Query 003209
Match_columns 839
No_of_seqs 212 out of 1194
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 19:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13807 maltose phosphorylase 100.0 5.8E-52 1.3E-56 495.6 60.8 570 141-827 103-756 (756)
2 COG1554 ATH1 Trehalose and mal 100.0 3.3E-50 7.1E-55 466.0 51.3 557 141-803 100-746 (772)
3 PF14498 Glyco_hyd_65N_2: Glyc 100.0 9.8E-53 2.1E-57 443.5 22.6 231 40-287 1-235 (236)
4 PF03632 Glyco_hydro_65m: Glyc 100.0 1.6E-37 3.5E-42 344.3 18.3 320 391-754 2-362 (370)
5 KOG4125 Acid trehalase [Carboh 99.9 1.6E-23 3.5E-28 225.9 37.1 374 303-748 210-598 (682)
6 TIGR01577 oligosac_amyl oligos 98.3 0.0015 3.4E-08 78.8 35.6 232 437-707 306-574 (616)
7 PF10222 DUF2152: Uncharacteri 98.3 4.2E-05 9E-10 90.2 19.7 167 152-340 136-321 (604)
8 PF05592 Bac_rhamnosid: Bacter 97.9 2.8E-05 6.2E-10 91.6 9.9 264 502-805 206-505 (509)
9 PF06202 GDE_C: Amylo-alpha-1, 97.1 0.027 5.8E-07 64.0 18.9 241 501-748 85-369 (370)
10 PF04685 DUF608: Protein of un 96.7 0.0015 3.2E-08 73.8 4.7 168 435-615 23-203 (365)
11 PF03636 Glyco_hydro_65N: Glyc 96.6 0.051 1.1E-06 58.4 15.6 63 142-206 92-164 (255)
12 COG3459 Cellobiose phosphoryla 96.5 3.5 7.6E-05 51.1 31.1 102 502-615 671-794 (1056)
13 PF03633 Glyco_hydro_65C: Glyc 96.1 0.017 3.7E-07 46.8 6.3 43 760-809 1-44 (54)
14 TIGR01535 glucan_glucosid gluc 96.0 4.5 9.7E-05 49.3 28.6 224 301-615 210-439 (648)
15 COG3408 GDB1 Glycogen debranch 95.7 0.41 8.8E-06 58.1 18.2 295 442-781 300-637 (641)
16 COG3387 SGA1 Glucoamylase and 95.2 1 2.3E-05 54.4 19.4 274 403-707 262-565 (612)
17 PRK13271 treA trehalase; Provi 93.2 2 4.3E-05 51.4 15.7 88 431-539 158-247 (569)
18 COG4354 Predicted bile acid be 92.3 8.9 0.00019 45.2 18.6 192 384-598 322-531 (721)
19 TIGR01561 gde_arch glycogen de 90.3 4 8.7E-05 49.0 14.1 106 501-615 349-461 (575)
20 PRK10137 alpha-glucosidase; Pr 89.7 63 0.0014 40.4 39.5 45 504-549 421-465 (786)
21 PRK13272 treA trehalase; Provi 89.5 13 0.00028 44.4 17.1 88 431-539 159-248 (542)
22 PLN02567 alpha,alpha-trehalase 73.7 5.6 0.00012 47.7 6.0 36 503-539 206-241 (554)
23 PRK13270 treF trehalase; Provi 73.6 2.1E+02 0.0046 34.4 20.4 286 431-752 170-546 (549)
24 PF01204 Trehalase: Trehalase; 66.6 4.5 9.9E-05 48.0 3.2 89 431-539 127-217 (512)
25 KOG0602 Neutral trehalase [Car 57.1 21 0.00046 42.7 6.3 41 504-545 240-280 (600)
26 TIGR01531 glyc_debranch glycog 56.7 1.8E+02 0.0038 38.8 14.7 30 719-748 1429-1458(1464)
27 TIGR02564 cas_Csy1 CRISPR-asso 56.1 28 0.0006 39.7 6.8 20 751-771 217-236 (384)
28 PF09611 Cas_Csy1: CRISPR-asso 50.9 31 0.00067 39.4 6.2 19 752-771 218-236 (378)
29 COG3537 Putative alpha-1,2-man 35.4 2.2E+02 0.0047 34.8 9.9 61 264-336 253-313 (768)
30 PF12439 GDE_N: Glycogen debra 29.9 2.8E+02 0.0061 29.2 9.1 52 149-201 75-127 (223)
31 PF07470 Glyco_hydro_88: Glyco 27.7 2.7E+02 0.0058 30.9 9.0 88 452-549 144-234 (336)
32 KOG2119 Predicted bile acid be 27.5 1.8E+02 0.0039 35.7 7.6 95 506-612 563-658 (879)
33 KOG3778 Uncharacterized conser 27.0 2.8E+02 0.006 32.3 8.6 27 312-339 287-313 (603)
34 PF03550 LolB: Outer membrane 26.7 2.4E+02 0.0052 27.9 7.5 62 766-828 4-68 (157)
35 COG1331 Highly conserved prote 26.0 6.1E+02 0.013 31.3 11.7 52 501-557 274-325 (667)
36 PF09087 Cyc-maltodext_N: Cycl 24.9 1.7E+02 0.0037 26.5 5.3 46 154-201 24-70 (88)
37 PF07971 Glyco_hydro_92: Glyco 20.1 3.3E+02 0.0072 32.5 8.1 48 277-336 16-64 (502)
No 1
>PRK13807 maltose phosphorylase; Provisional
Probab=100.00 E-value=5.8e-52 Score=495.63 Aligned_cols=570 Identities=16% Similarity=0.160 Sum_probs=391.4
Q ss_pred CCCCCCCCeEEEEeccccEEEEE--EEECC--EEEEEEEEEecCCC-EEEEE--EEeC-CCCceEEEEEecCCCCCCee-
Q 003209 141 HLNYTVPSYRRELDLDTATAKIS--YSVGD--VEFTREHFASNPNQ-VIASK--ISGS-KSGSLSFTVSLDSKLHHHSQ- 211 (839)
Q Consensus 141 ~~~~~~~~Y~R~LDL~~gv~~v~--y~~~g--~~~~re~F~S~pd~-viv~r--i~a~-~~~~l~~~l~l~~~~~~~~~- 211 (839)
...+. +|+|+|||++|+++-+ |+.+| ++++-+.|||..+. +++++ |++. ..+.|.+.-.++........
