BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003209
(839 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7W8|FUCO2_ARATH Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1
Length = 843
Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/818 (67%), Positives = 653/818 (79%), Gaps = 28/818 (3%)
Query: 31 GGESSEPLKVTFGGPAKHWTDAIPIGNGRLGAMVWGGVASEILQLNEDTLWTGTPGDYTD 90
G + S PLK+TFGGP+++WTDAIPIGNGRLGA +WGGV+SEIL +NEDT+WTG P DYT+
Sbjct: 45 GQDLSRPLKLTFGGPSRNWTDAIPIGNGRLGATIWGGVSSEILNINEDTIWTGVPADYTN 104
Query: 91 RKAPEALEEVRKLVDNGKYFAATEAAVKLSGNPSDVYQPLGDIKLEFDDSHLNYTVPSYR 150
+KAPEAL EVR+LVD Y AT AVKLSG PSDVYQ +GD+ LEFD SH YT SYR
Sbjct: 105 QKAPEALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLNLEFDSSHRKYTQASYR 164
Query: 151 RELDLDTATAKISYSVGDVEFTREHFASNPNQVIASKISGSKSGSLSFTVSLDSKLHHHS 210
RELDL+TA AK+SYSVG V+F+RE FASNP+QVI +KI SK GSLSF VS DS+LHHHS
Sbjct: 165 RELDLETAVAKVSYSVGAVDFSREFFASNPDQVIIAKIYASKPGSLSFKVSFDSELHHHS 224
Query: 211 QVN-STNQIIMQGSCPDKR--PSPKVMVN------DNPKGVQFTAILDLQISESRGSIQT 261
+ N NQI+M+GSC KR + K +N D+ KG+QF +IL++++S GS+ +
Sbjct: 225 ETNPKANQILMRGSCRPKRLPVNLKKSINATNIPYDDHKGLQFASILEVRVSNG-GSVSS 283
Query: 262 LDDKKLKVEGCDWAVLLLVASSSFDGPFTKPSDSEKDPTSESLSTLKSTKNLSYSDLYAR 321
L KKL VE DWAVLLL ASS+FDGPFT P DS+ DP E ++ + S + SYSDLYAR
Sbjct: 284 LGGKKLSVEKADWAVLLLAASSNFDGPFTMPVDSKIDPAKECVNRISSVQKYSYSDLYAR 343
Query: 322 HLDDYQSLFHRVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDED 381
HL DYQ LF+RVSL LS SS N V + STAERV+SF+TD+D
Sbjct: 344 HLGDYQKLFNRVSLHLSGSSTNETVQQA-----------------TSTAERVRSFKTDQD 386
Query: 382 PALVELLFQFGRYLLISCSRPGTQVANLQGIWNKDIEPPWDAAQHLNINLQMNYWPSLPC 441
P+LVELLFQ+GRYLLIS SRPGTQVANLQGIWN+DI+PPWD A HLNINLQMNYW SLP
Sbjct: 387 PSLVELLFQYGRYLLISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPG 446
Query: 442 NLRECQEPLFDYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAMWPMG 501
N+RECQEPLFDY+S+L++NG KTA+VNY ASG+V HQ+SD+WAKTSPDRG+AVWA+WPMG
Sbjct: 447 NIRECQEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDIWAKTSPDRGEAVWALWPMG 506
Query: 502 GAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSPEHMF 561
GAW+CTH WEHYTYTMDK+FLK K YPLLEGCT FLLDWLI+ G+L+TNPSTSPEHMF
Sbjct: 507 GAWLCTHAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLIKGKDGFLQTNPSTSPEHMF 566
Query: 562 VAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLLPTRIAR 621
AP GK ASVSYSSTMDI+IIKEVF++IVSA+EILG+ D LI +V+ AQ +L PTRI++
Sbjct: 567 TAPIGKPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDTLIGKVIAAQAKLPPTRISK 626
