEEecCCCcEEEEECCCCcEEE
Confidence 45589999999875 456667778999999999999 888775 55579999999999998887
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEee--------cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGT--------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~--------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
.+..+.. +..+.+ ++++.++++++ .|+.|++||+.
T Consensus 249 ~~~~~~~--~~~~~~---~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-------------------------------- 291 (433)
T 3bws_A 249 KTDKIGL--PRGLLL---SKDGKELYIAQFSASNQESGGGRLGIYSMD-------------------------------- 291 (433)
T ss_dssp ECCCCSE--EEEEEE---CTTSSEEEEEEEESCTTCSCCEEEEEEETT--------------------------------
T ss_pred EecCCCC--ceEEEE---cCCCCEEEEEECCCCccccCCCeEEEEECC--------------------------------
Confidence 7765433 455555 68888888887 48899999987
Q ss_pred ccceeeEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCE
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~ 320 (839)
..+.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+.+. . ....+...+.+++|+ +++
T Consensus 292 -~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-----~------~~~~~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 292 -KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-----Q------KSIPVFDKPNTIALSPDGKY 358 (433)
T ss_dssp -TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-----E------EEEECSSSEEEEEECTTSSE
T ss_pred -CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-----E------EEecCCCCCCeEEEcCCCCE
Confidence 44444433 466789999999999755 6668999999999987654 1 233467789999998 567
Q ss_pred EEEEeC---------------CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeC-CCcEEEEecC
Q 003208 321 IITAGE---------------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (839)
Q Consensus 321 l~s~~~---------------dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~-dg~i~iw~~~ 378 (839)
+++++. ||.|++||. +++.+..+..+. .+.+++|+|++++|++++. |+.|++|+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 887776 579999999 778887777643 5899999999999988875 9999999985
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=5e-24 Score=225.91 Aligned_cols=313 Identities=14% Similarity=0.097 Sum_probs=197.9
Q ss_pred EEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEe
Q 003208 48 LYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (839)
Q Consensus 48 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (839)
||++.+.+.+.+...|.. .|.+++|+ ||| .+++++++..++||++.. .+....
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs-------~dg----~~la~g~~~~~~iw~~~~---------------~~~~~~ 55 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFN-------QDQ----SCLILSTLKSFEIYNVHP---------------VAHIMS 55 (355)
T ss_dssp ----------------CC-CCCEEEEC-------TTS----SEEEEECSSEEEEEEETT---------------EEEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEEC-------CCC----CEEEEEcCCEEEEEecCC---------------cceeee
Confidence 566677777766666554 79999999 998 678888877899999874 233332
Q ss_pred ccCCCcceEEEEEeeccCCCcEE-EEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEE
Q 003208 128 LPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (839)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~l-as~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~ 206 (839)
... ..+..+++.+ +++.+ ++++.|++|++||..+++.+..+..+. .+.++.+ +++ .++++ .++.|+
T Consensus 56 ~~~--~~~~~~~~~~---~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~--~v~~v~~---~~~--~~~~~-~~~~i~ 122 (355)
T 3vu4_A 56 QEM--RHLSKVRMLH---RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA--PVKDLFL---SRE--FIVVS-YGDVIS 122 (355)
T ss_dssp EEC--SCCCEEEECT---TSSEEEEECSSTTEEEEEETTTTEEEEEEECSS--CEEEEEE---CSS--EEEEE-ETTEEE
T ss_pred eec--CCeEEEEEcC---CCCEEEEEECCccEEEEEECCCCcEEEEEECCC--ceEEEEE---cCC--EEEEE-EcCEEE
Confidence 221 2477888888 77776 567778999999999999988887443 3556655 333 33333 478999
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc-eeeEEEecCCCCeEEEEEcCCCCEEEE--EeCCCcEEEE
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIW 283 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s--~s~d~~i~iw 283 (839)
+||+. .. +.+..+.. ....+++++ ..++. ++.||.|++|
T Consensus 123 i~d~~---------------------------------~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 123 VFKFG---------------------------------NPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHIT 164 (355)
T ss_dssp EEESS---------------------------------TTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEE
T ss_pred EEECC---------------------------------CCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEE
Confidence 99998 22 23333332 333455666 56666 5899999999
Q ss_pred EcccCccCCCC-------Ccee-eeceEeeccccceEEeEEC--CCEEEEEeCCCe-EEEEcC-CCceEEEee-c-ccCC
Q 003208 284 EVRAEYWKDSD-------SIEE-VGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIK-E-HIGR 349 (839)
Q Consensus 284 d~~~~~~~~~~-------~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~-i~vw~~-~~~~~~~~~-~-h~~~ 349 (839)
|+.+....... ..++ + ..+.+|...|.+++|+ +.+|++|+.|++ |++||+ +++++..+. + |..
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~--~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~- 241 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKG--VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA- 241 (355)
T ss_dssp ECCC------------------CC--EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-
T ss_pred ECCCCCccccccccccccccCccc--EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-
Confidence 99875410000 0011 1 3788999999999998 689999999998 999999 789999998 5 777
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCcCcc---CcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEE
Q 003208 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG---SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 426 (839)
.|.+++|+|++++|++++.|++|++||++..... .+........+...-.......+ .........++
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~a 312 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS---------VDKHVRGCKIA 312 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC---------CCTTCCCCEEE
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec---------cCCCCCceEEE
Confidence 7999999999999999999999999999543211 11110000000000000011111 11122346789
Q ss_pred EecCCe-EEEEeccceEEEEEecCC
Q 003208 427 LTSEDT-LYIATNHGYLYHTKLCDM 450 (839)
Q Consensus 427 ~~~~~~-~~~~~~~g~i~~~~~~~~ 450 (839)
|++++. +++++.+|.+..|.+...
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 999984 556667888877766543
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-25 Score=258.75 Aligned_cols=253 Identities=17% Similarity=0.229 Sum_probs=201.6
Q ss_pred eEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEE
Q 003208 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (839)
Q Consensus 58 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 137 (839)
..+..|.+ +|++++|+ |+++ .+++++.|+.|+||++.... .+.+..+.+|.+.|++
T Consensus 3 ~~l~gH~~-~V~~l~~s-------~dg~---~latg~~dg~I~vwd~~~~~-------------~~~~~~l~~h~~~V~~ 58 (753)
T 3jro_A 3 VIANAHNE-LIHDAVLD-------YYGK---RLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWR 58 (753)
T ss_dssp -----CCC-CEEEECCC-------SSSC---CEEEEETTTEEEEEEEETTE-------------EEEEEEECCCSSCEEE
T ss_pred eecccCcc-eeEEEEEC-------CCCC---eEEEEECCCcEEEEecCCCC-------------CccceeccCCcCceEE
Confidence 34555555 79999999 8874 56666679999999998433 6778889999999999
Q ss_pred EEEeeccCC--CcEEEEEeCCCcEEEEecCCCc--eEEEEecCCceeEEEEeeccCCcc--ceEEEEeecCCeEEEEEee
Q 003208 138 VCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 138 ~~~~~~~~~--~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~--~~~l~sg~~dg~i~vw~~~ 211 (839)
++|+| + +++|++|+.||.|++||+.+++ .+..+..+. ..+.++.+ +++ +.++++|+.||.|++||+.
T Consensus 59 l~~s~---~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-~~V~~v~~---sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 59 VDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEECC---TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEecC---CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-CCeEEEEE---CCCCCCCEEEEEeCCCcEEEEEee
Confidence 99998 6 8999999999999999999886 445554443 34667776 566 8899999999999999998
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC-------------CCCEEEEEeCCC
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSVSDDR 278 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-------------~~~~l~s~s~d~ 278 (839)
.+ .......+.+|...|.+++|+| ++..+++++.||
T Consensus 132 ~~-------------------------------~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 132 EN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp SS-------------------------------SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred cC-------------------------------CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 21 1233456788999999999999 589999999999
Q ss_pred cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEEEeCCCeEEEEcC-CCc-----eEEEeeccc
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGK-----QLKMIKEHI 347 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~~~dg~i~vw~~-~~~-----~~~~~~~h~ 347 (839)
.|++||++..... .... ..+.+|...|.+++|++ .++++++.||.|++||+ .++ .+.....|.
T Consensus 181 ~I~iwd~~~~~~~----~~~~--~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 181 LVKIWKYNSDAQT----YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp CEEEEEEETTTTE----EEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred eEEEEeccCCccc----ceee--eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 9999999876431 1222 36778999999999983 58999999999999999 432 333334466
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 348 ~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
. .|++++|+|++.++++|+.||.|++|+++.
T Consensus 255 ~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 255 D-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp S-CCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred C-ceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 6 699999999999999999999999999863
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-25 Score=233.28 Aligned_cols=272 Identities=8% Similarity=-0.041 Sum_probs=197.7
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+.++++|+ |+.|++||+.+++.+.++.. ..|.++.++ | .+++++.|++|++|+...... .
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~~-------~------~~~s~s~D~~i~~w~~~~~~~---~ 108 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGEH-------P------AIISRGPCNRLLLLYPGNQIT---I 108 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCCC-------C------SEEEECSTTEEEEEETTTEEE---E
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeeeC-------C------ceEEecCCCeEEEEEccCceE---E
Confidence 67788877 99999999999998888872 257778887 4 356666789999998652100 0
Q ss_pred CCCccccceeeeE-eccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 114 YQPETCVNLSLVQ-SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
+.. ...+.+. ...+|.+.|.+++|+|. .+++++++|+.|++|++||+.+++.+.....+....+.++.+ +|+
T Consensus 109 ~~~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~---~pd 181 (343)
T 3lrv_A 109 LDS---KTNKVLREIEVDSANEIIYMYGHNE-VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL---HKD 181 (343)
T ss_dssp EET---TTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE---CTT
T ss_pred eec---CCcceeEEeecCCCCCEEEEEcCCC-CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE---CCC
Confidence 000 0022222 33478889999999872 156799999999999999999998876665554444666666 689
Q ss_pred ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee-EEEec-CCCCeEEEEEcCCCCE
Q 003208 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVG-HEGSIFRIEWSSCGSK 270 (839)
Q Consensus 193 ~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-h~~~V~~l~~~~~~~~ 270 (839)
+.+|++|+.||.|++||++ ..+.. ..+.+ |.+.|.+++|+|++.+
T Consensus 182 g~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLS---------------------------------SPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp SCEEEEECTTSCEEEEESS---------------------------------CTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCEEEEEECC---------------------------------CCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 9999999999999999998 45544 66777 9999999999999999
Q ss_pred EEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccce--EEeEEC--CCEEEEEeC-CCeEEEEcC-CCceEEEee
Q 003208 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV--WDCCLT--DSFIITAGE-DCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 271 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~--~~~l~s~~~-dg~i~vw~~-~~~~~~~~~ 344 (839)
|++++.+ .|++||+++... ...+. .+..|...+ .+++|+ +.+|++++. |+.+++|++ ........
T Consensus 229 l~s~~~~-~v~iwd~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 229 MVVECDQ-TVVCFDLRKDVG-----TLAYP--TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp EEEEESS-BEEEEETTSSTT-----CBSSC--CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EEEEeCC-eEEEEEcCCCCc-----ceeec--ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 9999955 999999998765 22111 112233333 368898 689999988 999999998 33322222
Q ss_pred cccCCceEEEEEcc---CCCEEEEEeCCCcEEEEecC
Q 003208 345 EHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 345 ~h~~~~i~~~~~~~---~~~~l~t~~~dg~i~iw~~~ 378 (839)
. ++..++|.+ +...+++++.||.+.++-..
T Consensus 300 ---~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 300 ---D-EESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---E-EEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---c-CceeEecCccccccceeEEEecCCceEEEEec
Confidence 2 577888888 88899999999999988653
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=4.7e-23 Score=222.41 Aligned_cols=262 Identities=12% Similarity=0.048 Sum_probs=207.4
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~ 112 (839)
+.+++++. ++.|++||+.+++.+..+..+. .+.+++|+ |+++ .+++++ .++.|++||+..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s-------~dg~---~l~~~~~~d~~i~v~d~~~------ 63 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVIS-------PDGT---KVYVANAHSNDVSIIDTAT------ 63 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEEC-------TTSS---EEEEEEGGGTEEEEEETTT------
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEEC-------CCCC---EEEEECCCCCeEEEEECCC------
Confidence 34666666 8999999999999998888654 48999999 8883 444444 689999999875
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE-EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL 191 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 191 (839)
++.+..+..+. .+.+++|+| ++++|+. ++.++.|++||+.+++.+..+..+.. ..++.+ ++
T Consensus 64 ---------~~~~~~~~~~~-~v~~~~~sp---dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~---s~ 125 (391)
T 1l0q_A 64 ---------NNVIATVPAGS-SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--PLGLAL---SP 125 (391)
T ss_dssp ---------TEEEEEEECSS-SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEE---CT
T ss_pred ---------CeEEEEEECCC-CccceEECC---CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC--cceEEE---CC
Confidence 44556665554 899999999 9987754 55679999999999998887765543 355555 57
Q ss_pred cceEE-EEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 192 EALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 192 ~~~~l-~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
++..+ ++++.++.|++||+. ..+.+..+..| ..+.+++|+|++++
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTV---------------------------------TKAVINTVSVG-RSPKGIAVTPDGTK 171 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETT---------------------------------TTEEEEEEECC-SSEEEEEECTTSSE
T ss_pred CCCEEEEEeCCCCEEEEEECC---------------------------------CCcEEEEEecC-CCcceEEECCCCCE
Confidence 78766 788889999999988 56666666655 55799999999988
Q ss_pred E-EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEe---CCCeEEEEcC-CCceEEEe
Q 003208 271 L-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG---EDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 271 l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~---~dg~i~vw~~-~~~~~~~~ 343 (839)
+ ++++.|+.|++||+++.+. . ....+...+.+++|+ ++++++++ .++.|++||+ .++.+..+
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~-----~------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSV-----I------DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE-----E------EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeE-----E------EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 7 6778899999999988654 1 333456678999998 56788777 6899999999 77888888
Q ss_pred ecccCCceEEEEEccCCCEE-EEEeCCCcEEEEecCC
Q 003208 344 KEHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (839)
Q Consensus 344 ~~h~~~~i~~~~~~~~~~~l-~t~~~dg~i~iw~~~~ 379 (839)
..+.. +.+++|+|+++++ ++++.|+.|++||+..
T Consensus 241 ~~~~~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 241 PVGPD--PAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp ECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ecCCC--ccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 77654 7899999999877 6778899999999954
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=3.4e-24 Score=233.94 Aligned_cols=258 Identities=18% Similarity=0.283 Sum_probs=197.2
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCC----------CeeeeEEeeecCceEEeEEecccccccCCCc
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------GTLIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~----------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 84 (839)
|.++|++++|+ |+ ++.+++++. +|.|+|||+.+ .+.+..+..|.. .|.+++|+ |++
T Consensus 127 h~~~v~~l~~~--p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~-------~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYM--PQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWN-------PNL 193 (430)
T ss_dssp ESSCCSEEEEE--TT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEEC-------TTS
T ss_pred CCCcEEEEEEC--CC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeC-------CCC
Confidence 78899999999 86 356888877 89999999986 567777777655 69999999 665
Q ss_pred cceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 85 ~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
+. .+++++.|+.|++|++...... .........+.+|...|.+++|+| .++.+|++++.|+.|++||+
T Consensus 194 ~~--~l~s~~~dg~i~vwd~~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 194 NG--YLLSASDDHTICLWDINATPKE--------HRVIDAKNIFTGHTAVVEDVAWHL--LHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp TT--EEEEECTTSCEEEEETTSCCBG--------GGEEECSEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEET
T ss_pred CC--eEEEEeCCCeEEEEeCCCCCCC--------CceeccceeecCCCCCEeeeEEeC--CCCCEEEEEeCCCeEEEEEC
Confidence 20 3444456899999999753200 001233566779999999999998 24678999999999999999
Q ss_pred CCC---ceEEEEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEee
Q 003208 165 SNS---SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (839)
Q Consensus 165 ~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (839)
+++ +.+..+..+. ..+.++.+ ++++. ++++|+.||.|++||++.
T Consensus 262 ~~~~~~~~~~~~~~~~-~~v~~i~~---~p~~~~~l~tg~~dg~v~vwd~~~---------------------------- 309 (430)
T 2xyi_A 262 RNNNTSKPSHTVDAHT-AEVNCLSF---NPYSEFILATGSADKTVALWDLRN---------------------------- 309 (430)
T ss_dssp TCSCSSSCSEEEECCS-SCEEEEEE---CSSCTTEEEEEETTSEEEEEETTC----------------------------
T ss_pred CCCCCCcceeEeecCC-CCeEEEEe---CCCCCCEEEEEeCCCeEEEEeCCC----------------------------
Confidence 876 4556665443 33566666 46665 799999999999999981
Q ss_pred cccccceeeEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccCccCCC------CCceeeeceEeeccccceEE
Q 003208 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS------DSIEEVGSSVLYGHNARVWD 313 (839)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~ 313 (839)
...++..+.+|...|.+++|+|+++ .|++++.|+.|++||+........ ...+.+ ....+|...|.+
T Consensus 310 ----~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~ 383 (430)
T 2xyi_A 310 ----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL--FIHGGHTAKISD 383 (430)
T ss_dssp ----TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE--EECCCCSSCEEE
T ss_pred ----CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE--EEcCCCCCCceE
Confidence 2456788889999999999999985 699999999999999987322000 000111 366789999999
Q ss_pred eEEC--CC-EEEEEeCCCeEEEEcCC
Q 003208 314 CCLT--DS-FIITAGEDCTCRVWGSD 336 (839)
Q Consensus 314 ~~~~--~~-~l~s~~~dg~i~vw~~~ 336 (839)
++|+ +. ++++++.||.|++|++.
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEECCCCCCEEEEEECCCCEEEeEcc
Confidence 9999 34 89999999999999984
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=3.5e-24 Score=230.55 Aligned_cols=303 Identities=12% Similarity=0.066 Sum_probs=188.8
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeE-------------------e
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-------------------S 127 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 127 (839)
....+.|.. ..|++. .+++++.++.|++|+............ ....+. .
T Consensus 17 ~p~~~~w~~----~~~~~~---~l~a~g~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (393)
T 4gq1_A 17 RPYTTTWCS----QSPSCS---NLLAIGHDTGITIYCASEEQTPGSTGL-----TLQELFTIQTGLPTLHLSFSSSCSYS 84 (393)
T ss_dssp CEEEEEECT----TSGGGT---TEEEEEESSEEEEEEEEECCSSSCCSE-----EEEEEEEEECSSCEEEEEECTTCEEE
T ss_pred CCeEEEEeC----CCCCCC---CEEEEECCCCEEEEECCCCCccccccc-----ceeeeEEEecCCCeeeEeecCCcccc
Confidence 355666641 114432 678888899999998865432111100 011111 1
Q ss_pred ccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE-----EecCCceeEEEEeecc-----CCccceEEE
Q 003208 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-----VHSPERCLLYSMKLWG-----DNLEALRIA 197 (839)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~s~~~~~-----~~~~~~~l~ 197 (839)
...|...+....+.+ ++.+||+|+.|++|++||..+++.... +.+| ...+.++.|.. ...++.+||
T Consensus 85 ~~~~~~~~~~~~~~~---~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~la 160 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPV---YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAEQVIA 160 (393)
T ss_dssp CC----------CCE---EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEEEEEE
T ss_pred ccccCCCcceeecCC---CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCCCEEE
Confidence 112333333333334 667899999999999999998866432 1233 34566777632 223789999
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCC-CEEEEEeC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSD 276 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~ 276 (839)
+|+.|++|+|||+. ...++..+.+|...|.+++|+|++ .+|++++.
T Consensus 161 s~s~D~tv~~Wd~~---------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 161 SVGDDCTLIIWRLT---------------------------------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 207 (393)
T ss_dssp EEETTSEEEEEEEE---------------------------------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred EEECCCeEEEEECC---------------------------------CCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence 99999999999998 666777788899999999999987 47999999
Q ss_pred CCcEEEEEcccCccCCCCC----------cee-----eeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcC-CC
Q 003208 277 DRSARIWEVRAEYWKDSDS----------IEE-----VGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DG 337 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~----------~~~-----~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~-~~ 337 (839)
|++|++||++++....... ... .......+|...+.++.|. +..+++++.|+++++||+ .+
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 9999999998765421000 000 0001345788889999986 689999999999999999 55
Q ss_pred ceEEEeecccCCceEEE------------------EEcc--CCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCC
Q 003208 338 KQLKMIKEHIGRGIWRC------------------LYDS--LSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNG 396 (839)
Q Consensus 338 ~~~~~~~~h~~~~i~~~------------------~~~~--~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~ 396 (839)
+....+..|.. .+..+ .++| ++.++++|+.||.|++||+... ....
T Consensus 288 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~------------ 354 (393)
T 4gq1_A 288 NDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI------------ 354 (393)
T ss_dssp -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE------------
T ss_pred CCCceEeeecC-ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE------------
Confidence 55555544433 23322 2332 3346778889999999998542 1111
Q ss_pred CcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecC
Q 003208 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (839)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~ 449 (839)
...+..+|++++|+|+|++|+++.++.+.++++..
T Consensus 355 ------------------~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 355 ------------------PIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp ------------------EEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred ------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 11234579999999999998888888888777654
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.9e-24 Score=222.91 Aligned_cols=273 Identities=11% Similarity=0.040 Sum_probs=194.1
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
++.+|++|+.|+.|++||+.+++.+..+.. ..+.++.+ .+. +++++.|+.|++|+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~---~~~---~~s~s~D~~i~~w~~~-------------- 103 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGE---HPA---IISRGPCNRLLLLYPG-------------- 103 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCC---CCS---EEEECSTTEEEEEETT--------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeee---CCc---eEEecCCCeEEEEEcc--------------
Confidence 778999999999999999999988877761 22333333 343 9999999999999976
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeece
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 302 (839)
..+.+|+.. ..+.+..+. +|.+.|.+++|+| +++++++++.|++|++||++++.. .. .
T Consensus 104 ---------~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~----~ 164 (343)
T 3lrv_A 104 ---------NQITILDSK-TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YI----V 164 (343)
T ss_dssp ---------TEEEEEETT-TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EE----E
T ss_pred ---------CceEEeecC-CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EE----E
Confidence 234444443 333344443 7889999999999 999999999999999999988654 21 1
Q ss_pred EeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceE-EEeec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQL-KMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 303 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~-~~~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
....|...|.+++|+ +.++++|+.||.|++||+ +++.+ ..+.. |.. +|.+++|+|++.+|++++ |+.|++||+
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 223456679999998 689999999999999999 66766 77887 887 799999999999999999 559999999
Q ss_pred CC-cCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcce--EEEEEecCCeEEEE-ec-cceEEEEEecCCCC
Q 003208 378 QA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV--RCLHLTSEDTLYIA-TN-HGYLYHTKLCDMDS 452 (839)
Q Consensus 378 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~-~g~i~~~~~~~~~~ 452 (839)
+. .....+.... .+...+ .+++|+|++.++++ +. ++.+..|++... .
T Consensus 243 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-~ 294 (343)
T 3lrv_A 243 RKDVGTLAYPTYT---------------------------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK-T 294 (343)
T ss_dssp TSSTTCBSSCCCB---------------------------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-T
T ss_pred CCCCcceeecccc---------------------------cccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-c
Confidence 65 2222222110 000111 57999999977766 33 788877776433 2
Q ss_pred ceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEc
Q 003208 453 VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (839)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~ 502 (839)
..|.. .++.++.+.+.. .+...+++++.||.+.++-..
T Consensus 295 ~~~~~-------~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 295 KNWTK-------DEESALCLQSDT-----ADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CSEEE-------EEEEECCC---------CCCCEEEEEEETTEEEEEEEC
T ss_pred cceEe-------cCceeEecCccc-----cccceeEEEecCCceEEEEec
Confidence 33543 233444443311 234678888889999887543
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=8.5e-23 Score=220.37 Aligned_cols=261 Identities=8% Similarity=0.029 Sum_probs=202.4
Q ss_pred CCCcCccccccCCCc------eeeeeeEEEEecCCCCCCCcceE-EEee-CCeeEEEECCCCeeeeEEeeecCceEEeEE
Q 003208 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l-~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 72 (839)
+.|++|++||+.+++ +...+.+++|+ |+ ++++ +++. ++.|++||+.+++.+..+..+. .+.+++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~ 80 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVA 80 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEeecCCCcceEEEC--CC----CCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceE
Confidence 468999999999876 22458899999 99 6655 5554 8999999999999998888654 699999
Q ss_pred ecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEE-
Q 003208 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL- 150 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l- 150 (839)
|+ |+++ .++++. .++.|++||+.. .+.+..+..| ..+.+++|+| +++.|
T Consensus 81 ~s-------pdg~---~l~~~~~~~~~v~v~d~~~---------------~~~~~~~~~~-~~~~~~~~s~---dg~~l~ 131 (391)
T 1l0q_A 81 VS-------PDGK---QVYVTNMASSTLSVIDTTS---------------NTVAGTVKTG-KSPLGLALSP---DGKKLY 131 (391)
T ss_dssp EC-------TTSS---EEEEEETTTTEEEEEETTT---------------TEEEEEEECS-SSEEEEEECT---TSSEEE
T ss_pred EC-------CCCC---EEEEEECCCCEEEEEECCC---------------CeEEEEEeCC-CCcceEEECC---CCCEEE
Confidence 99 8874 444444 369999999975 3445555544 4689999999 99877
Q ss_pred EEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEE-EEeecCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 151 as~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l-~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
++++.++.|++||+.+++.+..+..+.. ...+.+ ++++..| ++++.++.|++||+.
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~---~~dg~~l~~~~~~~~~v~~~d~~------------------ 188 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAV---TPDGTKVYVANFDSMSISVIDTV------------------ 188 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEE---CTTSSEEEEEETTTTEEEEEETT------------------
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCC--cceEEE---CCCCCEEEEEeCCCCEEEEEECC------------------
Confidence 6888899999999999998888775543 244554 5777766 677889999999998
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcccCccCCCCCceeeeceEeec
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (839)
..+....+. |...+.+++|+|++++|++++ .++.|++||+.+.+. .. .+..
T Consensus 189 ---------------~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-----~~-----~~~~ 242 (391)
T 1l0q_A 189 ---------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-----TA-----RIPV 242 (391)
T ss_dssp ---------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-----EE-----EEEC
T ss_pred ---------------CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-----EE-----EEec
Confidence 555555554 567899999999999999888 689999999987654 22 3334
Q ss_pred cccceEEeEEC--CCEE-EEEeCCCeEEEEcC-CCceEEEeecccC
Q 003208 307 HNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (839)
Q Consensus 307 h~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~-~~~~~~~~~~h~~ 348 (839)
| ..+.+++|+ ++++ ++++.|+.|++||+ +++.+..+..+..
T Consensus 243 ~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 243 G-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred C-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 4 357889998 4566 67789999999999 7888877766544
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=2.8e-22 Score=219.61 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=213.7
Q ss_pred eeEEEECCCC--eeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccc
Q 003208 45 QVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVN 121 (839)
Q Consensus 45 ~v~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~ 121 (839)
.|.++|..++ +.+..+..+ ..+.+++|+ |++ .+++++ .++.|++||+....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~s-------~~~----~~~~~~~~~~~i~~~d~~~g~------------- 155 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG--FQPKSVRFI-------DNT----RLAIPLLEDEGMDVLDINSGQ------------- 155 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS--SCBCCCEES-------SSS----EEEEEBTTSSSEEEEETTTCC-------------
T ss_pred EEEEECCCCCcceEEEEEcCC--CCceEEEEe-------CCC----eEEEEeCCCCeEEEEECCCCe-------------
Confidence 3444444445 455555543 247799999 754 555554 47889999987532
Q ss_pred eeeeE-----eccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEE
Q 003208 122 LSLVQ-----SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (839)
Q Consensus 122 ~~~~~-----~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l 196 (839)
... .+.+|.+.|.+++|+| ++.++++++.|+.|++||+.+++.+..+..+.. .+.++.+ ++++..+
T Consensus 156 --~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l 226 (433)
T 3bws_A 156 --TVRLSPPEKYKKKLGFVETISIPE---HNELWVSQMQANAVHVFDLKTLAYKATVDLTGK-WSKILLY---DPIRDLV 226 (433)
T ss_dssp --EEEECCCHHHHTTCCEEEEEEEGG---GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS-SEEEEEE---ETTTTEE
T ss_pred --EeeecCcccccccCCceeEEEEcC---CCEEEEEECCCCEEEEEECCCceEEEEEcCCCC-CeeEEEE---cCCCCEE
Confidence 233 4568999999999998 999999999999999999999988888764432 2445555 4777766
Q ss_pred -EEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 197 -ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 197 -~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
++++.++.|++||+. ..+.+..+..+ ..+.+++|+|+++++++++
T Consensus 227 ~~~~~~~~~i~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~ 272 (433)
T 3bws_A 227 YCSNWISEDISVIDRK---------------------------------TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQ 272 (433)
T ss_dssp EEEETTTTEEEEEETT---------------------------------TTEEEEECCCC-SEEEEEEECTTSSEEEEEE
T ss_pred EEEecCCCcEEEEECC---------------------------------CCcEEEEecCC-CCceEEEEcCCCCEEEEEE
Confidence 455589999999998 55556555544 5699999999999999988
Q ss_pred --------CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEeCCCeEEEEcC-CCceEEEe
Q 003208 276 --------DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 276 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~-~~~~~~~~ 343 (839)
.|+.|++||+.+++. .....|...+.+++|+ ++ .+++++.|+.|++||+ +++.+..+
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDKEKL-----------IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp EESCTTCSCCEEEEEEETTTTEE-----------EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCccccCCCeEEEEECCCCcE-----------EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 588999999987654 2334566688899998 34 5577799999999999 67777666
Q ss_pred ecccCCceEEEEEccCCCEEEEEeC---------------CCcEEEEecCCc-CccCcCCCCcccccCCCcceEEeecCC
Q 003208 344 KEHIGRGIWRCLYDSLSSLLVTAGF---------------DSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPN 407 (839)
Q Consensus 344 ~~h~~~~i~~~~~~~~~~~l~t~~~---------------dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (839)
. +.. .+.+++|+|+++++++++. ||.|++||+... .+.. +.
T Consensus 342 ~-~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~------------------~~--- 398 (433)
T 3bws_A 342 P-VFD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF------------------WE--- 398 (433)
T ss_dssp E-CSS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE------------------EE---
T ss_pred c-CCC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE------------------ec---
Confidence 5 444 5899999999998888876 579999998542 1111 10
Q ss_pred CccceeeccCCCcceEEEEEecCCeEEE-Eec-cceEEEEEec
Q 003208 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATN-HGYLYHTKLC 448 (839)
Q Consensus 408 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~-~g~i~~~~~~ 448 (839)
. ...+.+++|+|++.+++ ++. ++.+..|++.
T Consensus 399 ---------~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 399 ---------A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ---------C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ---------C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 0 13589999999986655 443 8888877653
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=3.5e-23 Score=207.69 Aligned_cols=250 Identities=12% Similarity=0.126 Sum_probs=171.7
Q ss_pred CcCccccccCCCc----------eeeeeeEEEEecCCCCCCCcceEEEeeC----CeeEEEECC-C----CeeeeEEeee
Q 003208 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGSG----SQVLLYDLE-A----GTLIRPFQVF 63 (839)
Q Consensus 3 d~~i~~w~~~~~~----------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~----~~v~iwd~~-~----~~~~~~~~~~ 63 (839)
+.+|++|++.+.. |..||..|+|+ || ...++.+.-+ +.|+..-.. . ++.+. ...
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~--s~g 134 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPV--PD---VYNLVCVALGNLEIREIRALFCSSDDESEKQVLL--KSG 134 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCC--TT---CCSCEEEEECSSSEEEEEEECC------CCEEEE--EEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEc--Cc---ccceeeeeeccccccceEEEEECCCccccccEEE--eCC
Confidence 4678999999983 55689999999 87 2233333322 222222111 1 11111 111
Q ss_pred cCceEEeEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE
Q 003208 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (839)
Q Consensus 64 ~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (839)
+...|.++ +++ .++.+++ |+.|++|++... ++.+..+.+|...+..++|
T Consensus 135 ~~~~v~~l----------~~g----~lv~ss~~g~d~~V~~~~~s~d--------------G~~~~s~~~~~~~v~~l~f 186 (356)
T 2w18_A 135 NIKAVLGL----------TKR----RLVSSSGTLSDQQVEVMTFAED--------------GGGKENQFLMPPEETILTF 186 (356)
T ss_dssp EEEEEEEE----------TTT----EEEEEESSSTTCEEEEEEECTT--------------SCEEEEEEECCCSSCEEEE
T ss_pred CeEEEEec----------CCC----cEEEecccCCCCcEEEEEECCC--------------CceeeeeccCCCceeeEEe
Confidence 22223322 455 6777765 999999999642 4567778899999999999
Q ss_pred eeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCc--eeEEEEeeccCCccceEE------------EEeecCCeEE
Q 003208 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER--CLLYSMKLWGDNLEALRI------------ASGTIYNEII 206 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~l------------~sg~~dg~i~ 206 (839)
+|.+.++.+||+|+.|++|+|||+.++++++++..+.. ..+.++.| +|++.++ ++|+.|++|+
T Consensus 187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf---SpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY---SEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE---EETTEEEEEEC------------CCEEEE
T ss_pred eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE---CCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 98656789999999999999999999999999975432 12333344 5677765 5677788888
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~s~s~d~~i~ 281 (839)
+||+. +++.+..+ .+|.+.+.+..++ +..+++++.|++|+
T Consensus 264 lWd~~---------------------------------tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIk 308 (356)
T 2w18_A 264 VINPK---------------------------------TTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIA 308 (356)
T ss_dssp EEETT---------------------------------TTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEE
T ss_pred EEECC---------------------------------CCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEE
Confidence 88877 55555444 4777776655554 78999999999999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceE-EeEEC--CCEEEEEeCCCeEEEEcC
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVW-DCCLT--DSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~--~~~l~s~~~dg~i~vw~~ 335 (839)
|||+.+++. . .++.+|...+. +++|+ +++|++|+.|++|+|||+
T Consensus 309 IWDl~tGk~-----l-----~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 309 IWDLLLGQC-----T-----ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTTCSE-----E-----EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCcE-----E-----EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999876 2 26778887665 58999 579999999999999984
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=8.6e-22 Score=213.02 Aligned_cols=285 Identities=8% Similarity=0.050 Sum_probs=202.6
Q ss_pred eeeEEEEecCCCCCCCcceEEEee-----CC----eeEEEEC--CCCeeee--EEeeecCceEEeEEeccccc-------
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGS-----GS----QVLLYDL--EAGTLIR--PFQVFHGIRLHGISCNFINC------- 78 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~-----~~----~v~iwd~--~~~~~~~--~~~~~~~~~v~~i~~~~~~~------- 78 (839)
+|...+|. +. +..++++|. +| .+++||+ .+++.+. .+..+.. .+..+++++...
T Consensus 64 ~~~~~~w~--~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 64 EVQPAAWS--AL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ-WLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GCCHHHHH--TT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHH--hc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChh-HHHHHHHHHHHHHHHHHcC
Confidence 45556666 54 345776764 46 8999999 8998774 4665543 466666553100
Q ss_pred ccCCCccceeeEEEEEcC------cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEE
Q 003208 79 TEGSVSTRVTFEVALFGE------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (839)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las 152 (839)
..++.+. .++.++.+ +.|++||++. .....+.+|...|.+++|+| ++++||+
T Consensus 138 ~~~~~~~---~l~~~s~~~~~~~~~~i~i~d~~g----------------~~~~~l~~~~~~v~~~~~Sp---dg~~la~ 195 (415)
T 2hqs_A 138 IKGAFRT---RIAYVVQTNGGQFPYELRVSDYDG----------------YNQFVVHRSPQPLMSPAWSP---DGSKLAY 195 (415)
T ss_dssp SCCCTTC---EEEEEEECSSSSCCEEEEEEETTS----------------CSCEEEEEESSCEEEEEECT---TSSEEEE
T ss_pred CCCcCCC---EEEEEEecCCCCccceEEEEcCCC----------------CCCEEEeCCCCcceeeEEcC---CCCEEEE
Confidence 0011131 44444443 7999999863 23455667889999999999 9999999
Q ss_pred EeCCC---cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-EeecCCe--EEEEEeeccccccCCCCCCCcc
Q 003208 153 GCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNE--IIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 153 ~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~dg~--i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
++.++ .|++||+.+++... +..+. ..+.++.| +|++..|+ +++.++. |++||+.
T Consensus 196 ~s~~~~~~~i~~~d~~tg~~~~-l~~~~-~~~~~~~~---spdg~~la~~~~~~g~~~i~~~d~~--------------- 255 (415)
T 2hqs_A 196 VTFESGRSALVIQTLANGAVRQ-VASFP-RHNGAPAF---SPDGSKLAFALSKTGSLNLYVMDLA--------------- 255 (415)
T ss_dssp EECTTSSCEEEEEETTTCCEEE-EECCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETT---------------
T ss_pred EEecCCCcEEEEEECCCCcEEE-eecCC-CcccCEEE---cCCCCEEEEEEecCCCceEEEEECC---------------
Confidence 99875 99999999887754 33332 23556665 68998777 6666654 8888887
Q ss_pred CCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEcccCccCCCCCceeeeceE
Q 003208 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIWEVRAEYWKDSDSIEEVGSSV 303 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (839)
.++. ..+..|...+.+++|+|++++|++++. ++ .|++||+.++.. ..
T Consensus 256 ------------------~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----------~~ 305 (415)
T 2hqs_A 256 ------------------SGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----------QR 305 (415)
T ss_dssp ------------------TCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----------EE
T ss_pred ------------------CCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----------EE
Confidence 3333 466788899999999999999998886 44 677778877654 24
Q ss_pred eeccccceEEeEEC--CCEEEEEeCC---CeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCC---cEEEE
Q 003208 304 LYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS---AIKVH 375 (839)
Q Consensus 304 ~~~h~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg---~i~iw 375 (839)
+..+...+.+++|+ +++|++++.+ ..|++||+.+.....+..+. .+.+++|+|+|++|++++.++ .|.+|
T Consensus 306 l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 306 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 45566788899998 5788877764 58999999443345565554 589999999999999988877 79999
Q ss_pred ecCCcCcc
Q 003208 376 QFQAFLPG 383 (839)
Q Consensus 376 ~~~~~~~~ 383 (839)
|+++...+
T Consensus 384 d~~g~~~~ 391 (415)
T 2hqs_A 384 STDGRFKA 391 (415)
T ss_dssp ETTSCCEE
T ss_pred ECCCCcEE
Confidence 98764443
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=6.6e-20 Score=204.30 Aligned_cols=280 Identities=12% Similarity=0.060 Sum_probs=204.6
Q ss_pred EEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEE
Q 003208 24 CFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLF 102 (839)
Q Consensus 24 ~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw 102 (839)
+|+ |+ +.+++++. +++|.+||..+++++.++...+. +++++|+ |||+ .+++++.+++|++|
T Consensus 144 ~~~--p~----~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~s-------pdg~---~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLD--LP----NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMS-------ASGR---YLLVIGRDARIDMI 205 (543)
T ss_dssp CCC--GG----GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEEC-------TTSC---EEEEEETTSEEEEE
T ss_pred ccC--CC----CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEEC-------CCCC---EEEEECCCCeEEEE
Confidence 477 77 77777777 89999999999999999985443 8999999 9985 66777778999999
Q ss_pred EeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC-CCcEEEEEe-CCCcEEEEecCCCceEEEEecCC---
Q 003208 103 ELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE--- 177 (839)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~-~~~~las~~-~d~~i~vwd~~~~~~~~~~~~~~--- 177 (839)
|+.... ++.+..+.. ...+..++|+|... ++++|++++ .+++|.+||..+++++..+....
T Consensus 206 D~~~~t-------------~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 206 DLWAKE-------------PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp ETTSSS-------------CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred ECcCCC-------------CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 993111 456666664 45679999986211 678888877 48999999999999988876421
Q ss_pred -------ceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee
Q 003208 178 -------RCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (839)
Q Consensus 178 -------~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (839)
...+.++.+ ++ ...++++...++.|.+||.. ..+.+
T Consensus 272 ~~~~~~~~~~v~~i~~---s~~~~~~~vs~~~~g~i~vvd~~---------------------------------~~~~l 315 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIA---SHEHPEFIVNVKETGKVLLVNYK---------------------------------DIDNL 315 (543)
T ss_dssp SSCCEESCCCEEEEEE---CSSSSEEEEEETTTTEEEEEECT---------------------------------TSSSC
T ss_pred CccccccCCceEEEEE---CCCCCEEEEEECCCCeEEEEEec---------------------------------CCCcc
Confidence 112344444 34 44567778889999999987 22211
Q ss_pred --EEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE
Q 003208 250 --FRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (839)
Q Consensus 250 --~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 324 (839)
..+ .+...+..+.|+|+++++++++ .+++|.+||..+++. ...+. .....|......+... +..++++
T Consensus 316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-----~~~i~-~g~~ph~g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-----SALVD-VGKTPHPGRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-----EEeec-cCCCCCCCCCcccCCCCCccEEEec
Confidence 123 3567788999999999876554 689999999998765 33221 0112365444443222 3456666
Q ss_pred e-CCCeEEEEcC-C-------CceEEEeecccCCceEEEEEccCCCEEEEEe-------CCCcEEEEecCC
Q 003208 325 G-EDCTCRVWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-------FDSAIKVHQFQA 379 (839)
Q Consensus 325 ~-~dg~i~vw~~-~-------~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~-------~dg~i~iw~~~~ 379 (839)
. .|++|.+||. + .+++.++..|.+ ++..++++|++++|++++ .+++|.+||+..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 5 5899999999 5 788999999877 588899999999999987 277999999964
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=4e-20 Score=206.07 Aligned_cols=299 Identities=10% Similarity=0.031 Sum_probs=213.8
Q ss_pred CCcCccccccCCCceee------eeeEEEEecCCCCCCCcceEEEee-CCeeEEEEC--CCCeeeeEEeeecCceEEeEE
Q 003208 2 GKKDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDL--EAGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~~~------~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~--~~~~~~~~~~~~~~~~v~~i~ 72 (839)
.|++|.+||..+++... .+.+++|+ || +++|++++ |+.|++||+ .+++.+.++.. +..+..++
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~s--pd----g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va 228 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTGYAVHISRMS--AS----GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVE 228 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECSTTEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEE
T ss_pred CCCeEEEEECCCceEEEEEecCcccceEEEC--CC----CCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEE
Confidence 57899999999876322 36789999 99 88888877 899999999 88998888884 33589999
Q ss_pred ecccccccCC----CccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC----------CCc-ceE
Q 003208 73 CNFINCTEGS----VSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR----------LSH-WVF 136 (839)
Q Consensus 73 ~~~~~~~~~~----~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~-~I~ 136 (839)
|+ | ||+ .++++. .+++|.|||..+ ++++..+.. |.. .+.
T Consensus 229 ~s-------p~~~~dg~---~l~v~~~~~~~v~v~D~~t---------------~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 229 SS-------KFKGYEDR---YTIAGAYWPPQFAIMDGET---------------LEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp EC-------CSTTCTTT---EEEEEEEESSEEEEEETTT---------------CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred eC-------CCcCCCCC---EEEEEEccCCeEEEEeccc---------------cccceeecccCcccCccccccCCceE
Confidence 99 8 884 444443 489999999865 344444433 333 789
Q ss_pred EEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEE--EEecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEeec
Q 003208 137 DVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDW 212 (839)
Q Consensus 137 ~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~~ 212 (839)
++.++| ++. ++++...++.|.+||+.+.+.+. .+.. ......+.| ++++.+++++ ..++.|.+||..
T Consensus 284 ~i~~s~---~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~--~~~~~~~~~---spdg~~l~va~~~~~~v~v~D~~- 354 (543)
T 1nir_A 284 AIIASH---EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA--APFLHDGGW---DSSHRYFMTAANNSNKVAVIDSK- 354 (543)
T ss_dssp EEEECS---SSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC--CSSCCCEEE---CTTSCEEEEEEGGGTEEEEEETT-
T ss_pred EEEECC---CCCEEEEEECCCCeEEEEEecCCCcceeEEecc--CcCccCceE---CCCCCEEEEEecCCCeEEEEECC-
Confidence 999999 665 56677789999999998766544 3332 122333443 6888876654 568999999998
Q ss_pred cccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec----CCCCeEEEEEcCC-CCEEEEEe-CCCcEEEEEcc
Q 003208 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG----HEGSIFRIEWSSC-GSKLVSVS-DDRSARIWEVR 286 (839)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~~~~-~~~l~s~s-~d~~i~iwd~~ 286 (839)
+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||..
T Consensus 355 --------------------------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 355 --------------------------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp --------------------------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred --------------------------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 6666666653 65544444 4677 56666665 68999999998
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEe-------CCCeEEEEcC-CCceE-EEe--------eccc
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-------EDCTCRVWGS-DGKQL-KMI--------KEHI 347 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~-------~dg~i~vw~~-~~~~~-~~~--------~~h~ 347 (839)
+.... ....+.+ ..+.+|...+..++++ +++|++++ .+++|.+||+ +++.. ..+ ..+.
T Consensus 402 ~~~~~-~~~~~~v--~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 402 PKNHP-QYAWKKV--AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp TTTCT-TTBTSEE--EEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCCc-hhcCeEE--EEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 72110 0001222 2777888888889998 57888876 2789999999 66655 443 2333
Q ss_pred CCceEEEEEccCCCEEEEEe-----CCCcEEEEecCC
Q 003208 348 GRGIWRCLYDSLSSLLVTAG-----FDSAIKVHQFQA 379 (839)
Q Consensus 348 ~~~i~~~~~~~~~~~l~t~~-----~dg~i~iw~~~~ 379 (839)
. .+..+.|+|+|+.++++. .|+.|.+||.++
T Consensus 479 ~-~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 479 K-RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp C-EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred C-ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 3 699999999999887652 479999999865
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=8.6e-20 Score=197.31 Aligned_cols=271 Identities=11% Similarity=-0.002 Sum_probs=194.7
Q ss_pred Ccccccc--CCCcee---------eeeeEEEEecCCCC-----------CCCcceEEEeeC------CeeEEEECCCCee
Q 003208 5 DLSEWRL--DVGQYL---------GEISALCFVHLPSH-----------LSSLPFLLAGSG------SQVLLYDLEAGTL 56 (839)
Q Consensus 5 ~i~~w~~--~~~~~~---------~~Vt~l~f~~~~~~-----------~~~~~~l~~g~~------~~v~iwd~~~~~~ 56 (839)
++++||+ .+++.. ..+..++++ +.+ .-+.++++++.+ +.|++||.. +..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~ 170 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHT--ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYN 170 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHH--HHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCS
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHH--HHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCC
Confidence 8999999 777632 123344443 200 001456666553 699999987 455
Q ss_pred eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC---cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCc
Q 003208 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE---KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (839)
Q Consensus 57 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 133 (839)
+..+..+.. .|.+++|+ |||+ .++.++.+ ..|++||+..+. . ..+..|..
T Consensus 171 ~~~l~~~~~-~v~~~~~S-------pdg~---~la~~s~~~~~~~i~~~d~~tg~---------------~-~~l~~~~~ 223 (415)
T 2hqs_A 171 QFVVHRSPQ-PLMSPAWS-------PDGS---KLAYVTFESGRSALVIQTLANGA---------------V-RQVASFPR 223 (415)
T ss_dssp CEEEEEESS-CEEEEEEC-------TTSS---EEEEEECTTSSCEEEEEETTTCC---------------E-EEEECCSS
T ss_pred CEEEeCCCC-cceeeEEc-------CCCC---EEEEEEecCCCcEEEEEECCCCc---------------E-EEeecCCC
Confidence 566666554 69999999 9984 45555544 499999997532 2 24557888
Q ss_pred ceEEEEEeeccCCCcEEE-EEeCCCc--EEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec-CC--eEEE
Q 003208 134 WVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YN--EIIV 207 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~la-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~-dg--~i~v 207 (839)
.+.+++|+| +++.|+ +++.++. |++||+.+++. ..+..+. ..+.++.| +|++..|++++. ++ .|++
T Consensus 224 ~~~~~~~sp---dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~~---spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 224 HNGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR-SNNTEPTW---FPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp CEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEE
T ss_pred cccCEEEcC---CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC-CcccceEE---CCCCCEEEEEECCCCCcEEEE
Confidence 999999999 999887 6666554 99999988765 3443332 33555655 689998888775 45 5666
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEE
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RSARIWE 284 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---~~i~iwd 284 (839)
||+. ..+ ...+..|...+.+++|+|+|++|++++.+ ..|++||
T Consensus 296 ~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 296 VNIN---------------------------------GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EETT---------------------------------SSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred EECC---------------------------------CCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 6765 222 33455677889999999999999988764 5899999
Q ss_pred cccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC---eEEEEcCCCceEEEeecccCCceEEEEEccC
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~ 359 (839)
+.+++. ..+..+. .+.+++|+ +++|++++.++ .|++||++++....+..|.+ .|.+++|+|.
T Consensus 342 ~~~~~~-----------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~-~v~~~~~~~~ 408 (415)
T 2hqs_A 342 LATGGV-----------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG-QVKFPAWSPY 408 (415)
T ss_dssp TTTCCE-----------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS-EEEEEEECCC
T ss_pred CCCCCE-----------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCC-CCcCCccccc
Confidence 987654 2444454 78999998 57888888777 79999998888899999988 6999999996
Q ss_pred C
Q 003208 360 S 360 (839)
Q Consensus 360 ~ 360 (839)
.
T Consensus 409 ~ 409 (415)
T 2hqs_A 409 L 409 (415)
T ss_dssp C
T ss_pred c
Confidence 4
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=4.1e-19 Score=208.67 Aligned_cols=309 Identities=11% Similarity=-0.000 Sum_probs=199.8
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEee--CC-----eeEEEECCCCeeeeEEeeecC-----------------------c
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGS--GS-----QVLLYDLEAGTLIRPFQVFHG-----------------------I 66 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~--~~-----~v~iwd~~~~~~~~~~~~~~~-----------------------~ 66 (839)
...|++++|+ || +++|+++. ++ .|++||+.+++....+..+.. .
T Consensus 36 ~~~~~~~~~S--pd----G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVA--PD----GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEEC--TT----SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCE
T ss_pred CCCCCCceEe--cC----CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence 4569999999 99 77777655 66 899999999987766654322 2
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
.|.+++|+ ||| ..|+...++.|++||+.... ......+..|...+.+++|+| +
T Consensus 110 ~v~~~~~S-------pDg----~~l~~~~~~~i~~~d~~~~~-------------~~~~~~l~~~~~~~~~~~~SP---D 162 (741)
T 2ecf_A 110 GIVDYQWS-------PDA----QRLLFPLGGELYLYDLKQEG-------------KAAVRQLTHGEGFATDAKLSP---K 162 (741)
T ss_dssp ESCCCEEC-------TTS----SEEEEEETTEEEEEESSSCS-------------TTSCCBCCCSSSCEEEEEECT---T
T ss_pred CcceeEEC-------CCC----CEEEEEeCCcEEEEECCCCC-------------cceEEEcccCCcccccccCCC---C
Confidence 37889999 998 56666666999999997531 002334567788899999999 9
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCcee---------------EEEEeeccCCccceEEEEeecCC-eEEEEEe
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL---------------LYSMKLWGDNLEALRIASGTIYN-EIIVWKV 210 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~---------------~~s~~~~~~~~~~~~l~sg~~dg-~i~vw~~ 210 (839)
+++||.++ ++.|++||+.+++.......+...+ ..++.+ +|++.+|++++.|+ .+..|..
T Consensus 163 G~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~---SpDg~~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 163 GGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW---APDDSAIAYARIDESPVPVQKR 238 (741)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE---CTTSSCEEEEEEECTTSCEEEE
T ss_pred CCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEE---CCCCCEEEEEEEcCCCCceEec
Confidence 99999887 5689999998877654433322211 123333 79999999887664 2222210
Q ss_pred eccccccCCC--CCCCccCCCCCCCceeeEeeccccc-ceeeEEEe--cCCCCeEEEEEcCCCCEEEEEeC-----CCcE
Q 003208 211 DWEHVAPLLN--SPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD-----DRSA 280 (839)
Q Consensus 211 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~-----d~~i 280 (839)
. ...+... ....+...+.......+.+|+.. . ++...... .|...+..++| |||++|+.++. +..|
T Consensus 239 ~--~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 239 Y--EVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp E--EECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred C--CCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 0 0000000 00000001111112233334432 2 33222222 47888999999 99999987764 5679
Q ss_pred EEEEcccCccCCCCCceeeeceEeecccc----ceEEeEEC--CCEEEEEeCCCeEEEEcC--CCceEEEeecccCCceE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA----RVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIW 352 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~ 352 (839)
++||+.+++. .. ....+.. .+..++|+ ++++++++.||.++||.+ +++ ...+..+.. .+.
T Consensus 315 ~~~d~~~g~~-----~~-----~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~-~v~ 382 (741)
T 2ecf_A 315 VEVTLASNQQ-----RV-----LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW-SVD 382 (741)
T ss_dssp EEEETTTCCE-----EE-----EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS-CEE
T ss_pred EEEECCCCce-----EE-----EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce-EEE
Confidence 9999988754 22 2222222 34578888 578889999997777765 566 777777766 587
Q ss_pred EE-EEccCCCEEEE-EeCCC--cEEEEecC
Q 003208 353 RC-LYDSLSSLLVT-AGFDS--AIKVHQFQ 378 (839)
Q Consensus 353 ~~-~~~~~~~~l~t-~~~dg--~i~iw~~~ 378 (839)
.+ .|+|+++.|+. ++.++ .+++|++.
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 87 59999987754 44455 89999874
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=3.4e-19 Score=208.85 Aligned_cols=327 Identities=9% Similarity=0.008 Sum_probs=215.1
Q ss_pred CccccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecC--ceEEeEEecccccccCC
Q 003208 5 DLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGS 82 (839)
Q Consensus 5 ~i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~ 82 (839)
.+.+.++..+.....+.+++|+ || +++++++.++.|++||+.+++....+..+.. ..|.+++|+ |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~s--pd----g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-------p 70 (723)
T 1xfd_A 4 KVTVEDLFSEDFKIHDPEAKWI--SD----TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-------P 70 (723)
T ss_dssp CCCHHHHTCTTTCCCCCCCCBS--SS----SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-------T
T ss_pred cccHHHHhCCCCcccccccEEc--CC----CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEEC-------C
Confidence 3555566666666678899999 99 7788876689999999999987766664332 138999999 9
Q ss_pred CccceeeEEEEEcC---------cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE
Q 003208 83 VSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (839)
Q Consensus 83 ~~~~~~~~l~~~~~---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~ 153 (839)
||+ .++.++.+ +.+.+||+..+. .+.+....+|...+..++|+| +++.||.+
T Consensus 71 Dg~---~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~~~~SP---dG~~la~~ 131 (723)
T 1xfd_A 71 DRE---YALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------PQSLDPPEVSNAKLQYAGWGP---KGQQLIFI 131 (723)
T ss_dssp TSS---EEEEEESCCCCSSSCCCSEEEEEESSSCC-------------CEECCCTTCCSCCCSBCCBCS---STTCEEEE
T ss_pred CCC---EEEEEecCccceeecceeeEEEEECCCCc-------------eEeccCCccccccccccEECC---CCCEEEEE
Confidence 984 44444432 789999998643 233344456667799999999 99999998
Q ss_pred eCCCcEEEEecCCCceEEEEecCCcee-----------------EEEEeeccCCccceEEEEeecC-CeEEEEEeecccc
Q 003208 154 CSDNSIRVWDISNSSIILEVHSPERCL-----------------LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHV 215 (839)
Q Consensus 154 ~~d~~i~vwd~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~~~~~~l~sg~~d-g~i~vw~~~~~~~ 215 (839)
+. +.|++||+.+++.......+.... ..++.+ +|++..|++++.+ +.+.+|++.....
T Consensus 132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~---SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW---SPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE---CTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEE---CCCCCEEEEEEECCCccceEEeeccCC
Confidence 85 799999999887766554433221 123444 7999999887765 4677887652111
Q ss_pred ccCCC-CCCCccCCCCCCCceeeEeecccccceeeEEEecC------CCCeEEEEEcCCCCEEEEEeC----CCcEEEEE
Q 003208 216 APLLN-SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWE 284 (839)
Q Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s~----d~~i~iwd 284 (839)
..... ....+.+.+.......+.+|+.. ..+....+..+ ...+..++|+|||+++++.+. +..|++||
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 10000 01111222333345577888865 33333445543 678999999999998877653 35799999
Q ss_pred cccCccCCCCCceeeeceEeeccccceE----EeEEC--CCEEEE--EeCCC------eEEEEc-CCCce---EEEeecc
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYGHNARVW----DCCLT--DSFIIT--AGEDC------TCRVWG-SDGKQ---LKMIKEH 346 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~~--~~~l~s--~~~dg------~i~vw~-~~~~~---~~~~~~h 346 (839)
+.+++. ... ....+...+. .++|+ ++.|+. ...++ .|.+|| ..+.. ...+..+
T Consensus 287 ~~~g~~-----~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 357 (723)
T 1xfd_A 287 ATTGVC-----TKK----HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (723)
T ss_dssp TTTCCE-----EEE----EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred CCCCcc-----eEE----EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence 987654 121 1122333333 67888 454443 55677 678888 44433 4555433
Q ss_pred cCCceEE-EEEccCCCEEEEEeCC---CcEEEEecC
Q 003208 347 IGRGIWR-CLYDSLSSLLVTAGFD---SAIKVHQFQ 378 (839)
Q Consensus 347 ~~~~i~~-~~~~~~~~~l~t~~~d---g~i~iw~~~ 378 (839)
.. .+.. ++|+|+|+.|+..+.+ +.+++|+++
T Consensus 358 ~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 358 DW-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp SS-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred Ce-EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 33 3554 6899999998776655 789999984
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.81 E-value=2.7e-17 Score=172.58 Aligned_cols=275 Identities=10% Similarity=0.024 Sum_probs=185.3
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~ 112 (839)
+.+++++. ++.|++||..+++.+..+..... .+ +++|+ |+|+ .++++.. ++.|.+||+....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s-------~dg~---~l~~~~~~~~~i~~~d~~~~~---- 73 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYD-FV-DTAIT-------SDCS---NVVVTSDFCQTLVQIETQLEP---- 73 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCC-EE-EEEEC-------SSSC---EEEEEESTTCEEEEEECSSSS----
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCC-cc-eEEEc-------CCCC---EEEEEeCCCCeEEEEECCCCc----
Confidence 44455554 89999999999999888875544 46 99999 8884 4555554 7899999997633
Q ss_pred CCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCC---cEEEEecCCCceEEEEecCCceeEEEEeeccC
Q 003208 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGD 189 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~ 189 (839)
. ....+..+..+..+++|+| ++++|+++..++ .|.+||+.+++.+..+...... ..+.+
T Consensus 74 ---------~-~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~--- 135 (331)
T 3u4y_A 74 ---------P-KVVAIQEGQSSMADVDITP---DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA--VGIAI--- 135 (331)
T ss_dssp ---------C-EEEEEEECSSCCCCEEECT---TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE--EEEEE---
T ss_pred ---------e-eEEecccCCCCccceEECC---CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc--cceEE---
Confidence 1 1455556666666699999 999998555442 8999999999888877654432 34554
Q ss_pred CccceEEEE-eecCCe-EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCC
Q 003208 190 NLEALRIAS-GTIYNE-IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (839)
Q Consensus 190 ~~~~~~l~s-g~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 267 (839)
+|++.++++ +..++. |.+|++....... ... ...+ .+...+..++|+|+
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~---------------------------~~~-~~~~-~~~~~~~~~~~spd 186 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLF---------------------------DTG-QEFI-SGGTRPFNITFTPD 186 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEE---------------------------EEE-EEEE-CSSSSEEEEEECTT
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEe---------------------------ecC-Cccc-cCCCCccceEECCC
Confidence 688875554 455578 9999987110000 011 1122 34456899999999
Q ss_pred CCEEEE-EeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEE-eCCCeEEEEcC-CCce--E
Q 003208 268 GSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQ--L 340 (839)
Q Consensus 268 ~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~-~~~~--~ 340 (839)
+++++. +..++.|++||+.+.+. .+.+. .+. ....+..++|+ +++++.+ ..++.|.+||. +++. +
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~-----~~~~~--~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPEN-----ITLLN--AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTS-----CEEEE--EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcc-----cceee--ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 996655 45689999999987654 12221 222 33566788998 5655544 45788999999 5555 3
Q ss_pred EEeecc----cC--CceEEEEEccCCCEEEEEeC-CCcEEEEecCCc
Q 003208 341 KMIKEH----IG--RGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQAF 380 (839)
Q Consensus 341 ~~~~~h----~~--~~i~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~ 380 (839)
..+..+ .. .....++|+|++++|++++. ++.|.+||+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 333222 11 11245899999998866555 679999999654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=6.1e-17 Score=170.74 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=177.9
Q ss_pred ceEEEee-CCeeEEEECC-CCe--eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC-cEEEEEEeeccCCC
Q 003208 36 PFLLAGS-GSQVLLYDLE-AGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELSP 110 (839)
Q Consensus 36 ~~l~~g~-~~~v~iwd~~-~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~-~~i~iw~~~~~~~~ 110 (839)
.+++++. ++.|++||+. +++ .+..+. +...+.+++|+ |+|+ .++++..+ +.|++|+++....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s-------pdg~---~l~~~~~~~~~v~~~~~~~~~~- 72 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVS-------PDKR---YLYVGVRPEFRVLAYRIAPDDG- 72 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEEC-------TTSS---EEEEEETTTTEEEEEEECTTTC-
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEEC-------CCCC---EEEEeecCCCeEEEEEecCCCC-
Confidence 3444434 8999999985 343 333333 34468999999 8884 45555554 9999999973210
Q ss_pred CCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecC---CCceEEEEecCCceeEEEEee
Q 003208 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDIS---NSSIILEVHSPERCLLYSMKL 186 (839)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~---~~~~~~~~~~~~~~~~~s~~~ 186 (839)
..+.+..+..+. .+.+++|+| ++++|++++. ++.|.+||+. ..+.+..+..... +..+.+
T Consensus 73 ----------~~~~~~~~~~~~-~~~~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~ 136 (343)
T 1ri6_A 73 ----------ALTFAAESALPG-SLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG--CHSANI 136 (343)
T ss_dssp ----------CEEEEEEEECSS-CCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT--BCCCEE
T ss_pred ----------ceeeccccccCC-CCcEEEEcC---CCCEEEEEecCCCeEEEEECCCCccccccccccCCCC--ceEEEE
Confidence 134455555444 789999999 9998876654 8899999994 3334444443322 233333
Q ss_pred ccCCccceEEEEee-cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE--EEec-CCCCeEEE
Q 003208 187 WGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF--RLVG-HEGSIFRI 262 (839)
Q Consensus 187 ~~~~~~~~~l~sg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-h~~~V~~l 262 (839)
++++.++++++ .++.|++|++.... ...... .+.. ....+.++
T Consensus 137 ---s~dg~~l~~~~~~~~~v~~~d~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 137 ---SPDNRTLWVPALKQDRICLFTVSDDG------------------------------HLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp ---CTTSSEEEEEEGGGTEEEEEEECTTS------------------------------CEEEEEEEEEECSTTCCEEEE
T ss_pred ---CCCCCEEEEecCCCCEEEEEEecCCC------------------------------ceeeecccccccCCCCCcceE
Confidence 58888777776 89999999997100 011111 2222 33578899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeeceE-ee-cc--ccceEEeEEC--CCEEE-EEeCCCeEEEEc
Q 003208 263 EWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSV-LY-GH--NARVWDCCLT--DSFII-TAGEDCTCRVWG 334 (839)
Q Consensus 263 ~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~h--~~~v~~~~~~--~~~l~-s~~~dg~i~vw~ 334 (839)
+|+|+++++++++ .++.|++|++...... ........ .. ++ ...+..++|+ +++++ ++..++.|.+|+
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGN----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSC----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCc----EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 9999999776555 8899999999642210 11111111 11 11 2356688998 45665 555899999999
Q ss_pred CC--C---ceEEEeecccCCceEEEEEccCCCEEEEEe-CCCcEEEEecC
Q 003208 335 SD--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (839)
Q Consensus 335 ~~--~---~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~-~dg~i~iw~~~ 378 (839)
+. + +.+..+..+. .+..++|+|++++|++++ .++.|.+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 260 VSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 84 2 2333444333 378899999999888887 58999999763
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=1.1e-16 Score=169.62 Aligned_cols=267 Identities=11% Similarity=0.027 Sum_probs=193.0
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEee--------CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCcccee
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGS--------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~--------~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 88 (839)
...+..++|+ |+ +++++++. ++.|.+||..+++.+..+.... .+.+++++ |+|+
T Consensus 40 ~~~~~~~~~s--~d----g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s-------~dg~--- 101 (353)
T 3vgz_A 40 GKGAYEMAYS--QQ----ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATIN-------NTTQ--- 101 (353)
T ss_dssp ESSEEEEEEE--TT----TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEE-------TTTT---
T ss_pred ccCccceEEC--CC----CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEEC-------CCCC---
Confidence 3457899999 98 66666665 4689999999999988887533 47899999 8874
Q ss_pred eEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCc---------ceEEEEEeeccCCCcEEEEEe--CC
Q 003208 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH---------WVFDVCFLKVCNGNRSLAIGC--SD 156 (839)
Q Consensus 89 ~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~I~~~~~~~~~~~~~~las~~--~d 156 (839)
.++++. .++.|.+||+... +.+..+..+.. .+.+++|+| +++++++++ .+
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~ 163 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTG---------------EVKGRLVLDDRKRTEEVRPLQPRELVADD---ATNTVYISGIGKE 163 (353)
T ss_dssp EEEEEETTTTEEEEEETTTC---------------CEEEEEESCCCCCCSSCCCCEEEEEEEET---TTTEEEEEEESSS
T ss_pred EEEEEecCCCEEEEEeCCCC---------------eeEEEEecCCCccccccCCCCCceEEECC---CCCEEEEEecCCC
Confidence 455444 4699999998753 33444433322 278999999 998777665 47
Q ss_pred CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCcee
Q 003208 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (839)
Q Consensus 157 ~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (839)
+.|.+||..+++.+..+..... ....+.+ ++++.++++++.++.|.+||..
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~---s~dg~~l~~~~~~~~i~~~d~~------------------------- 214 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGK-MSTGLAL---DSEGKRLYTTNADGELITIDTA------------------------- 214 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCT-TCCCCEE---ETTTTEEEEECTTSEEEEEETT-------------------------
T ss_pred ceEEEEcCCCCceEEEecCCCC-ccceEEE---CCCCCEEEEEcCCCeEEEEECC-------------------------
Confidence 8899999999998887762211 1122333 4888999999999999999987
Q ss_pred eEeecccccceeeEEEe----cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccCccCCCCCceeeeceEeeccccce
Q 003208 237 FKLQDQQHTAVNLFRLV----GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (839)
Q Consensus 237 ~~~~~~~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 311 (839)
+.+....+. ++...+.+++|+|++++++.++. ++.|.+||..+++. .. ...... .
T Consensus 215 --------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~-----~~~~~~--~ 274 (353)
T 3vgz_A 215 --------DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-----LA-----KVAAPE--S 274 (353)
T ss_dssp --------TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-----EE-----EEECSS--C
T ss_pred --------CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-----EE-----EEEcCC--C
Confidence 455554444 35667889999999998776665 58999999987655 22 111111 2
Q ss_pred EEeEEC--CCEE-EEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCC
Q 003208 312 WDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (839)
Q Consensus 312 ~~~~~~--~~~l-~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg 370 (839)
..++|+ ++++ ++...++.|.+||. +++.+..+.... .+.+++|+|++++|+++..++
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 457776 5645 45557999999999 777777776544 488999999999777766553
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=5.9e-18 Score=174.24 Aligned_cols=249 Identities=11% Similarity=0.044 Sum_probs=179.0
Q ss_pred CCcCccccccCCCc------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCC-CeeeeEEeeecCceEEeEEec
Q 003208 2 GKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCN 74 (839)
Q Consensus 2 ~d~~i~~w~~~~~~------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~~ 74 (839)
.|++|++||+.+++ |.+.|.+++|+ |+ +++|+++.++.|++||+.+ ++.......+....|.+++|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWS--PD----GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEEC--TT----SSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEEC--CC----CCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 57899999998876 56779999999 99 8899998999999999998 877665555544568899999
Q ss_pred ccccccCCCccceeeEEEEE--cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE-
Q 003208 75 FINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA- 151 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~--~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la- 151 (839)
|+++ .++++. .++..+||.++... .+ ...+..+. .+..++|+| ++++|+
T Consensus 94 -------pdg~---~l~~~~~~~~~~~~l~~~~~~~-------------~~-~~~~~~~~-~~~~~~~sp---dg~~l~~ 145 (297)
T 2ojh_A 94 -------PDGA---LYAISDKVEFGKSAIYLLPSTG-------------GT-PRLMTKNL-PSYWHGWSP---DGKSFTY 145 (297)
T ss_dssp -------TTSS---EEEEEECTTTSSCEEEEEETTC-------------CC-CEECCSSS-SEEEEEECT---TSSEEEE
T ss_pred -------CCCC---EEEEEEeCCCCcceEEEEECCC-------------Cc-eEEeecCC-CccceEECC---CCCEEEE
Confidence 8884 455555 23567777776432 11 23333333 489999999 998777
Q ss_pred EEeCCCcEEEEecCC-CceEEEEecCCceeEEEEeeccCCccceEEEEee-cCCeEEEEEeeccccccCCCCCCCccCCC
Q 003208 152 IGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 152 s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
+++.++.+++|++.. ......+..+. ..+.++.+ ++++..|+.++ .++.+.+|++..
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~---s~dg~~l~~~~~~~~~~~i~~~~~----------------- 204 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGE-GRNDGPDY---SPDGRWIYFNSSRTGQMQIWRVRV----------------- 204 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEET-----------------
T ss_pred EECCCCceEEEEEECCCCcceEcccCC-CccccceE---CCCCCEEEEEecCCCCccEEEECC-----------------
Confidence 778899999998642 22233333222 23445555 67888777655 589999999871
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcccCccCCCCCcee
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-----------RSARIWEVRAEYWKDSDSIEE 298 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~~~ 298 (839)
.......+..|...+..++|+|++++|++++.+ +.|++||+.+++. ..
T Consensus 205 ---------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~ 263 (297)
T 2ojh_A 205 ---------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV------ET 263 (297)
T ss_dssp ---------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC------EE
T ss_pred ---------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc------ee
Confidence 233455667788889999999999999888876 5699999987654 21
Q ss_pred eeceEeeccccceEEeEEC--CCEEEEEeCCC
Q 003208 299 VGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (839)
Q Consensus 299 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 328 (839)
+ ....+|...+.+++|+ ++.|++++.+.
T Consensus 264 ~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 264 L--FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp E--EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred e--eccCCCCcccccceECCCCCEEEEEEecc
Confidence 1 1345778889999998 57777776553
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=6.1e-17 Score=170.72 Aligned_cols=284 Identities=16% Similarity=0.208 Sum_probs=183.4
Q ss_pred CCcCccccccC-CCc--------eeeeeeEEEEecCCCCCCCcceEEEee-C-CeeEEEECC--CCee--eeEEeeecCc
Q 003208 2 GKKDLSEWRLD-VGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-G-SQVLLYDLE--AGTL--IRPFQVFHGI 66 (839)
Q Consensus 2 ~d~~i~~w~~~-~~~--------~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~-~~v~iwd~~--~~~~--~~~~~~~~~~ 66 (839)
.|++|++|++. ++. +...+.+++|+ |+ +++|+++. + +.|++|++. +++. +..+... .
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~- 84 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS--PD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G- 84 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC--TT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S-
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC--CC----CCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C-
Confidence 58899999985 221 34568899999 99 77777766 4 899999997 5553 3344432 2
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
.+.+++|+ |+|+ .++++.. ++.|.+|++..+. ..+....+..+. .+.+++|+|
T Consensus 85 ~~~~~~~s-------~dg~---~l~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~~-~~~~~~~s~--- 138 (343)
T 1ri6_A 85 SLTHISTD-------HQGQ---FVFVGSYNAGNVSVTRLEDGL------------PVGVVDVVEGLD-GCHSANISP--- 138 (343)
T ss_dssp CCSEEEEC-------TTSS---EEEEEETTTTEEEEEEEETTE------------EEEEEEEECCCT-TBCCCEECT---
T ss_pred CCcEEEEc-------CCCC---EEEEEecCCCeEEEEECCCCc------------cccccccccCCC-CceEEEECC---
Confidence 68899999 8884 4545544 7899999995211 134455555444 588999999
Q ss_pred CCcEEEEEe-CCCcEEEEecCC-CceEE----EEecCCceeEEEEeeccCCccceEEEE-eecCCeEEEEEeeccccccC
Q 003208 146 GNRSLAIGC-SDNSIRVWDISN-SSIIL----EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 146 ~~~~las~~-~d~~i~vwd~~~-~~~~~----~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~dg~i~vw~~~~~~~~~~ 218 (839)
++++|++++ .++.|++||+.+ ++... ....+.......+.+ ++++.++++ +..++.|.+|++.....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~pdg~~l~~~~~~~~~i~~~~~~~~~g--- 212 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF---HPNEQYAYCVNELNSSVDVWELKDPHG--- 212 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEESSCTTS---
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE---CCCCCEEEEEeCCCCEEEEEEecCCCC---
Confidence 998888777 899999999987 54432 233333333444555 678886655 45789999999861000
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEe----c--CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcccCccC
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----G--HEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWK 291 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--h~~~V~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~ 291 (839)
......... + ....+..++|+|++++|+ ++..++.|++||+......
T Consensus 213 --------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~ 266 (343)
T 1ri6_A 213 --------------------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 266 (343)
T ss_dssp --------------------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred --------------------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc
Confidence 011111111 1 134677899999998877 4557999999999832110
Q ss_pred CCCCceeeeceEeeccccceEEeEEC--CCEEEEEe-CCCeEEEEcC---CCc--eEEEeecccCCceEEEEEccCC
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGK--QLKMIKEHIGRGIWRCLYDSLS 360 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~---~~~--~~~~~~~h~~~~i~~~~~~~~~ 360 (839)
.+.+. .+..+.. +..++|+ ++++++++ .++.+.+|++ +++ .+..+... ....+++|.++.
T Consensus 267 ----~~~~~--~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~ 334 (343)
T 1ri6_A 267 ----LSKEG--FQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHE 334 (343)
T ss_dssp ----EEEEE--EEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC
T ss_pred ----eEEee--eecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEccc
Confidence 12221 2333333 7889998 57777777 6899999955 343 23333332 235677777654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=1.9e-17 Score=193.27 Aligned_cols=276 Identities=8% Similarity=0.027 Sum_probs=190.4
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
.+|++++|+ || +.+++ +.++.|++||+.+++...... +. ..+..++|+ ||| ..++...++
T Consensus 82 ~~v~~~~~s--pd----~~~~~-~~~~~i~~~d~~~~~~~~l~~-~~-~~~~~~~~S-------pdG----~~la~~~~~ 141 (706)
T 2z3z_A 82 FPSFRTLDA--GR----GLVVL-FTQGGLVGFDMLARKVTYLFD-TN-EETASLDFS-------PVG----DRVAYVRNH 141 (706)
T ss_dssp CCCEEEEET--TT----TEEEE-EETTEEEEEETTTTEEEEEEC-CT-TCCTTCEEC-------TTS----SEEEEEETT
T ss_pred cCceeEEEC--CC----CeEEE-EECCEEEEEECCCCceEEccC-Cc-ccccCCcCC-------CCC----CEEEEEECC
Confidence 469999999 88 54444 467999999999887654433 23 358889999 998 566667889
Q ss_pred EEEEEEeec-----cCCCCCCCCCccccceeeeEeccCCC--------------cceEEEEEeeccCCCcEEEEEe----
Q 003208 98 RVKLFELNF-----ELSPNSQYQPETCVNLSLVQSLPRLS--------------HWVFDVCFLKVCNGNRSLAIGC---- 154 (839)
Q Consensus 98 ~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~--------------~~I~~~~~~~~~~~~~~las~~---- 154 (839)
.|++|++.. +. .......+. ..+.+++|+| ++++|++++
T Consensus 142 ~i~v~~~~~~~~~~g~---------------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp---Dg~~la~~~~d~~ 203 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSR---------------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP---KGSCLAFYRMDQS 203 (706)
T ss_dssp EEEEEECBCTTSCCCC---------------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT---TSSEEEEEEEECT
T ss_pred eEEEEecCcccccCCC---------------cEEeccCCCCCeEcccchhhhhcCCCceEEECC---CCCEEEEEEECCC
Confidence 999999985 32 111111222 2358999999 999999987
Q ss_pred -----------------------------CCCcEEEEecCCCceEEEEec-CCceeEEEEeeccCCccceEEEEeecCC-
Q 003208 155 -----------------------------SDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYN- 203 (839)
Q Consensus 155 -----------------------------~d~~i~vwd~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~sg~~dg- 203 (839)
.+..|.+||+.+++....... .....+.++.+ ++++..|++++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW---SPDENILYVAEVNRA 280 (706)
T ss_dssp TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE---CTTSSEEEEEEECTT
T ss_pred CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE---ECCCCEEEEEEeCCC
Confidence 446799999988876543322 22334556665 78999999887765
Q ss_pred ----eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe--cCCC---CeEEEEEcC--CCCEEE
Q 003208 204 ----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEG---SIFRIEWSS--CGSKLV 272 (839)
Q Consensus 204 ----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~---~V~~l~~~~--~~~~l~ 272 (839)
.|++||+. +++....+. .+.. .+..++|+| +|++++
T Consensus 281 ~~~~~v~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 281 QNECKVNAYDAE---------------------------------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp SCEEEEEEEETT---------------------------------TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred CCeeEEEEEECC---------------------------------CCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 89999987 331111111 2222 346789999 999999
Q ss_pred EEeCCCcEEEEEcc-cCccCCCCCceeeeceEeeccccceEE-eEEC--CCEEEE-EeCCC----eEEEEcCCCceEEEe
Q 003208 273 SVSDDRSARIWEVR-AEYWKDSDSIEEVGSSVLYGHNARVWD-CCLT--DSFIIT-AGEDC----TCRVWGSDGKQLKMI 343 (839)
Q Consensus 273 s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~--~~~l~s-~~~dg----~i~vw~~~~~~~~~~ 343 (839)
+++.|+.+++|+++ +... . ..+..|...+.. ++|+ ++.|+. +..++ .|..|+..+.....+
T Consensus 328 ~~~~~g~~~l~~~~~~~~~-----~-----~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRL-----I-----RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EECTTSSCEEEEEETTSCE-----E-----EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred EEccCCccEEEEEECCCCE-----E-----EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 99999999999886 3222 1 245566667776 7898 455554 44444 677777744334445
Q ss_pred ecccCCceEEEEEccCCCEEEEEeCC----CcEEEEecCC
Q 003208 344 KEHIGRGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQA 379 (839)
Q Consensus 344 ~~h~~~~i~~~~~~~~~~~l~t~~~d----g~i~iw~~~~ 379 (839)
. +.. .+.+++|+|+|++++....+ +.|.+||+++
T Consensus 398 ~-~~~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 398 T-PES-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp C-CSS-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred c-CCC-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 4 444 58999999999988776543 5699999865
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=1.2e-17 Score=196.14 Aligned_cols=278 Identities=12% Similarity=0.080 Sum_probs=195.2
Q ss_pred eeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe--eeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
.|.+++|| || +++|+.+.++.|++||+.+++ .+..+..+. ..+..++|+ ||| ..|+...+
T Consensus 110 ~v~~~~~S--pD----g~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~-~~~~~~~~S-------PDG----~~la~~~~ 171 (741)
T 2ecf_A 110 GIVDYQWS--PD----AQRLLFPLGGELYLYDLKQEGKAAVRQLTHGE-GFATDAKLS-------PKG----GFVSFIRG 171 (741)
T ss_dssp ESCCCEEC--TT----SSEEEEEETTEEEEEESSSCSTTSCCBCCCSS-SCEEEEEEC-------TTS----SEEEEEET
T ss_pred CcceeEEC--CC----CCEEEEEeCCcEEEEECCCCCcceEEEcccCC-cccccccCC-------CCC----CEEEEEeC
Confidence 48899999 99 889998888999999999872 334454443 369999999 998 66777677
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc----------------eEEEEEeeccCCCcEEEEEeCCC---
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW----------------VFDVCFLKVCNGNRSLAIGCSDN--- 157 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------------I~~~~~~~~~~~~~~las~~~d~--- 157 (839)
+.|++||+..+ +.......+... +.+++|+| ++++|++++.|+
T Consensus 172 ~~i~~~d~~~g---------------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp---Dg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 172 RNLWVIDLASG---------------RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP---DDSAIAYARIDESPV 233 (741)
T ss_dssp TEEEEEETTTT---------------EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT---TSSCEEEEEEECTTS
T ss_pred CcEEEEecCCC---------------CEEEeccCCccceeccccceeeeeccccccceEECC---CCCEEEEEEEcCCCC
Confidence 89999998752 222222222221 47899999 999999987765
Q ss_pred ------------------------------cEEEEecCC-CceEEEEec-CCceeEEEEeeccCCccceEEEEeec----
Q 003208 158 ------------------------------SIRVWDISN-SSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTI---- 201 (839)
Q Consensus 158 ------------------------------~i~vwd~~~-~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~sg~~---- 201 (839)
.|.+||+.+ ++....... .....+..+.+ +++..|++++.
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----pDg~~l~~~~~~~~~ 309 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW----RDPQHLSFQRQSRDQ 309 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE----EETTEEEEEEEETTS
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe----CCCCEEEEEEecccC
Confidence 789999988 775543322 22333444443 67888876553
Q ss_pred -CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC----CeEEEEEcCCCCEEEEEeC
Q 003208 202 -YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 202 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~l~~~~~~~~l~s~s~ 276 (839)
+..|++||+. +++....+..|.. .+..++|+|+|+.+++++.
T Consensus 310 ~~~~i~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 356 (741)
T 2ecf_A 310 KKLDLVEVTLA---------------------------------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER 356 (741)
T ss_dssp SEEEEEEEETT---------------------------------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT
T ss_pred CeEEEEEEECC---------------------------------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC
Confidence 5679999987 4444444444443 4568999999999999999
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEe-EEC--CCEE-EEEeCCC--eEEEEcC--CCceEEEeecccC
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLT--DSFI-ITAGEDC--TCRVWGS--DGKQLKMIKEHIG 348 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~--~~~l-~s~~~dg--~i~vw~~--~~~~~~~~~~h~~ 348 (839)
|+.+++|.++.... . ..+..|...+..+ .|+ ++.+ ++++.++ .+++|++ .+.....+.. ..
T Consensus 357 ~g~~~l~~~~~~~~-----~-----~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 357 TGFQHLYRIDSKGK-----A-----AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp TSSCEEEEECSSSC-----E-----EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred CCccEEEEEcCCCC-----e-----eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 99888887753211 1 2566677778776 587 4555 4555555 8999987 4666666765 33
Q ss_pred CceEEEEEccCCCEEEEEeCC----CcEEEEecCCcC
Q 003208 349 RGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQAFL 381 (839)
Q Consensus 349 ~~i~~~~~~~~~~~l~t~~~d----g~i~iw~~~~~~ 381 (839)
.+..++|+|+++.|+....+ ..+.+++..+..
