BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003209
(839 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 582 bits (1500), Expect = e-166, Method: Compositional matrix adjust.
Identities = 321/782 (41%), Positives = 440/782 (56%), Gaps = 46/782 (5%)
Query: 38 LKVTFGGPAKHWTDAIPIGNGRLGAMVWGGVASEILQLNEDTLWTGTPGDYTDRKAPEAL 97
LK+ F PA WT+A+PIGNG LGA V+G V E + LNEDTLW+G P D+ + KA E L
Sbjct: 3 LKIQFDFPASFWTEALPIGNGNLGAXVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVL 62
Query: 98 EEVRKLVDNGKYFAATEAAVKLSGNPSDVYQPLGDIKLEFDDSHLNYTVPSYRRELDLDT 157
+VR+L+ KY A + + G + Y P GD+ + D H P Y RELDL T
Sbjct: 63 PKVRELIAQEKYEEADQLSRDXXGPYTQSYLPFGDLNIFXD--HGQVVAPHYHRELDLST 120
Query: 158 ATAKISYSVGDVEFTREHFASNPNQXXXXXXXXXXXXXXXXXXXXDSKLHHHSQVNSTNQ 217
++Y++G V++TRE F + P++ DS L H S V + +
Sbjct: 121 GIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSVGAEHY 180
Query: 218 IIMQGSCPDKRPSPKVMVNDNP---------KGVQFTAILDLQISESRGSIQTLDDKKLK 268
I G+ P+ SP +NP +G F L + + G +D L
Sbjct: 181 TI-SGTAPE-HVSPSYYDEENPVRYGHPDXSQGXTFHGRL---AAVNEGGSLKVDADGLH 235
Query: 269 VEGCDWAVLLLVASSSFDGPFTKPSDSEKDPXXXXXXXXXXXXXXXXXDLYARHLDDYQS 328
V G A L AS+SFD P T S E+DP ++ RHL+DY
Sbjct: 236 VXGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTK 294
Query: 329 LFHRVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELL 388
LF+RVSL L +S I +D ST +R+K + + D LVELL
Sbjct: 295 LFNRVSLHLGES------------------IAPAD---XSTDQRIKEYGS-RDLGLVELL 332
Query: 389 FQFGRYLLISCSRPGTQVANLQGIWNKDIEPPWDAAQHLNINLQMNYWPSLPCNLRECQE 448
FQ+GRYL I+ SRPGTQ ANLQGIWN++ PW + LNIN + NYWP+ CNL E +
Sbjct: 333 FQYGRYLXIASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEXNYWPAETCNLAELHK 392
Query: 449 PLFDYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSP----DRGQAVWAMWPMGGAW 504
PL ++ L+ NG KTA++NY A G+V H +DLW +T+P G VWA WP GG W
Sbjct: 393 PLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPXGGVW 452
Query: 505 VCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSPEHMFVAP 564
+ HLWEHYT+ D+ +L++ AYP+ + LF LDWLIE GYL T+PSTSPE F
Sbjct: 453 LTQHLWEHYTFGEDEAYLRDTAYPIXKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIG 512
Query: 565 DGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLLPTRIARDGS 624
+ K +VS ++T D+S+I E F + AA+ L +ED +K + +A+ RLLP +I + G
Sbjct: 513 E-KGYAVSSATTXDLSLIAECFDNCIQAAKRLSIDED-FVKALSDAKQRLLPLQIGKRGQ 570
Query: 625 IMEWAQDFQDPDIHHRHLSHLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEGPGWSTTW 684
+ EW+ DF+D D+HHRH+SHL G+YPG IT P+L +AA+ +L RG+EG GWS W
Sbjct: 571 LQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNLFEAAKTSLEIRGDEGTGWSLGW 630
Query: 685 KIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAAV 744
KI+LWA ++ R++ + L+ D + GG+Y+NLF AHPPFQID NF +A +
Sbjct: 631 KISLWARFKDGNRCERLLSNXLTLIKEDESXQHRGGVYANLFGAHPPFQIDGNFSATAGI 690
Query: 745 AEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVGLWSKEQNS 804
AE L+QS L LPALP D W G VKGL+ RG V++ W G L +V + S + +
Sbjct: 691 AEXLLQSHQGYLEFLPALP-DSWKDGYVKGLRGRGGYEVDLAWTNGALVKVEIVSTKTQT 749
Query: 805 VK 806
+