Query: 622 DGSIMEWAQDFQDPDIHHRHLSHLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEGPGWS 681
DGSI EWA+DF+DP++HHRH+SHLFGL+PGHTITV+K+P+L KA E TL KRGEEGPGWS
Sbjct: 627 DGSIREWAEDFEDPEVHHRHVSHLFGLFPGHTITVEKSPELAKAVEATLKKRGEEGPGWS 686
Query: 682 TTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFS 741
TTWK ALWA L NSEHAYRMV H+FDLVDP E +EGGLYSN+FTAHPPFQIDANFGF+
Sbjct: 687 TTWKAALWARLHNSEHAYRMVTHIFDLVDPLNERNYEGGLYSNMFTAHPPFQIDANFGFA 746
Query: 742 AAVAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVGLWSKE 801
AAVAEMLVQST KDLYLLPALP DKW +G V GL+ARG VTV+I W EG+L E GLWS E
Sbjct: 747 AAVAEMLVQSTTKDLYLLPALPADKWPNGIVNGLRARGGVTVSIKWMEGNLVEFGLWS-E 805
Query: 802 QNSVKRIHYRGRTVTANISIGRVYTFNNKLKCVRAYSL 839
Q RI YRG + A + G+V+TF+ L+C+R L
Sbjct: 806 QIVSTRIVYRGISAAAELLPGKVFTFDKDLRCIRTDKL 843
>sp|Q5AU81|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1
Length = 809
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 239/814 (29%), Positives = 377/814 (46%), Gaps = 112/814 (13%)
Query: 55 IGNGRLGAMVWGGVASEILQLNEDTLWTGTP---GDYT--DRKAP--EALEEVR-KLVDN 106
IGNG+LG + +G +E L LN D+LW+G P +YT + +P +AL +R ++ +N
Sbjct: 46 IGNGKLGVIPFGPPDTEKLNLNVDSLWSGGPFEVENYTGGNPSSPIYDALPGIRERIFEN 105
Query: 107 GKYFAATEAAVKLSGNPSDVYQPLGDIKLEFDDSHLNYTVPSYRRELDLDTATAKISYSV 166
G E + SGN + LG+I + D Y+R LDL + S+++
Sbjct: 106 GT--GGMEELLG-SGNHYGSSRVLGNITIALDGVE---AYSKYKRTLDLSDGVHRTSFTI 159
Query: 167 GD---VEFTREHFASNPNQVIASKISGSKSGSL-SFTVSLDSKLHHHSQVNSTNQIIMQG 222
+ F S P+QV + + L T+S+++ L NQ ++Q
Sbjct: 160 ANRTTAALKSSIFCSYPDQVCVYHLESASDARLPKVTISIENLL--------VNQSLLQT 211
Query: 223 SCPD--KRPSPK---VMVNDNPKGVQFTAILDLQISESRGSIQT-LDDKKLKVEGCDWAV 276
SC KR + V P+G+++ A+ ++ R S+ T L + L++ +
Sbjct: 212 SCESEAKRAVLRHSGVTQAGPPEGMKYAAVA--EVVNPRSSVTTCLGEGALQISSRKKQL 269
Query: 277 LLLV-ASSSFDGPFTKPSD-----SEKDPTSESLSTLKSTKNLSYSDLYARHLDDYQSLF 330
+++ A++++D + KDP S + Y L RH+ DY+ L
Sbjct: 270 TIIIGAATNYDQKAGNAKSGWSFKNAKDPASIVDGIASAAGWKGYQRLLDRHVKDYKKLM 329
Query: 331 HRVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQ 390
SL+L ++ + D T E+ +P L LL
Sbjct: 330 GDFSLELPDTTDSASKD------------------TSELIEKYSYASATGNPYLENLLLD 371
Query: 391 FGRYLLISCSRPGTQVANLQGIWNKDIEPPWDAAQHLNINLQMNYWPSLPCNLRECQEPL 450
+ R+LL+S SRP + ANLQG W + + P W A H NINLQMNYW + L E Q L
Sbjct: 372 YARHLLVSSSRPNSLPANLQGRWTESLTPSWSADYHANINLQMNYWLADQTGLGETQHAL 431
Query: 451 FDYLSSLSV-NGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTHL 509
++Y++ V G++TA++ Y ASG+VVH +++ T+ + A WA +P AW+ H+