T Consensus 426 -~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 426 -GMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp -SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred -CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 58899999999987766543 468888875543
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=4.8e-17 Score=171.08 Aligned_cols=262 Identities=7% Similarity=-0.010 Sum_probs=187.2
Q ss_pred ceEEEee-CCeeEEEECCCCeeeeEEeeecCc-eEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCC
Q 003208 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGI-RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (839)
Q Consensus 36 ~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~ 112 (839)
.+++++. ++.|++||..+++.+..+...... .+.+++|+ |+|+ .++++. .++.|.+||+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-------~dg~---~l~v~~~~~~~v~~~d~~~~----- 66 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-------PGGR---IAYATVNKSESLVKIDLVTG----- 66 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-------TTSS---EEEEEETTTTEEEEEETTTC-----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc-------CCCC---EEEEEeCCCCeEEEEECCCC-----
Confidence 3566666 899999999999998888754321 37899999 8874 444444 4789999998753
Q ss_pred CCCCccccceeeeEecc-C----CCcceEEEEEeeccCCCcEEEEEe------------CCCcEEEEecCCCceEEEEec
Q 003208 113 QYQPETCVNLSLVQSLP-R----LSHWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~----h~~~I~~~~~~~~~~~~~~las~~------------~d~~i~vwd~~~~~~~~~~~~ 175 (839)
+.+..+. + |...+.+++|+| ++++|+++. .++.|.+||+.+++.+..+..
T Consensus 67 ----------~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 67 ----------ETLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp ----------CEEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred ----------CeEeeEEcCCcccccccccceEECC---CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 2333332 1 123577899999 999888886 579999999999888777664
Q ss_pred CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
... ...+.+ ++++.+|+++ ++.|++||+. ..+....+..+
T Consensus 134 ~~~--~~~~~~---s~dg~~l~~~--~~~i~~~d~~---------------------------------~~~~~~~~~~~ 173 (337)
T 1pby_B 134 PRQ--ITMLAW---ARDGSKLYGL--GRDLHVMDPE---------------------------------AGTLVEDKPIQ 173 (337)
T ss_dssp CSS--CCCEEE---CTTSSCEEEE--SSSEEEEETT---------------------------------TTEEEEEECST
T ss_pred CCC--cceeEE---CCCCCEEEEe--CCeEEEEECC---------------------------------CCcEeeeeecc
Confidence 332 223333 5888877777 6899999988 45555445433
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEEcccCccCCCCCceeeeceEeeccccce
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDR------------------------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 311 (839)
.. ...+.|+|+++.++..+.++ .|.+||+.+.+. . . .....+...+
T Consensus 174 ~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----~-~---~~~~~~~~~~ 243 (337)
T 1pby_B 174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-----A-M---REVRIMDVFY 243 (337)
T ss_dssp TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-----E-E---EEEEECSSCE
T ss_pred cc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-----e-E---eecCCCCCce
Confidence 21 11236788887665544332 468999887654 1 1 2445566778
Q ss_pred EEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 312 ~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+++|+ +++++++ ++.|++||+ +++.+..+..+. .+.+++|+|++++|++++.++.|++||+..
T Consensus 244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC--ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 889998 5677777 799999999 677777766543 478999999999999999999999999854
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=2.4e-17 Score=192.42 Aligned_cols=344 Identities=9% Similarity=0.039 Sum_probs=200.9
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeee-eEEeeecC----------------ceEEeEEecccccccCC
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI-RPFQVFHG----------------IRLHGISCNFINCTEGS 82 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~-~~~~~~~~----------------~~v~~i~~~~~~~~~~~ 82 (839)
+..+.|+ . +.++....++ | +||+.+|+.+ ..+..+.. ..|.+++|+ |
T Consensus 28 ~~~~~w~--g-----~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s-------p 91 (706)
T 2z3z_A 28 VVGLQWM--G-----DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA-------G 91 (706)
T ss_dssp CTTCEEE--T-----TEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET-------T
T ss_pred CCCCcCc--C-----CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC-------C
Confidence 4455665 2 3555555566 8 9999999874 44433221 358999999 8
Q ss_pred CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEE
Q 003208 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (839)
Q Consensus 83 ~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vw 162 (839)
|+ .++.+ .++.|++||+.... . ..+..+...+.+++|+| ++++||++ .++.|++|
T Consensus 92 d~----~~~~~-~~~~i~~~d~~~~~---------------~-~~l~~~~~~~~~~~~Sp---dG~~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 92 RG----LVVLF-TQGGLVGFDMLARK---------------V-TYLFDTNEETASLDFSP---VGDRVAYV-RNHNLYIA 146 (706)
T ss_dssp TT----EEEEE-ETTEEEEEETTTTE---------------E-EEEECCTTCCTTCEECT---TSSEEEEE-ETTEEEEE
T ss_pred CC----eEEEE-ECCEEEEEECCCCc---------------e-EEccCCcccccCCcCCC---CCCEEEEE-ECCeEEEE
Confidence 83 44444 56999999987522 2 23345667789999999 99999985 58999999
Q ss_pred ecCC-----CceEEEEecCCcee-------------EEEEeeccCCccceEEEEeecC-CeEEEEEeeccccccCCCCCC
Q 003208 163 DISN-----SSIILEVHSPERCL-------------LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 163 d~~~-----~~~~~~~~~~~~~~-------------~~s~~~~~~~~~~~~l~sg~~d-g~i~vw~~~~~~~~~~~~~~~ 223 (839)
|+.+ ++.......+...+ ..++.+ +|++.+|++++.| ..+..+.+.............
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~---SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW---SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE---CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 9988 76654433332211 123333 7999999988732 111111111000000000000
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEE--ecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcccCccCCCCCc
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDR-----SARIWEVRAEYWKDSDSI 296 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~ 296 (839)
.....+.......+.+|+.. .++..... ..|...+.+++|+|||++|++++.|+ .|++||+.++.. .
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-----~ 297 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLA-TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-----V 297 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETT-TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----E
T ss_pred eCCCCCCCCCeeEEEEEECC-CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----e
Confidence 00011111123344444433 33322222 25778899999999999999988776 899999988632 1
Q ss_pred eeeeceEeecccc---ceEEeEECC----CEEEEEeCCCeEEEEcC--CCceEEEeecccCCceEE-EEEccCCCEEEEE
Q 003208 297 EEVGSSVLYGHNA---RVWDCCLTD----SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR-CLYDSLSSLLVTA 366 (839)
Q Consensus 297 ~~~~~~~~~~h~~---~v~~~~~~~----~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~~~i~~-~~~~~~~~~l~t~ 366 (839)
+.+ ....+.. .+.+++|++ .+++++..|+.+++|.+ +++.+..+..+.. .+.. ++|+|+++.|+.+
T Consensus 298 ~~~---~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 298 RTL---FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-EVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEE---EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS-CEEEEEEECTTSSEEEEE
T ss_pred eEE---EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe-EEEeeeEEcCCCCEEEEE
Confidence 211 1111222 235677854 58888889999999977 5777788877766 5776 7999999877666
Q ss_pred eCC-C----cEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe-cc-
Q 003208 367 GFD-S----AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NH- 439 (839)
Q Consensus 367 ~~d-g----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~- 439 (839)
+.+ + .|..|++.+.....+. +...+..++|+|++..++.+ .+
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~~~~l~-------------------------------~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGKTKDLT-------------------------------PESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCCCEESC-------------------------------CSSSEEEEEECTTSSEEEEEEECS
T ss_pred ecCCCCceEEEEEEEcCCCCceecc-------------------------------CCCceEEEEECCCCCEEEEEecCC
Confidence 554 4 4445554332111110 12347889999999766544 22
Q ss_pred ---ceEEEEEec
Q 003208 440 ---GYLYHTKLC 448 (839)
Q Consensus 440 ---g~i~~~~~~ 448 (839)
+.++.+++.
T Consensus 423 ~~p~~i~l~d~~ 434 (706)
T 2z3z_A 423 TVPRKVTVTNIG 434 (706)
T ss_dssp SCSCEEEEEESS
T ss_pred CCCcEEEEEECC
Confidence 346665543
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=4.7e-17 Score=167.44 Aligned_cols=249 Identities=11% Similarity=0.026 Sum_probs=179.2
Q ss_pred CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeec-cCCCCCCCCCccccc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-ELSPNSQYQPETCVN 121 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~ 121 (839)
++.|++||+.+++...... +.. .|.+++|+ |+| .++++..++.|++||+.. ..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~-~~~-~v~~~~~s-------pdg----~~l~~~~~~~i~~~d~~~~~~------------- 74 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQ-TPE-LFEAPNWS-------PDG----KYLLLNSEGLLYRLSLAGDPS------------- 74 (297)
T ss_dssp CEEEEEEETTTTEEEEEEE-ESS-CCEEEEEC-------TTS----SEEEEEETTEEEEEESSSCCS-------------
T ss_pred ceeEEEEeCCCCceeeecc-CCc-ceEeeEEC-------CCC----CEEEEEcCCeEEEEeCCCCCC-------------
Confidence 6899999999988764443 443 69999999 898 666777799999999975 32
Q ss_pred eeeeEeccCC-CcceEEEEEeeccCCCcEEEEEe--CCCcEEEEec--CCCceEEEEecCCceeEEEEeeccCCccceEE
Q 003208 122 LSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (839)
Q Consensus 122 ~~~~~~~~~h-~~~I~~~~~~~~~~~~~~las~~--~d~~i~vwd~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l 196 (839)
......+| ...|.+++|+| ++++|++++ .++...||.+ .+++ ...+..... ...+.+ ++++..|
T Consensus 75 --~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~---spdg~~l 143 (297)
T 2ojh_A 75 --PEKVDTGFATICNNDHGISP---DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLP--SYWHGW---SPDGKSF 143 (297)
T ss_dssp --CEECCCTTCCCBCSCCEECT---TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSS--EEEEEE---CTTSSEE
T ss_pred --ceEeccccccccccceEECC---CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCC--ccceEE---CCCCCEE
Confidence 22334445 47789999999 999999988 3345555554 4444 333333322 444454 6788877
Q ss_pred E-EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 197 A-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 197 ~-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
+ ++..++.+.+|++.. .......+..|...+.+++|+|++++|+.++
T Consensus 144 ~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDI--------------------------------DSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEEEEETTEEEEEEEET--------------------------------TTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCceEEEEEEC--------------------------------CCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 6 788899999999861 1223445667888999999999999888766
Q ss_pred -CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC-----------CeEEEEcC-CCce-
Q 003208 276 -DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-----------CTCRVWGS-DGKQ- 339 (839)
Q Consensus 276 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-----------g~i~vw~~-~~~~- 339 (839)
.++.+++|++...... . ..+..|...+.+++|+ +++|++++.+ +.|.+||+ .++.
T Consensus 192 ~~~~~~~i~~~~~~~~~----~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSS----V-----ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp CTTSSCEEEEEETTSSC----E-----EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred cCCCCccEEEECCCCCC----c-----EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 5899999998632210 1 2556677889999998 5788877765 56999999 4443
Q ss_pred -EEEeecccCCceEEEEEccCCCEEEEEeCCC
Q 003208 340 -LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (839)
Q Consensus 340 -~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg 370 (839)
+..+..|.. .+.+++|+|+++.|++++.|.
T Consensus 263 ~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred eeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 344446666 588999999999988887653
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=7.5e-17 Score=169.60 Aligned_cols=256 Identities=8% Similarity=0.025 Sum_probs=181.0
Q ss_pred CCcCccccccCCCce------ee---eeeEEEEecCCCCCCCcceE-EEee-CCeeEEEECCCCeeeeEEeeec----Cc
Q 003208 2 GKKDLSEWRLDVGQY------LG---EISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFH----GI 66 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~------~~---~Vt~l~f~~~~~~~~~~~~l-~~g~-~~~v~iwd~~~~~~~~~~~~~~----~~ 66 (839)
.|++|.+||+.+++. .. .+.+++|+ |+ ++++ +++. ++.|.+||+.+++.+..+.... ..
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA--PG----GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC--TT----SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc--CC----CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 578999999988762 22 47889999 98 6555 4444 6899999999999888777533 12
Q ss_pred eEEeEEecccccccCCCccceeeEEEEE------------cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcc
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALF------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~------------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 134 (839)
.+.+++|+ |+|+ .++++. .++.|.+||+.. .+.+..+.. ...
T Consensus 83 ~~~~~~~s-------~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------------~~~~~~~~~-~~~ 136 (337)
T 1pby_B 83 SLFGAALS-------PDGK---TLAIYESPVRLELTHFEVQPTRVALYDAET---------------LSRRKAFEA-PRQ 136 (337)
T ss_dssp CTTCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTT---------------TEEEEEEEC-CSS
T ss_pred cccceEEC-------CCCC---EEEEEecccccccccccccCceEEEEECCC---------------CcEEEEEeC-CCC
Confidence 47789999 8884 444443 469999999875 233444433 345
Q ss_pred eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC--ceeEEEEeeccCCccceEEEEeecCC---------
Q 003208 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYN--------- 203 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~l~sg~~dg--------- 203 (839)
+.+++|+| ++++|+++ ++.|.+||+.+++.+..+..+. ... . .++++..++..+..+
T Consensus 137 ~~~~~~s~---dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~----~---~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 137 ITMLAWAR---DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET----Y---AQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CCCEEECT---TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT----B---CCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred cceeEECC---CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc----e---eCCCccEEeeeccCCCceeeeeec
Confidence 78899999 99988877 6889999999998887765443 222 1 246666555443332
Q ss_pred ---------------eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee-eEEEecCCCCeEEEEEcCC
Q 003208 204 ---------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSC 267 (839)
Q Consensus 204 ---------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~~~~ 267 (839)
.|.+||+. ..+. ...+..+...+.+++|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLE---------------------------------TGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETT---------------------------------TCCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccccccccccccceEEEeCC---------------------------------CCCceEeecCCCCCceeeEEECCC
Confidence 34555554 2222 3334567778899999999
Q ss_pred CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEee
Q 003208 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 268 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
+++++++ ++.|++||+.+.+. .. .+ .....+.+++|+ ++++++++.++.|++||+ +++.+..+.
T Consensus 252 g~~l~~~--~~~v~~~d~~~~~~-----~~-----~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKNAS-----IK-----RV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTEE-----EE-----EE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEe--CCeEEEEECCCCcC-----cc-----ee-cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999888 78999999987654 22 22 223457788998 578888899999999999 777777776
Q ss_pred ccc
Q 003208 345 EHI 347 (839)
Q Consensus 345 ~h~ 347 (839)
.+.
T Consensus 319 ~~~ 321 (337)
T 1pby_B 319 LPG 321 (337)
T ss_dssp CGG
T ss_pred cCC
Confidence 543
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=3e-15 Score=158.01 Aligned_cols=269 Identities=9% Similarity=-0.015 Sum_probs=175.4
Q ss_pred CCeeEEEEC--CCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCc
Q 003208 43 GSQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPE 117 (839)
Q Consensus 43 ~~~v~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~ 117 (839)
++.|.+|++ ++++............+..++|+ ||| .++++.. ++.|.+|++..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s-------pdg----~l~~~~~~~~~~~v~~~~~~~g~--------- 74 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS-------AKD----CLYSVDKEDDEGGIAAWQIDGQT--------- 74 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC-------TTC----EEEEEEEETTEEEEEEEEEETTE---------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc-------cCC----eEEEEEecCCCceEEEEEecCCc---------
Confidence 345666655 45665432222223458889999 988 5554543 5899999997533
Q ss_pred cccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe-CCCcEEEEecCC-Cc--eEEEEecCC--------ceeEEEEe
Q 003208 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISN-SS--IILEVHSPE--------RCLLYSMK 185 (839)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~-~d~~i~vwd~~~-~~--~~~~~~~~~--------~~~~~s~~ 185 (839)
.+.+..+..+...+..++|+| ++++|++++ .++.|.+|++.. +. .+..+.... ...+..+.
T Consensus 75 ----~~~~~~~~~~~~~p~~~a~sp---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 75 ----AHKLNTVVAPGTPPAYVAVDE---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp ----EEEEEEEEEESCCCSEEEEET---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred ----EEEeeeeecCCCCCEEEEECC---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence 455566566777889999999 999888887 679999999963 32 233332211 11234455
Q ss_pred eccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC-CCCeEEEEE
Q 003208 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEW 264 (839)
Q Consensus 186 ~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~ 264 (839)
+ ++++.++++...++.|.+|++.... .......+..+ ...+..++|
T Consensus 148 ~---spdg~l~v~~~~~~~v~~~~~~~~g------------------------------~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 148 L---TPDNRLAVIDLGSDKVYVYNVSDAG------------------------------QLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp E---CTTSCEEEEETTTTEEEEEEECTTS------------------------------CEEEEEEEECCTTCCEEEEEE
T ss_pred E---CCCCcEEEEeCCCCEEEEEEECCCC------------------------------cEEEeeeEEcCCCCCCceEEE
Confidence 4 6888866777778999999987100 11112222222 236788999
Q ss_pred cCCCCEEEE-EeCCCcEEEEEcccCccCCCCCceeeeceEeeccc------cceEEeEEC--CCEE-EEEeCCCeEEEEc
Q 003208 265 SSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN------ARVWDCCLT--DSFI-ITAGEDCTCRVWG 334 (839)
Q Consensus 265 ~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~--~~~l-~s~~~dg~i~vw~ 334 (839)
+|+|+++++ ...++.|++|++...... ..... ...... ..+..++|+ +++| ++...++.|.+|+
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~----~~~~~--~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGA----FTQLG--IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTE----EEEEE--EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCc----eEEee--eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999996665 567889999998752110 11111 111111 457889998 5666 5666789999999
Q ss_pred CC--C--ceEEEeecccCCceEEEEEccCCCEEEEEeCC-CcEEEEecC
Q 003208 335 SD--G--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-SAIKVHQFQ 378 (839)
Q Consensus 335 ~~--~--~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~d-g~i~iw~~~ 378 (839)
+. + +.+..+..+.. .+..++|+|+|++|++++.+ +.|.+|+++
T Consensus 269 ~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 83 3 34445555444 47899999999988888764 899999763
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=8.9e-17 Score=188.24 Aligned_cols=284 Identities=9% Similarity=0.045 Sum_probs=188.3
Q ss_pred CCCcCccccccCCCc-------eee---eeeEEEEecCCCCCCCcceEEEeeC----------CeeEEEECCCCeeeeEE
Q 003208 1 MGKKDLSEWRLDVGQ-------YLG---EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (839)
Q Consensus 1 ~~d~~i~~w~~~~~~-------~~~---~Vt~l~f~~~~~~~~~~~~l~~g~~----------~~v~iwd~~~~~~~~~~ 60 (839)
+.|+++++||+.+++ |.. .|.+++|| || +++|+.+.+ +.|++||+.+++. ..+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S--pD----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS--PD----REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC--TT----SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEEC--CC----CCEEEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence 468899999999876 111 38999999 99 888887763 7889999998875 333
Q ss_pred eee--cCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCc-----
Q 003208 61 QVF--HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH----- 133 (839)
Q Consensus 61 ~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----- 133 (839)
... +...+..++|+ ||| ..|+...++.|++|++..+. .......+..
T Consensus 107 ~~~~~~~~~~~~~~~S-------PdG----~~la~~~~~~i~~~~~~~g~---------------~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWG-------PKG----QQLIFIFENNIYYCAHVGKQ---------------AIRVVSTGKEGVIYN 160 (723)
T ss_dssp CCTTCCSCCCSBCCBC-------SST----TCEEEEETTEEEEESSSSSC---------------CEEEECCCBTTTEEE
T ss_pred cCCccccccccccEEC-------CCC----CEEEEEECCeEEEEECCCCc---------------eEEEecCCCCCceEC
Confidence 322 12237889999 998 56666667899999987532 2222222222
Q ss_pred -------------ceEEEEEeeccCCCcEEEEEeCCC----------------------------------cEEEEecCC
Q 003208 134 -------------WVFDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISN 166 (839)
Q Consensus 134 -------------~I~~~~~~~~~~~~~~las~~~d~----------------------------------~i~vwd~~~ 166 (839)
.+.+++|+| +++.||+++.|+ .|++||+.+
T Consensus 161 g~~~~v~~ee~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSP---DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECT---TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred cccceeEEEEeccCcceEEECC---CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 237899999 999999887543 799999988
Q ss_pred CceEEEEecCC-----ceeEEEEeeccCCccceEEEEeec----CCeEEEEEeeccccccCCCCCCCccCCCCCCCceee
Q 003208 167 SSIILEVHSPE-----RCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (839)
Q Consensus 167 ~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~l~sg~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (839)
++....+..+. ...+.++.+ +|++.+|++... +..|++||+.
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~~~~~~i~~~d~~-------------------------- 288 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKW---ATSTKVAVTWLNRAQNVSILTLCDAT-------------------------- 288 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEE---SSSSEEEEEEEETTSCEEEEEEEETT--------------------------
T ss_pred CceeEEeeCCccCCCccceeEEEEE---eCCCeEEEEEEcCCCCeEEEEEEeCC--------------------------
Confidence 87655555431 334556665 789998877643 3578899987
Q ss_pred EeecccccceeeEEEec-CCCCeE----EEEEcCCCCEEEE--EeCCC------cEEEEE-cccCc---cCCCCCceeee
Q 003208 238 KLQDQQHTAVNLFRLVG-HEGSIF----RIEWSSCGSKLVS--VSDDR------SARIWE-VRAEY---WKDSDSIEEVG 300 (839)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-h~~~V~----~l~~~~~~~~l~s--~s~d~------~i~iwd-~~~~~---~~~~~~~~~~~ 300 (839)
+++....+.. |.+.+. .++|+|||+.|+. ...++ .|.+|| ...+. .
T Consensus 289 -------~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---------- 351 (723)
T 1xfd_A 289 -------TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI---------- 351 (723)
T ss_dssp -------TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC----------
T ss_pred -------CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce----------
Confidence 4444433332 344443 7899999997775 45667 566677 33333 2
Q ss_pred ceEeeccccceEE-eEEC--CCEEEEEeCC---CeEEEEcC--CCc-eEEEeec---ccCCceEEEEEccCCCEEEEEeC
Q 003208 301 SSVLYGHNARVWD-CCLT--DSFIITAGED---CTCRVWGS--DGK-QLKMIKE---HIGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 301 ~~~~~~h~~~v~~-~~~~--~~~l~s~~~d---g~i~vw~~--~~~-~~~~~~~---h~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
..+..+...+.. ++|+ ++.|+..+.+ +.+++|++ .+. ....+.. |.. .+..++|+|+|++++....
T Consensus 352 -~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 352 -QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENC-TYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp -CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSC-CCCEEEECTTSSEEEEECC
T ss_pred -eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCC-CeEEEEECCCCCEEEEEcc
Confidence 123222333443 6887 5677655544 78999987 332 3344443 444 5889999999998776543
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=3.2e-16 Score=178.15 Aligned_cols=267 Identities=12% Similarity=0.001 Sum_probs=188.3
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
+..+|.+++|+ || ++.|+.++ ++.++||++.+++.. .+..++...+..++|+ || + .+++.
T Consensus 20 ~~~~~~~~~~~--~D----G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s-------pd-~---~l~~~ 81 (582)
T 3o4h_A 20 IAVEKYSLQGV--VD----GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG-------VG-R---VILVR 81 (582)
T ss_dssp HHSCEEEEEEE--ET----TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT-------CS-E---EEEEE
T ss_pred hccchheeecC--CC----CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC-------CC-e---EEEEe
Confidence 34679999999 99 77777644 899999999766654 4444443468999999 87 2 44444
Q ss_pred Ec---CcEEEEEEeec--cCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCc--EEEEEeCCCcEEEEecCC
Q 003208 94 FG---EKRVKLFELNF--ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR--SLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 94 ~~---~~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~--~las~~~d~~i~vwd~~~ 166 (839)
.. +...+||.+.. .. ... .+..+. .+...+|+| +++ .+++++. +.+.+||+.+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g--------------~~~-~l~~~~-~~~~~~~s~---dg~~~~~~s~~~-~~~~l~d~~~ 141 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPG--------------EEQ-RLEAVK-PMRILSGVD---TGEAVVFTGATE-DRVALYALDG 141 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTT--------------CCE-ECTTSC-SBEEEEEEE---CSSCEEEEEECS-SCEEEEEEET
T ss_pred ccCCCCcceEEEEEeccCCC--------------ccc-cccCCC-CceeeeeCC---CCCeEEEEecCC-CCceEEEccC
Confidence 43 46678887765 22 111 222222 234568888 765 4444444 4555999998
Q ss_pred CceEEEEecCCceeEEEEeeccCCccceEEEEeecC----CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (839)
++.......+. +++.+ +|+|.+|++++.+ +.|++||+.
T Consensus 142 g~~~~l~~~~~----~~~~~---spDG~~la~~~~~~~~~~~i~~~d~~------------------------------- 183 (582)
T 3o4h_A 142 GGLRELARLPG----FGFVS---DIRGDLIAGLGFFGGGRVSLFTSNLS------------------------------- 183 (582)
T ss_dssp TEEEEEEEESS----CEEEE---EEETTEEEEEEEEETTEEEEEEEETT-------------------------------
T ss_pred CcEEEeecCCC----ceEEE---CCCCCEEEEEEEcCCCCeEEEEEcCC-------------------------------
Confidence 87655544443 33333 5899999988777 789999987
Q ss_pred cccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcccCccCCCCCceeeeceEeeccccceEEeE-----
Q 003208 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC----- 315 (839)
Q Consensus 243 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----- 315 (839)
.++ ...+.+|.+.+..++|+|||++|+++..++ .|++||+.+++. ..+.+|...+..+.
T Consensus 184 --~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 184 --SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-----------EDLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp --TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-----------EECCCSCSHHHHHCCSEEE
T ss_pred --CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-----------EEccCCCcChhhhhhcccc
Confidence 333 336778999999999999999999888888 899999987655 13445666666666
Q ss_pred ---EC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCc---EEEEecC
Q 003208 316 ---LT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA---IKVHQFQ 378 (839)
Q Consensus 316 ---~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~---i~iw~~~ 378 (839)
|+ +..+++++.|+.+++|++ ++... ...+ .+.+++|+ +++++++++.+.. +.+|+..
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~---~~~~-~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID-GERVE---APQG-NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET-TEEEC---CCSS-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE-CCeec---cCCC-ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 88 568899999999999999 76554 2334 58899999 9999888887744 5566554
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.74 E-value=1.5e-15 Score=160.77 Aligned_cols=239 Identities=8% Similarity=-0.010 Sum_probs=171.8
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEc-------CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEE
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (839)
.+.+++++ |+++ .++++.. ++.|.+||..+ ++.+..+.. ...+.+++
T Consensus 42 ~~~~~~~s-------~dg~---~l~~~~~~~~~~~~~~~v~~~d~~~---------------~~~~~~~~~-~~~~~~~~ 95 (353)
T 3vgz_A 42 GAYEMAYS-------QQEN---ALWLATSQSRKLDKGGVVYRLDPVT---------------LEVTQAIHN-DLKPFGAT 95 (353)
T ss_dssp SEEEEEEE-------TTTT---EEEEEECCCTTTEESEEEEEECTTT---------------CCEEEEEEE-SSCCCSEE
T ss_pred CccceEEC-------CCCC---EEEEEcCCCcCCCCCccEEEEcCCC---------------CeEEEEEec-CCCcceEE
Confidence 48899999 8874 4444442 57899999875 334444432 23477899
Q ss_pred EeeccCCCcEEE-EEeCCCcEEEEecCCCceEEEEecCCce--------eEEEEeeccCCccceEEEEee--cCCeEEEE
Q 003208 140 FLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERC--------LLYSMKLWGDNLEALRIASGT--IYNEIIVW 208 (839)
Q Consensus 140 ~~~~~~~~~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~l~sg~--~dg~i~vw 208 (839)
|+| ++++++ +...++.|.+||..+++.+..+..+... ....+.+ ++++.++++++ .++.|.+|
T Consensus 96 ~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 96 INN---TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA---DDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp EET---TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE---ETTTTEEEEEEESSSCEEEEE
T ss_pred ECC---CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE---CCCCCEEEEEecCCCceEEEE
Confidence 999 988554 4555799999999999988877653311 1334444 57777776665 47889999
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccC
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~ 288 (839)
|.. +.+.+..+..+...+.+++|+|+++++++++.++.|.+||..+.
T Consensus 170 d~~---------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 170 DGG---------------------------------NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp ETT---------------------------------TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred cCC---------------------------------CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 988 66666666656667889999999999999999999999999886
Q ss_pred ccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEe-CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEE
Q 003208 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~ 364 (839)
+. ...+. ....++...+..++|+ +++++.++ .++.|.+||. +++.+..+..... ..++|+|+++.++
T Consensus 217 ~~-----~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 217 KI-----LSRKK-LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAY 287 (353)
T ss_dssp EE-----EEEEE-CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEE
T ss_pred eE-----EEEEE-cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEE
Confidence 55 22221 0112345567888998 56665555 4599999999 7787777765432 4689999999665
Q ss_pred EEe-CCCcEEEEecCC
Q 003208 365 TAG-FDSAIKVHQFQA 379 (839)
Q Consensus 365 t~~-~dg~i~iw~~~~ 379 (839)
+++ .++.|.+||...
T Consensus 288 v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEETTTTEEEEEETTT
T ss_pred EEECCCCeEEEEECCC
Confidence 555 689999999854
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=1.2e-15 Score=160.02 Aligned_cols=264 Identities=11% Similarity=0.074 Sum_probs=172.7
Q ss_pred CCcCccccccCCCce-------eeeeeEEEEecCCCCCCCcceEEE-ee-CCeeEEEECCCCee-eeEEeeecCceEEeE
Q 003208 2 GKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTL-IRPFQVFHGIRLHGI 71 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~-------~~~Vt~l~f~~~~~~~~~~~~l~~-g~-~~~v~iwd~~~~~~-~~~~~~~~~~~v~~i 71 (839)
.+++|++||+.+++. ..++ +++|+ |+ ++++++ +. ++.|.+||..+++. ...+.... .+..++
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s--~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~ 89 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV-DTAIT--SD----CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ-SSMADV 89 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE-EEEEC--SS----SCEEEEEESTTCEEEEEECSSSSCEEEEEEECS-SCCCCE
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc-eEEEc--CC----CCEEEEEeCCCCeEEEEECCCCceeEEecccCC-CCccce
Confidence 578999999998762 3445 99999 99 665554 44 68999999999987 66666543 344559
Q ss_pred EecccccccCCCccceeeEEEEEcCc----EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCC
Q 003208 72 SCNFINCTEGSVSTRVTFEVALFGEK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (839)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (839)
+|+ |+|+ .++ +..+. .|.+||+.. .+.+..+..+ ....+++|+| ++
T Consensus 90 ~~s-------~dg~---~l~-~~~~~~~~~~i~v~d~~~---------------~~~~~~~~~~-~~~~~~~~sp---dg 139 (331)
T 3u4y_A 90 DIT-------PDDQ---FAV-TVTGLNHPFNMQSYSFLK---------------NKFISTIPIP-YDAVGIAISP---NG 139 (331)
T ss_dssp EEC-------TTSS---EEE-ECCCSSSSCEEEEEETTT---------------TEEEEEEECC-TTEEEEEECT---TS
T ss_pred EEC-------CCCC---EEE-EecCCCCcccEEEEECCC---------------CCeEEEEECC-CCccceEECC---CC
Confidence 999 8883 344 54433 999999875 3344455443 3468999999 98
Q ss_pred cEEE-EEeCCCc-EEEEecCCCceEEEE---ecCCceeEEEEeeccCCccceEEE-EeecCCeEEEEEeeccccccCCCC
Q 003208 148 RSLA-IGCSDNS-IRVWDISNSSIILEV---HSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNS 221 (839)
Q Consensus 148 ~~la-s~~~d~~-i~vwd~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~l~-sg~~dg~i~vw~~~~~~~~~~~~~ 221 (839)
++|+ +...++. |.+|++.....+... ..........+.+ ++++.+++ ++..++.|.+||+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~v~v~d~~---------- 206 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF---TPDGNFAFVANLIGNSIGILETQ---------- 206 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE---CTTSSEEEEEETTTTEEEEEECS----------
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE---CCCCCEEEEEeCCCCeEEEEECC----------
Confidence 7555 4455688 999998754333111 0111222344554 68887554 45568999999987
Q ss_pred CCCccCCCCCCCceeeEeeccccccee---eEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCce
Q 003208 222 PEGNHAHGSSSDFKCFKLQDQQHTAVN---LFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~ 297 (839)
..+. +..+.. ...+..++|+|++++++.++ .++.|.+||+.+++. +
T Consensus 207 -----------------------~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~------~ 256 (331)
T 3u4y_A 207 -----------------------NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL------S 256 (331)
T ss_dssp -----------------------STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE------E
T ss_pred -----------------------CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce------e
Confidence 3333 555553 36778999999999776654 578899999987654 1
Q ss_pred eeeceE--eeccccc---eEEeEEC--CCEEEE-EeCCCeEEEEcCCCceEEEeecc
Q 003208 298 EVGSSV--LYGHNAR---VWDCCLT--DSFIIT-AGEDCTCRVWGSDGKQLKMIKEH 346 (839)
Q Consensus 298 ~~~~~~--~~~h~~~---v~~~~~~--~~~l~s-~~~dg~i~vw~~~~~~~~~~~~h 346 (839)
.+.... +..+... ...++|+ +++++. +..++.|.+||+..+.+..+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTC
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecc
Confidence 111001 1111222 2447888 566654 45567999999976666555443
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.73 E-value=1.5e-14 Score=152.64 Aligned_cols=262 Identities=11% Similarity=0.097 Sum_probs=169.1
Q ss_pred CcCccccccCC--Cc--------eeeeeeEEEEecCCCCCCCcceEEEee---CCeeEEEECCCCe--eeeEEeeecCce
Q 003208 3 KKDLSEWRLDV--GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGT--LIRPFQVFHGIR 67 (839)
Q Consensus 3 d~~i~~w~~~~--~~--------~~~~Vt~l~f~~~~~~~~~~~~l~~g~---~~~v~iwd~~~~~--~~~~~~~~~~~~ 67 (839)
++.+.+|++.. +. +...+..++|+ || +++++++. ++.|++||+.+++ .+..+..+ ...
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s--pd----g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~ 87 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS--AK----DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP-GTP 87 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC--TT----CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-SCC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc--cC----CeEEEEEecCCCceEEEEEecCCcEEEeeeeecC-CCC
Confidence 45567776654 33 23456789999 99 66555554 4799999998776 33343333 346
Q ss_pred EEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC---------CCcceEE
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR---------LSHWVFD 137 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------h~~~I~~ 137 (839)
+..++|+ |||+ .++++. .++.|.+|++.... ....+..+.. +...+.+
T Consensus 88 p~~~a~s-------pdg~---~l~~~~~~~~~v~v~~~~~~g------------~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 88 PAYVAVD-------EARQ---LVYSANYHKGTAEVMKIAADG------------ALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp CSEEEEE-------TTTT---EEEEEETTTTEEEEEEECTTS------------CEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred CEEEEEC-------CCCC---EEEEEeCCCCEEEEEEeCCCC------------CeeecceeecCCCCCCccccCCCceE
Confidence 8899999 8884 455555 57999999996422 0222332211 2345889
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecC-CCceEE--EEecCCceeEEEEeeccCCccceEEEE-eecCCeEEEEEeecc
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWE 213 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~-~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~dg~i~vw~~~~~ 213 (839)
++|+| +++++++...++.|.+|++. +++... .+..+.......+.+ +|++.++++ +..++.|.+|++...
T Consensus 146 ~~~sp---dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 146 TDLTP---DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF---SPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEECT---TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEECC---CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE---CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999 88866666678899999998 454322 222222222334554 688885555 567899999998710
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC------CCeEEEEEcCCCCEE-EEEeCCCcEEEEEcc
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE------GSIFRIEWSSCGSKL-VSVSDDRSARIWEVR 286 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~l-~s~s~d~~i~iwd~~ 286 (839)
. .....+..+.... ..+..++|+|+|++| ++...++.|.+|++.
T Consensus 220 ~-----------------------------g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 220 T-----------------------------GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp T-----------------------------TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred C-----------------------------CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 0 0111222222222 458899999999987 556678999999997
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCC-CeEEEEcC
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-g~i~vw~~ 335 (839)
.... .+.+. ....+...+..++|+ +++|++++.+ +.+.+|++
T Consensus 271 ~~g~-----~~~~~--~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 271 ADGH-----LTLIQ--QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp GGGC-----EEEEE--EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCc-----EEEeE--EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4322 23232 444555668899998 5677777754 89999944
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=1.9e-15 Score=163.57 Aligned_cols=159 Identities=11% Similarity=0.000 Sum_probs=117.2
Q ss_pred cCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEEcccCccCCC---CCceeeeceEeeccccceEEeEEC---CCEEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLV----SVSDDRSARIWEVRAEYWKDS---DSIEEVGSSVLYGHNARVWDCCLT---DSFIIT 323 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~----s~s~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s 323 (839)
.|...|.+++|+|++++|+ +++.|+.|++||+.+...... ..+..+ ..+.+|...|.+++|+ +.+|++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEE
Confidence 4678899999999999999 788999999999976511000 001112 2556799999999998 468999
Q ss_pred EeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEE
Q 003208 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (839)
++.||+|++||+ .+..+.....|.. .|.+++|+|+|++|++|+.||.|++||+++.....+..+.
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~------------- 233 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPSTV-AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP------------- 233 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECGGG-CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCT-------------
T ss_pred EECCCeEEEEEcCCCcceeeccCCCC-ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCc-------------
Confidence 999999999999 5656656666776 6999999999999999999999999998642222111110
Q ss_pred eecCCCccceeeccCCCcceEEEEEecCCeEEEEec
Q 003208 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (839)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 438 (839)
. ....+...+.+++|++++.++++..
T Consensus 234 -----~-----~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 234 -----F-----YESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp -----T-----CCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred -----c-----cCCCCceeEEEEEEecCceEEEEEc
Confidence 0 0011223689999999888776543
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=2.6e-15 Score=170.72 Aligned_cols=231 Identities=11% Similarity=-0.022 Sum_probs=160.9
Q ss_pred ecCceEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC-cceEEEEE
Q 003208 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCF 140 (839)
Q Consensus 63 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~ 140 (839)
....+|.+++|+ |||+ .++.++. +++++||+++. .+. ..+..|. ..+..++|
T Consensus 19 ~~~~~~~~~~~~-------~DG~---~la~~s~~~g~~~lw~~~~---------------g~~-~~lt~~~~~~~~~~~~ 72 (582)
T 3o4h_A 19 LIAVEKYSLQGV-------VDGD---KLLVVGFSEGSVNAYLYDG---------------GET-VKLNREPINSVLDPHY 72 (582)
T ss_dssp HHHSCEEEEEEE-------ETTT---EEEEEEEETTEEEEEEEET---------------TEE-EECCSSCCSEECEECT
T ss_pred HhccchheeecC-------CCCC---eEEEEEccCCceeEEEEcC---------------CCc-EeeecccccccccccC
Confidence 334579999999 9984 4444444 89999999853 233 3344454 68999999
Q ss_pred eeccCCCcEEEEEeC---CCcEEEEecCC---CceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccc
Q 003208 141 LKVCNGNRSLAIGCS---DNSIRVWDISN---SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (839)
Q Consensus 141 ~~~~~~~~~las~~~---d~~i~vwd~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~ 214 (839)
+| + +++++++. +...++|.+.. +... .+.........++. .+.++..++++..+ .+.+||+.
T Consensus 73 sp---d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s---~dg~~~~~~s~~~~-~~~l~d~~--- 140 (582)
T 3o4h_A 73 GV---G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGV---DTGEAVVFTGATED-RVALYALD--- 140 (582)
T ss_dssp TC---S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEE---ECSSCEEEEEECSS-CEEEEEEE---
T ss_pred CC---C-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeC---CCCCeEEEEecCCC-CceEEEcc---
Confidence 99 8 77777765 45566665533 2222 33322222222221 13333455555544 45599998
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcccCcc
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWEVRAEYW 290 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----~~i~iwd~~~~~~ 290 (839)
+++.......+ . .+++|+|||++|++++.| +.|++||+.+++.
T Consensus 141 ------------------------------~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 141 ------------------------------GGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp ------------------------------TTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred ------------------------------CCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 44433333333 3 789999999999988877 7899999988765
Q ss_pred CCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC--eEEEEcC-CCceEEEeecccCCceEEEE--------Ec
Q 003208 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC--TCRVWGS-DGKQLKMIKEHIGRGIWRCL--------YD 357 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg--~i~vw~~-~~~~~~~~~~h~~~~i~~~~--------~~ 357 (839)
..+..|...+..++|+ ++.|+++..++ .|++||+ .++.. .+..|.. .+..++ |+
T Consensus 188 -----------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 188 -----------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYL 254 (582)
T ss_dssp -----------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEEC
T ss_pred -----------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEc
Confidence 3667788889999999 57888888888 8999999 55555 6666655 466666 99
Q ss_pred cCCCEEEEEeCCCcEEEEec
Q 003208 358 SLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~ 377 (839)
|||.++++++.|+.+++|++
T Consensus 255 pdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 255 PDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TTSCEEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEcCCcEEEEEE
Confidence 99999999999999999998
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=1.1e-13 Score=146.77 Aligned_cols=285 Identities=11% Similarity=0.074 Sum_probs=174.3
Q ss_pred cceEEEee-----CCeeEEEEC--CCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC----cEEEEEE
Q 003208 35 LPFLLAGS-----GSQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFE 103 (839)
Q Consensus 35 ~~~l~~g~-----~~~v~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~----~~i~iw~ 103 (839)
..+++.|. ++.|.+|++ ++|++...... +...+..++|+ |||+ .++++..+ +.|.+|+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~s-------pdg~---~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPS-------ADGK---FVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEEC-------TTSS---EEEEEECCSSTTCEEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEEC-------CCCC---EEEEEEccCCCCCcEEEEE
Confidence 45666654 367888865 55665443333 44468889999 8884 45555543 7999999
Q ss_pred eeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe-CCCcEEEEecCCCceEEE----Ee--cC
Q 003208 104 LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILE----VH--SP 176 (839)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~-~d~~i~vwd~~~~~~~~~----~~--~~ 176 (839)
++.... ..+.+.....+......+++ ++++|++++ .++.|.+|++.....+.. .. ..
T Consensus 82 ~~~~~g-----------~~~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 82 FDKEKG-----------TLHLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp EETTTT-----------EEEEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred EeCCCC-----------cEEEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 986320 13445555545555666666 455565555 688999999975432211 11 10
Q ss_pred -------CceeEEEEeeccCCccceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCcee-eEeecccccce
Q 003208 177 -------ERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC-FKLQDQQHTAV 247 (839)
Q Consensus 177 -------~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 247 (839)
......++.+ +|++.+|+++ ..++.|.+|++......... . +.. ...
T Consensus 146 ~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~----------------~~l~~-----~~~ 201 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRI---TPDGKYLLADDLGTDQIHKFNINPNANADNK----------------EKFLT-----KGT 201 (361)
T ss_dssp CSCTTTCSSCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTCCTTTC----------------CCCEE-----EEE
T ss_pred CCCccccCCCcceEEEE---CCCCCEEEEEeCCCCEEEEEEEcCCCCcccc----------------cceee-----ccc
Confidence 0111234554 6889866554 45899999998721100000 0 000 000
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeec-eEeeccccceEEeEEC--CCEEEE
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIIT 323 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~--~~~l~s 323 (839)
.......+...+..++|+|+++++++++ .++.|.+|++.++.. +.+.. .....+...+..++|+ +++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML------DEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE------EEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce------EEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 0111223455678999999999887777 689999999986533 22211 1222334556889998 577766
Q ss_pred EeC--CCeEEEEcCC---Cc--eEEEeecccCCceEEEEEccCCCEEEEEe-CCCcEEEEecC
Q 003208 324 AGE--DCTCRVWGSD---GK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (839)
Q Consensus 324 ~~~--dg~i~vw~~~---~~--~~~~~~~h~~~~i~~~~~~~~~~~l~t~~-~dg~i~iw~~~ 378 (839)
+.. ++.|.+|+++ ++ .+..+.. .. .+..++|+|+|++|++++ .++.|.+|+++
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~-~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GI-HPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC-SS-CCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC-CCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 655 4899999983 34 3334443 22 578999999999888887 57899998764
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=9.2e-16 Score=179.35 Aligned_cols=308 Identities=8% Similarity=0.012 Sum_probs=189.3
Q ss_pred eEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecC--ceEEeEEecccccccCCCccceeeEEEEEc---
Q 003208 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSVSTRVTFEVALFG--- 95 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~--- 95 (839)
..++|+ || +.+++++.++.|++||+.+++....+..+.. ..+.+++|| |||+ .++.++.
T Consensus 19 ~~~~~s--~d----g~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S-------pDg~---~la~~~~~~~ 82 (719)
T 1z68_A 19 FFPNWI--SG----QEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS-------PDRQ---FVYLESDYSK 82 (719)
T ss_dssp CCCEES--SS----SEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC-------TTSS---EEEEEEEEEE
T ss_pred CccEEC--CC----CeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEEC-------CCCC---eEEEEecCce
Confidence 478999 99 6788887799999999999987666654321 138899999 9994 3333333
Q ss_pred ------CcEEEEEEeeccCCCCCCCCCccccceeee--EeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 96 ------EKRVKLFELNFELSPNSQYQPETCVNLSLV--QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 96 ------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
++.|++||++.+. .+ ..+ ...+..++|+| +|+.||.+. ++.|++||+.++
T Consensus 83 ~~~~s~~~~i~~~d~~~g~---------------~~~~~~l---~~~~~~~~~SP---DG~~la~~~-~~~i~~~~~~~g 140 (719)
T 1z68_A 83 LWRYSYTATYYIYDLSNGE---------------FVRGNEL---PRPIQYLCWSP---VGSKLAYVY-QNNIYLKQRPGD 140 (719)
T ss_dssp CSSSCEEEEEEEEETTTTE---------------ECCSSCC---CSSBCCEEECS---STTCEEEEE-TTEEEEESSTTS
T ss_pred eEEeecceEEEEEECCCCc---------------cccceec---CcccccceECC---CCCEEEEEE-CCeEEEEeCCCC
Confidence 5899999987532 11 112 24688999999 999999886 789999999888
Q ss_pred ceEEEEecCCceeE-----------------EEEeeccCCccceEEEEeecC-CeEEEEEeeccccccCCC-CCCCccCC
Q 003208 168 SIILEVHSPERCLL-----------------YSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLN-SPEGNHAH 228 (839)
Q Consensus 168 ~~~~~~~~~~~~~~-----------------~s~~~~~~~~~~~~l~sg~~d-g~i~vw~~~~~~~~~~~~-~~~~~~~~ 228 (839)
+............+ .++.+ +|++..|++++.| +.+.+|.+.......... ........
T Consensus 141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w---SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW---SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE---CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CcEEEecCCCcCCeEcccccceeeeecccCcccEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 76543322221111 13444 7999999998765 445555443111000000 00001111
Q ss_pred CCCCCceeeEeecccccceee--------EEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE----cccCccCC
Q 003208 229 GSSSDFKCFKLQDQQHTAVNL--------FRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWE----VRAEYWKD 292 (839)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~V~~l~~~~~~~~l~s~s~d----~~i~iwd----~~~~~~~~ 292 (839)
+.......+.+|+.. .++.. ..+.+|...+..++|+||++.+++.... ..|++|| +.+++.
T Consensus 218 g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-- 294 (719)
T 1z68_A 218 GAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-- 294 (719)
T ss_dssp TSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC--
T ss_pred CCCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce--
Confidence 222234456666654 22221 1234688899999999998776664432 2488888 665543
Q ss_pred CCCceeeeceEeeccccceE-----EeEEC--CCEEE--EEeCCC--eEEEEcCCCceEEEeecccCCceEEEEEccCCC
Q 003208 293 SDSIEEVGSSVLYGHNARVW-----DCCLT--DSFII--TAGEDC--TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~v~-----~~~~~--~~~l~--s~~~dg--~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
..... ....+|...+. .+.|+ ++.++ +...+| .|.+|++.+.....+..+.. .+..+.+. +++
T Consensus 295 ---~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~-~v~~~~~~-d~~ 368 (719)
T 1z68_A 295 ---PKTQE-HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKW-EAINIFRV-TQD 368 (719)
T ss_dssp ---CGGGE-EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSS-CEEEEEEE-CSS
T ss_pred ---EEEEe-cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCce-EEEEEEEE-eCC
Confidence 11000 00145666666 77888 44333 444555 56777874444556655554 47777777 777
Q ss_pred EEEEEeCC-----CcEEEEecC
Q 003208 362 LLVTAGFD-----SAIKVHQFQ 378 (839)
Q Consensus 362 ~l~t~~~d-----g~i~iw~~~ 378 (839)
.|+..+.+ +..++|.+.
T Consensus 369 ~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEEecCCCCCceEEEEEEe
Confidence 77666654 888999874
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.68 E-value=1.8e-15 Score=163.83 Aligned_cols=223 Identities=11% Similarity=0.089 Sum_probs=151.8
Q ss_pred cCccccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe----------eeeE----EeeecCceEE
Q 003208 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT----------LIRP----FQVFHGIRLH 69 (839)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~----------~~~~----~~~~~~~~v~ 69 (839)
+.+++|+.........+.+|+++ ++ +.+++++....++||+..+.. .+.. ........|.
T Consensus 23 ~~vri~~~~~~~~~~~~n~lavs--~~----~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPEELPKERSSLLAVS--NK----YGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCSSCCCSCCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCccccCCCCccEEEEe--cC----CCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 45778875433344568999999 87 778888774449998753210 0110 1112234699
Q ss_pred eEEecccccccCCCccceeeEEE----E-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc
Q 003208 70 GISCNFINCTEGSVSTRVTFEVA----L-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (839)
Q Consensus 70 ~i~~~~~~~~~~~~~~~~~~~l~----~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (839)
+++|+ |+| .+|+ + +.|+.|+|||+......... ..........+.+|.+.|.+++|+|
T Consensus 97 ~l~~s-------pdg----~~lav~~~sgs~d~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~~p-- 159 (434)
T 2oit_A 97 HLALS-------CDN----LTLSACMMSSEYGSIIAFFDVRTFSNEAKQ----QKRPFAYHKLLKDAGGMVIDMKWNP-- 159 (434)
T ss_dssp EEEEC-------TTS----CEEEEEEEETTTEEEEEEEEHHHHHCTTCS----SCCCSEEEECCCSGGGSEEEEEECS--
T ss_pred EEEEc-------CCC----CEEEEEEeccCCCceEEEEEccccccCCcC----CcceeeeeeccCCCCCceEEEEECC--
Confidence 99999 888 4555 2 34899999999753100000 0001234567788999999999999
Q ss_pred CC-CcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCC
Q 003208 145 NG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (839)
Q Consensus 145 ~~-~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~ 223 (839)
+ +.+||+++.|++|++||++++..+.....+ ...+.++++ ++++.+|++|+.||.|++||.+
T Consensus 160 -~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~w---spdg~~lasgs~dg~v~iwd~~------------ 222 (434)
T 2oit_A 160 -TVPSMVAVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCW---SPKGKQLAVGKQNGTVVQYLPT------------ 222 (434)
T ss_dssp -SCTTEEEEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEE---CTTSSCEEEEETTSCEEEECTT------------
T ss_pred -CCCCEEEEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEE---cCCCCEEEEEcCCCcEEEEccC------------
Confidence 6 789999999999999999988665544433 334667776 6889999999999999999976
Q ss_pred CccCCCCCCCceeeEeecccccceeeEEEe-------cCCCCeEEEEEcCCCCEEEEE-eCCC------cEEEEEcccC
Q 003208 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSV-SDDR------SARIWEVRAE 288 (839)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~-s~d~------~i~iwd~~~~ 288 (839)
......+. .|...|.+++|++++.++++. ..|| .+++|++...
T Consensus 223 ----------------------~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 223 ----------------------LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ----------------------CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ----------------------CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 11122222 234589999999988777553 3443 3899999764
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.67 E-value=7.9e-15 Score=154.89 Aligned_cols=271 Identities=8% Similarity=0.040 Sum_probs=169.9
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cCcE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKR 98 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 98 (839)
|.++++ ++ +++++++. ++.|++||..+++.+.++.......+..++|+ |+|+ .++++. .++.
T Consensus 3 ~g~~~~--~~----~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-------~dg~---~~~v~~~~~~~ 66 (349)
T 1jmx_B 3 TGPALK--AG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-------PDNR---TAYVLNNHYGD 66 (349)
T ss_dssp -CCCCC--TT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-------TTSS---EEEEEETTTTE
T ss_pred cccccc--CC----CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC-------CCCC---EEEEEeCCCCc
Confidence 345666 65 67777766 89999999999999888876542247889999 8874 444444 5799
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccC-C-----CcceEEEEEeeccCCCcEEEEEeCC------------CcEE
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPR-L-----SHWVFDVCFLKVCNGNRSLAIGCSD------------NSIR 160 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~I~~~~~~~~~~~~~~las~~~d------------~~i~ 160 (839)
|.+||+.+. +.+..+.. + ...+.+++|+| ++++|++++.+ +.|.
T Consensus 67 i~~~d~~t~---------------~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~i~ 128 (349)
T 1jmx_B 67 IYGIDLDTC---------------KNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRLNDHYVVKPPRLE 128 (349)
T ss_dssp EEEEETTTT---------------EEEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred EEEEeCCCC---------------cEEEEEEcccccccccccccceEECC---CCCEEEEEcccccccccccccCCCeEE
Confidence 999998752 33333332 2 23478899999 99999988865 8999
Q ss_pred EEecCCCce---EEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCC-----CccCC----
Q 003208 161 VWDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE-----GNHAH---- 228 (839)
Q Consensus 161 vwd~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~---- 228 (839)
+||+.+++. +.....+.. +.++.+ ++++. +++++ +.|.+||+.+++......... ...++
T Consensus 129 ~~d~~~~~~~~~~~~~~~~~~--~~~~~~---s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 129 VFSTADGLEAKPVRTFPMPRQ--VYLMRA---ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp EEEGGGGGGBCCSEEEECCSS--CCCEEE---CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred EEECCCccccceeeeccCCCc--ccceeE---CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceee
Confidence 999987433 333333332 233333 57888 55543 449999987554322111000 00000
Q ss_pred ---CCC-C---C------------------ce-eeEeecccccceeeEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 003208 229 ---GSS-S---D------------------FK-CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSAR 281 (839)
Q Consensus 229 ---~~~-~---~------------------~~-~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~ 281 (839)
... . . .. ....++..........+..+...+.+++|+| ++++++++ ++.|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~ 278 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA 278 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence 000 0 0 00 0000111111111222334556788999999 99999888 88999
Q ss_pred EEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecc
Q 003208 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (839)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h 346 (839)
+||+.+.+. .+ .+ .....+.+++|+ +++|++++.++.|++||. +++.+..+...
T Consensus 279 ~~d~~~~~~-----~~-----~~-~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 279 KYDLKQRKL-----IK-----AA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEETTTTEE-----EE-----EE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEECccCeE-----EE-----EE-cCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999988654 22 22 223456788998 567778888999999999 67777776654
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.65 E-value=5e-15 Score=173.09 Aligned_cols=301 Identities=11% Similarity=0.056 Sum_probs=189.0
Q ss_pred CCcCccccccCCCce-------ee---eeeEEEEecCCCCCCCcceEEEee----------CCeeEEEECCCCeeeeEEe
Q 003208 2 GKKDLSEWRLDVGQY-------LG---EISALCFVHLPSHLSSLPFLLAGS----------GSQVLLYDLEAGTLIRPFQ 61 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~-------~~---~Vt~l~f~~~~~~~~~~~~l~~g~----------~~~v~iwd~~~~~~~~~~~ 61 (839)
.|++|++||+.+++. .. .|.+++|| || +++|+.+. ++.|++||+++++.+...+
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S--pD----g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS--PD----RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEEC--CC----CCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 578999999998761 11 28899999 99 78777665 3899999999988732112
Q ss_pred eecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce------
Q 003208 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV------ 135 (839)
Q Consensus 62 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I------ 135 (839)
. . ..+..++|| ||| ..|+...++.|++|++..+... .... .......+.+|.++|
T Consensus 108 l-~-~~~~~~~~S-------PDG----~~la~~~~~~i~~~~~~~g~~~--~l~~----~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 108 L-P-RPIQYLCWS-------PVG----SKLAYVYQNNIYLKQRPGDPPF--QITF----NGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp C-C-SSBCCEEEC-------SST----TCEEEEETTEEEEESSTTSCCE--ECCC----CCBTTTEEESSCCHHHHHHTT
T ss_pred c-C-cccccceEC-------CCC----CEEEEEECCeEEEEeCCCCCcE--EEec----CCCcCCeEcccccceeeeecc
Confidence 1 1 248889999 999 5666667899999998753300 0000 000001123444444
Q ss_pred ---EEEEEeeccCCCcEEEEEeCCC----------------------------------cEEEEecCCCceE--EEEec-
Q 003208 136 ---FDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISNSSII--LEVHS- 175 (839)
Q Consensus 136 ---~~~~~~~~~~~~~~las~~~d~----------------------------------~i~vwd~~~~~~~--~~~~~- 175 (839)
.+++|+| +|++||+++.|. .|++||+.+++.. ..+..
T Consensus 169 ~~~~~~~wSP---DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 169 ATKYALWWSP---NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp CSSCCEEECT---TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred cCcccEEECC---CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 5899999 999999987652 7889999887642 12211
Q ss_pred ----CCceeEEEEeeccCCccceEEEEeecC----CeEEEEE----eeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 176 ----PERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWK----VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 176 ----~~~~~~~s~~~~~~~~~~~~l~sg~~d----g~i~vw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
.....+.++.+ +|++.++++.... ..|.+|| +.
T Consensus 246 ~~~~~~~~~~~~~~~---SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------------------- 290 (719)
T 1z68_A 246 AMIASSDYYFSWLTW---VTDERVCLQWLKRVQNVSVLSICDFREDWQ-------------------------------- 290 (719)
T ss_dssp HHHHTSCEEEEEEEE---SSSSEEEEEEEESSTTEEEEEEEEECSSSS--------------------------------
T ss_pred ccCCCCcceEEEeEE---eCCCeEEEEEeccccCeEEEEEEcccCCCC--------------------------------
Confidence 12334556665 6788777774432 2488888 54
Q ss_pred ccceeeEEE----ecCCCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEEcccCccCCCCCceeeeceEeeccccc
Q 003208 244 HTAVNLFRL----VGHEGSIF-----RIEWSSCGSKLVS--VSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (839)
Q Consensus 244 ~~~~~~~~~----~~h~~~V~-----~l~~~~~~~~l~s--~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (839)
+++....+ .+|.+.+. .+.|+|+|+.|+. ...++ .|.+||+.++.. ..+..+...
T Consensus 291 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----------~~lt~~~~~ 358 (719)
T 1z68_A 291 -TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----------IQITSGKWE 358 (719)
T ss_dssp -SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----------EECSCSSSC
T ss_pred -CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----------EecccCceE
Confidence 22222222 46777776 8899999986554 44555 466677665443 134444445
Q ss_pred eEEeEE-CCCEEEEEeCC-----CeEEEEcCC---Cc-eEEEeec----ccCCceEEEEEccCCCEEEE-EeCC--CcEE
Q 003208 311 VWDCCL-TDSFIITAGED-----CTCRVWGSD---GK-QLKMIKE----HIGRGIWRCLYDSLSSLLVT-AGFD--SAIK 373 (839)
Q Consensus 311 v~~~~~-~~~~l~s~~~d-----g~i~vw~~~---~~-~~~~~~~----h~~~~i~~~~~~~~~~~l~t-~~~d--g~i~ 373 (839)
+..+.+ .++.++..+.+ +..++|.++ +. ....+.. +.. .+..+.|+|++++++. ++.+ ..+.
T Consensus 359 v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~~ 437 (719)
T 1z68_A 359 AINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC-QYYTASFSDYAKYYALVCYGPGIPIST 437 (719)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB-CBEEEEECGGGSSEEEEECCBSSCEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC-ceEEEEECCCCCEEEEEcCCCCCCeEE
Confidence 555444 45666655554 788899872 32 2233332 434 4788999999876654 4433 4678
Q ss_pred EEecC
Q 003208 374 VHQFQ 378 (839)
Q Consensus 374 iw~~~ 378 (839)
+|++.
T Consensus 438 l~d~~ 442 (719)
T 1z68_A 438 LHDGR 442 (719)
T ss_dssp EECSS
T ss_pred EEECC
Confidence 88874
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.63 E-value=8.7e-13 Score=139.93 Aligned_cols=284 Identities=12% Similarity=0.075 Sum_probs=171.2
Q ss_pred CCcCccccccCC--Cc-------eeeeeeEEEEecCCCCCCCcceEEEeeC-----CeeEEEECCC--CeeeeEEeee-c
Q 003208 2 GKKDLSEWRLDV--GQ-------YLGEISALCFVHLPSHLSSLPFLLAGSG-----SQVLLYDLEA--GTLIRPFQVF-H 64 (839)
Q Consensus 2 ~d~~i~~w~~~~--~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~-----~~v~iwd~~~--~~~~~~~~~~-~ 64 (839)
.++.|.+|++.. ++ +...+..++|+ || +++|+++.. +.|.+|++.. |+........ .
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~s--pd----g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~ 98 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPS--AD----GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM 98 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEEC--TT----SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEEC--CC----CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC
Confidence 456788887643 33 23456789999 99 787777663 7999998765 5432222211 2
Q ss_pred CceEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEe--------ccCCCcce
Q 003208 65 GIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--------LPRLSHWV 135 (839)
Q Consensus 65 ~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~h~~~I 135 (839)
...+..+++. ++ .++++. .++.|.+|++........ ...... .+.+...+
T Consensus 99 ~~~p~~~~~d---------g~---~l~~~~~~~~~v~~~~~~~~g~~~~---------~~~~~~~~g~~~~~~~~~~~~~ 157 (361)
T 3scy_A 99 GADPCYLTTN---------GK---NIVTANYSGGSITVFPIGQDGALLP---------ASDVIEFKGSGPDKERQTMPHL 157 (361)
T ss_dssp SSCEEEEEEC---------SS---EEEEEETTTTEEEEEEBCTTSCBCS---------CSEEEECCCCCSCTTTCSSCCE
T ss_pred CCCcEEEEEC---------CC---EEEEEECCCCEEEEEEeCCCCcCcc---------cceeEEccCCCCCccccCCCcc
Confidence 2345556552 21 444444 579999999975321100 000001 11233457
Q ss_pred EEEEEeeccCCCcEEEEEe-CCCcEEEEecCCCce------E------EEEecCCceeEEEEeeccCCccceEEEEee-c
Q 003208 136 FDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSI------I------LEVHSPERCLLYSMKLWGDNLEALRIASGT-I 201 (839)
Q Consensus 136 ~~~~~~~~~~~~~~las~~-~d~~i~vwd~~~~~~------~------~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~-~ 201 (839)
.+++|+| ++++|++++ .++.|.+|++..... + .............+.+ ++++.++++++ .
T Consensus 158 ~~~~~sp---dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~ 231 (361)
T 3scy_A 158 HCVRITP---DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF---NSDGKFAYLINEI 231 (361)
T ss_dssp EEEEECT---TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETT
T ss_pred eEEEECC---CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE---cCCCCEEEEEcCC
Confidence 8899999 998665554 488999998875331 1 1222222223345555 68898777766 6
Q ss_pred CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE---ecCCCCeEEEEEcCCCCEEEEEeCC-
Q 003208 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDD- 277 (839)
Q Consensus 202 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~d- 277 (839)
++.|.+|++..++ ...+..+ ..+...+..++|+|+|++|+++..+
T Consensus 232 ~~~v~v~~~~~g~-------------------------------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 232 GGTVIAFRYADGM-------------------------------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp TCEEEEEEEETTE-------------------------------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred CCeEEEEEecCCc-------------------------------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 8999999997211 1112222 2344567899999999998776654
Q ss_pred -CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEe-CCCeEEEEc--C-CCceEEEeec-ccCC
Q 003208 278 -RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWG--S-DGKQLKMIKE-HIGR 349 (839)
Q Consensus 278 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~-~dg~i~vw~--~-~~~~~~~~~~-h~~~ 349 (839)
+.|.+|++...... .+.+. .... ...+..++|+ +++|++++ .++.|.+|+ . +++....... +..
T Consensus 281 ~~~i~v~~~~~~~g~----~~~~~--~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~- 352 (361)
T 3scy_A 281 ADGVAIFKVDETNGT----LTKVG--YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD- 352 (361)
T ss_dssp SCEEEEEEECTTTCC----EEEEE--EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS-
T ss_pred CCEEEEEEEcCCCCc----EEEee--EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC-
Confidence 89999999632110 22222 2222 4567789998 57777777 678999964 4 4554433322 233
Q ss_pred ceEEEEEc
Q 003208 350 GIWRCLYD 357 (839)
Q Consensus 350 ~i~~~~~~ 357 (839)
.+.|+.|.
T Consensus 353 ~p~~v~~~ 360 (361)
T 3scy_A 353 KPVCLKFV 360 (361)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEc
Confidence 47788875
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=6.9e-14 Score=163.36 Aligned_cols=326 Identities=10% Similarity=0.042 Sum_probs=201.3
Q ss_pred cCccccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCc--e--EEeEEecccccc
Q 003208 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGI--R--LHGISCNFINCT 79 (839)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~--~--v~~i~~~~~~~~ 79 (839)
+.+.+.|+..+.+......++|+ || +.+++++ ++.|++||+.+++....+..+... . ...++||
T Consensus 3 ~~~tl~~~~~~~~~~~~~~~~w~--~d----g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S----- 70 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRLKLYSLRWI--SD----HEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS----- 70 (740)
T ss_dssp EECCHHHHHHTCSCCCCCCEEEC--SS----SEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC-----
T ss_pred CceeHHHHhcCcccccccccEEC--CC----CcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEEC-----
Confidence 34666777777777778899999 99 7888887 999999999999877666654321 1 2336778
Q ss_pred cCCCccceeeEEEEEcC---------cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEE
Q 003208 80 EGSVSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (839)
Q Consensus 80 ~~~~~~~~~~~l~~~~~---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l 150 (839)
|||+ .++..+.+ +.+.+||+.++. ...+..|.+.+...+|+| +|+.|
T Consensus 71 --pdg~---~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----------------~~~l~~~~~~~~~~~~SP---dG~~l 126 (740)
T 4a5s_A 71 --PDGQ---FILLEYNYVKQWRHSYTASYDIYDLNKRQ----------------LITEERIPNNTQWVTWSP---VGHKL 126 (740)
T ss_dssp --TTSS---EEEEEEEEEECSSSCEEEEEEEEETTTTE----------------ECCSSCCCTTEEEEEECS---STTCE
T ss_pred --CCCC---EEEEEECCeeeEEEccceEEEEEECCCCc----------------EEEcccCCCcceeeEECC---CCCEE
Confidence 9984 34443433 567799987532 234667788899999999 99999
Q ss_pred EEEeCCCcEEEEecCCCceEEEEecCCceeEE-----------------EEeeccCCccceEEEEeecCC-eEEEEEeec
Q 003208 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLY-----------------SMKLWGDNLEALRIASGTIYN-EIIVWKVDW 212 (839)
Q Consensus 151 as~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----------------s~~~~~~~~~~~~l~sg~~dg-~i~vw~~~~ 212 (839)
|.+. ++.|++|++.+++..+.........++ .+. .+|||..||.++.|. .+.+|++..
T Consensus 127 a~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~---wSpDg~~la~~~~d~~~v~~~~~~~ 202 (740)
T 4a5s_A 127 AYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW---WSPNGTFLAYAQFNDTEVPLIEYSF 202 (740)
T ss_dssp EEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE---ECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred EEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE---ECCCCCEEEEEEEcccCCceEEEEe
Confidence 9885 789999999887754432222111111 122 379999999887654 488888752
Q ss_pred cccccCCC---CCCCccCCCCCCCceeeEeecccc---cce-eeEEEe------cCCCCeEEEEEcCCCCEEEEEeC---
Q 003208 213 EHVAPLLN---SPEGNHAHGSSSDFKCFKLQDQQH---TAV-NLFRLV------GHEGSIFRIEWSSCGSKLVSVSD--- 276 (839)
Q Consensus 213 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~--- 276 (839)
........ ........+......++.+|+... ... ....+. +|...+..++|+|||+.++....
T Consensus 203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~ 282 (740)
T 4a5s_A 203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ 282 (740)
T ss_dssp CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence 21110000 011122233333445677888753 210 223343 38888999999999986665532
Q ss_pred -CCcEEEEEcccCc----cCCCCCceeeeceEeeccccceE-----EeEEC--CCEEE-EEeC-C--CeEEEEcCCCceE
Q 003208 277 -DRSARIWEVRAEY----WKDSDSIEEVGSSVLYGHNARVW-----DCCLT--DSFII-TAGE-D--CTCRVWGSDGKQL 340 (839)
Q Consensus 277 -d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~h~~~v~-----~~~~~--~~~l~-s~~~-d--g~i~vw~~~~~~~ 340 (839)
+..|++||+.+++ + ..... ....+|...|. ...|+ ++.++ ..+. + ..|.+|+..+...
T Consensus 283 ~~~~i~~~d~~tg~~~~~~-----~~~~~-l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 283 NYSVMDICDYDESSGRWNC-----LVARQ-HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp TEEEEEEEEEETTTTEEEE-----CGGGC-EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CEEEEEEEECCCCccccce-----eEEEE-eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 3479999998875 2 00000 12245555544 67788 45655 5553 3 4677888865555
Q ss_pred EEeecccCCceEEEEEccCCCEEE-EEeC----CCcEEEEec
Q 003208 341 KMIKEHIGRGIWRCLYDSLSSLLV-TAGF----DSAIKVHQF 377 (839)
Q Consensus 341 ~~~~~h~~~~i~~~~~~~~~~~l~-t~~~----dg~i~iw~~ 377 (839)
..+..... .+..+.. ++++.|+ ++.. .+...+|.+
T Consensus 357 ~~lT~g~~-~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 357 TFITKGTW-EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp EESCCSSS-CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EecccCCE-EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 55554433 4655442 3455444 4443 234555544
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.61 E-value=1.3e-13 Score=145.54 Aligned_cols=227 Identities=9% Similarity=0.020 Sum_probs=153.3
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC-cceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISN 166 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~ 166 (839)
.+++...++.|++||+.+ .+.+..+..+. ..+..++|+| ++++++ ++..++.|.+||+.+
T Consensus 13 ~~v~~~~~~~v~~~d~~~---------------~~~~~~~~~~~~~~~~~~~~s~---dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVAS---------------DTVYKSCVMPDKFGPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp EEEEEETTTEEEEEETTT---------------TEEEEEEECSSCCSSCEEEECT---TSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEeCCCCeEEEEECCC---------------CcEEEEEecCCCCCCceeEECC---CCCEEEEEeCCCCcEEEEeCCC
Confidence 455556799999999875 34444444332 2578899999 888654 555689999999999
Q ss_pred CceEEEEecCC-----ceeEEEEeeccCCccceEEEEeecC------------CeEEEEEeeccccccCCCCCCCccCCC
Q 003208 167 SSIILEVHSPE-----RCLLYSMKLWGDNLEALRIASGTIY------------NEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (839)
Q Consensus 167 ~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~l~sg~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~~ 229 (839)
++.+..+..+. ......+.+ ++++.+|++++.+ +.|.+||+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--------------- 136 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAI---SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL--------------- 136 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEE---CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---------------
T ss_pred CcEEEEEEcccccccccccccceEE---CCCCCEEEEEcccccccccccccCCCeEEEEECCCcc---------------
Confidence 98887766432 111223333 6899999988866 899999987221
Q ss_pred CCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeec--------
Q 003208 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-------- 301 (839)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-------- 301 (839)
..+.+..+.. ...+.+++|+|+++ +++++. .|++||+.+++.. ..+..
T Consensus 137 ---------------~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~-----~~~~~~~~~~~~~ 192 (349)
T 1jmx_B 137 ---------------EAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYT-----VALPLRNWNRKGY 192 (349)
T ss_dssp ---------------GBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEE-----EEECSTTCCCTTB
T ss_pred ---------------ccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCcee-----ccccccccCCccc
Confidence 1222333333 34688999999999 666544 4999999876541 11100
Q ss_pred -------------------------------------------------------eEeeccccceEEeEEC---CCEEEE
Q 003208 302 -------------------------------------------------------SVLYGHNARVWDCCLT---DSFIIT 323 (839)
Q Consensus 302 -------------------------------------------------------~~~~~h~~~v~~~~~~---~~~l~s 323 (839)
.....+...+..++|+ ++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 193 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred cCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE
Confidence 0000011234455554 356776
Q ss_pred EeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+ ++.|.+||+ +++.+..+.... .+.+++|+|++++|++++.++.|++||++.
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred E--cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 6 889999999 677777766443 377999999999888888899999999854
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=1e-12 Score=139.49 Aligned_cols=268 Identities=9% Similarity=0.001 Sum_probs=166.0
Q ss_pred CeeEEEEC--CCCeeeeE--EeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEee-ccCCCCCCCCCcc
Q 003208 44 SQVLLYDL--EAGTLIRP--FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN-FELSPNSQYQPET 118 (839)
Q Consensus 44 ~~v~iwd~--~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~-~~~~~~~~~~~~~ 118 (839)
+.|.+|++ .+|++... ........+..++++ |||+ .++++..+ .|.+|++. .+.
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-------pdg~---~l~~~~~~-~v~~~~~~~~g~---------- 72 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-------HERK---NIYGAAMK-KWSSFAVKSPTE---------- 72 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-------TTSS---EEEEEEBT-EEEEEEEEETTE----------
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-------CCCC---EEEEEccc-eEEEEEECCCCC----------
Confidence 46777664 56764322 211122357889999 8884 45555555 99999997 321
Q ss_pred ccceeeeEeccCCCcceEEEEEeeccCCCcE--EEEEe-------------CCCcEEEEecC-CCceEEEEec---CCce
Q 003208 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGC-------------SDNSIRVWDIS-NSSIILEVHS---PERC 179 (839)
Q Consensus 119 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~--las~~-------------~d~~i~vwd~~-~~~~~~~~~~---~~~~ 179 (839)
...+.....+ +.+.+++|+| ++++ ++++. .++.+.+|++. +++....+.. ....
T Consensus 73 ---~~~~~~~~~~-g~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~ 145 (365)
T 1jof_A 73 ---IVHEASHPIG-GHPRANDADT---NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENT 145 (365)
T ss_dssp ---EEEEEEEECC-SSGGGGCTTS---CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTC
T ss_pred ---EEEeeEeecC-CCCccEEECC---CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCC
Confidence 1111111111 2245688899 9984 55553 68999999997 4655443331 1223
Q ss_pred eEEEEeeccCCccceEEEEeec-CCeEEEEEee-ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe--cC
Q 003208 180 LLYSMKLWGDNLEALRIASGTI-YNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GH 255 (839)
Q Consensus 180 ~~~s~~~~~~~~~~~~l~sg~~-dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h 255 (839)
....+.+ +|++.+|++++. ++.|++|++. .++ ...+..+. .|
T Consensus 146 ~~~~~~~---spdG~~l~~~~~~~~~v~~~~~~~~g~-------------------------------~~~~~~~~~~~~ 191 (365)
T 1jof_A 146 GIHGMVF---DPTETYLYSADLTANKLWTHRKLASGE-------------------------------VELVGSVDAPDP 191 (365)
T ss_dssp CEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTSC-------------------------------EEEEEEEECSST
T ss_pred cceEEEE---CCCCCEEEEEcCCCCEEEEEEECCCCC-------------------------------EEEeeeEecCCC
Confidence 3445555 689988877654 6899999986 111 11222333 24
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccc--CccCCCCCceeeece-Ee----ecccc------ceEEeE-EC--C
Q 003208 256 EGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRA--EYWKDSDSIEEVGSS-VL----YGHNA------RVWDCC-LT--D 318 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~--~~~~~~~~~~~~~~~-~~----~~h~~------~v~~~~-~~--~ 318 (839)
...+..++|+|+|+++++++. ++.|.+|+++. ++. ....... .+ .+|.. .+..++ |+ +
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP-----VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE-----EEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence 567999999999999988775 78999998763 222 0000000 11 12332 578899 88 5
Q ss_pred CEEEEEeCCC------eEEEEcC--CCceEE---EeecccCCceEEEEEcc---CCCEEEEEeCC-CcEEEEecCC
Q 003208 319 SFIITAGEDC------TCRVWGS--DGKQLK---MIKEHIGRGIWRCLYDS---LSSLLVTAGFD-SAIKVHQFQA 379 (839)
Q Consensus 319 ~~l~s~~~dg------~i~vw~~--~~~~~~---~~~~h~~~~i~~~~~~~---~~~~l~t~~~d-g~i~iw~~~~ 379 (839)
++|+++..+. .|.+|++ +++... ....+.. .+..++|+| +|++|++++.+ +.|++|+++.
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-CcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 6777665432 8999998 355433 1222333 356789999 89999998875 8999999854
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.58 E-value=6.5e-13 Score=140.13 Aligned_cols=258 Identities=10% Similarity=0.005 Sum_probs=169.4
Q ss_pred CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE----------cCcEEEEEEeeccCCCCC
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNS 112 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~----------~~~~i~iw~~~~~~~~~~ 112 (839)
++.|.+||..+++.+.++.... .. .++|+ |||+ .+.++. .++.|.+||..+
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~--~p-~i~~s-------pdg~---~lyv~~~~~~~~~~g~~~~~v~v~d~~t------ 90 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAF--NG-HVQVS-------NDGK---KIYTMTTYHERITRGKRSDVVEVWDADK------ 90 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCE--EE-EEEEC-------TTSS---EEEEEEEEETTSSSSCEEEEEEEEETTT------
T ss_pred cCeEEEEECCCCeEEEEecCCC--CC-ceEEC-------CCCC---EEEEEEecccccccCCCCCEEEEEECcC------
Confidence 5799999999999988887643 23 89999 9985 444443 257899999864
Q ss_pred CCCCccccceeeeEeccC------CCcceEEEEEeeccCCCcEEEEEeC--CCcEEEEecCCCceEEE-EecCCceeEEE
Q 003208 113 QYQPETCVNLSLVQSLPR------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE-VHSPERCLLYS 183 (839)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~------h~~~I~~~~~~~~~~~~~~las~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~s 183 (839)
++.+..+.. +......++++| ++++|+++.. ++.|.+||+.+++.+.. +..+.. +.
T Consensus 91 ---------~~~~~~i~~~~~~~~~g~~p~~i~~sp---dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~---~~ 155 (361)
T 2oiz_A 91 ---------LTFEKEISLPPKRVQGLNYDGLFRQTT---DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC---WS 155 (361)
T ss_dssp ---------CCEEEEEEECTTBCCBCCCGGGEEECT---TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE---EE
T ss_pred ---------CcEEEEEEcCccccccCCCcceEEECC---CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc---ce
Confidence 334444332 224567799999 9999988764 68999999999988877 554321 11
Q ss_pred EeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee------EEEecCCC
Q 003208 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL------FRLVGHEG 257 (839)
Q Consensus 184 ~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~ 257 (839)
+.+. +.....+++.+.||.+.+|+... .++.. ..+..+..
T Consensus 156 v~~~--p~~~~~~~~~~~dg~~~~v~~~~--------------------------------~g~~~~~~~~~~~~~~~~~ 201 (361)
T 2oiz_A 156 VIPQ--PNRPRSFMTICGDGGLLTINLGE--------------------------------DGKVASQSRSKQMFSVKDD 201 (361)
T ss_dssp EEEC--TTSSSEEEEEETTSSEEEEEECT--------------------------------TSSEEEEEECCCCSCTTTS
T ss_pred eEEc--CCCCeeEEEECCCCcEEEEEECC--------------------------------CCcEeeeccccceEcCCCC
Confidence 2221 22236778888999999999861 11111 01112222
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec----cc----cceEEeEEC--CCEEEEEeC-
Q 003208 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HN----ARVWDCCLT--DSFIITAGE- 326 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~----~~v~~~~~~--~~~l~s~~~- 326 (839)
++ .+.+++++..++..+.++.|.++|+..... .......... +. .....++|+ ++.++.+..
T Consensus 202 ~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 202 PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred ce-EEEecccCCEEEEEeCCCeEEEEEecCCCc------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 22 233456777777788899999999875432 1111001000 00 111124566 466665543
Q ss_pred ----------CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 ----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 ----------dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+.|.+||+ +++.+.++..+. +++++|+|+|++|++++. +.|.+||...
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 358999999 788888887665 789999999999998887 9999999854
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=3e-12 Score=130.79 Aligned_cols=236 Identities=9% Similarity=0.134 Sum_probs=164.5
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec------cCCCcceEEEEE
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL------PRLSHWVFDVCF 140 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~I~~~~~ 140 (839)
.+.+|+++ ++|+ .+++...++.|.+|+.+. +.+..+ .+|...+.++++
T Consensus 31 ~p~~v~~~-------~~g~---l~v~~~~~~~i~~~d~~g----------------~~~~~~~~~~~~~~~~~~p~~i~~ 84 (286)
T 1q7f_A 31 EPSGVAVN-------AQND---IIVADTNNHRIQIFDKEG----------------RFKFQFGECGKRDSQLLYPNRVAV 84 (286)
T ss_dssp CEEEEEEC-------TTCC---EEEEEGGGTEEEEECTTS----------------CEEEEECCBSSSTTCBSSEEEEEE
T ss_pred CCceEEEC-------CCCC---EEEEECCCCEEEEECCCC----------------cEEEEecccCCCcccccCceEEEE
Confidence 48889998 7772 344445689999998752 122222 234567899999
Q ss_pred e-eccCCCcEEEEEeC-CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccC
Q 003208 141 L-KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 141 ~-~~~~~~~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~ 218 (839)
. + ++.++++... ++.|++|| .+++.+..+..........+.+ ++++.++++...++.|.+|+..
T Consensus 85 ~~~---~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------- 150 (286)
T 1q7f_A 85 VRN---SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV---DNKGRIIVVECKVMRVIIFDQN------- 150 (286)
T ss_dssp ETT---TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE---CTTSCEEEEETTTTEEEEECTT-------
T ss_pred EcC---CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE---eCCCCEEEEECCCCEEEEEcCC-------
Confidence 5 5 6666666543 78999999 5677776665433233445555 5778888887778999999864
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCc
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 296 (839)
.+.+..+. ++...+.+|+++|+++.+++...++.|++||......
T Consensus 151 ---------------------------g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~------ 197 (286)
T 1q7f_A 151 ---------------------------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL------ 197 (286)
T ss_dssp ---------------------------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE------
T ss_pred ---------------------------CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE------
Confidence 22233332 4556789999999998888888899999999754322
Q ss_pred eeeeceEeeccccceEEeEEC--CCEEEEEeCCC-eEEEEcCCCceEEEeecccC-CceEEEEEccCCCEEEEEeCCCcE
Q 003208 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC-TCRVWGSDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAI 372 (839)
Q Consensus 297 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg-~i~vw~~~~~~~~~~~~h~~-~~i~~~~~~~~~~~l~t~~~dg~i 372 (839)
..+ ...++...+..++++ ++++++...++ .|.+|+.+++.+..+..+.. ..+.+++++|+|+++++ +.|+.|
T Consensus 198 ~~~---~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 198 RQI---GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRL 273 (286)
T ss_dssp EEE---SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred EEE---ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeE
Confidence 111 112233568889997 56777777776 99999998888877766543 13778999999987776 679999
Q ss_pred EEEecCC
Q 003208 373 KVHQFQA 379 (839)
Q Consensus 373 ~iw~~~~ 379 (839)
++|++..
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999843
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.54 E-value=2.4e-12 Score=135.78 Aligned_cols=273 Identities=8% Similarity=0.082 Sum_probs=180.2
Q ss_pred CCcCccccccCCCce-------eeeeeEEEEecCCCCCCCcceEEEee-----------CCeeEEEECCCCeeeeEEeee
Q 003208 2 GKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF 63 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~-------~~~Vt~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~~~~~~~~~~~~ 63 (839)
.|+++.+||..+++. ..| .++|+ || +++++++. ++.|.+||..+++.+.++...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~s--pd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~ 100 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVS--ND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP 100 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEEC--TT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEEC--CC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence 367899999888763 233 89999 99 77777764 467999999999999888754
Q ss_pred c-----CceEEeEEecccccccCCCccceeeEEEEE-c-CcEEEEEEeeccCCCCCCCCCccccceeeeEe-ccCCCcce
Q 003208 64 H-----GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWV 135 (839)
Q Consensus 64 ~-----~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I 135 (839)
. +..+..|+++ |||+ .++++. + +++|.+||+.. .+.+.. +... + .