Sbjct: 750 CE 751
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 239/856 (27%), Positives = 375/856 (43%), Gaps = 159/856 (18%)
Query: 53 IPIGNGRLGAMVWGGVASEILQLNEDTLWTGTPGDYTDRKAPE---------ALEEVRKL 103
+P GNG++G VWG V+ E + NE+TLWTG PG T L + K
Sbjct: 52 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 111
Query: 104 VDNGKYFAATEAAVKLSGNPSDV----YQPLGDIKLE--FDDSHLNYTVPSYRRELDLDT 157
+ NG A T L+G + Y GDI L+ F+D+ TV YRR+L+L
Sbjct: 112 LANG---AETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDT----TVTEYRRDLNLSK 164
Query: 158 ATAKISYSVGDVEFTREHFASNPNQXXXXXXXXXXXXXXXXXXXXDSKLHHH-SQVNSTN 216
A +++ V +TRE+FASNP+ KL+ + S +TN
Sbjct: 165 GKADVTFKHDGVTYTREYFASNPDNVMVARLTASKA----------GKLNFNVSMPTNTN 214
Query: 217 QIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRGSI-QTLDDKKLKVEGCDWA 275
+ K + V G+ + + + + + G++ + D LKV
Sbjct: 215 YSKTGETTTVKGDTLTVKGALGNNGLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAV 274
Query: 276 VLLLVASSSFDG--PFTKPSDSEKDPXXXXXXXXXXXXXXXXXDLYARHLDDYQSLFHRV 333
L + A++ + P + ++ + + H+DD+ +++ RV
Sbjct: 275 TLYIAAATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRV 334
Query: 334 SLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQFGR 393
+ L +S ++ DG++ D + +K G+ +TA++ + L L++++GR
Sbjct: 335 KIDLGQSGHSS--DGAVATD---ALLKAYQRGSATTAQKRE---------LETLVYKYGR 380
Query: 394 YLLISCSRPGTQV-ANLQGIW------NKDIEPPWDAAQHLNINLQMNYWPSLPCNLREC 446
YL I SR +Q+ +NLQGIW N PW + H+N+NLQMNYWP+ N+ E
Sbjct: 381 YLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGEL 440
Query: 447 QEPLFDYLSSLSVNGSKTAKVNY-------------EASGYVVHQISDLWAKTSPDRGQA 493
EPL +Y+ L G TAKV E GY+ H + + T+P GQ+
Sbjct: 441 AEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAP--GQS 498
Query: 494 V-WAMWPMGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGG----Y 548
W P W+ +++E Y Y+ D L ++ Y LL+ + F +++++ G
Sbjct: 499 FSWGWSPAAVPWILQNVYEAYEYSGDPALL-DRVYALLKEESHFYVNYMLHKAGSSSGDR 557
Query: 549 LETNPSTSPEHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVL 608
L T + SPE + DG +T + S++ ++ ++ + AA+ G + D L+
Sbjct: 558 LTTGVAYSPEQGPLGTDG--------NTYESSLVWQMLNDAIEAAKAKG-DPDGLVGNTT 608
Query: 609 E-------------------------AQPRLLPTRIARDGSIMEW--------------A 629
+ A+ L P + G I EW
Sbjct: 609 DCSADNWAKNDSGNFTDANANRSWSCAKSLLKPIEVGDSGQIKEWYFEGALGKKKDGSTI 668
Query: 630 QDFQDPDIHHRHLSHLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEG------PGWSTT 683
+Q D HRH+SHL GL+PG IT+D + + AA+ +L R +G GW+
Sbjct: 669 SGYQ-ADNQHRHMSHLLGLFPGDLITIDNS-EYMDAAKTSLRYRCFKGNVLQSNTGWAIG 726
Query: 684 WKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAA 743
+I WA + Y++V E + + +Y+NLF H PFQID NFG ++
Sbjct: 727 QRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFDYHAPFQIDGNFGNTSG 775
Query: 744 VAEMLVQST-----------VKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDL 792
V EML+QS V +LPALP D W G V GL ARG TV WK G
Sbjct: 776 VDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKA 834
Query: 793 HEVGLWSK--EQNSVK 806
EV L S +Q +VK
Sbjct: 835 TEVRLTSNKGKQAAVK 850