Sbjct: 432 WNYMADTWVPRGTETARLLYNASGWVVHNEINIFGFTAM-KEDAGWANYPAAAAWMMQHV 490
Query: 510 WEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIE---VPGGYLETNPSTSPEHMFVAPDG 566
W+++ YT D +L ++ Y LL+G F L L E G L NP SPE
Sbjct: 491 WDNFDYTHDTAWLVSQGYALLKGIASFWLSSLQEDKFFNDGSLVVNPCNSPE-------- 542
Query: 567 KQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRL-LPTRIARDGSI 625
++ T +I +VF +++A E + ++ + V A RL ++ G +
Sbjct: 543 -TGPTTFGCTHYQQLIHQVFETVLAAQEYIHESDTKFVDSVASALERLDTGLHLSSWGGL 601
Query: 626 MEWAQDFQDPDIH-------HRHLSHLFGLYPGHTITV----DKTPDLCKAAENTLHKRG 674
EW + PD + HRHLSHL G YPG++I+ + + A + TL RG
Sbjct: 602 KEW----KLPDSYGYDNMSTHRHLSHLAGWYPGYSISSFAHGYRNKTIQDAVKETLTARG 657
Query: 675 -----EEGPGWSTTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAH 729
+ GW+ W+ A WA L +S AY +++ D F G S + A
Sbjct: 658 MGNAADANAGWAKVWRAACWARLNDSSMAYDELRYAID-------ENFVGNGLSMYWGAS 710
Query: 730 PPFQIDANFGFSAAVAEMLV--------QSTVKDLYLLPALPRDKWGSGCVKGLKARGRV 781
PPFQIDANFGF+ AV MLV + + L PA+P WG G KGL+ RG
Sbjct: 711 PPFQIDANFGFAGAVLSMLVVDLPTPRSDPGQRTVVLGPAIP-SAWGGGRAKGLRLRGGA 769
Query: 782 TVNICW-KEGDLHEVGLWSKEQNS--VKRIHYRG 812
V+ W K G ++ V + + + + VK ++ G
Sbjct: 770 KVDFGWDKRGVVNWVNIVKRGKGTSRVKLVNKEG 803
>sp|A2R797|AFCA_ASPNC Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=afcA PE=3 SV=1
Length = 793
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 234/787 (29%), Positives = 354/787 (44%), Gaps = 111/787 (14%)
Query: 50 TDAIPIGNGRLGAMVWGGVASEILQLNEDTLWTGTP-------GDYTDRKAPEALEEVRK 102
T A P+GNGRLGAM G EI+ LN D+LW G P G + AL +R+
Sbjct: 36 TTAFPLGNGRLGAMPIGSYDKEIVNLNVDSLWRGGPFESPTYSGGNPNVSKAGALPGIRE 95
Query: 103 -LVDNGKYFAATEAAVKLSGNPS-DVYQPLGDIKLEFDDSHLNYTVPSYRRELDLDTATA 160
+ NG + L P YQ L ++ ++ + + YRR LDLD+A
Sbjct: 96 WIFQNG----TGNVSALLGEYPYYGSYQVLANLTIDMGELS---DIDGYRRNLDLDSAVY 148
Query: 161 KISYSVGDVEFTREHFASNPNQVIASKISGSKSGSLSFTVSLDSKLHHHSQVNSTNQIIM 220
+S G+ RE F S P+ V ++S S S T L+++L
Sbjct: 149 SDHFSTGETYIEREAFCSYPDNVCVYRLS-SNSSLPEITFGLENQL-------------- 193
Query: 221 QGSCPDKRPSPKVMVNDNPK----------GVQFTAILDLQISESRGSIQTLDDKKLKV- 269
P+P V + N G+ + A + + + S + +KV
Sbjct: 194 ------TSPAPNVSCHGNSISLYGQTYPVIGMIYNARVTVVVPGSSNTTDLCSSSTVKVP 247
Query: 270 EGCDWAVLLLVASSSFDGPF--TKPSDSEK--DPTSESLSTLKSTKNLSYSDLYARHLDD 325
EG L+ A ++++ +K S S K +P + L T + SYS L + H+ D
Sbjct: 248 EGEKEVFLVFAADTNYEASNGNSKASFSFKGENPYMKVLQTATNAAKKSYSALKSSHVKD 307
Query: 326 YQSLFHRVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALV 385