T Consensus 101 ~~~~~~g~~p~~i~~s-------pdg~---~l~v~n~~~~~~v~v~d~~~---------------~~~~~~~i~~~-~-~ 153 (361)
T 2oiz_A 101 PKRVQGLNYDGLFRQT-------TDGK---FIVLQNASPATSIGIVDVAK---------------GDYVEDVTAAA-G-C 153 (361)
T ss_dssp TTBCCBCCCGGGEEEC-------TTSS---EEEEEEESSSEEEEEEETTT---------------TEEEEEEGGGT-T-E
T ss_pred ccccccCCCcceEEEC-------CCCC---EEEEECCCCCCeEEEEECCC---------------CcEEEEEecCC-C-c
Confidence 2 2346789999 9985 444443 3 68999999975 344555 4322 1 2
Q ss_pred EEEEEeeccCCC-cEEEEEeCCCcEEEEecCC-CceEEEEec-----CCceeEEEEeeccCCccceEEEEeecCCeEEEE
Q 003208 136 FDVCFLKVCNGN-RSLAIGCSDNSIRVWDISN-SSIILEVHS-----PERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (839)
Q Consensus 136 ~~~~~~~~~~~~-~~las~~~d~~i~vwd~~~-~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw 208 (839)
..+.+.| ++ ..+++.+.||.+.+|+... ++....... .....+ +....+++..++..+.++.|.++
T Consensus 154 ~~v~~~p---~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~v~v~ 226 (361)
T 2oiz_A 154 WSVIPQP---NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI----FIAPALDKDKAHFVSYYGNVYSA 226 (361)
T ss_dssp EEEEECT---TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB----CSCCEECSSEEEEEBTTSEEEEE
T ss_pred ceeEEcC---CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce----EEEecccCCEEEEEeCCCeEEEE
Confidence 2355667 44 5777888999999999865 554422210 000001 11113455566666788999999
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe------cCC----CCeEEEEEcCCCCEEEEEeC--
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHE----GSIFRIEWSSCGSKLVSVSD-- 276 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~----~~V~~l~~~~~~~~l~s~s~-- 276 (839)
|+.... ...+..+. .+. .....++|+|++++++++..
T Consensus 227 d~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~ 275 (361)
T 2oiz_A 227 DFSGDE-------------------------------VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD 275 (361)
T ss_dssp ECSSSS-------------------------------CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred EecCCC-------------------------------ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence 986111 00111110 000 11123689999888877643
Q ss_pred ---------CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CC--ceEEE
Q 003208 277 ---------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKM 342 (839)
Q Consensus 277 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~--~~~~~ 342 (839)
...|.+||+.+.+. +. .+..+. +++++|+ ++++++++. ++|.+||. ++ +.+.+
T Consensus 276 ~~~~~~~~~~~~v~viD~~t~~~-----v~-----~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 276 GKEGTHKFPAAEIWVMDTKTKQR-----VA-----RIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp CCTTCTTCCCSEEEEEETTTTEE-----EE-----EEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred CCcccccCCCceEEEEECCCCcE-----EE-----EEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 34899999988655 22 445554 8899998 578888886 99999999 78 88888
Q ss_pred eecccCCceEEEEEccCCC
Q 003208 343 IKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 343 ~~~h~~~~i~~~~~~~~~~ 361 (839)
+..... ..+.++++|+|.
T Consensus 343 i~~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 343 IEGAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp ETTSCS-SEEEEEECCCSC
T ss_pred eccCCC-CcEEEEecCCCC
Confidence 755554 578899999985
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.54 E-value=2.1e-12 Score=136.99 Aligned_cols=251 Identities=9% Similarity=-0.024 Sum_probs=157.6
Q ss_pred eeeEEEEecCCCCCCCcceEEEeeCCeeEEEECC-CCeeeeEEeeecCceEEeEEecccccccCCCccceee-EEEEE--
Q 003208 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF-EVALF-- 94 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~-~l~~~-- 94 (839)
.+..++|+ || +++|+++..+.|.+|++. +|++...........+.+++|+ |||+ . ++++.
T Consensus 41 ~~~~~a~s--pd----g~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~s-------pdg~---~l~~~~~~~ 104 (365)
T 1jof_A 41 PISWMTFD--HE----RKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDAD-------TNTR---AIFLLAAKQ 104 (365)
T ss_dssp CCSEEEEC--TT----SSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTT-------SCCE---EEEEEECSS
T ss_pred CCcEEEEC--CC----CCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEEC-------CCCC---EEEEEEecC
Confidence 57789999 99 787877774499999997 7876544432211235567787 8883 3 33332
Q ss_pred ------------cCcEEEEEEeeccCCCCCCCCCccccceeeeEec-cCCCcceEEEEEeeccCCCcEEEEEeC-CCcEE
Q 003208 95 ------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIR 160 (839)
Q Consensus 95 ------------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~ 160 (839)
.++.+.+|++..... ....+..+ ..+...+.+++|+| ++++|+++.. ++.|+
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~sp---dG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGK-----------LEKNVQNYEYQENTGIHGMVFDP---TETYLYSADLTANKLW 170 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCC-----------EEEEEEEEECCTTCCEEEEEECT---TSSEEEEEETTTTEEE
T ss_pred CcceeccceeecCCceEEEEccCCCCc-----------CcceEeeEEeCCCCcceEEEECC---CCCEEEEEcCCCCEEE
Confidence 578999999974210 01112221 13456799999999 9998887654 67999
Q ss_pred EEecC-CCceE--EEEecCC-ceeEEEEeeccCCccceEEEEeec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 161 VWDIS-NSSII--LEVHSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 161 vwd~~-~~~~~--~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
+|++. +++.. ..+..+. ......+.+ ++++.++++++. ++.|.+|++...
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~---------------------- 225 (365)
T 1jof_A 171 THRKLASGEVELVGSVDAPDPGDHPRWVAM---HPTGNYLYALMEAGNRICEYVIDPA---------------------- 225 (365)
T ss_dssp EEEECTTSCEEEEEEEECSSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTT----------------------
T ss_pred EEEECCCCCEEEeeeEecCCCCCCCCEeEE---CCCCCEEEEEECCCCeEEEEEEeCC----------------------
Confidence 99998 66543 2333221 223445555 689988877664 789999987610
Q ss_pred eeEeeccccccee------eEEE----ecCCC------CeEEEE-EcCCCCEEEEEeCCC------cEEEEEcc-cCccC
Q 003208 236 CFKLQDQQHTAVN------LFRL----VGHEG------SIFRIE-WSSCGSKLVSVSDDR------SARIWEVR-AEYWK 291 (839)
Q Consensus 236 ~~~~~~~~~~~~~------~~~~----~~h~~------~V~~l~-~~~~~~~l~s~s~d~------~i~iwd~~-~~~~~ 291 (839)
+++. +..+ .+|.. .+..++ |+|+|++|+++..+. .|.+|++. +++.
T Consensus 226 ---------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~- 295 (365)
T 1jof_A 226 ---------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI- 295 (365)
T ss_dssp ---------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-
T ss_pred ---------CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-
Confidence 1111 1111 12333 588999 999999988776433 89999996 3322
Q ss_pred CCCCceeeeceEeeccccceEEeEEC-----CCEEEEEeCC-CeEEEEcCCCceE
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGED-CTCRVWGSDGKQL 340 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~d-g~i~vw~~~~~~~ 340 (839)
..+. .....+...+..++|+ +++|++++.+ +.|.+|+++...+
T Consensus 296 -----~~~~-~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 296 -----EKQL-FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp -----EEEE-EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred -----EEee-eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 2110 0122233334455554 5788888765 8999999844333
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.53 E-value=7.1e-13 Score=142.22 Aligned_cols=259 Identities=8% Similarity=-0.062 Sum_probs=160.7
Q ss_pred eEEEECCCCeeeeEEeeecCceEEe-----EEecccccccCCCccceeeEEEEEc-Cc--EEEEEEeeccCCCCCCCCCc
Q 003208 46 VLLYDLEAGTLIRPFQVFHGIRLHG-----ISCNFINCTEGSVSTRVTFEVALFG-EK--RVKLFELNFELSPNSQYQPE 117 (839)
Q Consensus 46 v~iwd~~~~~~~~~~~~~~~~~v~~-----i~~~~~~~~~~~~~~~~~~~l~~~~-~~--~i~iw~~~~~~~~~~~~~~~ 117 (839)
...+|..+|..+..+..+.. .... .+|+ |||+ .++.++. ++ .|.+||+..
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~-~~~~~~~~~~~~S-------pDg~---~l~~~~~~~g~~~l~~~d~~~----------- 69 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDV-TCHRNYFYQKCFT-------RDGS---KLLFGGAFDGPWNYYLLDLNT----------- 69 (388)
T ss_dssp EEEECTTTCCEEEECSCTTS-CEECCCTTSCCBC-------TTSC---EEEEEECTTSSCEEEEEETTT-----------
T ss_pred eEEecCCCCcceEEecCCcc-cccchhhcCccCC-------CCCC---EEEEEEcCCCCceEEEEeCCC-----------
Confidence 34567778887777765443 3444 6788 9984 4444454 56 466666654
Q ss_pred cccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
.+......++...+..++|+| +++.|+.++.++.|++||+.+++.......+...... ..+ ..++++.+++
T Consensus 70 ----g~~~~lt~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~-~~~-~~~~dg~~l~ 140 (388)
T 3pe7_A 70 ----QVATQLTEGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY-GTW-VANSDCTKLV 140 (388)
T ss_dssp ----CEEEECCCSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE-EEE-EECTTSSEEE
T ss_pred ----CceEEeeeCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccc-cce-eECCCCCeec
Confidence 445555566766666788999 9999999999999999999998876655544432111 111 1156777776
Q ss_pred Ee----------------------ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 198 SG----------------------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 198 sg----------------------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
.. ..+..|++||+. +++ ...+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~-~~~l~~~ 186 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK---------------------------------TGE-STVILQE 186 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT---------------------------------TCC-EEEEEEE
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECC---------------------------------CCc-eEEeecC
Confidence 42 233567777765 333 3344456
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEcccCccCCCCCceeeeceEeeccc--cceEEeEEC--CCEEEE-
Q 003208 256 EGSIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--ARVWDCCLT--DSFIIT- 323 (839)
Q Consensus 256 ~~~V~~l~~~~-~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s- 323 (839)
...+..++|+| +++.|+.++.+ ..|.++|...... + .+..+. ..+...+|+ ++.|+.
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~-----~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM------R-----KVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC------E-----ESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce------E-----EeeeCCCCcccccceECCCCCEEEEE
Confidence 77899999999 99998887753 3677888765543 1 333333 357778898 455544
Q ss_pred EeCCC----eEEEEcC-CCce--EEEeecccC--CceEEEEEccCCCEEEEE---------eCCCcEEEEecCCc
Q 003208 324 AGEDC----TCRVWGS-DGKQ--LKMIKEHIG--RGIWRCLYDSLSSLLVTA---------GFDSAIKVHQFQAF 380 (839)
Q Consensus 324 ~~~dg----~i~vw~~-~~~~--~~~~~~h~~--~~i~~~~~~~~~~~l~t~---------~~dg~i~iw~~~~~ 380 (839)
...++ .|++||+ .++. +..+..+.. .....++|+|||+.|+.. ..+..|.+||+.+.
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 33222 3999999 4543 223322110 001113689999877653 45678999998653
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.50 E-value=1.3e-12 Score=140.13 Aligned_cols=273 Identities=12% Similarity=-0.029 Sum_probs=167.7
Q ss_pred EEEecCCCCCCCcceEEEee--CC--eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 23 LCFVHLPSHLSSLPFLLAGS--GS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 23 l~f~~~~~~~~~~~~l~~g~--~~--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
.+|+ || +++|+... ++ .|.+||+.+++.......+ ...+.+..|+ |||+ .++.+..++.
T Consensus 41 ~~~S--pD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~s-------pdg~---~l~~~~~~~~ 103 (388)
T 3pe7_A 41 KCFT--RD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR-GDNTFGGFLS-------PDDD---ALFYVKDGRN 103 (388)
T ss_dssp CCBC--TT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCSS-CBCSSSCEEC-------TTSS---EEEEEETTTE
T ss_pred ccCC--CC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC-CCCccceEEc-------CCCC---EEEEEeCCCe
Confidence 7899 99 67666655 45 5888999988876655443 3334567899 9984 5555566789
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE--eeccCCCcEEEEE----------------------e
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIG----------------------C 154 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~--~~~~~~~~~las~----------------------~ 154 (839)
|++||+.... ....+..+...+....+ +| ++.+++.. .
T Consensus 104 l~~~d~~~g~---------------~~~~~~~~~~~~~~~~~~~~~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 104 LMRVDLATLE---------------ENVVYQVPAEWVGYGTWVANS---DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EEEEETTTCC---------------EEEEEECCTTEEEEEEEEECT---TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEEEECCCCc---------------ceeeeechhhcccccceeECC---CCCeeccccccCcccccccccchhhhhhccC
Confidence 9999998633 22333445555544444 66 88887642 2
Q ss_pred CCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-cceEEEEeecC------CeEEEEEeeccccccCCCCCCCccC
Q 003208 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 155 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
.+..|.+||+.+++......... .+..+.+ +| ++..|+..... ..|.+++..
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---------------- 224 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ--WLGHPIY---RPYDDSTVAFCHEGPHDLVDARMWLINED---------------- 224 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCTTTSSCSEEEEETT----------------
T ss_pred CcceEEEEECCCCceEEeecCCc--cccccEE---CCCCCCEEEEEEecCCCCCcceEEEEeCC----------------
Confidence 34679999999887554443322 1334444 58 88888876653 256666654
Q ss_pred CCCCCCceeeEeecccccceeeEEEecCC--CCeEEEEEcCCCCEEEEEeCC-C----cEEEEEcccCccCCCCCceeee
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSSCGSKLVSVSDD-R----SARIWEVRAEYWKDSDSIEEVG 300 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s~d-~----~i~iwd~~~~~~~~~~~~~~~~ 300 (839)
. .....+..+. ..+..++|+|||+.|+..+.+ + .|++||+.+++. +.+.
T Consensus 225 -----------------~-~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~~l~ 280 (388)
T 3pe7_A 225 -----------------G-TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN------RQLT 280 (388)
T ss_dssp -----------------S-CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------EEEE
T ss_pred -----------------C-CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce------EEEE
Confidence 1 1222333333 357788999999987654432 2 399999988754 1111
Q ss_pred ceEeeccccc---eEEeEEC--CCEEEEE---------eCCCeEEEEcCCCceEEEeecccCC----------ceEEEEE
Q 003208 301 SSVLYGHNAR---VWDCCLT--DSFIITA---------GEDCTCRVWGSDGKQLKMIKEHIGR----------GIWRCLY 356 (839)
Q Consensus 301 ~~~~~~h~~~---v~~~~~~--~~~l~s~---------~~dg~i~vw~~~~~~~~~~~~h~~~----------~i~~~~~ 356 (839)
...++... .....|+ ++.|+.. ..+..|++||+.+..+..+..+... .+.+++|
T Consensus 281 --~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T 3pe7_A 281 --SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF 358 (388)
T ss_dssp --EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred --cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccC
Confidence 12221110 1112455 4444432 5567899999965555666555430 2677899
Q ss_pred ccCCCEEEEEe-CCCcEEEEec
Q 003208 357 DSLSSLLVTAG-FDSAIKVHQF 377 (839)
Q Consensus 357 ~~~~~~l~t~~-~dg~i~iw~~ 377 (839)
+|||+.|+..+ .+|...+|.+
T Consensus 359 spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 359 TPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEecCCCceeEEEE
Confidence 99998777665 4777777765
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.50 E-value=9e-12 Score=145.43 Aligned_cols=306 Identities=10% Similarity=0.067 Sum_probs=181.3
Q ss_pred CcCccccccCCCcee------------eeeeEEEEecCCCCCCCcceEEEeeC----------CeeEEEECCCCeeeeEE
Q 003208 3 KKDLSEWRLDVGQYL------------GEISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (839)
Q Consensus 3 d~~i~~w~~~~~~~~------------~~Vt~l~f~~~~~~~~~~~~l~~g~~----------~~v~iwd~~~~~~~~~~ 60 (839)
|++|++||+.+++.. .....++|| || +++|+.+.+ +.+.+||+.+++... +
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pd----g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l 107 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PD----GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E 107 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CC----CCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c
Confidence 789999999887611 112347889 99 788777774 677899999988643 4
Q ss_pred eeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcce-----
Q 003208 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV----- 135 (839)
Q Consensus 61 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I----- 135 (839)
..+.. .+...+|| ||| ..|+...++.|++|++..+......+ .+.....+.++.++|
T Consensus 108 ~~~~~-~~~~~~~S-------PdG----~~la~~~~~~i~~~~~~~~~~~~lt~------~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 108 ERIPN-NTQWVTWS-------PVG----HKLAYVWNNDIYVKIEPNLPSYRITW------TGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp SCCCT-TEEEEEEC-------SST----TCEEEEETTEEEEESSTTSCCEECCS------CCBTTTEEESBCCHHHHHHT
T ss_pred ccCCC-cceeeEEC-------CCC----CEEEEEECCeEEEEECCCCceEEEcC------CCCccceecCcccccccchh
Confidence 43333 58999999 999 56666678999999987533000000 000011223444333
Q ss_pred ----EEEEEeeccCCCcEEEEEeCCC------------------------------------cEEEEecCC---Cc--eE
Q 003208 136 ----FDVCFLKVCNGNRSLAIGCSDN------------------------------------SIRVWDISN---SS--II 170 (839)
Q Consensus 136 ----~~~~~~~~~~~~~~las~~~d~------------------------------------~i~vwd~~~---~~--~~ 170 (839)
..+.|+| ||+.||.++.|. .|.+||+.+ ++ ..
T Consensus 170 ~~~~~~~~wSp---Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 170 FSAYSALWWSP---NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp SSSSBCEEECT---TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred cCCCcceEECC---CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 3489999 999998875322 478888887 63 23
Q ss_pred EEEecC-----CceeEEEEeeccCCccceEEEEeec----CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 171 LEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 171 ~~~~~~-----~~~~~~s~~~~~~~~~~~~l~sg~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
..+..+ ....+..+.+ +|++.+++.... +..|.+||+.+++...
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~w---spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~------------------------ 299 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTW---ATQERISLQWLRRIQNYSVMDICDYDESSGRW------------------------ 299 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEE---EETTEEEEEEEESSTTEEEEEEEEEETTTTEE------------------------
T ss_pred EEecCCccCCCCCeEEEEEEE---eCCCeEEEEEeCCCCCEEEEEEEECCCCcccc------------------------
Confidence 334321 3334556665 688886665433 3479999988322000
Q ss_pred ccccceeeEEE--ecCCCCeE-----EEEEcCCCCEEE-EEeC-C--CcEEEEEcccCccCCCCCceeeeceEeeccccc
Q 003208 242 QQHTAVNLFRL--VGHEGSIF-----RIEWSSCGSKLV-SVSD-D--RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (839)
Q Consensus 242 ~~~~~~~~~~~--~~h~~~V~-----~l~~~~~~~~l~-s~s~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (839)
....+..+ .+|...|. ...|+|||+.|+ ..+. + .+|++||+.++.. + .+......
T Consensus 300 ---~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~------~-----~lT~g~~~ 365 (740)
T 4a5s_A 300 ---NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC------T-----FITKGTWE 365 (740)
T ss_dssp ---EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC------E-----ESCCSSSC
T ss_pred ---ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce------E-----ecccCCEE
Confidence 00011112 45666655 788999999877 6654 3 4688888877554 1 22222333
Q ss_pred eEEe-EECCCEEE-EEeC----CC--eEEEEcCCCceEE-Eeecc----cCCceEEEEEccCCCEEEEEeCC---CcEEE
Q 003208 311 VWDC-CLTDSFII-TAGE----DC--TCRVWGSDGKQLK-MIKEH----IGRGIWRCLYDSLSSLLVTAGFD---SAIKV 374 (839)
Q Consensus 311 v~~~-~~~~~~l~-s~~~----dg--~i~vw~~~~~~~~-~~~~h----~~~~i~~~~~~~~~~~l~t~~~d---g~i~i 374 (839)
|..+ .++++.++ ++.. .+ .|...++.+.... .+... .. ......|+|++++++..... ..+.+
T Consensus 366 v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~-~~~~~~~S~dg~~~~~~~s~~~~p~~~l 444 (740)
T 4a5s_A 366 VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERC-QYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (740)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTB-CBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCC-ceEEEEECCCCCEEEEEeCCCCCCEEEE
Confidence 4443 35555544 4443 23 3444445443332 34321 23 57889999999876654433 35666
Q ss_pred EecC
Q 003208 375 HQFQ 378 (839)
Q Consensus 375 w~~~ 378 (839)
++..
T Consensus 445 ~~~~ 448 (740)
T 4a5s_A 445 HSSV 448 (740)
T ss_dssp EETT
T ss_pred EECC
Confidence 6653
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=1.8e-11 Score=124.99 Aligned_cols=240 Identities=11% Similarity=0.062 Sum_probs=166.0
Q ss_pred CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC-----CceeEEEEeeccCCccceEEEEeec-CC
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI-YN 203 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~-----~~~~~~s~~~~~~~~~~~~l~sg~~-dg 203 (839)
++-..+.+++++| ++.++++...++.|.+||.. ++.+..+... .......+.+ .++++.++++... ++
T Consensus 27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~--~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAV--VRNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEE--ETTTTEEEEEECGGGC
T ss_pred CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEE--EcCCCeEEEEcCCCCC
Confidence 5556789999999 89888888889999999986 5555555321 1112334443 1356666666643 88
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~i 282 (839)
.|++|+.. ++.+..+. .+...+.+++++|+++.+++...++.|.+
T Consensus 101 ~i~~~d~~----------------------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 101 QIQIYNQY----------------------------------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp EEEEECTT----------------------------------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEECCC----------------------------------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 99999843 33333343 34467899999999998888788899999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeeccc--CCceEEEEEcc
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI--GRGIWRCLYDS 358 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~--~~~i~~~~~~~ 358 (839)
||...... ..+ ....+...+..++++ ++++++...++.|++|+.+++.+..+..+. . .+..+++++
T Consensus 147 ~~~~g~~~------~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~-~p~~i~~d~ 216 (286)
T 1q7f_A 147 FDQNGNVL------HKF---GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITN-YPIGVGINS 216 (286)
T ss_dssp ECTTSCEE------EEE---ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSC-SEEEEEECT
T ss_pred EcCCCCEE------EEe---CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccC-CCcEEEECC
Confidence 99654321 111 112344568899998 456666677899999999888777775442 3 478999999
Q ss_pred CCCEEEEEeCCC-cEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe
Q 003208 359 LSSLLVTAGFDS-AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (839)
Q Consensus 359 ~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 437 (839)
+|+++++...++ .|.+|+.++..+..+.. . .....+..+++.+++.++++.
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~------------------~----------~~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQDGQLISALES------------------K----------VKHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp TCCEEEEECSSSCEEEEECTTSCEEEEEEE------------------S----------SCCSCEEEEEEETTTEEEEEE
T ss_pred CCCEEEEeCCCCEEEEEECCCCCEEEEEcc------------------c----------CCCCcceeEEECCCCcEEEEC
Confidence 999888888776 99999975533222111 0 011237789999999999888
Q ss_pred ccceEEEEEe
Q 003208 438 NHGYLYHTKL 447 (839)
Q Consensus 438 ~~g~i~~~~~ 447 (839)
.++.|..|++
T Consensus 269 ~~~~v~v~~~ 278 (286)
T 1q7f_A 269 KDYRLYIYRY 278 (286)
T ss_dssp TTTEEEEEEC
T ss_pred CCCeEEEEEc
Confidence 7788876654
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=4.3e-11 Score=124.44 Aligned_cols=266 Identities=8% Similarity=-0.049 Sum_probs=180.2
Q ss_pred CCcCccccccCCCceee-------------eeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCce
Q 003208 2 GKKDLSEWRLDVGQYLG-------------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIR 67 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~~~-------------~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~ 67 (839)
.+++|.++|..+++... ....+++. .+ ++.++.. ++.|.+||.++++.+.++... ..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~-----~lyv~~~~~~~v~viD~~t~~~~~~i~~~--~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DG-----IGWIVVNNSHVIFAIDINTFKEVGRITGF--TS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TT-----EEEEEEGGGTEEEEEETTTCCEEEEEECC--SS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CC-----EEEEEEcCCCEEEEEECcccEEEEEcCCC--CC
Confidence 47899999999876332 24567777 43 3444444 799999999999999988643 35
Q ss_pred EEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC-----cceEEEEEe
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFL 141 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~I~~~~~~ 141 (839)
+.+|+++ +++ .++++. .++.|.+||+.+. +....+.... .....+++
T Consensus 86 p~~i~~~-------~~g----~lyv~~~~~~~v~~iD~~t~---------------~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 86 PRYIHFL-------SDE----KAYVTQIWDYRIFIINPKTY---------------EITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp EEEEEEE-------ETT----EEEEEEBSCSEEEEEETTTT---------------EEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CcEEEEe-------CCC----eEEEEECCCCeEEEEECCCC---------------eEEEEEEcCCccccCCCcceEEE-
Confidence 8999998 776 455554 6899999998752 3333332221 24566777
Q ss_pred eccCCCcEEEEEe-CCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC----------CeEEEEEe
Q 003208 142 KVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----------NEIIVWKV 210 (839)
Q Consensus 142 ~~~~~~~~las~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d----------g~i~vw~~ 210 (839)
. ++.++++.. .++.|.++|+.+++.+.++...... ..+.+ ++++.++++...+ +.|.++|.
T Consensus 139 ~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p--~~i~~---~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 139 Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP--TSLVM---DKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB--CCCEE---CTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc--cceEE---cCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4 666555554 4889999999999888877643321 12222 5778777776554 78999998
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~ 289 (839)
. +.+....+.-. ......++|+|++++|+.+.. .|.+||..+.+
T Consensus 211 ~---------------------------------t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 211 E---------------------------------TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp T---------------------------------TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred C---------------------------------CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 7 45544444322 246899999999999888765 89999998765
Q ss_pred cCCCCCceeeeceEeeccccceEEeEEC---CCEEEEE----eCCCeEEEEcCCCceEEEeecccCCceEEEEE
Q 003208 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA----GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (839)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~----~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~ 356 (839)
.. . . ............++++ +...++. ..++.|.+||.+++.+.++..-.. ...++|
T Consensus 256 ~~-----~-~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~--P~~~~~ 319 (328)
T 3dsm_A 256 VP-----V-R--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGII--PGAFCW 319 (328)
T ss_dssp CC-----S-S--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEES--EEEEEE
T ss_pred ee-----e-e--eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccC--cceEEE
Confidence 41 1 0 0111124567889997 3455665 578999999999988888865433 456666
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.47 E-value=6.1e-12 Score=131.16 Aligned_cols=245 Identities=11% Similarity=0.080 Sum_probs=167.9
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEeeCC-------------------------eeEEEECCCCeeeeEEeeecCceEEe
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGSGS-------------------------QVLLYDLEAGTLIRPFQVFHGIRLHG 70 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~-------------------------~v~iwd~~~~~~~~~~~~~~~~~v~~ 70 (839)
..+.|.+|+++ |+ ++++++..++ .|.+||..+++.+..+....-..+.+
T Consensus 22 ~l~~v~~va~d--~~----G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 22 LPGQVSGVALD--SK----NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHG 95 (329)
T ss_dssp CCSCEEEEEEC--TT----CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEE
T ss_pred ecCCceEEEEC--CC----CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceE
Confidence 46789999999 98 7888887743 79999999999876655333346899
Q ss_pred EEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec---------cCCCcceEEEEEe
Q 003208 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---------PRLSHWVFDVCFL 141 (839)
Q Consensus 71 i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~I~~~~~~ 141 (839)
|+++ ++|+ .+++..+++.|++|+.+... ..+..+ .++.....+++++
T Consensus 96 ia~d-------~~g~---l~v~d~~~~~v~~~~~~g~~--------------~~~~~~~~~~~~g~~~~~~~~P~~ia~~ 151 (329)
T 3fvz_A 96 LSID-------TDGN---YWVTDVALHQVFKLDPHSKE--------------GPLLILGRSMQPGSDQNHFCQPTDVAVE 151 (329)
T ss_dssp EEEC-------TTSC---EEEEETTTTEEEEECTTCSS--------------CCSEEESBTTBCCCSTTCCSSEEEEEEC
T ss_pred EEEC-------CCCC---EEEEECCCCEEEEEeCCCCe--------------EEEEEecccCCCCCCccccCCCcEEEEe
Confidence 9999 8883 44444567999999975321 012222 3455578999999
Q ss_pred eccCCCcEEEEEe-CCCcEEEEecCCCceEEEEecCC---------ceeEEEEeeccCCcc-ceEEEEeecCCeEEEEEe
Q 003208 142 KVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE---------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 142 ~~~~~~~~las~~-~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~s~~~~~~~~~-~~~l~sg~~dg~i~vw~~ 210 (839)
| .++.++++.+ .++.|++|+ .+++.+..+.... ......+++ +++ +.++++...++.|++|+.
T Consensus 152 ~--~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~---d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 152 P--STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL---VPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp T--TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE---ETTTTEEEEEETTTTEEEEEET
T ss_pred C--CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE---ECCCCEEEEEECCCCEEEEEEC
Confidence 7 1456666665 589999999 4676666653211 111334444 466 778888888999999998
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE--ecCCCCeEEEEEcC------CCCEEEEEeCCCcEEE
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSS------CGSKLVSVSDDRSARI 282 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~------~~~~l~s~s~d~~i~i 282 (839)
. +++.+..+ .++...+.+++|+| +++..++...+..|++
T Consensus 226 ~---------------------------------~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 226 D---------------------------------TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp T---------------------------------TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred C---------------------------------CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 7 45555555 34667889999999 3333333334558999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCC
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 336 (839)
|+..+++. +..+. ...++...+..++++ +.++++...++.|++|+++
T Consensus 273 ~~~~~g~~-----~~~~~--~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 273 MNFSSGEI-----IDVFK--PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EETTTCCE-----EEEEC--CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEcCCCeE-----EEEEc--CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 99988765 22111 113566778999998 4577788889999999974
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.47 E-value=5.4e-12 Score=145.80 Aligned_cols=285 Identities=11% Similarity=-0.007 Sum_probs=175.6
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEe--e-CCeeEEEECCCCeeeeEEeeecCceEE---------eEEecccccccCCC
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAG--S-GSQVLLYDLEAGTLIRPFQVFHGIRLH---------GISCNFINCTEGSV 83 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g--~-~~~v~iwd~~~~~~~~~~~~~~~~~v~---------~i~~~~~~~~~~~~ 83 (839)
|...|..++|+ ++ +.+++.. . ++...||....+.....+..+.. .+. ...++.+ ||
T Consensus 22 ~~~~~~~~~~s--~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~S-----PD 89 (662)
T 3azo_A 22 RSGRPACVGAV--GD----EVWWVAPRPAEAGRATLVRRRADGAEESALPAPW-NVRNRVFEYSGFPWAGVPR-----PA 89 (662)
T ss_dssp TCSCCEEEEEE--TT----EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC-CBCCCGGGTCCCCEEEECC-----SS
T ss_pred cCCccceeEEc--CC----eEEEEecCcccCCcEEEEEECCCCCcceeCCCCc-cccccccccCCccceeeee-----cC
Confidence 56779999999 77 6666665 3 67899999654444444443332 233 3333311 78
Q ss_pred ccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccce-eeeEeccC-----CCcceEEEEEeeccCCCcEEEEEeCC-
Q 003208 84 STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL-SLVQSLPR-----LSHWVFDVCFLKVCNGNRSLAIGCSD- 156 (839)
Q Consensus 84 ~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----h~~~I~~~~~~~~~~~~~~las~~~d- 156 (839)
|+ .+|+...+....||.++.... . .....+.. |...+.+++|+| +++.|++++.+
T Consensus 90 g~---~~la~~~~~~~~l~~~~~~~~------------g~~~~~~l~~~~~~~~~~~~~~~~~sp---Dg~~l~~~~~~~ 151 (662)
T 3azo_A 90 GG---PLLVFTHFGDQRLYAFEPDAP------------GGAVPRPLTPVSAVGGGLRWADPVLLP---ERGEVWCMAEEF 151 (662)
T ss_dssp SS---CEEEEEBTTTCCEEEECTTST------------TCCCCEECSCCCCSTTCEEEEEEEEET---TTTEEEEEEEEE
T ss_pred CC---eEEEEEECCCCeEEEEcCCCC------------CCCCCEeccCCccCCCCccccCcEECC---CCCEEEEEEecc
Confidence 83 326666554455555553200 0 11223333 677899999999 99999988876
Q ss_pred ---------CcEEEEecCC------CceEEEEe-cCCceeEEEEeeccCCccceEEEEeecC--------CeEEEEEee-
Q 003208 157 ---------NSIRVWDISN------SSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVD- 211 (839)
Q Consensus 157 ---------~~i~vwd~~~------~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~sg~~d--------g~i~vw~~~- 211 (839)
..|.+||+.+ ++. ..+. ... .....+.+ +|++.+|+..+.+ ..|++||+.
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~---SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH-RFVTGPRL---SPDGRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS-SEECCCEE---CTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC-CcccCceE---CCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 5899999987 444 3333 222 22333444 7999999887755 378999986
Q ss_pred ccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcccCc
Q 003208 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRAEY 289 (839)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~--~i~iwd~~~~~ 289 (839)
.++ ..+......+|...+..+.|+|||+.+++++.++ .|.+||+.+++
T Consensus 227 ~g~------------------------------~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 227 DGR------------------------------FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp TSC------------------------------EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred CCc------------------------------ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 110 0133333445678999999999999888888888 55566654443
Q ss_pred cCCCCCceeeeceEeeccccc--------eEEeEEC--CCEEEEEeCCCeEEEE--cCCCceEEEeecccCCceEEE-EE
Q 003208 290 WKDSDSIEEVGSSVLYGHNAR--------VWDCCLT--DSFIITAGEDCTCRVW--GSDGKQLKMIKEHIGRGIWRC-LY 356 (839)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~--------v~~~~~~--~~~l~s~~~dg~i~vw--~~~~~~~~~~~~h~~~~i~~~-~~ 356 (839)
. +. ....+... +..++|+ +.+++++.. +.+++| |..+..+..+..+.. .+..+ ++
T Consensus 277 ~------~~----l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~s~ 344 (662)
T 3azo_A 277 A------TQ----LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWT-EWAATLTV 344 (662)
T ss_dssp E------EE----SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCC-EEEEEEEE
T ss_pred e------ee----cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCC-eEEEEEec
Confidence 2 11 11111111 4467776 578888888 999999 555556777877766 57766 55
Q ss_pred ccCCCEEEEEeCCCcEEEEec
Q 003208 357 DSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 357 ~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.+.-++++++.+....+|.+
T Consensus 345 ~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 345 SGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp ETTEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEcCCCCCCEEEEE
Confidence 444334555566655555544
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.44 E-value=4.8e-11 Score=124.77 Aligned_cols=271 Identities=10% Similarity=0.012 Sum_probs=171.6
Q ss_pred eeeeEEEEecCCCCCCCcceEEE-eeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEE-EEc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA-LFG 95 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~-g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~-~~~ 95 (839)
..|.+++|+ ++ ...++. +.++.++.| .++....+..... .+.+++|+ ++| .+++ ...
T Consensus 6 ~~~~~~~~~--~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~-------~~g----~l~~~~~~ 64 (333)
T 2dg1_A 6 QDLPTLFYS--GK----SNSAVPIISESELQTI---TAEPWLEISKKGL-QLEGLNFD-------RQG----QLFLLDVF 64 (333)
T ss_dssp CCCCBCCSC--GG----GGCSSCCCCGGGSCEE---ECEEEEEEESSCC-CEEEEEEC-------TTS----CEEEEETT
T ss_pred cccceeeec--CC----ccceeEEeecccCccc---ccceeEEEeccCc-cccCcEEC-------CCC----CEEEEECC
Confidence 457888999 77 444444 447888999 3555666654433 47899998 887 4444 445
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC----CcEEEEecCCCceEE
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVWDISNSSIIL 171 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d----~~i~vwd~~~~~~~~ 171 (839)
++.|.+|+.+... .......+...+.+++++| +++++++...+ +.|.+||..++....
T Consensus 65 ~~~i~~~d~~~~~---------------~~~~~~~~~~~~~~i~~~~---dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 65 EGNIFKINPETKE---------------IKRPFVSHKANPAAIKIHK---DGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp TCEEEEECTTTCC---------------EEEEEECSSSSEEEEEECT---TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred CCEEEEEeCCCCc---------------EEEEeeCCCCCcceEEECC---CCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 7899999876432 2222224567899999999 88887777665 689999998776543
Q ss_pred EEec-CCceeEEEEeeccCCccceEEEEeec------CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccc
Q 003208 172 EVHS-PERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (839)
Q Consensus 172 ~~~~-~~~~~~~s~~~~~~~~~~~~l~sg~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (839)
.+.. .....+..+.+ ++++.++++... .+.|..++..
T Consensus 127 ~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~l~~~~~~--------------------------------- 170 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVF---DSKGGFYFTDFRGYSTNPLGGVYYVSPD--------------------------------- 170 (333)
T ss_dssp EECSSSSCCCEEEEEE---CTTSCEEEEECCCBTTBCCEEEEEECTT---------------------------------
T ss_pred EEccCccCCcccceEE---CCCCCEEEEeccccccCCCceEEEEeCC---------------------------------
Confidence 3331 12223445554 567777766543 2344444433
Q ss_pred cceeeEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcccC-ccCCCCCceeeec---eEeeccccceEEeEEC--
Q 003208 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAE-YWKDSDSIEEVGS---SVLYGHNARVWDCCLT-- 317 (839)
Q Consensus 245 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~-- 317 (839)
..+ +..+..+...+.+++|+|+++.|+ +.+.++.|.+||+... .. ...... ....++ ..+..++++
T Consensus 171 ~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-----~~~~~~~~~~~~~~~-~~~~~i~~d~~ 243 (333)
T 2dg1_A 171 FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-----IQPFGATIPYYFTGH-EGPDSCCIDSD 243 (333)
T ss_dssp SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-----EEEEEEEEEEECCSS-SEEEEEEEBTT
T ss_pred CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-----cccccceEEEecCCC-CCCCceEECCC
Confidence 111 112222335678999999998665 4456789999998642 22 111110 011222 356778887
Q ss_pred CCEEEEEeCCCeEEEEcCCCceEEEeecccC-----CceEEEEEccCCCEEEEEeCCC
Q 003208 318 DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAGFDS 370 (839)
Q Consensus 318 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~-----~~i~~~~~~~~~~~l~t~~~dg 370 (839)
+++.++...++.|.+|+.+++.+..+..+.. ..+.+++|+|++..|+.++.++
T Consensus 244 G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 5677777778999999998777777754432 0378899999987776665553
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.43 E-value=6e-11 Score=123.57 Aligned_cols=239 Identities=9% Similarity=0.112 Sum_probs=164.3
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcC------------------------cEEEEEEeeccCCCCCCCCCccccce
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGE------------------------KRVKLFELNFELSPNSQYQPETCVNL 122 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~ 122 (839)
.|.+|+++ |+|+ .+++..++ +.|.+||..++
T Consensus 25 ~v~~va~d-------~~G~---l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------------- 79 (329)
T 3fvz_A 25 QVSGVALD-------SKNN---LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------------- 79 (329)
T ss_dssp CEEEEEEC-------TTCC---EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---------------
T ss_pred CceEEEEC-------CCCC---EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---------------
Confidence 58999999 8883 44443445 26888887642
Q ss_pred eeeEec-cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-eEEEEec--------CCceeEEEEeeccCCc-
Q 003208 123 SLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHS--------PERCLLYSMKLWGDNL- 191 (839)
Q Consensus 123 ~~~~~~-~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-~~~~~~~--------~~~~~~~s~~~~~~~~- 191 (839)
+.+..+ .++-....+++++| +++++++...++.|++||..... .+..+.. ........+.+ ++
T Consensus 80 ~~~~~~~~~~~~~p~gia~d~---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~---~~~ 153 (329)
T 3fvz_A 80 EILQSSGKNLFYLPHGLSIDT---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV---EPS 153 (329)
T ss_dssp CEEEEECTTTCSSEEEEEECT---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE---CTT
T ss_pred eEEeccCCCccCCceEEEECC---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE---eCC
Confidence 233333 24556789999999 99988888888999999986542 4454421 11112344554 56
Q ss_pred cceEEEEee-cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe----------cCCCCeE
Q 003208 192 EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----------GHEGSIF 260 (839)
Q Consensus 192 ~~~~l~sg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~ 260 (839)
++.++++.+ .++.|++|+.. +..+..+. ++-....
T Consensus 154 ~g~lyv~d~~~~~~I~~~~~~----------------------------------g~~~~~~~~~g~~~~~~~~~~~~p~ 199 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFSPS----------------------------------GKFVTQWGEESSGSSPRPGQFSVPH 199 (329)
T ss_dssp TCCEEEEECSSCCEEEEECTT----------------------------------SCEEEEECEECCSSSCCTTEESCEE
T ss_pred CCeEEEEeCCCCCeEEEEcCC----------------------------------CCEEEEeccCCCCCCCCCcccCCCc
Confidence 677888876 68999999954 22333332 2334589
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEe--------CCCeEE
Q 003208 261 RIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG--------EDCTCR 331 (839)
Q Consensus 261 ~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~--------~dg~i~ 331 (839)
+|+++|+ +..+++...++.|++|+..+++. +..+ ....+...+..++|++..++... .+..++
T Consensus 200 gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-----~~~~---~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 200 SLALVPHLDQLCVADRENGRIQCFKTDTKEF-----VREI---KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE-----EEEE---CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEECCCCcE-----EEEE---eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence 9999998 67777777889999999986544 2211 22345667788888765444332 345899
Q ss_pred EEcC-CCceEEEee---cccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 332 VWGS-DGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 332 vw~~-~~~~~~~~~---~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|+. +++.+..+. .+.. .+..++++|+|.++++...++.|++|++++
T Consensus 272 ~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 272 VMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 9998 888888773 4444 588999999998888888899999999855
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=6.5e-10 Score=113.99 Aligned_cols=287 Identities=8% Similarity=-0.049 Sum_probs=183.5
Q ss_pred cCccccccCCCceeeeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEee-ecCceEEeEEecccccccC
Q 003208 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEG 81 (839)
Q Consensus 4 ~~i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~ 81 (839)
+.+..|.+.. ....+.+|++. ++ +++.++.. ++.|.+||.. ++. ..+.. .....+.+|++.
T Consensus 3 g~~~~~~~~~--~~~~~~~i~~d--~~----g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~------- 65 (299)
T 2z2n_A 3 FKLQELNLTN--QDTGPYGITVS--DK----GKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTIS------- 65 (299)
T ss_dssp EEEEEEECCS--SSCCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEEC-------
T ss_pred ceEEEEcCCC--cCCCccceEEC--CC----CCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEEC-------
Confidence 3445554432 23568999999 88 77777766 6899999987 553 33331 123468999998
Q ss_pred CCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEE
Q 003208 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (839)
Q Consensus 82 ~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~v 161 (839)
++|. .+++..+++.|..|+.+ .. ... ..+......+.++++.| ++.++++...++.|.+
T Consensus 66 ~~g~---l~v~~~~~~~i~~~~~~-g~-------------~~~-~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~ 124 (299)
T 2z2n_A 66 SDGE---VWFTENAANKIGRITKK-GI-------------IKE-YTLPNPDSAPYGITEGP---NGDIWFTEMNGNRIGR 124 (299)
T ss_dssp TTSC---EEEEETTTTEEEEECTT-SC-------------EEE-EECSSTTCCEEEEEECT---TSCEEEEETTTTEEEE
T ss_pred CCCC---EEEeCCCCCeEEEECCC-Cc-------------EEE-EeCCCcCCCceeeEECC---CCCEEEEecCCceEEE
Confidence 7773 44444557888888864 11 111 12223455789999998 8888777767889999
Q ss_pred EecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeec
Q 003208 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (839)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (839)
||. +++...............+.+ ++++.+.++...++.|..|+.. +
T Consensus 125 ~d~-~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~-g---------------------------- 171 (299)
T 2z2n_A 125 ITD-DGKIREYELPNKGSYPSFITL---GSDNALWFTENQNNAIGRITES-G---------------------------- 171 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-C----------------------------
T ss_pred ECC-CCCEEEecCCCCCCCCceEEE---cCCCCEEEEeCCCCEEEEEcCC-C----------------------------
Confidence 998 554433222212223444544 4677777776667888888863 1
Q ss_pred ccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC
Q 003208 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (839)
Q Consensus 242 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~ 319 (839)
......+..+...+.+++++++++..++...++.|..||. ++.. .. .....+...+.+++++ +.
T Consensus 172 ----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~~~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 172 ----DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI------TE---FKIPTPNARPHAITAGAGID 237 (299)
T ss_dssp ----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EECSSTTCCEEEEEECSTTC
T ss_pred ----cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE------EE---EECCCCCCCceeEEECCCCC
Confidence 1111112334567889999999987777767889999998 4433 11 1223345678899997 45
Q ss_pred EEEEEeCCCeEEEEcCCCceEEEe--ecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 320 FIITAGEDCTCRVWGSDGKQLKMI--KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~~~~~~~~~--~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..++...++.|.+|+.+++. ..+ ..+.. .+.++++ +++.+.++.. .+.+..++.+.
T Consensus 238 l~v~~~~~~~i~~~d~~g~~-~~~~~~~~~~-~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTSNNII-EEYPIQIKSA-EPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEEEETTTTEEEEEETTTEE-EEEECSSSSC-CEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred EEEeccCCceEEEECCCCce-EEEeCCCCCC-ccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 55555577899999986543 333 22333 5889999 8887666654 56777777643
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.41 E-value=3.2e-11 Score=129.54 Aligned_cols=269 Identities=9% Similarity=-0.091 Sum_probs=151.0
Q ss_pred eEEEECCCCeeeeEEeeecC----ceEEeEEecccccccCCCccceeeEEEEEc---CcEEEEEEeeccCCCCCCCCCcc
Q 003208 46 VLLYDLEAGTLIRPFQVFHG----IRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPET 118 (839)
Q Consensus 46 v~iwd~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~ 118 (839)
....|..+++.+..+..... ..+..++|+ |||+ .++.+.. +..|.+|++...
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-------pdG~---~l~~~~~~~g~~~l~~~d~~~~----------- 70 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFT-------QDGK---KLLFAGDFDGNRNYYLLNLETQ----------- 70 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBC-------TTSC---EEEEEECTTSSCEEEEEETTTT-----------
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCC-------CCCC---EEEEEEecCCCceEEEEECCCC-----------
Confidence 34557788877766654322 125667788 9984 3333332 246777776542
Q ss_pred ccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE
Q 003208 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (839)
Q Consensus 119 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s 198 (839)
+......++......+.|+| +++.|+.++.++.|.+||+.+++.......+.. + .+++..|+.
T Consensus 71 ----~~~~l~~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~-------~~~g~~l~~ 133 (396)
T 3c5m_A 71 ----QAVQLTEGKGDNTFGGFIST---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---W-------KGYGTWVAN 133 (396)
T ss_dssp ----EEEECCCSSCBCTTTCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---E-------EEEEEEEEC
T ss_pred ----cEEEeecCCCCccccceECC---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---c-------CCCCCEEEe
Confidence 22222223333233478999 999999999999999999988876554443322 1 122333333
Q ss_pred eecCCeEEEEEeeccccccCCCCCCCccCCCCC---------CCceeeEeecccccceeeEEEecCCCCeEEEEEcC-CC
Q 003208 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS---------SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CG 268 (839)
Q Consensus 199 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~ 268 (839)
.+.+....+|... ...+++++. .....+.+|+.. .++.. .+..+...+..+.|+| ++
T Consensus 134 ~~~~~~~~~~~~~-----------~~~spdg~~~~~~~~~~~~~~~~l~~~d~~-~g~~~-~~~~~~~~~~~~~~sp~dg 200 (396)
T 3c5m_A 134 SDCTKLVGIEILK-----------RDWQPLTSWEKFAEFYHTNPTCRLIKVDIE-TGELE-VIHQDTAWLGHPIYRPFDD 200 (396)
T ss_dssp TTSSEEEEEEEEG-----------GGCCCCCSHHHHHHHHHTCCCEEEEEEETT-TCCEE-EEEEESSCEEEEEEETTEE
T ss_pred ccCCccccccccc-----------cccCCCCcceeeeeeccCCCcceEEEEECC-CCcEE-eeccCCcccccceECCCCC
Confidence 3222222222210 000011100 011222223221 33322 2335677899999999 78
Q ss_pred CEEEEEeCC------CcEEEEEcccCccCCCCCceeeeceEeecc--ccceEEeEEC--CCEEEEEeCC-----CeEEEE
Q 003208 269 SKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT--DSFIITAGED-----CTCRVW 333 (839)
Q Consensus 269 ~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~~~d-----g~i~vw 333 (839)
+.|+..+.+ ..|.+||+..... + .+..+ ...+..++|+ ++.|+..+.+ +.|++|
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~-----~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 201 STVGFCHEGPHDLVDARMWLVNEDGSNV------R-----KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp EEEEEEECSCSSSCSCCCEEEETTSCCC------E-----ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred CEEEEEecCCCCCCCceEEEEECCCCce------e-----EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 877776654 3588888865443 1 22222 2357788998 4666665543 459999
Q ss_pred cC-CCceEEEeecccCCceEEEEEcc-CCCEEEEEe----------------CCCcEEEEecCCc
Q 003208 334 GS-DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAG----------------FDSAIKVHQFQAF 380 (839)
Q Consensus 334 ~~-~~~~~~~~~~h~~~~i~~~~~~~-~~~~l~t~~----------------~dg~i~iw~~~~~ 380 (839)
|+ +++.. .+..... .. +.|+| +|+++++++ .+..|.+||+.+.
T Consensus 270 d~~~g~~~-~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 270 NPETLENE-EVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CTTTCCEE-EEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred ECCCCCeE-EeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 99 45433 3332222 33 88999 999888765 3468999998553
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=8.2e-11 Score=122.33 Aligned_cols=258 Identities=8% Similarity=-0.057 Sum_probs=170.5
Q ss_pred CCeeEEEECCCCeeeeEEee-----ecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCc
Q 003208 43 GSQVLLYDLEAGTLIRPFQV-----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE 117 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~ 117 (839)
++.|.+||.++++....+.. .-+..+.+|.+. .+. .+++...++.|.+||..+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-------~~~----lyv~~~~~~~v~viD~~t----------- 73 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-------DGI----GWIVVNNSHVIFAIDINT----------- 73 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-------TTE----EEEEEGGGTEEEEEETTT-----------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-------CCE----EEEEEcCCCEEEEEECcc-----------
Confidence 58999999999987765521 112246777776 432 555556689999999976
Q ss_pred cccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC------ceeEEEEeeccCCc
Q 003208 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE------RCLLYSMKLWGDNL 191 (839)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~s~~~~~~~~ 191 (839)
++.+..+.. ......+++++ ++.+.++...++.|.+||..+++....+.... .. ..+.+ .
T Consensus 74 ----~~~~~~i~~-~~~p~~i~~~~---~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p--~~i~~----~ 139 (328)
T 3dsm_A 74 ----FKEVGRITG-FTSPRYIHFLS---DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST--EQMVQ----Y 139 (328)
T ss_dssp ----CCEEEEEEC-CSSEEEEEEEE---TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC--CCEEE----E
T ss_pred ----cEEEEEcCC-CCCCcEEEEeC---CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc--ceEEE----E
Confidence 345555532 35688999998 88555554478999999999998887776433 21 12222 2
Q ss_pred cceEEEEee-cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 192 EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 192 ~~~~l~sg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
++.++++.. .++.|.++|+. +.+.+..+.. ......++++|+|+.
T Consensus 140 ~~~lyv~~~~~~~~v~viD~~---------------------------------t~~~~~~i~~-g~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDTE---------------------------------TDKVVDELTI-GIQPTSLVMDKYNKM 185 (328)
T ss_dssp TTEEEEEECTTCCEEEEEETT---------------------------------TTEEEEEEEC-SSCBCCCEECTTSEE
T ss_pred CCEEEEEcCCCCCEEEEEECC---------------------------------CCeEEEEEEc-CCCccceEEcCCCCE
Confidence 344444443 48899999988 5555555543 234578899999987
Q ss_pred EEEEeCC----------CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CC
Q 003208 271 LVSVSDD----------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG 337 (839)
Q Consensus 271 l~s~s~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~ 337 (839)
++++..+ +.|.++|..+.+. .+.+ . ......+..++++ ++.++.+.. .|.+||. ++
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-----~~~~---~-~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTV-----EKQF---K-FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEE-----EEEE---E-CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeE-----EEEE---e-cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 7776654 7899999987654 2211 1 1112367889998 577777654 8999999 55
Q ss_pred ceEEE--eecccCCceEEEEEcc-CCCEEEEE----eCCCcEEEEecCCcCc
Q 003208 338 KQLKM--IKEHIGRGIWRCLYDS-LSSLLVTA----GFDSAIKVHQFQAFLP 382 (839)
Q Consensus 338 ~~~~~--~~~h~~~~i~~~~~~~-~~~~l~t~----~~dg~i~iw~~~~~~~ 382 (839)
+.... +..... ....++++| ++.++++. ..++.|.+||.+++.+
T Consensus 255 ~~~~~~~~~~~~~-~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 255 RVPVRPFLEFRDT-KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp SCCSSCSBCCCSS-CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEE
T ss_pred ceeeeeeecCCCC-ceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEE
Confidence 44211 111123 578999999 55666665 5688999999875433
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=1.6e-10 Score=133.35 Aligned_cols=243 Identities=11% Similarity=-0.016 Sum_probs=154.5
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEE--c-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceE------
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALF--G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF------ 136 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~--~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~------ 136 (839)
..+..++++ +++ .+++.. . ++...||..... .....+..|...+.
T Consensus 24 ~~~~~~~~s-------~~~----~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~ 77 (662)
T 3azo_A 24 GRPACVGAV-------GDE----VWWVAPRPAEAGRATLVRRRAD---------------GAEESALPAPWNVRNRVFEY 77 (662)
T ss_dssp SCCEEEEEE-------TTE----EEEEEEETTTTTEEEEEEECTT---------------SCEEESSCTTCCBCCCGGGT
T ss_pred CccceeEEc-------CCe----EEEEecCcccCCcEEEEEECCC---------------CCcceeCCCCcccccccccc
Confidence 358888888 664 445544 2 678999997432 12334555555555
Q ss_pred ---EEEEe--eccCCCcE-EEEEeC-CCcEEEEecC--C-CceEEEEecC----CceeEEEEeeccCCccceEEEEeecC
Q 003208 137 ---DVCFL--KVCNGNRS-LAIGCS-DNSIRVWDIS--N-SSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 137 ---~~~~~--~~~~~~~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
...|+ | +++. |+.++. +..|.++++. . +. ...+... .......+.+ +|++..|++++.+
T Consensus 78 ~~~~~~~~~SP---Dg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~---spDg~~l~~~~~~ 150 (662)
T 3azo_A 78 SGFPWAGVPRP---AGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVL---LPERGEVWCMAEE 150 (662)
T ss_dssp CCCCEEEECCS---SSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEE---ETTTTEEEEEEEE
T ss_pred CCccceeeeec---CCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEE---CCCCCEEEEEEec
Confidence 56565 8 8988 776553 4567777765 2 33 3344331 2233445555 6899999988876
Q ss_pred ----------CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcCCCCEE
Q 003208 203 ----------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 203 ----------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l 271 (839)
..|++|++...... ..+. ...+. .+...+..++|+|||++|
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~---------------------------~~~~-~~~l~~~~~~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAA---------------------------DRSA-VRELSDDAHRFVTGPRLSPDGRQA 202 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTT---------------------------CGGG-SEESSCSCSSEECCCEECTTSSEE
T ss_pred ccCCCCCCceeEEEEEECCCCccc---------------------------cCCc-eeEEEecCCCcccCceECCCCCEE
Confidence 57888888710000 0022 23444 556788889999999999
Q ss_pred EEEeCCC--------cEEEEEcc-cCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCC--eEEEEcC-CC
Q 003208 272 VSVSDDR--------SARIWEVR-AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC--TCRVWGS-DG 337 (839)
Q Consensus 272 ~s~s~d~--------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg--~i~vw~~-~~ 337 (839)
+.++.++ .|++||+. ++.. .... ....+|...+..+.|+ +++++++..++ .|.+|+. .+
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~------~~~~-~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRF------ADTR-TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCE------EEEE-EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcc------cccE-EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence 9887553 79999998 4411 0111 1334456789999998 56778888888 6777777 45
Q ss_pred ceEEEeecccCC-------ceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 338 KQLKMIKEHIGR-------GIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 338 ~~~~~~~~h~~~-------~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.......+... .+..++|+|++++++++.. +.+++|.+
T Consensus 276 ~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 276 AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 443333322210 1457889999999999998 99999954
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.40 E-value=4.7e-12 Score=136.10 Aligned_cols=271 Identities=13% Similarity=-0.005 Sum_probs=161.2
Q ss_pred eeEEEEecCCCCCCCcceEEEee--C--CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~--~--~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
+.+++|+ || +++|+... + ..|.+||+.+++...... ........+.|+ |||+ .++.+..
T Consensus 38 ~~~~~~S--pd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~s-------pdg~---~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFT--QD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFIS-------TDER---AFFYVKN 100 (396)
T ss_dssp TTSCCBC--TT----SCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEEC-------TTSS---EEEEEET
T ss_pred eecCcCC--CC----CCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceEC-------CCCC---EEEEEEc
Confidence 6788999 99 77766654 2 378999998887544332 222212337788 9984 5556666
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEE-------------------EEEeeccCCCcEEEEE---
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD-------------------VCFLKVCNGNRSLAIG--- 153 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-------------------~~~~~~~~~~~~las~--- 153 (839)
++.|.+|++.... .......+..+... +.++| +++.++.+
T Consensus 101 ~~~l~~~d~~~~~---------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp---dg~~~~~~~~~ 162 (396)
T 3c5m_A 101 ELNLMKVDLETLE---------------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP---LTSWEKFAEFY 162 (396)
T ss_dssp TTEEEEEETTTCC---------------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC---CCSHHHHHHHH
T ss_pred CCcEEEEECCCCC---------------cEEEEecccccCCCCCEEEeccCCccccccccccccCC---CCcceeeeeec
Confidence 7889999987532 22222223333332 34556 66665543
Q ss_pred --eCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-cceEEEEeecC------CeEEEEEeeccccccCCCCCCC
Q 003208 154 --CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEG 224 (839)
Q Consensus 154 --~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~d------g~i~vw~~~~~~~~~~~~~~~~ 224 (839)
..+..|.+||+.+++......... .+..+.+ ++ ++..|+..+.+ ..|.+|++.
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------- 224 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQDTA--WLGHPIY---RPFDDSTVGFCHEGPHDLVDARMWLVNED------------- 224 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCSSSCSCCCEEEETT-------------
T ss_pred cCCCcceEEEEECCCCcEEeeccCCc--ccccceE---CCCCCCEEEEEecCCCCCCCceEEEEECC-------------
Confidence 356789999998877654443222 2233333 46 67766665443 357777765
Q ss_pred ccCCCCCCCceeeEeecccccceeeEEEecC--CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcccCccCCCCCce
Q 003208 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIE 297 (839)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~ 297 (839)
... ...+..+ ...+..+.|+|++++|+.++.+ +.|++||+.+++. +
T Consensus 225 --------------------~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~ 277 (396)
T 3c5m_A 225 --------------------GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN------E 277 (396)
T ss_dssp --------------------SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE------E
T ss_pred --------------------CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe------E
Confidence 111 1122222 2357889999999988777654 4499999987654 1
Q ss_pred eeeceEeeccccceEEeEEC---CCEEEEEe----------------CCCeEEEEcCCCceEEEeecccCC---------
Q 003208 298 EVGSSVLYGHNARVWDCCLT---DSFIITAG----------------EDCTCRVWGSDGKQLKMIKEHIGR--------- 349 (839)
Q Consensus 298 ~~~~~~~~~h~~~v~~~~~~---~~~l~s~~----------------~dg~i~vw~~~~~~~~~~~~h~~~--------- 349 (839)
.+. ...+ .. +.|+ +.+++.++ .+..|++||+.+.....+..+...
T Consensus 278 ~l~--~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 278 EVM--VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp EEE--ECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred Eee--eCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 111 1111 12 5564 46676654 347899999943334445444431
Q ss_pred -ceEEEEEccCCCEEEEEeC-CCcEEEEec
Q 003208 350 -GIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (839)
Q Consensus 350 -~i~~~~~~~~~~~l~t~~~-dg~i~iw~~ 377 (839)
.+..++|+|+|+.|+.++. ++...+|.+
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1456789999998877664 566666655
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=3.5e-09 Score=108.51 Aligned_cols=275 Identities=11% Similarity=-0.023 Sum_probs=178.2
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
..+.+|++. ++|+ .+++...++.|.+|+.. .. ... ..+..+...+.++++.+
T Consensus 15 ~~~~~i~~d-------~~g~---l~v~~~~~~~v~~~d~~-~~-------------~~~-~~~~~~~~~~~~i~~~~--- 66 (299)
T 2z2n_A 15 TGPYGITVS-------DKGK---VWITQHKANMISCINLD-GK-------------ITE-YPLPTPDAKVMCLTISS--- 66 (299)
T ss_dssp CCEEEEEEC-------TTSC---EEEEETTTTEEEEECTT-CC-------------EEE-EECSSTTCCEEEEEECT---
T ss_pred CCccceEEC-------CCCC---EEEEecCCCcEEEEcCC-CC-------------eEE-ecCCcccCceeeEEECC---
Confidence 368999999 8873 44444457899999876 32 221 12223456789999998
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecC-CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCC
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~ 224 (839)
++.+.++...++.|..||.. ++ ...+..+ .......+.+ .+++.+.++...++.|..|+..
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~d~~------------- 128 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITE---GPNGDIWFTEMNGNRIGRITDD------------- 128 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-------------
T ss_pred CCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEE---CCCCCEEEEecCCceEEEECCC-------------
Confidence 88887777668889999986 33 2233222 2223445554 4677777777677889988864
Q ss_pred ccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
..........+...+.+++++++++.+++...++.|..||. ++.. .. ...
T Consensus 129 --------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~ 178 (299)
T 2z2n_A 129 --------------------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI------TE---FKI 178 (299)
T ss_dssp --------------------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE------EE---EEC
T ss_pred --------------------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE------EE---eeC
Confidence 11111122234567899999999987777777789999998 4433 11 112
Q ss_pred eccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEE-eecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcC
Q 003208 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (839)
Q Consensus 305 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~-~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~ 381 (839)
......+..+++. +.+.++...++.|.+|+.+++.... +..+.. .+.+++++++|+++++...++.|..|+.++.
T Consensus 179 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~- 256 (299)
T 2z2n_A 179 PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA-RPHAITAGAGIDLWFTEWGANKIGRLTSNNI- 256 (299)
T ss_dssp SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEEETTTE-
T ss_pred CCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC-CceeEEECCCCCEEEeccCCceEEEECCCCc-
Confidence 2334567888887 4666666668899999995553322 222233 5889999999987766657889999997431
Q ss_pred ccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEe
Q 003208 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (839)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~ 447 (839)
. .....+ .....+.++++ +++.+++++..+.+..++.
T Consensus 257 ~------------------~~~~~~----------~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 257 I------------------EEYPIQ----------IKSAEPHGICF-DGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp E------------------EEEECS----------SSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred e------------------EEEeCC----------CCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence 1 011111 11234788999 8899998877777766554
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.37 E-value=2.9e-09 Score=118.02 Aligned_cols=273 Identities=10% Similarity=-0.004 Sum_probs=179.3
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+.++++.. ++.|.++|..+++.+.++.... .++++.++ |||+ .+++++.++.|.+||+....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~S-------pDGr---~lyv~~~dg~V~viD~~~~t----- 229 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLS-------ASGR---YLFVIGRDGKVNMIDLWMKE----- 229 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEEC-------TTSC---EEEEEETTSEEEEEETTSSS-----
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEEC-------CCCC---EEEEEcCCCeEEEEECCCCC-----
Confidence 34444444 7999999999999999988643 58899999 9985 66666778999999985211
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEe----eccCCCcEEEEEeC-CCcEEEEecCCCceEEEEecCC----------c
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFL----KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPE----------R 178 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~----~~~~~~~~las~~~-d~~i~vwd~~~~~~~~~~~~~~----------~ 178 (839)
.+.+..+....+ ...++|+ | ++++++++.. ++.|.|+|..+.+.+..+.... .
T Consensus 230 --------~~~v~~i~~G~~-P~~ia~s~~~~p---DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 230 --------PTTVAEIKIGSE-ARSIETSKMEGW---EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp --------CCEEEEEECCSE-EEEEEECCSTTC---TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred --------CcEeEEEecCCC-CceeEEccccCC---CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 345555554333 5789999 7 8988876654 6999999999999888765321 1
Q ss_pred eeEEEEeeccCCcc-ceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 179 CLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 179 ~~~~s~~~~~~~~~-~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
..+..+.. +++ ...+++....|.|.++|.... ....+..+ ....
T Consensus 298 ~rva~i~~---s~~~~~~vv~~~~~g~v~~vd~~~~-------------------------------~~~~v~~i-~~~~ 342 (567)
T 1qks_A 298 PRVAAILA---SHYRPEFIVNVKETGKILLVDYTDL-------------------------------NNLKTTEI-SAER 342 (567)
T ss_dssp CCEEEEEE---CSSSSEEEEEETTTTEEEEEETTCS-------------------------------SEEEEEEE-ECCS
T ss_pred CceEEEEE---cCCCCEEEEEecCCCeEEEEecCCC-------------------------------ccceeeee-eccc
Confidence 11222322 233 445566666789999987610 01112222 2334
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeece-EeeccccceEEeEECC--C-EEEEEe-CCCeEE
Q 003208 258 SIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLTD--S-FIITAG-EDCTCR 331 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~--~-~l~s~~-~dg~i~ 331 (839)
....+.|+|++++++++. .++.|.++|..+.+. ...+. . ....|..+-..+ +++ . ..++.. .+++|.
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-----~~~i~-vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-----VAIED-TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVA 415 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----EEEEe-ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEE
Confidence 567889999999887665 578999999998765 22221 1 112343322222 332 3 444543 468999
Q ss_pred EEcC-C-------CceEEEeecccCCceEEEEEccCCCEEEEEeC-------CCcEEEEecCC
Q 003208 332 VWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-------DSAIKVHQFQA 379 (839)
Q Consensus 332 vw~~-~-------~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~-------dg~i~iw~~~~ 379 (839)
++|. . .+.+.++..... +-..+..+|+++++.+... .+.|.++|+..
T Consensus 416 vid~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 416 LIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 9998 4 456777765533 2345778999998888663 35999999854
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.37 E-value=1.2e-10 Score=121.87 Aligned_cols=232 Identities=11% Similarity=0.007 Sum_probs=151.2
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
.|.++.|+ +++. .+.....++.++.|. .+....+..+...+.+++|+| +
T Consensus 7 ~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---~ 55 (333)
T 2dg1_A 7 DLPTLFYS-------GKSN---SAVPIISESELQTIT------------------AEPWLEISKKGLQLEGLNFDR---Q 55 (333)
T ss_dssp CCCBCCSC-------GGGG---CSSCCCCGGGSCEEE------------------CEEEEEEESSCCCEEEEEECT---T
T ss_pred ccceeeec-------CCcc---ceeEEeecccCcccc------------------cceeEEEeccCccccCcEECC---C
Confidence 46777777 5542 233335577888882 233445556777789999998 9
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC----CeEEEEEeeccccccCCCCC
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSP 222 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d----g~i~vw~~~~~~~~~~~~~~ 222 (839)
+++++++..++.|.+||..+++.......+ ...+.++.+ ++++.++++...+ +.|.+||..
T Consensus 56 g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~---~~dg~l~v~~~~~~~~~~~i~~~d~~----------- 120 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKI---HKDGRLFVCYLGDFKSTGGIFAATEN----------- 120 (333)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEE---CTTSCEEEEECTTSSSCCEEEEECTT-----------
T ss_pred CCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEE---CCCCcEEEEeCCCCCCCceEEEEeCC-----------
Confidence 998888888999999999887765443222 223455555 5778877776665 689999876
Q ss_pred CCccCCCCCCCceeeEeecccccceeeEEEe--cCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcccCccCCCC
Q 003208 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD------DRSARIWEVRAEYWKDSD 294 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~ 294 (839)
.......+. .+...+..++++|+++.+++... .+.|..+|..+.+.
T Consensus 121 ----------------------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~---- 174 (333)
T 2dg1_A 121 ----------------------GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV---- 174 (333)
T ss_dssp ----------------------SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----
T ss_pred ----------------------CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----
Confidence 222221121 24467899999999987777654 24455555544332
Q ss_pred CceeeeceEeeccccceEEeEEC--CCEE-EEEeCCCeEEEEcC--CCceEEEe--------ecccCCceEEEEEccCCC
Q 003208 295 SIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGS--DGKQLKMI--------KEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 295 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~--~~~~~~~~--------~~h~~~~i~~~~~~~~~~ 361 (839)
. .+..+...+..++|+ ++.+ ++...++.|.+|+. .+..+..+ ..+ . .+..++++++|+
T Consensus 175 --~-----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~-~~~~i~~d~~G~ 245 (333)
T 2dg1_A 175 --T-----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E-GPDSCCIDSDDN 245 (333)
T ss_dssp --E-----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S-EEEEEEEBTTCC
T ss_pred --E-----EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C-CCCceEECCCCC
Confidence 1 222223456788888 3445 45556889999998 34433221 112 2 477899999999
Q ss_pred EEEEEeCCCcEEEEecCC
Q 003208 362 LLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 362 ~l~t~~~dg~i~iw~~~~ 379 (839)
++++...++.|.+|+.++
T Consensus 246 l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEEEETTTEEEEECTTS
T ss_pred EEEEEcCCCEEEEECCCC
Confidence 888888889999999854
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.36 E-value=7.5e-10 Score=116.40 Aligned_cols=239 Identities=12% Similarity=0.085 Sum_probs=150.2
Q ss_pred CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-C--cE--EEEEEeeccCCCCCCCCCc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E--KR--VKLFELNFELSPNSQYQPE 117 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~--~~--i~iw~~~~~~~~~~~~~~~ 117 (839)
++.|.+||+.+++.. .+ ..+..++|+ |||+ .++.+.. + +. |.+|++..
T Consensus 42 ~~~l~~~d~~~~~~~-~l-----~~~~~~~~S-------pDg~---~la~~~~~~~~~~~~l~~~~~~~----------- 94 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-----ENATMPRIS-------PDGK---KIAFMRANEEKKVSEIWVADLET----------- 94 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-----ESCEEEEEC-------TTSS---EEEEEEEETTTTEEEEEEEETTT-----------
T ss_pred cceEEEEeCCCCceE-Ec-----ccCCCeEEC-------CCCC---EEEEEEeccCCCcceEEEEECCC-----------
Confidence 467999999987643 23 247889999 9984 3333332 2 44 55555543
Q ss_pred cccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC---------------------------CcEEEEecCCCceE
Q 003208 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---------------------------NSIRVWDISNSSII 170 (839)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d---------------------------~~i~vwd~~~~~~~ 170 (839)
++...... +.. +..++|+| +++.|+.++.+ ..|.+||+.+++.+
T Consensus 95 ----g~~~~l~~-~~~-~~~~~wsp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 95 ----LSSKKILE-AKN-IRSLEWNE---DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp ----TEEEEEEE-ESE-EEEEEECT---TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred ----CceEEEEc-CCC-ccceeECC---CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 22222222 223 89999999 99988877632 57899999888764
Q ss_pred EEEecCCceeEEEEeeccCCccceEEEEeecCC-------eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg-------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
..+..+ .+..+.+ ++++ +++++..+. ...+|.+.
T Consensus 166 ~~l~~~---~~~~~~~---spdg-~~~~~~~~~~~~~~~~~~~l~~~d-------------------------------- 206 (347)
T 2gop_A 166 EEFEKP---RFSSGIW---HRDK-IVVNVPHREIIPQYFKFWDIYIWE-------------------------------- 206 (347)
T ss_dssp EEEEEE---TTCEEEE---ETTE-EEEEEECCCSSCCSSCCEEEEEEE--------------------------------
T ss_pred eeecCC---CcccccC---CCCe-EEEEEecccccccccccccEEEeC--------------------------------
Confidence 444331 2233333 4778 777765542 34555543
Q ss_pred ccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcccCccCCCCCceeeeceEeeccccceEE-e
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD--------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-C 314 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~ 314 (839)
.++. ..+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++. . ....+|...+.. +
T Consensus 207 -~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~------~----~l~~~~~~~~~~~~ 269 (347)
T 2gop_A 207 -DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV------M----GILDEVDRGVGQAK 269 (347)
T ss_dssp -TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE------E----ESSTTCCSEEEEEE
T ss_pred -CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce------E----eccccCCcccCCcc
Confidence 1221 222233 455554 9999998887754 3677777 3322 1 123345667775 8
Q ss_pred EECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcE-EEEecC
Q 003208 315 CLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI-KVHQFQ 378 (839)
Q Consensus 315 ~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i-~iw~~~ 378 (839)
.|++.++++++.++.+++| + +++... +..+.. .|.+++++| .++++++.++.. .+|.++
T Consensus 270 ~~sdg~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~-~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 270 IKDGKVYFTLFEEGSVNLY-IWDGEIKP-IAKGRH-WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEEEEETTEEEEE-EESSSEEE-EECSSS-EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEcCcEEEEEecCCcEEEE-EcCCceEE-EecCCC-eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 8874488889999999999 8 566543 334455 689999999 677777777665 777764
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.35 E-value=1.3e-10 Score=122.38 Aligned_cols=248 Identities=7% Similarity=0.042 Sum_probs=154.7
Q ss_pred CcCccccccCCCc--eeeeeeEEEEecCCCCCCCcceEEEee-C---C--eeEEEECCCCeeeeEEeeecCceEEeEEec
Q 003208 3 KKDLSEWRLDVGQ--YLGEISALCFVHLPSHLSSLPFLLAGS-G---S--QVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (839)
Q Consensus 3 d~~i~~w~~~~~~--~~~~Vt~l~f~~~~~~~~~~~~l~~g~-~---~--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 74 (839)
+++|.+|++.+++ ....+.+++|+ || +++|+... + + .|.+||+.+++....... . . +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l~~~~~~~~S--pD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIENATMPRIS--PD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEEESCEEEEEC--TT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEEC
T ss_pred cceEEEEeCCCCceEEcccCCCeEEC--CC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeEC
Confidence 4567888888765 23568889999 99 77666654 2 3 488889888876554443 2 2 8899999
Q ss_pred ccccccCCCccceeeEEEEEc---------------------------CcEEEEEEeeccCCCCCCCCCccccceeeeEe
Q 003208 75 FINCTEGSVSTRVTFEVALFG---------------------------EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (839)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~---------------------------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (839)
|||+ .++.++. ...|.+|++..+ +.+..
T Consensus 113 -------pdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---------------~~~~~ 167 (347)
T 2gop_A 113 -------EDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---------------EVIEE 167 (347)
T ss_dssp -------TTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT---------------EEEEE
T ss_pred -------CCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC---------------eEEee
Confidence 8884 3444332 256777877642 22122
Q ss_pred ccCCCcceEEEEEeeccCCCcEEEEEeCCC-------cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~las~~~d~-------~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
+.. . .+..++|+| ++ +++++..+. ...||.+.+++ ...+..+ .....+ +|++..|+.++
T Consensus 168 l~~-~-~~~~~~~sp---dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~~-----spdg~~l~~~~ 233 (347)
T 2gop_A 168 FEK-P-RFSSGIWHR---DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFYAV-----DSDGERILLYG 233 (347)
T ss_dssp EEE-E-TTCEEEEET---TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEEEE-----EECSSCEEEEE
T ss_pred ecC-C-CcccccCCC---Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC--cceeeE-----CCCCCEEEEEE
Confidence 222 2 688999999 88 777776542 34555444443 3333222 112222 57888887766
Q ss_pred cC--------CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEE-EEEcCCCCEE
Q 003208 201 IY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-IEWSSCGSKL 271 (839)
Q Consensus 201 ~d--------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l 271 (839)
.+ ..|.+|| . ++......+|...+.. +.|+ ++ .+
T Consensus 234 ~~~~~~~~~~~~l~~~d-~----------------------------------~~~~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD-G----------------------------------KEVMGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp CCSSSCCCSSCEEEEEC-S----------------------------------SCEEESSTTCCSEEEEEEEET-TE-EE
T ss_pred ccccCCccccceEEEEC-C----------------------------------CceEeccccCCcccCCccEEc-Cc-EE
Confidence 43 3566666 3 1222223456677886 8999 88 88
Q ss_pred EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeE-EEEcCCCceEEEeecccC
Q 003208 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTC-RVWGSDGKQLKMIKEHIG 348 (839)
Q Consensus 272 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i-~vw~~~~~~~~~~~~h~~ 348 (839)
++++.++.+++| +.+++. . .+..+...|.++.|++..+++++.++.. .+|.+++ ....+..++.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~------~-----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~g-~~~~lt~~n~ 341 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEI------K-----PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDG-EEKQLTDYND 341 (347)
T ss_dssp EEEEETTEEEEE-EESSSE------E-----EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEESS-SEEECCCTTS
T ss_pred EEEecCCcEEEE-EcCCce------E-----EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeCC-cEEEeccccH
Confidence 999999999999 874322 1 3344567888999988666677766654 5665443 3444555443
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.35 E-value=2.1e-10 Score=117.59 Aligned_cols=235 Identities=11% Similarity=-0.044 Sum_probs=154.0
Q ss_pred eEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
...+++|+ |+|+ .++.+. .++.|..|+... . ...+..+...+.+++++|
T Consensus 29 ~~eg~~~d-------~~g~---~l~~~~~~~~~i~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~--- 78 (296)
T 3e5z_A 29 WTEGPVYV-------PARS---AVIFSDVRQNRTWAWSDDG---------------Q--LSPEMHPSHHQNGHCLNK--- 78 (296)
T ss_dssp SEEEEEEE-------GGGT---EEEEEEGGGTEEEEEETTS---------------C--EEEEESSCSSEEEEEECT---
T ss_pred cccCCeEe-------CCCC---EEEEEeCCCCEEEEEECCC---------------C--eEEEECCCCCcceeeECC---
Confidence 47789999 7773 345444 578999998763 2 344455677899999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCc---eeEEEEeeccCCccceEEEE----eecC-----------CeEEE
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPER---CLLYSMKLWGDNLEALRIAS----GTIY-----------NEIIV 207 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~s----g~~d-----------g~i~v 207 (839)
++.++++...++.|.+||..+++.......... .....+.+ ++++.++++ |+.+ +.-.|
T Consensus 79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL---APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE---CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE---CCCCCEEEECCccccccccccccccccCCCcEE
Confidence 999887776678999999988775433221111 11122333 577887776 3310 11234
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
|.+. ....+..+..+.....+++|+|+++.+++.+.++.|++|++..
T Consensus 156 ~~~~---------------------------------~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 156 FRLA---------------------------------PDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp EEEC---------------------------------TTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred EEEC---------------------------------CCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence 4443 1122333455667789999999999887778889999999873
Q ss_pred CccCCCCCc-eeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEE-ccCCCEE
Q 003208 288 EYWKDSDSI-EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLL 363 (839)
Q Consensus 288 ~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~-~~~~~~l 363 (839)
... + .... .+..+...+..++++ +++.++. ++.|.+|+..++.+..+..+.. +.+++| .|+++.|
T Consensus 203 ~g~-----~~~~~~--~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 203 RGE-----TEYQGV--HFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp SSC-----EEEEEE--EECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC--CCEEEEESTTSCEE
T ss_pred CCc-----CcCCCe--EeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC--ceeEEEECCCCCEE
Confidence 211 1 1111 123344556678887 4554444 8899999999888888877664 788999 5888888
Q ss_pred EEEeCCCcEEEEecCC
Q 003208 364 VTAGFDSAIKVHQFQA 379 (839)
Q Consensus 364 ~t~~~dg~i~iw~~~~ 379 (839)
++++.++ +.-++++.
T Consensus 272 ~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 272 YMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEETTE-EEEEECSC
T ss_pred EEEcCCe-EEEEEccc
Confidence 8888764 33444444
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.31 E-value=6.4e-09 Score=115.22 Aligned_cols=306 Identities=9% Similarity=-0.004 Sum_probs=187.6
Q ss_pred CCcCccccccCCCceee------eeeEEEEecCCCCCCCcceEEEee-CCeeEEEECC--CCeeeeEEeeecCceEEeEE
Q 003208 2 GKKDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGIS 72 (839)
Q Consensus 2 ~d~~i~~w~~~~~~~~~------~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~--~~~~~~~~~~~~~~~v~~i~ 72 (839)
.+++|.++|..+++... .+..++|+ || ++++++++ ++.|.+||+. +++.+.++... .....++
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~S--pD----Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia 246 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLS--AS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIE 246 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEEeCCCCccceEEC--CC----CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeE
Confidence 57889999999876332 34689999 99 88888777 7899999996 88888888763 3478899
Q ss_pred ecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccC----------CCc-ceEEEEE
Q 003208 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR----------LSH-WVFDVCF 140 (839)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~-~I~~~~~ 140 (839)
|++- ..|||+ .++++ ..+++|.|+|..+ ++.+..+.. |.. .+..+..
T Consensus 247 ~s~~---~~pDGk---~l~v~n~~~~~v~ViD~~t---------------~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 247 TSKM---EGWEDK---YAIAGAYWPPQYVIMDGET---------------LEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp ECCS---TTCTTT---EEEEEEEETTEEEEEETTT---------------CCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred Eccc---cCCCCC---EEEEEEccCCeEEEEECCC---------------CcEEEEEeccccccccccccCCCceEEEEE
Confidence 9810 002774 34433 4479999999764 333333221 222 5778888
Q ss_pred eeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee-cCCeEEEEEeeccccccC
Q 003208 141 LKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 141 ~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~-~dg~i~vw~~~~~~~~~~ 218 (839)
++ ++. ++++...+|.|.++|..+...+.............+.+ ++++.+++++. .++.|.++|..
T Consensus 306 s~---~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~---~pdgr~~~va~~~sn~V~ViD~~------- 372 (567)
T 1qks_A 306 SH---YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL---DGSHRYFITAANARNKLVVIDTK------- 372 (567)
T ss_dssp CS---SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE---CTTSCEEEEEEGGGTEEEEEETT-------
T ss_pred cC---CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE---CCCCCEEEEEeCCCCeEEEEECC-------
Confidence 87 554 45555667999999998765433222111122333333 67888876654 57899999988
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEec-----CCCCeEEEEEcCCCCEEE-EEe-CCCcEEEEEcccCccC
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-----HEGSIFRIEWSSCGSKLV-SVS-DDRSARIWEVRAEYWK 291 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~-s~s-~d~~i~iwd~~~~~~~ 291 (839)
+.+.+..+.- |.+.-..+ ++|++..++ +.. .+++|.++|.......