T Consensus 103 ~~~i~--~~~r~LDl~~G~l~r~~~~~~~G~~~~i~~~Rfvs~~~~~l~~~~~~i~~~n~~~~i~i~s~idg~v~n~~~~ 180 (756)
T PRK13807 103 KCEVS--DFELELDMKEGVLTRSFTVLKNGKEVRVEAERFLSIAQKELAVIKYSVTSLNGEAKITFDSYLDGDVKNEDSN 180 (756)
T ss_pred CCchh--eeEEEEEccceEEEEEEEEEECCeEEEEEEEEEecCCCCEEEEEEEEEEEcCCcEEEEEEecccCccccCCcc
Confidence 35677 9999999999999744 55334 67788999999987 44555 5663 45677777777654332100
Q ss_pred --------ec---CCCEEEEEEecCCCCCCCCcccCCCCCceEEEEEEEEEEeCCce----eEEEecCC------eEEEE
Q 003209 212 --------VN---STNQIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRG----SIQTLDDK------KLKVE 270 (839)
Q Consensus 212 --------~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G----~v~~~~~~------~l~v~ 270 (839)
.. ..+...+..++... .......+..+.+. .+..+ .+.. ... ++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~T~~s----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~l~ 248 (756)
T PRK13807 181 YDEKFWQVLEKGADATRAFIVTKTKPN----------PFGVPQFTVAAKMS-NRTNGKVVPGVET-KEKYVENSFTADVK 248 (756)
T ss_pred hhhhcceeecccccCCCcEEEEEEecC----------CCcceeEEEEEeee-ccccccccceeec-cCcEEEEEEEEEEc
Confidence 00 01111122221100 00011122221111 11001 1111 111 24466
Q ss_pred cCcEEEE--EEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEEEccCCCccccCC
Q 003209 271 GCDWAVL--LLVASSSFDGPFTKPSDSEKDPTSESLSTLKSTKNLSYSDLYARHLDDYQSLFHRVSLQLSKSSKNTCVDG 348 (839)
Q Consensus 271 ~a~~v~l--~~~~~T~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~~y~~L~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~ 348 (839)
..++++| ++++.|+.+. . ..++...|.+.+..+...+|++|+++|++.|+++|++++|+|.+++.
T Consensus 249 ~g~~~~leK~v~v~ts~d~--~-----~~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~~------ 315 (756)
T PRK13807 249 AGETVTLEKRVIVVTSRDY--E-----ESELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDDA------ 315 (756)
T ss_pred CCCEEEEEEEEEEEECCCC--C-----chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCHH------
Confidence 7777776 7777787652 1 34566778888888888899999999999999999999999987532
Q ss_pred CcccCCccccccccCCCCCchHHHHhhccCCCcHHHHHHHHHHHhHHhhhcC-C-CC--CC-CCCCccccCCCCCCCCCC
Q 003209 349 SLKRDNHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQFGRYLLISCS-R-PG--TQ-VANLQGIWNKDIEPPWDA 423 (839)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYlLisss-R-~g--~~-P~~LqGiWn~~~~~~W~g 423 (839)
.|+..| |..|+|+++. + .. ++ |.+|+|. .+.|
T Consensus 316 ---------------------~q~alr---------------~~~fhL~~s~~~~~~~~~i~a~GLsge-------~Y~G 352 (756)
T PRK13807 316 ---------------------AQQGIR---------------FNIFQLFSTYYGEDARLNIGPKGFTGE-------KYGG 352 (756)
T ss_pred ---------------------HHHHHH---------------HHHHHHHhccCCCCCCCCcCCCCCCcC-------CcCC
Confidence 444433 4555555553 2 22 23 3477773 7889
Q ss_pred ccccccccccccccc-cCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCCcccc---cc
Q 003209 424 AQHLNINLQMNYWPS-LPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAM---WP 499 (839)
Q Consensus 424 ~yh~niN~qm~ywpa-~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~---w~ 499 (839)
+ ++|++|+.+.|+ +....||.++.|++||++.|+.||++|++ +|++||+|||.+. -|. ..++.|.. -.