YQ +F++ +L L +GS R T E + S+ DP +
Sbjct: 308 YQGVFNKFTLTLPDP------NGSADR---------------PTTELLSSYSQPGDPYVE 346
Query: 386 ELLFQFGRYLLISCSRPGTQVANLQGIWNKDIEPPWDAAQHLNINLQMNYWPSLPCNLRE 445
LLF +GRYL IS SRPG+ NLQG+W + P W H NINLQMN+W L E
Sbjct: 347 NLLFDYGRYLFISSSRPGSLPPNLQGLWTESYSPAWSGDYHANINLQMNHWAVDQTGLGE 406
Query: 446 CQEPLFDYLSSLSV-NGSKTAKVNYEAS-GYVVHQISDLWAKTSPDRGQAVWAMWPMGGA 503
EPL+ Y++ + G++TA++ Y S G+V H + + T+ + A WA +P A
Sbjct: 407 LTEPLWTYMAETWMPRGAETAELLYGTSEGWVTHDEMNTFGHTAM-KDVAQWADYPATNA 465
Query: 504 WVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIE---VPGGYLETNPSTSPEHM 560
W+ H+W+H+ Y+ D + + YP+L+G F L L++ G L NP SPEH
Sbjct: 466 WMSHHVWDHFDYSQDSAWYRETGYPILKGAAQFWLSQLVKDEYFKDGTLVVNPCNSPEH- 524
Query: 561 FVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLLP-TRI 619
P ++ T +I E+F ++ G ++ + + L P I
Sbjct: 525 --GP--TLTPQTFGCTHYQQLIWELFDHVLQGWTASGDDDTSFKNAITSKFSTLDPGIHI 580
Query: 620 ARDGSIMEWAQDFQDPDIHHRHLSHLFGLYPGHTITV--DKTPDLCKAAENTLHKRG--- 674
G I EW D + HRHLS+L+G YPG+ I+ + A E TL+ RG
Sbjct: 581 GSWGQIQEWKLDIDVKNDTHRHLSNLYGWYPGYIISSVHGSNKTITDAVETTLYSRGTGV 640
Query: 675 -EEGPGWSTTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQ 733
+ GW+ W+ A WA L ++ AY + + D E F+ +++ PPFQ
Sbjct: 641 EDSNTGWAKVWRSACWALLNVTDEAYSELS--LAIQDNFAENGFD------MYSGSPPFQ 692
Query: 734 IDANFGFSAAVAEMLVQST-----------VKDLYLLPALPRDKWGSGCVKGLKARGRVT 782
IDANFG A+ +ML++ + +D+ L PA+P WG G V GL+ RG
Sbjct: 693 IDANFGLVGAMVQMLIRDSDRSSADASAGKTQDVLLGPAIPA-AWGGGSVGGLRLRGGGV 751
Query: 783 VNICWKE 789
V+ W +
Sbjct: 752 VSFSWND 758
>sp|Q2USL3|AFCA_ASPOR Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=afcA PE=3 SV=2
Length = 723
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 208/812 (25%), Positives = 323/812 (39%), Gaps = 167/812 (20%)
Query: 51 DAIPIGNGRLGAMVWGGVASEILQLNEDTLWTGTP-------GDYTDRKAPEALEEVRKL 103
+A +GNG+LG M +G +E L LN D LW G P G + E L EVR
Sbjct: 31 EAYTLGNGKLGVMPFGEPGAEKLNLNHDELWEGGPFEVNGYRGGNPNSSMTEILSEVRDE 90
Query: 104 VDNGKYFAATEAAVKLSGNPSDV--YQPLGDIKLEFDDSHLNYTVPSYRRELDLDTATAK 161
+ + T +L G+ + L ++ + D V Y R LDL T
Sbjct: 91 I----WKKGTGNDSRLHGDTDGYGSFHSLANLTIAIDGID---KVSDYTRSLDLGTGIHT 143
Query: 162 ISYSVGDVEFTREHFASNPNQVIASKISGSKSGSLSFTVSLDSKLHHHSQVNSTNQIIMQ 221
+YS G ++T + + S P QV K++ + + S T+ D + S N+T
Sbjct: 144 TTYSTGKGKYTTDVYCSYPAQVCIYKLNSTATLS-KVTIYFDQLVEESSLWNAT------ 196
Query: 222 GSCPDKRPSPKVMVNDNP-KGVQFTAILDLQISESRGSIQTLDDK---KLKVEGCDWAVL 277
C + + + P +G+ + I +R SI D KL + + + L
Sbjct: 197 --CDSDFARLRGVTQEGPPRGMTYDTI-------ARSSIPGRCDSSTGKLAINARNSSSL 247