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 238/856 (27%), Positives = 374/856 (43%), Gaps = 159/856 (18%)
Query: 53 IPIGNGRLGAMVWGGVASEILQLNEDTLWTGTPGDYTDRKAPE---------ALEEVRKL 103
+P GNG++G VWG V+ E + NE+TLWTG PG T L + K
Sbjct: 52 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 111
Query: 104 VDNGKYFAATEAAVKLSGNPSDV----YQPLGDIKLE--FDDSHLNYTVPSYRRELDLDT 157
+ NG A T L+G + Y GDI L+ F+D+ TV YRR+L+L
Sbjct: 112 LANG---AETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDT----TVTEYRRDLNLSK 164
Query: 158 ATAKISYSVGDVEFTREHFASNPNQXXXXXXXXXXXXXXXXXXXXDSKLHHH-SQVNSTN 216
A +++ V +TRE+FASNP+ KL+ + S +TN
Sbjct: 165 GKADVTFKHDGVTYTREYFASNPDNVMVARLTASKA----------GKLNFNVSMPTNTN 214
Query: 217 QIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRGSI-QTLDDKKLKVEGCDWA 275
+ K + V G+ + + + + + G++ + D LKV
Sbjct: 215 YSKTGETTTVKGDTLTVKGALGNNGLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAV 274
Query: 276 VLLLVASSSFDG--PFTKPSDSEKDPXXXXXXXXXXXXXXXXXDLYARHLDDYQSLFHRV 333
L + A++ + P + ++ + + H+DD+ +++ RV
Sbjct: 275 TLYIAAATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRV 334
Query: 334 SLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQFGR 393
+ L +S ++ DG++ D + +K G+ +TA++ + L L++++GR
Sbjct: 335 KIDLGQSGHSS--DGAVATD---ALLKAYQRGSATTAQKRE---------LETLVYKYGR 380
Query: 394 YLLISCSRPGTQV-ANLQGIW------NKDIEPPWDAAQHLNINLQMNYWPSLPCNLREC 446
YL I SR +Q+ +NLQGIW N PW + H+N+NLQMNYWP+ N+ E
Sbjct: 381 YLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGEL 440
Query: 447 QEPLFDYLSSLSVNGSKTAKVNY-------------EASGYVVHQISDLWAKTSPDRGQA 493
EPL +Y+ L G TAKV E GY+ H + + T+P GQ+
Sbjct: 441 AEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAP--GQS 498
Query: 494 V-WAMWPMGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGG----Y 548
W P W+ +++E Y Y+ D L ++ Y LL+ + F +++++ G
Sbjct: 499 FSWGWSPAAVPWILQNVYEAYEYSGDPALL-DRVYALLKEESHFYVNYMLHKAGSSSGDR 557
Query: 549 LETNPSTSPEHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVL 608
L T + SP + DG +T + S++ ++ ++ + AA+ G + D L+
Sbjct: 558 LTTGVAYSPAQGPLGTDG--------NTYESSLVWQMLNDAIEAAKAKG-DPDGLVGNTT 608
Query: 609 E-------------------------AQPRLLPTRIARDGSIMEW--------------A 629
+ A+ L P + G I EW
Sbjct: 609 DCSADNWAKNDSGNFTDANANRSWSCAKSLLKPIEVGDSGQIKEWYFEGALGKKKDGSTI 668
Query: 630 QDFQDPDIHHRHLSHLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEG------PGWSTT 683
+Q D HRH+SHL GL+PG IT+D + + AA+ +L R +G GW+
Sbjct: 669 SGYQ-ADNQHRHMSHLLGLFPGDLITIDNS-EYMDAAKTSLRYRCFKGNVLQSNTGWAIG 726
Query: 684 WKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAA 743
+I WA + Y++V E + + +Y+NLF H PFQID NFG ++
Sbjct: 727 QRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFDYHAPFQIDGNFGNTSG 775
Query: 744 VAEMLVQST-----------VKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDL 792
V EML+QS V +LPALP D W G V GL ARG TV WK G
Sbjct: 776 VDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKA 834
Query: 793 HEVGLWSK--EQNSVK 806
EV L S +Q +VK
Sbjct: 835 TEVRLTSNKGKQAAVK 850