T Consensus 373 --------------------------t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 373 --------------------------EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp --------------------------TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred --------------------------CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 4444433332 43222222 578755554 443 4689999998863210
Q ss_pred CCCCceeeeceEeeccccceEEeEEC--CCEEEEEeC-------CCeEEEEcC-CC------ceEEEeec-------ccC
Q 003208 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-------DCTCRVWGS-DG------KQLKMIKE-------HIG 348 (839)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~-------dg~i~vw~~-~~------~~~~~~~~-------h~~ 348 (839)
....+.+. .+......-..++.+ ++++..... ..+|.++|+ +. +....+.. ..+
T Consensus 426 -~~~~kvv~--~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (567)
T 1qks_A 426 -DNAWKILD--SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ 502 (567)
T ss_dssp -TTBTSEEE--EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred -cccCEEEE--EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC
Confidence 00012222 222222222334555 456666542 459999998 33 12233321 123
Q ss_pred CceEEEEEccCCCEEEEEe-----CCCcEEEEecCC
Q 003208 349 RGIWRCLYDSLSSLLVTAG-----FDSAIKVHQFQA 379 (839)
Q Consensus 349 ~~i~~~~~~~~~~~l~t~~-----~dg~i~iw~~~~ 379 (839)
+.+..+.|+++|+.+..+. .++.|.++|.++
T Consensus 503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 3588999999998776653 379999999855
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=8.1e-10 Score=111.15 Aligned_cols=209 Identities=9% Similarity=0.047 Sum_probs=149.1
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC-cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
.+++.++++.|.+||.++ ++.+..+..+. ..+.++.+.| ++++++ +.++.|..||. ++
T Consensus 7 ~lv~~~~~~~v~~~d~~t---------------G~~~w~~~~~~~~~~~~~~~~p---dG~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDT---------------KEIVWEYPLEKGWECNSVAATK---AGEILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp EEEECTTCSEEEEEETTT---------------TEEEEEEECCTTCCCCEEEECT---TSCEEE--ECBSEEEEECT-TS
T ss_pred EEEeeCCCCEEEEEECCC---------------CeEEEEeCCCccCCCcCeEECC---CCCEEE--eCCCCEEEECC-CC
Confidence 455556689999999865 55667776665 4789999999 999888 35788999999 89
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
+.+.++..+....+.++.. .+++.++++.+. ++.|..++.. +
T Consensus 66 ~~~W~~~~~~~~~~~~~~~---~~dG~~lv~~~~~~~~v~~vd~~----------------------------------G 108 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARI---LPDGNALVAWCGHPSTILEVNMK----------------------------------G 108 (276)
T ss_dssp CEEEEEECCTTCEEEEEEE---CTTSCEEEEEESTTEEEEEECTT----------------------------------S
T ss_pred CEEEEEcCCCCccccccEE---CCCCCEEEEecCCCCEEEEEeCC----------------------------------C
Confidence 9988887654344555554 588999998776 6677666643 2
Q ss_pred eeeEEEe------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--C
Q 003208 247 VNLFRLV------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D 318 (839)
Q Consensus 247 ~~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~ 318 (839)
+.+..+. ++......+++.++|+++++...++.|..||.. ++. +. .+... ..+.++... +
T Consensus 109 k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-----~w-----~~~~~-~~~~~~~~~~~g 176 (276)
T 3no2_A 109 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-----LN-----SVKLS-GTPFSSAFLDNG 176 (276)
T ss_dssp CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-----EE-----EEECS-SCCCEEEECTTS
T ss_pred CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-----EE-----EEECC-CCccceeEcCCC
Confidence 2222221 222345567789999999999999999999998 544 11 22222 234444554 6
Q ss_pred CEEEEEeCCCeEEEEcC-CCceEEEeecccC-----CceEEEEEccCCCEEEEEe
Q 003208 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 319 ~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~-----~~i~~~~~~~~~~~l~t~~ 367 (839)
+.++++..++.|..+|. +|+.+.++..... .-+..++..++|.++++..
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 78888888889999999 5999998875431 1267888899999888874
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=9.3e-09 Score=105.31 Aligned_cols=274 Identities=9% Similarity=-0.029 Sum_probs=174.4
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeee-cCceEEeEEecccccccCCCccceeeEEEEEc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (839)
..+.+|++. ++ +++.++.. ++.|.+||.. ++... +... ....+.+|++. ++|+ .+++..+
T Consensus 20 ~~p~~i~~d--~~----g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-------~~g~---l~v~~~~ 81 (300)
T 2qc5_A 20 SGPYGITSS--ED----GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-------SLGD---IWFTENG 81 (300)
T ss_dssp CCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-------TTSC---EEEEETT
T ss_pred CCcceeeEC--CC----CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-------CCCC---EEEEecC
Confidence 457899999 88 77777765 7899999987 55433 3221 22468899998 7773 4444445
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~ 175 (839)
++.|..++.. .. .. ...+......+.++++.+ ++.+.++...++.|..+|.. ++.......
T Consensus 82 ~~~v~~~d~~-g~-------------~~-~~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 82 ANKIGKLSKK-GG-------------FT-EYPLPQPDSGPYGITEGL---NGDIWFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp TTEEEEECTT-SC-------------EE-EEECSSTTCCEEEEEECS---TTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred CCeEEEECCC-CC-------------eE-EecCCCCCCCCccceECC---CCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence 7889888865 22 21 122233346689999998 88877777667899999987 554422111
Q ss_pred CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
........+.+ ++++.+.++...++.|..++.. .......+..+
T Consensus 143 ~~~~~~~~i~~---d~~g~l~v~~~~~~~i~~~~~~---------------------------------g~~~~~~~~~~ 186 (300)
T 2qc5_A 143 NKGSYPAFITL---GSDNALWFTENQNNSIGRITNT---------------------------------GKLEEYPLPTN 186 (300)
T ss_dssp STTCCEEEEEE---CTTSSEEEEETTTTEEEEECTT---------------------------------CCEEEEECSST
T ss_pred CCCCCceeEEE---CCCCCEEEEecCCCeEEEECCC---------------------------------CcEEEeeCCCC
Confidence 12223444444 4667766666567888888764 11111122234
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEE
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 333 (839)
...+.+++++++++..++....+.|.+|+. ++.. .. .....+...+.++++. +.+.++...++.|..|
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI------SE---YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE------EE---EECCCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 567899999999987777666778999998 3322 11 1222345567888887 4555555567899999
Q ss_pred cCCCceEEE-eecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 334 GSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 334 ~~~~~~~~~-~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.+++.... +..... .+.+++++++|.+.++.. . .|..++.
T Consensus 257 ~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 257 TNDNTIQEYQLQTENA-EPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CTTSCEEEEECCSTTC-CCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCcEEEEECCccCC-ccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 996544322 222233 478899999988665544 4 6666665
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.29 E-value=1.1e-09 Score=110.24 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=137.5
Q ss_pred cceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+++|++++ ++.|++||.++|+.+.++..+....++++.++ |+| .+++ +.++.|..||. +
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-------pdG----~ilv-s~~~~V~~~d~-~------- 64 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-------KAG----EILF-SYSKGAKMITR-D------- 64 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-------TTS----CEEE-ECBSEEEEECT-T-------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-------CCC----CEEE-eCCCCEEEECC-C-------
Confidence 57888877 89999999999999999987553358899999 888 5555 56788888887 3
Q ss_pred CCCccccceeeeEeccCC-CcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCCceEEEEecCCc--e---eEEEEee
Q 003208 114 YQPETCVNLSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPER--C---LLYSMKL 186 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h-~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~--~---~~~s~~~ 186 (839)
++.+..+..+ ...+.++.+.| +++++++.+. ++.|..+|. +++.+.++..... . ....+.
T Consensus 65 --------G~~~W~~~~~~~~~~~~~~~~~---dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~- 131 (276)
T 3no2_A 65 --------GRELWNIAAPAGCEMQTARILP---DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN- 131 (276)
T ss_dssp --------SCEEEEEECCTTCEEEEEEECT---TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-
T ss_pred --------CCEEEEEcCCCCccccccEECC---CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-
Confidence 4455555554 34788899999 9999998877 777888886 6777666542111 0 000111
Q ss_pred ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcC
Q 003208 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (839)
Q Consensus 187 ~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 266 (839)
..+++.++++...++.|..||.. ++.+..+..+ ..+.++...+
T Consensus 132 --~~~~G~~lv~~~~~~~v~~~d~~----------------------------------G~~~w~~~~~-~~~~~~~~~~ 174 (276)
T 3no2_A 132 --KNKKGNYLVPLFATSEVREIAPN----------------------------------GQLLNSVKLS-GTPFSSAFLD 174 (276)
T ss_dssp --ECTTSCEEEEETTTTEEEEECTT----------------------------------SCEEEEEECS-SCCCEEEECT
T ss_pred --ECCCCCEEEEecCCCEEEEECCC----------------------------------CCEEEEEECC-CCccceeEcC
Confidence 25789999999999999999975 3444445433 4566788889
Q ss_pred CCCEEEEEeCCCcEEEEEcccCcc
Q 003208 267 CGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 267 ~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
+++.+++++.++.|..+|..+++.
T Consensus 175 ~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 175 NGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp TSCEEEECBTTSEEEEECTTTCCE
T ss_pred CCCEEEEeCCCCeEEEEeCcCCcE
Confidence 999999998888999999987665
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.27 E-value=6.8e-10 Score=111.97 Aligned_cols=236 Identities=6% Similarity=-0.066 Sum_probs=153.8
Q ss_pred eEEeEEecccccccCCCccceeeEEE-E-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVA-L-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~ 144 (839)
.+.+|+++ ++| .+++ + ..++.|.+|+..... .......+...+.++++.+
T Consensus 25 ~p~~i~~~-------~~g----~l~v~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~p~~i~~~~-- 76 (270)
T 1rwi_B 25 SPSGVAVD-------SAG----NVYVTSEGMYGRVVKLATGSTG---------------TTVLPFNGLYQPQGLAVDG-- 76 (270)
T ss_dssp CEEEEEEC-------TTC----CEEEEECSSSCEEEEECC--------------------EECCCCSCCSCCCEEECT--
T ss_pred CccceEEC-------CCC----CEEEEccCCCCcEEEecCCCcc---------------cceEeeCCcCCcceeEECC--
Confidence 57889998 887 4444 4 457889999865321 1111123335678899998
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCC
Q 003208 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (839)
Q Consensus 145 ~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~ 224 (839)
++.++++.. ++.|.+||....... .+..........+.+ ++++.++++...++.|.+|+..
T Consensus 77 -~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------- 137 (270)
T 1rwi_B 77 -AGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAV---DTQGAVYVADRGNNRVVKLAAG------------- 137 (270)
T ss_dssp -TCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEE---CTTCCEEEEEGGGTEEEEECTT-------------
T ss_pred -CCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEE---CCCCCEEEEECCCCEEEEEECC-------------
Confidence 888666555 889999998765432 222121122345554 4677777777778899999644
Q ss_pred ccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
..............+.+++++++++.+++...++.|.+||...... .. ..
T Consensus 138 --------------------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~-----~~ 187 (270)
T 1rwi_B 138 --------------------SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----VV-----LP 187 (270)
T ss_dssp --------------------CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-----EE-----CC
T ss_pred --------------------CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-----Ee-----ec
Confidence 1111111122334678899999998777777788999999876543 11 11
Q ss_pred eccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 305 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..+...+..++++ +.++++...++.|.+|+..+.............+.+++++++|+++++...++.|+++++..
T Consensus 188 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 188 FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 2233567888987 45666666788999999965544433322212588999999999888888899999999854
No 192
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.26 E-value=1.4e-06 Score=102.30 Aligned_cols=500 Identities=10% Similarity=-0.012 Sum_probs=258.0
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCce---EEeEEecccccccCCCccceeeEEEEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR---LHGISCNFINCTEGSVSTRVTFEVALF 94 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (839)
..|.+|... ++ +.+-+.+. +-+..||..+++.. .+....... |.+|... ++| .+.++.
T Consensus 88 n~I~~i~~d--~~----g~lWigT~-~Gl~~yd~~~~~f~-~~~~~~~~~~~~i~~i~~d-------~~g----~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTD--SQ----GRVWIGTR-DGLSRYDEEKDIFQ-NFFYEKNGKHLQVNGIEEI-------SPE----QLLIST 148 (795)
T ss_dssp SCEEEEEEC--TT----SCEEEEES-SCEEEEETTTTEEE-EECCEETTEECCCCEEEEE-------ETT----EEEEEE
T ss_pred cceeEEEEC--CC----CCEEEEeC-CchheeCCCCCeEE-eccccccCCCceEEEEEEC-------CCC----CEEEEE
Confidence 458899887 66 55555444 45899998876532 232211111 7777776 665 444444
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC-Ccc-eEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-SHW-VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~ 172 (839)
. +.+..|+..... .......+ ... |.++...+ ++.+.+ ++.++-|..|+..+++....
T Consensus 149 ~-~gl~~~~~~~~~---------------~~~~~~~~~~~~~i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 208 (795)
T 4a2l_A 149 P-EGLIMFDIKESK---------------FIDDSFSTAMHKTIASTLYRQ---GDQIYI-GTSTDGLYTYSITQKTFEKV 208 (795)
T ss_dssp T-TEEEEEETTTTE---------------EECSSSCHHHHTCCEEEEEEE---TTEEEE-EESSSCEEEEETTTCCEEEC
T ss_pred C-CceEEEECCCCE---------------EEeccCCCCCCcceEEEEECC---CCCEEE-EECCCCEEEEeCCCCeEEEe
Confidence 4 557888765321 11111111 123 88888877 776554 66555688999877654322
Q ss_pred EecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 173 ~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
........+.++.. ..++. |..|+.++-|..|+.. ..+.....
T Consensus 209 ~~~~~~~~i~~i~~---d~~g~-lwigt~~~Gl~~~~~~---------------------------------~~~~~~~~ 251 (795)
T 4a2l_A 209 IPILGTKQIQAILQ---QSPTR-IWVATEGAGLFLINPK---------------------------------TKEIKNYL 251 (795)
T ss_dssp C----CCCEEEEEE---EETTE-EEEEEBSSCEEEEETT---------------------------------TTEEEEEC
T ss_pred cCCCCCCeeEEEEE---cCCCC-EEEEECCCCeEEEeCC---------------------------------CCeEEEee
Confidence 11111222344432 23444 4445555558888876 21111111
Q ss_pred e-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeece---EeeccccceEEeEEC-CCEE
Q 003208 253 V-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS---VLYGHNARVWDCCLT-DSFI 321 (839)
Q Consensus 253 ~-------~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~-~~~l 321 (839)
. -....|.++...++|.. ..|+.+ -|.+||..+... ..+... ...-....|.++... ...+
T Consensus 252 ~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 252 HSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSF------ASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp CCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEE------EEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred cCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeE------EEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 0 12357999999888864 445555 488898776543 111000 001123568888887 4567
Q ss_pred EEEeCCCeEEEEcCCCceEEEeecc------cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccC
Q 003208 322 ITAGEDCTCRVWGSDGKQLKMIKEH------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFN 395 (839)
Q Consensus 322 ~s~~~dg~i~vw~~~~~~~~~~~~h------~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 395 (839)
-.|+.++-|..|+........+... ....|.++..+++|. |..|+.++-|..|+........+..
T Consensus 324 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~-------- 394 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTL-------- 394 (795)
T ss_dssp EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECC--------
T ss_pred EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEec--------
Confidence 7788878899998733333333210 122589999888876 4557777788899875422211110
Q ss_pred CCcceEEeecCCCccceeeccCCCcceEEEEEecCCe-EEEEeccceEEEEEecCCCCceeEEEeee---cCCCceEEee
Q 003208 396 GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQV---SEGMPIICMD 471 (839)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~ 471 (839)
+.... . .......|.+++..+++. +.+++..+.++.++.... .+...... .....+.++.
T Consensus 395 ----------~~~~~--~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~---~~~~~~~~~~~l~~~~v~~i~ 458 (795)
T 4a2l_A 395 ----------QEDES--A-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG---QVENFNQRNSQLVNENVYAIL 458 (795)
T ss_dssp ----------C---------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC---CEEEECTTTSCCSCSCEEEEE
T ss_pred ----------CCCCc--c-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC---cEEEeecCCCCcCCCeeEEEE
Confidence 00000 0 000123589999988898 999998777876654322 22222110 1123455555
Q ss_pred ecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEee
Q 003208 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (839)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd 551 (839)
.... ..+.+|+. +.+..|+..+++........ .-.......+.. .+...++.+.+... +-+..|+
T Consensus 459 ~d~~---------g~lwigt~-~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~--i~~d~~g~lWigt~--~Gl~~~~ 523 (795)
T 4a2l_A 459 PDGE---------GNLWLGTL-SALVRFNPEQRSFTTIEKEK-DGTPVVSKQITT--LFRDSHKRLWIGGE--EGLSVFK 523 (795)
T ss_dssp ECSS---------SCEEEEES-SCEEEEETTTTEEEECCBCT-TCCBCCCCCEEE--EEECTTCCEEEEES--SCEEEEE
T ss_pred ECCC---------CCEEEEec-CceeEEeCCCCeEEEccccc-cccccCCceEEE--EEECCCCCEEEEeC--CceEEEe
Confidence 4332 33444544 45777776543221100000 000001122222 33556777766554 4477788
Q ss_pred ecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceee
Q 003208 552 LCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF 631 (839)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 631 (839)
..+... .. ........-....|.++...++|++.+... . -|..|+..... ...+...
T Consensus 524 ~~~~~~--~~--------~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~--------~~~~~~~--- 580 (795)
T 4a2l_A 524 QEGLDI--QK--------ASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ--------IKRYNTT--- 580 (795)
T ss_dssp EETTEE--EE--------CCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE--------EEEECGG---
T ss_pred CCCCeE--EE--------ecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc--------EEEeCCC---
Confidence 765421 00 000000011345688999888888665443 3 68888865421 1111110
Q ss_pred ecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEe
Q 003208 632 KGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (839)
Q Consensus 632 ~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~ 670 (839)
.+.. ...|.+|... .++...+++ ..| |..|+.+
T Consensus 581 ~gl~-~~~i~~i~~d---~~g~lWi~t-~~G-l~~~~~~ 613 (795)
T 4a2l_A 581 NGLP-NNVVYGILED---SFGRLWLST-NRG-ISCFNPE 613 (795)
T ss_dssp GTCS-CSCEEEEEEC---TTSCEEEEE-TTE-EEEEETT
T ss_pred CCCc-hhheEEEEEC---CCCCEEEEc-CCc-eEEEcCC
Confidence 0111 1457777665 566666665 344 4555544
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.24 E-value=1.5e-09 Score=111.16 Aligned_cols=198 Identities=11% Similarity=0.003 Sum_probs=132.1
Q ss_pred EeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCe
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
..+..+.....+++|+| +++ +++++..++.|..||..++ ...+..+.. ....+.+ ++++.++++...++.
T Consensus 21 ~~l~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~~l~~---~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-HQNGHCL---NKQGHLIACSHGLRR 91 (296)
T ss_dssp EEEECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-SEEEEEE---CTTCCEEEEETTTTE
T ss_pred EEEecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-CcceeeE---CCCCcEEEEecCCCe
Confidence 34445566788999999 888 7788888999999999877 444443322 2445554 578888877777789
Q ss_pred EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe---c-CCCCeEEEEEcCCCCEEEEEeC----
Q 003208 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---G-HEGSIFRIEWSSCGSKLVSVSD---- 276 (839)
Q Consensus 205 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~V~~l~~~~~~~~l~s~s~---- 276 (839)
|.+||.. +++...... + ....+..++++|+|+.+++.+.
T Consensus 92 i~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 92 LERQREP---------------------------------GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp EEEECST---------------------------------TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred EEEEcCC---------------------------------CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccc
Confidence 9999985 222111111 1 1235678999999998887321
Q ss_pred -------------CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC--CCce
Q 003208 277 -------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQ 339 (839)
Q Consensus 277 -------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~ 339 (839)
.+.|..++.. +.. . ....+......++|+ ++.+++.+.++.|.+|++ +++.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~------~-----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTL------S-----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCE------E-----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCE
T ss_pred cccccccccccCCCcEEEEECCC-CCE------E-----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcC
Confidence 2345555544 222 1 334555667889998 566777788899999998 3444
Q ss_pred ---EEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc
Q 003208 340 ---LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (839)
Q Consensus 340 ---~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~ 380 (839)
...+..+.. .+..++++++|+++++. ++.|.+|+.++.
T Consensus 207 ~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~ 247 (296)
T 3e5z_A 207 EYQGVHFTVEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPDGD 247 (296)
T ss_dssp EEEEEEECCSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTTSC
T ss_pred cCCCeEeeCCCC-CCCeEEECCCCCEEEEc--CCeEEEECCCCC
Confidence 233322333 46789999999876665 789999998653
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.24 E-value=3e-08 Score=101.43 Aligned_cols=274 Identities=9% Similarity=-0.032 Sum_probs=174.8
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
..+.+|++. ++|+ .+++...++.|.+|+.. .. ... ..+..+...+.++++.+
T Consensus 20 ~~p~~i~~d-------~~g~---l~v~~~~~~~v~~~~~~-~~-------------~~~-~~~~~~~~~~~~i~~~~--- 71 (300)
T 2qc5_A 20 SGPYGITSS-------EDGK---VWFTQHKANKISSLDQS-GR-------------IKE-FEVPTPDAKVMCLIVSS--- 71 (300)
T ss_dssp CCEEEEEEC-------TTSC---EEEEETTTTEEEEECTT-SC-------------EEE-EECSSTTCCEEEEEECT---
T ss_pred CCcceeeEC-------CCCC---EEEEcCCCCeEEEECCC-Cc-------------eEE-EECCCCCCcceeEEECC---
Confidence 358899998 7873 44444467899999876 22 222 12333446789999988
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecC-CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCC
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~ 224 (839)
++.+.++...++.|..+|.. ++.. .+..+ .......+.+ .+++.+.++...++.|..++..
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------- 133 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITE---GLNGDIWFTQLNGDRIGKLTAD------------- 133 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEE---CSTTCEEEEETTTTEEEEECTT-------------
T ss_pred CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceE---CCCCCEEEEccCCCeEEEECCC-------------
Confidence 88877776667889999987 5443 23221 2233445554 4677777776667888888765
Q ss_pred ccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
.......+......+.++++.++++..++...++.|..+|. ++.. .. ...
T Consensus 134 --------------------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~ 183 (300)
T 2qc5_A 134 --------------------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL------EE---YPL 183 (300)
T ss_dssp --------------------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EEC
T ss_pred --------------------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE------EE---eeC
Confidence 11111112234467899999999996666666788999998 3332 11 122
Q ss_pred eccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEE-eecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcC
Q 003208 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (839)
Q Consensus 305 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~-~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~ 381 (839)
..+...+..+++. +.+.++....+.|.+|+.+++.... +..... .+.+++++++|++.++...++.|..|+.++..
T Consensus 184 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 262 (300)
T 2qc5_A 184 PTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA-RPHAITAGKNSEIWFTEWGANQIGRITNDNTI 262 (300)
T ss_dssp SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEECTTSCE
T ss_pred CCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC-CceEEEECCCCCEEEeccCCCeEEEECCCCcE
Confidence 2344567888887 4566665567789999996654433 222233 58899999999877766667899999874321
Q ss_pred ccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEE
Q 003208 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (839)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~ 446 (839)
.....+. ....+.++++.+++.+++++.. .+..++
T Consensus 263 -------------------~~~~~~~----------~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 263 -------------------QEYQLQT----------ENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp -------------------EEEECCS----------TTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred -------------------EEEECCc----------cCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 0111110 1124678889999998888864 665543
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.21 E-value=3.9e-09 Score=122.57 Aligned_cols=241 Identities=8% Similarity=0.008 Sum_probs=154.9
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee--CC----eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS--GS----QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~--~~----~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
..+..++|| || +++|+.+. +| .|++||+.+|+.+...... ..+.+++|+ |||+ .++
T Consensus 125 ~~~~~~~~S--PD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~ws-------pDg~---~l~ 186 (710)
T 2xdw_A 125 VALRGYAFS--ED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWT-------HDGK---GMF 186 (710)
T ss_dssp EEEEEEEEC--TT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEEC-------TTSS---EEE
T ss_pred EEEEEEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEE-------eCCC---EEE
Confidence 468899999 99 77777654 23 8999999999876643222 136789999 9984 555
Q ss_pred EEEcCcE----------------EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC
Q 003208 92 ALFGEKR----------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 92 ~~~~~~~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
.+..++. |++|++.++.. ...++.....|...+..+.|+| ++++|+.++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-----------~~~~v~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~ 252 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-----------EDILCAEFPDEPKWMGGAELSD---DGRYVLLSIR 252 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-----------GCEEEECCTTCTTCEEEEEECT---TSCEEEEEEE
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcc-----------cceEEeccCCCCeEEEEEEEcC---CCCEEEEEEE
Confidence 5555443 88998865320 0124444455677789999999 9999887764
Q ss_pred -----CCcEEEEecCC------Cc-eEEEEecCCceeEEEEeeccCCccceEEEEeec----CCeEEEEEeeccccccCC
Q 003208 156 -----DNSIRVWDISN------SS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 156 -----d~~i~vwd~~~------~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~----dg~i~vw~~~~~~~~~~~ 219 (839)
+..|.+||+.+ +. ....+..+....... + ++++..|+..+. .+.|.+|++.
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---s~dg~~l~~~s~~~~~~~~l~~~d~~-------- 319 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY--V---TNEGTVFTFKTNRHSPNYRLINIDFT-------- 319 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE--E---EEETTEEEEEECTTCTTCEEEEEETT--------
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE--E---eccCCEEEEEECCCCCCCEEEEEeCC--------
Confidence 57899999976 43 344554443332222 1 356666655443 2368888876
Q ss_pred CCCCCccCCCCCCCceeeEeecccccce--eeEEEecCCC--CeEEEEEcCCCCEEEEEeCCCc--EEEEEcccCccCCC
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRS--ARIWEVRAEYWKDS 293 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~ 293 (839)
... ....+..|.. .+..+.|++++..+++...|+. |++|++.+++.
T Consensus 320 -------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~--- 371 (710)
T 2xdw_A 320 -------------------------DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL--- 371 (710)
T ss_dssp -------------------------SCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE---
T ss_pred -------------------------CCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE---
Confidence 221 2234445544 6888999988888888888885 45566644432
Q ss_pred CCceeeeceEeeccccceEEeEEC--CCEEE-EEe---CCCeEEEEcC-CCc
Q 003208 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAG---EDCTCRVWGS-DGK 338 (839)
Q Consensus 294 ~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~-s~~---~dg~i~vw~~-~~~ 338 (839)
.+ .+..+...+..+.++ +..++ +.+ ..+++.+||+ +++
T Consensus 372 --~~-----~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 --LK-----IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp --EE-----EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred --EE-----ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22 344456678888886 33443 333 3478999998 444
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.20 E-value=8.8e-09 Score=119.53 Aligned_cols=243 Identities=8% Similarity=0.019 Sum_probs=155.5
Q ss_pred eEEeEEecccccccCCCccceeeEEEEE-c-Cc----EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALF-G-EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~-~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (839)
.+.+++|| |||+ .|+.. . +| .|++||+..+. .......+ ..+..++|
T Consensus 126 ~~~~~~~S-------PDg~----~la~~~~~~G~~~~~i~v~d~~tg~---------------~~~~~~~~-~~~~~~~w 178 (710)
T 2xdw_A 126 ALRGYAFS-------EDGE----YFAYGLSASGSDWVTIKFMKVDGAK---------------ELPDVLER-VKFSCMAW 178 (710)
T ss_dssp EEEEEEEC-------TTSS----EEEEEEEETTCSCEEEEEEETTTTE---------------EEEEEEEE-ECSCCEEE
T ss_pred EEEEEEEC-------CCCC----EEEEEEcCCCCceEEEEEEECCCCC---------------CCcccccC-cccceEEE
Confidence 57889999 9984 44432 2 22 89999997633 22211111 12677999
Q ss_pred eeccCCCcEEEEEeCCCc----------------EEEEecCCCceE--EEEecCC-ceeEEEEeeccCCccceEEEEeec
Q 003208 141 LKVCNGNRSLAIGCSDNS----------------IRVWDISNSSII--LEVHSPE-RCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~----------------i~vwd~~~~~~~--~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
+| +++.|+.++.++. |++|++.+++.. ....... .....++.+ ++++.+|+..+.
T Consensus 179 sp---Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~---SpDg~~l~~~~~ 252 (710)
T 2xdw_A 179 TH---DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL---SDDGRYVLLSIR 252 (710)
T ss_dssp CT---TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE---CTTSCEEEEEEE
T ss_pred Ee---CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE---cCCCCEEEEEEE
Confidence 99 9999998887765 999999887632 2223221 222344444 789998887664
Q ss_pred -----CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce-eeEEEecCCCCeEEEEEcCCCCEEEEEe
Q 003208 202 -----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 202 -----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s 275 (839)
+..|++||+....... .+. ....+..+...+.. .|+|+|+.|+..+
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 304 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGI---------------------------TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKT 304 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSS---------------------------CSSCCCEEEECSSSSCEE-EEEEETTEEEEEE
T ss_pred ccCCCccEEEEEECccccccc---------------------------CCccceEEeeCCCCcEEE-EEeccCCEEEEEE
Confidence 5689999987100000 021 34456666666655 4888998887766
Q ss_pred CC----CcEEEEEcccCccCCCCCceeeeceEeecccc--ceEEeEEC-C-CEEEEEeCCCe--EEEEcC-CCceEEEee
Q 003208 276 DD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT-D-SFIITAGEDCT--CRVWGS-DGKQLKMIK 344 (839)
Q Consensus 276 ~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~-~-~~l~s~~~dg~--i~vw~~-~~~~~~~~~ 344 (839)
.+ ..|.+||+.+.... ..+ .+..|.. .+..+.|+ + .++++...|+. |.+|++ +++.+..+.
T Consensus 305 ~~~~~~~~l~~~d~~~~~~~---~~~-----~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 305 NRHSPNYRLINIDFTDPEES---KWK-----VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp CTTCTTCEEEEEETTSCCGG---GCE-----EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CCCCCCCEEEEEeCCCCCcc---cce-----eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 53 35999998775310 011 3344433 57778887 4 46677777874 566777 788778887
Q ss_pred cccCCceEEEEEccCCCEEEEE-e---CCCcEEEEecCC
Q 003208 345 EHIGRGIWRCLYDSLSSLLVTA-G---FDSAIKVHQFQA 379 (839)
Q Consensus 345 ~h~~~~i~~~~~~~~~~~l~t~-~---~dg~i~iw~~~~ 379 (839)
.+.+ .+..+.++|++..++.. + ..+.|..||+.+
T Consensus 377 ~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 377 LEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp CCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 7765 58889999988755533 3 247899999854
No 197
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.19 E-value=4.4e-06 Score=98.09 Aligned_cols=448 Identities=9% Similarity=0.009 Sum_probs=243.6
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCce-EEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR-LHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
|.++... ++ +.+.++.. ..|.+||.++++............ |.+|... +++ .+.+...++-
T Consensus 133 i~~i~~d--~~----g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d-------~~g----~lwigt~~~G 194 (795)
T 4a2l_A 133 VNGIEEI--SP----EQLLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYR-------QGD----QIYIGTSTDG 194 (795)
T ss_dssp CCEEEEE--ET----TEEEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEE-------ETT----EEEEEESSSC
T ss_pred EEEEEEC--CC----CCEEEEEC-CceEEEECCCCEEEeccCCCCCCcceEEEEEC-------CCC----CEEEEECCCC
Confidence 8888877 66 55555444 568999987765322111111112 7777776 565 4555554445
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC--
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-- 176 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~-- 176 (839)
|..|+..... .+... ...+...|.++...+ ++.+.+ |+.++-+.+||..+++........
T Consensus 195 l~~~~~~~~~-------------~~~~~-~~~~~~~i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~ 256 (795)
T 4a2l_A 195 LYTYSITQKT-------------FEKVI-PILGTKQIQAILQQS---PTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSN 256 (795)
T ss_dssp EEEEETTTCC-------------EEECC-----CCCEEEEEEEE---TTEEEE-EEBSSCEEEEETTTTEEEEECCCTTC
T ss_pred EEEEeCCCCe-------------EEEec-CCCCCCeeEEEEEcC---CCCEEE-EECCCCeEEEeCCCCeEEEeecCCCC
Confidence 7778765422 11111 112345788888877 776554 554445889998776543322211
Q ss_pred ----CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 177 ----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 177 ----~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
....++++.. +.++.+. .|+.. -|.+|+.. ..... .+
T Consensus 257 ~~~l~~~~i~~i~~---d~~g~lW-igt~~-Gl~~~~~~---------------------------------~~~~~-~~ 297 (795)
T 4a2l_A 257 PKSISSNYIRSLAM---DSQNRLW-IGTFN-DLNIYHEG---------------------------------TDSFA-SY 297 (795)
T ss_dssp TTSCSCSBEEEEEE---CTTSCEE-EEESS-CEEEEETT---------------------------------TTEEE-EE
T ss_pred ccccCCCeEEEEEE---cCCCCEE-EEeCC-hhheEcCC---------------------------------CCeEE-EE
Confidence 1233555544 3455443 44444 58888865 11111 11
Q ss_pred e--------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceE--eeccccceEEeEEC-CCEE
Q 003208 253 V--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV--LYGHNARVWDCCLT-DSFI 321 (839)
Q Consensus 253 ~--------~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~-~~~l 321 (839)
. -....|.++...++|. |..|+.++-|..|+...... +...... ..-....|.++... ...|
T Consensus 298 ~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 298 SSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------KNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp CCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------EEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred ecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------eEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 1 1236799999998876 66677777788998765433 1110000 00123458888887 4567
Q ss_pred EEEeCCCeEEEEcCCCceEEEeecc--------cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccc
Q 003208 322 ITAGEDCTCRVWGSDGKQLKMIKEH--------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE 393 (839)
Q Consensus 322 ~s~~~dg~i~vw~~~~~~~~~~~~h--------~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 393 (839)
-.|+.++-|..|+........+... ....|.+++..+++..|..|+.++-|..++.+......+..
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~------ 444 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ------ 444 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT------
T ss_pred EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec------
Confidence 7788887899999843333333211 11258999998888856778887789999975432211110
Q ss_pred cCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeee-----cCCCceE
Q 003208 394 FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV-----SEGMPII 468 (839)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-----~~~~~v~ 468 (839)
... ......|.++...+++.+.+++.. .++.++. ....+...... .....+.
T Consensus 445 ------------~~~-------~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~---~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 445 ------------RNS-------QLVNENVYAILPDGEGNLWLGTLS-ALVRFNP---EQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp ------------TTS-------CCSCSCEEEEEECSSSCEEEEESS-CEEEEET---TTTEEEECCBCTTCCBCCCCCEE
T ss_pred ------------CCC-------CcCCCeeEEEEECCCCCEEEEecC-ceeEEeC---CCCeEEEccccccccccCCceEE
Confidence 000 011235889998889999999884 4655543 23334333211 1123455
Q ss_pred EeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEE
Q 003208 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (839)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 548 (839)
++..... ..+.+|+. +.|..|+..++.. ...............+.. .+...+|.+.+... . -+.
T Consensus 502 ~i~~d~~---------g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~--i~~d~~g~lWigT~-~-Gl~ 565 (795)
T 4a2l_A 502 TLFRDSH---------KRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNC--IYEASNGIIWVGTR-E-GFY 565 (795)
T ss_dssp EEEECTT---------CCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEE--EEECTTSCEEEEES-S-CEE
T ss_pred EEEECCC---------CCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEE--EEECCCCCEEEEeC-C-Cce
Confidence 5544333 33444554 5588888765432 100000000011122323 33556777766544 3 477
Q ss_pred EeeecCCCCcccccCCccceeeeeecccc--c-cCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSS--C-FGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 549 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
.||..+... ..+.. + ....|.++...++|++.+++ . +-|..|+...
T Consensus 566 ~~d~~~~~~---------------~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~ 614 (795)
T 4a2l_A 566 CFNEKDKQI---------------KRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPET 614 (795)
T ss_dssp EEETTTTEE---------------EEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTT
T ss_pred eECCCCCcE---------------EEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCC
Confidence 787654321 01111 1 13458888888888877665 3 4577777654
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.19 E-value=1.4e-08 Score=105.03 Aligned_cols=273 Identities=10% Similarity=0.012 Sum_probs=173.0
Q ss_pred EEEEecCCCCCCCcceEEEee------CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-
Q 003208 22 ALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF- 94 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~------~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~- 94 (839)
..... |+ ++.+++.. ++.|.++|..+++.+.++..... .+ ++++ |||+ .++++.
T Consensus 37 ~~~~~--pd----~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~--P~-va~s-------pDG~---~lyVan~ 97 (386)
T 3sjl_D 37 LEAPA--PD----ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PN-PVVA-------DDGS---FIAHAST 97 (386)
T ss_dssp CCCCC--CC----TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CE-EEEC-------TTSS---CEEEEEE
T ss_pred eeccC--CC----CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC--Cc-EEEC-------CCCC---EEEEEcc
Confidence 34455 77 55555543 46999999999999999987544 35 9999 9985 444443
Q ss_pred ---------cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC-------CcceEEEEEeeccCCCcEEEEEeC--C
Q 003208 95 ---------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--D 156 (839)
Q Consensus 95 ---------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~las~~~--d 156 (839)
.++.|.+||..+ ++.+..+.-- ...-..++|+| ++++|+++.. +
T Consensus 98 ~~~r~~~G~~~~~VsviD~~t---------------~~v~~~I~v~~g~r~~~g~~P~~~a~sp---DGk~lyVan~~~~ 159 (386)
T 3sjl_D 98 VFSRIARGERTDYVEVFDPVT---------------LLPTADIELPDAPRFLVGTYPWMTSLTP---DGKTLLFYQFSPA 159 (386)
T ss_dssp EEEETTEEEEEEEEEEECTTT---------------CCEEEEEEETTCCCCCBSCCGGGEEECT---TSSEEEEEECSSS
T ss_pred cccccccCCCCCEEEEEECCC---------------CeEEEEEECCCccccccCCCCceEEEcC---CCCEEEEEEcCCC
Confidence 257899999876 3344433211 12345689999 9998887763 6
Q ss_pred CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCcee
Q 003208 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (839)
Q Consensus 157 ~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (839)
+.|.++|+.+++.+.++..+....++ +.....+++.+.||.+.+.++...
T Consensus 160 ~~VsVID~~t~~vv~tI~v~g~~~~~-------P~g~~~~~~~~~DG~~~~v~~~~~----------------------- 209 (386)
T 3sjl_D 160 PAVGVVDLEGKAFKRMLDVPDCYHIF-------PTAPDTFFMHCRDGSLAKVAFGTE----------------------- 209 (386)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEE-------EEETTEEEEEETTSCEEEEECCSS-----------------------
T ss_pred CeEEEEECCCCcEEEEEECCCcceee-------cCCCceeEEECCCCCEEEEECCCC-----------------------
Confidence 89999999999999998755422222 233456667888999999988620
Q ss_pred eEeecccccceeeEEEe----cCCCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee-----
Q 003208 237 FKLQDQQHTAVNLFRLV----GHEGSIF-RIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY----- 305 (839)
Q Consensus 237 ~~~~~~~~~~~~~~~~~----~h~~~V~-~l~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----- 305 (839)
++...... .-...++ ...|. ++|++++ .+.++.|.+.|+.+... +...+..+.
T Consensus 210 ---------g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~------~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 210 ---------GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA------KFLPAVEALTEAER 273 (386)
T ss_dssp ---------SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC------EECCCEESSCHHHH
T ss_pred ---------CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc------eeecceeccccccc
Confidence 11111000 0112222 13554 6775544 56689999999976542 111111100
Q ss_pred --c-cccceEEeEEC--CCEEEEEeC----------CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEE-e
Q 003208 306 --G-HNARVWDCCLT--DSFIITAGE----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-G 367 (839)
Q Consensus 306 --~-h~~~v~~~~~~--~~~l~s~~~----------dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~-~ 367 (839)
+ .......++++ ++.++.... .+.|.+.|+ +++.+.++.... .++++++++|++ +|++. .
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEET
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcC
Confidence 0 11122234455 455555432 257999999 788888876544 488999999996 66665 4
Q ss_pred CCCcEEEEecCC
Q 003208 368 FDSAIKVHQFQA 379 (839)
Q Consensus 368 ~dg~i~iw~~~~ 379 (839)
.++.|.++|...
T Consensus 352 ~~~~VsViD~~t 363 (386)
T 3sjl_D 352 GDKTLYIHDAES 363 (386)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 589999999854
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.18 E-value=1.7e-09 Score=125.06 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=129.5
Q ss_pred CCCcceEEEEEeeccCCCcEEEE-----EeCCCcEEEEecCCCceE-EEEecCCceeEEEEeeccCCccceEEEEeecCC
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAI-----GCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las-----~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
+|...+.+++|+| ++++||. |+.+..|++||+.+++.+ ........ ..++.+ ++++..|+.++.+.
T Consensus 118 ~~~~~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~--~~~~~w---spDg~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK--YATPKW---TPDSKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT--TCCCEE---CTTSSEEEEEECCC
T ss_pred CCCEEEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc--ccceEE---ecCCCEEEEEEecC
Confidence 5666799999999 9999983 444578999999998764 21111111 022333 68999999888766
Q ss_pred e-------------EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 204 E-------------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 204 ~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
. |++|++.++.. ....+.....|...+.++.|+|||++
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~-----------------------------~~~lv~~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPS-----------------------------KDTVVHERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGG-----------------------------GCEEEECCCCCTTCEEEEEECTTSCC
T ss_pred CCCCccccCCCCCEEEEEECCCCch-----------------------------hceEEEecCCCCEEEEEEEECCCCCE
Confidence 5 89998862110 11233333456678999999999999
Q ss_pred EEEEeCCC----cEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEe---CCCeEEEEcC-CCce--
Q 003208 271 LVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG---EDCTCRVWGS-DGKQ-- 339 (839)
Q Consensus 271 l~s~s~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~---~dg~i~vw~~-~~~~-- 339 (839)
|+..+.++ .|++|+..++.. + .+..+...+....+. +.+++... .++.|.+|++ ++..
T Consensus 241 l~~~~~~~~~~~~l~~~~~~~~~~------~-----~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 241 LFVYILRGWSENDVYWKRPGEKDF------R-----LLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EEEEEEETTTEEEEEEECTTCSSC------E-----EEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EEEEEeCCCCceEEEEEcCCCCce------E-----EeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccC
Confidence 98887666 666776544332 2 344444445555555 45444433 2588999999 4432
Q ss_pred EEEeeccc-CCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 340 LKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 340 ~~~~~~h~-~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
...+..+. ...+..++++ ++.++++...|+..++|.++
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 23333332 3357788887 67788999999999988763
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.16 E-value=1.1e-07 Score=99.91 Aligned_cols=260 Identities=7% Similarity=-0.111 Sum_probs=160.2
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE----------cCcEEEEEEeeccCCCCCCC
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~----------~~~~i~iw~~~~~~~~~~~~ 114 (839)
.|.+||..+++.+.++.... .. +++++ |||+ .+.++. .++.|.+||..+
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~--~p-~i~~s-------pDg~---~lyv~n~~~~~~~rg~~~~~v~viD~~t-------- 106 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF--LP-NPVAA-------HSGS---EFALASTSFSRIAKGKRTDYVEVFDPVT-------- 106 (373)
T ss_pred EEEEEECCCCeEEEEecCCC--CC-CeEEC-------CCCC---EEEEEeccccccccCCCCCeEEEEECCC--------
Confidence 88999999999988887533 23 89999 9985 444442 257899999875
Q ss_pred CCccccceeeeEeccCC-------CcceEEEEEeeccCCCcEEEEEeC--CCcEEEEecCCCceEEE-EecCCceeEEEE
Q 003208 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE-VHSPERCLLYSM 184 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~las~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~s~ 184 (839)
++.+..+..- ...-..++++| ++++|+++.. ++.|.++| .+++.+.. +..+.. ....
T Consensus 107 -------~~~~~~i~~~~~~~~~~g~~p~~~~~sp---DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~~~- 173 (373)
T 2mad_H 107 -------FLPIADIELPDAPRFDVGPYSWMNANTP---NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YHIH- 173 (373)
T ss_pred -------CcEEEEEECCCccccccCCCccceEECC---CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EEEE-
Confidence 2233322110 12345789999 9999988764 57899999 99988877 654432 1111
Q ss_pred eeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEE
Q 003208 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (839)
Q Consensus 185 ~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 264 (839)
......+++.+.||.+.+++. .++..... ..... +.+...-.....+
T Consensus 174 -----~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~-------------------------~~~~~--~~~~~p~~~~~~~ 220 (373)
T 2mad_H 174 -----PGAPSTFYLLCAQGGLAKTDH-AGGAAGAG-------------------------LVGAM--LTAAQNLLTQPAQ 220 (373)
T ss_pred -----eCCCceEEEEcCCCCEEEEEC-CCcEEEEE-------------------------ecccc--ccCCcceeeccee
Confidence 122345566778899999987 33211000 00000 0111111223456
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeec--------cccceEEeEEC--CCEEEEEeC--------
Q 003208 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITAGE-------- 326 (839)
Q Consensus 265 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~--~~~l~s~~~-------- 326 (839)
.+++..++..+..+.+.+.|+..... +.+....... .......+.++ ++.++.+..
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGA------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcc------eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 66665555555778899999875432 1111001000 11223335666 455555432
Q ss_pred --CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEEe-CCCcEEEEecCC
Q 003208 327 --DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (839)
Q Consensus 327 --dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~-~dg~i~iw~~~~ 379 (839)
.+.|.++|. +++.+.++.... ..++++|+|||+ .++++. .++.|.++|+.+
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 357999999 677778885433 378999999999 788777 589999999954
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.14 E-value=6.5e-09 Score=104.72 Aligned_cols=234 Identities=6% Similarity=-0.049 Sum_probs=150.5
Q ss_pred eeeEEEEecCCCCCCCcceEE-Eee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 19 EISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 19 ~Vt~l~f~~~~~~~~~~~~l~-~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
...+++++ ++ +++.+ +.. ++.|.+||..++... .+.......+.+|+++ ++| .++++..+
T Consensus 25 ~p~~i~~~--~~----g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~-------~~g----~l~v~~~~ 86 (270)
T 1rwi_B 25 SPSGVAVD--SA----GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVD-------GAG----TVYVTDFN 86 (270)
T ss_dssp CEEEEEEC--TT----CCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEEC-------TTC----CEEEEETT
T ss_pred CccceEEC--CC----CCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEEC-------CCC----CEEEEcCC
Confidence 56789999 88 67666 533 789999997655432 2222222357889998 877 44444448
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEecc-CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~ 175 (839)
+.|.+|+..... ...+. .....+.++++.| ++.++++...++.|.+|+..+.........
T Consensus 87 ~~i~~~d~~~~~----------------~~~~~~~~~~~p~~i~~~~---~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 147 (270)
T 1rwi_B 87 NRVVTLAAGSNN----------------QTVLPFDGLNYPEGLAVDT---QGAVYVADRGNNRVVKLAAGSKTQTVLPFT 147 (270)
T ss_dssp TEEEEECTTCSC----------------CEECCCCSCSSEEEEEECT---TCCEEEEEGGGTEEEEECTTCCSCEECCCC
T ss_pred CEEEEEeCCCce----------------EeeeecCCcCCCcceEECC---CCCEEEEECCCCEEEEEECCCceeEeeccc
Confidence 889999875321 11121 2235689999998 888777777788999998765543322111
Q ss_pred CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (839)
.. .....+.+ ++++.++++...++.|.+|+.. ..........+
T Consensus 148 ~~-~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~---------------------------------~~~~~~~~~~~ 190 (270)
T 1rwi_B 148 GL-NDPDGVAV---DNSGNVYVTDTDNNRVVKLEAE---------------------------------SNNQVVLPFTD 190 (270)
T ss_dssp SC-CSCCCEEE---CTTCCEEEEEGGGTEEEEECTT---------------------------------TCCEEECCCSS
T ss_pred cC-CCceeEEE---eCCCCEEEEECCCCEEEEEecC---------------------------------CCceEeecccC
Confidence 11 11223333 4677777777778899999976 22221112233
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEE
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 333 (839)
...+.+|+++++|..+++...++.|.+|+...... . .....+...+.+++++ ++++++...++.|+++
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~------~----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------T----VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC------E----ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc------e----eeccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 36789999999997777777788999999876433 1 0112233568889997 5778888889999999
Q ss_pred cCC
Q 003208 334 GSD 336 (839)
Q Consensus 334 ~~~ 336 (839)
++.
T Consensus 261 ~~~ 263 (270)
T 1rwi_B 261 TSL 263 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 983
No 202
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.12 E-value=6.9e-08 Score=102.53 Aligned_cols=261 Identities=8% Similarity=0.004 Sum_probs=156.6
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeec--------CceEE-eEEecccccccCCCccceeeEEEEEcCcEEEEEEee
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFH--------GIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~--------~~~v~-~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~ 105 (839)
+.++++..++.|..+|.++|+.+.+..... ...+. .+... ++ .+++...++.|..+|..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~v~v~~~~g~l~a~d~~ 121 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--------GG----HVYIGSEKAQVYALNTS 121 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--------TT----EEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--------CC----EEEEEcCCCEEEEEECC
Confidence 344444448899999999999988776532 11222 22222 33 67777788999999987
Q ss_pred ccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeE----
Q 003208 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL---- 181 (839)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---- 181 (839)
++. .+..............+ .+..++.++.++.|..+|..+++.+...........
T Consensus 122 tG~---------------~~W~~~~~~~~~~~p~~-----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 122 DGT---------------VAWQTKVAGEALSRPVV-----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp TCC---------------EEEEEECSSCCCSCCEE-----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CCC---------------EEEEEeCCCceEcCCEE-----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 633 22222222111111122 234677788899999999999998877654322110
Q ss_pred EEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCC-----
Q 003208 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE----- 256 (839)
Q Consensus 182 ~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 256 (839)
.+.. ..+..++.++.++.|..+|..+ ++.+-......
T Consensus 182 ~~~~-----~~~~~v~~g~~~g~l~~~d~~t---------------------------------G~~~w~~~~~~~~~~~ 223 (376)
T 3q7m_A 182 SAPT-----TAFGAAVVGGDNGRVSAVLMEQ---------------------------------GQMIWQQRISQATGST 223 (376)
T ss_dssp CCCE-----EETTEEEECCTTTEEEEEETTT---------------------------------CCEEEEEECCC-----
T ss_pred CCcE-----EECCEEEEEcCCCEEEEEECCC---------------------------------CcEEEEEecccCCCCc
Confidence 0111 1234677788899999999872 22222221100
Q ss_pred --CCeEEEEEcC--CCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEE
Q 003208 257 --GSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (839)
Q Consensus 257 --~~V~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~v 332 (839)
..+..+...| .+..++.++.++.+..+|..+++. .- .. .......+...+..++.++.++.+..
T Consensus 224 ~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~w-----~~--~~~~~~~~~~~~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 224 EIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----MW-----KR--ELGSVNDFIVDGNRIYLVDQNDRVMA 291 (376)
T ss_dssp ------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----EE-----EE--CCCCEEEEEEETTEEEEEETTCCEEE
T ss_pred ccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----Ee-----ec--cCCCCCCceEECCEEEEEcCCCeEEE
Confidence 0000011111 246788888899999999988765 11 11 11234445556888999999999999
Q ss_pred EcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 333 w~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|. +++.+..........+..... .+..|+.++.+|.+.++|.+.
T Consensus 292 ~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 999 788777665222212223333 246788899999999999854
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=2e-08 Score=105.98 Aligned_cols=257 Identities=9% Similarity=-0.014 Sum_probs=167.5
Q ss_pred CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE----------cCcEEEEEEeeccCCCCCC
Q 003208 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 44 ~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~----------~~~~i~iw~~~~~~~~~~~ 113 (839)
+.|.++|..+++.+.++..... + +|+++ |||+ .++++. .++.|.++|..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~S-------pDgk---~lyVan~~~~~~~~G~~~~~VsviD~~t------- 158 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAA-------EDGS---FFAQASTVFERIARGKRTDYVEVFDPVT------- 158 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEEC-------TTSS---CEEEEEEEEEETTEEEEEEEEEEECTTT-------
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEEC-------CCCC---EEEEEeccccccccCCCCCEEEEEECCC-------
Confidence 6999999999999999997543 3 89999 9986 444443 357899999876
Q ss_pred CCCccccceeeeEeccC-------CCcceEEEEEeeccCCCcEEEEEeC--CCcEEEEecCCCceEEEEecCCceeEEEE
Q 003208 114 YQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-------h~~~I~~~~~~~~~~~~~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~s~ 184 (839)
++.+..+.- .......++|+| ++++|+++.. ++.|.+.|+.+++.+.++..+....++.
T Consensus 159 --------~~vv~~I~v~g~~r~~~g~~P~~~~~sp---DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p- 226 (426)
T 3c75_H 159 --------FLPIADIELPDAPRFLVGTYQWMNALTP---DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFP- 226 (426)
T ss_dssp --------CCEEEEEEETTCCCCCBSCCGGGSEECT---TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE-
T ss_pred --------CcEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeecc-
Confidence 333433321 012345689999 9999988764 5889999999999998887544211111
Q ss_pred eeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE----EEecCCCCe-
Q 003208 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF----RLVGHEGSI- 259 (839)
Q Consensus 185 ~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~V- 259 (839)
.....+++.+.||.+.+.+... .+... .+.....++
T Consensus 227 ------~g~~~~v~~~~dG~~~~V~~~~---------------------------------~~v~~~~~~~~~v~~~p~~ 267 (426)
T 3c75_H 227 ------ASPTVFYMNCRDGSLARVDFAD---------------------------------GETKVTNTEVFHTEDELLI 267 (426)
T ss_dssp ------EETTEEEEEETTSSEEEEECCT---------------------------------TCCEEEECCCCSCTTSCBC
T ss_pred ------CCCcEEEEEcCCCCEEEEECCC---------------------------------CcEEEEeeeeeccCCCcee
Confidence 1224556667788888887751 11111 011111111
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee-----c---cccceEEeEEC--CCEEEEEeC---
Q 003208 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----G---HNARVWDCCLT--DSFIITAGE--- 326 (839)
Q Consensus 260 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~---h~~~v~~~~~~--~~~l~s~~~--- 326 (839)
..+.+.+++..++..+..+.+.+.|...... ..+...... . .......++++ ++.++....
T Consensus 268 ~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~------~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 268 NHPAFSLRSGRLVWPTYTGKIFQADLTAEGA------TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp SCCEECTTTCEEEEEBTTSEEEEEEECSSCE------EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred eEeeecCCCCEEEEEeCCCcEEEEeccCCce------EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 2356788888887778889999999865432 111100100 0 00111124565 455555432
Q ss_pred -------CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEEe-CCCcEEEEecCC
Q 003208 327 -------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (839)
Q Consensus 327 -------dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~-~dg~i~iw~~~~ 379 (839)
++.|.+.|. +.+.+.++.... ..+.++|+||++ ++++.. .++.|.++|+..
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 457999999 788888886544 378999999998 888888 599999999954
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.08 E-value=5e-09 Score=121.22 Aligned_cols=247 Identities=5% Similarity=-0.105 Sum_probs=150.5
Q ss_pred eeeeEEEEecCCCCCCCcceEEEe-----e-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAG-----S-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g-----~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
..+.+++|| || +++|+-+ + +..|++||+.+|+.+.... ........++|+ |||+ .++
T Consensus 121 ~~~~~~~~S--PD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~ws-------pDg~---~l~ 183 (695)
T 2bkl_A 121 VSLGTWAVS--WD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWT-------PDSK---GFY 183 (695)
T ss_dssp EEEEEEEEC--TT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEEC-------TTSS---EEE
T ss_pred EEEEEEEEC--CC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEe-------cCCC---EEE
Confidence 468899999 99 7777732 2 2589999999998651111 111112678899 9984 555
Q ss_pred EEEcCcE-------------EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCC-
Q 003208 92 ALFGEKR-------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN- 157 (839)
Q Consensus 92 ~~~~~~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~- 157 (839)
.++.+.. |++|++.++.. ...++.....|...+.++.|+| ++++|+.++.++
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-----------~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~ 249 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-----------KDTVVHERTGDPTTFLQSDLSR---DGKYLFVYILRGW 249 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGG-----------GCEEEECCCCCTTCEEEEEECT---TSCCEEEEEEETT
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCch-----------hceEEEecCCCCEEEEEEEECC---CCCEEEEEEeCCC
Confidence 5555544 99999875430 0235555666777899999999 999888877665
Q ss_pred ---cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee---cCCeEEEEEeeccccccCCCCCCCccCCCCC
Q 003208 158 ---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT---IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (839)
Q Consensus 158 ---~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 231 (839)
.|.+|+..+++. ..+..+.......+ + +++.+++... .++.|.+|++.
T Consensus 250 ~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~-~----~~g~l~~~s~~~~~~~~l~~~d~~-------------------- 303 (695)
T 2bkl_A 250 SENDVYWKRPGEKDF-RLLVKGVGAKYEVH-A----WKDRFYVLTDEGAPRQRVFEVDPA-------------------- 303 (695)
T ss_dssp TEEEEEEECTTCSSC-EEEEECSSCCEEEE-E----ETTEEEEEECTTCTTCEEEEEBTT--------------------
T ss_pred CceEEEEEcCCCCce-EEeecCCCceEEEE-e----cCCcEEEEECCCCCCCEEEEEeCC--------------------
Confidence 677777655543 33333332222222 2 3444444443 35788889876
Q ss_pred CCceeeEeeccccccee--eEEEecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc-CccCCCCCceeeeceEeec
Q 003208 232 SDFKCFKLQDQQHTAVN--LFRLVGH--EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYG 306 (839)
Q Consensus 232 ~~~~~~~~~~~~~~~~~--~~~~~~h--~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 306 (839)
.... ...+..| ...|..++|+ ++..+++...|+..++|.+.. +.. .+ .+..
T Consensus 304 -------------~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-----~~-----~l~~ 359 (695)
T 2bkl_A 304 -------------KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP-----VR-----TVQL 359 (695)
T ss_dssp -------------BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE-----EE-----ECCC
T ss_pred -------------CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe-----eE-----EecC
Confidence 2211 1233333 4567888888 677888999999988887652 221 11 2323
Q ss_pred c-ccceEEeEEC--CCEEE-EE---eCCCeEEEEcCCCceEEEeec
Q 003208 307 H-NARVWDCCLT--DSFII-TA---GEDCTCRVWGSDGKQLKMIKE 345 (839)
Q Consensus 307 h-~~~v~~~~~~--~~~l~-s~---~~dg~i~vw~~~~~~~~~~~~ 345 (839)
+ ...+..+.++ +..++ +. ...++|++||+.......+..
T Consensus 360 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 360 PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence 3 4556667676 34444 33 234789999994333444443
No 205
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=0.0001 Score=86.32 Aligned_cols=469 Identities=11% Similarity=0.036 Sum_probs=239.6
Q ss_pred eeeeEEEEecCCCCCCCcc-eEEEeeCCeeEEEECCCCeeeeEEee-------ecCceEEeEEecccccccCC--Cccce
Q 003208 18 GEISALCFVHLPSHLSSLP-FLLAGSGSQVLLYDLEAGTLIRPFQV-------FHGIRLHGISCNFINCTEGS--VSTRV 87 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~-~l~~g~~~~v~iwd~~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~~~--~~~~~ 87 (839)
..|.+|... ++ +. +-+...++-|..||..+++... +.. .....|.+|... . +|
T Consensus 66 n~I~~i~~d--~~----g~~lWigt~~~Gl~~~d~~~~~f~~-~~~~~~~~~~l~~~~i~~i~~d-------~~~~g--- 128 (781)
T 3v9f_A 66 NELNEVYTD--PV----QPVIWIATQRAGLNAYNYETQSFSV-YQYNPEDPQSLITNDVTHITSS-------VQAGK--- 128 (781)
T ss_dssp SCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTTEEEE-ECCCTTCSSSCSCSCEEEEEEC-------SSTTS---
T ss_pred cccceEEEc--CC----CCEEEEEeCCCCcceECCCCCeEEe-eccccCCCCCcccCcceEEEec-------CccCC---
Confidence 358888877 65 66 4444445479999988766432 210 112247777776 5 55
Q ss_pred eeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec--c-CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEec
Q 003208 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--P-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (839)
Q Consensus 88 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~ 164 (839)
.+.++..++-|..++..... .+..... . .....|.++...+ ++.+. .|+.++-+..||.
T Consensus 129 -~lwi~t~~~gl~~~~~~~~~-------------~~~~~~~~~~~l~~~~i~~i~~d~---~g~lw-igt~~~Gl~~~~~ 190 (781)
T 3v9f_A 129 -GLWVCTYYRGIEYLDIATGK-------------FTHYNKSTVPALPSEQTWTATEAE---DGKLY-IGHVEGGLSILSL 190 (781)
T ss_dssp -EEEEEESSSCEEEEETTTTE-------------EEEESTTTCTTCSCCCEEEEEEEE---TTEEE-EEETTTEEEEEET
T ss_pred -CEEEEECCCCeeEEECCCCe-------------EEeeccCcccCCCccceEEEEECC---CCCEE-EEecCCCeEEEcC
Confidence 44444434457777765321 1111100 0 1234588888876 66654 4666656888998
Q ss_pred CCCceEEEEecC------CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeE
Q 003208 165 SNSSIILEVHSP------ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (839)
Q Consensus 165 ~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (839)
.+++...-...+ ....+.++.. ..++.+.+ |+.. -+.+||...++....
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~-------------------- 245 (781)
T 3v9f_A 191 NDKSVKHFVHDPQNPNSLPGNDVRCIYK---DTNGNIWI-GTSK-GLALFNANTETFTNF-------------------- 245 (781)
T ss_dssp TTTEEEEECC--------CCSSEEEEEE---CTTCCEEE-EETT-EEEEEETTTTEEEC---------------------
T ss_pred CCCceEeeecCCCCcccCCCCceeEEEE---cCCCCEEE-EeCC-cHheECCCCCcEEEE--------------------
Confidence 776543211110 0122444433 34454444 4444 688888652111100
Q ss_pred eecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCC--ceeeec--eEeeccccceEEe
Q 003208 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS--IEEVGS--SVLYGHNARVWDC 314 (839)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~--~~~~~h~~~v~~~ 314 (839)
. ........-....|.++...++|. |..|+..+-|.++|..+.....-.. ...+.. .........|.++
T Consensus 246 --~----~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 246 --H----NNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp ----------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred --E----cCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 0 000000011246799998888775 5566664568888887654310000 000000 0001123568888
Q ss_pred EEC-CCEEEEEeCCCeEEEEcCCCceEEEeec---------ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccC
Q 003208 315 CLT-DSFIITAGEDCTCRVWGSDGKQLKMIKE---------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGS 384 (839)
Q Consensus 315 ~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~---------h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~ 384 (839)
... ...|-.|+.++-|..++........+.. -....|.++...+++. |..|+.++-|..|+........
T Consensus 319 ~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~ 397 (781)
T 3v9f_A 319 FQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIY 397 (781)
T ss_dssp EECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEEC
T ss_pred EEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEE
Confidence 877 4566677777788999884333333321 0122588999888776 4556666678888875421111
Q ss_pred cCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEee-ecC
Q 003208 385 LESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-VSE 463 (839)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~~ 463 (839)
+.. +. ......|.++...+++.+.+++..+.++.++. ...++..... ...
T Consensus 398 ~~~------------------~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~---~~~~~~~~~~~~~~ 448 (781)
T 3v9f_A 398 NKE------------------NR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNT---RLKKFQIIELEKNE 448 (781)
T ss_dssp C-------------------------------CCCSBEEEEEECTTSCEEEEETTEEEEEECS---SSCEEEECCSTTTC
T ss_pred ccC------------------CC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcC---CCCcEEEeccCCCC
Confidence 100 00 01124588999888899999998777765543 2223322211 112
Q ss_pred CCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCC
Q 003208 464 GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADP 543 (839)
Q Consensus 464 ~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 543 (839)
...+.++..... ..+.+|+. +.|..|+..+++........ ........+.. .+...+|.+.+....
T Consensus 449 ~~~v~~i~~d~~---------g~lwigt~-~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~i~~--i~~d~~g~lWigt~~ 514 (781)
T 3v9f_A 449 LLDVRVFYEDKN---------KKIWIGTH-AGVFVIDLASKKVIHHYDTS--NSQLLENFVRS--IAQDSEGRFWIGTFG 514 (781)
T ss_dssp CCCEEEEEECTT---------SEEEEEET-TEEEEEESSSSSCCEEECTT--TSSCSCSCEEE--EEECTTCCEEEEESS
T ss_pred CCeEEEEEECCC---------CCEEEEEC-CceEEEeCCCCeEEecccCc--ccccccceeEE--EEEcCCCCEEEEEcC
Confidence 345666554333 35556665 45777876654322110000 00000122223 335567777665443
Q ss_pred CCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 544 KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 544 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
.| +..|+...... ... ..... -....|.++...++|.+.+.. .+|-|..|+...
T Consensus 515 ~G-l~~~~~~~~~~-~~~--------~~~~~---l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 515 GG-VGIYTPDMQLV-RKF--------NQYEG---FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp SC-EEEECTTCCEE-EEE--------CTTTT---CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred CC-EEEEeCCCCeE-EEc--------cCCCC---CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 44 66677654321 000 00000 124568899888888876544 477658887664
No 206
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=6.3e-05 Score=88.07 Aligned_cols=523 Identities=9% Similarity=0.033 Sum_probs=263.8
Q ss_pred ccccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEee---------ecCceEEeEEeccc
Q 003208 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV---------FHGIRLHGISCNFI 76 (839)
Q Consensus 6 i~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~---------~~~~~v~~i~~~~~ 76 (839)
++-|....+.....|+||.-. ++ |. |-.|...-|..||-.+- ..++. .....|.+|...
T Consensus 7 f~~~~~~~gLs~n~V~~I~qD--~~----G~-lWigT~~GL~ryDG~~f---~~~~~~~~~~~~~~l~~n~I~~i~~d-- 74 (781)
T 3v9f_A 7 IQRLGIEQGLSNNYVLSITQD--KQ----GF-LWFATEEGLNKFDGTRF---ITYYKEEQSSSVQSITGNELNEVYTD-- 74 (781)
T ss_dssp EEEESGGGTCSCSBEEEEEEC--TT----SC-EEEEESSCEEEECSSSE---EEECCCSSCSSSCCCSCSCEEEEEEC--
T ss_pred eEECCCCCCCccCEeEEEEEC--CC----CC-EEEccCCcCccccCCce---EEEEcCCCCCccccccccccceEEEc--
Confidence 445666666666789999877 65 54 44445334777885542 22221 112358888776
Q ss_pred ccccCCCccceee-EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEec--cC---CCcceEEEEEeeccCCCcEE
Q 003208 77 NCTEGSVSTRVTF-EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PR---LSHWVFDVCFLKVCNGNRSL 150 (839)
Q Consensus 77 ~~~~~~~~~~~~~-~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---h~~~I~~~~~~~~~~~~~~l 150 (839)
++| . +.+...++-+..||..+.. ....... .. ....|.++.... .+...|
T Consensus 75 -----~~g----~~lWigt~~~Gl~~~d~~~~~-------------f~~~~~~~~~~~~l~~~~i~~i~~d~--~~~g~l 130 (781)
T 3v9f_A 75 -----PVQ----PVIWIATQRAGLNAYNYETQS-------------FSVYQYNPEDPQSLITNDVTHITSSV--QAGKGL 130 (781)
T ss_dssp -----SSS----SEEEEEESSSCEEEEETTTTE-------------EEEECCCTTCSSSCSCSCEEEEEECS--STTSEE
T ss_pred -----CCC----CEEEEEeCCCCcceECCCCCe-------------EEeeccccCCCCCcccCcceEEEecC--ccCCCE
Confidence 665 5 5555555468888876432 2111000 00 123577776532 003456
Q ss_pred EEEeCCCcEEEEecCCCceEEEEecC-----CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 151 AIGCSDNSIRVWDISNSSIILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 151 as~~~d~~i~vwd~~~~~~~~~~~~~-----~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
..++.++-|..+|..+++.. .+... ....+.++.. ..++. |..|+.++-|..|+....+...
T Consensus 131 wi~t~~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~---d~~g~-lwigt~~~Gl~~~~~~~~~~~~-------- 197 (781)
T 3v9f_A 131 WVCTYYRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTATE---AEDGK-LYIGHVEGGLSILSLNDKSVKH-------- 197 (781)
T ss_dssp EEEESSSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEE---EETTE-EEEEETTTEEEEEETTTTEEEE--------
T ss_pred EEEECCCCeeEEECCCCeEE-eeccCcccCCCccceEEEEE---CCCCC-EEEEecCCCeEEEcCCCCceEe--------
Confidence 66765556888998765543 22210 1122344432 23444 4446666568888866111000
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceE--
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV-- 303 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~-- 303 (839)
+. ........-....|.+|...+++...+ ++.+ -+.+||..+... .......
T Consensus 198 --------------~~----~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~------~~~~~~~~~ 251 (781)
T 3v9f_A 198 --------------FV----HDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF------TNFHNNPGN 251 (781)
T ss_dssp --------------EC----C--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE------EC-------
T ss_pred --------------ee----cCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE------EEEEcCCCc
Confidence 00 000000001235789998888876544 4455 588899766543 1110000
Q ss_pred -eeccccceEEeEEC-CCEEEEEeCCCeEEEEcCCCceEEEeec--------------ccCCceEEEEEccCCCEEEEEe
Q 003208 304 -LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKE--------------HIGRGIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 304 -~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~--------------h~~~~i~~~~~~~~~~~l~t~~ 367 (839)
.......|.++... ...+..|+..+-|.+++........+.. -....|.++..+++|. |..|+
T Consensus 252 ~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt 330 (781)
T 3v9f_A 252 IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGT 330 (781)
T ss_dssp ----CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEE
T ss_pred cccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEe
Confidence 01123568888876 5677777775668888884332222211 1112589999988876 55677
Q ss_pred CCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEe
Q 003208 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (839)
Q Consensus 368 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~ 447 (839)
.++-|..++........+... +.. .. ........|.+++..+++.+.+++..+.+..++.
T Consensus 331 ~~~Gl~~~~~~~~~~~~~~~~-----------------~~~-~~--~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 331 WGGGINFISNAPPTFHTWSYS-----------------PTQ-MN--ESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 390 (781)
T ss_dssp BSSCEEEECSSCCSCEEEC---------------------C-CC--SSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred cCCeEEEeCCCCCcceeeccC-----------------ccc-cc--cCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence 777788888754322211100 000 00 0001124589999998899999997777776543
Q ss_pred cCCCCceeEEEee--ecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEe
Q 003208 448 CDMDSVNWNKILQ--VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLL 525 (839)
Q Consensus 448 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (839)
. ...+..... ......+.++..... ..|.+|+.++.+..++..+++... +.........+.
T Consensus 391 ~---~~~~~~~~~~~~~~~~~v~~i~~d~~---------g~lWigt~~~Gl~~~~~~~~~~~~-----~~~~~~~~~~v~ 453 (781)
T 3v9f_A 391 G---KRVAIYNKENRELLSNSVLCSLKDSE---------GNLWFGTYLGNISYYNTRLKKFQI-----IELEKNELLDVR 453 (781)
T ss_dssp T---EEEEECC-----CCCSBEEEEEECTT---------SCEEEEETTEEEEEECSSSCEEEE-----CCSTTTCCCCEE
T ss_pred C---CCeEEEccCCCCCCCcceEEEEECCC---------CCEEEEeccCCEEEEcCCCCcEEE-----eccCCCCCCeEE
Confidence 2 111111100 112344555554332 345567666667777654432110 000001112222
Q ss_pred eEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEE
Q 003208 526 GTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (839)
Q Consensus 526 ~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~ 605 (839)
. .+...++.+.+... +-|.+++..+..... . ..... .......|.++...++|.+.+ |+..+-|.
T Consensus 454 ~--i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~-~--------~~~~~-~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~ 518 (781)
T 3v9f_A 454 V--FYEDKNKKIWIGTH--AGVFVIDLASKKVIH-H--------YDTSN-SQLLENFVRSIAQDSEGRFWI-GTFGGGVG 518 (781)
T ss_dssp E--EEECTTSEEEEEET--TEEEEEESSSSSCCE-E--------ECTTT-SSCSCSCEEEEEECTTCCEEE-EESSSCEE
T ss_pred E--EEECCCCCEEEEEC--CceEEEeCCCCeEEe-c--------ccCcc-cccccceeEEEEEcCCCCEEE-EEcCCCEE
Confidence 2 23455677666443 457788876543100 0 00000 001135688998888888764 45544577
Q ss_pred EEecccccccCCCccceeecCcceeeecccCCCceeEEEEEeccCCceEEEeecCcCcEEEEEEecC
Q 003208 606 LFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (839)
Q Consensus 606 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 672 (839)
.|+..... ...+... .+. ....|.+|... .++...+++. +|.+..|+....
T Consensus 519 ~~~~~~~~--------~~~~~~~---~~l-~~~~i~~i~~d---~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 519 IYTPDMQL--------VRKFNQY---EGF-CSNTINQIYRS---SKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp EECTTCCE--------EEEECTT---TTC-SCSCEEEEEEC---TTSCEEEEET-TEEEEESCTTTC
T ss_pred EEeCCCCe--------EEEccCC---CCC-CCCeeEEEEEC---CCCCEEEEEC-CCceEEECCCCC
Confidence 78765321 1111100 011 12468888765 5666666655 776566665443
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.05 E-value=2.1e-07 Score=95.90 Aligned_cols=240 Identities=9% Similarity=0.037 Sum_probs=148.8
Q ss_pred eeEEEEecCCCCCCCcceEEE-------ee-CCeeEEEECCCCeeeeEEee----ecCceEEeEEecccccccCCC-ccc
Q 003208 20 ISALCFVHLPSHLSSLPFLLA-------GS-GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSV-STR 86 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~-------g~-~~~v~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~~~-~~~ 86 (839)
..+++|+ ++ +.++++ +. ++.|.+||..+++... +.. .....+.+++++ ++ |
T Consensus 20 ~~~~~~~--~~----g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~-------~~~g-- 83 (314)
T 1pjx_A 20 AEGPVFD--KN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCD-------RDAN-- 83 (314)
T ss_dssp CEEEEEC--TT----SCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEEC-------SSSS--
T ss_pred ccCceEC--CC----CCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEe-------cCCC--
Confidence 5789999 88 777777 34 7899999988877543 221 012358899998 87 6
Q ss_pred eeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeee-Ee-ccC-CCcceEEEEEeeccCCCcEEEEEeCC-------
Q 003208 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV-QS-LPR-LSHWVFDVCFLKVCNGNRSLAIGCSD------- 156 (839)
Q Consensus 87 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-h~~~I~~~~~~~~~~~~~~las~~~d------- 156 (839)
.++++..+..|.+|+.+ .. .... .. ..+ ....+.++++.| ++.+.++...+
T Consensus 84 --~l~v~~~~~~l~~~d~~-g~-------------~~~~~~~~~~~~~~~~~~~i~~d~---~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 84 --QLFVADMRLGLLVVQTD-GT-------------FEEIAKKDSEGRRMQGCNDCAFDY---EGNLWITAPAGEVAPADY 144 (314)
T ss_dssp --EEEEEETTTEEEEEETT-SC-------------EEECCSBCTTSCBCBCCCEEEECT---TSCEEEEECBCBCTTSCC
T ss_pred --cEEEEECCCCEEEEeCC-CC-------------EEEEEeccCCCccccCCcCEEECC---CCCEEEEecCcccccccc
Confidence 55555555578888876 32 1111 11 111 224588999999 88877766554
Q ss_pred --------CcEEEEecCCCceEEEEecCCceeEEEEeec-cCCccceEE-EEeecCCeEEEEEeec-cccccCCCCCCCc
Q 003208 157 --------NSIRVWDISNSSIILEVHSPERCLLYSMKLW-GDNLEALRI-ASGTIYNEIIVWKVDW-EHVAPLLNSPEGN 225 (839)
Q Consensus 157 --------~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~l-~sg~~dg~i~vw~~~~-~~~~~~~~~~~~~ 225 (839)
+.|..||.. ++.......... ...+.+. ..++++..| ++...++.|.+|++.. ++..
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~--~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~--------- 212 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDTAFQF--PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE--------- 212 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEEEESS--EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---------
T ss_pred cccccCCCCeEEEECCC-CCEEEeccCCCC--cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc---------
Confidence 567777765 443322221111 1223220 012667554 4445678999999761 1000
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
.......+.++. ..+..++++++|+.+++...++.|.+||..+++. .. .+
T Consensus 213 -------------------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-----~~-----~~ 263 (314)
T 1pjx_A 213 -------------------NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-----KM-----RI 263 (314)
T ss_dssp -------------------EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-----SE-----EE
T ss_pred -------------------cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-----eE-----EE
Confidence 111233344444 6688999999999888888889999999875443 22 33
Q ss_pred eccccceEEeEEC--CC-EEEEEeCCCeEEEEcC
Q 003208 305 YGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS 335 (839)
Q Consensus 305 ~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~ 335 (839)
..+...+.+++|+ ++ ++++...++.|..|++
T Consensus 264 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 264 RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 4455678899997 45 4455556688988887
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.04 E-value=1.2e-07 Score=98.15 Aligned_cols=273 Identities=11% Similarity=0.073 Sum_probs=168.8
Q ss_pred CcCccccccCCCceeeee-----eEEEEecCCCCCCCcceEEEee-----------CCeeEEEECCCCeeeeEEeeec--
Q 003208 3 KKDLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH-- 64 (839)
Q Consensus 3 d~~i~~w~~~~~~~~~~V-----t~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~~~~~~~~~~~~~-- 64 (839)
+++|.+.|..+.+..+.| ..++++ || +++++++. ++.|.+||..+++.+.++....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~s--pD----G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVA--DD----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 567888898887743322 259999 99 66665543 4689999999999999987643
Q ss_pred ----CceEEeEEecccccccCCCccceeeEEEEE-c-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEE
Q 003208 65 ----GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (839)
Q Consensus 65 ----~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (839)
+.....++++ |||+ .++++. . ++.|.++|+.+ .+.+.++..- + . ..
T Consensus 132 r~~~g~~P~~~a~s-------pDGk---~lyVan~~~~~~VsVID~~t---------------~~vv~tI~v~-g-~-~~ 183 (386)
T 3sjl_D 132 RFLVGTYPWMTSLT-------PDGK---TLLFYQFSPAPAVGVVDLEG---------------KAFKRMLDVP-D-C-YH 183 (386)
T ss_dssp CCCBSCCGGGEEEC-------TTSS---EEEEEECSSSCEEEEEETTT---------------TEEEEEEECC-S-E-EE
T ss_pred ccccCCCCceEEEc-------CCCC---EEEEEEcCCCCeEEEEECCC---------------CcEEEEEECC-C-c-ce
Confidence 2246789999 9995 455544 3 68999999986 3455554321 1 1 12
Q ss_pred EEeeccCCCcEEEEEeCCCcEEEEecCC-CceEEEEec---CCceeEEE-EeeccCCccceEEEEeecCCeEEEEEeecc
Q 003208 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHS---PERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (839)
Q Consensus 139 ~~~~~~~~~~~las~~~d~~i~vwd~~~-~~~~~~~~~---~~~~~~~s-~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~ 213 (839)
.+ |. ....+++.+.||.+.+.++.+ ++....... .....++. ..| ..+++.+++ .+.+|.|++.|...+
T Consensus 184 ~~-P~--g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~--~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 184 IF-PT--APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY--SQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EE-EE--ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE--ETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred ee-cC--CCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee--EcCCCcEEE-EeCCCEEEEEECCCC
Confidence 23 41 445666778899999999876 554332211 11111111 111 134665444 455799999998622
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe---------c-CCCCeEEEEEcCCCCEEEEEeC-------
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---------G-HEGSIFRIEWSSCGSKLVSVSD------- 276 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-h~~~V~~l~~~~~~~~l~s~s~------- 276 (839)
.. +.+..+. + ..+....+++++++++++....
T Consensus 258 ~~-------------------------------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 258 DA-------------------------------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp SC-------------------------------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred cc-------------------------------eeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 10 1111110 0 1123335677999988887643
Q ss_pred ---CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEE-EeCCCeEEEEcC-CCceEEEeecccC
Q 003208 277 ---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIIT-AGEDCTCRVWGS-DGKQLKMIKEHIG 348 (839)
Q Consensus 277 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s-~~~dg~i~vw~~-~~~~~~~~~~h~~ 348 (839)
.+.|.+.|+.+.+. ++.+ .. ..+++.++++ ++ +|++ ...++.|.++|. +++.+.++.....
T Consensus 307 k~~~~~V~viD~~t~kv-----~~~i----~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 307 KTASRFVVVLDAKTGER-----LAKF----EM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp TSCEEEEEEEETTTCCE-----EEEE----EE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred CCCCCEEEEEECCCCeE-----EEEE----EC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 25799999988765 3322 11 2367889998 33 5655 456899999999 8888888865433
Q ss_pred CceEEEEEccC
Q 003208 349 RGIWRCLYDSL 359 (839)
Q Consensus 349 ~~i~~~~~~~~ 359 (839)
-..|.+++|
T Consensus 376 --p~~l~~s~d 384 (386)
T 3sjl_D 376 --GPQVITTAD 384 (386)
T ss_dssp --SCCEEEECC
T ss_pred --CceeEECCc
Confidence 345666655
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.00 E-value=5.5e-09 Score=108.64 Aligned_cols=171 Identities=9% Similarity=0.014 Sum_probs=126.1
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc-----------eEEEEecCCceeEEEEeeccCCccceEEEEeecC
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d 202 (839)
.+..+++++ ...++++|+.+ .+++|++.+.. ...... ... ++.+.| ++.+|+++ .+
T Consensus 39 ~~nlLais~---~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f-----d~~~L~v~-~~ 105 (388)
T 1xip_A 39 SLQNLDISN---SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF-----HGDQVLVS-TR 105 (388)
T ss_dssp CCBCEEEET---TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE-----ETTEEEEE-ES
T ss_pred cccEEEEcC---CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE-----CCCEEEEE-cC
Confidence 588999999 99999999987 56669875433 112222 223 666665 67888888 88
Q ss_pred CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003208 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (839)
Q Consensus 203 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~i 282 (839)
+.|++||+. ..........|+..+.++.+.+. .+++++.||.|.+
T Consensus 106 ~~l~v~dv~---------------------------------sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v 150 (388)
T 1xip_A 106 NALYSLDLE---------------------------------ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSA 150 (388)
T ss_dssp SEEEEEESS---------------------------------STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEE
T ss_pred CcEEEEEch---------------------------------hhhccCccceeecceeeEEecCC--CEEEEECCCCEEE
Confidence 999999987 33333345567778888887654 3999999999999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcCCCce---EEEe------e---cccCCc
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ---LKMI------K---EHIGRG 350 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~---~~~~------~---~h~~~~ 350 (839)
||+.+... . .+...|.|++|+++-++.|..||++++|+.++.. ..++ . .|.. .
T Consensus 151 ~dl~~~~~------------~--~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~ 215 (388)
T 1xip_A 151 LDLRTKST------------K--QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-S 215 (388)
T ss_dssp EETTTCCE------------E--EEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-E
T ss_pred EEccCCcc------------c--cccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-e
Confidence 99987643 1 1456899999997668999999999999885544 4455 2 2455 6
Q ss_pred eEEEEEccCCCEEEEEe
Q 003208 351 IWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~ 367 (839)
|.++.|.+++.++++=+
T Consensus 216 V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 216 PLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEESSSSEEEEEEE
T ss_pred EEEEEEecCCeEEEEEc
Confidence 99999999988877533
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.99 E-value=8.6e-08 Score=111.68 Aligned_cols=236 Identities=9% Similarity=0.003 Sum_probs=149.2
Q ss_pred eEEeEEecccccccCCCccceeeEEEEE-c---C--cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEE
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALF-G---E--KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~---~--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (839)
.+.+++|| |||+ .|+.. . + ..|++||+..+. .+.. ..+...+..++|
T Consensus 164 ~~~~~~~S-------PDG~----~la~~~~~~G~e~~~i~v~dl~tg~---------------~~~~-~~~~~~~~~~~w 216 (741)
T 1yr2_A 164 ALDAWAAS-------DDGR----LLAYSVQDGGSDWRTVKFVGVADGK---------------PLAD-ELKWVKFSGLAW 216 (741)
T ss_dssp EEEEEEEC-------TTSS----EEEEEEEETTCSEEEEEEEETTTCC---------------EEEE-EEEEEESCCCEE
T ss_pred EEEeEEEC-------CCCC----EEEEEEcCCCCceEEEEEEECCCCC---------------CCCc-cCCCceeccEEE
Confidence 57889999 9984 44433 2 2 469999998643 1111 111112357899
Q ss_pred eeccCCCcEEEEEeCCCc--------------EEEEecCCCce--EEEEecCCc-eeEEEEeeccCCccceEEEEeecCC
Q 003208 141 LKVCNGNRSLAIGCSDNS--------------IRVWDISNSSI--ILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYN 203 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~--------------i~vwd~~~~~~--~~~~~~~~~-~~~~s~~~~~~~~~~~~l~sg~~dg 203 (839)
+| + +.|+.++.++. |++|++.++.. ......+.. ....++.+ ++++.+|+..+.++
T Consensus 217 sp---D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~---SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 217 LG---N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV---SSDGRWVVITSSEG 289 (741)
T ss_dssp ST---T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE---CTTSCEEEEEEECT
T ss_pred EC---C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE---CCCCCEEEEEEEcc
Confidence 99 9 88888776554 88999977652 222222221 12344444 78998888776543
Q ss_pred -----eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc--eeeEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 003208 204 -----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA--VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 204 -----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 276 (839)
.|++||+. .+ .....+..+...+.... +|+++.|+..+.