Query: 278 LLV--ASSSFDG----PFTKPSDSEKDPTSESLSTLKSTKNLSYSDLYARHLDDYQSLFH 331
+V A + FDG T + +DP S + S S L H++DY L
Sbjct: 248 TIVIGAGTDFDGTKGTAATDYTFKGEDPAEYVEKITSSALSQSESKLRTEHIEDYSGLMS 307
Query: 332 RVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQF 391
+L L + +T + S N+ ++ +TD DP L +LLF +
Sbjct: 308 AFTLDLPDTQDSTGTELSTLITNYNAN------------------KTDGDPYLEKLLFDY 349
Query: 392 GRYLLISCSRPGTQVANLQGIWNKDIEPPWDAAQHLNINLQMNYWPSLPCNLRECQEPLF 451
GR+L IS SR AN SLP NL+ P
Sbjct: 350 GRHLFISSSR-----AN-----------------------------SLPPNLQGVWSPT- 374
Query: 452 DYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTHLWE 511
+ + +G A +N + +LW + G+ A+
Sbjct: 375 ---KNAAWSGDYHANINLQM---------NLWGAEATGLGELTVAV-------------- 408
Query: 512 HYTYTMDKDFLKNKA--YPLLEGCTLFLLDWLIEVPG--GYLETNPSTSPEHMFVAPDGK 567
+ Y M+++++ A LL G ++ + + G G L NP TSPE
Sbjct: 409 -FNY-MEQNWMPRGAETAELLYGGAGWVTHDEMNIFGHTGSLVVNPCTSPE--------- 457
Query: 568 QASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRL-LPTRIARDGSIM 626
Q ++ T +I +V+ + AEI G + L+K + + PRL I G I
Sbjct: 458 QGPTTFGCTHWQQLIHQVYENAIQGAEIAGETDSTLLKDIKDQLPRLDKGLHIGTWGQIK 517
Query: 627 EW----AQDFQDPDIHHRHLSHLFGLYPGHTITVD----KTPDLCKAAENTLHKRG---E 675
EW + D++ HRHLSHL G YPG +++ + A +L RG
Sbjct: 518 EWKLPDSYDYEKEGNEHRHLSHLVGWYPGWSLSSYFNGYNNATIQSAVNTSLISRGVGLY 577
Query: 676 EGPGWSTTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGL--YSNLFTAHPPFQ 733
GW W+ A WA L N+E A+ ++ D + + GL YS T FQ
Sbjct: 578 TNAGWEKVWRSACWARLNNTEKAHYELRLTID------QNIGQSGLSLYSGGDTPSGAFQ 631
Query: 734 IDANFGFSAAVAEMLV----------QSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTV 783
IDANFG+ AV MLV + V+ + L PA+P W G VKGL+ RG +V
Sbjct: 632 IDANFGYLGAVLSMLVVDMPLDSTHSEDDVRTVVLGPAIPA-AWAGGSVKGLRLRGGGSV 690
Query: 784 NICWKEGDLHEVGLWSKEQNSVKRIHYRGRTV 815
+ W L + + ++V+ ++ G +
Sbjct: 691 DFSWDSEGLVDKASATGVSSNVRIVNVEGTVL 722
>sp|Q92902|HPS1_HUMAN Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1
SV=2
Length = 700
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 21 WNPSGTVGDGGGESSEPLKVTFGGPAKHWTDAIPIGNGRLGAMVW---GGVASEILQLNE 77
W+P T G GG S+E +F P +++T A G+ G+ +W G + LQ+ E
Sbjct: 274 WSPHST-GPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAE 332
Query: 78 DTLWTGTP 85
DTL T P
Sbjct: 333 DTLQTLVP 340
>sp|Q5XIR4|CCD33_RAT Coiled-coil domain-containing protein 33 OS=Rattus norvegicus
GN=Ccdc33 PE=2 SV=1
Length = 775
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 586 FSEIVSAAEILGRNED--ALIKRVLEAQPRLLPTRIARDGSIMEWAQDFQDPDIHHRHLS 643