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 282 bits (721), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 238/856 (27%), Positives = 374/856 (43%), Gaps = 159/856 (18%)
Query: 53 IPIGNGRLGAMVWGGVASEILQLNEDTLWTGTPGDYTDRKAPE---------ALEEVRKL 103
+P GNG++G VWG V+ E + NE+TLWTG PG T L + K
Sbjct: 51 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 110
Query: 104 VDNGKYFAATEAAVKLSGNPSDV----YQPLGDIKLE--FDDSHLNYTVPSYRRELDLDT 157
+ NG A T L+G + Y GDI L+ F+D+ TV YRR+L+L
Sbjct: 111 LANG---AETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDT----TVTEYRRDLNLSK 163
Query: 158 ATAKISYSVGDVEFTREHFASNPNQXXXXXXXXXXXXXXXXXXXXDSKLHHH-SQVNSTN 216
A +++ V +TRE+FASNP+ KL+ + S +TN
Sbjct: 164 GKADVTFKHDGVTYTREYFASNPDNVMVARLTASKA----------GKLNFNVSMPTNTN 213
Query: 217 QIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRGSI-QTLDDKKLKVEGCDWA 275
+ K + V G+ + + + + + G++ + D LKV
Sbjct: 214 YSKTGETTTVKGDTLTVKGALGNNGLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAV 273
Query: 276 VLLLVASSSFDG--PFTKPSDSEKDPXXXXXXXXXXXXXXXXXDLYARHLDDYQSLFHRV 333
L + A++ + P + ++ + + H+DD+ +++ RV
Sbjct: 274 TLYIAAATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRV 333
Query: 334 SLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQFGR 393
+ L +S ++ DG++ D + +K G+ +TA++ + L L++++GR
Sbjct: 334 KIDLGQSGHSS--DGAVATD---ALLKAYQRGSATTAQKRE---------LETLVYKYGR 379
Query: 394 YLLISCSRPGTQV-ANLQGIW------NKDIEPPWDAAQHLNINLQMNYWPSLPCNLREC 446
YL I SR +Q+ +NLQGIW N PW + H+N+NLQMNYWP+ N+ E
Sbjct: 380 YLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGEL 439
Query: 447 QEPLFDYLSSLSVNGSKTAKVNY-------------EASGYVVHQISDLWAKTSPDRGQA 493
EPL +Y+ L G TAKV E GY+ H + + T+P GQ+
Sbjct: 440 AEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAP--GQS 497
Query: 494 V-WAMWPMGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGG----Y 548
W P W+ +++E Y Y+ D L ++ Y LL+ + F +++++ G
Sbjct: 498 FSWGWSPAAVPWILQNVYEAYEYSGDPALL-DRVYALLKEESHFYVNYMLHKAGSSSGDR 556
Query: 549 LETNPSTSPEHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVL 608
L T + SPE + DG +T + S++ ++ ++ + AA+ G + D L+
Sbjct: 557 LTTGVAYSPEQGPLGTDG--------NTYESSLVWQMLNDAIEAAKAKG-DPDGLVGNTT 607
Query: 609 E-------------------------AQPRLLPTRIARDGSIMEW--------------A 629
+ A+ L P + G I EW
Sbjct: 608 DCSADNWAKNDSGNFTDANANRSWSCAKSLLKPIEVGDSGQIKEWYFEGALGKKKDGSTI 667
Query: 630 QDFQDPDIHHRHLSHLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEG------PGWSTT 683
+Q D HRH+SHL GL+PG IT+D + + AA+ +L R +G GW+
Sbjct: 668 SGYQ-ADNQHRHMSHLLGLFPGDLITIDNS-EYMDAAKTSLRYRCFKGNVLQSNTGWAIG 725
Query: 684 WKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAA 743
+I WA + Y++V E + + +Y+NLF H PFQI NFG ++
Sbjct: 726 QRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFDYHAPFQIAGNFGNTSG 774
Query: 744 VAEMLVQST-----------VKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDL 792
V EML+QS V +LPALP D W G V GL ARG TV WK G
Sbjct: 775 VDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKA 833
Query: 793 HEVGLWSK--EQNSVK 806
EV L S +Q +VK
Sbjct: 834 TEVRLTSNKGKQAAVK 849