T Consensus 290 ~~~~~~l~~~d~~---------------------------------~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 290 TDPVNTVHVARVT---------------------------------NGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp TCSCCEEEEEEEE---------------------------------TTEECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred CCCcceEEEEECC---------------------------------CCCCcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 89999987 32 21344555555555553 488988888776
Q ss_pred C----CcEEEEEcccCc-cCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC--CCceEEEeecccC
Q 003208 277 D----RSARIWEVRAEY-WKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIG 348 (839)
Q Consensus 277 d----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~--~~~~~~~~~~h~~ 348 (839)
+ +.|.+||+.+.. . .+ .....+...+..+.+. +.++++...|+..++|.+ +++....+..+..
T Consensus 336 ~~~~~~~l~~~d~~~~~~~-----~~----~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 406 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPR-----FD----TVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGI 406 (741)
T ss_dssp TTCTTCEEEEEECSSSSCE-----EE----EEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSS
T ss_pred CCCCCCEEEEEeCCCCccc-----cE----EEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCC
Confidence 4 459999987641 1 11 1233444556677777 567788888988777755 5776776665322
Q ss_pred CceEEEEEccCCCEEE-EEe---CCCcEEEEecCC
Q 003208 349 RGIWRCLYDSLSSLLV-TAG---FDSAIKVHQFQA 379 (839)
Q Consensus 349 ~~i~~~~~~~~~~~l~-t~~---~dg~i~iw~~~~ 379 (839)
..+..+.++|++..++ +.+ ..++|.+||+.+
T Consensus 407 ~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 407 GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 2588899999887554 322 347899999855
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.98 E-value=1.6e-08 Score=105.11 Aligned_cols=175 Identities=14% Similarity=0.062 Sum_probs=121.0
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCe---------eeeEEeeecCceEEeEEecccccccCCCcccee
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---------LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 88 (839)
.++..|+++ +. ..++++|+...++||++++.+ ........... |+.++|. .
T Consensus 38 ~~~nlLais--~~----~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd-------~------ 97 (388)
T 1xip_A 38 ASLQNLDIS--NS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFH-------G------ 97 (388)
T ss_dssp SCCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEE-------T------
T ss_pred ccccEEEEc--CC----CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEEC-------C------
Confidence 369999999 87 788999887788889976443 11111222233 8888883 2
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.+++++.++.|++||+.... .......|...|.++.+.+ . .+|+++.||.|.+||+.++.
T Consensus 98 ~~L~v~~~~~l~v~dv~sl~---------------~~~~~~~~~~~v~~i~~~~---p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 98 DQVLVSTRNALYSLDLEELS---------------EFRTVTSFEKPVFQLKNVN---N--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp TEEEEEESSEEEEEESSSTT---------------CEEEEEECSSCEEEEEECS---S--EEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEcCCcEEEEEchhhh---------------ccCccceeecceeeEEecC---C--CEEEEECCCCEEEEEccCCc
Confidence 34555588999999987522 2223445667788887765 3 28889999999999999877
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
... +.. .+.++++ +++| ++.|..||.+++|+.. ....
T Consensus 158 ~~~-~~~----~Vs~v~W---SpkG--~~vg~~dg~i~~~~~~---------------------------------~~~~ 194 (388)
T 1xip_A 158 TKQ-LAQ----NVTSFDV---TNSQ--LAVLLKDRSFQSFAWR---------------------------------NGEM 194 (388)
T ss_dssp EEE-EEE----SEEEEEE---CSSE--EEEEETTSCEEEEEEE---------------------------------TTEE
T ss_pred ccc-ccC----CceEEEE---cCCc--eEEEEcCCcEEEEcCC---------------------------------Cccc
Confidence 653 222 2344444 5777 6789999999999887 2221
Q ss_pred --eEEE------e---cCCCCeEEEEEcCCCCEEEEEe
Q 003208 249 --LFRL------V---GHEGSIFRIEWSSCGSKLVSVS 275 (839)
Q Consensus 249 --~~~~------~---~h~~~V~~l~~~~~~~~l~s~s 275 (839)
...+ . +|...|.+|.|.+++.++++-.
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 2233 2 4789999999999988887643
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.96 E-value=2.9e-07 Score=94.83 Aligned_cols=239 Identities=8% Similarity=0.014 Sum_probs=146.8
Q ss_pred eEEeEEecccccccCCCccceeeEEEE--------EcCcEEEEEEeeccCCCCCCCCCccccceeeeEe--ccCCCcceE
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVAL--------FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--LPRLSHWVF 136 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~I~ 136 (839)
.+.+++|+ ++| .++++ ..++.|.+|+..... ...... ..++...+.
T Consensus 19 ~~~~~~~~-------~~g----~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 19 GAEGPVFD-------KNG----DFYIVAPEVEVNGKPAGEILRIDLKTGK-------------KTVICKPEVNGYGGIPA 74 (314)
T ss_dssp TCEEEEEC-------TTS----CEEEEETTCEETTEECCEEEEECTTTCC-------------EEEEECCEETTEECCEE
T ss_pred CccCceEC-------CCC----CEEEEEeccccCCCCCCEEEEEeCCCCc-------------EEEEEecccCCCCCCCc
Confidence 36788888 777 44444 567889999875432 111111 123456789
Q ss_pred EEEEeeccCC-CcEEEEEeCCCcEEEEecCCCceEEE-EecC---CceeEEEEeeccCCccceEEEEeecC---------
Q 003208 137 DVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILE-VHSP---ERCLLYSMKLWGDNLEALRIASGTIY--------- 202 (839)
Q Consensus 137 ~~~~~~~~~~-~~~las~~~d~~i~vwd~~~~~~~~~-~~~~---~~~~~~s~~~~~~~~~~~~l~sg~~d--------- 202 (839)
++++.+ + +.++++. ..+.|.+||.. ++.... .... .......+.+ ++++.+.++...+
T Consensus 75 ~i~~~~---~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 75 GCQCDR---DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF---DYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEECS---SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE---CTTSCEEEEECBCBCTTSCCCB
T ss_pred eEEEec---CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE---CCCCCEEEEecCcccccccccc
Confidence 999998 8 6655444 44579999987 654322 2111 1112334444 4667766665544
Q ss_pred ------CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEc----CCCCEEE
Q 003208 203 ------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS----SCGSKLV 272 (839)
Q Consensus 203 ------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~ 272 (839)
+.|..|+.. ++ ...+..+......++++ |+++.++
T Consensus 147 ~~~~~~~~l~~~~~~----------------------------------g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD----------------------------------GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TTSSSCEEEEEECTT----------------------------------SC-EEEEEEEESSEEEEEEEECTTSCEEEEE
T ss_pred cccCCCCeEEEECCC----------------------------------CC-EEEeccCCCCcceEEEecccCCCCCEEE
Confidence 344444422 11 11222234557889999 9997665
Q ss_pred EE-eCCCcEEEEEccc-CccCCCCCceeeec-eEeeccc-cceEEeEEC--CCEEEEEeCCCeEEEEcCC-CceEEEeec
Q 003208 273 SV-SDDRSARIWEVRA-EYWKDSDSIEEVGS-SVLYGHN-ARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKE 345 (839)
Q Consensus 273 s~-s~d~~i~iwd~~~-~~~~~~~~~~~~~~-~~~~~h~-~~v~~~~~~--~~~l~s~~~dg~i~vw~~~-~~~~~~~~~ 345 (839)
.+ ..++.|.+||... +.. ..... ..+.++. ..+..++++ +++.++...++.|.+|+.. ++.+..+..
T Consensus 192 v~~~~~~~i~~~~~~~~g~~------~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 265 (314)
T 1pjx_A 192 VAETPTKKLWSYDIKGPAKI------ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp EEETTTTEEEEEEEEETTEE------EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred EEECCCCeEEEEECCCCCcc------ccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence 54 5678999999862 221 11100 1233333 557788887 5677777788999999995 777777766
Q ss_pred ccCCceEEEEEccCCCEEE-EEeCCCcEEEEecCC
Q 003208 346 HIGRGIWRCLYDSLSSLLV-TAGFDSAIKVHQFQA 379 (839)
Q Consensus 346 h~~~~i~~~~~~~~~~~l~-t~~~dg~i~iw~~~~ 379 (839)
+.. .+.+++++++++.|+ +...++.|..|++..
T Consensus 266 ~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 655 589999999999554 445568899998753
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.94 E-value=1.1e-07 Score=110.62 Aligned_cols=245 Identities=10% Similarity=0.002 Sum_probs=150.9
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee--C----CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEE
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~--~----~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l 91 (839)
..+..++|| || +++|+.+. + ..|++||+.+|+.+.. .. ....+..++|+ || + .++
T Consensus 163 ~~~~~~~~S--PD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-~~~~~~~~~ws-------pD-~---~l~ 223 (741)
T 1yr2_A 163 TALDAWAAS--DD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-KWVKFSGLAWL-------GN-D---ALL 223 (741)
T ss_dssp EEEEEEEEC--TT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-EEEESCCCEES-------TT-S---EEE
T ss_pred EEEEeEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-CCceeccEEEE-------CC-C---EEE
Confidence 368899999 99 77777655 2 3699999999987543 11 12123578888 88 5 555
Q ss_pred EEEcCc--------------EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC-
Q 003208 92 ALFGEK--------------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD- 156 (839)
Q Consensus 92 ~~~~~~--------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d- 156 (839)
.+..+. .|++|++.+... ...++.....+...+..+.|+| ++++|+..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~ 289 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-----------ADQPVFATPELPKRGHGASVSS---DGRWVVITSSEG 289 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGG-----------GCEEEECCTTCTTCEEEEEECT---TSCEEEEEEECT
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCch-----------hCEEEeccCCCCeEEEEEEECC---CCCEEEEEEEcc
Confidence 555433 377888754320 0134444455556789999999 99988877654
Q ss_pred ----CcEEEEecCCC--ceEEEEecCCceeEEEEeeccCCccceEEEEeec----CCeEEEEEeeccccccCCCCCCCcc
Q 003208 157 ----NSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 157 ----~~i~vwd~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~----dg~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
..|.+||+.++ +....+..+.....+.+ .+++..|+..+. ++.|.+|++.
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-----~~dg~~l~~~s~~~~~~~~l~~~d~~--------------- 349 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-----DGVGDQLWFVSGDGAPLKKIVRVDLS--------------- 349 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEECS---------------
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCC---------------
Confidence 38999999876 31444444433322221 256777766554 3458888876
Q ss_pred CCCCCCCceeeEeecccccc--eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc-CccCCCCCceeeeceE
Q 003208 227 AHGSSSDFKCFKLQDQQHTA--VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSV 303 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~ 303 (839)
.. .....+..+...+..+.++ ++..+++...|+..++|.+.. +.. .+ .
T Consensus 350 ------------------~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-----~~-----~ 400 (741)
T 1yr2_A 350 ------------------GSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP-----AG-----A 400 (741)
T ss_dssp ------------------SSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE-----EE-----E
T ss_pred ------------------CCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc-----ee-----e
Confidence 21 2222334455567778887 566788888999888886652 221 11 2
Q ss_pred eec-cccceEEeEEC--CC-EEEEEe---CCCeEEEEcCCCceEEEee
Q 003208 304 LYG-HNARVWDCCLT--DS-FIITAG---EDCTCRVWGSDGKQLKMIK 344 (839)
Q Consensus 304 ~~~-h~~~v~~~~~~--~~-~l~s~~---~dg~i~vw~~~~~~~~~~~ 344 (839)
+.. +...+..+.++ +. ++++.+ ..+++++||+.+.....++
T Consensus 401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 222 35567777776 33 443333 3478999998433344443
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.94 E-value=9.7e-07 Score=89.99 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=139.6
Q ss_pred EEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
..+..|+ ++++ .++.+. .++.|..|+..... . ..+ .+...+.+++++| +
T Consensus 15 ~Egp~w~-------~~~~---~l~~~d~~~~~i~~~d~~~~~-------------~---~~~-~~~~~~~~i~~~~---d 64 (297)
T 3g4e_A 15 GESPVWE-------EVSN---SLLFVDIPAKKVCRWDSFTKQ-------------V---QRV-TMDAPVSSVALRQ---S 64 (297)
T ss_dssp EEEEEEE-------TTTT---EEEEEETTTTEEEEEETTTCC-------------E---EEE-ECSSCEEEEEEBT---T
T ss_pred ccCCeEE-------CCCC---EEEEEECCCCEEEEEECCCCc-------------E---EEE-eCCCceEEEEECC---C
Confidence 4567787 6432 444443 47899999987532 1 111 2346789999999 8
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecC---CceeEEEEeeccCCccceEEEEeecC---------CeEEEEEeeccc
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVDWEH 214 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~l~sg~~d---------g~i~vw~~~~~~ 214 (839)
++++++ . ++.|.+||..+++........ .......+.+ ++++.++++.... ..-.+|.+..
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~---d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-- 137 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV---DPAGRYFAGTMAEETAPAVLERHQGALYSLFP-- 137 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE---CTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE---CCCCCEEEecCCcccccccccCCCcEEEEEEC--
Confidence 885554 4 568999999877654332221 1122344444 5677755543221 2334555440
Q ss_pred cccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcc--cCccC
Q 003208 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVR--AEYWK 291 (839)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~d~~i~iwd~~--~~~~~ 291 (839)
..+ ...+..+......++|+|+++.|+ +.+.++.|..|++. ++..
T Consensus 138 ------------------------------~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~- 185 (297)
T 3g4e_A 138 ------------------------------DHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI- 185 (297)
T ss_dssp ------------------------------TSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-
T ss_pred ------------------------------CCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-
Confidence 111 112223345678999999998765 45567889999974 3321
Q ss_pred CCCCceeeec-eEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEc-cCCCEEEEE
Q 003208 292 DSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTA 366 (839)
Q Consensus 292 ~~~~~~~~~~-~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~-~~~~~l~t~ 366 (839)
..... ..+..+...+..+++. +++.++....+.|.+||. +++.+..+..+.. .+++++|. |+++.|+.+
T Consensus 186 -----~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 186 -----SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp -----EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEE
T ss_pred -----cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEE
Confidence 11110 1222344567788887 667777777889999999 5999888887755 58999998 888766655
Q ss_pred eC
Q 003208 367 GF 368 (839)
Q Consensus 367 ~~ 368 (839)
+.
T Consensus 260 ~~ 261 (297)
T 3g4e_A 260 CA 261 (297)
T ss_dssp EB
T ss_pred cC
Confidence 54
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.93 E-value=1.8e-06 Score=90.70 Aligned_cols=264 Identities=10% Similarity=-0.037 Sum_probs=157.6
Q ss_pred CccccccCCCceeeee-----eEEEEecCCCCCCCcceEEEee-----------CCeeEEEECCCCeeeeEEeee-c---
Q 003208 5 DLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF-H--- 64 (839)
Q Consensus 5 ~i~~w~~~~~~~~~~V-----t~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~~~~~~~~~~~~-~--- 64 (839)
+|.++|..+++....| ..++|+ || +++|+++. ++.|.+||..+.+.+.++... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~s--pD----g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAA--HS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEEC--CC----CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 6789998887743322 389999 99 77777764 468999999999988887653 1
Q ss_pred --CceEEeEEecccccccCCCccceeeEEEEE-c-CcEEEEEEeeccCCCCCCCCCccccceeeeEe-ccCCCcceEEEE
Q 003208 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVC 139 (839)
Q Consensus 65 --~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~~~ 139 (839)
+.....++++ |||+ .++++. . +++|.++| ++ ++.+.. +..- . ++.
T Consensus 122 ~~g~~p~~~~~s-------pDG~---~l~v~n~~~~~~v~viD-~t---------------~~~~~~~i~~~-~---~~~ 171 (373)
T 2mad_H 122 DVGPYSWMNANT-------PNNA---DLLFFQFAAGPAVGLVV-QG---------------GSSDDQLLSSP-T---CYH 171 (373)
T ss_pred ccCCCccceEEC-------CCCC---EEEEEecCCCCeEEEEE-CC---------------CCEEeEEcCCC-c---eEE
Confidence 1235678899 9985 455444 3 58899999 75 334444 3321 1 244
Q ss_pred EeeccCCC-cEEEEEeCCCcEEEEecCCCceEEEEe-----cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecc
Q 003208 140 FLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH-----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (839)
Q Consensus 140 ~~~~~~~~-~~las~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~ 213 (839)
+.| .+ ..+++.+.||.+.++|. +++...... ...........+ .+++..++..+..+.+.+.|+...
T Consensus 172 ~~~---~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 172 IHP---GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ---ANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEe---CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee---EecCCEEEEEcCCceEEEEeccCC
Confidence 556 43 45566778999999999 877664322 111111111111 122333333336788888887611
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEE
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIW 283 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------d~~i~iw 283 (839)
... .+..|+.. ..... ...-.......+.++|++++++.+.. .+.|.++
T Consensus 245 ~~~-------------------v~~~~~~~-~~~~~-~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 245 GAT-------------------NKAPIDAL-SGGRK-ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred cce-------------------Eeeeeeec-CCccc-ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 100 00000000 00000 00001123445788999988887653 3579999
Q ss_pred EcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEe-CCCeEEEEcC-CCceEEEe
Q 003208 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~-~dg~i~vw~~-~~~~~~~~ 343 (839)
|..+.+. +. .+ .-....+.++|+ ++ .++++. .++.|.++|. +++.+..+
T Consensus 304 D~~t~~v-----v~-----~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 304 TGLVGQT-----SS-----QI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCEE-----EE-----EE-ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9988655 22 22 223357889998 45 677777 5899999999 77777763
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=3.1e-07 Score=98.08 Aligned_cols=234 Identities=11% Similarity=0.025 Sum_probs=144.0
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
.....|+++ ++ ++++++.. ++.|++||.++++........ ...+ ++++ ++++ .++++..+
T Consensus 131 ~~P~~la~d--~~----g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~-------~~g~---~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAV--GN----NTVLAYQRDDPRVRLISVDDNKVTTVHPGF--KGGK-PAVT-------KDKQ---RVYSIGWE 191 (409)
T ss_dssp CCEEEEEEC--ST----TEEEEEETTTTEEEEEETTTTEEEEEEETC--CBCB-CEEC-------TTSS---EEEEEBSS
T ss_pred CCceEEEEe--CC----CCEEEEecCCCcEEEEECCCCEEEEeeccC--CCCc-eeEe-------cCCC---cEEEEecC
Confidence 456799999 88 77777766 689999999887765544432 2344 8888 7873 45555443
Q ss_pred c--EEEEEEeeccCCCCCCCCCccccceeeeEeccC-CCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEE-
Q 003208 97 K--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE- 172 (839)
Q Consensus 97 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~- 172 (839)
+ .|.+++..... ....+..+.. ....+.+++++| ++..|+.+..++.|+.||..++.....
T Consensus 192 ~~~~I~~~d~~~~~------------~~~~~g~~~~~~~~~p~~iav~p---~~g~lyv~d~~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 192 GTHTVYVYMKASGW------------APTRIGQLGSTFSGKIGAVALDE---TEEWLYFVDSNKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp TTCEEEEEEGGGTT------------CEEEEEECCTTSCSCCCBCEECT---TSSEEEEECTTCEEEEEETTTCCEEEEE
T ss_pred CCceEEEEEcCCCc------------eeEEeeeccchhcCCcEEEEEeC---CCCeEEEEECCCcEEEEECCCCCEEEEe
Confidence 3 77777765422 0112212222 446678899998 666666677788999999987653322
Q ss_pred ---EecCCceeEE-EEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 173 ---VHSPERCLLY-SMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 173 ---~~~~~~~~~~-s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
........-+ .+.+ ++ ++.++++....+.|+.|+... .
T Consensus 257 ~~~~~g~~~~~P~~~ia~---~p~~g~lyv~d~~~~~I~~~~~~g---------------------------------~- 299 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIY---YFVDSNFYMSDQNLSSVYKITPDG---------------------------------E- 299 (409)
T ss_dssp ECCCCSCCCCSSCCEEEE---ETTTTEEEEEETTTTEEEEECTTC---------------------------------C-
T ss_pred cccccCCCCCCccccEEE---eCCCCEEEEEeCCCCEEEEEecCC---------------------------------C-
Confidence 1111111001 3333 35 466777777788899998651 0
Q ss_pred eeEEEecC---------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcccCccCCCCCceeeeceEeecc----
Q 003208 248 NLFRLVGH---------------EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---- 307 (839)
Q Consensus 248 ~~~~~~~h---------------~~~V~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---- 307 (839)
+..+.++ -....+++++|+|+.+++-+ .++.|+.|++.++.. ..+.++
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-----------~~~~g~~~~~ 367 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-----------STVAGQVDVA 367 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-----------EEEEECTTCB
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-----------EEEeCCCCCC
Confidence 1111111 24578999999999777777 889999999766543 122222
Q ss_pred -----------ccceEEeEEC--CCEEEEEeCCCeEEEEc
Q 003208 308 -----------NARVWDCCLT--DSFIITAGEDCTCRVWG 334 (839)
Q Consensus 308 -----------~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 334 (839)
-.....++++ +.++++-..++.|+.++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 2346777776 34445555556666554
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.92 E-value=9.2e-07 Score=93.75 Aligned_cols=259 Identities=7% Similarity=-0.028 Sum_probs=154.5
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEE-eEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
+.+++.+.++.|..+|.++|+.+.+...... +. ...+ .++ .+++...++.|..+|..++.
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~--------~~~----~v~v~~~~g~l~~~d~~tG~----- 164 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVV--------SDG----LVLIHTSNGQLQALNEADGA----- 164 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSCCEE--------ETT----EEEEECTTSEEEEEETTTCC-----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcCCEE--------ECC----EEEEEcCCCeEEEEECCCCc-----
Confidence 4444444489999999999999887765322 21 1222 233 66667778999999986532
Q ss_pred CCCccccceeeeEeccCCCcce-----EEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeE---EEEe
Q 003208 114 YQPETCVNLSLVQSLPRLSHWV-----FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL---YSMK 185 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I-----~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~s~~ 185 (839)
.+.......... ..... .+..++.++.++.+..+|..+++.+........... ..+.
T Consensus 165 ----------~~W~~~~~~~~~~~~~~~~~~~-----~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 165 ----------VKWTVNLDMPSLSLRGESAPTT-----AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp ----------EEEEEECCC-----CCCCCCEE-----ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred ----------EEEEEeCCCCceeecCCCCcEE-----ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence 222222111100 11111 234677788899999999999988776653211000 0000
Q ss_pred -e-ccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEE
Q 003208 186 -L-WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (839)
Q Consensus 186 -~-~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 263 (839)
. ......+..++.++.++.+..+|.. +++.+.... ......+.
T Consensus 230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~---------------------------------tG~~~w~~~--~~~~~~~~ 274 (376)
T 3q7m_A 230 DVDTTPVVVNGVVFALAYNGNLTALDLR---------------------------------SGQIMWKRE--LGSVNDFI 274 (376)
T ss_dssp CCCCCCEEETTEEEEECTTSCEEEEETT---------------------------------TCCEEEEEC--CCCEEEEE
T ss_pred ccCCCcEEECCEEEEEecCcEEEEEECC---------------------------------CCcEEeecc--CCCCCCce
Confidence 0 0000124567777889999999987 333332222 12233343
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee-ccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEE
Q 003208 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLK 341 (839)
Q Consensus 264 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~ 341 (839)
. ++..++.++.++.+..+|..+++.. - ... .....+......+..++.++.+|.+.++|. +++.+.
T Consensus 275 ~--~~~~l~~~~~~g~l~~~d~~tG~~~-----w-----~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 275 V--DGNRIYLVDQNDRVMALTIDGGVTL-----W-----TQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp E--ETTEEEEEETTCCEEEEETTTCCEE-----E-----EECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred E--ECCEEEEEcCCCeEEEEECCCCcEE-----E-----eecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 3 4667888889999999999887651 1 111 111222333345788999999999999998 888887
Q ss_pred EeecccCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 342 MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 342 ~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
....... .+.+.... .+..|+.++.+|.|..|+
T Consensus 343 ~~~~~~~-~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 343 QQKVDSS-GFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECCTT-CBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred EEecCCC-cceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 7765333 23321111 245788889999999886
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=6.6e-07 Score=95.51 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=143.1
Q ss_pred eEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
.+.+|+++ +++ .++++ ..++.|++||++... ....... ..... ++|+|
T Consensus 132 ~P~~la~d-------~~g----~lyv~d~~~~~I~~id~~~g~---------------~~~~~~~-~~~~~-ia~~~--- 180 (409)
T 3hrp_A 132 YMWGIAAV-------GNN----TVLAYQRDDPRVRLISVDDNK---------------VTTVHPG-FKGGK-PAVTK--- 180 (409)
T ss_dssp CEEEEEEC-------STT----EEEEEETTTTEEEEEETTTTE---------------EEEEEET-CCBCB-CEECT---
T ss_pred CceEEEEe-------CCC----CEEEEecCCCcEEEEECCCCE---------------EEEeecc-CCCCc-eeEec---
Confidence 46777887 777 44444 446899999987422 2222222 22233 88999
Q ss_pred CCcEEEEEeCCC--cEEEEecCCCceEEEE---ecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCC
Q 003208 146 GNRSLAIGCSDN--SIRVWDISNSSIILEV---HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 146 ~~~~las~~~d~--~i~vwd~~~~~~~~~~---~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~ 219 (839)
+++.|+++..++ .|.+++...+.....+ ..........+.+ ++ ++.+++ +..++.|+.|+..
T Consensus 181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav---~p~~g~lyv-~d~~~~I~~~d~~-------- 248 (409)
T 3hrp_A 181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL---DETEEWLYF-VDSNKNFGRFNVK-------- 248 (409)
T ss_dssp TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE---CTTSSEEEE-ECTTCEEEEEETT--------
T ss_pred CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE---eCCCCeEEE-EECCCcEEEEECC--------
Confidence 999888887765 7899998766554443 1111111223333 45 454444 6668899999986
Q ss_pred CCCCCccCCCCCCCceeeEeecccccceeeEE----EecCCCCe-E-EEEEcCC-CCEEEEEeCCCcEEEEEcccCccCC
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR----LVGHEGSI-F-RIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKD 292 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~V-~-~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~ 292 (839)
....... ..++...- . .++|+|+ +..+++-..++.|+.|+......
T Consensus 249 -------------------------~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-- 301 (409)
T 3hrp_A 249 -------------------------TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-- 301 (409)
T ss_dssp -------------------------TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--
T ss_pred -------------------------CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--
Confidence 1211111 11222222 3 9999995 55556666778899998765311
Q ss_pred CCCceeeeceEeecc---------------ccceEEeEEC--CCEEEEEe-CCCeEEEEcC-CCceEEEeecc-------
Q 003208 293 SDSIEEVGSSVLYGH---------------NARVWDCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEH------- 346 (839)
Q Consensus 293 ~~~~~~~~~~~~~~h---------------~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~-~~~~~~~~~~h------- 346 (839)
.+.++ -.....++++ ++++++-. .++.|+.|++ ++. +..+.++
T Consensus 302 ----------~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~ 370 (409)
T 3hrp_A 302 ----------WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQI 370 (409)
T ss_dssp ----------EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCC
T ss_pred ----------EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcC
Confidence 22222 1346788888 56667766 7899999996 554 4445443
Q ss_pred --------cCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 347 --------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 347 --------~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.. ....+++++++.++++-..++.|+.+++
T Consensus 371 ~g~~~~~~~~-~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 371 DGTPLEATFN-YPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSTTTCCBS-SEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCChhceEeC-CceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 12 4789999999888888888888888765
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=1.3e-07 Score=107.81 Aligned_cols=274 Identities=10% Similarity=0.016 Sum_probs=155.0
Q ss_pred ceEEEee-CCeeEEEECCCCeeeeEEeee-cCceEEeEEecccccccCCCccceeeEEEEEc------CcEEEEEEeecc
Q 003208 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNFE 107 (839)
Q Consensus 36 ~~l~~g~-~~~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~------~~~i~iw~~~~~ 107 (839)
..|+.+. ++.|..+|.++|+++.++... .......+..+|. . .++ .+++... ++.|+.+|..++
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~--v--~~~----~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR--V--FKG----KVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE--E--ETT----EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE--E--ECC----EEEEEecccccCCCCEEEEEECCCC
Confidence 3455544 899999999999999888754 2100011111110 0 122 4444432 578888887754
Q ss_pred CCCCCCCCCccccceeeeEecc--------------------------------CCCcceEEEEEeeccCCCcEEEEEeC
Q 003208 108 LSPNSQYQPETCVNLSLVQSLP--------------------------------RLSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------~h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
. .+-.+. +.......+++.| ++.+|+.+..
T Consensus 201 ~---------------~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~---~~~~vy~~~~ 262 (677)
T 1kb0_A 201 E---------------RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA---ELNTMYVGTG 262 (677)
T ss_dssp C---------------EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET---TTTEEEEECC
T ss_pred c---------------EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC---CCCEEEEECC
Confidence 3 111111 1111123577888 8888887765
Q ss_pred CC-------------------cEEEEecCCCceEEEEecCC----------ceeEEEEeeccCCccc---eEEEEeecCC
Q 003208 156 DN-------------------SIRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEA---LRIASGTIYN 203 (839)
Q Consensus 156 d~-------------------~i~vwd~~~~~~~~~~~~~~----------~~~~~s~~~~~~~~~~---~~l~sg~~dg 203 (839)
++ .|..+|..+++.+..++... ...+... ..++ ..++.++.+|
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~-----~~dG~~~~~l~~~~~~G 337 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI-----KIAGKPRKVILHAPKNG 337 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE-----EETTEEEEEEEECCTTS
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec-----ccCCcEeeEEEEECCCC
Confidence 53 59999999999887765321 1222221 1245 6889999999
Q ss_pred eEEEEEeeccccccCCC-CCCCccCCCCCCCceeeEeecccccceeeE------------EE---ecCCCCeEEEEEcCC
Q 003208 204 EIIVWKVDWEHVAPLLN-SPEGNHAHGSSSDFKCFKLQDQQHTAVNLF------------RL---VGHEGSIFRIEWSSC 267 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~h~~~V~~l~~~~~ 267 (839)
.|+++|..+++..-... ... . -..-.+ ....++. .+ .|.... ..++++|+
T Consensus 338 ~l~~lD~~tG~~l~~~~~~~~--------~---~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~dp~ 403 (677)
T 1kb0_A 338 FFFVLDRTNGKFISAKNFVPV--------N---WASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSFNPQ 403 (677)
T ss_dssp EEEEEETTTCCEEEEEESSCC--------S---SEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEEETT
T ss_pred EEEEEECCCCCEecccccccc--------C---cccccC--CCCceeeccccCcCCCccEECcCcccccCC-CCceEcCC
Confidence 99999998655432110 000 0 000000 0011110 00 011111 25778888
Q ss_pred CCEEEEEeCC-------------------------------------------CcEEEEEcccCccCCCCCceeeeceEe
Q 003208 268 GSKLVSVSDD-------------------------------------------RSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 268 ~~~l~s~s~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
...+++...+ +.|..||+.+++.. ..
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----------W~ 472 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----------WS 472 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----------EE
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----------ee
Confidence 8887775432 67888998887641 11
Q ss_pred eccccceEEeEE--CCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEE
Q 003208 305 YGHNARVWDCCL--TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (839)
Q Consensus 305 ~~h~~~v~~~~~--~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t 365 (839)
..+..+++...+ .+..++.++.||.+++||. +|+.+..+....+....-+.+..+|+.++.
T Consensus 473 ~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 473 VEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 222333333333 3788999999999999999 899999887654322234566678864433
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.87 E-value=4.8e-07 Score=103.45 Aligned_cols=289 Identities=8% Similarity=-0.026 Sum_probs=154.6
Q ss_pred eEEEee-CCeeEEEECCCCeeeeEEeee-cCceEEeEEecccccccCCCccceeeEEEEEc------CcEEEEEEeeccC
Q 003208 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNFEL 108 (839)
Q Consensus 37 ~l~~g~-~~~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~------~~~i~iw~~~~~~ 108 (839)
.|+.+. ++.|..+|.++|+++.++... +......+..+|.- .++ .+++..+ ++.|..||..++.
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v----~~g----~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV----VNG----KVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE----ETT----EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE----ECC----EEEEEeCCCccCCCCEEEEEECCCCc
Confidence 455555 999999999999999888753 21111122222100 133 3444322 4778888877543
Q ss_pred CCCCCCCCccccceeeeEecc-------------------------------CCCcceEEEEEeeccCCCcEEEEEeCCC
Q 003208 109 SPNSQYQPETCVNLSLVQSLP-------------------------------RLSHWVFDVCFLKVCNGNRSLAIGCSDN 157 (839)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-------------------------------~h~~~I~~~~~~~~~~~~~~las~~~d~ 157 (839)
++-.+. ++......+++.| +..+++.++.++
T Consensus 195 ---------------~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~---~~~~vy~~~~~g 256 (689)
T 1yiq_A 195 ---------------EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP---ELNLLYIGVGNG 256 (689)
T ss_dssp ---------------EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET---TTTEEEEECCCE
T ss_pred ---------------EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC---CCCEEEEeCCCC
Confidence 111110 1111113577888 888888887765
Q ss_pred -------------------cEEEEecCCCceEEEEecCC----------ceeEEEEeeccCCccc---eEEEEeecCCeE
Q 003208 158 -------------------SIRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEA---LRIASGTIYNEI 205 (839)
Q Consensus 158 -------------------~i~vwd~~~~~~~~~~~~~~----------~~~~~s~~~~~~~~~~---~~l~sg~~dg~i 205 (839)
.|..+|..+++.+-..+... ..++..+. .++ ..++.++.+|.+
T Consensus 257 ~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-----~~G~~~~~v~~~~~~G~l 331 (689)
T 1yiq_A 257 SLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-----IDGKPRKVLMQAPKNGFF 331 (689)
T ss_dssp ESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-----ETTEEEEEEEECCTTSEE
T ss_pred CccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-----cCCcEEEEEEEECCCCeE
Confidence 39999999999987765321 11111221 133 378899999999
Q ss_pred EEEEeeccccccCCC-CCCCccCCCCCCCceeeEeeccc---ccceeeEEEe---cCCCCeEEEEEcCCCCEEEEEeC--
Q 003208 206 IVWKVDWEHVAPLLN-SPEGNHAHGSSSDFKCFKLQDQQ---HTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSD-- 276 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~-- 276 (839)
+++|..+++..-... ....-..........-+..-... ...+...... |.. .-..++++|+...+++...
T Consensus 332 ~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~-~w~~~a~dp~~~~~yv~~~~~ 410 (689)
T 1yiq_A 332 YVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH-DWQPMSYNPDTGLVYIPAHIM 410 (689)
T ss_dssp EEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS-CSSCCEEETTTTEEEEEEEEC
T ss_pred EEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc-CCCcceECCCCCEEEEecccc
Confidence 999998666431100 00000000000000000000000 0000000011 111 1123678887777776532
Q ss_pred -------------------------------------------CCcEEEEEcccCccCCCCCceeeeceEeeccccceEE
Q 003208 277 -------------------------------------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (839)
Q Consensus 277 -------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 313 (839)
++.|+.||+.+++.. .... +..++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~----------W~~~-~~~~~~~ 479 (689)
T 1yiq_A 411 SAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA----------WEVP-YVTIFNG 479 (689)
T ss_dssp CEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE----------EEEE-ESSSCCC
T ss_pred ceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE----------eEcc-CCCCccC
Confidence 367888888877641 1111 1222222
Q ss_pred --eEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEEeC
Q 003208 314 --CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGF 368 (839)
Q Consensus 314 --~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~~ 368 (839)
+.-.+.+++.++.||.++.||. +|+.+.+++...+....-+.|..+|+ ++++.+.
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 2223789999999999999999 89999888765442123466777886 4444433
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.86 E-value=3.5e-07 Score=95.43 Aligned_cols=277 Identities=9% Similarity=-0.004 Sum_probs=147.9
Q ss_pred ceEEeEEecccccccCCCccceeeEEEEE---cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 66 IRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 66 ~~v~~i~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
..+.+|+++ ++| .++++. .++.++||.+..+. -..| |. . .....+|-..+.++++.+
T Consensus 17 ~~p~~va~~-------~~g----~~~v~~~~~~~~~~~l~~~~~g~--~~~~-p~----~--~~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLT-------PDG----RLFLSLHQFYQPEMQVAELTQDG--LIPF-PP----Q--SGNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEEC-------TTS----CEEEEECGGGCCSCSEEEEETTE--EEES-CC----C--CSSCCCCCSCEEEEEECS
T ss_pred CCcceEEEC-------CCC----CEEEEeCCCCCCceEEEEECCCC--eecC-CC----c--ccCcccceeEeeEEEEcC
Confidence 368999999 888 455553 23436777776211 0000 00 0 011234567899999998
Q ss_pred ccCCCcEEEEEeC-----CCcEEEEecCCCceEEEEecCC-----ceeEEEEeeccCCc-cceEEEEee---cCCeEEEE
Q 003208 143 VCNGNRSLAIGCS-----DNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNL-EALRIASGT---IYNEIIVW 208 (839)
Q Consensus 143 ~~~~~~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~-~~~~l~sg~---~dg~i~vw 208 (839)
++.++++-.. ++.|.+||+.+++.+..+..+. ......+.+ ++ ++...++.. .++.|.+|
T Consensus 77 ---~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v---d~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 77 ---NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV---DLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp ---SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE---ETTTTEEEEEECCSGGGCEEEEE
T ss_pred ---CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE---ecCCCEEEEEcCccCCCCeEEEE
Confidence 8876665433 5789999999998777665321 111223333 23 345556655 67899999
Q ss_pred EeeccccccCCCCCCCccCCCCCC--CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSS--DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~ 286 (839)
|+..++............+..... ....+...+. .+.. .-....+..|+|+|+++.|+.+..++. ++|.+.
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~--~g~~----~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQP--DGTV----IRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECT--TSCE----ECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccC--CCce----eceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 987443211110000000000000 0000000000 0000 001134688999999999988877664 455543
Q ss_pred cCccCCC--CCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC
Q 003208 287 AEYWKDS--DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 287 ~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~ 361 (839)
....... ...+........++......++++ +.++++...++.|.+||. +++..............++++.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 2111000 000000001222333445567776 678888888999999999 77654333322222478999999988
Q ss_pred EEEEEeCCCcEEEE
Q 003208 362 LLVTAGFDSAIKVH 375 (839)
Q Consensus 362 ~l~t~~~dg~i~iw 375 (839)
++++.+..+.+.+|
T Consensus 304 l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 304 LYFDCNQLHHSAPL 317 (343)
T ss_dssp EEEEECCGGGSGGG
T ss_pred EEEEeCcccccccc
Confidence 87777655444433
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=6.8e-08 Score=100.42 Aligned_cols=310 Identities=12% Similarity=0.040 Sum_probs=178.2
Q ss_pred cccccCCCceeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccc
Q 003208 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
.+|....+. ....+..+. .+ +.+.+++.++.|..|| .+++.+...... ...+.++... ++|
T Consensus 11 ~~W~~~~~~--~~~~~~~~d--~~----g~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~-------~~g-- 71 (330)
T 3hxj_A 11 IKWEFLIGN--SIDSSPILA--KN----GTIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIG-------KDG-- 71 (330)
T ss_dssp -CCTTTSCE--EECCCCEEC--TT----SCEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEET-------TTT--
T ss_pred EEEEEeCCC--CcccCceEc--cC----CeEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEe-------cCC--
Confidence 467765443 223344454 34 5555444488899999 889887665532 3345667666 565
Q ss_pred eeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC
Q 003208 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (839)
Q Consensus 87 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~ 166 (839)
.+.++ .++ |..+|.. + +.+..+...........+ .+..|..++.++.|..+|..
T Consensus 72 --~l~v~-t~~-l~~~d~~-g---------------~~~~~~~~~~~~~~~~~~-----~~~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 72 --TIYFG-SDK-VYAINPD-G---------------TEKWRFDTKKAIVSDFTI-----FEDILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp --EECCS-SCE-EEEECCC-G---------------GGGGGSCC-----CCEEE-----ETTEEEEECTTSEEEEECTT-
T ss_pred --cEEEe-cCc-EEEECCC-C---------------cEEEEEECCCCcccCceE-----ECCEEEEEecCCEEEEEcCC-
Confidence 44333 334 6666642 1 111122212221222222 23456778888999999998
Q ss_pred CceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
++.......+.. ...++.. .+++. |..++.++.|..+|.. +
T Consensus 126 g~~~~~~~~~~~-~~~~~~~---~~~g~-l~vgt~~~~l~~~d~~----------------------------------g 166 (330)
T 3hxj_A 126 GTEKWRFKTKKA-IYATPIV---SEDGT-IYVGSNDNYLYAINPD----------------------------------G 166 (330)
T ss_dssp SCEEEEEECSSC-CCSCCEE---CTTSC-EEEECTTSEEEEECTT----------------------------------S
T ss_pred CCEEEEEcCCCc-eeeeeEE---cCCCE-EEEEcCCCEEEEECCC----------------------------------C
Confidence 766655543322 1122221 23444 6667778999998865 2
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEe
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG 325 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~ 325 (839)
+....+......+.++...+++... .++ +.|..+| .++.. . .........+.++... +..+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~-----~-----~~~~~~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 167 TEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTE-----K-----WNFYAGYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCE-----E-----EEECCSSCCCSCCEECTTSCEEEEE
T ss_pred CEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcE-----E-----EEEccCCcceeceEECCCCeEEEEc
Confidence 2222333334566677777777644 444 7899999 44433 1 1222233456667776 44777888
Q ss_pred CCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeec
Q 003208 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (839)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (839)
.++.+..++.+++.+..+..... .+.++.+.+++ .|..++.+|.|..+|.++.. ++....
T Consensus 233 ~~~gl~~~~~~g~~~~~~~~~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~------------------~~~~~~ 292 (330)
T 3hxj_A 233 LDGHLYAINPDGTEKWRFKTGKR-IESSPVIGNTD-TIYFGSYDGHLYAINPDGTE------------------KWNFET 292 (330)
T ss_dssp TTTEEEEECTTSCEEEEEECSSC-CCSCCEECTTS-CEEEECTTCEEEEECTTSCE------------------EEEEEC
T ss_pred CCCeEEEECCCCCEeEEeeCCCC-ccccceEcCCC-eEEEecCCCCEEEECCCCcE------------------EEEEEc
Confidence 88889999887777776655443 24455666555 46677888889888864321 112111
Q ss_pred CCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEE
Q 003208 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (839)
Q Consensus 406 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~ 446 (839)
+ ...+.++...+++.+++++.+|.+....
T Consensus 293 ~------------~~~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 293 G------------SWIIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp S------------SCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred C------------CccccceEEcCCCEEEEEcCCCeEEEEe
Confidence 1 1235566667788999999999886543
No 223
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.83 E-value=0.0008 Score=80.69 Aligned_cols=508 Identities=13% Similarity=0.078 Sum_probs=244.0
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceee
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 124 (839)
.|++.+...+..+.......+..|...+.+ .. .++++ .++.+.++.++.+. +..
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n-------~~-----~vvva-~g~~l~~fel~~~~-------------L~~ 546 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN-------SS-----QVVVA-VGRALYYLQIHPQE-------------LRQ 546 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC-------SS-----EEEEE-ETTEEEEEEEETTE-------------EEE
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC-------CC-----EEEEE-ECCEEEEEEeeCCc-------------eee
Confidence 455666554444444443333345555544 21 33333 46788888887422 222
Q ss_pred eEeccCCCcceEEEEEeeccC---CCcEEEEEeC-CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 125 VQSLPRLSHWVFDVCFLKVCN---GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~---~~~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
.... ...+.|.|+++.|... ..+++|.|.. |++|+|+++.+.+.+....-+......++.+... ....+|..|-
T Consensus 547 ~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl 624 (1158)
T 3ei3_A 547 ISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCAL 624 (1158)
T ss_dssp EEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEE
T ss_pred eccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEe
Confidence 2222 2356799999986321 2468999996 9999999998877665433222112222322211 2357888999
Q ss_pred cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003208 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (839)
Q Consensus 201 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i 280 (839)
.||.+.-+.+.... + .+ ... ...+-| ..++.-..+...+..-+-+..++..
T Consensus 625 ~dG~l~~~~~d~~t--------------g-~l------------~d~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~ 675 (1158)
T 3ei3_A 625 GDGALFYFGLNIET--------------G-LL------------SDR-KKVTLG-TQPTVLRTFRSLSTTNVFACSDRPT 675 (1158)
T ss_dssp TTSEEEEEEECTTT--------------C-CE------------EEE-EEEECC-SSCCEEEEEESSSCEEEEEESSSCE
T ss_pred CCCeEEEEEEcCCC--------------C-cc------------ccc-eeEEcC-CCceEEEEEeeCCceeEEEECCCCE
Confidence 99999888765100 0 00 000 011122 2233333333333322222223444
Q ss_pred EEEEcccCccCCCCCceeeeceEeeccccce-EEeEEC----CCEEEEEeCCCeEEEEcC-C--CceEEEeecccCCceE
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARV-WDCCLT----DSFIITAGEDCTCRVWGS-D--GKQLKMIKEHIGRGIW 352 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~----~~~l~s~~~dg~i~vw~~-~--~~~~~~~~~h~~~~i~ 352 (839)
.++.-+. .. .. .- -....+ ....|+ ++-++... ++.++|..+ + .-.++++.-. ..+.
T Consensus 676 liy~~~~-~l------~~----s~-l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~--~Tpr 740 (1158)
T 3ei3_A 676 VIYSSNH-KL------VF----SN-VNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY--ESPR 740 (1158)
T ss_dssp EEEESSS-SE------EE----EE-BSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS--SEEE
T ss_pred EEEEcCC-ce------EE----ec-cChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC--CCce
Confidence 4443222 11 10 00 001112 233354 45555444 456888876 2 2223333322 2578
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCcCcc--C----c-------CCC-------CcccccCCCcceEE--eecCCCcc
Q 003208 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG--S----L-------ESH-------PEAKEFNGRTEIFS--IKIPNFSE 410 (839)
Q Consensus 353 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~----~-------~~~-------~~~~~~~~~~~~~~--~~~~~~~~ 410 (839)
.++++|+.+.++.+..+. ..++..+.... . . .+. .....+........ +-.|...+
T Consensus 741 ri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 741 KICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred EEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 999999888766655432 12222110000 0 0 000 00000001011111 11222222
Q ss_pred ceeec-cCCCcceEEEEE---ecC--CeEEEEe----------ccceEEEEEecCCCCceeEEEeeecCCCceEEeeecC
Q 003208 411 QIRLT-DSKSEYVRCLHL---TSE--DTLYIAT----------NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (839)
Q Consensus 411 ~~~~~-~~~~~~v~~~~~---~~~--~~~~~~~----------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 474 (839)
.+... -..++.+.+++. ..+ ..++++| ..|.++.+++.+ .+.+.+.+....++++++....
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~~ 895 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEFN 895 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEET
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeeeC
Confidence 11111 122344555543 322 3567776 457888887762 3455666666678888877643
Q ss_pred CCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecC
Q 003208 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (839)
Q Consensus 475 ~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~ 554 (839)
+ .+++.. ..+|++|++...+.. ......... +.. ......+.+++.|+.-..|.++..+.
T Consensus 896 g---------~Lla~i--g~~l~vy~l~~~~~L---~~~~~~~~~----i~~--~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 896 G---------KLLASI--NSTVRLYEWTTEKEL---RTECNHYNN----IMA--LYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp T---------EEEEEE--TTEEEEEEECTTSCE---EEEEEECCC----SCE--EEEEEETTEEEEEESSBCEEEEEEET
T ss_pred C---------EEEEEc--CCEEEEEECCCCceE---EEEeecccc----EEE--EEEeccCCEEEEEEhhheEEEEEEEc
Confidence 2 344433 368999999654311 111111100 000 11222356778887777777776553
Q ss_pred CCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEecccccccCCCccceeecCcceeeecc
Q 003208 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGA 634 (839)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (839)
... .+...+ ...+...++++++-.++ .++.++.+|+|.++..+....... ...++.....|
T Consensus 956 ~~~----------~L~~~a--~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~---~~~~L~~~~~f--- 1016 (1158)
T 3ei3_A 956 MEG----------NFEEIA--RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDE---ERQHLQEVGLF--- 1016 (1158)
T ss_dssp TTT----------EEEEEE--ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTT---GGGBEEEEEEE---
T ss_pred CCC----------eEEEEE--eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCcc---ccceeeeEEEE---
Confidence 221 111111 12345668888887654 566799999999998876322111 11233333333
Q ss_pred cCCCceeEEEEEeccC---------CceEEEeecCcCcEEEEE
Q 003208 635 HGISTVSTLSVAKLRS---------NQTEIRSTGGDGCICYLE 668 (839)
Q Consensus 635 h~~~~Vt~i~~~~~~~---------~~~~l~s~~~Dg~i~iw~ 668 (839)
|-.+.|+++.-....+ ....++-++.||.|-+.-
T Consensus 1017 hlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1017 HLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp ECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred eCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 2236788886311101 134466777777776653
No 224
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.81 E-value=4e-06 Score=85.41 Aligned_cols=217 Identities=8% Similarity=0.057 Sum_probs=134.7
Q ss_pred EEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEE
Q 003208 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 100 (839)
+..|+ ++ ++.++++.. ++.|+.||..+++. ..+.. ...+.+++++ ++| .++++. +..|.
T Consensus 17 gp~w~--~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~--~~~~~~i~~~-------~dG----~l~v~~-~~~l~ 76 (297)
T 3g4e_A 17 SPVWE--EV---SNSLLFVDIPAKKVCRWDSFTKQV-QRVTM--DAPVSSVALR-------QSG----GYVATI-GTKFC 76 (297)
T ss_dssp EEEEE--TT---TTEEEEEETTTTEEEEEETTTCCE-EEEEC--SSCEEEEEEB-------TTS----SEEEEE-TTEEE
T ss_pred CCeEE--CC---CCEEEEEECCCCEEEEEECCCCcE-EEEeC--CCceEEEEEC-------CCC----CEEEEE-CCeEE
Confidence 66788 75 356666665 78999999988765 33332 3368999999 887 544444 67888
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEeccC--CCcceEEEEEeeccCCCcEEEEEeCC---------CcEEEEecCC-Cc
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSD---------NSIRVWDISN-SS 168 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~~~~~~~~~las~~~d---------~~i~vwd~~~-~~ 168 (839)
+||.+... .+.+..... ....++++++.| ++.++++.... ..-.||.+.. ++
T Consensus 77 ~~d~~~g~-------------~~~~~~~~~~~~~~~~~di~~d~---dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 77 ALNWKEQS-------------AVVLATVDNDKKNNRFNDGKVDP---AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp EEETTTTE-------------EEEEEECCTTCSSEEEEEEEECT---TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred EEECCCCc-------------EEEEEecCCCCCCCCCCCEEECC---CCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 99876432 233332211 234588999999 99876654321 2345555543 33
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEE-EEeecCCeEEEEEee--ccccccCCCCCCCccCCCCCCCceeeEeeccccc
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVD--WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l-~sg~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (839)
......... ....+.+ ++++..| ++.+.++.|.+|++. .+... .
T Consensus 141 ~~~~~~~~~--~pngi~~---spdg~~lyv~~~~~~~i~~~~~d~~~G~~~----------------------------~ 187 (297)
T 3g4e_A 141 VKKYFDQVD--ISNGLDW---SLDHKIFYYIDSLSYSVDAFDYDLQTGQIS----------------------------N 187 (297)
T ss_dssp EEEEEEEES--BEEEEEE---CTTSCEEEEEEGGGTEEEEEEECTTTCCEE----------------------------E
T ss_pred EEEEeeccc--cccceEE---cCCCCEEEEecCCCCcEEEEeccCCCCccc----------------------------C
Confidence 222211111 1223444 5777655 556668899999974 11000 1
Q ss_pred ceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 246 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
.+.+..+..+.+.+.+++++++|+..++....+.|..||..+++. .. .+..+...+++++|.
T Consensus 188 ~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~-----~~-----~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 188 RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR-----LQ-----TVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-----EE-----EEECSSSBEEEEEEE
T ss_pred cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-----EE-----EEECCCCCceEEEEe
Confidence 222333444556788999999998888887888899999986654 22 444455678999997
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.79 E-value=1.8e-05 Score=81.66 Aligned_cols=227 Identities=9% Similarity=-0.046 Sum_probs=136.3
Q ss_pred EEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCC
Q 003208 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (839)
Q Consensus 68 v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (839)
..+..|+ |+++ .++.+. .++.|.+|+.+... .. .+. +...+.++++.| +
T Consensus 51 ~egp~~~-------~~~~---~l~~~d~~~~~i~~~d~~~~~-------------~~---~~~-~~~~v~~i~~~~---d 100 (326)
T 2ghs_A 51 GEGPTFD-------PASG---TAWWFNILERELHELHLASGR-------------KT---VHA-LPFMGSALAKIS---D 100 (326)
T ss_dssp EEEEEEE-------TTTT---EEEEEEGGGTEEEEEETTTTE-------------EE---EEE-CSSCEEEEEEEE---T
T ss_pred CcCCeEe-------CCCC---EEEEEECCCCEEEEEECCCCc-------------EE---EEE-CCCcceEEEEeC---C
Confidence 4567788 6643 444444 46889999876422 11 111 235799999999 8
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecC---CceeEEEEeeccCCccceEEEEeecC----CeEEEEEeeccccccCC
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLL 219 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~l~sg~~d----g~i~vw~~~~~~~~~~~ 219 (839)
+.++++. . ..|.+||..+++........ ....+..+.+ ++++.++++...+ +...||.+.
T Consensus 101 g~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~v~~~~~~~~~~~~~l~~~~-------- 167 (326)
T 2ghs_A 101 SKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRM---HPSGALWIGTMGRKAETGAGSIYHVA-------- 167 (326)
T ss_dssp TEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEE---CTTSCEEEEEEETTCCTTCEEEEEEE--------
T ss_pred CeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE---CCCCCEEEEeCCCcCCCCceEEEEEe--------
Confidence 8877654 3 45999999887654332211 1223445554 5677766544321 223344433
Q ss_pred CCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcc--cC-ccCCCCC
Q 003208 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVR--AE-YWKDSDS 295 (839)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~d~~i~iwd~~--~~-~~~~~~~ 295 (839)
.++.. .+..+......++|+|+++.++.+ +.++.|.+|++. ++ ... .
T Consensus 168 -------------------------~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---~ 218 (326)
T 2ghs_A 168 -------------------------KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---K 218 (326)
T ss_dssp -------------------------TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---C
T ss_pred -------------------------CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---C
Confidence 11111 122233457789999999877554 557899999986 33 220 0
Q ss_pred ceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEc-cCCCEEEEEeCC
Q 003208 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFD 369 (839)
Q Consensus 296 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~-~~~~~l~t~~~d 369 (839)
.+.+ ..+......+..+++. +++.++...++.|.+|+.+++.+..+..+.. .+.+++|. +++..|+.++..
T Consensus 219 ~~~~--~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 219 AEVF--IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEE--EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ceEE--EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 0111 1222233456678887 5666666667899999998888777776655 58999998 887766555543
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.78 E-value=1.3e-06 Score=89.55 Aligned_cols=227 Identities=12% Similarity=-0.002 Sum_probs=135.5
Q ss_pred eEEeEEecccccccCCCccceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccC
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (839)
...+..|+ |+|+ .++.+. .++.|..|+.. + + ...+..+...+.++++.+
T Consensus 46 ~~egp~~~-------~~g~---~l~~~d~~~~~i~~~~~~-g---------------~-~~~~~~~~~~~~gl~~d~--- 95 (305)
T 3dr2_A 46 WSEGPAWW-------EAQR---TLVWSDLVGRRVLGWRED-G---------------T-VDVLLDATAFTNGNAVDA--- 95 (305)
T ss_dssp SEEEEEEE-------GGGT---EEEEEETTTTEEEEEETT-S---------------C-EEEEEESCSCEEEEEECT---
T ss_pred CccCCeEe-------CCCC---EEEEEECCCCEEEEEeCC-C---------------C-EEEEeCCCCccceeeECC---
Confidence 46788888 7773 344444 46888888763 1 1 123334556789999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCc---eeEEEEeeccCCccceEEEE----eec-------------CCeE
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPER---CLLYSMKLWGDNLEALRIAS----GTI-------------YNEI 205 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~s----g~~-------------dg~i 205 (839)
+++++++...++.|.+|+.. ++.......... .....+.+ ++++.+.++ |+. .+.|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~---d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV---ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE---CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE---CCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 99876655556789999985 443222111110 00112222 466776665 321 1344
Q ss_pred EEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC------Cc
Q 003208 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD------RS 279 (839)
Q Consensus 206 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------~~ 279 (839)
..++.. .++... +. .......++|+|+++.|+.+... +.
T Consensus 172 ~~~d~~---------------------------------~g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 172 YRLPPD---------------------------------GSPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp EEECSS---------------------------------SCCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred EEEcCC---------------------------------CCcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 444443 222211 22 33567889999999988777665 68
Q ss_pred EEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEc
Q 003208 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~ 357 (839)
|+.|++..... .. .. .........+..+++. ++ +..+..+ .|.+|+.+++.+..+..+. .+.+++|.
T Consensus 217 i~~~~~~~~~l-----~~-~~-~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g~~~~~~~~~~--~~~~~~f~ 285 (305)
T 3dr2_A 217 ITAFAWRDGAL-----HD-RR-HFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDGQLLGHIPTPG--TASNCTFD 285 (305)
T ss_dssp EEEEEEETTEE-----EE-EE-EEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTTSCEEEEEECSS--CCCEEEEC
T ss_pred EEEEEecCCCc-----cC-Ce-EEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCCCCEEEEEECCC--ceeEEEEe
Confidence 99999875421 00 00 0111122334456666 45 4444444 4999999888888887655 37889999
Q ss_pred cCCCEEEEEeCCCcEE
Q 003208 358 SLSSLLVTAGFDSAIK 373 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~ 373 (839)
++++.|+.++.++..+
T Consensus 286 ~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWM 301 (305)
T ss_dssp TTSCEEEEEETTEEEE
T ss_pred CCCCEEEEEcCCeEEE
Confidence 9988888888764433
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.76 E-value=1.2e-06 Score=92.55 Aligned_cols=267 Identities=11% Similarity=0.061 Sum_probs=160.7
Q ss_pred cCccccccCCCceeeee-----eEEEEecCCCCCCCcceEEEee-----------CCeeEEEECCCCeeeeEEeee----
Q 003208 4 KDLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF---- 63 (839)
Q Consensus 4 ~~i~~w~~~~~~~~~~V-----t~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~~~~~~~~~~~~---- 63 (839)
++|.+.|..+.+..+.| ..++++ || +++|+++. ++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~Pgia~S--pD----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLPHPVAA--ED----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEECCCCEEEEEEECCCCCceEEC--CC----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 68889999887733322 289999 99 66665543 568999999999999988753
Q ss_pred --cCceEEeEEecccccccCCCccceeeEEEEE-c-CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEE
Q 003208 64 --HGIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (839)
Q Consensus 64 --~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (839)
.+...+.+.++ |||+ .++++. . ++.|.+.|+.+ .+.+..+..- + +..
T Consensus 173 ~~~g~~P~~~~~s-------pDGk---~lyV~n~~~~~~VsVID~~t---------------~kvv~~I~v~-g---~~~ 223 (426)
T 3c75_H 173 FLVGTYQWMNALT-------PDNK---NLLFYQFSPAPAVGVVDLEG---------------KTFDRMLDVP-D---CYH 223 (426)
T ss_dssp CCBSCCGGGSEEC-------TTSS---EEEEEECSSSCEEEEEETTT---------------TEEEEEEECC-S---EEE
T ss_pred cccCCCcceEEEc-------CCCC---EEEEEecCCCCeEEEEECCC---------------CeEEEEEEcC-C---cee
Confidence 12346788999 9985 455544 3 58999999986 3444444321 1 123
Q ss_pred EeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe----cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccc
Q 003208 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (839)
Q Consensus 140 ~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~ 215 (839)
..|. ....+++.+.||.+.+.+..+++...... .........+.+ .+++..++..+..+.|.+.|......
T Consensus 224 ~~p~--g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~---~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 224 IFPA--SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF---SLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp EEEE--ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE---CTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred eccC--CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee---cCCCCEEEEEeCCCcEEEEeccCCce
Confidence 3441 22455666778888888886555543211 111110001111 45566666656778999999862110
Q ss_pred ccCCCCCCCccCCCCCCCceeeEeecccc-cceeeEEEecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEE
Q 003208 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQH-TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIWE 284 (839)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------d~~i~iwd 284 (839)
.. +..|.... ......... .....++++|++++++.... ++.|.+.|
T Consensus 299 ~v-------------------~~~~~~~~~~~i~~g~~p---~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 299 TF-------------------RAPIEALTEAERADDWRP---GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EE-------------------CCCEESSCTTTGGGTEEE---CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EE-------------------eeeeeecccccccccccc---CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 00 00000000 000000011 11223688999888777642 35799999
Q ss_pred cccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEe-CCCeEEEEcC-CCceEEEe
Q 003208 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~-~dg~i~vw~~-~~~~~~~~ 343 (839)
..+.+. +..+ . -....+.+.|+ ++ ++++.. .++.|.++|. +++.+.++
T Consensus 357 ~~T~kv-----v~~I-----~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETGER-----INKI-----E-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTCCE-----EEEE-----E-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCeE-----EEEE-----E-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 988765 3322 1 12257888998 56 788777 5999999999 88888886
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.74 E-value=6.1e-07 Score=93.15 Aligned_cols=253 Identities=8% Similarity=-0.133 Sum_probs=152.9
Q ss_pred eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE----------cCcEEEEEEeeccCCCCCCC
Q 003208 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 45 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~----------~~~~i~iw~~~~~~~~~~~~ 114 (839)
.|.++|..+++.+.++..... + ++.++ ||++ .++++. .++.|.+||+.+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~s-------pDg~---~lyVan~~~~r~~~G~~~~~VsviD~~T-------- 105 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAG-------HSGS---DFALASTSFARSAKGKRTDYVEVFDPVT-------- 105 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEEC-------TTSS---CEEEEEEEETTTTSSSEEEEEEEECTTT--------
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEEC-------CCCC---EEEEEcccccccccCCCCCEEEEEECCC--------
Confidence 888999999999999997654 4 79999 9985 444443 268999999986
Q ss_pred CCccccceeeeEeccCC-------CcceEEEEEeeccCCCcEEEEEeC--CCcEEE--EecCCCceEEEEecCCceeEEE
Q 003208 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--DNSIRV--WDISNSSIILEVHSPERCLLYS 183 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~las~~~--d~~i~v--wd~~~~~~~~~~~~~~~~~~~s 183 (839)
++.+.++... ......++++| ++++|+++.. ++.|.+ +|..+ +.++..+. +....
T Consensus 106 -------~~vv~~I~v~~~~~~~~g~~P~~ia~Sp---DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~ 171 (368)
T 1mda_H 106 -------FLPIADIELPDAPRFSVGPRVHIIGNCA---SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIH 171 (368)
T ss_dssp -------CCEEEEEEETTSCSCCBSCCTTSEEECT---TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCE
T ss_pred -------CCEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEc
Confidence 4455554322 12346789999 9999988864 467888 99877 45554322 11100
Q ss_pred EeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE----EEecCCCCe
Q 003208 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF----RLVGHEGSI 259 (839)
Q Consensus 184 ~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~V 259 (839)
......+++.+.||.+.+.++...... .++... .+.-...+.
T Consensus 172 ------p~g~~~~~~~~~dg~~~~vd~~~~~~~----------------------------~~~v~~~~t~~i~vg~~P~ 217 (368)
T 1mda_H 172 ------PGAAATHYLGSCPASLAASDLAAAPAA----------------------------AGIVGAQCTGAQNCSSQAA 217 (368)
T ss_dssp ------EEETTEEECCCCTTSCEEEECCSSCCC----------------------------CEECCCCSCTTSCBCSCCE
T ss_pred ------cCCCeEEEEEcCCCCEEEEECcccccc----------------------------CCeEEEEeeeeeeCCCCcc
Confidence 112234455667888888887620000 011100 001112232
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee-----cc---ccceEEeEEC--CCEEEEEeC---
Q 003208 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----GH---NARVWDCCLT--DSFIITAGE--- 326 (839)
Q Consensus 260 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~h---~~~v~~~~~~--~~~l~s~~~--- 326 (839)
. .+++..++..+. +.+.+.|...... +.+....+. .+ ......++++ ++.++.+..
T Consensus 218 ---~-~~~~~~~~~vs~-~~V~viD~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAVA-SSILQGDIPAAGA------TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp ---E-ETTTTEEEECBS-SCCEEEECCSSCC------EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred ---c-cccCCEEEEEcC-CEEEEEECCCCcc------eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 3 556666666666 8899999865321 111100000 00 0111114565 455554432
Q ss_pred ------CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCC-EEEEEe-CCCcEEEEecCC
Q 003208 327 ------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (839)
Q Consensus 327 ------dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~-~l~t~~-~dg~i~iw~~~~ 379 (839)
++.+.++|. +.+.+.++.... ..+.++++||++ ++++.. .++.|.++|+..
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 235669999 788888876554 378999999997 567777 599999999955
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.72 E-value=2e-06 Score=98.24 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=39.9
Q ss_pred CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|.|+.||+ +|+.+.++..+. ++..-.+...+.+++.|+.||.++.||.++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEEEEECCC
Confidence 478999999 888888876554 244445666778999999999999999854
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=2.8e-06 Score=96.83 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=39.5
Q ss_pred CeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 328 g~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
|.|..||+ +++.+.++... . +++...+...+.+++.++.||.+++||.++
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-S-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-S-SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cEEEEEeCCCCcEEeecCCC-C-CCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 78999999 78888777643 2 355556667788889999999999999854
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.69 E-value=5.4e-07 Score=93.52 Aligned_cols=278 Identities=9% Similarity=-0.046 Sum_probs=163.2
Q ss_pred CcCccccccCCCc-------eeeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecc
Q 003208 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (839)
Q Consensus 3 d~~i~~w~~~~~~-------~~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 75 (839)
++.+..|| .+++ ....+.++.+. ++ +. +..+.++ |..||. +|+.+..+..... ......+.
T Consensus 39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~--~~----g~-l~v~t~~-l~~~d~-~g~~~~~~~~~~~-~~~~~~~~- 106 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIG--KD----GT-IYFGSDK-VYAINP-DGTEKWRFDTKKA-IVSDFTIF- 106 (330)
T ss_dssp TTTTEEEC-TTSCEEESSCGGGEEEECCEET--TT----TE-ECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE-
T ss_pred CCEEEEEC-CCCcEEEEEecCCCcccceEEe--cC----Cc-EEEecCc-EEEECC-CCcEEEEEECCCC-cccCceEE-
Confidence 55667777 5554 12335666665 55 44 4445544 999986 6766555443221 12222222
Q ss_pred cccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeC
Q 003208 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
++ .+.+...++.|..++.. +. .......+...+.++...+ ++. |..++.
T Consensus 107 -------~~----~l~v~t~~~~l~~~d~~-g~---------------~~~~~~~~~~~~~~~~~~~---~g~-l~vgt~ 155 (330)
T 3hxj_A 107 -------ED----ILYVTSMDGHLYAINTD-GT---------------EKWRFKTKKAIYATPIVSE---DGT-IYVGSN 155 (330)
T ss_dssp -------TT----EEEEECTTSEEEEECTT-SC---------------EEEEEECSSCCCSCCEECT---TSC-EEEECT
T ss_pred -------CC----EEEEEecCCEEEEEcCC-CC---------------EEEEEcCCCceeeeeEEcC---CCE-EEEEcC
Confidence 33 55555567888888765 22 2222223334455666655 555 566777
Q ss_pred CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 156 d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
++.|..+|.. ++.+.....+.. .+.++.. ..++.+. .++ +.|..+| .
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~---d~~g~l~-v~t--~~l~~~d-~------------------------ 202 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDA-ITSAASI---GKDGTIY-FGS--DKVYAIN-P------------------------ 202 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSC-CCSCCEE---CTTCCEE-EES--SSEEEEC-T------------------------
T ss_pred CCEEEEECCC-CCEeEEEecCCC-ceeeeEE---cCCCEEE-EEe--CEEEEEC-C------------------------
Confidence 8999999998 776665543321 1222222 2445444 444 8888888 4
Q ss_pred eeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeE
Q 003208 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 315 (839)
.++...........+.++...+++. |..++.++.+..+|...... . ........+..+.
T Consensus 203 ---------~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~------~-----~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 203 ---------DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTEK------W-----RFKTGKRIESSPV 261 (330)
T ss_dssp ---------TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCEE------E-----EEECSSCCCSCCE
T ss_pred ---------CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCCEe------E-----EeeCCCCccccce
Confidence 3333444444456688888888774 66677778888887533221 1 2222222233344
Q ss_pred EC-CCEEEEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 316 LT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 316 ~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.. +..+..++.+|.+..+|.+++.+..+..... .+.++..++++. |..++.+|.+++...+.
T Consensus 262 ~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~-~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 262 IGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSW-IIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTSCEEEECTTCEEEEECTTSCEEEEEECSSC-CCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred EcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCc-cccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 55 6778888889899999987777776655444 466777777776 56688999999887643
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.69 E-value=2.4e-06 Score=98.41 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=141.8
Q ss_pred eeeeeeEEEEecCCCCCCCcceEEEee--C----CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceee
Q 003208 16 YLGEISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (839)
Q Consensus 16 ~~~~Vt~l~f~~~~~~~~~~~~l~~g~--~----~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 89 (839)
+...+..++|| || +++|+-+. + ..|+|||+++|+.+... ........++|+ ||+ .
T Consensus 127 ~~~~l~~~~~S--pD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws--------Dg~---~ 187 (693)
T 3iuj_A 127 GTTALDQLSFS--RD----GRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL--------GNE---G 187 (693)
T ss_dssp SCCEEEEEEEC--TT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE--------TTT---E
T ss_pred CcEEEEEEEEC--CC----CCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe--------CCC---E
Confidence 44568889999 99 77666432 1 57999999999865431 111112455665 332 4
Q ss_pred EEEEEcC-------------cEEEEEEeeccCCCCCCCCCccccceeeeEeccC-CCcceEEEEEeeccCCCcEEEEEeC
Q 003208 90 EVALFGE-------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 90 ~l~~~~~-------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
++.+..+ ..|++|++.+... .-.++..... |...+..+.++| ++++|+....
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----------~~~~v~~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~ 253 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-----------DDRLVFGAIPAQHHRYVGATVTE---DDRFLLISAA 253 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGG-----------GCEEEESCSGGGCCSEEEEEECT---TSCEEEEEEE
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcc-----------cceEEEecCCCCCeEEEEEEEcC---CCCEEEEEEc
Confidence 4444443 3588888765330 0234555555 666788999999 9998754432
Q ss_pred ----CCcEEEEecCCCc-eEEEEecCCceeEEEEeeccCCccc-eEEEEeecC---CeEEEEEeeccccccCCCCCCCcc
Q 003208 156 ----DNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 156 ----d~~i~vwd~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~-~~l~sg~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
++.|.++|+.++. ....+..+.......+ ++++ .+++....+ +.|..+++..+
T Consensus 254 ~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~-----~~~g~~l~~~t~~~~~~~~l~~~d~~~~------------- 315 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLV-----DNKGSTLYLLTNRDAPNRRLVTVDAANP------------- 315 (693)
T ss_dssp SSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEETTSC-------------
T ss_pred cCCCCcEEEEEECCCCCCceEEEeCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCCCC-------------
Confidence 3589999997763 3444444433222221 1333 344444333 67888887611
Q ss_pred CCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcccCccCCCCCceeeeceE
Q 003208 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGSSV 303 (839)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~ 303 (839)
.......+..|...+. .|++++++|+....++ .|++|++..... +. .
T Consensus 316 ------------------~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~------~~----l 365 (693)
T 3iuj_A 316 ------------------GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV------RE----V 365 (693)
T ss_dssp ------------------CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE------EE----E
T ss_pred ------------------CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee------EE----e
Confidence 1111234556666665 8899998887766544 688898875432 11 1
Q ss_pred eeccccceEEeEEC--CC-EEEEEeCC---CeEEEEcCCCceEEEee
Q 003208 304 LYGHNARVWDCCLT--DS-FIITAGED---CTCRVWGSDGKQLKMIK 344 (839)
Q Consensus 304 ~~~h~~~v~~~~~~--~~-~l~s~~~d---g~i~vw~~~~~~~~~~~ 344 (839)
.......+..+.++ +. ++++.+.. +++..||+.+.....+.
T Consensus 366 ~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 366 ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 12233455566655 33 34443321 78888888433333343
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=1.6e-08 Score=106.54 Aligned_cols=199 Identities=10% Similarity=-0.031 Sum_probs=106.9
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.+++.+.++.|+.||..++ +.+..+.. +.+.+..+.+ ++..+++++.|+.|+.||..+++
T Consensus 11 ~v~~gs~dg~v~a~d~~tG---------------~~~W~~~~--~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTG---------------SIKWTLKE--DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp EEEEEETTSEEEEEETTTC---------------CEEEEEEC--CCSCCCC--------CCEEECTTTCCEEEC-----C
T ss_pred EEEEEcCCCEEEEEECCCC---------------CEEEEecC--CCceecceEc---CCCEEEEeCCCCEEEEEECCCCc
Confidence 6777778999999998763 34444443 3455544555 77778887899999999999888
Q ss_pred eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee
Q 003208 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (839)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (839)
.+.....+....+.+.-. -..+..|++|+.++.|+.||.. +++.
T Consensus 71 ~~w~~~~~~~~~~~~sp~---~~~~~~v~~g~~dg~v~a~D~~---------------------------------tG~~ 114 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPC---RSSDGILYMGKKQDIWYVIDLL---------------------------------TGEK 114 (369)
T ss_dssp CSEECSCCHHHHHTTCSC---C-----CCCCEEEEEEEEECCC-------------------------------------
T ss_pred eeeeeeccCccccccCce---EecCCEEEEEeCCCEEEEEECC---------------------------------CCcE
Confidence 766654332111100000 0135578888899999999998 4444
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEE
Q 003208 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIIT 323 (839)
Q Consensus 249 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s 323 (839)
+..+..+. ...++|++..+++++.|+.|+.||..+++.. -.. ..... ....+.+ ..++.
T Consensus 115 ~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-----W~~---~~~~~----~~~~~~~~~~~~~~v~~ 178 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-----WNA---TYFDY----AASLPEDDVDYKMSHFV 178 (369)
T ss_dssp ----------------------EEEEEEEEEEECCCSSSSSCC-----CEE---EEEEE----CCBCCCCCTTCCCCEEE
T ss_pred EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE-----EeE---ecccc----cCccccCCccccceEEE
Confidence 44444332 2345678889999999999999999887652 111 11111 1222332 67888
Q ss_pred EeCCCeEEEEcC-CCceEEEeecccCCceEE-EEEccCCC
Q 003208 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR-CLYDSLSS 361 (839)
Q Consensus 324 ~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~-~~~~~~~~ 361 (839)
++.||.++.||. +|+.+.+.... . ++.. ..+++++.
T Consensus 179 ~~~dg~v~a~d~~tG~~~W~~~~~-~-pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 179 SNGDGLVVTVDSESGDVLWIQNYA-S-PVVAFYVWQREGL 216 (369)
T ss_dssp EETSCEEEEECTTTCCEEEEEECS-S-CEEEEEECTTSSC
T ss_pred ECCCCEEEEEECCCCcEEEEecCC-C-ceEEEEEecCCce
Confidence 999999999999 88887776633 2 3443 33445553
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.65 E-value=3e-05 Score=79.94 Aligned_cols=215 Identities=11% Similarity=-0.023 Sum_probs=128.8
Q ss_pred eEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i 99 (839)
.+.+|+ |+ ++.+++++. ++.|.+||.++++.. .+.. ...+.+++++ ++| .++++.. ..|
T Consensus 52 egp~~~--~~---~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~--~~~v~~i~~~-------~dg----~l~v~~~-~gl 111 (326)
T 2ghs_A 52 EGPTFD--PA---SGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKI-------SDS----KQLIASD-DGL 111 (326)
T ss_dssp EEEEEE--TT---TTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEE-------ETT----EEEEEET-TEE
T ss_pred cCCeEe--CC---CCEEEEEECCCCEEEEEECCCCcEE-EEEC--CCcceEEEEe-------CCC----eEEEEEC-CCE
Confidence 466788 86 356666665 789999999887643 3332 2368999998 787 5555554 448
Q ss_pred EEEEeeccCCCCCCCCCccccceeeeEecc-CC-CcceEEEEEeeccCCCcEEEEEeC------CCcEEEEecCCCceEE
Q 003208 100 KLFELNFELSPNSQYQPETCVNLSLVQSLP-RL-SHWVFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIIL 171 (839)
Q Consensus 100 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~I~~~~~~~~~~~~~~las~~~------d~~i~vwd~~~~~~~~ 171 (839)
.+||...+. .+.+.... +. ...+.+++++| ++.++++... .+.|..++ +++...
T Consensus 112 ~~~d~~~g~-------------~~~~~~~~~~~~~~~~~~i~~d~---~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~ 173 (326)
T 2ghs_A 112 FLRDTATGV-------------LTLHAELESDLPGNRSNDGRMHP---SGALWIGTMGRKAETGAGSIYHVA--KGKVTK 173 (326)
T ss_dssp EEEETTTCC-------------EEEEECSSTTCTTEEEEEEEECT---TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE
T ss_pred EEEECCCCc-------------EEEEeeCCCCCCCCCCCCEEECC---CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE
Confidence 888876432 22222221 11 24689999999 8887665432 23455555 444322
Q ss_pred EEecCCceeEEEEeeccCCccceEEE-EeecCCeEEEEEee--cc-ccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVD--WE-HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~dg~i~vw~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
..... .....+.+ ++++..++ +.+.++.|.+|++. .+ ... ..+
T Consensus 174 ~~~~~--~~~~~i~~---s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~----------------------------~~~ 220 (326)
T 2ghs_A 174 LFADI--SIPNSICF---SPDGTTGYFVDTKVNRLMRVPLDARTGLPTG----------------------------KAE 220 (326)
T ss_dssp EEEEE--SSEEEEEE---CTTSCEEEEEETTTCEEEEEEBCTTTCCBSS----------------------------CCE
T ss_pred eeCCC--cccCCeEE---cCCCCEEEEEECCCCEEEEEEcccccCCccc----------------------------Cce
Confidence 21111 11223444 57786554 44557899999975 11 100 111
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 317 (839)
.+..+......+.+++++++|...++...++.|..||.. ++. .. .+..+...+.+++|.
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~-----~~-----~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH-----IA-----RYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE-----EE-----EEECSCSBEEEEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCE-----EE-----EEECCCCCcEEEEEe
Confidence 222233344567889999999877777777889999984 332 12 333445568899986
No 235
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.54 E-value=3.5e-06 Score=97.08 Aligned_cols=200 Identities=8% Similarity=0.029 Sum_probs=119.5
Q ss_pred CCCcceEEEEEeeccCCCcEEEEE-----eCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCC-
Q 003208 130 RLSHWVFDVCFLKVCNGNRSLAIG-----CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN- 203 (839)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg- 203 (839)
+|...+..++|+| ++++||-+ +....|++||+.+++.+.......+ ..++.| + |+..|+.++.+.
T Consensus 126 ~~~~~l~~~~~Sp---Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k--~~~~~W---s-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSR---DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK--FSGISW---L-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECT---TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE--SCCCEE---E-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECC---CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCce--eccEEE---e-CCCEEEEEEecCc
Confidence 4666789999999 99988843 2235799999999986543211110 112233 4 677777776653
Q ss_pred ------------eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec-CCCCeEEEEEcCCCCE
Q 003208 204 ------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSK 270 (839)
Q Consensus 204 ------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~ 270 (839)
.|++|++.++. .....+..... |...+.++.|+|||++
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~-----------------------------~~~~~v~~~~~~~~~~~~~~~~SpDg~~ 247 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQ-----------------------------EDDRLVFGAIPAQHHRYVGATVTEDDRF 247 (693)
T ss_dssp C-------CCCCEEEEEETTSCG-----------------------------GGCEEEESCSGGGCCSEEEEEECTTSCE
T ss_pred ccccccccCCCcEEEEEECCCCc-----------------------------ccceEEEecCCCCCeEEEEEEEcCCCCE
Confidence 37777765110 01122333333 5556789999999998
Q ss_pred EEEEeC----CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeE-ECCCE-EEEEeCC---CeEEEEcC-CCce-
Q 003208 271 LVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-LTDSF-IITAGED---CTCRVWGS-DGKQ- 339 (839)
Q Consensus 271 l~s~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~-l~s~~~d---g~i~vw~~-~~~~- 339 (839)
|+.... +..|+++|+.++... .+ .+..+........ ..+.. ++....+ +.|..+++ .+..
T Consensus 248 l~~~~~~~~~~~~i~~~d~~~~~~~----~~-----~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 248 LLISAANSTSGNRLYVKDLSQENAP----LL-----TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp EEEEEESSSSCCEEEEEETTSTTCC----CE-----EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEEEEccCCCCcEEEEEECCCCCCc----eE-----EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 755432 358999998775320 12 3344444444432 22444 4444443 67889998 3332
Q ss_pred -EEEeecccCCceEEEEEccCCCEEEEEeC-CC--cEEEEecCC
Q 003208 340 -LKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DS--AIKVHQFQA 379 (839)
Q Consensus 340 -~~~~~~h~~~~i~~~~~~~~~~~l~t~~~-dg--~i~iw~~~~ 379 (839)
...+..+... +. .|+++++.|+.... ++ .|++|++++
T Consensus 319 ~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 319 HWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp GCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 2455556553 44 88888887776665 44 678888754
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.53 E-value=1.7e-05 Score=77.47 Aligned_cols=195 Identities=9% Similarity=-0.016 Sum_probs=130.4
Q ss_pred eeEEEEecCCCCCCCcceEEE-ee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 20 ISALCFVHLPSHLSSLPFLLA-GS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~-g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
...|+|+ +| +.+.++ |. ++.|+++|..+++.+.++.........++++. .+- .+++.+.+
T Consensus 23 ~~Gl~~~--~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-------g~~----lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYA--EN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-------NEK----LYQVVWLK 85 (266)
T ss_dssp EEEEEEC--ST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-------TTE----EEEEETTC
T ss_pred cccEEEe--CC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-------CCE----EEEEEecC
Confidence 3589999 87 555444 33 47999999999999998876444334566766 331 66777789
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
+.+.++|.++ ++.+..+..-.. ....+++ ++..|+++..++.|.++|..+.+.+..+...
T Consensus 86 ~~v~viD~~t---------------~~v~~~i~~g~~--~g~glt~---Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 86 NIGFIYDRRT---------------LSNIKNFTHQMK--DGWGLAT---DGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp SEEEEEETTT---------------TEEEEEEECCSS--SCCEEEE---CSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEECCC---------------CcEEEEEECCCC--CeEEEEE---CCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 9999999875 444555432101 1233566 7777777667899999999999988887643
Q ss_pred C--ce--eEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 177 E--RC--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 177 ~--~~--~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
. .. ....+.+. ++.+.+....++.|.+.|+. +++.+..+
T Consensus 146 ~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~---------------------------------tg~V~~~I 188 (266)
T 2iwa_A 146 YNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAK---------------------------------DGTLLGWI 188 (266)
T ss_dssp ETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETT---------------------------------TCCEEEEE
T ss_pred CCCcccccceeEEEE----CCEEEEecCCCCeEEEEECC---------------------------------CCcEEEEE
Confidence 2 11 23444442 45555555567899999988 45555554
Q ss_pred ecC-------------CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcccC
Q 003208 253 VGH-------------EGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAE 288 (839)
Q Consensus 253 ~~h-------------~~~V~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~ 288 (839)
.-. .....+|+|+|+++.++ ++.....+...++...