++E + A + LG D +L+ ++ +AQ R+L + S WA++ Q+ I +
Sbjct: 657 YTETMPAQDFLGGTSDKFSLLAKLEQAQSRILSLENQLEESARHWAREKQNLAIRLQEQQ 716
Query: 644 HLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEGPGWSTTWKIALWAHL 692
H FG P ++I VD+ P ++ +T ++ + G+ + L HL
Sbjct: 717 HGFGQSP-NSIIVDQ-PHFARSQGSTTPRQNLKDEGYPGNIERPLQTHL 763
>sp|B0TYL2|GREA_FRAP2 Transcription elongation factor GreA OS=Francisella philomiragia
subsp. philomiragia (strain ATCC 25017) GN=greA PE=3
SV=1
Length = 160
Score = 35.8 bits (81), Expect = 1.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 99 EVRKLVDNGKY-FAATEAAVKLSGNPSDVYQPLGDIKLEFDDSHLNYTVPSYRR------ 151
+V KL NG F AT + + YQ +G+ + + D+ ++ P R
Sbjct: 78 DVTKLQANGMVIFGATVTVINVDTEEETTYQIVGEDEADIDNHKISVVAPLARALIKKEV 137
Query: 152 --ELDLDTATAKISYSVGDVEF 171
E+ LDT K++Y + DVE+
Sbjct: 138 GDEIILDTPKGKVTYEIVDVEY 159
>sp|P70168|IMB1_MOUSE Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2
Length = 876
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>sp|P52296|IMB1_RAT Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1
Length = 875
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 434 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 480
>sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2
Length = 876
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 744 VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRVTVNICWKEGDLHEVG 796
+ E+L ++ + D+YL P L ++GL A RV N+CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>sp|Q6NRY2|NOL6_XENLA Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2
Length = 1147
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 293 SDSEKDPTSESLSTLKSTKNLSYSDLYARHLDDYQSLFHRVSLQLSKSSKNTCVDGSLKR 352
SD K PT++ L+ LK T+NL +++L +++ L V L K + +DG L
Sbjct: 58 SDLYKPPTNDELNRLKETENLFHTNLLRMQIEE---LLQEVKL---KEKRRKTIDGFLHE 111
Query: 353 DN-------HASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQF---------GRYLL 396
N +D +S++ +V Q P V+ F F G YLL
Sbjct: 112 INALLGTIPETPKTDLTDQSWLSSSIKVPFLQV---PYQVKGKFSFLPPSSIKVVGSYLL 168
Query: 397 ISCSRPGTQV 406
+C +P V
Sbjct: 169 GTCIKPEINV 178
>sp|Q2K2T6|PUR9_RHIEC Bifunctional purine biosynthesis protein PurH OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=purH PE=3 SV=1
Length = 538
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 149 YRRELDLDTATAKISYSVGDVEFTREHFASNPNQVIASKISGSKSGSLSFTVSLDSKLHH 208
+ L +DT ++ +G V + NP+Q A ++G K +S V L K
Sbjct: 204 FAEALSIDTPRHRV---IGGVLKEEMRYGENPHQRAAFYVTGEKRPGVSTAVLLQGKQLS 260