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 310 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 356
>pdb|2NSF|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase
Length = 261
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 560 MFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGR--NEDALIKRVLEAQPRLLP 616
M+V+P+ + ++Y ST++ ++ + V+ ++ R +EDA VL AQ R +P
Sbjct: 95 MYVSPEARNEEIAYGSTLNPDALRNLHEHSVARLDVAWRETSEDAWSHEVLTAQGRTVP 153
>pdb|2NSG|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase H52a Mutant
Length = 261
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 560 MFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGR--NEDALIKRVLEAQPRLLP 616
M+V+P+ + ++Y ST++ ++ + V+ ++ R +EDA VL AQ R +P
Sbjct: 95 MYVSPEARNEEIAYGSTLNPDALRNLHEHSVARLDVAWRETSEDAWSHEVLTAQGRTVP 153
>pdb|2EIG|A Chain A, Lotus Tetragonolobus Seed Lectin (Isoform)
pdb|2EIG|B Chain B, Lotus Tetragonolobus Seed Lectin (Isoform)
pdb|2EIG|C Chain C, Lotus Tetragonolobus Seed Lectin (Isoform)
pdb|2EIG|D Chain D, Lotus Tetragonolobus Seed Lectin (Isoform)
Length = 234
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 525 KAYPLLEGCTLFLLDWLIEVP----GGYLETNPSTSPEHMFVA 563
+ YP +G FL W E+P GGYL S++ ++ FVA
Sbjct: 74 QRYPPTDGVVFFLAPWGTEIPPNSQGGYLGITDSSNSQNQFVA 116
>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
Length = 277
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 553 PSTSPEHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNED 601
P + E + V D A++ S ++ ++V+ EIV+AA+ LGR +D
Sbjct: 19 PGSMNEFVSVVADQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDD 67
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 769 SGCVKGLKARGRVTVNICWKEGDLHEVGLWSKEQNSVKRIHYRGRTVTANISI------- 821
SG G K RGRV + + + + L +SK + + + Y T+T +
Sbjct: 1 SGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET 60
Query: 822 GRVYTFNNK 830
G VYTF +
Sbjct: 61 GHVYTFATR 69
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 656 VDKTPDLCKAAENTLHKRGEEGPGWSTTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEA 715
V+K + A +TL R + P T + +++ + E YR +K + + + A
Sbjct: 63 VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA 122
Query: 716 KFEGGLYS 723
KFE G+ S
Sbjct: 123 KFENGVLS 130
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 656 VDKTPDLCKAAENTLHKRGEEGPGWSTTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEA 715
V+K + A +TL R + P T + +++ + E YR +K + + + A
Sbjct: 77 VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA 136
Query: 716 KFEGGLYS 723
KFE G+ S
Sbjct: 137 KFENGVLS 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,580,816
Number of Sequences: 62578
Number of extensions: 1147283
Number of successful extensions: 3034
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2991
Number of HSP's gapped (non-prelim): 24
length of query: 839
length of database: 14,973,337
effective HSP length: 107
effective length of query: 732
effective length of database: 8,277,491
effective search space: 6059123412
effective search space used: 6059123412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)