T Consensus 189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 189 LLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 321 13568999999987654 5556778888887654
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.53 E-value=1.7e-05 Score=81.01 Aligned_cols=225 Identities=10% Similarity=0.045 Sum_probs=132.6
Q ss_pred eeEEEEecCCCCCCCcc-eEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-cC
Q 003208 20 ISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE 96 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~-~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~~ 96 (839)
....+|+ |+ ++ +++++. ++.|..|+. +++ +..+... ...+.+++++ ++| .++++. ++
T Consensus 47 ~egp~~~--~~----g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~-~~~~~gl~~d-------~dG----~l~v~~~~~ 106 (305)
T 3dr2_A 47 SEGPAWW--EA----QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDA-TAFTNGNAVD-------AQQ----RLVHCEHGR 106 (305)
T ss_dssp EEEEEEE--GG----GTEEEEEETTTTEEEEEET-TSC-EEEEEES-CSCEEEEEEC-------TTS----CEEEEETTT
T ss_pred ccCCeEe--CC----CCEEEEEECCCCEEEEEeC-CCC-EEEEeCC-CCccceeeEC-------CCC----CEEEEECCC
Confidence 4578889 88 66 666666 789999997 555 3444433 3358999999 888 455554 46
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeee-EeccCC-CcceEEEEEeeccCCCcEEEE----EeC-------------CC
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLV-QSLPRL-SHWVFDVCFLKVCNGNRSLAI----GCS-------------DN 157 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h-~~~I~~~~~~~~~~~~~~las----~~~-------------d~ 157 (839)
+.|.+|+.+ +. .+.+ ....+. ...+.++++.| ++.+.+| |.. .+
T Consensus 107 ~~v~~~~~~-g~-------------~~~~~~~~~~~~~~~~~~i~~d~---dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 107 RAITRSDAD-GQ-------------AHLLVGRYAGKRLNSPNDLIVAR---DGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp TEEEEECTT-SC-------------EEEEECEETTEECSCCCCEEECT---TSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred CEEEEECCC-CC-------------EEEEEeccCCCccCCCCCEEECC---CCCEEEeCcCCCccccccccccccccCCC
Confidence 788888864 22 1111 111121 13467899999 9988876 321 24
Q ss_pred cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC------CeEEEEEeeccccccCCCCCCCccCCCCC
Q 003208 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (839)
Q Consensus 158 ~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 231 (839)
.|..+|..+++..... ... ....+.+ ++++..|+.+... +.|.+|++.... ..
T Consensus 170 ~v~~~d~~~g~~~~~~-~~~--~p~gl~~---spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-------------- 228 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA-DLD--HPNGLAF---SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH-------------- 228 (305)
T ss_dssp EEEEECSSSCCCEEEE-EES--SEEEEEE---CTTSSEEEEEECCC---CCCEEEEEEEETTE-EE--------------
T ss_pred eEEEEcCCCCcEEEEe-cCC--CCcceEE---cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-cc--------------
Confidence 6777887666543322 111 1223444 6888877666554 789999987111 00
Q ss_pred CCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccce
Q 003208 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (839)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 311 (839)
..+.. .....+.+.+++++++|+ |.++..++ |.+|+...... . .+..+. .+
T Consensus 229 -------------~~~~~--~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~~g~~~------~-----~~~~~~-~~ 279 (305)
T 3dr2_A 229 -------------DRRHF--ASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDSDGQLL------G-----HIPTPG-TA 279 (305)
T ss_dssp -------------EEEEE--ECCSSSCCCSEEECTTSC-EEECCSSE-EEEECTTSCEE------E-----EEECSS-CC
T ss_pred -------------CCeEE--EECCCCCCCeEEECCCCC-EEEecCCc-EEEECCCCCEE------E-----EEECCC-ce
Confidence 01111 111334567789999998 44444554 99999854322 1 222222 57
Q ss_pred EEeEEC--CCEEEEEeCCCeEE
Q 003208 312 WDCCLT--DSFIITAGEDCTCR 331 (839)
Q Consensus 312 ~~~~~~--~~~l~s~~~dg~i~ 331 (839)
.+++|. ++.|+.++.++..+
T Consensus 280 ~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 280 SNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEECTTSCEEEEEETTEEEE
T ss_pred eEEEEeCCCCEEEEEcCCeEEE
Confidence 788886 46677766665443
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.50 E-value=1.7e-05 Score=76.42 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=116.7
Q ss_pred eEEEEecCCCCCCCcceEEEeeCC--eeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGSGS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~~~--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (839)
..|.|+ .+ .-|..+|.+| .|+++|+++|+.+.++.......-.+|++. .+- .+.+.+.++.
T Consensus 46 qGL~~~--~~----~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-------g~~----ly~ltw~~~~ 108 (262)
T 3nol_A 46 EGFFYR--NG----YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-------KDK----IVGLTWKNGL 108 (262)
T ss_dssp EEEEEE--TT----EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-------TTE----EEEEESSSSE
T ss_pred ceEEEE--CC----EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-------CCE----EEEEEeeCCE
Confidence 467777 32 3333344444 999999999999999886543223446665 332 6777788999
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC-
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE- 177 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~- 177 (839)
+.++|.++ ++.+.++.--. ....+.+ ++..|+....++.|.++|..+.+.+.++....
T Consensus 109 v~v~D~~t---------------~~~~~ti~~~~---eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~ 167 (262)
T 3nol_A 109 GFVWNIRN---------------LRQVRSFNYDG---EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH 167 (262)
T ss_dssp EEEEETTT---------------CCEEEEEECSS---CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECEET
T ss_pred EEEEECcc---------------CcEEEEEECCC---CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC
Confidence 99999976 44555544221 2223345 67767666567889999999999988876432
Q ss_pred -ce--eEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec
Q 003208 178 -RC--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (839)
Q Consensus 178 -~~--~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (839)
+. .+..+.+ .++.+.+..-.++.|.+.|.+ +++.+..+.-
T Consensus 168 g~~~~~lNELe~----~~G~lyan~w~~~~I~vIDp~---------------------------------tG~V~~~Id~ 210 (262)
T 3nol_A 168 GEELPELNELEW----VDGEIFANVWQTNKIVRIDPE---------------------------------TGKVTGIIDL 210 (262)
T ss_dssp TEECCCEEEEEE----ETTEEEEEETTSSEEEEECTT---------------------------------TCBEEEEEEC
T ss_pred CccccccceeEE----ECCEEEEEEccCCeEEEEECC---------------------------------CCcEEEEEEC
Confidence 11 1222333 256555555467889999887 3333333321
Q ss_pred ------------CCCCeEEEEEcCCCCEEEEEeCC
Q 003208 255 ------------HEGSIFRIEWSSCGSKLVSVSDD 277 (839)
Q Consensus 255 ------------h~~~V~~l~~~~~~~~l~s~s~d 277 (839)
-.+..++|+|+|+++.|+..+..
T Consensus 211 ~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 211 NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 12456899999999888887763
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.49 E-value=1.5e-05 Score=82.89 Aligned_cols=242 Identities=9% Similarity=0.005 Sum_probs=139.0
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee---CCeeEEEECCCCeeeeEEee------ecCceEEeEEecccccccCCCcccee
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQV------FHGIRLHGISCNFINCTEGSVSTRVT 88 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~---~~~v~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~~~~ 88 (839)
..++.|+++ ++ ++++++.. ++.++||.+.++++. .+.. .+-..+++|+++ ++|
T Consensus 17 ~~p~~va~~--~~----g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-------~~g---- 78 (343)
T 2qe8_A 17 LAPGNITLT--PD----GRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-------GNG---- 78 (343)
T ss_dssp SCEEEEEEC--TT----SCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-------SSS----
T ss_pred CCcceEEEC--CC----CCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-------CCC----
Confidence 457899999 88 78888753 343555655466543 2211 122468999999 887
Q ss_pred eEEEEE-c-----CcEEEEEEeeccCCCCCCCCCccccceeeeEecc------CCCcceEEEEEeeccCCCcEE-EEEe-
Q 003208 89 FEVALF-G-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSL-AIGC- 154 (839)
Q Consensus 89 ~~l~~~-~-----~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~I~~~~~~~~~~~~~~l-as~~- 154 (839)
.++++. + +..|.+||+.+. +.+..+. .+...+..+++.| ++..+ ++..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg---------------~~~~~~~~~~~~~~~~~~~~~v~vd~---~~g~~yvtd~~ 140 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNN---------------QLSRVIYLPPPITLSNSFVNDLAVDL---IHNFVYISDPA 140 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTT---------------EEEEEEECCTTTSCTTCCCCEEEEET---TTTEEEEEECC
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCC---------------eEEEEEECChhhcccccccceEEEec---CCCEEEEEcCc
Confidence 555543 4 478999998753 2222222 2334578999997 65444 5544
Q ss_pred --CCCcEEEEecCCCceEEEEecCCc----------------------------eeEEEEeeccCCccceEEEEeecCCe
Q 003208 155 --SDNSIRVWDISNSSIILEVHSPER----------------------------CLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 155 --~d~~i~vwd~~~~~~~~~~~~~~~----------------------------~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
.++.|.+||+.+++..+.+..+.. .....+.+ ++++..|+.+...+.
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~---s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL---DAENEWLYLSPMHST 217 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE---CTTSCEEEEEESSCS
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe---ccCCCEEEEEeCCCC
Confidence 578999999988876665532100 01233443 567766666655543
Q ss_pred EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceee--EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003208 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL--FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (839)
Q Consensus 205 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~i 282 (839)
++|.+.......... ...+.. ....++.+...+++++++|..+++...++.|.+
T Consensus 218 -~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 218 -SMYRIKSADLSNLQL-----------------------TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGV 273 (343)
T ss_dssp -EEEEEEHHHHTCTTC-----------------------CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEE
T ss_pred -eEEEEEHHHhcCCCC-----------------------ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEE
Confidence 344443110000000 000000 012245556778999999999999989999999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEE
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 331 (839)
||..+++. ..+ ....+...+.+++|. +.++++.+..+.+.
T Consensus 274 ~d~~~G~~------~~~---~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 274 ITSADRAY------KLL---VTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp EETTTTEE------EEE---EECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred EECCCCCE------EEE---EECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 99844332 111 111224567888886 45666665444443
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.46 E-value=0.00021 Score=71.18 Aligned_cols=247 Identities=11% Similarity=-0.007 Sum_probs=138.1
Q ss_pred eEEEeeCCeeEEEECCCCeee-----eEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCC
Q 003208 37 FLLAGSGSQVLLYDLEAGTLI-----RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSP 110 (839)
Q Consensus 37 ~l~~g~~~~v~iwd~~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~ 110 (839)
+|+.+..+.|+.+++...... ..+... ...+++++++ ++++ .++.+ .+.+.|.++++....
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d-------~~~~---~ly~~d~~~~~I~~~~~~g~~-- 69 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFD-------CVDK---VVYWTDISEPSIGRASLHGGE-- 69 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEE-------TTTT---EEEEEETTTTEEEEEESSSCC--
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecCC-CCcEEEEEEe-------cCCC---EEEEEECCCCEEEEEecCCCC--
Confidence 444445558999998754321 112221 2258899998 6542 44444 457899999886421
Q ss_pred CCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccC
Q 003208 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD 189 (839)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~ 189 (839)
....+........++++.| ++..|+ +-...+.|.++++............. .....+.+
T Consensus 70 -------------~~~~~~~~~~~p~~ia~d~---~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~-~~P~~i~v--- 129 (267)
T 1npe_A 70 -------------PTTIIRQDLGSPEGIALDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL-VNPRGIVT--- 129 (267)
T ss_dssp -------------CEEEECTTCCCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SSEEEEEE---
T ss_pred -------------cEEEEECCCCCccEEEEEe---cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC-CCccEEEE---
Confidence 1111222224578999998 765554 44456789999986433222222111 11223333
Q ss_pred Ccc-ceEEEEeec--CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEc
Q 003208 190 NLE-ALRIASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWS 265 (839)
Q Consensus 190 ~~~-~~~l~sg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~ 265 (839)
+++ +.+.++... .+.|..+++. . .....+ .........++++
T Consensus 130 d~~~g~lyv~~~~~~~~~I~~~~~d---------------------------------g-~~~~~~~~~~~~~P~gia~d 175 (267)
T 1npe_A 130 DPVRGNLYWTDWNRDNPKIETSHMD---------------------------------G-TNRRILAQDNLGLPNGLTFD 175 (267)
T ss_dssp ETTTTEEEEEECCSSSCEEEEEETT---------------------------------S-CCCEEEECTTCSCEEEEEEE
T ss_pred eeCCCEEEEEECCCCCcEEEEEecC---------------------------------C-CCcEEEEECCCCCCcEEEEc
Confidence 353 333333322 3677777765 1 111111 1223567899999
Q ss_pred CCCCEEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEe-CCCeEEEEcC-CCceEEE
Q 003208 266 SCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKM 342 (839)
Q Consensus 266 ~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~-~dg~i~vw~~-~~~~~~~ 342 (839)
|++..|+.+ ...+.|..+|+..... .. ...+ ......++..++.++.+. ..+.|.+++. +++.+..
T Consensus 176 ~~~~~lyv~d~~~~~I~~~~~~g~~~------~~----~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 176 AFSSQLCWVDAGTHRAECLNPAQPGR------RK----VLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDT 244 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEE------EE----EEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEecCCCce------EE----EecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEE
Confidence 987766554 4567899999876432 11 1111 123355666655555554 5689999999 6888877
Q ss_pred eecccCCceEEEEEccCCC
Q 003208 343 IKEHIGRGIWRCLYDSLSS 361 (839)
Q Consensus 343 ~~~h~~~~i~~~~~~~~~~ 361 (839)
+........+.+++.|++.
T Consensus 245 i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 245 FHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ECCSSCCCCCCEEEECSCC
T ss_pred EccccccccceeeecCccC
Confidence 7643321256788887763
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.45 E-value=7.6e-05 Score=72.86 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=132.6
Q ss_pred eeeeEeccCCC--cceEEEEEeeccCCCcEEEEEeC--CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 122 ~~~~~~~~~h~--~~I~~~~~~~~~~~~~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
.+.+.++. |. .....++|+| ++.+.++.+. ++.|++.|+.+++.+..+..+.....-.+.+. .+.+.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~----g~~lyv 80 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL----NEKLYQ 80 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred ceEEEEEE-CCCCCCcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe----CCEEEE
Confidence 44555553 43 3468999998 7655555443 67999999999999988764332222223221 223344
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 277 (839)
+.-.++.+.++|.. +.+.+..+..-... ...+++|++.++.+..+
T Consensus 81 ~t~~~~~v~viD~~---------------------------------t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 81 VVWLKNIGFIYDRR---------------------------------TLSNIKNFTHQMKD--GWGLATDGKILYGSDGT 125 (266)
T ss_dssp EETTCSEEEEEETT---------------------------------TTEEEEEEECCSSS--CCEEEECSSSEEEECSS
T ss_pred EEecCCEEEEEECC---------------------------------CCcEEEEEECCCCC--eEEEEECCCEEEEECCC
Confidence 44467899999987 66666666421122 23345678877777788
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeecc-ccceEEeEECCCEEEEEe-CCCeEEEEcC-CCceEEEeeccc-------
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIKEHI------- 347 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~l~s~~-~dg~i~vw~~-~~~~~~~~~~h~------- 347 (839)
+.|.++|..+.+. ...+.. ...+. -..++.+.|.+..++... .++.|.+.|. +++.+..+....
T Consensus 126 ~~l~viD~~t~~v-----~~~I~V-g~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~ 199 (266)
T 2iwa_A 126 SILYEIDPHTFKL-----IKKHNV-KYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLID 199 (266)
T ss_dssp SEEEEECTTTCCE-----EEEEEC-EETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHH
T ss_pred CeEEEEECCCCcE-----EEEEEE-CCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccc
Confidence 9999999988654 332221 11111 113566777655555444 6789999999 888888876421
Q ss_pred -----CCceEEEEEccCCC-EEEEEeCCCcEEEEecCC
Q 003208 348 -----GRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 348 -----~~~i~~~~~~~~~~-~l~t~~~dg~i~iw~~~~ 379 (839)
......|+++|+++ +++++...+.+...++..
T Consensus 200 ~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 200 EGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 01357899999986 555666788888888743
No 242
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=4.7e-05 Score=72.67 Aligned_cols=182 Identities=12% Similarity=0.083 Sum_probs=116.6
Q ss_pred eeEEEEecCCCCCCCcceEEEeeC--CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~--~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
...|.|+ ++ .-|..+|.. +.|+++|+++|+.+.++.......-.++++. .+- .+.+.+.++
T Consensus 23 tqGL~~~--~~----~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-------~~~----ly~ltw~~~ 85 (243)
T 3mbr_X 23 TEGLFYL--RG----HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-------RDR----LIQLTWRNH 85 (243)
T ss_dssp EEEEEEE--TT----EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-------TTE----EEEEESSSS
T ss_pred cccEEEE--CC----EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-------CCE----EEEEEeeCC
Confidence 4578888 43 333333443 5999999999999999886554323456665 331 667778899
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
.+.++|.++ ++.+.++..-... ..+ .+ ++..|+.+..++.|.++|..+.+.+.++....
T Consensus 86 ~v~v~D~~t---------------l~~~~ti~~~~~G-wgl--t~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 86 EGFVYDLAT---------------LTPRARFRYPGEG-WAL--TS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EEEEEETTT---------------TEEEEEEECSSCC-CEE--EE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEEECCc---------------CcEEEEEeCCCCc-eEE--ee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 999999876 4555555422211 233 35 66666666668899999999999988876422
Q ss_pred c----eeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe
Q 003208 178 R----CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (839)
Q Consensus 178 ~----~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (839)
. ..+..+.+ .++.+.+..-.+..|.+.|+. +++.+..+.
T Consensus 145 ~g~~~~~lNeLe~----~~G~lyanvw~s~~I~vIDp~---------------------------------tG~V~~~id 187 (243)
T 3mbr_X 145 GGRPLDNLNELEW----VNGELLANVWLTSRIARIDPA---------------------------------SGKVVAWID 187 (243)
T ss_dssp TTEECCCEEEEEE----ETTEEEEEETTTTEEEEECTT---------------------------------TCBEEEEEE
T ss_pred CCcccccceeeEE----eCCEEEEEECCCCeEEEEECC---------------------------------CCCEEEEEE
Confidence 1 11223333 245544444457788888887 333333322
Q ss_pred -------------cCCCCeEEEEEcCCCCEEEEEeC
Q 003208 254 -------------GHEGSIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 254 -------------~h~~~V~~l~~~~~~~~l~s~s~ 276 (839)
.-.+-.++|+++|+++.|+..+.
T Consensus 188 l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 188 LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 11245688999999888877765
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.42 E-value=1.9e-05 Score=75.94 Aligned_cols=180 Identities=11% Similarity=0.043 Sum_probs=115.6
Q ss_pred eEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEE
Q 003208 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 100 (839)
..|.|+ .+ .-|+.+|.++.|+++|+++|+.+.++ ......-.++++. .+- .+++.+.++.+.
T Consensus 58 qGL~~~--~~----~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-------g~~----Ly~ltw~~~~v~ 119 (268)
T 3nok_A 58 QGLVFH--QG----HFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-------GER----LYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE--TT----EEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-------SSC----EEEEESSSCEEE
T ss_pred ceEEEE--CC----EEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-------CCE----EEEEEccCCEEE
Confidence 467777 33 33333344788999999999999988 4433223456665 332 777788899999
Q ss_pred EEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCc--
Q 003208 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-- 178 (839)
Q Consensus 101 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~-- 178 (839)
+||.++ ++.+.++..-.. =..++ + ++..|+.+..++.|.++|..+.+.+.++.....
T Consensus 120 V~D~~T---------------l~~~~ti~~~~e-GwGLt--~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 120 TWSGMP---------------PQRERTTRYSGE-GWGLC--Y---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ 178 (268)
T ss_dssp EEETTT---------------TEEEEEEECSSC-CCCEE--E---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEECCc---------------CcEEEEEeCCCc-eeEEe--c---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence 999876 445555442211 12333 5 677777766789999999999999888764221
Q ss_pred e--eEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEec--
Q 003208 179 C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-- 254 (839)
Q Consensus 179 ~--~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (839)
. .+..+.+ .++.+.+..-.++.|.+.|.+ +++.+..+.-
T Consensus 179 ~v~~lNeLe~----~dG~lyanvw~s~~I~vIDp~---------------------------------TG~V~~~Idl~~ 221 (268)
T 3nok_A 179 PVELINELEC----ANGVIYANIWHSSDVLEIDPA---------------------------------TGTVVGVIDASA 221 (268)
T ss_dssp ECCCEEEEEE----ETTEEEEEETTCSEEEEECTT---------------------------------TCBEEEEEECHH
T ss_pred ccccccccEE----eCCEEEEEECCCCeEEEEeCC---------------------------------CCcEEEEEECCC
Confidence 1 1223333 256555444457788888887 3333333321
Q ss_pred -----------CCCCeEEEEEcCCCCEEEEEeC
Q 003208 255 -----------HEGSIFRIEWSSCGSKLVSVSD 276 (839)
Q Consensus 255 -----------h~~~V~~l~~~~~~~~l~s~s~ 276 (839)
-.+-.++|+++|+++.|+..+.
T Consensus 222 L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 222 LTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1246788999998877777665
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.42 E-value=0.0001 Score=76.79 Aligned_cols=263 Identities=11% Similarity=0.028 Sum_probs=156.6
Q ss_pred CeeEEEECCC-----CeeeeEEeeec-CceEEeEEeccc----ccccC--CCccceeeEEEEEc--CcEEEEEEeeccCC
Q 003208 44 SQVLLYDLEA-----GTLIRPFQVFH-GIRLHGISCNFI----NCTEG--SVSTRVTFEVALFG--EKRVKLFELNFELS 109 (839)
Q Consensus 44 ~~v~iwd~~~-----~~~~~~~~~~~-~~~v~~i~~~~~----~~~~~--~~~~~~~~~l~~~~--~~~i~iw~~~~~~~ 109 (839)
..|.+.|++. ++.+.++.... +...|.+-|+.- ..... +++ ..+.+.+ ++.|.|+|+.+...
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r----~~l~v~~l~s~~I~viD~~t~p~ 118 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIER----RFLIVPGLRSSRIYIIDTKPNPR 118 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCS----CEEEEEBTTTCCEEEEECCSCTT
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccC----CEEEEccCCCCeEEEEECCCCCC
Confidence 3688888876 78888877543 224566666210 01112 444 3444433 78999999864320
Q ss_pred CCCCCCCccccceeeeEecc------CCC-cceEEEEEeeccCCCcEEEEEeCC------CcEEEEecCCCceEEEEecC
Q 003208 110 PNSQYQPETCVNLSLVQSLP------RLS-HWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~------~h~-~~I~~~~~~~~~~~~~~las~~~d------~~i~vwd~~~~~~~~~~~~~ 176 (839)
+.+...++. ... ..-..+...| ++ +++++..+ +.|.+.|..+.+.+.++...
T Consensus 119 -----------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p---dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~ 183 (462)
T 2ece_A 119 -----------EPKIIKVIEPEEVKKVSGYSRLHTVHCGP---DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID 183 (462)
T ss_dssp -----------SCEEEEEECHHHHHHHHCEEEEEEEEECS---SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred -----------CceeeeeechhhcccccCCCcccceeECC---Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence 134444442 111 1345667778 88 66665544 78999999999999988633
Q ss_pred Cce--eEEEEeeccCCccceEEEEee-------------------cCCeEEEEEeeccccccCCCCCCCccCCCCCCCce
Q 003208 177 ERC--LLYSMKLWGDNLEALRIASGT-------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (839)
Q Consensus 177 ~~~--~~~s~~~~~~~~~~~~l~sg~-------------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (839)
... ..|.+-+ +++++.+++.. ....|.+||+.
T Consensus 184 ~~~~~~~Yd~~~---~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~------------------------ 236 (462)
T 2ece_A 184 RGDQYLAYDFWW---NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR------------------------ 236 (462)
T ss_dssp CTTCCCCCCEEE---ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT------------------------
T ss_pred CCCccccceEEE---CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC------------------------
Confidence 222 2222222 47788888874 36899999998
Q ss_pred eeEeecccccceeeEEEecC--CCCeEEEEE--cCCCCEEEEEe------CCCcEEEEEcccCccCCCCCceeeeceEee
Q 003208 236 CFKLQDQQHTAVNLFRLVGH--EGSIFRIEW--SSCGSKLVSVS------DDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (839)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~--~~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (839)
+.+.+..+.-- ......|.| +|++++++.++ .+++|.+|..+.+.. +..+...+.
T Consensus 237 ---------~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~------~~~~vIdi~ 301 (462)
T 2ece_A 237 ---------KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW------NAEKVIEIP 301 (462)
T ss_dssp ---------TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE------EEEEEEEEC
T ss_pred ---------CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce------eEEEEEeCC
Confidence 45555555431 123455656 99999887776 566888877654322 111100000
Q ss_pred c----------------cccceEEeEEC--CCEEEEEe-CCCeEEEEcCC----CceEEEeeccc---------CC----
Q 003208 306 G----------------HNARVWDCCLT--DSFIITAG-EDCTCRVWGSD----GKQLKMIKEHI---------GR---- 349 (839)
Q Consensus 306 ~----------------h~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~----~~~~~~~~~h~---------~~---- 349 (839)
. -......+.++ +++|+.+. ..+.|.++|+. .+.+..+.... +.
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~g 381 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTG 381 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCS
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCC
Confidence 0 01345667777 56665554 46899999982 24444443320 00
Q ss_pred ceEEEEEccCCCEEEEEe
Q 003208 350 GIWRCLYDSLSSLLVTAG 367 (839)
Q Consensus 350 ~i~~~~~~~~~~~l~t~~ 367 (839)
.-..++++|||++|+++.
T Consensus 382 gPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 382 APQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEcCCCCEEEEEc
Confidence 146789999999988887
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.38 E-value=1.1e-05 Score=83.63 Aligned_cols=270 Identities=9% Similarity=-0.039 Sum_probs=155.4
Q ss_pred CccccccCCCceeeee-----eEEEEecCCCCCCCcceEEEee-----------CCeeEEEECCCCeeeeEEeeec----
Q 003208 5 DLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH---- 64 (839)
Q Consensus 5 ~i~~w~~~~~~~~~~V-----t~l~f~~~~~~~~~~~~l~~g~-----------~~~v~iwd~~~~~~~~~~~~~~---- 64 (839)
++.+.|..+.+-.+.| ..++|+ || +++++.+. ++.|.+||..+++.+.++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~s--pD----g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAG--HS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEEC--TT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 5668998887733322 179999 99 66666654 5789999999999999998641
Q ss_pred --CceEEeEEecccccccCCCccceeeEEEEE-c-CcEEEE--EEeeccCCCCCCCCCccccceeeeEeccCCCcceEEE
Q 003208 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKL--FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (839)
Q Consensus 65 --~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~-~~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~ 138 (839)
....+.++++ |||+ .++++. + +..+.+ +|..+ +..+.. .+. .
T Consensus 121 ~~g~~P~~ia~S-------pDGk---~lyVan~~~~~~v~V~~iD~~t------------------v~~i~v-~~~---~ 168 (368)
T 1mda_H 121 SVGPRVHIIGNC-------ASSA---CLLFFLFGSSAAAGLSVPGASD------------------DQLTKS-ASC---F 168 (368)
T ss_dssp CBSCCTTSEEEC-------TTSS---CEEEEECSSSCEEEEEETTTEE------------------EEEEEC-SSC---C
T ss_pred ccCCCcceEEEc-------CCCC---EEEEEccCCCCeEEEEEEchhh------------------ceEEEC-CCc---e
Confidence 1246789999 9985 444443 3 467888 88763 111110 011 1
Q ss_pred EEeeccCCC-cEEEEEeCCCcEEEEecCC-----CceEEE----EecCCceeEEEEeeccCCccceEEEEeecCCeEEEE
Q 003208 139 CFLKVCNGN-RSLAIGCSDNSIRVWDISN-----SSIILE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (839)
Q Consensus 139 ~~~~~~~~~-~~las~~~d~~i~vwd~~~-----~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw 208 (839)
.+.| ++ ..+++.+.|+.+.+.|+.+ ++.... +....... . . +++..++..+. +.|.+.
T Consensus 169 ~~~p---~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~--~----~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 169 HIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q--A----NYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp CCEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E--E----TTTTEEEECBS-SCCEEE
T ss_pred EEcc---CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c--c----ccCCEEEEEcC-CEEEEE
Confidence 1234 33 3444556688888888876 332211 11111111 1 1 33344444444 889998
Q ss_pred EeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC---------CCc
Q 003208 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRS 279 (839)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------d~~ 279 (839)
|....... .+..|............. ......+.++|++++++.+.. +..
T Consensus 237 D~~~~~~~-------------------v~~~~~~~~~~~~~~~~~--p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 237 DIPAAGAT-------------------MKAAIDGNESGRKADNFR--SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp ECCSSCCE-------------------EECCCCSSCTHHHHTTEE--ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred ECCCCcce-------------------EEEEEEeccccccccccc--cCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 87511000 000011000000000000 011112679999998876543 235
Q ss_pred EEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC-EEEEEe-CCCeEEEEcC-CCceEEEeecccCCceEEE
Q 003208 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~-~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~ 354 (839)
+.++|+.+.+. +..+ .. ....+.++|+ ++ .+++.. .++.|.++|+ +++.+.++..... .+.+
T Consensus 296 ~~ViD~~t~~v-----v~~i-----~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~--P~~i 362 (368)
T 1mda_H 296 TSSVTASVGQT-----SGPI-----SN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG--PESL 362 (368)
T ss_dssp EEEEESSSCCE-----EECC-----EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC--CCEE
T ss_pred EEEEECCCCeE-----EEEE-----EC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC--CCEE
Confidence 66999988765 2211 11 1257888998 44 677777 5999999999 8888888876554 5677
Q ss_pred EEcc
Q 003208 355 LYDS 358 (839)
Q Consensus 355 ~~~~ 358 (839)
++.+
T Consensus 363 ~~~~ 366 (368)
T 1mda_H 363 SVQN 366 (368)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 7654
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=99.92 Aligned_cols=180 Identities=8% Similarity=-0.053 Sum_probs=98.5
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCc
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
++..|++++.|+.|+.||..+++.+.++.. . . +.+..+ ..++.++++++.||.|+.||..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~-~~s~p~---~~~g~~~v~~s~dg~l~a~d~~t------------- 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-P-VLQVPT---HVEEPAFLPDPNDGSLYTLGSKN------------- 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-C-SCCCC--------CCEEECTTTCCEEEC-----------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-C-ceecce---EcCCCEEEEeCCCCEEEEEECCC-------------
Confidence 567899999999999999999999877765 1 1 112111 24566778888999999999872
Q ss_pred cCCCCCCCceeeEeecccccceeeEEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEe
Q 003208 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (839)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (839)
++.+..+..+.. .+.+......+..+++++.|+.++.||..+++.. . ..
T Consensus 69 --------------------G~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~-----w-----~~ 118 (369)
T 2hz6_A 69 --------------------NEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ-----Q-----TL 118 (369)
T ss_dssp ---------------------CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred --------------------CceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE-----E-----Ee
Confidence 322222221111 0000000013456788888999999999987652 1 22
Q ss_pred eccccceEEeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEEEEEccCC---CEEEEEeCCCcEEEEecCC
Q 003208 305 YGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS---SLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 305 ~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~---~~l~t~~~dg~i~iw~~~~ 379 (839)
..+. .+. ..-.++.+++++.|+.|+.||. +|+.+..+..+. ....++.++. ..+++++.||.|..||.+.
T Consensus 119 ~~~~-~~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 119 SSAF-ADS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp ----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred cCCC-ccc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 1221 111 1114678889999999999999 787766654321 1223333432 4577789999999999854
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.33 E-value=0.00029 Score=73.42 Aligned_cols=204 Identities=14% Similarity=0.134 Sum_probs=127.5
Q ss_pred cceEEEee--CCeeEEEECCCC----eeeeEEe---ee---cCceEEeEEecccccccCCCccceeeEEEEEcC------
Q 003208 35 LPFLLAGS--GSQVLLYDLEAG----TLIRPFQ---VF---HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE------ 96 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~~----~~~~~~~---~~---~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~------ 96 (839)
+++|++.. ++.|.|+|+.+. +++.+++ .. .....+.+..+ |+| .++++.++
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-------pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-------PDA----IYISALGNEEGEGP 163 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-------SSC----EEEEEEEETTSCSC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-------CCe----EEEEcCCCcCCCCC
Confidence 56666655 689999999765 6666663 11 11257788888 887 67766665
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccC--CC-cceEEEEEeeccCCCcEEEEEe-------------------
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LS-HWVFDVCFLKVCNGNRSLAIGC------------------- 154 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-~~I~~~~~~~~~~~~~~las~~------------------- 154 (839)
+.|.++|..+ .+.+..+.. .. ..-..+-|+| +++.+++..
T Consensus 164 g~v~vlD~~T---------------~~v~~~~~~~~~~~~~~Yd~~~~p---~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 164 GGILMLDHYS---------------FEPLGKWEIDRGDQYLAYDFWWNL---PNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp CEEEEECTTT---------------CCEEEECCSBCTTCCCCCCEEEET---TTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CeEEEEECCC---------------CeEEEEEccCCCCccccceEEECC---CCCEEEEccCcCccccccccchhhhhhc
Confidence 7899999875 445555542 22 2234578899 999888774
Q ss_pred CCCcEEEEecCCCceEEEEecC-CceeEEEEeeccCCccceEEEEee------cCCeEEEEEeeccccccCCCCCCCccC
Q 003208 155 SDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGT------IYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (839)
Q Consensus 155 ~d~~i~vwd~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~------~dg~i~vw~~~~~~~~~~~~~~~~~~~ 227 (839)
.+.+|.+||+.+++.+.++... ....-..+.+ .+++++.++.+++ .+++|.+|....++...
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f-~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~---------- 294 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRP-LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA---------- 294 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE-CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE----------
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEe-eECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE----------
Confidence 3689999999998888888764 2233333333 2367888877766 45688888776211100
Q ss_pred CCCCCCceeeEeecccccceeeEEEe-------cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccC
Q 003208 228 HGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAE 288 (839)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~ 288 (839)
.++.+.. ..+....+. +-......|.++||+++|+++.. .+.|.++|+...
T Consensus 295 ---------~~vIdi~-~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 295 ---------EKVIEIP-AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp ---------EEEEEEC-CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred ---------EEEEeCC-CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 0000000 000000000 00245788999999999877654 679999999744
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.30 E-value=0.0002 Score=68.92 Aligned_cols=185 Identities=11% Similarity=0.034 Sum_probs=118.0
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEE-eecCCeEEEEEe
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKV 210 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~s-g~~dg~i~vw~~ 210 (839)
....+.|+ ++.+..+.+.+| .|+++|+.+++.+.++..+.....-.+.. .+..|.. .-.++.+.++|.
T Consensus 44 ftqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-----~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 44 FTEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-----WKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-----ETTEEEEEESSSSEEEEEET
T ss_pred ccceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-----eCCEEEEEEeeCCEEEEEEC
Confidence 45778886 456666777665 89999999999998887544321112222 2334443 345789999998
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
. +.+.+..+.-. ..=..++ ++++.|+.+..++.|.++|..+.+.
T Consensus 115 ~---------------------------------t~~~~~ti~~~-~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v 158 (262)
T 3nol_A 115 R---------------------------------NLRQVRSFNYD-GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTP 158 (262)
T ss_dssp T---------------------------------TCCEEEEEECS-SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSE
T ss_pred c---------------------------------cCcEEEEEECC-CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeE
Confidence 8 66667666532 1212343 5677777766678899999988655
Q ss_pred CCCCCceeeeceEeeccc-cceEEeEECCCEEEEE-eCCCeEEEEcC-CCceEEEeeccc-----------CCceEEEEE
Q 003208 291 KDSDSIEEVGSSVLYGHN-ARVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLKMIKEHI-----------GRGIWRCLY 356 (839)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~-~~dg~i~vw~~-~~~~~~~~~~h~-----------~~~i~~~~~ 356 (839)
...+.. ...+.. ..+..+.|.+..+... -.++.|.+.|. +++.+..+.... ......||+
T Consensus 159 -----~~~I~V-~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 159 -----VRTITV-TAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp -----EEEEEC-EETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred -----EEEEEe-ccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 332221 111222 2344566664445444 46889999999 888888776421 123578999
Q ss_pred ccCCCEEEEEeCC
Q 003208 357 DSLSSLLVTAGFD 369 (839)
Q Consensus 357 ~~~~~~l~t~~~d 369 (839)
+|+++.|+..|..
T Consensus 233 dp~~~~lfVTGK~ 245 (262)
T 3nol_A 233 DKEHHRLFVTGKL 245 (262)
T ss_dssp ETTTTEEEEEETT
T ss_pred cCCCCEEEEECCC
Confidence 9998877777753
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.29 E-value=7.3e-05 Score=83.21 Aligned_cols=76 Identities=16% Similarity=0.060 Sum_probs=45.8
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceEE--eEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEE
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD--CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~ 353 (839)
++.|..||+.+++.. ....+...+.. +...+..++.++.|+.++.||. +|+.+.++.......-..
T Consensus 443 ~g~l~a~D~~tG~~~-----------W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 511 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAK-----------WTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp CEEEEEECTTTCCEE-----------EEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCeEEEEECCCCCEE-----------EEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence 467888888776541 11111122222 2223778888999999999999 899998887544311112
Q ss_pred EEEccCCCEE
Q 003208 354 CLYDSLSSLL 363 (839)
Q Consensus 354 ~~~~~~~~~l 363 (839)
+.+..+|+.+
T Consensus 512 ~~~~~~G~~y 521 (571)
T 2ad6_A 512 MTYSFKGKQY 521 (571)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 3445666533
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.29 E-value=6.4e-05 Score=85.56 Aligned_cols=80 Identities=5% Similarity=0.030 Sum_probs=49.0
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceE--EeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEE
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~ 353 (839)
++.|..||+.+++.. - .. .+..+.. .+...+.+++.++.|+.++.||. +|+.+..+....+-.-.-
T Consensus 437 ~g~l~A~D~~tG~~~-----W-----~~-~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p 505 (668)
T 1kv9_A 437 SGALLAWDPVKQKAA-----W-----KV-PYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP 505 (668)
T ss_dssp EEEEEEEETTTTEEE-----E-----EE-EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cceEEEEeCCCCcEE-----E-----Ec-cCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCc
Confidence 477899998887651 1 11 1112222 23334789999999999999999 899988887654310112
Q ss_pred EEEccCCC-EEEEEe
Q 003208 354 CLYDSLSS-LLVTAG 367 (839)
Q Consensus 354 ~~~~~~~~-~l~t~~ 367 (839)
+.+..+|+ +++.+.
T Consensus 506 ~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 506 MTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEEEe
Confidence 34445665 444443
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.26 E-value=0.00053 Score=65.42 Aligned_cols=194 Identities=12% Similarity=0.074 Sum_probs=124.1
Q ss_pred eeeeEeccCCC--cceEEEEEeeccCCCcEEEEEeCC--CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE
Q 003208 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (839)
Q Consensus 122 ~~~~~~~~~h~--~~I~~~~~~~~~~~~~~las~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~ 197 (839)
.+.+.++ .|. .....+.|++ +.+..+.+.+ ..|+++|+.+++.+.++..+....--.+.. ..+.+.+
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~----~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~----~~~~ly~ 79 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR----GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA----WRDRLIQ 79 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET----TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE----ETTEEEE
T ss_pred eEEEEEc-CCCCccccccEEEEC----CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE----eCCEEEE
Confidence 4555555 343 4567898874 4555666664 489999999999999887554322222322 1233344
Q ss_pred EeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 003208 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (839)
Q Consensus 198 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 277 (839)
..-.++.+.++|.. +.+.+..+... ..=.+++ +++..|+.+..+
T Consensus 80 ltw~~~~v~v~D~~---------------------------------tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs 123 (243)
T 3mbr_X 80 LTWRNHEGFVYDLA---------------------------------TLTPRARFRYP-GEGWALT--SDDSHLYMSDGT 123 (243)
T ss_dssp EESSSSEEEEEETT---------------------------------TTEEEEEEECS-SCCCEEE--ECSSCEEEECSS
T ss_pred EEeeCCEEEEEECC---------------------------------cCcEEEEEeCC-CCceEEe--eCCCEEEEECCC
Confidence 44568999999988 67777766632 2223454 466677776678
Q ss_pred CcEEEEEcccCccCCCCCceeeeceEeeccc---cceEEeEECCCEEEEEe-CCCeEEEEcC-CCceEEEeecc------
Q 003208 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---ARVWDCCLTDSFIITAG-EDCTCRVWGS-DGKQLKMIKEH------ 346 (839)
Q Consensus 278 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~l~s~~-~dg~i~vw~~-~~~~~~~~~~h------ 346 (839)
+.|.++|..+.+. ...+. ...+. ..+..+.+.+..+.... .+..|.+.|. +++.+..+...
T Consensus 124 ~~l~~iDp~t~~~-----~~~I~---V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 124 AVIRKLDPDTLQQ-----VGSIK---VTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp SEEEEECTTTCCE-----EEEEE---CEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred CeEEEEeCCCCeE-----EEEEE---EccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 8999999988654 33222 21222 23455666654455444 6789999999 88888877632
Q ss_pred ------cCCceEEEEEccCCCEEEEEeC
Q 003208 347 ------IGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 347 ------~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
...-...|+++|+++.|+..|.
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2224578999998877777664
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.23 E-value=0.00011 Score=79.36 Aligned_cols=286 Identities=10% Similarity=0.022 Sum_probs=166.3
Q ss_pred CCeeEEEECCCCeeeeEEeeecCce--------------------------------------EEeEEecccccccCCCc
Q 003208 43 GSQVLLYDLEAGTLIRPFQVFHGIR--------------------------------------LHGISCNFINCTEGSVS 84 (839)
Q Consensus 43 ~~~v~iwd~~~~~~~~~~~~~~~~~--------------------------------------v~~i~~~~~~~~~~~~~ 84 (839)
.|.|+|+-+-+++++..+.+|...+ .+....|.. --.+||
T Consensus 24 ~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t--~g~~DG 101 (595)
T 1fwx_A 24 SGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT--EGKYDG 101 (595)
T ss_dssp TCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE--TTEEEE
T ss_pred CceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC--CCCcCC
Confidence 7999999999999998887764211 111222210 001355
Q ss_pred cceeeEEEEE-cCcEEEEEEeeccCCCCCCCCCccccceeeeE--eccCCCcceEEEEE-e-eccCCCcEEEEEe-----
Q 003208 85 TRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCF-L-KVCNGNRSLAIGC----- 154 (839)
Q Consensus 85 ~~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~I~~~~~-~-~~~~~~~~las~~----- 154 (839)
+ .+++.. .+..|.+.|+++ ++... .+.. ...+..+++ . | ++.+++.++
T Consensus 102 ~---~lfVnd~~~~rVavIdl~t---------------~~~~~ii~ip~-g~~phg~~~~~~p---~~~~v~~~~~~~~p 159 (595)
T 1fwx_A 102 R---FLFMNDKANTRVARVRCDV---------------MKCDAILEIPN-AKGIHGLRPQKWP---RSNYVFCNGEDETP 159 (595)
T ss_dssp E---EEEEEETTTTEEEEEETTT---------------TEEEEEEECSS-CCSEEEEEECCSS---BCSEEEEEECSCEE
T ss_pred C---EEEEEcCCCCEEEEEECCC---------------ceEeeEEeCCC-CCCCcceeeeecC---CCcEEEEecccccc
Confidence 3 333333 367899999886 34444 3332 234788887 4 7 888888774
Q ss_pred -------------CCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCC---------------eEE
Q 003208 155 -------------SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN---------------EII 206 (839)
Q Consensus 155 -------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg---------------~i~ 206 (839)
.++.+.+.|..+.+.+.++.......... + ++++.++++.+.+. .|.
T Consensus 160 ~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~--~---spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 160 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCD--A---DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEE--E---CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred cCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceE--E---CCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 24579999999998888876432221212 1 57888888877553 477
Q ss_pred EEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc-cee-eEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 003208 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVN-LFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIW 283 (839)
Q Consensus 207 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~iw 283 (839)
+.|+...+.. .+.++...-+.+.+.+.... .+. +..+.. .....++.++|||+++++++ .+.+|.++
T Consensus 235 V~~~~~~~~~---------v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVi 304 (595)
T 1fwx_A 235 VFNIAEIEKA---------IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVL 304 (595)
T ss_dssp EEEHHHHHHH---------HHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred EeeccceeEe---------ccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEE
Confidence 7776522110 01111111123444444321 222 333332 23567899999999877665 67899999
Q ss_pred EcccCccCCCCCceeeec-eEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcC-C----------CceEEEeecccCC
Q 003208 284 EVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-D----------GKQLKMIKEHIGR 349 (839)
Q Consensus 284 d~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~-~----------~~~~~~~~~h~~~ 349 (839)
|+.+.+......+.+... .....-....+.++|+ +...++...|+.|.+|++ . .+.+.++..|..
T Consensus 305 d~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq- 383 (595)
T 1fwx_A 305 DVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ- 383 (595)
T ss_dssp EGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-
T ss_pred ECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-
Confidence 998642100000000000 0111223467888998 534456778999999998 4 456777766644
Q ss_pred ce-E----EEEEccCCCEEEEEeC
Q 003208 350 GI-W----RCLYDSLSSLLVTAGF 368 (839)
Q Consensus 350 ~i-~----~~~~~~~~~~l~t~~~ 368 (839)
+- . .+.++|||++|++...
T Consensus 384 pGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 384 PGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEES
T ss_pred cccceeccceEeCCCCCEEEEcCC
Confidence 21 1 1245799999988764
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.17 E-value=0.00033 Score=67.34 Aligned_cols=192 Identities=8% Similarity=0.004 Sum_probs=122.4
Q ss_pred eeeEeccCCC--cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 123 SLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 123 ~~~~~~~~h~--~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
+.+.++. |. .....+.|+ ++.+..+.+.++.|+++|+.+++.+.++ .+.....-.+.. .. +.+.+..-
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~g-~~Ly~ltw 113 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS---DG-ERLYQLTW 113 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE---CS-SCEEEEES
T ss_pred EEEEEEc-CCCccccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE---eC-CEEEEEEc
Confidence 4445552 33 345788886 4566778888899999999999998877 433211112332 12 23333344
Q ss_pred cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003208 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (839)
Q Consensus 201 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i 280 (839)
.++.+.+||.. +.+.+..+.- ...-.+++ ++++.|+.+..++.|
T Consensus 114 ~~~~v~V~D~~---------------------------------Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 114 TEGLLFTWSGM---------------------------------PPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp SSCEEEEEETT---------------------------------TTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEE
T ss_pred cCCEEEEEECC---------------------------------cCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEE
Confidence 67899999988 6777776663 22223444 567888887778999
Q ss_pred EEEEcccCccCCCCCceeeeceEeecccc---ceEEeEECCCEEEEE-eCCCeEEEEcC-CCceEEEeecc---------
Q 003208 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLKMIKEH--------- 346 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~l~s~-~~dg~i~vw~~-~~~~~~~~~~h--------- 346 (839)
.++|..+.+. ...+. ...+.. .+..+.|.+..+... ..+..|.+.|. +++.+..+...
T Consensus 158 ~~iDp~T~~v-----~~~I~---V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 158 TFHEPDGFAL-----VGAVQ---VKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp EEECTTTCCE-----EEEEE---CEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred EEEcCCCCeE-----EEEEE---eCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 9999988655 33222 222222 345667764445444 46889999999 88888777542
Q ss_pred ---cCCceEEEEEccCCCEEEEEeC
Q 003208 347 ---IGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 347 ---~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
...-...||++|+++.|+..|.
T Consensus 230 ~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1124678999998766665553
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.15 E-value=0.0014 Score=72.80 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.5
Q ss_pred CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 326 ~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+|.|..||. +++.+.++.... ++.+..+...+..++.++.||.|+.+|.++
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 3578999999 788877765432 233333333456778899999999999854
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.11 E-value=0.00041 Score=78.91 Aligned_cols=51 Identities=6% Similarity=-0.010 Sum_probs=38.5
Q ss_pred CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|.|..||+ +++.+.+..... +.....+...+.+++.++.||.++.||.+.
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 488999999 888887776443 244444555678889999999999999854
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.04 E-value=0.00089 Score=74.37 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=47.1
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceE--EeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEE
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~ 353 (839)
++.|..||+.+++.. ....+..+.+ .+...+.+++.++.|+.++.||. +|+.+.+++...+....-
T Consensus 452 ~G~l~A~D~~tG~~~-----------W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P 520 (599)
T 1w6s_A 452 LGQIKAYNAITGDYK-----------WEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP 520 (599)
T ss_dssp CEEEEEECTTTCCEE-----------EEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cCeEEEEECCCCCEE-----------eEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEecc
Confidence 467777887776541 1111111121 12334788888999999999999 899998887554311122
Q ss_pred EEEccCCC-EEEEE
Q 003208 354 CLYDSLSS-LLVTA 366 (839)
Q Consensus 354 ~~~~~~~~-~l~t~ 366 (839)
+.+..+|+ ++++.
T Consensus 521 ~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 521 MTYTHKGTQYVAIY 534 (599)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEeCCEEEEEEE
Confidence 45556665 34333
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.01 E-value=0.00042 Score=74.94 Aligned_cols=199 Identities=8% Similarity=-0.005 Sum_probs=119.1
Q ss_pred cceEEEee--CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE------------------
Q 003208 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF------------------ 94 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~------------------ 94 (839)
+++|.... ++.|.+.|+++.+....+....+..++++++... |+++ .+++..
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~-----p~~~---~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKW-----PRSN---YVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCS-----SBCS---EEEEEECSCEESSCSSSSTTCGGG
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeec-----CCCc---EEEEecccccccCCCCcccccccc
Confidence 77888766 5789999999999888666554456899998521 5653 444442
Q ss_pred cCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCC-----------------
Q 003208 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN----------------- 157 (839)
Q Consensus 95 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~----------------- 157 (839)
.++.+.++|.++ .+....+.--. .-..++++| +++++++.+.+.
T Consensus 173 ~~~~vtvID~~t---------------~~v~~qI~Vgg-~pd~~~~sp---dGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 173 YVNVFTAVDADK---------------WEVAWQVLVSG-NLDNCDADY---EGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp EEEEEEEEETTT---------------TEEEEEEEESS-CCCCEEECS---SSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cCceEEEEECCC---------------CeEEEEEEeCC-CccceEECC---CCCEEEEEecCcccCcchhhccccccceE
Confidence 245788888764 23333332111 224466777 788777766432
Q ss_pred ---------------------cEEEEecCC--Cce-EEEEecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEeec
Q 003208 158 ---------------------SIRVWDISN--SSI-ILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDW 212 (839)
Q Consensus 158 ---------------------~i~vwd~~~--~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~~ 212 (839)
.|.|.|..+ ++. +..+..+... ..+.+ +|||.+++++ ..+..|.++|+..
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P--hGv~~---sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP--HGCNM---APDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC--CCEEE---CTTSSEEEEECTTSSBEEEEEGGG
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc--eEEEE---cCCCCEEEEeCCCCCeEEEEECcc
Confidence 366777766 434 4444322111 11222 6899877665 4678999999883
Q ss_pred cccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 003208 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (839)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~ 287 (839)
.+.... .+ ............ -......++|+|+|...++.-.|++|..||+..
T Consensus 309 ~~~~~~----------------~~-----l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 309 FDAVFY----------------EN-----ADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHH----------------SC-----CCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cccccc----------------cc-----cCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 210000 00 000111222222 224578899999995456677899999999987
No 258
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.01 E-value=0.061 Score=64.56 Aligned_cols=235 Identities=11% Similarity=0.090 Sum_probs=117.6
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc-CCCcEEEEEe---CCCcEEEEec
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-NGNRSLAIGC---SDNSIRVWDI 164 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-~~~~~las~~---~d~~i~vwd~ 164 (839)
.+++++..|.=.+|.+......... ..+.+..+.. -++|.++++.... .+...|++++ .+|.+++..-
T Consensus 339 ~lFvgS~~Gds~l~~~~~~~~~~~~-------~~~~~~~~~N-~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~ 410 (1158)
T 3ei3_A 339 VVFVGSRLGDSQLVKLNVDSNEQGS-------YVVAMETFTN-LGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRN 410 (1158)
T ss_dssp EEEEECSSSCEEEEEECSSCCTTSC-------CEEEEEEECC-CCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEE
T ss_pred EEEEEEecCCcEEEEEecCCCCccc-------eEEeEeeecC-cCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEec
Confidence 7777776666667777643211111 1344555543 3789999886421 1123555543 3677887644
Q ss_pred C-CCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 165 S-NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 165 ~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
. ..+.+..+.-+.-..+|++.....+....+|+.+..+.+ +++.+....
T Consensus 411 Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~----------------------------- 460 (1158)
T 3ei3_A 411 GIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEE----------------------------- 460 (1158)
T ss_dssp SBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTE-----------------------------
T ss_pred CCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCc-----------------------------
Confidence 2 122233333333345677654322334567777666555 555553100
Q ss_pred ccceeeEEEecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee-ccccceEEeEECCC
Q 003208 244 HTAVNLFRLVGH---EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLTDS 319 (839)
Q Consensus 244 ~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 319 (839)
...+ ...+- ...+.+-.+ .+ ..++=... ..|++.+...... +. ... .....|...+..+.
T Consensus 461 --veev-~~~gf~~~~~TL~~~~l-~~-~~ivQVt~-~~Irli~~~~~~~-----~~-----~w~~p~~~~I~~As~n~~ 524 (1158)
T 3ei3_A 461 --VEET-ELMGFVDDQQTFFCGNV-AH-QQLIQITS-ASVRLVSQEPKAL-----VS-----EWKEPQAKNISVASCNSS 524 (1158)
T ss_dssp --EEEE-CCTTCCSSSCEEEEEEE-TT-TEEEEEES-SCEEEEESSSCCE-----EE-----EECCTTCCCCCEEEECSS
T ss_pred --cccc-ccccccCCCCcEEEEEc-CC-CeEEEEec-CEEEEEECCCCeE-----EE-----EEECCCCCEEEEEEeCCC
Confidence 0000 00000 011111111 11 12222222 2355555443221 11 111 22345666666667
Q ss_pred EEEEEeCCCeEEEEcC-CCceEEEee-cccCCceEEEEEccC------CCEEEEEeC-CCcEEEEecCC
Q 003208 320 FIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSL------SSLLVTAGF-DSAIKVHQFQA 379 (839)
Q Consensus 320 ~l~s~~~dg~i~vw~~-~~~~~~~~~-~h~~~~i~~~~~~~~------~~~l~t~~~-dg~i~iw~~~~ 379 (839)
+++.+. ++.+.++++ +++.....+ .-.. .|.|+++.|. +.+++.|.. |+++++++++.
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~-evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQISHTEMEH-EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEEECSS-CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEE-CCEEEEEEeeCCceeeecccCCCC-ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 777775 678888877 443222111 1223 5999998753 368999996 99999999963
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.98 E-value=0.0018 Score=66.43 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeC-------
Q 003208 257 GSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE------- 326 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~------- 326 (839)
.....|+++|+++.|+.+ ...+.|..+++...... ..+.+ . .... ...+++. +++.++...
T Consensus 185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---~~~~~---~--~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---TAEVL---V--KIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT---CEEEE---E--ECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC---ccceE---E--eCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 345679999999866655 55688999998753210 01111 1 1122 5677777 565555544
Q ss_pred ---CCeEEEEcCCCceEEEeecccC---CceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 ---DCTCRVWGSDGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 ---dg~i~vw~~~~~~~~~~~~h~~---~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+.|..++..++.+..+....+ ..+.++++ .+++++++....+.|..+++..
T Consensus 256 ~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678889988888877765432 13566666 4566666666788899998853
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.96 E-value=0.0026 Score=70.75 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=49.3
Q ss_pred CCcEEEEEcccCccCCCCCceeeeceEeeccccceE--EeEECCCEEEEEeCCCeEEEEcC-CCceEEEeecccCCceEE
Q 003208 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (839)
Q Consensus 277 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~l~s~~~dg~i~vw~~-~~~~~~~~~~h~~~~i~~ 353 (839)
++.|..||+.+++.. . .. .+..+++ .+...+.+++.++.|+.++.||. +|+.+.+++...+-...-
T Consensus 465 ~G~l~A~D~~tG~~~------W----~~-~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P 533 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV------W----EH-KEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP 533 (582)
T ss_dssp SEEEEEECTTTCCEE------E----EE-EESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cceEEEEECCCCCEE------E----Ee-cCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc
Confidence 577888888877641 1 11 1111221 12334788999999999999999 899999887654311112
Q ss_pred EEEccCCC-EEEEE
Q 003208 354 CLYDSLSS-LLVTA 366 (839)
Q Consensus 354 ~~~~~~~~-~l~t~ 366 (839)
+.+..+|+ ++++.
T Consensus 534 ~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 534 ITWEQDGEQYLGVT 547 (582)
T ss_dssp EEEEETTEEEEEEE
T ss_pred eEEEECCEEEEEEE
Confidence 56666776 44433
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.93 E-value=0.0099 Score=66.05 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.0
Q ss_pred CCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 327 dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
+|.|..||+ +++.+.+..... +++.-.+...+.+++.|+.||.++.||.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 688999999 888877765432 232222223466788899999999999854
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.92 E-value=0.0073 Score=67.03 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.4
Q ss_pred CCCeEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 326 ~dg~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+|.+..||+ +++.+.+..... +.+.-.+...+.+++.++.||.++.||.++
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 3578999999 788777664321 222222233566778899999999999854
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.90 E-value=0.0067 Score=58.72 Aligned_cols=211 Identities=8% Similarity=0.006 Sum_probs=129.0
Q ss_pred EeccCCCcceEEEEEeeccCCCcEE-EEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCe
Q 003208 126 QSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (839)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l-as~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~ 204 (839)
+.+.+-.+.+..+++.| +++.| ++...++.|...|.. ++.++++......-.-.+.+ .+++.++++.-.++.
T Consensus 20 ~~l~g~~~~lSGla~~~---~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~---~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSA---QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEY---IGDNQFVISDERDYA 92 (255)
T ss_dssp EECTTCCSCEEEEEEET---TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEE---CSTTEEEEEETTTTE
T ss_pred eECCCcccCcceeEEeC---CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEE---eCCCEEEEEECCCCc
Confidence 46677777899999999 66655 456678889999997 88887774321111112222 356666666656788
Q ss_pred EEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE------ecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003208 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL------VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (839)
Q Consensus 205 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~l~~~~~~~~l~s~s~d~ 278 (839)
+.++++..... + ..+... .......-+|+|+|+++.|+++.+..
T Consensus 93 l~~~~v~~~~~-----------------------i-------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~ 142 (255)
T 3qqz_A 93 IYVISLTPNSE-----------------------V-------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN 142 (255)
T ss_dssp EEEEEECTTCC-----------------------E-------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred EEEEEcCCCCe-----------------------e-------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC
Confidence 99888761110 0 001111 12345678999999998888877766
Q ss_pred cEEEEEcccCccCCCCCceeeec--eEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcCCCceEEEeecccC-----
Q 003208 279 SARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (839)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~~----- 348 (839)
...+|.++.... ...+..... .....+...+.+++++ +.+++.......+.++|..|+.+..+.-..+
T Consensus 143 p~~i~~~~g~~~--~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 143 PIEVYKVNGLLS--SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp SEEEEEEESTTC--SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCS
T ss_pred CceEEEEccccc--CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcc
Confidence 666776652100 001111100 0001122346778887 4677777888999999998887766543321
Q ss_pred ---CceEEEEEccCCCEEEEEeCCCcEEEEe
Q 003208 349 ---RGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (839)
Q Consensus 349 ---~~i~~~~~~~~~~~l~t~~~dg~i~iw~ 376 (839)
..--.|+|+++|++.++ +.-+.+..+.
T Consensus 221 ~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp SCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 13578999999985554 6666555554
No 264
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.84 E-value=0.028 Score=57.43 Aligned_cols=276 Identities=9% Similarity=0.020 Sum_probs=142.2
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEee---ecCceEEeEEecccccccCCCccceeeEEEE
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV---FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (839)
...+.+|+|. ++ +..+++|..+.|. ...+.|+.-..+.. .....+.+|.+. ++ ..+++
T Consensus 35 ~~~~~~v~~~--~~----~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-------~~-----~~~~~ 95 (327)
T 2xbg_A 35 TATILDMSFI--DR----HHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-------GN-----EGWIV 95 (327)
T ss_dssp SSCEEEEEES--SS----SCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-------TT-----EEEEE
T ss_pred CCcEEEEEEC--CC----CcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-------CC-----eEEEE
Confidence 3468899997 65 6677778777653 33333432111111 123368888887 53 45555
Q ss_pred EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEE
Q 003208 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (839)
Q Consensus 94 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~ 173 (839)
+..+. |+.-.... . .++.+.....+.+.+..+.+.+ ++..++.+ .++.|.. ....++....+
T Consensus 96 g~~g~--i~~S~DgG---~--------tW~~~~~~~~~~~~~~~i~~~~---~~~~~~~~-~~g~v~~-S~DgG~tW~~~ 157 (327)
T 2xbg_A 96 GEPPI--MLHTTDGG---Q--------SWSQIPLDPKLPGSPRLIKALG---NGSAEMIT-NVGAIYR-TKDSGKNWQAL 157 (327)
T ss_dssp EETTE--EEEESSTT---S--------SCEECCCCTTCSSCEEEEEEEE---TTEEEEEE-TTCCEEE-ESSTTSSEEEE
T ss_pred ECCCe--EEEECCCC---C--------CceECccccCCCCCeEEEEEEC---CCCEEEEe-CCccEEE-EcCCCCCCEEe
Confidence 55553 33332211 1 1333332223345577888777 67666655 4554322 12234444444
Q ss_pred ecCCceeEEEEeeccCCccceEEEEeecCCeEEE-EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV-WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~v-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
..+....++.+.+ .+++.+++.+. .|.+.. +|-. + ..-+.+ -
T Consensus 158 ~~~~~~~~~~~~~---~~~~~~~~~g~-~G~~~~S~d~g-G------------------------------~tW~~~--~ 200 (327)
T 2xbg_A 158 VQEAIGVMRNLNR---SPSGEYVAVSS-RGSFYSTWEPG-Q------------------------------TAWEPH--N 200 (327)
T ss_dssp ECSCCCCEEEEEE---CTTSCEEEEET-TSSEEEEECTT-C------------------------------SSCEEE--E
T ss_pred ecCCCcceEEEEE---cCCCcEEEEEC-CCcEEEEeCCC-C------------------------------CceeEC--C
Confidence 4333334556655 35566666654 444432 2210 0 011222 1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee--ccccceEEeEEC-CCEEEEEeCCCe
Q 003208 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY--GHNARVWDCCLT-DSFIITAGEDCT 329 (839)
Q Consensus 253 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~l~s~~~dg~ 329 (839)
......+..+.+.++++.+ .++.+|.+++.+.+.+.. .+.+ ... .+...+.++.+. +..++.++.++.
T Consensus 201 ~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-----W~~~---~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 201 RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-----WGEL---LSPLRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-----ECCC---BCTTSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-----eEec---cCCcccCCcceEEEEecCCCEEEEEeCCCe
Confidence 2345678889999988654 556678887774332221 1100 111 122357788887 445555566777
Q ss_pred EEEEcCCCceEEEeec---ccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 330 CRVWGSDGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 330 i~vw~~~~~~~~~~~~---h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+..-.-.|+.-..+.. ... .+.++.+.+++ .++.++.+|.|.-++-
T Consensus 272 i~~S~DgG~tW~~~~~~~~~~~-~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LLCSQDGGQTWQQDVDVKKVPS-NFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEESSTTSSCEECGGGTTSSS-CCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEeCCCCcccEEcCccCCCCC-CeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 7432223443333332 123 47788887554 4667788897766653
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.82 E-value=0.012 Score=59.52 Aligned_cols=245 Identities=8% Similarity=0.006 Sum_probs=128.5
Q ss_pred CeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCC
Q 003208 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS 132 (839)
Q Consensus 54 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 132 (839)
.+.+..+.. +....+++++ ++| .++++ ..++.|..|+.+.. ....... .
T Consensus 22 ~~~~~~~p~--~~~pegia~~-------~~g----~lyv~d~~~~~I~~~d~~g~--------------~~~~~~~---~ 71 (306)
T 2p4o_A 22 AKIITSFPV--NTFLENLASA-------PDG----TIFVTNHEVGEIVSITPDGN--------------QQIHATV---E 71 (306)
T ss_dssp EEEEEEECT--TCCEEEEEEC-------TTS----CEEEEETTTTEEEEECTTCC--------------EEEEEEC---S
T ss_pred ceEeEeCCC--CCCcceEEEC-------CCC----CEEEEeCCCCeEEEECCCCc--------------eEEEEeC---C
Confidence 344444432 2347889998 777 44444 46788888876421 1111122 2
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCC--cEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
....++++.+ +++++++....+ .|..+|..+++.......+.......+.. .+++..+++....+.|+.+|.
T Consensus 72 ~~p~gia~~~---dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~---~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 72 GKVSGLAFTS---NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP---LSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp SEEEEEEECT---TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE---SSSSEEEEEETTTTEEEEEET
T ss_pred CCceeEEEcC---CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc---cCCCcEEEEECCCCeEEEEeC
Confidence 4688999998 888665543322 46667777776543332222111122222 234445555545788888876
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccc-C
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRA-E 288 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~d~~i~iwd~~~-~ 288 (839)
..++ .+++......... ...+.-.....| +|+++.|+.+ ...+.|..+++.. +
T Consensus 146 ~~~~----------------------~~v~~~~~~~~~~-~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g 200 (306)
T 2p4o_A 146 VQPS----------------------GSIWLEHPMLARS-NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTD 200 (306)
T ss_dssp TTTE----------------------EEEEEECGGGSCS-STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTS
T ss_pred CCCc----------------------EeEEEECCccccc-cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 4110 0000000000000 000111234555 7788766554 5567899999875 2
Q ss_pred ccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCCCceEE--EeecccCCceEEEEEc---cCCC
Q 003208 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK--MIKEHIGRGIWRCLYD---SLSS 361 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~--~~~~h~~~~i~~~~~~---~~~~ 361 (839)
... ..+ .+. .......+++. +++.++....+.|.+++..++... .+..... ..++++|. |++.
T Consensus 201 ~~~---~~~-----~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 201 KPG---EPE-----IFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI-GSTAVAFGQTEGDCT 270 (306)
T ss_dssp CBC---CCE-----EEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT-TEEEEEECCSTTTTT
T ss_pred CCC---ccE-----EEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccC-CceEEEEecccCCCC
Confidence 210 011 111 01233456665 566666666789999998776533 2332222 47899998 7877
Q ss_pred EEEEEeCC
Q 003208 362 LLVTAGFD 369 (839)
Q Consensus 362 ~l~t~~~d 369 (839)
.|+.....
T Consensus 271 ~LyVt~~~ 278 (306)
T 2p4o_A 271 AIYVVTNG 278 (306)
T ss_dssp EEEEEECT
T ss_pred EEEEECCC
Confidence 77666554
No 266
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.78 E-value=0.026 Score=55.75 Aligned_cols=194 Identities=8% Similarity=-0.078 Sum_probs=110.8
Q ss_pred cceEEEEEeeccCCCcEEEE-EeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc-ceEEEEeecCCeEEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~l~sg~~dg~i~vw~~ 210 (839)
..+.++++.| ++..|+. -...+.|.+++.........+.... .....+.+ +++ +.+.++....+.|.++++
T Consensus 36 ~~~~gi~~d~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~---d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDC---VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIAL---DHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEE---ETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEec---CCCEEEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEE---EecCCeEEEEECCCCEEEEEEc
Confidence 3578899998 6655554 4457899999997654433332211 11223333 343 445555555678888887
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEccc
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRA 287 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---d~~i~iwd~~~ 287 (839)
. .................++++|++..|+.+.. .+.|..++++.
T Consensus 109 ~---------------------------------g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 109 D---------------------------------GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp T---------------------------------SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred C---------------------------------CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 5 11111111112246789999997666665554 36788888765
Q ss_pred CccCCCCCceeeeceEeeccccceEEeEEC--CCEE-EEEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEE
Q 003208 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (839)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~ 364 (839)
... +. ...........++++ ++.| ++-...+.|.+++..+.....+..... ....++.. ++.+++
T Consensus 156 ~~~------~~----~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~-~P~gi~~d-~~~lyv 223 (267)
T 1npe_A 156 TNR------RI----LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYY 223 (267)
T ss_dssp CCC------EE----EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEE
T ss_pred CCc------EE----EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC-CceEEEEe-CCEEEE
Confidence 322 11 111222356778887 3455 455566899999996544433322222 34567664 344444
Q ss_pred EEeCCCcEEEEecC
Q 003208 365 TAGFDSAIKVHQFQ 378 (839)
Q Consensus 365 t~~~dg~i~iw~~~ 378 (839)
+....+.|..++..
T Consensus 224 a~~~~~~v~~~d~~ 237 (267)
T 1npe_A 224 TDWKTNSVIAMDLA 237 (267)
T ss_dssp EETTTTEEEEEETT
T ss_pred EECCCCeEEEEeCC
Confidence 44456889999885
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.78 E-value=0.00098 Score=75.95 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=69.0
Q ss_pred EEEEecCC-CCCCCcceEEEee-CC-----------eeEEEECCCCee--eeEEeeecCceEEeEEecccccccCCCccc
Q 003208 22 ALCFVHLP-SHLSSLPFLLAGS-GS-----------QVLLYDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (839)
Q Consensus 22 ~l~f~~~~-~~~~~~~~l~~g~-~~-----------~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 86 (839)
++++. + + +++++.|. +. .+.+||..+++- +..+.........++++. .++
T Consensus 190 ~~av~--~~~----g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-------~~g-- 254 (656)
T 1k3i_A 190 AAAIE--PTS----GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-------GNG-- 254 (656)
T ss_dssp EEEEE--TTT----TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-------TTS--
T ss_pred eEEEE--ecC----CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-------CCC--
Confidence 55666 6 5 67777764 21 688999988753 222222122122345665 666
Q ss_pred eeeEEEEEc--CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe-CC-----Cc
Q 003208 87 VTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SD-----NS 158 (839)
Q Consensus 87 ~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~-~d-----~~ 158 (839)
.+++.+| +..+.+||..+.. +..+..+...+ +-.++++.+ ++++++.|+ .+ ..
T Consensus 255 --~lyv~GG~~~~~v~~yd~~t~~-------------W~~~~~~~~~R-~~~s~~~~~---dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 255 --QIVVTGGNDAKKTSLYDSSSDS-------------WIPGPDMQVAR-GYQSSATMS---DGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp --CEEEECSSSTTCEEEEEGGGTE-------------EEECCCCSSCC-SSCEEEECT---TSCEEEECCCCCSSSCCCC
T ss_pred --CEEEeCCCCCCceEEecCcCCc-------------eeECCCCCccc-cccceEEec---CCeEEEEeCcccCCccccc
Confidence 5666665 4689999987643 55444443322 224556667 888888888 34 56
Q ss_pred EEEEecCCCce
Q 003208 159 IRVWDISNSSI 169 (839)
Q Consensus 159 i~vwd~~~~~~ 169 (839)
+.+||..+.+-
T Consensus 316 ~e~yd~~t~~W 326 (656)
T 1k3i_A 316 GEVYSPSSKTW 326 (656)
T ss_dssp EEEEETTTTEE
T ss_pred ceEeCCCCCcc
Confidence 99999987653
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.57 E-value=0.02 Score=58.41 Aligned_cols=239 Identities=12% Similarity=0.034 Sum_probs=124.5
Q ss_pred eeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeee-------------------cCceEEeEEecccccc
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-------------------HGIRLHGISCNFINCT 79 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~-------------------~~~~v~~i~~~~~~~~ 79 (839)
..++++. ++ +.++.++. ++.|..||..+++. ..+... ....+.+|++.
T Consensus 21 p~~i~~d--~~----g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~----- 88 (322)
T 2fp8_A 21 PNSFTFD--ST----NKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN----- 88 (322)
T ss_dssp CCCEECC--TT----CSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE-----
T ss_pred ceEEEEc--CC----CCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEc-----
Confidence 3578888 77 77666666 78999999876543 223210 01247889988
Q ss_pred cCC-CccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeE-eccCC-CcceEEEEEeeccCCCcEEEEEeC-
Q 003208 80 EGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SLPRL-SHWVFDVCFLKVCNGNRSLAIGCS- 155 (839)
Q Consensus 80 ~~~-~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h-~~~I~~~~~~~~~~~~~~las~~~- 155 (839)
+ ++ .++++...+.|..++..... .+.+. ...+. .....++++.+ .++.+.++-..
T Consensus 89 --~~~g----~l~v~d~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~p~~i~~d~--~~G~l~v~d~~~ 147 (322)
T 2fp8_A 89 --LQNN----QLYIVDCYYHLSVVGSEGGH-------------ATQLATSVDGVPFKWLYAVTVDQ--RTGIVYFTDVST 147 (322)
T ss_dssp --TTTT----EEEEEETTTEEEEECTTCEE-------------CEEEESEETTEECSCEEEEEECT--TTCCEEEEESCS
T ss_pred --CCCC----cEEEEECCCCEEEEeCCCCE-------------EEEecccCCCCcccccceEEEec--CCCEEEEECCcc
Confidence 6 55 55555444557777654211 11111 11111 12456777764 14554444321
Q ss_pred ----------------CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEE-EeecCCeEEEEEeeccccccC
Q 003208 156 ----------------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPL 218 (839)
Q Consensus 156 ----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-sg~~dg~i~vw~~~~~~~~~~ 218 (839)
++.|..+|..+++.......... ...+.+ ++++..|. +-+..+.|.+|++..... .
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~--p~gia~---~~dg~~lyv~d~~~~~I~~~~~~~~~~-~- 220 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV--PGGAEV---SADSSFVLVAEFLSHQIVKYWLEGPKK-G- 220 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESC--CCEEEE---CTTSSEEEEEEGGGTEEEEEESSSTTT-T-
T ss_pred cccccccceehcccCCCceEEEEeCCCCEEEEeccCCcc--CcceEE---CCCCCEEEEEeCCCCeEEEEECCCCcC-C-
Confidence 36688888876654322211000 112222 57776554 445668999999762100 0
Q ss_pred CCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcccC
Q 003208 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIWEVRAE 288 (839)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------d~~i~iwd~~~~ 288 (839)
..+.+.. ..+ ...+++.++|+..++... .+.|..+|...
T Consensus 221 --------------------------~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G- 269 (322)
T 2fp8_A 221 --------------------------TAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG- 269 (322)
T ss_dssp --------------------------CEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-
T ss_pred --------------------------ccceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-
Confidence 1111211 123 788999999986666544 35677777643
Q ss_pred ccCCCCCceeeeceEeecc-ccceEEeEECCC-EEEEEeCCCeEEEEcCC
Q 003208 289 YWKDSDSIEEVGSSVLYGH-NARVWDCCLTDS-FIITAGEDCTCRVWGSD 336 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~-~l~s~~~dg~i~vw~~~ 336 (839)
+. ...+. ...+. -..+..+++.+. +.++...++.|.++++.
T Consensus 270 ~~-----~~~~~--~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 270 NI-----LEVIP--LPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CE-----EEEEE--CCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred CE-----EEEEE--CCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 22 12111 00011 133555555544 44444456777777763
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.57 E-value=0.059 Score=52.08 Aligned_cols=203 Identities=11% Similarity=0.047 Sum_probs=118.5
Q ss_pred eeeeEEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEE-c
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G 95 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~-~ 95 (839)
..+..|++. |+ ++++.++.. ++.|...|.+ |+.++++.........+|++. +++ .++++. +
T Consensus 27 ~~lSGla~~--~~---~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-------~~g----~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWS--AQ---SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-------GDN----QFVISDER 89 (255)
T ss_dssp SCEEEEEEE--TT---TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-------STT----EEEEEETT
T ss_pred cCcceeEEe--CC---CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-------CCC----EEEEEECC
Confidence 458999999 87 344555455 7899999987 888888864322358899988 676 444444 5
Q ss_pred CcEEEEEEeeccCCCCCCCCCccccceeeeE-ec--cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCC---Cce
Q 003208 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SSI 169 (839)
Q Consensus 96 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~---~~~ 169 (839)
++.+.++++..... . . ...... .+ .........+++.| .++.|.++.......+|.+.. ...
T Consensus 90 ~~~l~~~~v~~~~~---i-----~-~~~~~~~~~~~~~~N~g~EGLA~d~---~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 90 DYAIYVISLTPNSE---V-----K-ILKKIKIPLQESPTNCGFEGLAYSR---QDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp TTEEEEEEECTTCC---E-----E-EEEEEECCCSSCCCSSCCEEEEEET---TTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred CCcEEEEEcCCCCe---e-----e-eeeeeccccccccccCCcceEEEeC---CCCEEEEEECcCCceEEEEcccccCCc
Confidence 68899998875320 0 0 001111 11 12345578999999 887777766655555655531 111
Q ss_pred EEEEec------CCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 170 ILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 170 ~~~~~~------~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
+..+.. ....-..++.+. +..+.+++.......|..+|...
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~d--p~tg~lliLS~~s~~L~~~d~~g------------------------------- 204 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFN--QQKNTLLVLSHESRALQEVTLVG------------------------------- 204 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEE--TTTTEEEEEETTTTEEEEECTTC-------------------------------
T ss_pred eeeecchhhccccccCCceeEEEc--CCCCeEEEEECCCCeEEEEcCCC-------------------------------
Confidence 221211 001112334442 34567777777888888888761
Q ss_pred ccceeeEEEe-cC------CCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003208 244 HTAVNLFRLV-GH------EGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (839)
Q Consensus 244 ~~~~~~~~~~-~h------~~~V~~l~~~~~~~~l~s~s~d~~i~iwd 284 (839)
.......+. +. -..--+|+|.++|+ |+..++-+.++.+.
T Consensus 205 -~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 205 -EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp -CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred -CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 111122222 11 13668899999997 44446766555553
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.52 E-value=0.0039 Score=70.98 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=54.8
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEecc-CCCcceEEEEEeeccCCCcEEEEEeC-CCcEEEEecCCCceEEEEec
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~~~~~~~~~~~~~las~~~-d~~i~vwd~~~~~~~~~~~~ 175 (839)
.+.+||..+.. +..+..+. .+.....++++.+ ++.+++.|+. +..+.+||..+.+-...-..
T Consensus 220 ~~~~yd~~t~~-------------w~~~~~~~~~~~~~~~~~~~~~---~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~ 283 (656)
T 1k3i_A 220 LTSSWDPSTGI-------------VSDRTVTVTKHDMFCPGISMDG---NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM 283 (656)
T ss_dssp EEEEECTTTCC-------------BCCCEEEECSCCCSSCEEEECT---TSCEEEECSSSTTCEEEEEGGGTEEEECCCC
T ss_pred EEEEEeCCCCc-------------EEeCcccCCCCCCccccccCCC---CCCEEEeCCCCCCceEEecCcCCceeECCCC
Confidence 56777776543 33333332 2334445677777 8999999884 56899999987643322111
Q ss_pred CCceeEEEEeeccCCccceEEEEee-cC-----CeEEEEEee
Q 003208 176 PERCLLYSMKLWGDNLEALRIASGT-IY-----NEIIVWKVD 211 (839)
Q Consensus 176 ~~~~~~~s~~~~~~~~~~~~l~sg~-~d-----g~i~vw~~~ 211 (839)
+....-.++.. -+++.+++.|+ .+ ..+.+||+.
T Consensus 284 ~~~R~~~s~~~---~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 284 QVARGYQSSAT---MSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCCSSCEEEE---CTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CccccccceEE---ecCCeEEEEeCcccCCcccccceEeCCC
Confidence 11111112222 24677888877 34 568888876
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.43 E-value=0.13 Score=52.06 Aligned_cols=235 Identities=9% Similarity=-0.044 Sum_probs=124.8
Q ss_pred eEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCCC
Q 003208 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQ 115 (839)
Q Consensus 37 ~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~ 115 (839)
+|+.+....|+..|+.+.+....+... ..+.+++|. ++++ .++.+ ...+.|..+++......
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~--~~p~g~~~d-------~~~~---~ly~~D~~~~~I~~~~~~g~~~~----- 65 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHGV----- 65 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSC--SSEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC-----------
T ss_pred EEEEECCCeEEEEECCCcceEehhcCC--CceEEEEEE-------eCCC---EEEEEECCCCcEEEEECCCCCCC-----
Confidence 455556677999999887665555433 248899998 5432 34444 45688998887641100
Q ss_pred CccccceeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-cc
Q 003208 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EA 193 (839)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~ 193 (839)
......+...-....++++.+ .+. +.++-...+.|.+.++........+..... .-..+.+ ++ .+
T Consensus 66 ------~~~~~~~~~~~~~p~glavd~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-~P~~iav---dp~~g 132 (316)
T 1ijq_A 66 ------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-KPRAIVV---DPVHG 132 (316)
T ss_dssp --------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-CEEEEEE---ETTTT
T ss_pred ------cccEEEEeCCCCCcCEEEEee---cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC-CcceEEe---CCCCC
Confidence 001111222223457888886 444 444545678899999865433222221111 1122333 24 33
Q ss_pred eEEEEeecC-CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEcCCCCEE
Q 003208 194 LRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 194 ~~l~sg~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l 271 (839)
.++++.... +.|...++. +.....+ ...-....+|+++|++..|
T Consensus 133 ~ly~~d~~~~~~I~~~~~d----------------------------------G~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp EEEEEECSSSCEEEEEETT----------------------------------SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEEEEccCCCCeEEEEcCC----------------------------------CCCeEEEEECCCCCceEEEEeccCCEE
Confidence 333333222 567666654 1111122 2233567899999887766
Q ss_pred EEEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEe
Q 003208 272 VSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 272 ~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~ 343 (839)
+.+. ..+.|..+|+..... +.+. ...........+++. +..+++-...+.|..++. +++.+..+
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~------~~~~--~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEECCCCeEEEEecCCCce------EEEe--ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 5554 567899999875332 2110 111112334556655 444455556677777776 56544444
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.41 E-value=0.11 Score=52.27 Aligned_cols=210 Identities=10% Similarity=-0.033 Sum_probs=110.8
Q ss_pred eeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec
Q 003208 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~ 201 (839)
.+.+..+... ....+++|.+ ++.++++-...+.|..||.... ....+.... ....+.+ .+++.++++...
T Consensus 22 ~~~~~~~p~~-~~pegia~~~---~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~--~p~gia~---~~dG~l~vad~~ 91 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAP---DGTIFVTNHEVGEIVSITPDGN-QQIHATVEG--KVSGLAF---TSNGDLVATGWN 91 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECT---TSCEEEEETTTTEEEEECTTCC-EEEEEECSS--EEEEEEE---CTTSCEEEEEEC
T ss_pred ceEeEeCCCC-CCcceEEECC---CCCEEEEeCCCCeEEEECCCCc-eEEEEeCCC--CceeEEE---cCCCcEEEEecc
Confidence 3445555433 5678899998 8887777667889999998653 333333222 2334444 466776555433
Q ss_pred CC--eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003208 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (839)
Q Consensus 202 dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~ 279 (839)
.+ .|..++...++ ...+..+ ........++..+++..+++-..++.