Query: 209 HSQVNSTNQI--IMQGSCPDKRPSPKVMVNDNPKGV 242
++ +N T+ ++ P++ P+ ++ + NP GV
Sbjct: 261 YNNINDTDAAYELVAEFLPERAPACAIIKHANPCGV 296
>sp|Q91FD6|388R_IIV6 Putative MSV199 domain-containing protein 388R OS=Invertebrate
iridescent virus 6 GN=IIV6-388R PE=3 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 23/182 (12%)
Query: 97 LEEVRKL-VDNGKYFAATEAAV---KLSGNPSDVYQPLGDIKLEFDDSHLNYTVPSYRRE 152
LEE+ KL ++ YF EA + K + + + L ++KLE + H +
Sbjct: 161 LEELIKLYLEYSLYFKEREAQIEKQKSQFHIETLEKKLDEMKLEAEKRHDELLDKVEEVQ 220
Query: 153 LDLDTATAKISYSVGD------VEFTREHFAS-NPNQVIASKISGSKSGSLSFTVSLDSK 205
DL+ K+ +V D E RE F N N AS G + ++ K
Sbjct: 221 YDLNVVGEKLDIAVEDRAPKVKAELLRERFVVLNRNDKRASCQYYVMRGQDHY---INGK 277
Query: 206 LHHHSQVNSTNQIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRGSIQTLDDK 265
+ + ++ +II SC +P+P+ + V+F + D + +IQTLD+K
Sbjct: 278 IFSYKNLHPNLKIIFDISC---QPNPRNLF------VRFKELKDNRFKVVGNNIQTLDEK 328
Query: 266 KL 267
L
Sbjct: 329 AL 330
>sp|Q9LFV3|Y5157_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein
kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730
PE=2 SV=1
Length = 436
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 146 VPSYRRELDLDTATAKISYSVGDVEFTREHFASNPN-QVIASKISGSKS--GSLSFT--V 200
+P Y + D+ AT + +G F + A PN ++ A+K+ GS S G F V
Sbjct: 101 IPRYNYK-DIQKATQNFTTVLGQGSFGPVYKAVMPNGELAAAKVHGSNSSQGDREFQTEV 159
Query: 201 SLDSKLHHHSQVNSTNQIIMQGSCPDK 227
SL +LHH + VN T G C DK
Sbjct: 160 SLLGRLHHRNLVNLT------GYCVDK 180
>sp|B3PS36|PUR9_RHIE6 Bifunctional purine biosynthesis protein PurH OS=Rhizobium etli
(strain CIAT 652) GN=purH PE=3 SV=1
Length = 538
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 166 VGDVEFTREHFASNPNQVIASKISGSKSGSLSFTVSLDSKLHHHSQVNSTNQI--IMQGS 223
+G V + NP+Q A ++G K +S V L K ++ +N T+ ++
Sbjct: 218 IGGVLKEEMRYGENPHQKAAFYVTGEKRPGVSTAVLLQGKQLSYNNINDTDAAYELVAEF 277
Query: 224 CPDKRPSPKVMVNDNPKGV 242
P+K P+ ++ + NP GV
Sbjct: 278 LPEKAPACAIIKHANPCGV 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,301,867
Number of Sequences: 539616
Number of extensions: 14714411
Number of successful extensions: 34595
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 34529
Number of HSP's gapped (non-prelim): 99
length of query: 839
length of database: 191,569,459
effective HSP length: 126
effective length of query: 713
effective length of database: 123,577,843
effective search space: 88111002059
effective search space used: 88111002059
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)