T Consensus 92 ~~~~~v~~~d~~~g~-------------------------------~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~ 139 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGT-------------------------------VETLLTL-PDAIFLNGITPLSDTQYLTADSYRGA 139 (306)
T ss_dssp TTSCEEEEEECTTSC-------------------------------EEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTE
T ss_pred CCcceEEEEcCCCCe-------------------------------EEEEEeC-CCccccCcccccCCCcEEEEECCCCe
Confidence 22 35555544111 1111111 11222345555555544555446788
Q ss_pred EEEEEcccCccCCCCCceeeece----EeeccccceEEeEECCCEE-EEEeCCCeEEEEcCC--Cce--EEEeecccCCc
Q 003208 280 ARIWEVRAEYWKDSDSIEEVGSS----VLYGHNARVWDCCLTDSFI-ITAGEDCTCRVWGSD--GKQ--LKMIKEHIGRG 350 (839)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~l-~s~~~dg~i~vw~~~--~~~--~~~~~~h~~~~ 350 (839)
|..+|....... +...... .....-.....+...++.+ ++-...+.|.++++. ++. ...+... . .
T Consensus 140 i~~~d~~~~~~~----v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~ 213 (306)
T 2p4o_A 140 IWLIDVVQPSGS----IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-N 213 (306)
T ss_dssp EEEEETTTTEEE----EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-C
T ss_pred EEEEeCCCCcEe----EEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-C
Confidence 888887643210 0000000 0001111233443345544 555567889999984 321 1112111 1 2
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 351 i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
...++++++|+++++....+.|.+++..+
T Consensus 214 P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 214 IDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp CSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 45688999998877777778899998754
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.40 E-value=0.069 Score=55.92 Aligned_cols=223 Identities=9% Similarity=-0.090 Sum_probs=122.1
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEE-EEEeCCCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-as~~~d~~i~vwd~~~~ 167 (839)
.+|..+....|+.+++.... .. ..+.. ...+..++|.+ ....| .+-...+.|..+++...
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~-------------~~--~~~~~-~~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSE-------------YT--LLLNN-LENAIALDFHH---RRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp CEEEEECBSCEEEECTTSCC-------------CE--EEECS-CSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred ceeEeecCccceeeccCCCc-------------EE--EEecC-CCccEEEEEec---CCCeEEEEeCCCCcEEEEecCCC
Confidence 44555556677777765322 11 11222 24578999997 55544 45456788999998765
Q ss_pred ceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccce
Q 003208 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (839)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (839)
.....+...... ...+++ ....+.+.++-...+.|.+.++. ...
T Consensus 149 ~~~~~~~~~~~~-p~glav--d~~~g~lY~~d~~~~~I~~~~~d---------------------------------g~~ 192 (386)
T 3v65_B 149 NVEEVVSTGLES-PGGLAV--DWVHDKLYWTDSGTSRIEVANLD---------------------------------GAH 192 (386)
T ss_dssp CEEEEECSSCSC-CCCEEE--ETTTTEEEEEETTTTEEEECBTT---------------------------------SCS
T ss_pred CcEEEEeCCCCC-ccEEEE--EeCCCeEEEEcCCCCeEEEEeCC---------------------------------CCc
Confidence 433332211100 011111 01234455555555667666654 111
Q ss_pred eeEEEecCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEE-E
Q 003208 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D-RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-I 322 (839)
Q Consensus 248 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~ 322 (839)
....+...-.....|+++|.+..|+.+.. . +.|...++..... +. .....-.....++++ +..| +
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~----~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RI----IADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSCEEEEEEEGGGTEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------EE----EEECCCCCeeeEEEeCCCCEEEE
Confidence 11122333456789999997766655543 3 6788887765433 10 111223346778886 4444 4
Q ss_pred EEeCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 323 TAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 323 s~~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+-...+.|..+++++.....+..........|++ .++.++++-...+.|..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence 4456678999999665444332211224667888 44556666666788888873
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.39 E-value=0.1 Score=53.64 Aligned_cols=240 Identities=10% Similarity=-0.047 Sum_probs=127.1
Q ss_pred eeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcE
Q 003208 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKR 98 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 98 (839)
.+|.+.. ++ .+|+.+....|+..++........+... ..+.+++|. +..+ .++.+ ...+.
T Consensus 36 ~~C~~~~--~~-----~~ll~~~~~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d-------~~~~---~ly~~D~~~~~ 96 (349)
T 3v64_C 36 RSCKALG--PE-----PVLLFANRIDIRQVLPHRSEYTLLLNNL--ENAIALDFH-------HRRE---LVFWSDVTLDR 96 (349)
T ss_dssp SCEEESS--SC-----CEEEEECBSCEEEECTTSCCEEEEECSC--SCEEEEEEE-------TTTT---EEEEEETTTTE
T ss_pred Ccccccc--cC-----ceeEeecccceEEEeCCCCeeEEeecCC--CceEEEEEe-------cccc---EEEEEeccCCc
Confidence 4555544 33 4555566667888888765443333332 247899998 4432 34433 35688
Q ss_pred EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCC
Q 003208 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 99 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
|..++++... .+. .+.........+++.+ .+. +.++-...+.|.+.++........+....
T Consensus 97 I~r~~~~g~~-------------~~~--~~~~~~~~p~glavd~---~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l 158 (349)
T 3v64_C 97 ILRANLNGSN-------------VEE--VVSTGLESPGGLAVDW---VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 158 (349)
T ss_dssp EEEEETTSCS-------------CEE--EECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECTTC
T ss_pred eEEEecCCCC-------------ceE--EEeCCCCCccEEEEec---CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC
Confidence 8888776422 111 1111123456788886 544 44555557789999986543332222111
Q ss_pred ceeEEEEeeccCCc-cceEEEEeecC-CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ec
Q 003208 178 RCLLYSMKLWGDNL-EALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VG 254 (839)
Q Consensus 178 ~~~~~s~~~~~~~~-~~~~l~sg~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 254 (839)
..-..+.+ ++ .+.+.++-... +.|...++. +.....+ ..
T Consensus 159 -~~P~~iav---dp~~g~ly~td~~~~~~I~r~~~d----------------------------------G~~~~~~~~~ 200 (349)
T 3v64_C 159 -EKPRAIAL---HPMEGTIYWTDWGNTPRIEASSMD----------------------------------GSGRRIIADT 200 (349)
T ss_dssp -SCEEEEEE---ETTTTEEEEEECSSSCEEEEEETT----------------------------------SCSCEESCCS
T ss_pred -CCcceEEE---ecCcCeEEEeccCCCCEEEEEeCC----------------------------------CCCcEEEEEC
Confidence 11122333 23 34444444334 667766655 1111111 12
Q ss_pred CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEE
Q 003208 255 HEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV 332 (839)
Q Consensus 255 h~~~V~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~v 332 (839)
.-....+|+++|++..|+.+ ...+.|..+|+..... +. ...........+++. +...++-...+.|..
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~------~~----~~~~~~~~P~giav~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------KA----VISQGLPHPFAITVFEDSLYWTDWHTKSINS 270 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EE----EECSSCSSEEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce------EE----EEeCCCCCceEEEEECCEEEEecCCCCeEEE
Confidence 23467899999877666555 4567799999875432 11 111222334555555 444445455667777
Q ss_pred EcC-CCceEEEee
Q 003208 333 WGS-DGKQLKMIK 344 (839)
Q Consensus 333 w~~-~~~~~~~~~ 344 (839)
++. +|+.+..+.
T Consensus 271 ~~~~~G~~~~~i~ 283 (349)
T 3v64_C 271 ANKFTGKNQEIIR 283 (349)
T ss_dssp EETTTCCSCEEEE
T ss_pred EEccCCCccEEec
Confidence 764 555444443
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.34 E-value=0.12 Score=54.10 Aligned_cols=232 Identities=9% Similarity=-0.046 Sum_probs=124.3
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~ 114 (839)
.+|+.+....|+.+++..+.....+.... .+.+++|. +.++ .++.+ ...+.|..++++...
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~--~~~gl~~d-------~~~~---~ly~~D~~~~~I~r~~~~g~~------ 149 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLE--NAIALDFH-------HRRE---LVFWSDVTLDRILRANLNGSN------ 149 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEECSCS--CEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCC------
T ss_pred ceeEeecCccceeeccCCCcEEEEecCCC--ccEEEEEe-------cCCC---eEEEEeCCCCcEEEEecCCCC------
Confidence 46666666788999987665444444332 48899998 5432 44444 356888888876321
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcE-EEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-c
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~-las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~ 192 (839)
.+ ..+.........+++.+ .+.. .++-...+.|.+.++........+.... ..-..+.+ ++ .
T Consensus 150 -------~~--~~~~~~~~~p~glavd~---~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-~~P~giav---dp~~ 213 (386)
T 3v65_B 150 -------VE--EVVSTGLESPGGLAVDW---VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-EKPRAIAL---HPME 213 (386)
T ss_dssp -------EE--EEECSSCSCCCCEEEET---TTTEEEEEETTTTEEEECBTTSCSCEEEECSSC-SCEEEEEE---ETTT
T ss_pred -------cE--EEEeCCCCCccEEEEEe---CCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC-CCCcEEEE---EcCC
Confidence 11 11111122346788886 5444 4455556788888886543322222211 11122322 23 3
Q ss_pred ceEEEEeecC-CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 193 ~~~l~sg~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
+.+.++-... +.|...++. ...........-....+|+++|++..|
T Consensus 214 g~ly~td~~~~~~I~r~~~d---------------------------------G~~~~~~~~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMD---------------------------------GSGRRIIADTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp TEEEEEECSSSCEEEEEETT---------------------------------SCSCEEEECSSCSCEEEEEEEGGGTEE
T ss_pred CeEEEeccCCCCEEEEEeCC---------------------------------CCCcEEEEECCCCCeeeEEEeCCCCEE
Confidence 3333443333 566666654 111111122234567899999876666
Q ss_pred EEE-eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEee
Q 003208 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 272 ~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
+.+ +..+.|..+|+..... +. ...........+++. +..+++-...+.|..++. +|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~------~~----~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHR------KA----VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTTEEEEECTTSCSC------EE----EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECCCCEEEEEeCCCCee------EE----EEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 554 4567788998865432 11 121222344556555 445555556677887774 665555554
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.30 E-value=0.14 Score=52.69 Aligned_cols=192 Identities=10% Similarity=-0.043 Sum_probs=110.1
Q ss_pred cceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccceEEEEeecCCeEEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~ 210 (839)
..+.+++|.+ ....|. +-...+.|..+++........+.... ... .+++ ....+.+.++-...+.|.+.++
T Consensus 73 ~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~--glav--d~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 73 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG--GLAV--DWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC--EEEE--ETTTTEEEEEETTTTEEEEEET
T ss_pred CceEEEEEec---cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc--EEEE--ecCCCeEEEEcCCCCeEEEEcC
Confidence 3478999997 555554 44567889999987654333332211 111 2222 0134555566556678888887
Q ss_pred eccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEEcccC
Q 003208 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DD-RSARIWEVRAE 288 (839)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d-~~i~iwd~~~~ 288 (839)
. .......+...-.....|+++|.+..|+.+. .. +.|...+++..
T Consensus 146 d---------------------------------G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 146 D---------------------------------GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp T---------------------------------SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred C---------------------------------CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 6 1111112223345678999999666655544 44 67888887654
Q ss_pred ccCCCCCceeeeceEe-eccccceEEeEEC--CCEEE-EEeCCCeEEEEcCCCceEEEee-cccCCceEEEEEccCCCEE
Q 003208 289 YWKDSDSIEEVGSSVL-YGHNARVWDCCLT--DSFII-TAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLL 363 (839)
Q Consensus 289 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~-~h~~~~i~~~~~~~~~~~l 363 (839)
.. + .+ ...-.....++++ +..|+ +-...+.|..++++|.....+. .... ....+++ .++.++
T Consensus 193 ~~------~-----~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav-~~~~ly 259 (349)
T 3v64_C 193 GR------R-----IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITV-FEDSLY 259 (349)
T ss_dssp SC------E-----ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEE-ETTEEE
T ss_pred Cc------E-----EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEE-ECCEEE
Confidence 32 1 11 1223346778886 44554 4455678999998665444332 2222 3567887 345556
Q ss_pred EEEeCCCcEEEEec
Q 003208 364 VTAGFDSAIKVHQF 377 (839)
Q Consensus 364 ~t~~~dg~i~iw~~ 377 (839)
++-...+.|..++.
T Consensus 260 ~td~~~~~V~~~~~ 273 (349)
T 3v64_C 260 WTDWHTKSINSANK 273 (349)
T ss_dssp EEETTTTEEEEEET
T ss_pred EecCCCCeEEEEEc
Confidence 66566778887773
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.26 E-value=0.14 Score=51.71 Aligned_cols=234 Identities=14% Similarity=-0.026 Sum_probs=121.9
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~ 114 (839)
.+|+.+....|+..++.......++.......+.+++|. +..+ .++.+ ...+.|..+++.....
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d-------~~~~---~lyw~D~~~~~I~r~~~~g~~~----- 69 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFV-------FSHG---LIYWSDVSEEAIKRTEFNKTES----- 69 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEE-------GGGT---EEEEEETTTTEEEEEETTSSSC-----
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEE-------eCCC---EEEEEECCCCcEEEEEccCCCc-----
Confidence 466666677899999987631122221112247788998 4322 34333 4568888888764210
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccce
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 194 (839)
.+.+ +..--....++++.+ ..+.+.++-...+.|.++++........+.... ..-..+.+ .+.+.
T Consensus 70 -------~~~~--~~~~l~~p~glavd~--~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~-~~P~giav---dp~~g 134 (318)
T 3sov_A 70 -------VQNV--VVSGLLSPDGLACDW--LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-DQPRAIAL---DPSSG 134 (318)
T ss_dssp -------CCEE--EEECCSCCCEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SSEEEEEE---EGGGT
T ss_pred -------eEEE--EcCCCCCccEEEEEc--CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC-CCccEEEE---eCCCC
Confidence 0111 111112456788876 134444555567789999986543222221111 11122322 23333
Q ss_pred EEEEee--cCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEcCCCCEE
Q 003208 195 RIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 195 ~l~sg~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l 271 (839)
.|+... ..+.|...++. +.....+ ...-....+|+++|++..|
T Consensus 135 ~ly~td~~~~~~I~r~~~d----------------------------------G~~~~~~~~~~l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 135 FMYWTDWGEVPKIERAGMD----------------------------------GSSRFIIINSEIYWPNGLTLDYEEQKL 180 (318)
T ss_dssp EEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEEEEecCCCCEEEEEEcC----------------------------------CCCeEEEEECCCCCccEEEEeccCCEE
Confidence 333333 24666666654 1111112 2223467899999977666
Q ss_pred EEE-eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEe
Q 003208 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 272 ~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~ 343 (839)
+.+ +..+.|..+|++.... +. ...+.......+++. +..+.+-...+.|..++. +|+....+
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~------~~----~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDGTNR------QA----VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEETTTTEEEEEETTSCSC------EE----EECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEECCCCEEEEEcCCCCce------EE----EecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 555 4567899999875432 11 112223344556655 444455555677777777 56554444
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.19 E-value=0.25 Score=50.25 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=84.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEE
Q 003208 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV 332 (839)
Q Consensus 254 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~v 332 (839)
++...+..+.+.|++..++.+...+..+-+|-. +.. .+. ........+..+.+. +..++.++.+|.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t-----W~~----~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~ 229 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA-----WEP----HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAF 229 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS-----CEE----EECCSSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc-----eeE----CCCCCCCccceeEECCCCCEEEEeCCceEEE
Confidence 445678899999988877666443333333321 111 111 112344567788886 445666777888887
Q ss_pred EcCC-CceEEEeecc---cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEe-ecCC
Q 003208 333 WGSD-GKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI-KIPN 407 (839)
Q Consensus 333 w~~~-~~~~~~~~~h---~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 407 (839)
.+.+ ++.-..+... ....+..+++.+++.+++++ .+|.+ ++..++. +.|.. ..+.
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG------------------~tW~~~~~~~ 289 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG------------------QTWQQDVDVK 289 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTT------------------SSCEECGGGT
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCC------------------cccEEcCccC
Confidence 7432 3322222211 11248889998877766654 46666 3333221 01110 0000
Q ss_pred CccceeeccCCCcceEEEEEecCCeEEEEeccceEEEE
Q 003208 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (839)
Q Consensus 408 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~ 445 (839)
.....+..+.|.+++.+++.+.+|.++.+
T Consensus 290 ---------~~~~~~~~v~~~~~~~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 290 ---------KVPSNFYKILFFSPDQGFILGQKGILLRY 318 (327)
T ss_dssp ---------TSSSCCCEEEEEETTEEEEECSTTEEEEE
T ss_pred ---------CCCCCeEEEEEECCCceEEEcCCceEEEE
Confidence 00123567778777888888999988654
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.16 E-value=0.21 Score=52.96 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=102.1
Q ss_pred CCcceEEEEEeeccCCCcEEEEEeC-CC----cEEEEecCCCce-EEEEecCCceeEEEEeeccCCc-cceEEEEeecCC
Q 003208 131 LSHWVFDVCFLKVCNGNRSLAIGCS-DN----SIRVWDISNSSI-ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYN 203 (839)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~las~~~-d~----~i~vwd~~~~~~-~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg 203 (839)
.......+++++ ++++|+.+.. .+ .+.+.+...... ...+..... ...+.+ ++ ++.++++-...+
T Consensus 177 ~~~~P~~ia~d~---~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~--p~giav---dp~~g~lyv~d~~~~ 248 (430)
T 3tc9_A 177 GLSKVRTICWTH---EADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQN--CNGAET---HPINGELYFNSWNAG 248 (430)
T ss_dssp CCSCEEEEEECT---TSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSS--CCCEEE---CTTTCCEEEEETTTT
T ss_pred CCCCcceEEEeC---CCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCC--ceEEEE---eCCCCEEEEEECCCC
Confidence 335578999999 9986655543 22 233344322111 112211110 111222 35 566666666678
Q ss_pred eEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccccee--eEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcE
Q 003208 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN--LFRLVGHEGSIFRIEWSSCGSKLVS-VSDDRSA 280 (839)
Q Consensus 204 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s-~s~d~~i 280 (839)
.|..++.. .... +... +.......|+|+|++++|+. -...+.|
T Consensus 249 ~V~~~~~~---------------------------------~~~~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 249 QVFRYDFT---------------------------------TQETTPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp EEEEEETT---------------------------------TTEEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEEECC---------------------------------CCcEEEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 88888876 2221 1111 12245789999999995544 4567789
Q ss_pred EEEEcccCccCCCCCceee-eceEeecc---------ccceE-EeEEC----------CCEEEEEeCCCeEEEEcCCCce
Q 003208 281 RIWEVRAEYWKDSDSIEEV-GSSVLYGH---------NARVW-DCCLT----------DSFIITAGEDCTCRVWGSDGKQ 339 (839)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~-~~~~~~~h---------~~~v~-~~~~~----------~~~l~s~~~dg~i~vw~~~~~~ 339 (839)
..++.+....... ....+ +.....+. -.... .++.. +.+.++=...+.|+.++.+|+.
T Consensus 295 ~~~~~d~~~~~~~-~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLT-TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRV 373 (430)
T ss_dssp EEEEEETTTTEEC-CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEE
T ss_pred EEEeCCccccccc-ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcE
Confidence 9988764211000 00000 00000000 01122 33331 2344444556788888876644
Q ss_pred EEEeec----c----cC--------CceEEEEEccC-CCEEEEEeCCCcEEEEec
Q 003208 340 LKMIKE----H----IG--------RGIWRCLYDSL-SSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 340 ~~~~~~----h----~~--------~~i~~~~~~~~-~~~l~t~~~dg~i~iw~~ 377 (839)
...... . .+ .....++++|+ +.++++-.....|+.+++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 333211 0 00 13678999984 555555555678887775
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.04 E-value=0.41 Score=50.22 Aligned_cols=222 Identities=7% Similarity=-0.091 Sum_probs=123.7
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEE-eCCCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~-~~d~~i~vwd~~~~ 167 (839)
.++..+....|+..+++... ...+ + .....+.+++|++ ....|.-+ ...+.|+.+++...
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~-------------~~~~--~-~~~~~~~~l~~d~---~~~~lywsD~~~~~I~~~~~~g~ 144 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSE-------------YTSL--I-PNLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRA 144 (400)
T ss_dssp CEEEEEETTEEEEECTTSCS-------------CEEE--E-CSCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceeEEeccceeEEEccCCcc-------------eeEe--c-cccCcceEEeeee---ccCceEEEecCCCeEEEEEcccC
Confidence 45666667888888876432 1111 2 2335678999998 65555544 45678888888652
Q ss_pred c----eEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccc
Q 003208 168 S----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (839)
Q Consensus 168 ~----~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (839)
. ....+..... ....+++- ...+.+.++-...+.|.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~-~p~glavD--~~~~~lY~~d~~~~~I~~~~~~-------------------------------- 189 (400)
T 3p5b_L 145 HGVSSYDTVISRDIQ-APDGLAVD--WIHSNIYWTDSVLGTVSVADTK-------------------------------- 189 (400)
T ss_dssp ---CCCEEEECSSCS-CEEEEEEE--TTTTEEEEEETTTTEEEEECTT--------------------------------
T ss_pred CCCCcceEEEeCCCC-CcccEEEE--ecCCceEEEECCCCeEEEEeCC--------------------------------
Confidence 1 2222221111 11222221 1245555555556777777765
Q ss_pred ccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CC
Q 003208 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (839)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~ 319 (839)
.......+...-.....|+++|.+.+|+.+.. .+.|...+++.... + ......-.....++++ +.
T Consensus 190 -g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~----~~~~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 190 -GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------Y----SLVTENIQWPNGITLDLLSG 258 (400)
T ss_dssp -TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------E----EEECSSCSCEEEEEEETTTT
T ss_pred -CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------E----EEEECCCCceEEEEEEeCCC
Confidence 22222222333456789999997766665542 36788888765433 1 0112223456778887 45
Q ss_pred EEEEE-eCCCeEEEEcCCCceEEEeecc---cCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 320 FIITA-GEDCTCRVWGSDGKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 320 ~l~s~-~~dg~i~vw~~~~~~~~~~~~h---~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.|+.+ ...+.|..++++|.....+... .. ....+++. .+.++++-...+.|..++.
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~-~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-SEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-CCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 55555 4567899999966554444321 22 35577773 3455666666778888874
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.95 E-value=0.36 Score=51.25 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEeec---------cccceEEeEE---------C-
Q 003208 258 SIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---------HNARVWDCCL---------T- 317 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~---------~- 317 (839)
.-..|+|+|++++|+.+ ...+.|+.++...............+.....+ .-.....+++ .
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 34579999999855554 45678988887532110000000000000000 1123566787 4
Q ss_pred -CCEEEEEeCCCeEEEEcCCCceEEEeeccc-----------------CCceEEEEEc-cCCCEEEEEeCCCcEEEEec
Q 003208 318 -DSFIITAGEDCTCRVWGSDGKQLKMIKEHI-----------------GRGIWRCLYD-SLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 318 -~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~-----------------~~~i~~~~~~-~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.+.++-...+.|+.++.+|... ++.+.. -.....|+++ +++.++++=.....|+.+++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEEEEEEETTTTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEECCCCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 34555556678899998877443 332210 0125788998 56666655556678887775
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.94 E-value=0.51 Score=49.44 Aligned_cols=240 Identities=8% Similarity=-0.068 Sum_probs=129.5
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~ 113 (839)
..+|+......|+..++........+... ..+.+|+|. +.++ .++.+ ...+.|+.+++......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~l~~d-------~~~~---~lywsD~~~~~I~~~~~~g~~~~--- 147 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHGV--- 147 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEECSC--SCEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC---------
T ss_pred cceeEEeccceeEEEccCCcceeEecccc--CcceEEeee-------eccC---ceEEEecCCCeEEEEEcccCCCC---
Confidence 35777777789999998876544444432 358899998 5432 34433 45688888887631100
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
......+.........+++.+ .+. +.++-...+.|.+.++........+..... .-..+++ ++.
T Consensus 148 --------~~~~~~~~~~~~~p~glavD~---~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~-~P~~iav---dp~ 212 (400)
T 3p5b_L 148 --------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-KPRAIVV---DPV 212 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEET---TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC-CEEEEEE---ETT
T ss_pred --------CcceEEEeCCCCCcccEEEEe---cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC-CcceEEE---ecc
Confidence 011112222234577888886 444 444555677899999875544333322111 1122322 233
Q ss_pred -ceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCE
Q 003208 193 -ALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (839)
Q Consensus 193 -~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 270 (839)
+.+..+- +..+.|...++. ...........-....+|++++++..
T Consensus 213 ~g~ly~td~~~~~~I~~~~~d---------------------------------G~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 213 HGFMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TTEEEEEECSSSCCEEEEETT---------------------------------SCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred cCeEEEEeCCCCCEEEEEeCC---------------------------------CCccEEEEECCCCceEEEEEEeCCCE
Confidence 3333332 123566666654 11111112233357899999988777
Q ss_pred EEEEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEeec
Q 003208 271 LVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (839)
Q Consensus 271 l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~~ 345 (839)
|+.+. ..+.|..+|++.... +.+. ...+.......+++. +..+++-...+.|..++. +|+.+..+..
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~------~~~~--~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCC------EEEE--ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCcc------EEEE--eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 76654 567899999876433 2110 111122334455555 445556666678888885 6666655543
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.90 E-value=0.045 Score=63.15 Aligned_cols=198 Identities=11% Similarity=0.005 Sum_probs=105.9
Q ss_pred CCCc-ceEEEEEe-eccCCCcEEEEEeC-C----CcEEEEecCCC-ceEEE-EecCCceeEEEEeeccCCccceEEEEee
Q 003208 130 RLSH-WVFDVCFL-KVCNGNRSLAIGCS-D----NSIRVWDISNS-SIILE-VHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 130 ~h~~-~I~~~~~~-~~~~~~~~las~~~-d----~~i~vwd~~~~-~~~~~-~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
+|.- .+...+|+ | ++++||-+.. + ..|+++|+.++ +.+.. +..... ++.+ ++++..|+...
T Consensus 170 ~~~~~~~~~~~~S~P---DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~----~~~W---spDg~~l~y~~ 239 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPP---EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNG----EIVW---GPDHTSLFYVT 239 (751)
T ss_dssp TCSCCEEEEEEECTT---TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECS----CCEE---CSSTTEEEEEE
T ss_pred CCCeEEEeeeEecCC---CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCcee----eEEE---ecCCCEEEEEE
Confidence 4543 68889999 9 9998875433 2 25999999988 63211 111111 2222 57887777665
Q ss_pred cC-----CeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe-cCCCCeEEEEEcCCCCEEEEE
Q 003208 201 IY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSV 274 (839)
Q Consensus 201 ~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~ 274 (839)
.+ ..|+++++.++ .......+. ........+.|+|||++|+..
T Consensus 240 ~d~~~~~~~v~~~~lgt~-------------------------------~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~ 288 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKL-------------------------------QSEDVCLYEEHNPLFSAFMYKAADTNTLCIG 288 (751)
T ss_dssp ECTTCCEEEEEEEETTSC-------------------------------GGGCEEEEECCCTTCEEEEEECTTSSEEEEE
T ss_pred ECCCCCCCEEEEEECCCC-------------------------------chhcEEEEecCCCceEEEEEECCCCCEEEEE
Confidence 54 24666665410 001111222 223456788999999988776
Q ss_pred eC---CCcEEEEEcccCccCCCCCc--eeeeceEeeccccceEEeEEC-CCEEE-EEeCC----CeEEEEcCCC-ceEEE
Q 003208 275 SD---DRSARIWEVRAEYWKDSDSI--EEVGSSVLYGHNARVWDCCLT-DSFII-TAGED----CTCRVWGSDG-KQLKM 342 (839)
Q Consensus 275 s~---d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~-~~~l~-s~~~d----g~i~vw~~~~-~~~~~ 342 (839)
+. ...|.++|+.++... . +. .........+++.|+ ++.|+ ....+ ..|..+++.. .....
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~----~~~~~----l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 289 SQSPETAEVHLLDLRKGNAH----NTLEI----VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp EECSSCEEEEEEESSSCTTC----CCEEE----SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCC
T ss_pred ecCCCCceEEEEECCCCCCC----ceeEE----eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccccee
Confidence 53 346888888764210 1 11 122234556667654 55444 44333 3566666642 22222
Q ss_pred -eecccCC-ceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 343 -IKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 343 -~~~h~~~-~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+..+... .+..+.+. .+.++++...++..++|-+
T Consensus 361 ~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 361 VLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp EEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred eEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 2223321 24455554 2346667777886665543
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.89 E-value=0.45 Score=48.02 Aligned_cols=180 Identities=9% Similarity=-0.030 Sum_probs=103.5
Q ss_pred CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 156 d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
.+.|+..|+.+.+....+..... ...+.+ ++ ++.+.++-...+.|..+++.....
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~--p~g~~~---d~~~~~ly~~D~~~~~I~~~~~~g~~~------------------- 64 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRN--VVALDT---EVASNRIYWSDLSQRMICSTQLDRAHG------------------- 64 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSS--EEEEEE---ETTTTEEEEEETTTTEEEEEEC------------------------
T ss_pred CCeEEEEECCCcceEehhcCCCc--eEEEEE---EeCCCEEEEEECCCCcEEEEECCCCCC-------------------
Confidence 45788899887665544432222 233443 23 344555555668888888761000
Q ss_pred eeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEE
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 313 (839)
.......+...-....++++++.+..| ++-...+.|.+.++..... +. ...........
T Consensus 65 ----------~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~~----~~~~~~~~P~~ 124 (316)
T 1ijq_A 65 ----------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KT----LFRENGSKPRA 124 (316)
T ss_dssp -------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EE----EEECTTCCEEE
T ss_pred ----------CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce------EE----EEECCCCCcce
Confidence 011111122223456789998755555 4556678899999875432 11 12222345677
Q ss_pred eEEC--CCEEEEEeC-C-CeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003208 314 CCLT--DSFIITAGE-D-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (839)
Q Consensus 314 ~~~~--~~~l~s~~~-d-g~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~-~dg~i~iw~~~~ 379 (839)
+++. +..++.+.. . +.|...+++|.....+..........+++++++..|+.+. ..+.|..+++++
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 8886 455554443 2 6888888877665555322222467899998776665555 467899999865
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.86 E-value=0.48 Score=47.82 Aligned_cols=223 Identities=10% Similarity=-0.072 Sum_probs=124.0
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEE-EEEeCCCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l-as~~~d~~i~vwd~~~~ 167 (839)
.+|..+....|+.++++.... .. ..++..+ ....+++|.+ ....| .+-...+.|..+++...
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~--~~--------~~~~~~~----~~~~~ld~d~---~~~~lyw~D~~~~~I~r~~~~g~ 67 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKE--NA--------TIVVGGL----EDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKT 67 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTS--CC--------EEEEEEE----EEEEEEEEEG---GGTEEEEEETTTTEEEEEETTSS
T ss_pred cEEEEEccCeEEEEECCCCce--EE--------EEEecCC----CccEEEEEEe---CCCEEEEEECCCCcEEEEEccCC
Confidence 455666678888888874320 00 1111111 2467889987 54444 45455778999988765
Q ss_pred ceE-EEEecC-CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeeccccc
Q 003208 168 SII-LEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (839)
Q Consensus 168 ~~~-~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (839)
... ..+... ....-..+. ...+.+.++-...+.|.++++. .
T Consensus 68 ~~~~~~~~~~l~~p~glavd----~~~g~ly~~d~~~~~I~~~~~d---------------------------------G 110 (318)
T 3sov_A 68 ESVQNVVVSGLLSPDGLACD----WLGEKLYWTDSETNRIEVSNLD---------------------------------G 110 (318)
T ss_dssp SCCCEEEEECCSCCCEEEEE----TTTTEEEEEETTTTEEEEEETT---------------------------------S
T ss_pred CceEEEEcCCCCCccEEEEE----cCCCeEEEEECCCCEEEEEECC---------------------------------C
Confidence 321 111111 111111121 1345555665566788888876 1
Q ss_pred ceeeEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEE
Q 003208 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (839)
Q Consensus 246 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l 321 (839)
......+.........|+++|.+..|+.+.. .+.|...+++.... +. .....-.....++++ +..|
T Consensus 111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~----~~~~~l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FI----IINSEIYWPNGLTLDYEEQKL 180 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSCEEEEEEETTTTEE
T ss_pred CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------EE----EEECCCCCccEEEEeccCCEE
Confidence 1111112234456789999997666666553 56788887765332 11 111222345778887 4555
Q ss_pred EEE-eCCCeEEEEcCCCceEEEeec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 322 ITA-GEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 322 ~s~-~~dg~i~vw~~~~~~~~~~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
+.+ ...+.|..++++|.....+.. ... ....+++.. +.++++-...+.|..++.
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 444 556889999996654444432 223 456778753 355566556788888887
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.69 E-value=0.6 Score=46.94 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=112.6
Q ss_pred eeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC-ceeEEEEeeccCCccce---EEEEeec---CCeEEEEEeecc
Q 003208 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEAL---RIASGTI---YNEIIVWKVDWE 213 (839)
Q Consensus 141 ~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~---~l~sg~~---dg~i~vw~~~~~ 213 (839)
+|.++...+++.....+-+.+||+ +++.+..+.... ..+-.--.+ ...+. ++++... +++|.+|++..
T Consensus 34 ~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~---~l~g~~~dla~as~R~~~~n~l~vf~iDp- 108 (355)
T 3amr_A 34 DPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDF---PLNGKKVDIAAASNRSEGKNTIEIYAIDG- 108 (355)
T ss_dssp CSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEE---EETTEEEEEEEEEECSTTCCEEEEEEECT-
T ss_pred CCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEeccc---ccCCceEeEEEEeCCCCCCCeEEEEEECC-
Confidence 343334556666667788999999 888888876422 211111111 11122 2333333 57899998750
Q ss_pred ccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEe------cCC-CCeEEEEE--cCC-CC-EEEEEeCCCcEEE
Q 003208 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHE-GSIFRIEW--SSC-GS-KLVSVSDDRSARI 282 (839)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~-~~V~~l~~--~~~-~~-~l~s~s~d~~i~i 282 (839)
....+..+. +.. ..+..+++ +|. ++ +++....++.+..
T Consensus 109 -------------------------------~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q 157 (355)
T 3amr_A 109 -------------------------------KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQ 157 (355)
T ss_dssp -------------------------------TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEE
T ss_pred -------------------------------CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEE
Confidence 011122221 111 56777887 774 43 6888889999999
Q ss_pred EEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEEEEeCCCeEEEEcCC------CceEEEee-cccCCceEE
Q 003208 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD------GKQLKMIK-EHIGRGIWR 353 (839)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~------~~~~~~~~-~h~~~~i~~ 353 (839)
|++...... ....+.+. . ....+.+..|... ...|+.+-++.-|..++.. ++.+..+. ++-...+..
T Consensus 158 ~~l~~~~~g-~~~~~lVR--~-f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEG 233 (355)
T 3amr_A 158 YELKADKNG-YISGKKVR--A-FKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEG 233 (355)
T ss_dssp EEEEECTTS-CEEEEEEE--E-EECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEE
T ss_pred EEEEeCCCC-cccceEEE--E-ecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcce
Confidence 998542110 00012222 2 2224567777776 4799999999776666642 23444442 222224777
Q ss_pred EEE--ccCCC-EEEEEe-CCCcEEEEecC
Q 003208 354 CLY--DSLSS-LLVTAG-FDSAIKVHQFQ 378 (839)
Q Consensus 354 ~~~--~~~~~-~l~t~~-~dg~i~iw~~~ 378 (839)
|++ .++++ +|++.+ .++++.+||.+
T Consensus 234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 234 LTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 877 45555 566655 57899999985
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.59 E-value=1.4 Score=50.55 Aligned_cols=238 Identities=7% Similarity=-0.087 Sum_probs=121.2
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~ 115 (839)
.+|+......|+..++...+....+... ..+.+|++. +..+ ..+++-...+.|+.+++......
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~--~~~~gl~~d-------~~~~--~lY~sD~~~~~I~~~~l~g~~~~----- 459 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN--RIYWSDLSQRMICSTQLDRAHGV----- 459 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSC--SSEEEEEEE-------TTTT--EEEEEETTTTEEEEEEC-----------
T ss_pred cccccccccceeEeeccCCcceeeecCC--CceEEEeec-------ccCC--eeEEeeccceeEEEEeccCCCCC-----
Confidence 4566666677888888765544434332 247889998 4322 03333345688888887632100
Q ss_pred CccccceeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc-c
Q 003208 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-A 193 (839)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~ 193 (839)
......+.........|++.+ .+. +.++-...+.|.+.++........+.... ..-..+++ .+. +
T Consensus 460 ------~~~~~vi~~~l~~P~GLAvD~---~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l-~~P~gIaV---Dp~~g 526 (791)
T 3m0c_C 460 ------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-SKPRAIVV---DPVHG 526 (791)
T ss_dssp --------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-CCEEEEEE---ETTTT
T ss_pred ------cceeEEEecCCCCcceeeeee---cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC-CCcceEEE---ecCCC
Confidence 011122222334567899987 554 44555567889999986544332222111 11223333 233 3
Q ss_pred eEEEEeec-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEE
Q 003208 194 LRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (839)
Q Consensus 194 ~~l~sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 272 (839)
.+.++-.. .+.|...++. .......+...-....+|++++.+..|+
T Consensus 527 ~LYwtD~g~~~~I~~~~~d---------------------------------G~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 527 FMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp EEEEEECSSSCEEEEEETT---------------------------------SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CEEEecCCCCCeEEEEecC---------------------------------CCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 33333222 2566666654 1111112223346789999998777666
Q ss_pred EEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEE-EeCCCeEEEEcC-CCceEEEe
Q 003208 273 SVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 273 s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s-~~~dg~i~vw~~-~~~~~~~~ 343 (839)
.+. ....|...++..... +.+. ...+.-.....|++.++.|+. -...+.|...+. +|+.+..+
T Consensus 574 waD~~~~~I~~~d~dG~~~------~~v~--~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeCCCCcEEEEecCCCce------EEEe--cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 654 456788888866443 1110 111112234455555444443 344566666664 55444433
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.51 E-value=0.12 Score=59.50 Aligned_cols=114 Identities=6% Similarity=-0.039 Sum_probs=66.6
Q ss_pred cCCC-CeEEEEEc-CCCCEEEEEeC-C----CcEEEEEcccC-ccCCCCCceeeeceEeeccccceEEeEEC--CCEEEE
Q 003208 254 GHEG-SIFRIEWS-SCGSKLVSVSD-D----RSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (839)
Q Consensus 254 ~h~~-~V~~l~~~-~~~~~l~s~s~-d----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s 323 (839)
+|.. .+...+|| |||++|+-... + .+|+++|+.++ +. +. ..+. .....+.|+ ++.|+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~----~~~~---~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IA----DKVS---GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CC----CCEE---EECSCCEECSSTTEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CC----cccc---CceeeEEEecCCCEEEE
Confidence 3443 67889999 99998875432 2 25999999887 53 11 0111 112356787 456665
Q ss_pred EeCC-----CeEEEEcC-CCc--eEEEeecccCCceEEEEEccCCCEEEEEeC---CCcEEEEecCC
Q 003208 324 AGED-----CTCRVWGS-DGK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGF---DSAIKVHQFQA 379 (839)
Q Consensus 324 ~~~d-----g~i~vw~~-~~~--~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~---dg~i~iw~~~~ 379 (839)
...| ..|.++++ ++. ....+......-...+.|+|||++|+.... ...|.++|+.+
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 5554 35777888 332 122222222213567899999998776553 33566666643
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.44 E-value=1.7 Score=49.84 Aligned_cols=183 Identities=9% Similarity=-0.055 Sum_probs=104.6
Q ss_pred CCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCc
Q 003208 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (839)
Q Consensus 155 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (839)
....|+..++........+..... ...+.+. ..++.+.++-...+.|+.+++.....
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~--~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~------------------- 458 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRN--VVALDTE--VASNRIYWSDLSQRMICSTQLDRAHG------------------- 458 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSS--EEEEEEE--TTTTEEEEEETTTTEEEEEEC------------------------
T ss_pred cccceeEeeccCCcceeeecCCCc--eEEEeec--ccCCeeEEeeccceeEEEEeccCCCC-------------------
Confidence 345688888765544433333222 2334431 12444555555567788887761000
Q ss_pred eeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEE
Q 003208 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (839)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 313 (839)
.......+........+|++.+.++.| ++-...+.|.+.++..... + ............
T Consensus 459 ----------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~----~l~~~~l~~P~g 518 (791)
T 3m0c_C 459 ----------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------K----TLFRENGSKPRA 518 (791)
T ss_dssp -------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------E----EEEECTTCCEEE
T ss_pred ----------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------E----EEEeCCCCCcce
Confidence 011122233344567889999877555 4555678899999876433 1 122223345678
Q ss_pred eEEC--CCEEEEEeC--CCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCc
Q 003208 314 CCLT--DSFIITAGE--DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (839)
Q Consensus 314 ~~~~--~~~l~s~~~--dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~-~dg~i~iw~~~~~ 380 (839)
|++. ...|+.... .+.|.+.+++|.....+..........|++++.+..|+.+. ....|...++.+.
T Consensus 519 IaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 519 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 8886 345555542 36788888877666555443322478899997766666654 4567888888663
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.33 E-value=0.94 Score=44.72 Aligned_cols=188 Identities=10% Similarity=0.085 Sum_probs=119.2
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccccc
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~ 217 (839)
...+| ..+.+|.-. ..++.|+|+++.+.+....-++....|.. .+++..-|++. ..|+-|++..
T Consensus 72 AIMnP---~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkW----is~~~L~lVT~---taVyHWs~~~----- 135 (365)
T 2xzh_A 72 AIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKW----ISLNTVALVTD---NAVYHWSMEG----- 135 (365)
T ss_dssp EEECS---SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEE----CSSSEEEEEES---SEEEEEESST-----
T ss_pred eeeCC---CccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEe----cCCCeEEEEcC---CcEEEEcccC-----
Confidence 34588 888887765 67899999999999988877665433332 24444445544 6799999872
Q ss_pred CCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC----CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcc
Q 003208 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSIFRIEWSSCGSKLVSVSD-------DRSARIWEVR 286 (839)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~-------d~~i~iwd~~ 286 (839)
...+...+.-| ...|..-..+++.++++..+- .|.+.+|..+
T Consensus 136 ---------------------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 136 ---------------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp ---------------------------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred ---------------------------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 12233333333 356777788888888766542 3677888887
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEECC----CEEEE-EeC---CCeEEEEcC--C--Cce-----EEE-eecc--
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIIT-AGE---DCTCRVWGS--D--GKQ-----LKM-IKEH-- 346 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s-~~~---dg~i~vw~~--~--~~~-----~~~-~~~h-- 346 (839)
.+.. ..+.||......+...+ ..+++ +.. .+.++|-++ . +.. ... +-..
T Consensus 189 r~~s-----------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea 257 (365)
T 2xzh_A 189 RKVS-----------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257 (365)
T ss_dssp TTEE-----------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTC
T ss_pred cccc-----------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccc
Confidence 7644 37778876665555542 22322 222 268899887 2 211 111 1111
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..+-.-++..++.-..++.-+.-|.+.+||+++
T Consensus 258 ~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred cCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 111234778888888899999999999999965
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.32 E-value=1.1 Score=45.20 Aligned_cols=199 Identities=8% Similarity=0.062 Sum_probs=115.0
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeecc-CCCc---E-EEEEeC--CCcEEE
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-NGNR---S-LAIGCS--DNSIRV 161 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-~~~~---~-las~~~--d~~i~v 161 (839)
.+|++...+-+.+||++ ++.++.+.. +.++.+.+-|.- -.+. + +++.-. +++|++
T Consensus 42 ~ii~t~k~~gL~Vydl~----------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLD----------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEEEEETTTEEEEEETT----------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEcCCCCEEEEcCC----------------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence 56666677899999995 566777654 567777776610 0122 2 233334 589999
Q ss_pred EecC--CCceEEEEec---C--Cc-eeEEEEeeccCCccc-eEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCC
Q 003208 162 WDIS--NSSIILEVHS---P--ER-CLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (839)
Q Consensus 162 wd~~--~~~~~~~~~~---~--~~-~~~~s~~~~~~~~~~-~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 232 (839)
|++. ++ .+..+.. + .. ...+.++++.....+ .++++...+|.+..|++......
T Consensus 104 f~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g---------------- 166 (355)
T 3amr_A 104 YAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG---------------- 166 (355)
T ss_dssp EEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------
T ss_pred EEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------
Confidence 9773 33 3444422 1 11 223444443223334 47888888999999998611000
Q ss_pred CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceE
Q 003208 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (839)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 312 (839)
....+.++.+.- .+.+-.+...+...+|+.+-+|.-|..++.+.... ...+.+...........+.
T Consensus 167 ----------~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~---~~~~~v~~~~~g~l~aDvE 232 (355)
T 3amr_A 167 ----------YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG---SNGTVIDRADGRHLTRDIE 232 (355)
T ss_dssp ----------CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC---SCCEEEEEBSSSSBCSCEE
T ss_pred ----------cccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC---CCceEEEEecCCccccCcc
Confidence 013455666653 35788999999999999999997666666443221 0012221101111223577
Q ss_pred EeEEC----C-CEEEEEe-CCCeEEEEcCC
Q 003208 313 DCCLT----D-SFIITAG-EDCTCRVWGSD 336 (839)
Q Consensus 313 ~~~~~----~-~~l~s~~-~dg~i~vw~~~ 336 (839)
.|++. + .+|++.+ .++++.+||..
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 77763 2 3565555 66799999983
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.23 E-value=0.56 Score=49.70 Aligned_cols=153 Identities=8% Similarity=-0.058 Sum_probs=83.5
Q ss_pred eeEEEEecCC--CCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-C
Q 003208 20 ISALCFVHLP--SHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E 96 (839)
Q Consensus 20 Vt~l~f~~~~--~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~ 96 (839)
..+|+++ | + .+.+.++-..+.|+.+|.++++...... ....+.+|+++ ++| .++++.. .
T Consensus 141 P~gvavd--~~s~---~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd-------~dG----~lyVad~~~ 202 (433)
T 4hw6_A 141 IWRMMFD--PNSN---YDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFT-------LNG----DMVVVDDQS 202 (433)
T ss_dssp CCEEEEC--TTTT---TCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEEC-------TTC----CEEEEECCS
T ss_pred CceEEEc--cccC---CCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEEC-------CCC----CEEEEcCCC
Confidence 4688888 7 2 1455555435899999998877654433 23358999999 887 4443332 1
Q ss_pred ---cE-EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCCCceEE
Q 003208 97 ---KR-VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 97 ---~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~~~~~~ 171 (839)
.. +...+... . +. ....+..+ .....+++.| +...|. +-..++.|+.+|..++....
T Consensus 203 ~~~~~gv~~~~~~~-~-----~~-----~~~~~~~~----~~P~giavd~---~~G~lyv~d~~~~~V~~~d~~~g~~~~ 264 (433)
T 4hw6_A 203 SDTNTGIYLFTRAS-G-----FT-----ERLSLCNA----RGAKTCAVHP---QNGKIYYTRYHHAMISSYDPATGTLTE 264 (433)
T ss_dssp CTTSEEEEEECGGG-T-----TC-----CEEEEEEC----SSBCCCEECT---TTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred CcccceEEEEECCC-C-----ee-----cccccccc----CCCCEEEEeC---CCCeEEEEECCCCEEEEEECCCCeEEE
Confidence 12 22222211 1 00 01111221 2345677877 444444 44456789999998776533
Q ss_pred EE-ecCCceeEEEEeeccCCccceE-EEEeecCCeEEEEEee
Q 003208 172 EV-HSPERCLLYSMKLWGDNLEALR-IASGTIYNEIIVWKVD 211 (839)
Q Consensus 172 ~~-~~~~~~~~~s~~~~~~~~~~~~-l~sg~~dg~i~vw~~~ 211 (839)
.+ ........+.+.+ ++++.. .++-...+.|+.++..
T Consensus 265 ~~~~~~~~~~~~~ia~---dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 265 EEVMMDTKGSNFHIVW---HPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEECSCCSSCEEEEE---CTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEeccCCCCCcccEEE---eCCCCEEEEEeCCCCEEEEEeCC
Confidence 22 2111122223444 577774 4455556888888865
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.23 E-value=1.6 Score=46.25 Aligned_cols=155 Identities=7% Similarity=-0.023 Sum_probs=86.0
Q ss_pred eeeEEEEecCC-CCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-
Q 003208 19 EISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (839)
Q Consensus 19 ~Vt~l~f~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~- 95 (839)
....|+++ | + ...|++.. ++.|+.+|.+++....... ......+|+++ ++|+ .++++..
T Consensus 138 ~P~~lavd--p~~----~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d-------~~G~---~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFD--PKN----HNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWT-------HEAD---SMIITNDQ 199 (430)
T ss_dssp CCCEEEEE--TTE----EEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEEC-------TTSS---EEEEEECC
T ss_pred CCCEEEEC--CCC----CCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEe-------CCCC---EEEEEeCC
Confidence 34688998 7 4 33444444 5889999988766544333 23358899999 8873 3555543
Q ss_pred Cc----EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEE
Q 003208 96 EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (839)
Q Consensus 96 ~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~ 171 (839)
++ .+.+++.. .. +. ....+..+ ....+++++| .++.++++-...+.|..++..++....
T Consensus 200 ~~~~~~~v~~~~~~-g~-----~~-----~~~~l~~~----~~p~giavdp--~~g~lyv~d~~~~~V~~~~~~~~~~~~ 262 (430)
T 3tc9_A 200 NNNDRPNNYILTRE-SG-----FK-----VITELTKG----QNCNGAETHP--INGELYFNSWNAGQVFRYDFTTQETTP 262 (430)
T ss_dssp SCTTSEEEEEEEGG-GT-----SC-----SEEEEEEC----SSCCCEEECT--TTCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcccceEEEEeCC-Cc-----ee-----eeeeeccC----CCceEEEEeC--CCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 22 23333322 11 00 01122222 2346678887 134444454467889999997665422
Q ss_pred EEecCCceeEEEEeeccCCccce-EEEEeecCCeEEEEEee
Q 003208 172 EVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVD 211 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~-~l~sg~~dg~i~vw~~~ 211 (839)
.........-..+.+ ++++. +.++-...+.|..++..
T Consensus 263 ~~~~~~~~~P~gia~---~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 263 LFTIQDSGWEFHIQF---HPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCcceeEEE---cCCCCEEEEEECCCCEEEEEeCC
Confidence 222221111223444 57887 44555567899998876
No 294
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.04 E-value=0.71 Score=46.07 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=51.2
Q ss_pred CCCEEEEEeCC-----CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCC-----CeEEEEcCC
Q 003208 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (839)
Q Consensus 267 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~d-----g~i~vw~~~ 336 (839)
+++.++.|+.+ ..+.+||+.+..- +.+. .+.........+.+.+..++.|+.+ ..+.+||+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHW------TNVT--PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcE------EeCC--CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Confidence 55666666654 4588888877543 1111 1111111122334446666777664 468889984
Q ss_pred CceEEEeeccc-CCceEEEEEccCCCEEEEEeCCC-----cEEEEecC
Q 003208 337 GKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (839)
Q Consensus 337 ~~~~~~~~~h~-~~~i~~~~~~~~~~~l~t~~~dg-----~i~iw~~~ 378 (839)
...-..+.... .+.-.+++. -++++++.||.++ .+.+||++
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCC
Confidence 33323332111 111112222 2567777777653 45666664
No 295
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.00 E-value=0.2 Score=51.50 Aligned_cols=157 Identities=12% Similarity=0.143 Sum_probs=96.5
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeec---CceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFH---GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~ 111 (839)
+.-++...++.||.=++..+..-+.++... -..|+.+..+ |+| .++|..++..|.|..+..+....
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS-------psG----~lLAl~g~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS-------TSG----DLLCLFNDNEIFVMEVPWGYSNV 100 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC-------TTS----SEEEEECSSEEEEEECCTTCSCC
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEEC-------CCC----CEEEEecCCeEEEEEecCccccC
Confidence 566777778889988887544444444431 1136778888 888 89999999999999998432111
Q ss_pred CCCCCccc-cceeeeEecc------CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc--eEEEEecCCc----
Q 003208 112 SQYQPETC-VNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPER---- 178 (839)
Q Consensus 112 ~~~~~~~~-~~~~~~~~~~------~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~---- 178 (839)
.. ... ...+ .+.+. ....+|..+.|||.+..+..|++-..|+.|++||+.... +. .+.....
T Consensus 101 ~~---~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~ 175 (452)
T 3pbp_A 101 ED---VSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGL 175 (452)
T ss_dssp CC---HHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEES
T ss_pred cc---cccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCC
Confidence 10 000 0011 11111 135789999999977677789999999999999997522 22 2321111
Q ss_pred ----eeEEEEeeccCCccceEEEE--eecCCeEEEEEe
Q 003208 179 ----CLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKV 210 (839)
Q Consensus 179 ----~~~~s~~~~~~~~~~~~l~s--g~~dg~i~vw~~ 210 (839)
..+-+++| +.++..|.. .+..|.|+-.-+
T Consensus 176 d~~~~ev~S~~F---g~~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 176 DARVNDITDLEF---SKDGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp CSSCCCEEEEEE---CTTSSCEEEEECTTSCEEEEESS
T ss_pred CcccceEEEEEE---cCCCcEEEEEecCCCCCEEEECC
Confidence 22335555 334554444 447787776544
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.94 E-value=1.5 Score=43.39 Aligned_cols=225 Identities=10% Similarity=0.089 Sum_probs=133.0
Q ss_pred CccccccCCCc--eeeeeeE--EEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEeccccccc
Q 003208 5 DLSEWRLDVGQ--YLGEISA--LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (839)
Q Consensus 5 ~i~~w~~~~~~--~~~~Vt~--l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 80 (839)
.+.|-|+..+. -..|+.| .-.+ |. .+.++.=.+.+|+|||+++.+.+..+...+ .|.-=.|-
T Consensus 50 ~VvIiDl~n~~~~~Rrpi~AdsAIMn--P~----~~ViALrag~~LQiFnletK~klks~~~~e--~VvfWkWi------ 115 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWI------ 115 (365)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEEC--SS----SSEEEEEETTEEEEEETTTTEEEEEEECSS--CEEEEEEC------
T ss_pred EEEEEECCCCCCccccccccceeeeC--CC----ccEEEEecCCeEEEechHHhhhhcceecCC--ccEEEEec------
Confidence 56677777654 2234432 2235 77 677777778999999999999988888644 35555555
Q ss_pred CCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC----CcceEEEEEeeccCCCcEEEEEeC-
Q 003208 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGCS- 155 (839)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~~~~~~~~~~~~~las~~~- 155 (839)
.+ ..|+.-.+..|.-|++.... .+++.+..| ...|..-..++ +.++++..+-
T Consensus 116 -s~-----~~L~lVT~taVyHWs~~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~GI~ 172 (365)
T 2xzh_A 116 -SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTGIS 172 (365)
T ss_dssp -SS-----SEEEEEESSEEEEEESSTTC--------------CCEEEEECCGGGTTCEEEEEEECT---TSCEEEEEEEE
T ss_pred -CC-----CeEEEEcCCcEEEEcccCCC--------------CCceeeecchhcccceEEEEEECC---CCCEEEEEeEe
Confidence 44 56777778999999997533 222222222 23566666666 7776654321
Q ss_pred ------CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC---CeEEEEEeeccccccCCCCCCCcc
Q 003208 156 ------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNH 226 (839)
Q Consensus 156 ------d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 226 (839)
.|.+.+|..+.+ .-+.+++|..+- .++.+-+......+++-+... +.+++-++....
T Consensus 173 ~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~------------ 238 (365)
T 2xzh_A 173 AQQNRVVGAMQLYSVDRK-VSQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP------------ 238 (365)
T ss_dssp EETTEEEEEEEEEETTTT-EEEEECCSEEEE-EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCC------------
T ss_pred ccCCccceeEEEEeeccc-ccceeeeeeeee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCC------------
Confidence 356888888644 334455554332 233332233333444444332 578888775110
Q ss_pred CCCCCC-CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 227 AHGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
.+... ..+.+.+.-. -..-.+-..++..++....++.-+.-|.|.+||+.++.+
T Consensus 239 -~~~~~f~kk~vdi~fp---------pea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 239 -TGNQPFPKKAVDVFFP---------PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp -TTCCCCCCEEEEECCC---------TTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred -CCCCCcccccceeeCC---------ccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 00000 1111111110 012345667888898888999999999999999999866
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.92 E-value=0.78 Score=45.91 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=52.7
Q ss_pred eEEEEEc---CcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC----CcEEE
Q 003208 89 FEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRV 161 (839)
Q Consensus 89 ~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d----~~i~v 161 (839)
.+++.+| ...+.+||..... +..+..+......-..+ . - ++.+++.|+.+ +.+.+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~-------------W~~~~~~p~~r~~~~~~-~-~---~~~lyv~GG~~~~~~~~~~~ 74 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS-------------WTDIRCPFEKRRDAACV-F-W---DNVVYILGGSQLFPIKRMDC 74 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE-------------EEECCCCSCCCBSCEEE-E-E---TTEEEEECCBSSSBCCEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCC-------------EecCCCCCcccceeEEE-E-E---CCEEEEEeCCCCCCcceEEE
Confidence 4555555 3578888876543 44444333222222222 2 2 66777777754 67888
Q ss_pred EecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC------CeEEEEEee
Q 003208 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVD 211 (839)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d------g~i~vw~~~ 211 (839)
||..+.+-...-..+....-.++.. .++.+++.|+.+ ..+.+||+.
T Consensus 75 ~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 75 YNVVKDSWYSKLGPPTPRDSLAACA----AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp EETTTTEEEEEECCSSCCBSCEEEE----ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred EeCCCCeEEECCCCCccccceeEEE----ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 9988765433222222111112222 245666666654 457777766
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.67 E-value=0.023 Score=64.70 Aligned_cols=238 Identities=9% Similarity=-0.057 Sum_probs=117.0
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~ 114 (839)
.+|+......|++.++.+.+....+.... .+.+|+|. +.++ .++.+ ...+.|+.+++......
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~~~~--~p~gla~d-------~~~~---~Ly~sD~~~~~I~~~~~~g~~~~---- 441 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIPNLR--NVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHGV---- 441 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSCCCT--TCCCCEEE-------TTTT---EEEECCTTTTSBEEEESCCCCC-----
T ss_pred eeEEecCccceEEEeCCCCcceeeeccCc--ceEEEccc-------cccC---eEEEEecCCCeEEEEecCCCCCC----
Confidence 34444555688888888766555444433 47889998 5432 33333 34678888887641100
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccce
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 194 (839)
......+.........|++.+ ..+.++++-...+.|.+.++........+..... ....+++ ++.+.
T Consensus 442 -------~~~~~~i~~~~~~P~glavD~--~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~-~P~giav---Dp~~g 508 (699)
T 1n7d_A 442 -------SSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS-KPRAIVV---DPVHG 508 (699)
T ss_dssp -------CCCCCBCCSCC--CCCEECCC--SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC-CCCCEEC---CSSSS
T ss_pred -------cceEEEEeCCCCCcceEEEEe--eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC-CcceEEE---ccCCC
Confidence 000011111112345677775 1344445545567899999865443322221110 0111222 23333
Q ss_pred EEEEee-c-CCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE-ecCCCCeEEEEEcCCCCEE
Q 003208 195 RIASGT-I-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 195 ~l~sg~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l 271 (839)
.|+... . .+.|.+.++. +.....+ ...-....+|+|+|++..|
T Consensus 509 ~ly~td~~~~~~I~~~~~d----------------------------------G~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp CCEECCCSSSCCEEBCCSS----------------------------------SCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred cEEEcccCCCCeEEEEeCC----------------------------------CCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 333222 1 2455555544 1111111 1223456789999876555
Q ss_pred -EEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEeCCCeEEEEcC-CCceEEEee
Q 003208 272 -VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (839)
Q Consensus 272 -~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vw~~-~~~~~~~~~ 344 (839)
++-+..+.|..+++..... +.+. ...........+++. +.++++....+.|..++. +++.+..+.
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~------~~~~--~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEEETTTTEEEEECSSSSCC------EEEC--CCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEecCCCeEEEEccCCCce------EEEE--ecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4445667899999875332 1110 111111223344555 444455556678888886 666665554
No 299
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.63 E-value=1.2 Score=44.53 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC-------CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCC-----CeEEEEc
Q 003208 267 CGSKLVSVSDD-------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWG 334 (839)
Q Consensus 267 ~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~d-----g~i~vw~ 334 (839)
+++.++.|+.+ ..+.+||+.+..- ..+. .+.........+.+.+..++.|+.+ ..+.+||
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEW------TYIA--EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcE------EECC--CCccccccccEEEECCEEEEECCCCCCcccceEEEEe
Confidence 45555555532 3578888876543 1111 1111111122334456667777664 3688888
Q ss_pred CCCceEEEeecccC-CceEEEEEccCCCEEEEEeCCC-----cEEEEecCC
Q 003208 335 SDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQA 379 (839)
Q Consensus 335 ~~~~~~~~~~~h~~-~~i~~~~~~~~~~~l~t~~~dg-----~i~iw~~~~ 379 (839)
.....-..+..... +.-.+++. .++++++.||.++ .+.+||+..
T Consensus 227 ~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 227 PTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 84333223322111 10112222 3567778887654 467777743
No 300
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.56 E-value=1.3 Score=44.54 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=45.5
Q ss_pred CCCEEEEEeC-C-----CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCC-----eEEEEcC
Q 003208 267 CGSKLVSVSD-D-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGS 335 (839)
Q Consensus 267 ~~~~l~s~s~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg-----~i~vw~~ 335 (839)
+++.++.|+. + ..+.+||+.+..- +.+. .+........++.+.+..++.|+.++ .+.+||+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW------KELA--PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeE------EECC--CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 4556666665 2 4688888877543 1111 11111111223344566777777654 5778888
Q ss_pred CCceEEEeeccc-CCceEEEEEccCCCEEEEEeCC
Q 003208 336 DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 336 ~~~~~~~~~~h~-~~~i~~~~~~~~~~~l~t~~~d 369 (839)
....-..+.... .+.-.+++. -++++++.||.+
T Consensus 220 ~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 220 TDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp TTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEE
T ss_pred CCCeEEECCCCCCcccceeEEE-ECCEEEEECCcc
Confidence 433322222211 111112222 256777777764
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.53 E-value=4 Score=45.42 Aligned_cols=223 Identities=9% Similarity=-0.106 Sum_probs=116.7
Q ss_pred EEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEe-CCCcEEEEecCCCc
Q 003208 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSS 168 (839)
Q Consensus 90 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~-~d~~i~vwd~~~~~ 168 (839)
++.-...+.|+..++.... .+..... ..-....+++|++ .+..|+-+. ..+.|..+++....
T Consensus 11 ~~~~~~~~~I~~i~~~~~~-------------~~~~~~~-~~~~~~~~ld~~~---~~~~ly~sD~~~~~I~r~~~~g~~ 73 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGK-------------ENATIVV-GGLEDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKTE 73 (619)
T ss_dssp CEEEECSSBEEEECCC----------------------C-BCCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred eEEEeccccEEEEeCCCCc-------------ceEEEEE-cCCCceEEEEEEe---CCCEEEEEECCCCeEEEEEccCCC
Confidence 4445556788888876421 0111111 1223478899998 666665444 46778888886543
Q ss_pred e-EEEEecCCceeEEEEeeccCCc-cceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 169 I-ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 169 ~-~~~~~~~~~~~~~s~~~~~~~~-~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
. ...+..... ....+++ +. .+.+.++-...+.|.+.++. ..
T Consensus 74 ~~~~v~~~~~~-~P~GlAv---D~~~~~ly~~d~~~~~I~v~~~d---------------------------------G~ 116 (619)
T 3s94_A 74 SVQNVVVSGLL-SPDGLAC---DWLGEKLYWTDSETNRIEVSNLD---------------------------------GS 116 (619)
T ss_dssp -CEEEECSSCS-CEEEEEE---ETTTTEEEEEETTTTEEEEEETT---------------------------------SC
T ss_pred ceEEEEeCCCC-CcCeEEE---EecCCEEEEEeCCCCEEEEEECC---------------------------------CC
Confidence 2 222222211 1223333 23 45556666667888888876 11
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~ 322 (839)
.....+...-....+|+++|.+.+|+.+.. ...|...+++.... +. .....-.....++++ .+.|+
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------~~----l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FI----IINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSSEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------EE----EEeCCCCCCcEEEEEccCCEEE
Confidence 111112234456789999997666665553 35666666654332 11 111223456778887 45555
Q ss_pred EE-eCCCeEEEEcCCCceEEEeec-ccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 323 TA-GEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 323 s~-~~dg~i~vw~~~~~~~~~~~~-h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.+ ...+.|...+++|.....+.. ... ....|++..+ .++++-...+.|...|..
T Consensus 187 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEeCCCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 44 456789999987655444422 111 2346777655 445554557788888873
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.51 E-value=0.51 Score=47.02 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=76.8
Q ss_pred CeEEEEE---cCCCCEEEEEe-------------CCCcEEEEEcc---cCccCCCCCceeeeceEeecc-----------
Q 003208 258 SIFRIEW---SSCGSKLVSVS-------------DDRSARIWEVR---AEYWKDSDSIEEVGSSVLYGH----------- 307 (839)
Q Consensus 258 ~V~~l~~---~~~~~~l~s~s-------------~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~h----------- 307 (839)
.+.+|.| .|+++.+++.. .++.|..+|+. +++. .... .+...
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-----~~~~---dL~~~~~~~~~~~g~~ 135 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-----VWSV---NFEKVQDEFEKKAGKR 135 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-----SEEE---ESHHHHHHHHHHHSSC
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-----EEEe---cCcccccccccccccc
Confidence 3578999 68876666533 26789999998 5544 1111 11111
Q ss_pred ccceEEeEEC--CCEEEEEeCC-CeEEEEcCCCceEEEeecc-----cCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 308 NARVWDCCLT--DSFIITAGED-CTCRVWGSDGKQLKMIKEH-----IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 308 ~~~v~~~~~~--~~~l~s~~~d-g~i~vw~~~~~~~~~~~~h-----~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
......++.. ++..++++.- +.|...+.+|+.+..+... .......|+++|++..|++....|.+..+|+.
T Consensus 136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1236677777 7888888888 8888888877654433211 11136689999999988888779999999986
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.27 E-value=2.7 Score=41.86 Aligned_cols=155 Identities=8% Similarity=0.036 Sum_probs=89.8
Q ss_pred EEEEecCCCCCCCcceEEEee-CCeeEEEECCCCeeeeE-Eee-----ecCceEEeEEe---cccccccCCCccceeeEE
Q 003208 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQV-----FHGIRLHGISC---NFINCTEGSVSTRVTFEV 91 (839)
Q Consensus 22 ~l~f~~~~~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~-~~~-----~~~~~v~~i~~---~~~~~~~~~~~~~~~~~l 91 (839)
+++|. +. .+++.++.- .+.|..||...+..... +.. .....+.+|.+ . |++ .++
T Consensus 17 ~~~wd--~~---~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D-------~~g----rL~ 80 (334)
T 2p9w_A 17 DTIYD--RT---RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHD-------NSK----RLF 80 (334)
T ss_dssp CEEEE--TT---TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSS-------SCC----EEE
T ss_pred CccCc--CC---CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccC-------CCC----cEE
Confidence 67787 54 244555543 89999999876543322 221 11224678888 5 565 555
Q ss_pred EEEc--------------CcEEEEEEee---ccCCCCCCCCCccccceeeeEeccC-----------CCcceEEEEEeec
Q 003208 92 ALFG--------------EKRVKLFELN---FELSPNSQYQPETCVNLSLVQSLPR-----------LSHWVFDVCFLKV 143 (839)
Q Consensus 92 ~~~~--------------~~~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~I~~~~~~~~ 143 (839)
++.. +..|..+|+. +.. ......|.. -.....++++.+
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-------------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~- 146 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-------------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR- 146 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-------------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCC-------------EEEEecCccccccccccccccccCCceeEECC-
Confidence 5432 5778889987 332 111112211 113478999998
Q ss_pred cCCCcEEEEEeCC-CcEEEEecCCCceE-EEEec---CCceeEEEEeeccCCccceEEEEeecCCeEEEEEee
Q 003208 144 CNGNRSLAIGCSD-NSIRVWDISNSSII-LEVHS---PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (839)
Q Consensus 144 ~~~~~~las~~~d-~~i~vwd~~~~~~~-~~~~~---~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~ 211 (839)
+|+..++++.. +.|...+....... .-+.. ....-...+.+ .|++.+|++....|.|..+|+.
T Consensus 147 --~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~---~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 147 --DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF---DPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp --TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE---ETTTTEEEEESSSSSEEEEECS
T ss_pred --CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE---eCCCCEEEEEcCCCeEEEEcCC
Confidence 99988888887 77777766533222 11111 11111122333 3778777766559999999987
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.25 E-value=4.9 Score=44.74 Aligned_cols=222 Identities=9% Similarity=-0.088 Sum_probs=127.6
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~~ 167 (839)
.+|..+..+.|+..+++... ......+.+ -..+.+++|++ ....|+ +-..++.|..+++...
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~-------------~~~~~~~~~-~~~~~~l~~d~---~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNN-------------NNVAIPLTG-VKEASALDFDV---TDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp CEEEEEETTEEEEEESSCTT-------------CEEECCCCS-CSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEeCCcEEEEECCCCC-------------cceEEEcCC-CCceEEEEEEC---CCCEEEEEECCCCeEEEEECCCC
Confidence 45666678899999987432 111112222 23578999998 655554 4455788998888654
Q ss_pred ceEEEEecC-CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccc
Q 003208 168 SIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (839)
Q Consensus 168 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (839)
.....+... ....-.++.+ ..+.+.++-...+.|.+.++. ..
T Consensus 70 ~~~~v~~~g~~~P~GlAvD~----~~~~LY~tD~~~~~I~v~~~d---------------------------------G~ 112 (628)
T 4a0p_A 70 ALEHVVEFGLDYPEGMAVDW----LGKNLYWADTGTNRIEVSKLD---------------------------------GQ 112 (628)
T ss_dssp SCEEEECSSCSCCCEEEEET----TTTEEEEEETTTTEEEEEETT---------------------------------ST
T ss_pred CcEEEEeCCCCCcceEEEEe----CCCEEEEEECCCCEEEEEecC---------------------------------CC
Confidence 333333222 1111122221 334555555566778888875 11
Q ss_pred eeeEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--CCEEE
Q 003208 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (839)
Q Consensus 247 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~l~ 322 (839)
.....+...-....+|+++|....|+.+.. .+.|...+++.... + .+...-.....++++ ++.|+
T Consensus 113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------~-----~l~~~~~~P~GlalD~~~~~LY 181 (628)
T 4a0p_A 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------T-----TLVPNVGRANGLTIDYAKRRLY 181 (628)
T ss_dssp TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------E-----EEECSCSSEEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------E-----EEECCCCCcceEEEccccCEEE
Confidence 111112233456789999996666665543 45677777765443 1 222234456778887 45555
Q ss_pred EE-eCCCeEEEEcCCCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 003208 323 TA-GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 323 s~-~~dg~i~vw~~~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~ 377 (839)
.+ ...+.|...+++|.....+..... ....+++.. +.++++-...+.|...|.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 182 WTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEECCCCEEEEEcCCCCceEEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 54 456789999986543344433333 456888865 455555555788888885
No 305
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.12 E-value=6.3 Score=45.27 Aligned_cols=454 Identities=9% Similarity=0.012 Sum_probs=211.4
Q ss_pred eeeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcC
Q 003208 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (839)
Q Consensus 17 ~~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (839)
...|+||.-. .+ +.+-++..+| |..||-.+-+............|.+|... .+| .+.+...+
T Consensus 21 ~n~V~~I~qD--~~----G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d-------~~g----~lWigT~~ 82 (758)
T 3ott_A 21 ASVVSCFLQD--SE----GLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVII-------DNT----YLYMGTDN 82 (758)
T ss_dssp CCCEEEEEEC--TT----SCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEE-------TTT----EEEEEETT
T ss_pred cceEEEEEEC--CC----CCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEc-------CCC----cEEEEeCC
Confidence 3468899877 55 5444443355 67788433221111111123457887766 565 44444444
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe--
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH-- 174 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~-- 174 (839)
-+..||..+.. ... ........|.++.. . ++. |..++.+ -+..+|..+.+.. .+.
T Consensus 83 -Gl~~yd~~~~~-------------f~~--~~~~~~~~i~~i~~-~---~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~ 139 (758)
T 3ott_A 83 -GILVYNYRADR-------------YEQ--PETDFPTDVRTMAL-Q---GDT-LWLGALN-GLYTYQLQSRKLT-SFDTR 139 (758)
T ss_dssp -EEEEEETTTTE-------------ECC--CSCCCCSCEEEEEE-E---TTE-EEEEETT-EEEEEETTTCCEE-EECHH
T ss_pred -CeEEEeCCCCE-------------EEC--cccCCCceEEEEEe-c---CCc-EEEEcCC-cceeEeCCCCeEE-EeccC
Confidence 46788875422 111 11112235776653 3 554 5556655 5788888765533 221
Q ss_pred --cCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEE
Q 003208 175 --SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (839)
Q Consensus 175 --~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (839)
......+.++.. ..++.+.+ |+. +-|..++... .+. ..+
T Consensus 140 ~~~l~~~~i~~i~~---d~~g~lWi-gt~-~Gl~~~~~~~---------------------------------~~~-~~~ 180 (758)
T 3ott_A 140 RNGLPNNTIYSIIR---TKDNQIYV-GTY-NGLCRYIPSN---------------------------------GKF-EGI 180 (758)
T ss_dssp HHCCSCSCEEEEEE---CTTCCEEE-EET-TEEEEEETTT---------------------------------TEE-EEE
T ss_pred CCCcCCCeEEEEEE---cCCCCEEE-EeC-CCHhhCccCC---------------------------------Cce-EEe
Confidence 111122444432 33444443 444 3466777551 111 111
Q ss_pred e--c----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC-CCEEEEEe
Q 003208 253 V--G----HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG 325 (839)
Q Consensus 253 ~--~----h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~ 325 (839)
. . ....|.++...+++..|..++. +-+..+|..+... .... .+ ....|.++... ...|..|+
T Consensus 181 ~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~------~~~~--~l--~~~~i~~i~~d~~g~lWigT 249 (758)
T 3ott_A 181 PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI------KQTE--AF--HNNSIKSLALDGNGDLLAGT 249 (758)
T ss_dssp CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE------EEEE--EE--EEEEEEEEEECTTCCEEEEE
T ss_pred cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE------Eecc--CC--CCCeEEEEEEcCCCCEEEEe
Confidence 0 0 1234888888777776666664 4577888765432 1111 11 12357777766 44555555
Q ss_pred CCCeEEEEcCCCceEEEeecc-------cCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCc
Q 003208 326 EDCTCRVWGSDGKQLKMIKEH-------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRT 398 (839)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~~~h-------~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 398 (839)
.+ -+.+++........+... ....|.++..+.+|.+ ..|+..| +.++..... .
T Consensus 250 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~-~---------------- 309 (758)
T 3ott_A 250 DN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNSA-L---------------- 309 (758)
T ss_dssp TT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC--C----------------
T ss_pred CC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCCc-e----------------
Confidence 44 578888743333333211 1124888888877764 4455556 544432110 0
Q ss_pred ceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeee-----cCCCceEEeeec
Q 003208 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV-----SEGMPIICMDLL 473 (839)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~ 473 (839)
+.+...... .......|.++....++.+.+++..| ++.++............... -....+.++...
T Consensus 310 ~~~~~~~~~-------~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 381 (758)
T 3ott_A 310 QFIPISQIT-------GTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYED 381 (758)
T ss_dssp EEEEHHHHS-------CSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEEC
T ss_pred eEEecccCC-------CCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEEC
Confidence 000000000 00012358888888899999998654 54443221111111111100 012234554332
Q ss_pred CCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCCcceeeeEeecc--ceeEEeeEEEeecCCCeEEEEeCCCCcEEEee
Q 003208 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG--IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (839)
Q Consensus 474 ~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd 551 (839)
.. ..|-+|. ++.+..|+..+++... ........ ....+.. .+...++.+.+ |+..+-+.+++
T Consensus 382 ~~---------g~lWigt-~~GL~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~--i~~d~~g~lWi-gT~~~Gl~~~~ 445 (758)
T 3ott_A 382 KE---------QQLWIAT-DGSINRYDYATRQFIH---YNIVDNTGTYNTNWTYY--IFEDTAGQLWI-STCLGGIFVVD 445 (758)
T ss_dssp TT---------SCEEEEE-TTEEEEEETTTTEEEE---EEEECCC--CBSSSEEE--EEECTTSEEEE-EESSSCEEEEE
T ss_pred CC---------CCEEEEe-CCcHhhcCcCCCcEEE---eecCCCcCCCCCceEEE--EEEcCCCCEEE-EECCCceEEEc
Confidence 22 3444555 3467777765433210 00000000 0111222 22345566555 44444577777
Q ss_pred ecCCCCcccccCCccceeeeeeccc--cc-cCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 552 LCDPFSSVCYESSKTNNVFLVAEFS--SC-FGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
....... .. . .......+. .+ ....|.++...++|.+.+.++..+-|..|+...
T Consensus 446 ~~~~~~~-~~---~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 446 KHKLMQS-TS---G--QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp HHHHHHC-CS---S--EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred ccccccc-CC---c--ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 5421000 00 0 000000000 01 123588888888888776434445688888764
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.93 E-value=4 Score=42.09 Aligned_cols=226 Identities=10% Similarity=0.089 Sum_probs=133.8
Q ss_pred cCccccccCCCc--eeeeeeE--EEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccc
Q 003208 4 KDLSEWRLDVGQ--YLGEISA--LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCT 79 (839)
Q Consensus 4 ~~i~~w~~~~~~--~~~~Vt~--l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 79 (839)
..+.|-|+..+. -..|+.+ .-.+ |. .+.++.=.+.+++|||+++.+.+..+...+. |.-=.|-
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnle~K~klks~~~~e~--VvfWkWi----- 114 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--VTFWKWI----- 114 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCSEEEEC--SS----SSCEEEEETTEEEEEETTTTEEEEEEECSSC--CCEEEEE-----
T ss_pred CeEEEEECCCCCcceecccccceeeeC--CC----CcEEEEecCCeEEEEchHHhhhhcceecCCC--ceEEEec-----
Confidence 356777777754 2234442 2244 77 6777777799999999999998888886443 5444454
Q ss_pred cCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEeccCC----CcceEEEEEeeccCCCcEEEEEeC
Q 003208 80 EGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGCS 155 (839)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~~~~~~~~~~~~~las~~~ 155 (839)
.+ ..|+.-.+..|.-|++.... .++..+..| ...|..-..++ +.++++..+-
T Consensus 115 --s~-----~~l~lVT~taVyHWsi~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~GI 170 (494)
T 1bpo_A 115 --SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTGI 170 (494)
T ss_dssp --ET-----TEEEEECSSEEEEEESSSSC--------------CCEEEEECCGGGTTCEEEEEEECT---TSSEEEEEEE
T ss_pred --CC-----CeEEEEcCCeeEEecccCCC--------------CchhheecchhcccceEEEEEECC---CCCeEEEEee
Confidence 33 56777788999999997533 222233233 24566666666 7776654321
Q ss_pred -------CCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC---CeEEEEEeeccccccCCCCCCCc
Q 003208 156 -------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGN 225 (839)
Q Consensus 156 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d---g~i~vw~~~~~~~~~~~~~~~~~ 225 (839)
.|.+.+|..+.+ .-+.+++|..+- .++.+-+......+++.+... +.+++-++....
T Consensus 171 ~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~----------- 237 (494)
T 1bpo_A 171 SAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP----------- 237 (494)
T ss_dssp EEETTEEEEEEEEEESTTC-CEEEECCSEEEE-EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC-----------
T ss_pred cccCCcccceEEEeecccc-ccchheeeeeee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc-----------
Confidence 356888888654 334445554332 233332222233344444443 678888875110
Q ss_pred cCCCCCC-CceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCcc
Q 003208 226 HAHGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (839)
Q Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 290 (839)
.+... ..+.+.+.-. -..-.+-..++..++....++.-+.-|.+.+||+.++.+
T Consensus 238 --~~~~~f~kk~vdv~fp---------pe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 238 --TGNQPFPKKAVDVFFP---------PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp --TTCCCCCCEEEECCCC---------TTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred --cCCCCccceeeeeeCC---------cccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 00000 1111111100 013345667888999888999999999999999999865
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.74 E-value=5.3 Score=42.55 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=66.5
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEeecc---------ccceE-EeEE--------
Q 003208 256 EGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---------NARVW-DCCL-------- 316 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---------~~~v~-~~~~-------- 316 (839)
....+.|+|+|+++.|+.+ +....|+.++...............+..-..+. -.... .+..
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 3557899999999965444 566778887664422100000000000000010 01122 2333
Q ss_pred C-CCEEEEEeCCCeEEEEcCCCceEEEeeccc---------------C--------CceEEEEEccC-CCEEEEEeCCCc
Q 003208 317 T-DSFIITAGEDCTCRVWGSDGKQLKMIKEHI---------------G--------RGIWRCLYDSL-SSLLVTAGFDSA 371 (839)
Q Consensus 317 ~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~---------------~--------~~i~~~~~~~~-~~~l~t~~~dg~ 371 (839)
. +.+.++=..++.|+.++.+|. +.++.+.. + .....|+++++ +.++++=.....
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r 467 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT 467 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred CCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE
Confidence 1 345555566788999987764 44443220 0 12568899986 666666556788
Q ss_pred EEEEecCC
Q 003208 372 IKVHQFQA 379 (839)
Q Consensus 372 i~iw~~~~ 379 (839)
|+.+++++
T Consensus 468 Irki~~~~ 475 (496)
T 3kya_A 468 IRTISMEQ 475 (496)
T ss_dssp EEEEEECC
T ss_pred EEEEECCC
Confidence 99998855
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.68 E-value=4.7 Score=41.63 Aligned_cols=188 Identities=9% Similarity=0.081 Sum_probs=120.7
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccccc
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~ 217 (839)
...+| ..+.+|.-. ..++.|+|+++.+.+....-++....|.. .+++..-|+| +..|+-|++..
T Consensus 71 AIMnP---~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkW----is~~~l~lVT---~taVyHWsi~~----- 134 (494)
T 1bpo_A 71 AIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKW----ISLNTVALVT---DNAVYHWSMEG----- 134 (494)
T ss_dssp EEECS---SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEE----EETTEEEEEC---SSEEEEEESSS-----
T ss_pred eeeCC---CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEe----cCCCeEEEEc---CCeeEEecccC-----
Confidence 45678 778887765 68999999999999988876665444432 1333333443 36799999861
Q ss_pred CCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcc
Q 003208 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSIFRIEWSSCGSKLVSVS-------DDRSARIWEVR 286 (839)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s-------~d~~i~iwd~~ 286 (839)
...+...+.-| ...|..-..+++.++++..+ -.|.+.+|..+
T Consensus 135 ---------------------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 135 ---------------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp ---------------------------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred ---------------------------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 12233333333 35677788889998876544 24677888887
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEEEeCC---CeEEEEcCC----Cc-----eEEEee-cc--
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGED---CTCRVWGSD----GK-----QLKMIK-EH-- 346 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~~~d---g~i~vw~~~----~~-----~~~~~~-~h-- 346 (839)
.... ..+.||......+...+ ..++-+... +.++|-++. +. ....+. ..
T Consensus 188 r~~s-----------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~ 256 (494)
T 1bpo_A 188 RKVS-----------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (494)
T ss_dssp TCCE-----------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred cccc-----------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence 7654 37788877666666553 233333332 789998882 11 111111 11
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
..+--.++..++.-..++.-+.-|.+.+||+.+
T Consensus 257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred ccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence 111234788888888999999999999999965
No 309
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.67 E-value=6.8 Score=43.50 Aligned_cols=234 Identities=12% Similarity=-0.019 Sum_probs=115.1
Q ss_pred cceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEE-EEEcCcEEEEEEeeccCCCCCC
Q 003208 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV-ALFGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 35 ~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l-~~~~~~~i~iw~~~~~~~~~~~ 113 (839)
..+|+-.....|+..++.......++.......+.+|+++ +.++ .++ +-...+.|..++++...
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~-------~~~~---~ly~sD~~~~~I~r~~~~g~~----- 73 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFV-------FSHG---LIYWSDVSEEAIKRTEFNKTE----- 73 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC---------
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEE-------eCCC---EEEEEECCCCeEEEEEccCCC-----
Confidence 3567777788999999876432222222222347899998 5432 333 33456888888876321
Q ss_pred CCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEE-EEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCcc
Q 003208 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 192 (839)
.....+..--.....+++.+ .+..|+ +-...+.|.+.++........+..... .-..+.+ ++.
T Consensus 74 ---------~~~~v~~~~~~~P~GlAvD~---~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~-~P~~Iav---dp~ 137 (619)
T 3s94_A 74 ---------SVQNVVVSGLLSPDGLACDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD-QPRAIAL---DPS 137 (619)
T ss_dssp ----------CEEEECSSCSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCCEEE---ETT
T ss_pred ---------ceEEEEeCCCCCcCeEEEEe---cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCC-CCceEEE---ecC
Confidence 01112222224578899987 555454 445578899999865433222211110 0111222 233
Q ss_pred -ceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEE-EecCCCCeEEEEEcCCCC
Q 003208 193 -ALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGS 269 (839)
Q Consensus 193 -~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~ 269 (839)
+.+.++- +..+.|...++. +..... ....-....+|++++++.
T Consensus 138 ~g~ly~tD~g~~~~I~r~~~d----------------------------------G~~~~~l~~~~~~~P~Glald~~~~ 183 (619)
T 3s94_A 138 SGFMYWTDWGEVPKIERAGMD----------------------------------GSSRFIIINSEIYWPNGLTLDYEEQ 183 (619)
T ss_dssp TTEEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSSCSSEEEEEEETTTT
T ss_pred CCeEEEeccCCCCEEEEEECC----------------------------------CCceEEEEeCCCCCCcEEEEEccCC
Confidence 3333332 122444444443 111111 222345678999999766
Q ss_pred EEEEE-eCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEE-eCCCeEEEEcC-CCceEEEe
Q 003208 270 KLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 270 ~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~-~~dg~i~vw~~-~~~~~~~~ 343 (839)
.|+.+ ...+.|...|+..... +. ...+.......+++.+..++.+ ...+.|...|. +++....+
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~~~------~~----~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGTNR------QA----VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEEEEETTTCCEEEESSSCCEE------C-------------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEEEEeCCCCeEEEecCCCCcc------EE----EEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEE
Confidence 66555 4556788888865433 10 1111112223555554444444 45677888887 55544443
No 310
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.53 E-value=3.8 Score=41.06 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCEEEEEeC------CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCC-----CeEEEEcC
Q 003208 267 CGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGS 335 (839)
Q Consensus 267 ~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~d-----g~i~vw~~ 335 (839)
+++.++.|+. -..+.+||+.+..- ..+. .+........++.+.+..++.|+.+ ..+.+||+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW------KDLA--PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEE------EECC--CCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence 5555666653 23588899877543 1111 1111111122333456666777654 35677887
Q ss_pred CCceEEEeecccC-CceEEEEEccCCCEEEEEeCC
Q 003208 336 DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 336 ~~~~~~~~~~h~~-~~i~~~~~~~~~~~l~t~~~d 369 (839)
....-..+..... +.-.+++. .++++++.||.+
T Consensus 230 ~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 230 KTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp TTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCeEEECCCCCCcccceEEEE-ECCEEEEECCee
Confidence 3322222221111 11112222 355677777754
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.44 E-value=4.3 Score=40.22 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=16.4
Q ss_pred CCcEEEEEeCCC-----cEEEEecCCCce
Q 003208 146 GNRSLAIGCSDN-----SIRVWDISNSSI 169 (839)
Q Consensus 146 ~~~~las~~~d~-----~i~vwd~~~~~~ 169 (839)
++.+++.|+.++ .+.+||+.+.+-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 667777777553 577888876643
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.19 E-value=0.12 Score=58.73 Aligned_cols=195 Identities=8% Similarity=-0.100 Sum_probs=101.8
Q ss_pred cceEEEEEeeccCCCcEEEEE-eCCCcEEEEecCC----CceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEE
Q 003208 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISN----SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~-~~d~~i~vwd~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~v 207 (839)
..+.+++|.+ ....|+.+ ...+.|+.+++.. ......+..... ....+++ ....+.++++-...+.|.+
T Consensus 406 ~~p~gla~d~---~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~-~P~glav--D~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAV--DWIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEET---TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEEC--CCSSSBCEECCTTTSCEEE
T ss_pred cceEEEcccc---ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC-CcceEEE--EeeCCcEEEEeccCCeEEE
Confidence 3467789988 66666554 3457888888864 111111111100 0011222 0123444455455677887
Q ss_pred EEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEc
Q 003208 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D-RSARIWEV 285 (839)
Q Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d-~~i~iwd~ 285 (839)
.++. .......+.........|+++|.+.+|+.+.. . +.|...++
T Consensus 480 ~d~d---------------------------------g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 480 ADTK---------------------------------GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp EBSS---------------------------------SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred EecC---------------------------------CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 7765 11111112222345678899987665555432 2 67777776
Q ss_pred ccCccCCCCCceeeeceEeeccccceEEeEEC---CCEEEEEeCCCeEEEEcCCCceEEEeeccc--CCceEEEEEccCC
Q 003208 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI--GRGIWRCLYDSLS 360 (839)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~h~--~~~i~~~~~~~~~ 360 (839)
..... +. .....-.....|+++ +.+.++-...+.|.++++++.....+.... ......|++..+
T Consensus 527 dG~~~------~~----l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~- 595 (699)
T 1n7d_A 527 NGVDI------YS----LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED- 595 (699)
T ss_dssp SSCCC------CE----ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-
T ss_pred CCCCe------eE----EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-
Confidence 54322 10 111112345567786 345555566788999999665444443211 112345666544
Q ss_pred CEEEEEeCCCcEEEEec
Q 003208 361 SLLVTAGFDSAIKVHQF 377 (839)
Q Consensus 361 ~~l~t~~~dg~i~iw~~ 377 (839)
.++++....+.|..++.
T Consensus 596 ~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 596 KVFWTDIINEAIFSANR 612 (699)
T ss_dssp EEEEECSTTTCEEEEET
T ss_pred EEEEEeCCCCeEEEEEc
Confidence 45555556678888886
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.98 E-value=2.1 Score=44.02 Aligned_cols=155 Identities=13% Similarity=0.112 Sum_probs=92.5
Q ss_pred eEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEecc-CCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC
Q 003208 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (839)
Q Consensus 89 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~ 167 (839)
.-+.+..++.||.-++.... . .+.+..-. ---+.|..+..+| +|++||..+ +..|.|-.+..+
T Consensus 33 t~i~~a~~n~iR~~~i~~~~----~--------Yk~L~~~~~i~f~~i~qlvlSp---sG~lLAl~g-~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 33 TRIVFIQDNIIRWYNVLTDS----L--------YHSLNFSRHLVLDDTFHVISST---SGDLLCLFN-DNEIFVMEVPWG 96 (452)
T ss_dssp TEEEEEETTEEEEEETTTCS----S--------CEEEECTTTCCCCTTCEEEECT---TSSEEEEEC-SSEEEEEECCTT
T ss_pred CEEEEEECCEEEEEECCCCC----c--------ceEEecCcccccCceeEEEECC---CCCEEEEec-CCeEEEEEecCc
Confidence 34455556788877776322 0 22222211 0123578899999 999999886 568888887632
Q ss_pred c------------eEEEEecC-----CceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCC
Q 003208 168 S------------IILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (839)
Q Consensus 168 ~------------~~~~~~~~-----~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 230 (839)
. ..+.+.-. ....+..+.||..+..+..|++-+.|+.|++||+......|.
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~------------ 164 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI------------ 164 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE------------
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc------------
Confidence 1 12223211 134577888888888889999999999999999983221110
Q ss_pred CCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEE
Q 003208 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSARI 282 (839)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~d~~i~i 282 (839)
.+- .......+......|.+++|.+++-.|...+ ..|.|+-
T Consensus 165 -------~L~----k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 165 -------VLN----KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp -------EES----CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred -------chh----ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 000 0001112234457788999988765555544 5555543
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.90 E-value=9.8 Score=42.29 Aligned_cols=231 Identities=12% Similarity=-0.009 Sum_probs=125.8
Q ss_pred ceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE-EcCcEEEEEEeeccCCCCCCC
Q 003208 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (839)
Q Consensus 36 ~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~ 114 (839)
.+|+-+....|+..++.+......+....-..+.+|+|. +.++ .++.+ ..++.|..++++...
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d-------~~~~---~lywtD~~~~~I~r~~~~g~~------ 70 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFD-------VTDN---RIYWTDISLKTISRAFMNGSA------ 70 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCS------
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEE-------CCCC---EEEEEECCCCeEEEEECCCCC------
Confidence 466666888999999987654333332222357899998 5432 44443 457888888775321
Q ss_pred CCccccceeeeEeccCCCcceEEEEEeeccCCCc-EEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCc-c
Q 003208 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~ 192 (839)
.+.+ +..-......+++.+ .+. +.++-...+.|.+.++........+.... ..-..+.+ .| .
T Consensus 71 -------~~~v--~~~g~~~P~GlAvD~---~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~iav---dp~~ 134 (628)
T 4a0p_A 71 -------LEHV--VEFGLDYPEGMAVDW---LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-DSPRALAL---DPAE 134 (628)
T ss_dssp -------CEEE--ECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-CCEEEEEE---ETTT
T ss_pred -------cEEE--EeCCCCCcceEEEEe---CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-CCcccEEE---ccCC
Confidence 1111 111123467888886 544 44555556789999886543222221111 11122333 23 3
Q ss_pred ceEEEEe-ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCCeEEEEEcCCCCEE
Q 003208 193 ALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (839)
Q Consensus 193 ~~~l~sg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 271 (839)
+.+..+- +..+.|...++. +.....+...-....+|+++++++.|
T Consensus 135 G~lY~tD~g~~~~I~r~~~d----------------------------------G~~~~~l~~~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMD----------------------------------GSERTTLVPNVGRANGLTIDYAKRRL 180 (628)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSCSSEEEEEEETTTTEE
T ss_pred CeEEEeCCCCCCEEEEEeCC----------------------------------CCceEEEECCCCCcceEEEccccCEE
Confidence 3333332 123455555554 11122222344678899999987766
Q ss_pred EEEe-CCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEE-EEeCCCeEEEEcC-CCceEEEe
Q 003208 272 VSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFII-TAGEDCTCRVWGS-DGKQLKMI 343 (839)
Q Consensus 272 ~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~-s~~~dg~i~vw~~-~~~~~~~~ 343 (839)
+.+. ..+.|...|+..... + .+.........+++.+..++ +-...+.|...|. +++....+
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~------~-----v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR------E-----VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC------E-----EEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEECCCCEEEEEcCCCCce------E-----EeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence 6554 567888888876432 1 22222234456776644444 4445788888886 55544444
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.87 E-value=5.7 Score=39.49 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecC-----CeEEEEEee
Q 003208 146 GNRSLAIGCSD-----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVD 211 (839)
Q Consensus 146 ~~~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d-----g~i~vw~~~ 211 (839)
++.+++.|+.+ ..+.+||..+.+-...-..+......++.. .++.+++.|+.+ ..+.+||+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV----LNRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE----ETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE----ECCEEEEEeCCCCCCcCceEEEEeCC
Confidence 56677776643 468889987664332211111111112221 245566666654 457777765
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.83 E-value=3.8 Score=40.80 Aligned_cols=103 Identities=12% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCC-----CeEEEEcCC
Q 003208 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (839)
Q Consensus 267 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~d-----g~i~vw~~~ 336 (839)
+++.++.|+.+ ..+.+||+.+..- ..+. .+........++.+.+..++.|+.+ ..+.+||+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEW------RMIT--AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeE------eeCC--CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 45566666654 4588888876543 1111 1111111122333446666677654 568889884
Q ss_pred CceEEEeecccC-CceEEEEEccCCCEEEEEeCCC-----cEEEEecC
Q 003208 337 GKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (839)
Q Consensus 337 ~~~~~~~~~h~~-~~i~~~~~~~~~~~l~t~~~dg-----~i~iw~~~ 378 (839)
...-..+..... +.-.+++. -++++++.||.++ .+.+||+.
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 333222221111 11112222 2567777777543 45566663
No 317
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.77 E-value=4.2 Score=41.48 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=12.9
Q ss_pred cceEEEee--CCeeEEEECCC
Q 003208 35 LPFLLAGS--GSQVLLYDLEA 53 (839)
Q Consensus 35 ~~~l~~g~--~~~v~iwd~~~ 53 (839)
+++.+.|. +..+.+||..+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTS
T ss_pred CEEEEEeCcCCCeEEEEcccc
Confidence 45555554 46899999864
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.64 E-value=6.2 Score=39.13 Aligned_cols=102 Identities=12% Similarity=-0.012 Sum_probs=52.9
Q ss_pred ceEEEee---CCeeEEEECCCCee--eeEEeeecCceEEeEEecccccccCCCccceeeEEEEEc-C----cEEEEEEee
Q 003208 36 PFLLAGS---GSQVLLYDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELN 105 (839)
Q Consensus 36 ~~l~~g~---~~~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~----~~i~iw~~~ 105 (839)
.+++.|. ...+.+||..+.+= +..+... . .-++++.. ++ .+++.+| + ..+.+||+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~-r-~~~~~~~~--------~~----~lyv~GG~~~~~~~~~~~~d~~ 78 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-R-RDAACVFW--------DN----VVYILGGSQLFPIKRMDCYNVV 78 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCC-C-BSCEEEEE--------TT----EEEEECCBSSSBCCEEEEEETT
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcc-c-ceeEEEEE--------CC----EEEEEeCCCCCCcceEEEEeCC
Confidence 4555554 25799999987652 2211111 1 11222222 22 4555544 2 567777776
Q ss_pred ccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC------CcEEEEecCCCce
Q 003208 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSI 169 (839)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d------~~i~vwd~~~~~~ 169 (839)
+.. +..+..+......-..+. - ++.+++.|+.+ ..+.+||..+.+-
T Consensus 79 ~~~-------------W~~~~~~p~~r~~~~~~~--~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 79 KDS-------------WYSKLGPPTPRDSLAACA--A---EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTE-------------EEEEECCSSCCBSCEEEE--E---TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCe-------------EEECCCCCccccceeEEE--E---CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 543 555544433222222222 2 66777777765 4688999887653
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.61 E-value=3.8 Score=49.09 Aligned_cols=272 Identities=12% Similarity=0.097 Sum_probs=139.6
Q ss_pred CcceEEEee----CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCC
Q 003208 34 SLPFLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (839)
Q Consensus 34 ~~~~l~~g~----~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~ 109 (839)
+.+++.+-. +..|.|.|+.++..+.+-..... +...+ |.. ..++.-.+.++.|+++++..
T Consensus 34 SDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~Ad----sAIMn-------P~~----~iiALrag~~lQiFnl~~k~- 97 (1630)
T 1xi4_A 34 SDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMN-------PAS----KVIALKAGKTLQIFNIEMKS- 97 (1630)
T ss_pred cCceEEEEecCCCCceEEEEECCCCCCcccccccch----hhccC-------CCc----ceEEEecCCeEEEeehHHhh-
Confidence 357777633 35899999988765422221111 12234 554 67777778999999998743
Q ss_pred CCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCC-ceEEEEecC---CceeEEEEe
Q 003208 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEVHSP---ERCLLYSMK 185 (839)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~-~~~~~~~~~---~~~~~~s~~ 185 (839)
.+....- ...|.--.|- +.+.|+..+ +..|.-|++... .+.+.+..+ ..+.+....
T Consensus 98 --------------klks~~~-~e~VvfWkWi----s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~ 157 (1630)
T 1xi4_A 98 --------------KMKAHTM-TDDVTFWKWI----SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYR 157 (1630)
T ss_pred --------------hhccccc-CCCceEEEec----CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEee
Confidence 1222221 2345545554 344555544 568999999642 221111111 012222222
Q ss_pred eccCCccceEEEEe-------ecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCCC
Q 003208 186 LWGDNLEALRIASG-------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (839)
Q Consensus 186 ~~~~~~~~~~l~sg-------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 258 (839)
. +++..+++.. ...|.+.+|+.+ .+.-+.+.||.+.
T Consensus 158 ~---d~~~kW~~l~gi~~~~~~v~G~mQLyS~e----------------------------------r~~sQ~iegha~~ 200 (1630)
T 1xi4_A 158 T---DAKQKWLLLTGISAQQNRVVGAMQLYSVD----------------------------------RKVSQPIEGHAAS 200 (1630)
T ss_pred e---CCCCCeEEEEeeccCCCcccceeeeeecc----------------------------------cccchhhhHhHhh
Confidence 1 4555555432 244778888776 2333345566554
Q ss_pred eEEEEEc--CCCCEEEEEeC----CCcEEEEEcccC-ccCCCCCceeeec-eEeeccccceEEeEEC--CCEEEEEeCCC
Q 003208 259 IFRIEWS--SCGSKLVSVSD----DRSARIWEVRAE-YWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDC 328 (839)
Q Consensus 259 V~~l~~~--~~~~~l~s~s~----d~~i~iwd~~~~-~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~--~~~l~s~~~dg 328 (839)
-..+... +....+++-.. .+.+.|-++... ........+.... +....-..-..++..+ -+.+..-+.-|
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G 280 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 280 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCc
Confidence 4444332 11122322111 157888887543 1100111111110 0000112233455555 36777888899
Q ss_pred eEEEEcC-CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 329 ~i~vw~~-~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
.+.++|+ ++.++..-+-... +|...+.+....-+++....|.|.-..++.
T Consensus 281 ~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred eEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 9999999 7877765554444 566555554434455556777776666643
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.55 E-value=7.3 Score=39.67 Aligned_cols=72 Identities=11% Similarity=-0.003 Sum_probs=44.5
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEcCcEEEEEEeeccCCCCCCCCCccccceeeeEecc---CCCcceEEEEEeec
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---RLSHWVFDVCFLKV 143 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~I~~~~~~~~ 143 (839)
...+|+|. |+| .++++-.++.|++++ . .. .+.+..+. .-......|+++|
T Consensus 32 ~P~~ia~~-------pdG----~l~V~e~~g~I~~i~-~-g~-------------~~~~~~~~v~~~g~~~p~gia~~p- 84 (352)
T 2ism_A 32 VPWALAFL-------PDG----GMLIAERPGRIRLFR-E-GR-------------LSTYAELSVYHRGESGLLGLALHP- 84 (352)
T ss_dssp CEEEEEEC-------TTS----CEEEEETTTEEEEEE-T-TE-------------EEEEEECCCCCSTTCSEEEEEECT-
T ss_pred CceEEEEc-------CCC----eEEEEeCCCeEEEEE-C-CC-------------ccEeecceEeecCCCCceeEEECC-
Confidence 46789999 888 666666678888887 2 11 22222221 1234678999999
Q ss_pred cCC---CcEEEEEeC-C-----CcEEEEecCCC
Q 003208 144 CNG---NRSLAIGCS-D-----NSIRVWDISNS 167 (839)
Q Consensus 144 ~~~---~~~las~~~-d-----~~i~vwd~~~~ 167 (839)
+ +..|..+.. . +.|..++....
T Consensus 85 --df~~~g~lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 85 --RFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp --TTTTSCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred --CCCCCCEEEEEEecCCCCCccEEEEEEeCCC
Confidence 6 444444332 2 56777877643
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.14 E-value=4.3 Score=48.67 Aligned_cols=188 Identities=9% Similarity=0.079 Sum_probs=112.6
Q ss_pred EEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCCeEEEEEeecccccc
Q 003208 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (839)
Q Consensus 138 ~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~ 217 (839)
...+| ..+.+|.-. ..++.|+|+++.+.+....-++..+.|. +.+++..-|+|. ..|+-|++.. .
T Consensus 71 AIMnP---~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWk----Wis~~~l~lVT~---~aVyHW~~~~-~--- 135 (1630)
T 1xi4_A 71 AIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWK----WISLNTVALVTD---NAVYHWSMEG-E--- 135 (1630)
T ss_pred hccCC---CcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEE----ecCCCeeEEEcC---CeEEEeccCC-C---
Confidence 34577 777777654 6789999999988887776655433333 224444445554 6799999862 1
Q ss_pred CCCCCCCccCCCCCCCceeeEeecccccceeeEEEecC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcc
Q 003208 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH----EGSIFRIEWSSCGSKLVSVS-------DDRSARIWEVR 286 (839)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s-------~d~~i~iwd~~ 286 (839)
..|...+.-| ...|..-..+++.++++..| ..|.+.+|..+
T Consensus 136 ----------------------------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 136 ----------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred ----------------------------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 1111112212 35677777888888876543 35778888887
Q ss_pred cCccCCCCCceeeeceEeeccccceEEeEEC----CCEEEEEeC----CCeEEEEcCCC----ceE------EEeecc--
Q 003208 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGE----DCTCRVWGSDG----KQL------KMIKEH-- 346 (839)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~----dg~i~vw~~~~----~~~------~~~~~h-- 346 (839)
.... ..+.||......+... +..+++-.. .+.++|-++.. ... ..+-..
T Consensus 188 r~~s-----------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~ 256 (1630)
T 1xi4_A 188 RKVS-----------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (1630)
T ss_pred cccc-----------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence 6544 2566776555444443 122333222 26888888721 111 011111
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003208 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (839)
Q Consensus 347 ~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~ 379 (839)
...-..++..++.-..+...+.-|.+.++|+.+
T Consensus 257 ~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred ccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 011123677777777888889999999999954
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.93 E-value=8.1 Score=38.47 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=15.9
Q ss_pred CCCEEEEEeCCC-----cEEEEEcccCcc
Q 003208 267 CGSKLVSVSDDR-----SARIWEVRAEYW 290 (839)
Q Consensus 267 ~~~~l~s~s~d~-----~i~iwd~~~~~~ 290 (839)
+++.++.|+.++ .+.+||+.+..-
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 556677776654 477888877543
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.83 E-value=6.2 Score=39.00 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=47.7
Q ss_pred cEEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCC-----CcEEEEecCCCceEE
Q 003208 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD-----NSIRVWDISNSSIIL 171 (839)
Q Consensus 97 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d-----~~i~vwd~~~~~~~~ 171 (839)
..+.+||+.+.. ++.+..+......- +++. . ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 128 ~~~~~~d~~~~~-------------W~~~~~~p~~r~~~-~~~~-~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 128 TSMERYDPNIDQ-------------WSMLGDMQTAREGA-GLVV-A---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp CEEEEEETTTTE-------------EEEEEECSSCCBSC-EEEE-E---TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ceEEEEcCCCCe-------------EEECCCCCCCcccc-eEEE-E---CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 467777776533 55554443222221 2222 2 66777777654 468899987764433
Q ss_pred EEecCCceeEEEEeeccCCccceEEEEeecC-----CeEEEEEee
Q 003208 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVD 211 (839)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~d-----g~i~vw~~~ 211 (839)
.-..+......++.. .++.+++.|+.+ ..+.+||+.
T Consensus 190 ~~~~p~~r~~~~~~~----~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL----LNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp ECCCSSCCBSCEEEE----ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCCCCcccccceEEE----ECCEEEEEeCCCCCcccceEEEEeCC
Confidence 211111111111221 245666667654 467788876
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.42 E-value=10 Score=38.40 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=79.2
Q ss_pred eCCeeEEEECCCC-eeeeEEe--e--e--cCceEEeEEecccccccCCCccceeeEEEEE---cCcEEEEEEeeccCCCC
Q 003208 42 SGSQVLLYDLEAG-TLIRPFQ--V--F--HGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPN 111 (839)
Q Consensus 42 ~~~~v~iwd~~~~-~~~~~~~--~--~--~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~iw~~~~~~~~~ 111 (839)
.+|.|.++|.++. ....++. . + .....++|.+.+. .++. ..++++- ++.+|.+|+++....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d-----~dg~--~~L~Vvnh~~~~s~ielf~~d~~~~-- 151 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID-----DDNT--VYLLVVNHPGSSSTVEVFKFQEEEK-- 151 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC-----TTCC--EEEEEEECSTTCCEEEEEEEETTTT--
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC-----CCCc--EEEEEEECCCCCCeEEEEEEECCCC--
Confidence 4789999998742 1122232 2 1 2346899998732 2332 1344553 257899999986431
Q ss_pred CCCCCccccceeeeEeccCCC-cceEEEEEeeccCCCcEEEEEeC-----------------CCcEEEEecCCCceEEEE
Q 003208 112 SQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCS-----------------DNSIRVWDISNSSIILEV 173 (839)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~las~~~-----------------d~~i~vwd~~~~~~~~~~ 173 (839)
....+..+.+.. ...+++++.+ ++.+.++..- .+.|.-+|. ++.....
T Consensus 152 ---------~~~~~~~~~g~~~~~pND~~v~~---~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~ 217 (355)
T 3sre_A 152 ---------SLLHLKTIRHKLLPSVNDIVAVG---PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVA 217 (355)
T ss_dssp ---------EEEEEEEECCTTCSSEEEEEEEE---TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEE
T ss_pred ---------EEEEEeccccCCCCCCceEEEeC---CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEee
Confidence 134455555433 4578999999 8887776531 234444444 2221111
Q ss_pred ecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEee
Q 003208 174 HSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (839)
Q Consensus 174 ~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~ 211 (839)
..- .....+++ +|++..+..+ +..+.|..|++.
T Consensus 218 ~~l--~~pNGia~---spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 218 EGF--DFANGINI---SPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEE--SSEEEEEE---CTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cCC--cccCcceE---CCCCCEEEEEeCCCCeEEEEEEC
Confidence 110 11223333 6888666554 567899999986
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.09 E-value=2.6 Score=39.08 Aligned_cols=154 Identities=9% Similarity=-0.022 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEee---ccccceEEeEECC-CEEEEEeCCCeEEE
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY---GHNARVWDCCLTD-SFIITAGEDCTCRV 332 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~l~s~~~dg~i~v 332 (839)
..+..++|+|++...+. .++.+.-.+..+... .......+.. +-.. ..++.|.+ ..|... .||.|.-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----CCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCc-----ccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEE
Confidence 46779999998886555 667665555433222 1111100111 1111 35667773 334444 6799988
Q ss_pred EcC--CCce-----EEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCc-CccCcCCCCcccccCCCcceEEee
Q 003208 333 WGS--DGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIK 404 (839)
Q Consensus 333 w~~--~~~~-----~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (839)
++. ++.. -.++....-+.+..|.+.|+|.+.+.. |+.+.-...... ....+.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~------------------ 171 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLA------------------ 171 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHH------------------
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccc------------------
Confidence 887 2211 111111111258899999999876665 777543322110 000000
Q ss_pred cCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEE
Q 003208 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (839)
Q Consensus 405 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~ 445 (839)
.........-...+.+.|.+++.+.... +|.++..
T Consensus 172 -----~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~~ 206 (236)
T 1tl2_A 172 -----RATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYED 206 (236)
T ss_dssp -----HCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred -----ccceeccCCcceEEEEEECCCCcEEEEe-CCeEEec
Confidence 0000000112245667799999888887 8877643
No 326
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=91.99 E-value=15 Score=39.18 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=88.0
Q ss_pred eeEEEEecCC-CCCCCcceEEEee-CCeeEEEECCCCeeeeEEeeec--CceEEeEEe-------cccccccCCCcccee
Q 003208 20 ISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH--GIRLHGISC-------NFINCTEGSVSTRVT 88 (839)
Q Consensus 20 Vt~l~f~~~~-~~~~~~~~l~~g~-~~~v~iwd~~~~~~~~~~~~~~--~~~v~~i~~-------~~~~~~~~~~~~~~~ 88 (839)
...|+|+ | + .+++.++-. ...|++.|.+++.+...+.... -.....|+| + ++|+
T Consensus 141 p~~la~d--p~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-------~~G~--- 205 (496)
T 3kya_A 141 NGRLAFD--PLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-------DEAE--- 205 (496)
T ss_dssp EEEEEEE--TTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-------CTTC---
T ss_pred CCEEEEc--cCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-------CCCC---
Confidence 4688999 8 4 244555544 4689999988776654443321 225889999 7 7773
Q ss_pred eEEEEEc-Cc----E--EEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcE-EEEEeCCCcEE
Q 003208 89 FEVALFG-EK----R--VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIR 160 (839)
Q Consensus 89 ~~l~~~~-~~----~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~-las~~~d~~i~ 160 (839)
.++++.. ++ . |.+++..... .|.. ......+..+. ....++++| ++.. +++-..++.|.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G----~~~~--~~~~~~v~~~~----~p~giavdp---~~g~LYvtd~~~g~V~ 272 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADG----TFDD--RSDIQLIAAYK----QCNGATIHP---INGELYFNSYEKGQVF 272 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTS----CCST--TSCEEEEEEES----CCCCEEECT---TTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCC----ceee--cccceeeccCC----CceEEEEcC---CCCeEEEEECCCCEEE
Confidence 3555533 31 2 4444422201 1110 00012222322 345678888 5544 45555678899
Q ss_pred EEecC-------CCce-----------EEE-EecCCceeEEEEeeccCCccceE-EEEeecCCeEEEEEee
Q 003208 161 VWDIS-------NSSI-----------ILE-VHSPERCLLYSMKLWGDNLEALR-IASGTIYNEIIVWKVD 211 (839)
Q Consensus 161 vwd~~-------~~~~-----------~~~-~~~~~~~~~~s~~~~~~~~~~~~-l~sg~~dg~i~vw~~~ 211 (839)
.+|+. ++.. ... +..+....-+.+++ ++++.. .++-+..+.|+.++..
T Consensus 273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~---~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFI---HPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecccccccccCceeecccccccccccceeEecCCCCCceEEEE---cCCCCEEEEEeCCCCEEEEEecC
Confidence 99987 4543 112 22222222344555 578874 4455567888887765
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.55 E-value=13 Score=37.74 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=20.3
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEe
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd 163 (839)
.-..++|.| ++.+++ +..++.|.+++
T Consensus 32 ~P~~ia~~p---dG~l~V-~e~~g~I~~i~ 57 (352)
T 2ism_A 32 VPWALAFLP---DGGMLI-AERPGRIRLFR 57 (352)
T ss_dssp CEEEEEECT---TSCEEE-EETTTEEEEEE
T ss_pred CceEEEEcC---CCeEEE-EeCCCeEEEEE
Confidence 357899999 988555 45679999998
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.16 E-value=16 Score=37.02 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=15.8
Q ss_pred CCcEEEEEeC-C---------CcEEEEecCCCc
Q 003208 146 GNRSLAIGCS-D---------NSIRVWDISNSS 168 (839)
Q Consensus 146 ~~~~las~~~-d---------~~i~vwd~~~~~ 168 (839)
++.+++.|+. + +.+.+||..+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5666777765 2 468889987754
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.42 E-value=24 Score=34.95 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCcEEEEEeCC-------CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeec------CCeEEEEEee
Q 003208 146 GNRSLAIGCSD-------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVD 211 (839)
Q Consensus 146 ~~~~las~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~------dg~i~vw~~~ 211 (839)
++.+++.|+.+ ..+.+||..+.+-...-..+....-.++.. .++.+++.|+. ...+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS----HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE----ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE----ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56677777754 347888887664332211121111111211 24556666654 2357777776
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.90 E-value=6.1 Score=36.61 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred ceEEEEEecCCeEEEEeccceEEEEEecCCCCcee
Q 003208 421 YVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNW 455 (839)
Q Consensus 421 ~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 455 (839)
.++.++|.|++.+++. .+|.++..+..+.....|
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W 75 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNW 75 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCH
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccc
Confidence 4779999999999888 889998877655444334
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=86.75 E-value=29 Score=35.16 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=22.6
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCc
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~ 168 (839)
.....|+|.| ++.+++ +..++.|++++. +++
T Consensus 29 ~~P~~ia~~p---dG~l~V-~e~~g~I~~~d~-~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLG---GGRYLV-TERPGRLVLISP-SGK 59 (354)
T ss_dssp SCEEEEEEEE---TTEEEE-EETTTEEEEECS-SCE
T ss_pred CCCeEEEEcC---CCeEEE-EeCCCEEEEEeC-CCc
Confidence 3467899999 888555 456799999973 454
No 332
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=85.82 E-value=33 Score=34.91 Aligned_cols=168 Identities=11% Similarity=0.138 Sum_probs=87.4
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEE-EecCCeEEE
Q 003208 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH-LTSEDTLYI 435 (839)
Q Consensus 357 ~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~ 435 (839)
-|+..++++.+.+|.|+--.+..-..+.-.+.. +..+.. ...+.+..+. .+..+.+++
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g----------~~~~~l-----------ke~D~l~~~~~~~t~d~ll~ 62 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRG----------RSAAST-----------KEEDFIDQLWLVNTHDTLLT 62 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCC----------SEEEEC-----------SCCCCEEEEEEECTTCEEEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCC----------ceeccc-----------CCCCEEEEEEEecCCCEEEE
Confidence 467789999999999998766321000000000 001110 0112333333 334557899
Q ss_pred EeccceEEEEEecCCCCcee----EEE---eeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC
Q 003208 436 ATNHGYLYHTKLCDMDSVNW----NKI---LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (839)
Q Consensus 436 ~~~~g~i~~~~~~~~~~~~~----~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~ 508 (839)
.++.|.++.++.++.....| .++ +....+..+..+-.... .....+++.++..|.++.-.++.-....
T Consensus 63 fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~-----~~~~~~ll~~T~~G~vKrt~l~e~~~~~ 137 (370)
T 3l6v_A 63 FTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE-----YADNRYVFMATRNGTVKKTPLSEFAFRL 137 (370)
T ss_dssp EETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESC-----CCTTCEEEEEETTSEEEEEEGGGGCSCC
T ss_pred EeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEecc-----CCCCcEEEEEeCCCeEEEeEHHHhhccc
Confidence 99999999998876543322 111 12233444554433222 1234688899999999988875432211
Q ss_pred -cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecC
Q 003208 509 -QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (839)
Q Consensus 509 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~ 554 (839)
.....++. .....+..+..+ .+...++..+.+|.+..+....
T Consensus 138 ~~G~~ai~L--~~~d~lv~v~~~--~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 138 ARGKIAINL--DEGDALVGVALT--DGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp TTCEESSCC--CTTCCEEEEEEE--CSCCEEEEEETTSEEEEEEGGG
T ss_pred CCceEEEEe--CCCCEEEEEEEe--CCCceEEEEeCCCeEEEEEccc
Confidence 11112221 123344443332 3344556666778877777654
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=85.75 E-value=32 Score=34.79 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=57.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECC-----CEEEEEeC----
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGE---- 326 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~~~---- 326 (839)
-.....|+|.|+|+ |+.+..++.|++++...... +..+. ....-......+++++ ..|+.+..
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~-----~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKL-----VASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSSCEEE-----EEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceE-----eeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 45678999999997 55556679999887332101 11000 0111234578899984 35555443
Q ss_pred C----CeEEEEcCCCc------e--E-EEeecccCCceEEEEEccCCCEEEEEeC
Q 003208 327 D----CTCRVWGSDGK------Q--L-KMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (839)
Q Consensus 327 d----g~i~vw~~~~~------~--~-~~~~~h~~~~i~~~~~~~~~~~l~t~~~ 368 (839)
+ +.|..|+.++. . + ..+..........|+|.|||.+.++.+.
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 3 56777776332 1 1 1122111101346899999987666543
No 334
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.96 E-value=33 Score=34.20 Aligned_cols=169 Identities=12% Similarity=0.122 Sum_probs=95.2
Q ss_pred EecCCeEEEEeccceEEEEEecCCCCceeE----E---EeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEE
Q 003208 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWN----K---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (839)
Q Consensus 427 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~ 499 (839)
-+..+.+++.++.|.++.++.++.....|. + ++....+..+..+-.... .+....+++.+.+|.++.-
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRG-----YTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESS-----TTSSSEEEEEETTSEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEecc-----CCCCCEEEEEcCCCEEEEe
Confidence 344668899999999999988776544321 1 122223444554433332 1345789999999999988
Q ss_pred EEcCCCCCCc-ceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeec--CCCCcccccCCccceeeeeeccc
Q 003208 500 RVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC--DPFSSVCYESSKTNNVFLVAEFS 576 (839)
Q Consensus 500 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~ 576 (839)
.+..-....+ ....+.. .....+..++.+ .....|+..+..|.+..+... .-...... ..... .+.
T Consensus 125 ~l~~~~~~~r~G~~~i~l--ke~D~lv~~~~~--~~~d~ill~T~~G~~~rf~~~~~eip~~gr~----a~Gv~---~i~ 193 (327)
T 3uc1_A 125 KLTDFDSNRSGGIVAVNL--RDNDELVGAVLC--SAGDDLLLVSANGQSIRFSATDEALRPMGRA----TSGVQ---GMR 193 (327)
T ss_dssp EGGGGCCCCSSCEESCBC--CTTCCEEEEEEE--CTTCEEEEEETTSEEEEEECCTTTSCCCCTT----SBCEE---SSC
T ss_pred EHHHhhccccCceEEEEE--CCCCEEEEEEEe--cCCCEEEEEECCCeEEEEECcccccCcCCcC----CCCee---eec
Confidence 8765322111 1111111 123334444333 233456666678988877776 32211100 00000 111
Q ss_pred cccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 577 ~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
......|.++...+++..|++.+..|.++.-.++.
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 12245677777666677899999999999988775
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.60 E-value=6.7 Score=39.44 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=41.4
Q ss_pred CcEEEEEeCCCcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEe-ecCCeEEEEEee
Q 003208 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (839)
Q Consensus 147 ~~~las~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg-~~dg~i~vw~~~ 211 (839)
+.+++.++.||.|.-.|..+|+..-+++.................++..++.. +.||.|+.++..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 34788899999999999999999988875421111121110011133444443 689999999876
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.47 E-value=40 Score=34.03 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=21.0
Q ss_pred ceEEEEEeeccCCCc-EEEEEeCCCcEEEEec
Q 003208 134 WVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDI 164 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~-~las~~~d~~i~vwd~ 164 (839)
....|+|.| ++. ++ .+...+.|++++.
T Consensus 19 ~P~~i~~~p---dG~~l~-V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAFLP---DNHGML-ITLRGGELRHWQA 46 (353)
T ss_dssp SEEEEEECS---TTCCEE-EEETTTEEEEEET
T ss_pred CcEEEEEcC---CCCEEE-EEeCCceEEEEeC
Confidence 357899999 998 55 4556789999885
No 337
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.54 E-value=37 Score=32.88 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=93.3
Q ss_pred EecCCeEEEEeccceEEEEEecCCCCceeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCC
Q 003208 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (839)
Q Consensus 427 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~ 506 (839)
....+.++..++.|.++..++++.....|..+ ...+..+..+-. .. . +...+++.+.+|.++-..++.-..
T Consensus 32 ~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~~~e~i~~v~~-~~-----~-~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 32 VPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KSREEKIVGAFI-RE-----K-FGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp EETTSCEEEEETTSEEEEECSHHHHTSEECCC--SSTTCCEEEEEE-GG-----G-SCSEEEEEETTSEEEEEEGGGTTT
T ss_pred ECCCCEEEEEcCCCeEEEEEhhhCccCccccc--CCCCCEEEEEEC-Cc-----C-CCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34456899999999999887766433333322 333444554422 21 1 236888899999999988765431
Q ss_pred CCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEE
Q 003208 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (839)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 586 (839)
.......++. .....+..+..+ .+...++..+..|.+..+....-...... ...... +...-...|..+
T Consensus 103 ~~~G~~~i~l--kegD~l~~~~~~--~~~~~ill~T~~G~~~r~~~~eip~~gR~----a~Gv~~---i~L~~~d~vv~~ 171 (276)
T 3no0_A 103 KAQGMPIIKL--TEGDEVVSIASS--VDETHILLFTKKGRVARFSVREVPPSTPG----ARGVQG---IKLEKNDETSGL 171 (276)
T ss_dssp CSTTEECSCC--CTTCCEEEEEEC--CSSCEEEEEETTSEEEEEEGGGSCBCCTT----CCCEEC---CCCCTTCCEEEE
T ss_pred hcCCeEEEec--CCCCEEEEEEEe--CCCCEEEEEECCCEEEEEEhhhCCCcCCC----CCCEEE---EccCCCCEEEEE
Confidence 1111111111 122334443332 34456666778898887776543221110 000010 111124557777
Q ss_pred eeecCCCEEEEecCCccEEEEeccc
Q 003208 587 DASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 587 ~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
...+++..|++.+..|.++...++.
T Consensus 172 ~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 172 RIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 6666677888999999999998875
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=81.39 E-value=79 Score=35.93 Aligned_cols=455 Identities=11% Similarity=0.044 Sum_probs=210.2
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
..|.++... .+ + .|..|.+.-+.+||..+.+....... ....|.++... +| .+.++..+
T Consensus 63 ~~i~~i~~d--~~----g-~lWigT~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~--------~g----~lWigt~~- 121 (758)
T 3ott_A 63 TRIYCGVII--DN----T-YLYMGTDNGILVYNYRADRYEQPETD-FPTDVRTMALQ--------GD----TLWLGALN- 121 (758)
T ss_dssp SCEEEEEEE--TT----T-EEEEEETTEEEEEETTTTEECCCSCC-CCSCEEEEEEE--------TT----EEEEEETT-
T ss_pred ceEEEEEEc--CC----C-cEEEEeCCCeEEEeCCCCEEECcccC-CCceEEEEEec--------CC----cEEEEcCC-
Confidence 358888766 55 4 44445555588999887653221111 12235555432 33 34444444
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEec--cCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEec
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~ 175 (839)
-+..++..... .+..... ......|.++.... ++.+.+ |+.. -+..++..+.+.. .+..
T Consensus 122 Gl~~~~~~~~~-------------~~~~~~~~~~l~~~~i~~i~~d~---~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~ 182 (758)
T 3ott_A 122 GLYTYQLQSRK-------------LTSFDTRRNGLPNNTIYSIIRTK---DNQIYV-GTYN-GLCRYIPSNGKFE-GIPL 182 (758)
T ss_dssp EEEEEETTTCC-------------EEEECHHHHCCSCSCEEEEEECT---TCCEEE-EETT-EEEEEETTTTEEE-EECC
T ss_pred cceeEeCCCCe-------------EEEeccCCCCcCCCeEEEEEEcC---CCCEEE-EeCC-CHhhCccCCCceE-EecC
Confidence 56677764322 1111000 01124588887765 666544 5544 4777887665432 2221
Q ss_pred CC-----ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeE
Q 003208 176 PE-----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (839)
Q Consensus 176 ~~-----~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (839)
+. ...+.++.. ..++..|-.|+. +-+..++...+ ......
T Consensus 183 ~~~~~~~~~~i~~i~~---d~~~~~lWigt~-~Gl~~~~~~~~-------------------------------~~~~~~ 227 (758)
T 3ott_A 183 PVHSSQSNLFVNSLLE---DTTRQCVWIGTE-GYLFQYFPSTG-------------------------------QIKQTE 227 (758)
T ss_dssp CCCTTCSSCCEEEEEE---ETTTTEEEEEEE-EEEEEEETTTT-------------------------------EEEEEE
T ss_pred CCccccccceeEEEEE---ECCCCEEEEEEC-CCCeEEcCCCC-------------------------------eEEecc
Confidence 11 112444432 233443334443 45777776511 011111
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceE---eeccccceEEeEEC-CCEEEEEeC
Q 003208 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV---LYGHNARVWDCCLT-DSFIITAGE 326 (839)
Q Consensus 251 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~-~~~l~s~~~ 326 (839)
.+ ....|.++...+++... .|+.+ -+.+++..+... +.+.... ..-....|.++... ...|-.|+.
T Consensus 228 ~l--~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 228 AF--HNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPL------QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EE--EEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCC------EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred CC--CCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcE------EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 12 13458888888777644 44554 477788765432 1110000 00112357887776 344555555
Q ss_pred CCeEEEEcCCCceEEEeec------ccCCceEEEEEccCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcce
Q 003208 327 DCTCRVWGSDGKQLKMIKE------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (839)
Q Consensus 327 dg~i~vw~~~~~~~~~~~~------h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (839)
.| +.+...... ...+.. .....|.++....+|.+.+ |+.+| +..++........+ ..
T Consensus 298 ~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~-------------~~ 360 (758)
T 3ott_A 298 YG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDA-------------IW 360 (758)
T ss_dssp SS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCC-------------EE
T ss_pred Cc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeeccccccccee-------------EE
Confidence 66 545443221 111110 0112588888888776544 45555 55555432110000 00
Q ss_pred EEeecCCCccceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCCceeEEEeeecC-----CCceEEeeecCC
Q 003208 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSE-----GMPIICMDLLSN 475 (839)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~ 475 (839)
+. ...... .-....|.++...+++.+.+++. +.+..++.. ...+........ ...+.++....
T Consensus 361 ~~--~~~~~~-----~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~d~- 428 (758)
T 3ott_A 361 YR--MGDKTY-----PLSHNRIRHIYEDKEQQLWIATD-GSINRYDYA---TRQFIHYNIVDNTGTYNTNWTYYIFEDT- 428 (758)
T ss_dssp EC--TTCSSS-----CCSCSCEEEEEECTTSCEEEEET-TEEEEEETT---TTEEEEEEEECCC--CBSSSEEEEEECT-
T ss_pred ec--cCCcCC-----CCCCCceEEEEECCCCCEEEEeC-CcHhhcCcC---CCcEEEeecCCCcCCCCCceEEEEEEcC-
Confidence 00 000000 00123588888888899999984 567665432 223333221111 12344443322
Q ss_pred CCCCCCCCCcEEEEeCCCccEEEEEEcCCCCC--Ccce--eeeEeecc-ceeEEeeEEEeecCCCeEEEE-eCCCCcEEE
Q 003208 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT--PQLS--FTFTWSAG-IERQLLGTYWCKSLGHRFIFT-ADPKGRLKL 549 (839)
Q Consensus 476 ~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~--~~~~--~~~~~~~~-~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~~ 549 (839)
...|.+|+..+-|..++..+.... .... ..+..... ....+.. .+...+|.+.+. +.. +-|..
T Consensus 429 --------~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~--i~~d~~g~lWi~~~t~-~Gl~~ 497 (758)
T 3ott_A 429 --------AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQ--IIPDNEGNVWVLLYNN-KGIDK 497 (758)
T ss_dssp --------TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEE--EEECTTSCEEEEETTC-SSEEE
T ss_pred --------CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeee--EEEcCCCCEEEEccCC-CCcEE
Confidence 245666776667878775421000 0000 00000000 1111222 334567777663 444 44777
Q ss_pred eeecCCCCcccccCCccceeeeeeccccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 550 WQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
+|..+.... . .... .......+.++....+|.+.+ |+..| +..|+...
T Consensus 498 ~d~~~~~~~-~----------~~~~-~~~~~~~~~~i~~d~~g~lWi-gt~~G-l~~~~~~~ 545 (758)
T 3ott_A 498 INPRTREVT-K----------LFAD-ELTGEKSPNYLLCDEDGLLWV-GFHGG-VMRINPKD 545 (758)
T ss_dssp EETTTTEEE-E----------ECTT-TSCGGGCEEEEEECTTSCEEE-EETTE-EEEECC--
T ss_pred EeCCCCceE-E----------ecCC-CcCCCcccceEEECCCCCEEE-EecCc-eEEEecCC
Confidence 776543210 0 0000 001134577887777787764 44444 77787654
No 339
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=78.92 E-value=58 Score=32.86 Aligned_cols=106 Identities=9% Similarity=-0.075 Sum_probs=61.3
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEEC--
Q 003208 257 GSIFRIEWSSCGSKLVSVSD-----------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 317 (839)
...+.+.+.++|.+.++... .+.|..+|. .+. + .+...-.....++|+
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~------~-----~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV------R-----VVAEGFDFANGINISPD 231 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC------E-----EEEEEESSEEEEEECTT
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE------E-----EeecCCcccCcceECCC
Confidence 46788999999987776541 133444443 222 2 222222346788998
Q ss_pred CCEEEEE-eCCCeEEEEcC--CCce--EEEeecccCCceEEEEEcc-CCCEEEEEeCC-CcEEEEec
Q 003208 318 DSFIITA-GEDCTCRVWGS--DGKQ--LKMIKEHIGRGIWRCLYDS-LSSLLVTAGFD-SAIKVHQF 377 (839)
Q Consensus 318 ~~~l~s~-~~dg~i~vw~~--~~~~--~~~~~~h~~~~i~~~~~~~-~~~~l~t~~~d-g~i~iw~~ 377 (839)
++.++.+ +..+.|..|++ +++. ...+. ..+ ....+++++ +|++.+++..+ +.|..|+.
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g-~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDT-LVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS-EEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCC-CCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 3455544 56788999988 3432 12332 233 467889998 58877766644 34444444
No 340
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=78.08 E-value=57 Score=32.37 Aligned_cols=213 Identities=12% Similarity=0.160 Sum_probs=111.1
Q ss_pred cCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe
Q 003208 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 437 (839)
|+..++++.+.+|.|+--.+..-..+... ... ....+..+..+.-+..+.+++.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~----~~~---------------------lke~D~l~~~~~~~t~d~ll~fT 57 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ----DFA---------------------MKDTDRLLAMLEMNTKDVLLLFT 57 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC----CCC---------------------CCTTCCEEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc----ccc---------------------cCCCCEEEEEEEECCCCEEEEEE
Confidence 56678889999999988765321000000 000 00111123333344566899999
Q ss_pred ccceEEEEEecCCCCceeE-------EEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC--
Q 003208 438 NHGYLYHTKLCDMDSVNWN-------KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-- 508 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~-- 508 (839)
+.|.++.++.++.....|. ..+....+..+..+..... .....+++..+.+|.++.-.++.-....
T Consensus 58 ~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~-----~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~ 132 (323)
T 1wp5_A 58 NKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPIND-----FELNGYFLFVTRNGMVKKTELKHYKAQRYS 132 (323)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESC-----TTSSCEEEEEETTSEEEEEEGGGGCCSCCS
T ss_pred CCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecc-----cCCCceEEEEeCCCeEEEeEHHHhhhcccc
Confidence 9999999888765443321 1112223334444332222 1224578888999999998875432211
Q ss_pred cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEee
Q 003208 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (839)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 588 (839)
.....++.. . ...+..+..+ .+...++..+.+|.+..+....-...... .... ..+...-...|.++..
T Consensus 133 ~G~~ai~l~-e-~d~lv~~~~~--~~~~~i~l~T~~G~~irf~~~ev~~~gR~----a~GV---~~i~L~~~d~Vv~~~~ 201 (323)
T 1wp5_A 133 KPLTGINLK-N-DDQVVDVHLT--DGMNELFLVTHNGYALWFDESEVSIVGVR----AAGV---KGMNLKEGDYIVSGQL 201 (323)
T ss_dssp SCEECSCCC-T-TCCEEEEEEE--CSCSEEEEEETTSEEEEEEGGGSCBCCSS----CCCE---ECCCCCTTCCEEEEEE
T ss_pred CceEEEEeC-C-CCEEEEEEEe--CCCCEEEEEeCCCcEEEEEHHHCcccCCC----CcCE---EEEEeCCCCEEEEEEE
Confidence 111122221 1 2344443322 23345666677888888877643211110 0000 0111122445666655
Q ss_pred ecCCC-EEEEecCCccEEEEeccc
Q 003208 589 SFEDE-VLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 589 s~~~~-~la~gs~dg~i~iw~~~~ 611 (839)
.+++. .|.+.+..|..+..++..
T Consensus 202 ~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 202 ITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EcCCCcEEEEEECCCceEEEEHHH
Confidence 44455 788889999988888775
No 341
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=72.57 E-value=77 Score=31.18 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=93.3
Q ss_pred EEEEEecCCeEEEEeccceEEEEEecCCCCcee----EE---EeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCcc
Q 003208 423 RCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNW----NK---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN 495 (839)
Q Consensus 423 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 495 (839)
..+.-+..+.+++.++.|.++.++.++.....+ .+ .+....+..+..+..... ..+...++..+.+|.
T Consensus 46 ~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 46 RLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-----FEEGVKVFMATANGT 120 (307)
T ss_dssp EEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESC-----CCTTCEEEEEETTSE
T ss_pred EEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEecc-----CCCCcEEEEEeCCCe
Confidence 333444566899999999999998876544332 11 112223344544433221 123457888899999
Q ss_pred EEEEEEcCCCCCC-cceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeec
Q 003208 496 MTIVRVVGDVHTP-QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE 574 (839)
Q Consensus 496 i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 574 (839)
++--.+..-.... .....++.. . ...+..+..+ . +...++..+.+|.+..+....-...... .... ..
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~-~-~d~lv~~~~~-~-~~~~i~l~T~~G~~irf~~~~v~~~gr~----a~Gv---~~ 189 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLV-D-GDELIGVDLT-S-GEDEVMLFSAEGKVVRFKESSVRAMGCN----TTGV---RG 189 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCC-T-TCCEEEEEEE-C-TTCEEEEEETTSEEEEEEGGGSCBCCTT----CCCE---EC
T ss_pred EEEEEHHHhhccccCCeEEEEEC-C-CCEEEEEEEe-C-CCCEEEEECCCCcEEEEEHHHcCccCCC----CCCe---Ee
Confidence 9988775322211 111111111 1 2344443332 2 3344555667788877776643221110 0000 01
Q ss_pred cccccCceEEEEeeecCCCEEEEecCCccEEEEeccc
Q 003208 575 FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 575 ~~~~h~~~I~~l~~s~~~~~la~gs~dg~i~iw~~~~ 611 (839)
+...-...|.++....++..|++.+..|.++-.++..
T Consensus 190 i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 190 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 1112245577776655667788999999999888764
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=71.78 E-value=70 Score=35.91 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCcEEEEEeCC------CcEEEEecCCCceEEEEecCCceeEEEEeeccCCccceEEEEeecCC--eEEEEEee
Q 003208 146 GNRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN--EIIVWKVD 211 (839)
Q Consensus 146 ~~~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~~dg--~i~vw~~~ 211 (839)
++.+++.|+.+ +.+.+||..+.+-...-..+....-.++.. -.++.+++.|+.++ .+.+||+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~---~~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACS---LPDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEE---CTTSCEEEECCBCSSCSEEEEETT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEE---EcCCEEEEECCCCCCCCEEEEECC
Confidence 45566666643 357888887754322211111111111211 02566777776654 67888876
No 343
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.06 E-value=88 Score=30.83 Aligned_cols=218 Identities=11% Similarity=0.091 Sum_probs=110.5
Q ss_pred cCCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEecCCeEEEEe
Q 003208 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (839)
Q Consensus 358 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 437 (839)
++..++++.+.+|.|+--.+..-..+...+. .+..+. +...+..+..+.....+.+++.+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----------g~~~~~----------lke~D~l~~~~~~~~~~~ll~~T 65 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGK----------GLSSFD----------LNDGDEIVIALCVNTHDYLFMIS 65 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCC----------CEECCC----------CCTTCCEEEEEEEETTCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCC----------Cceecc----------cCCCCEEEEEEEECCCCEEEEEE
Confidence 4567889999999999887633111100000 000000 01111223333344566899999
Q ss_pred ccceEEEEEecCCCCceeEE-------EeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCCCCCC-c
Q 003208 438 NHGYLYHTKLCDMDSVNWNK-------ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-Q 509 (839)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~~~~~-~ 509 (839)
+.|.++.++..+.....|.. .+....+..+..+..... ......++..+..|.++.-.+..-.... .
T Consensus 66 ~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~ 140 (312)
T 1suu_A 66 NEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKD-----LTDDAYLLLTTASGKIARFESTDFKAVKSR 140 (312)
T ss_dssp TTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESC-----CCTTCEEEEEETTSEEEEEEGGGGCC----
T ss_pred CCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEecc-----CCCCCEEEEEeCCCeEEEEEHHHhhccCCC
Confidence 99999998887654433221 111222334444433221 1133567788889999888775422111 1
Q ss_pred ceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEEeeecCCCCcccccCCccceeeeeeccccccCceEEEEeee
Q 003208 510 LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (839)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 589 (839)
....+.. .....+..+..+ .+...++..+.+|.+..+..+.-...... ..-...+.+ .-...|..+...
T Consensus 141 G~~~i~L--~~~d~lv~~~~~--~~~~~i~l~T~~G~~~r~~~~ev~~~gR~-~~Gv~~i~L------~~~d~vv~~~~v 209 (312)
T 1suu_A 141 GVIVIKL--NDKDFVTSAEIV--FKDEKVICLSKKGSAFIFNSRDVRLTNRG-TQGVCGMKL------KEGDLFVKVLSV 209 (312)
T ss_dssp CEECBCC--CTTCCEEEEEEE--CTTCEEEEEETTSEEEEEEGGGSCBCCTT-BCCEECCCC------CTTCCEEEEEEC
T ss_pred cEEEEec--CCCCEEEEEEEe--CCCCEEEEEeCCCcEEEEEHHHccccCCC-CCCeEeEEe------CCCCEEEEEEEE
Confidence 1111111 123445554332 33445666778898888887653211110 000011111 124456666555
Q ss_pred cCCCEEEEecCCccEEEEeccc
Q 003208 590 FEDEVLFCGDLRGNLVLFPLLR 611 (839)
Q Consensus 590 ~~~~~la~gs~dg~i~iw~~~~ 611 (839)
.++..|++.+..|..+..+++.
T Consensus 210 ~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 210 KENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TTCSEEEEEETTSEEEEEEGGG
T ss_pred CCCCeEEEEECCCceEEEEHHH
Confidence 5567788889999999998875
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.01 E-value=1.2e+02 Score=35.46 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=26.5
Q ss_pred ceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCc
Q 003208 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 639 ~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
.|.++... ++..+|+|-++|+++|+|++.+++.
T Consensus 237 ~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeec---CCCcEEEEEECCCEEEEEECCCCCe
Confidence 45555555 6778999999999999999998754
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=66.41 E-value=1.1e+02 Score=30.62 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=42.9
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEc-CcEEEEEEeeccCCCCCCCCCccccceeeeEec----cCCCcceEEEEEe
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL----PRLSHWVFDVCFL 141 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~I~~~~~~ 141 (839)
...+|+|. ||| .++++-. .+.|++++..... ...+..+ ..-....+.|+++
T Consensus 33 ~P~~ia~~-------pdG----~llVter~~G~I~~v~~~~g~-------------~~~v~~~~~v~~~g~~GllGia~~ 88 (347)
T 3das_A 33 SPWGLAPL-------PGG----DLLVSSRDEATITRVDAKTGR-------------KTELGEVPGVSPSGEGGLLGIALS 88 (347)
T ss_dssp SEEEEEEC-------TTS----CEEEEETTTCEEEEECTTTCC-------------EEEEEECTTCCCBTTBSEEEEEEC
T ss_pred CceEEEEc-------CCC----cEEEEEecCCEEEEEECCCCc-------------EeeecccCceeecCCCCceeeEec
Confidence 47889999 898 6677766 7888888643221 1222222 1234568999999
Q ss_pred eccCC---CcEEEEE---eCCCcEEEEecCC
Q 003208 142 KVCNG---NRSLAIG---CSDNSIRVWDISN 166 (839)
Q Consensus 142 ~~~~~---~~~las~---~~d~~i~vwd~~~ 166 (839)
| + +..|... ..++.|.-|....
T Consensus 89 P---df~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 89 P---DYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp T---THHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred c---ccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 8 5 3334332 2345555555543
No 346
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=65.55 E-value=1.2e+02 Score=30.54 Aligned_cols=59 Identities=17% Similarity=0.046 Sum_probs=34.9
Q ss_pred cccceEEeEEC---------CCEEEEEeCCCeEEEEcC-CCceEEE--e-ecccCCceEEEEEccCCCEEEEE
Q 003208 307 HNARVWDCCLT---------DSFIITAGEDCTCRVWGS-DGKQLKM--I-KEHIGRGIWRCLYDSLSSLLVTA 366 (839)
Q Consensus 307 h~~~v~~~~~~---------~~~l~s~~~dg~i~vw~~-~~~~~~~--~-~~h~~~~i~~~~~~~~~~~l~t~ 366 (839)
+...+..+.|. +.++++.-..+.|...++ .++.... + ..... .+..+++.|||.+.++.
T Consensus 269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ-RIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC-CEEEEEECTTSCEEEEE
T ss_pred CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC-ceeEEEECCCCcEEEEE
Confidence 33456667663 455666556677777776 4433322 2 12223 48899999999866543
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=65.54 E-value=1e+02 Score=29.82 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC-
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS- 335 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~- 335 (839)
..|..++..... .+.-. |+.|..|-.....+. . ....-...|..++......+.- .||.|..|-.
T Consensus 141 ~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql-----g-----~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n 206 (282)
T 3qhy_B 141 SGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT-----T-----VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDN 206 (282)
T ss_dssp SSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT-----S-----CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECC
T ss_pred CCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC-----C-----CceecCCCeEEEEecCCEEEEE-ECCeEEEEECC
Confidence 346666654332 22233 788998877654331 0 0011134577777665544444 6999999976
Q ss_pred -CCceEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 336 -DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 336 -~~~~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.++.-.... ... .|..++.......+++ ||.|..|-..
T Consensus 207 ~~gqlg~p~~-~~~-~v~~i~~G~~h~~al~---~g~v~~wG~n 245 (282)
T 3qhy_B 207 RYKQTTVPTE-ALS-GVSAIASGEWYSLALK---NGKVIAWGSS 245 (282)
T ss_dssp TTSTTCCCGG-GGS-SCCEEEECSSCEEEEE---TTEEEEESTT
T ss_pred CCCCCCCCcc-cCC-CceEEEcCCCEEEEEE---CCEEEEecCC
Confidence 232211111 112 4667776554333333 8999999653
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=63.87 E-value=1.5e+02 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=17.0
Q ss_pred EeecCCCe-EEEEeCCCCcEEEeeec
Q 003208 529 WCKSLGHR-FIFTADPKGRLKLWQLC 553 (839)
Q Consensus 529 ~~~s~~~~-~l~s~~~dg~i~~wd~~ 553 (839)
+++.|++. .|+++...|.|++++.+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTT
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCC
Confidence 45778885 34445577999998754
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=62.36 E-value=1.5e+02 Score=33.14 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCC--cEEEEEcccCcc
Q 003208 266 SCGSKLVSVSDDR--SARIWEVRAEYW 290 (839)
Q Consensus 266 ~~~~~l~s~s~d~--~i~iwd~~~~~~ 290 (839)
.+++.++.|+.++ .+.+||..+..-
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCce
Confidence 3677778877654 688999887543
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=61.78 E-value=1.6e+02 Score=30.84 Aligned_cols=108 Identities=8% Similarity=0.053 Sum_probs=58.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeece--Eee--ccccceEEeEEC-----CCEEEEEeC
Q 003208 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS--VLY--GHNARVWDCCLT-----DSFIITAGE 326 (839)
Q Consensus 256 ~~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~--~h~~~v~~~~~~-----~~~l~s~~~ 326 (839)
-....+|+|.|+|+.+++-...+.|++++..++.. ..+... .+. .-......|+|+ +..|+....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE------eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 45678999999998666654434688887654322 111100 000 124567789998 345544432
Q ss_pred -------------CCeEEEEcC-CC--c-----eEE-EeecccCCceEEEEEccCCCEEEEEeCC
Q 003208 327 -------------DCTCRVWGS-DG--K-----QLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (839)
Q Consensus 327 -------------dg~i~vw~~-~~--~-----~~~-~~~~h~~~~i~~~~~~~~~~~l~t~~~d 369 (839)
...|.-++. .+ + .+. .+..........|+|.|||.+.++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 234555554 21 1 111 1221111135789999999877776643
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=61.78 E-value=19 Score=36.05 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=64.9
Q ss_pred eEEEee-CCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEE--EcCcEEEEEEeeccCCCCCC
Q 003208 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNSQ 113 (839)
Q Consensus 37 ~l~~g~-~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~--~~~~~i~iw~~~~~~~~~~~ 113 (839)
+++.++ ||.|.-.|.++|+++.+++.....++....-. . ...++ ..+++ ..||.|..++...+.
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~-~---~~~~~----~~~vv~p~~dG~l~a~~~~~G~----- 78 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEP-S---RLETY----ETLIIEPFGDGNIYYFNAHQGL----- 78 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCS-C---TTTSS----EEEEECCSTTTEEEEEETTTEE-----
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCC-c---cccCC----cEEEEEECCCCEEEEEECCCCc-----
Confidence 455545 99999999999999999886411122221100 0 00122 34434 467888777765321
Q ss_pred CCCccccceeeeEeccC--CCcceEEEEEeecc------CCCcEEEEEeCCCcEEEEecCCCceEEEEecC
Q 003208 114 YQPETCVNLSLVQSLPR--LSHWVFDVCFLKVC------NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~--h~~~I~~~~~~~~~------~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~ 176 (839)
.+....... ...++.. .=.|.- ..+..+++|+.++.+...|+.+|+.+.++...
T Consensus 79 --------~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 79 --------QKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp --------EEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred --------EEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111111110 1112221 000100 04557888999999999999999998887643
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=56.92 E-value=1.1e+02 Score=32.73 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=64.4
Q ss_pred eEEeEEecccccccCCCccceeeEEEEEc--CcEEEEEEeeccCC--CCCCCCCccccceeeeEeccCCCcceEEEEEee
Q 003208 67 RLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELS--PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (839)
Q Consensus 67 ~v~~i~~~~~~~~~~~~~~~~~~~l~~~~--~~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (839)
..|++.++ ||| .++.+++ +.++.|++++.-.. ......|.. ........ .-.-+-.+|.+
T Consensus 324 sPHGv~vs-------PDG----kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~----~~~ae~e~-GlGPlHt~Fd~ 387 (638)
T 3sbq_A 324 NPHGCNTS-------SDG----KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRD----VIVGEPEL-GLGPLHTTFDG 387 (638)
T ss_dssp SCCCEEEC-------TTS----CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGG----GEEECCBC-CSCEEEEEECS
T ss_pred CCcceeeC-------CCC----CEEEEcCCCCCeEEEEEeehhhhhhhccccCccc----ceEeeccC-CCcccEEEECC
Confidence 47888888 999 5666665 68999999874210 000111111 11222221 22346678888
Q ss_pred ccCCCcEEEEEeCCCcEEEEecCCC----------ceEEEEecCCcee-EEEEeeccCCccceEEEEeec
Q 003208 143 VCNGNRSLAIGCSDNSIRVWDISNS----------SIILEVHSPERCL-LYSMKLWGDNLEALRIASGTI 201 (839)
Q Consensus 143 ~~~~~~~las~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~-~~s~~~~~~~~~~~~l~sg~~ 201 (839)
+|....|--.|..|..|++... ..+.++..+-... .....--...++|++|++...
T Consensus 388 ---~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 388 ---RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp ---SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred ---CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 8855555567999999999653 3344443322111 111111123578888888754
No 353
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=53.24 E-value=2e+02 Score=29.26 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCC-CceeeeceEeec-cccceEEeEECCCEEEEEeCCCeEEEEc
Q 003208 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-SIEEVGSSVLYG-HNARVWDCCLTDSFIITAGEDCTCRVWG 334 (839)
Q Consensus 257 ~~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vw~ 334 (839)
..|..++......+.+....|+.|..|-.....+.... ......|..+.. ....|..++......+.-..||.|..|-
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 35667766543456677778999999976543332100 000011111211 1224666666667777778999999997
Q ss_pred CC--Cc----------eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 335 SD--GK----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 335 ~~--~~----------~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
.. ++ ....+.......|..++... ...+....||.|..|-..
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 62 11 11222222222466665533 345556789999999763
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=46.78 E-value=1.3e+02 Score=32.20 Aligned_cols=69 Identities=6% Similarity=-0.005 Sum_probs=44.4
Q ss_pred eEEEEEeeccCCCcEEEEEe-CCCcEEEEecCCCce-------------EEEEecCCceeEEEEeeccCCccceEEEEee
Q 003208 135 VFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSI-------------ILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (839)
Q Consensus 135 I~~~~~~~~~~~~~~las~~-~d~~i~vwd~~~~~~-------------~~~~~~~~~~~~~s~~~~~~~~~~~~l~sg~ 200 (839)
...+.++| +|++++.++ .+.++.|+|+++... ....+...+. +...| +++|....+--
T Consensus 325 PHGv~vsP---DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP--lHt~F---d~~G~aYTtlf 396 (638)
T 3sbq_A 325 PHGCNTSS---DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP--LHTTF---DGRGNAYTTLF 396 (638)
T ss_dssp CCCEEECT---TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE--EEEEE---CSSSEEEEEET
T ss_pred CcceeeCC---CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc--cEEEE---CCCCceEeeee
Confidence 34567777 999887655 488999999974211 2222222222 23333 57786666667
Q ss_pred cCCeEEEEEee
Q 003208 201 IYNEIIVWKVD 211 (839)
Q Consensus 201 ~dg~i~vw~~~ 211 (839)
.|.+|.-|++.
T Consensus 397 idSqvvkWni~ 407 (638)
T 3sbq_A 397 IDSQVVKWNME 407 (638)
T ss_dssp TTTEEEEEEHH
T ss_pred ecceEEEEecc
Confidence 89999999997
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=43.76 E-value=2.3e+02 Score=27.23 Aligned_cols=221 Identities=12% Similarity=0.069 Sum_probs=109.4
Q ss_pred eeeeEEEEecCCCCCCCcceEEEeeCCeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCccceeeEEEEEcCc
Q 003208 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (839)
Q Consensus 18 ~~Vt~l~f~~~~~~~~~~~~l~~g~~~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (839)
..|..|+.. .. ..+++ . ++.|..|-....-.+.. ......+|..|+.. .+ ..++.. ++
T Consensus 24 ~~i~~ia~G--~~----h~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G-------~~-----hs~~l~-~G 81 (282)
T 3qhy_B 24 SGVDAIAGG--YF----HGLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAG-------NY-----HSLALK-DG 81 (282)
T ss_dssp SSCCEEEEC--SS----EEEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEEC-------SS-----EEEEEE-TT
T ss_pred CCCcEEEeC--CC----eEEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeC-------CC-----EEEEEE-CC
Confidence 357888876 33 33333 4 99999998654322221 11112246677665 33 445554 89
Q ss_pred EEEEEEeeccCCCCCCCCCccccceeeeEeccCCCcceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEecCC
Q 003208 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (839)
Q Consensus 98 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~~~~ 177 (839)
.|..|-.......+ .+. .-...|..++... ...++. . ||.|..|-....-.+. +....
T Consensus 82 ~v~~wG~n~~Gqlg-----------~P~----~~~~~v~~ia~G~----~hs~al-~-~G~v~~wG~n~~gqlg-~~~~~ 139 (282)
T 3qhy_B 82 EVIAWGGNEDGQTT-----------VPA----EARSGVDAIAAGA----WASYAL-K-DGKVIAWGDDSDGQTT-VPAEA 139 (282)
T ss_dssp EEEEEECCTTSTTC-----------CCG----GGSSSEEEEEEET----TEEEEE-E-TTEEEEEECCTTSTTS-CCGGG
T ss_pred EEEEeeCCCCCCCC-----------CCc----ccCCCeEEEECcC----CEEEEE-e-CCeEEEecCCCCCcCC-CCccC
Confidence 99988765322100 000 0123577777643 233333 4 8999999765421110 00011
Q ss_pred ceeEEEEeeccCCccceEEEEeecCCeEEEEEeeccccccCCCCCCCccCCCCCCCceeeEeecccccceeeEEEecCCC
Q 003208 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (839)
Q Consensus 178 ~~~~~s~~~~~~~~~~~~l~sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (839)
...+..+.. .....++. + ||.|+.|-........ .... -..
T Consensus 140 ~~~i~~i~~----G~~~~~~l-~-~G~v~~wG~n~~gqlg---------------------------~p~~------~~~ 180 (282)
T 3qhy_B 140 QSGVTALDG----GVYTALAV-K-NGGVIAWGDNYFGQTT---------------------------VPAE------AQS 180 (282)
T ss_dssp GSSEEEEEE----CSSEEEEE-E-TTEEEEEECCTTSTTS---------------------------CCGG------GGS
T ss_pred CCCeEEEEc----ccCEEEEE-E-CCEEEEecCCCCCCCC---------------------------Ccee------cCC
Confidence 111222221 12222332 3 7999988765211111 0000 124
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEECCCEEEEEeCCCeEEEEcC
Q 003208 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (839)
Q Consensus 258 ~V~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw~~ 335 (839)
.|..|+.-... .++. .||.|..|=.....+. . + . ......|..++......+.-. ||.+..|-.
T Consensus 181 ~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql-----g-~---p-~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~ 244 (282)
T 3qhy_B 181 GVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT-----T-V---P-TEALSGVSAIASGEWYSLALK-NGKVIAWGS 244 (282)
T ss_dssp SEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT-----C-C---C-GGGGSSCCEEEECSSCEEEEE-TTEEEEEST
T ss_pred CeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC-----C-C---C-cccCCCceEEEcCCCEEEEEE-CCEEEEecC
Confidence 56677664432 2333 5899999976654331 0 0 0 011234666665544333344 999999987
No 356
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=41.16 E-value=3.3e+02 Score=28.36 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=21.2
Q ss_pred ceEEEEEecCCeEEEEeccc-eEEEEE
Q 003208 421 YVRCLHLTSEDTLYIATNHG-YLYHTK 446 (839)
Q Consensus 421 ~v~~~~~~~~~~~~~~~~~g-~i~~~~ 446 (839)
....++|.|++.++++...| .|++++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~ 54 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVN 54 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEEC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEE
Confidence 46899999999999998876 577654
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=40.24 E-value=2.7e+02 Score=27.18 Aligned_cols=207 Identities=8% Similarity=0.043 Sum_probs=104.0
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCccCCCCCceeeeceEeeccccceEEeEE-C-CCEEEEEeCCCeEEEEcC-C------
Q 003208 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-T-DSFIITAGEDCTCRVWGS-D------ 336 (839)
Q Consensus 266 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~l~s~~~dg~i~vw~~-~------ 336 (839)
++...+++.+.+|.|+--.+......... .+-.....+... ..+..+.. + ...++..+..|.++-... +
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~-~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG-GKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS-CCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC-CCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 45667889999999998877654321000 000000112222 22333222 2 567778888888766654 1
Q ss_pred ---CceEE-EeecccCCceEEEEEcc---CCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCc
Q 003208 337 ---GKQLK-MIKEHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (839)
Q Consensus 337 ---~~~~~-~~~~h~~~~i~~~~~~~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (839)
|.++. .+....+..|.++...+ +...++..+..|.++...+..-....-.+ +..+..
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G------------~~~i~L---- 147 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG------------VIVIKL---- 147 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C------------EECBCC----
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc------------EEEEec----
Confidence 11100 11111222355554332 45678888999999988874311110000 111111
Q ss_pred cceeeccCCCcceEEEEEecCCeEEEEeccceEEEEEecCCCC----ceeEEEeeecCCCceEEeeecCCCCCCCCCCCc
Q 003208 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDS----VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (839)
Q Consensus 410 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 485 (839)
......+......++..+++.+.+|+.+++.+.+... ..-........+..+..+.... ...
T Consensus 148 ------~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~--------~~~ 213 (312)
T 1suu_A 148 ------NDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK--------ENP 213 (312)
T ss_dssp ------CTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT--------TCS
T ss_pred ------CCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC--------CCC
Confidence 1111223333344566899999999999887765311 1112233333344455544322 224
Q ss_pred EEEEeCCCccEEEEEEcCC
Q 003208 486 WVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 486 ~l~~g~~dg~i~l~~~~~~ 504 (839)
.+++.+..|......++.-
T Consensus 214 ~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 214 YLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEEETTSEEEEEEGGGS
T ss_pred eEEEEECCCceEEEEHHHh
Confidence 5667777888888887553
No 358
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=39.28 E-value=3.2e+02 Score=27.65 Aligned_cols=110 Identities=6% Similarity=-0.077 Sum_probs=53.5
Q ss_pred CEEEEEeCCCcEEEEEcccCccCCCCC-ceeeeceEeec-cccceEEeEECCCEEEEEeCCCeEEEEcCC--Cc------
Q 003208 269 SKLVSVSDDRSARIWEVRAEYWKDSDS-IEEVGSSVLYG-HNARVWDCCLTDSFIITAGEDCTCRVWGSD--GK------ 338 (839)
Q Consensus 269 ~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vw~~~--~~------ 338 (839)
+.++.-..||+|..|=.....++.... .....+..... ....|..++......+.-..||.|..|-.. ++
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~ 90 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT 90 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc
Confidence 455666677888888665433321100 01000101111 112455565556777778889999999651 11
Q ss_pred ----eEEEeecccCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003208 339 ----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (839)
Q Consensus 339 ----~~~~~~~h~~~~i~~~~~~~~~~~l~t~~~dg~i~iw~~~ 378 (839)
....+.......+..++++......+.-..||.|..|-..
T Consensus 91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 1112222222235556666666677777889999999763
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.96 E-value=1.6e+02 Score=34.37 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=32.3
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
..|.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~---~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLS---TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEET---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecC---CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3567777776 78899999999999999999998887653
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.44 E-value=1.4e+02 Score=35.95 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=26.2
Q ss_pred ceeEEEEEeccCCceEEEeecCcCcEEEEEEecCCc
Q 003208 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (839)
Q Consensus 639 ~Vt~i~~~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 674 (839)
.+.+++.. .+..+|+|-++|+++|+|++.+++.
T Consensus 239 ~~vs~~~~---~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 239 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp CBSCCEEE---TTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eeEEeecc---CCccEEEEEeCCCEEEEEECCCCCe
Confidence 44555555 6778999999999999999988754
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=31.98 E-value=4.1e+02 Score=26.74 Aligned_cols=65 Identities=9% Similarity=-0.077 Sum_probs=35.8
Q ss_pred ceEEeEEC----CCEEEEEeCCCeEEEEcCCCceEEEeec------------------ccCCceEEEEEccC-CCEEEEE
Q 003208 310 RVWDCCLT----DSFIITAGEDCTCRVWGSDGKQLKMIKE------------------HIGRGIWRCLYDSL-SSLLVTA 366 (839)
Q Consensus 310 ~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~------------------h~~~~i~~~~~~~~-~~~l~t~ 366 (839)
.|.++++. ++.+..++..+.|...+-.|+.-..+.. .....+.+|.++|. ...|+.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 57788885 5667777767766666544433222211 01124788999873 3444555
Q ss_pred eCCCcEEE
Q 003208 367 GFDSAIKV 374 (839)
Q Consensus 367 ~~dg~i~i 374 (839)
..++.|..
T Consensus 196 ~~~ggl~~ 203 (394)
T 3b7f_A 196 MSSGGVFE 203 (394)
T ss_dssp EETBEEEE
T ss_pred ECCCCEEE
Confidence 44444433
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=22.82 E-value=6.6e+02 Score=26.12 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCCCCc--ceEEEeeCCeeEEEECC
Q 003208 20 ISALCFVHLPSHLSSL--PFLLAGSGSQVLLYDLE 52 (839)
Q Consensus 20 Vt~l~f~~~~~~~~~~--~~l~~g~~~~v~iwd~~ 52 (839)
-.+|+|. || + +++++-..|.|++++..
T Consensus 16 P~~~a~~--pd----G~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 16 PVGALHS--GD----GSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EEEEECC--SS----SSCCEEEEETTTEEEEECTT
T ss_pred ceEEEEC--CC----CCeEEEEEeCCceEEEEeCC
Confidence 3589999 99 5 58887778999999754
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=22.42 E-value=5.1e+02 Score=24.65 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=87.6
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCcCccCcCCCCcccccCCCcceEEeecCCCccceeeccCCCcceEEEEEe
Q 003208 350 GIWRCLYDS-LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (839)
Q Consensus 350 ~i~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 428 (839)
.|..+.... +..+++..+.+|.++-..+..-. +.-.+ +..+... ..+..+......
T Consensus 69 ~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G------------~~~i~lk----------egD~l~~~~~~~ 125 (276)
T 3no0_A 69 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQG------------MPIIKLT----------EGDEVVSIASSV 125 (276)
T ss_dssp CEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTT------------EECSCCC----------TTCCEEEEEECC
T ss_pred EEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCC------------eEEEecC----------CCCEEEEEEEeC
Confidence 466654421 46789999999999998874321 11000 0001100 111122222333
Q ss_pred cCCeEEEEeccceEEEEEecCCCCc----eeEEEeeecCCCceEEeeecCCCCCCCCCCCcEEEEeCCCccEEEEEEcCC
Q 003208 429 SEDTLYIATNHGYLYHTKLCDMDSV----NWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (839)
Q Consensus 429 ~~~~~~~~~~~g~i~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~l~~~~~~ 504 (839)
.++.+++.+++|+++.++..+.... +-.+......+..+..+.... +...+++.+..|.++...++.-
T Consensus 126 ~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~--------~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 126 DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN--------GEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES--------SCSEEEEEETTSCEEEEEGGGS
T ss_pred CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC--------CCCEEEEEeCCCcEEEeEHHHc
Confidence 4558999999999998877654321 111222233334444443322 2357778888999888887653
Q ss_pred CCCCcceeeeEeeccceeEEeeEEEeecCCCeEEEEeCCCCcEEE--eeecC
Q 003208 505 VHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKL--WQLCD 554 (839)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~~--wd~~~ 554 (839)
....+........ .....+..+.. . .+...++..+.+|.+.. ++.+.
T Consensus 198 ~~~~R~gkGv~~i-~~~~~lv~~~~-~-~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 198 PKTNRGVKGTEVS-GTKDTLVDLIP-I-KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CCCCTTCCCEECC-CSSSCEEEEEE-E-SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred ccCCCCCcceEEE-cCCCcEEEEEE-e-CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 3322211111111 22333444322 2 23345555667787777 77654
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=20.79 E-value=2.3e+02 Score=33.94 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=30.9
Q ss_pred ceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 134 ~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
.|.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~---~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS---TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET---TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC---CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 445556666 77899999999999999999999887754
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.51 E-value=2.4e+02 Score=30.58 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=38.6
Q ss_pred eEEEEecCCCCCCCcceEEEeeC-------------CeeEEEECCCCeeeeEEeeecCceEEeEEecccccccCCCcc
Q 003208 21 SALCFVHLPSHLSSLPFLLAGSG-------------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVST 85 (839)
Q Consensus 21 t~l~f~~~~~~~~~~~~l~~g~~-------------~~v~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 85 (839)
--|+|+ |. ++|+++-.+ ..+.+.+..+|++.+-+....+..+++++|+ ||++
T Consensus 479 DNL~fd--~~----G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs-------pDg~ 543 (592)
T 3zwu_A 479 DGLGFD--KA----GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS-------PDQK 543 (592)
T ss_dssp EEEEEC--TT----CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC-------TTSS
T ss_pred cceEEC--CC----CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC-------CCCC
Confidence 457888 87 776666432 2467778788888777777777789999999 8874
No 366
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=20.43 E-value=6.4e+02 Score=25.02 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.9
Q ss_pred cceEEEEEeeccCCCcEEEEEeCCCcEEEEecCCCce
Q 003208 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (839)
Q Consensus 133 ~~I~~~~~~~~~~~~~~las~~~d~~i~vwd~~~~~~ 169 (839)
..-..|+|.| ++.++++--..|.|++++..+++.
T Consensus 32 ~~P~~ia~~p---dG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 32 NSPWGLAPLP---GGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp SSEEEEEECT---TSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcC---CCcEEEEEecCCEEEEEECCCCcE
Confidence 4468999999 998777655489999998765554
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.05 E-value=1.4e+02 Score=33.14 Aligned_cols=29 Identities=17% Similarity=0.492 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceEEEEe
Q 003208 146 GNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (839)
Q Consensus 146 ~~~~las~~~d~~i~vwd~~~~~~~~~~~ 174 (839)
+..+|++-+.|.++|+||+.+++++....
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 56789999999999999999998876654
Done!