T Consensus 353 h--~FWDtE~f~lP~~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~----E~~~~w~~~~~e~ 424 (756)
T PRK13807 353 A--TYWDTEAYCVPFYLATADPEVTRNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGI----ECHNEWEITFEEI 424 (756)
T ss_pred e--eeeccchhhhhhhhhccCHHHHHHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCC----cCCCCcCCCceeE
Confidence 5 557799999999 56899999999999999999999999999 7999999997753 221 11223321 12
Q ss_pred cCHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcC-CCeEEECCCCCC-CCcccCCCCCCcccccCcHH
Q 003209 500 MGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVP-GGYLETNPSTSP-EHMFVAPDGKQASVSYSSTM 577 (839)
Q Consensus 500 ~~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~ 577 (839)
.-+++||+++|+||..|+|.+||+++++|||.|+|+||.+++.+++ +|+|+|..+++| |++. .++||+|
T Consensus 425 HI~adIaya~~~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~---------~vdNNay 495 (756)
T PRK13807 425 HRNGAIAYAIYNYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYEN---------NVNNNWY 495 (756)
T ss_pred echHHHHHHHHHHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCC---------CCCCchh
Confidence 3489999999999999999999999999999999999999999876 889999999999 8873 5799999
Q ss_pred HHHHHHHHHHHHHHHHHH--------hCCCcHHHHHHHHHHhcCCC-CCCCCCCCc---------eeeeccc-CCC---C
Q 003209 578 DISIIKEVFSEIVSAAEI--------LGRNEDALIKRVLEAQPRLL-PTRIARDGS---------IMEWAQD-FQD---P 635 (839)
Q Consensus 578 d~~~ir~ll~~~~ea~~~--------Lg~d~~~~~~~w~~~~~~L~-p~~i~~~G~---------l~ew~~~-~~~---~ 635 (839)
||.|++++|+.++++++. |+++ +++.++|++++++|. |+.- ..|. +.+|..+ +.. +
T Consensus 496 TN~ma~~~l~~A~~~~~~l~~~~~~~l~~~-~~e~~~w~~ia~~~~lp~~~-~~gi~~q~dgy~~l~~~d~~~~~~~~~~ 573 (756)
T PRK13807 496 TNYIAAWTLEYTLENLDKVKKEAPARLNVT-EEELAKWQDIVDKMYLPYDE-ELGIFVQHDGFLDKDLRPVSDLPPDQRP 573 (756)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHhcCC-HHHHHHHHHHHhCeEecccC-CCCEEEccCCccccccCchhhcccccCC
Confidence 999999999999998864 5555 667889999999998 5532 2232 2333211 110 0
Q ss_pred CCCCCccc------------cccccCCCCCCCCCCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhcCChhHHHHHHH
Q 003209 636 DIHHRHLS------------HLFGLYPGHTITVDKTPDLCKAAENTLHKRGEEGPGWSTTWKIALWAHLRNSEHAYRMVK 703 (839)
Q Consensus 636 ~~~hRh~s------------hL~~l~Pg~~i~~~~~p~l~~aa~~tl~~Rg~~~sgwS~a~~~~~aARLgd~e~A~~~l~ 703 (839)
-..|.|.- -++.+||... ..+++.+......++.|+.|+|++|++.+++++|++|+.++|+++|+
T Consensus 574 ~~~~~~~~~i~~~qviKQADvvll~yll~~---~f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~ 650 (756)
T PRK13807 574 INQNWSWDRILRSPFIKQADVLQGIYFFED---RFTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYL 650 (756)
T ss_pred cccccCHHHHhcccEecHHHHHHHhccCCC---CCCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHH
Confidence 01112211 1345555432 24667777777888899999999999999999999999999999999
Q ss_pred HHHhccCCccccccCCCcccccccCCCCccccccchHHHHHHHHhheec------CCeeeeCCCCCccccCCeeeecEEe
Q 003209 704 HLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAAVAEMLVQST------VKDLYLLPALPRDKWGSGCVKGLKA 777 (839)
Q Consensus 704 ~~l~~~d~~~~~~~~~~~~~nl~~~h~pfqidgn~g~~agi~emLlqs~------~g~I~llPalP~~~W~~gs~~gLra 777 (839)
+.+. +|+++.. +.+-.+ | +.++++|++.++++.. .+.++|.|.|| ++|+..+|+ ++.
T Consensus 651 ~a~~-~Dl~~~~---~~t~~G---------i--H~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~ 713 (756)
T PRK13807 651 RTAR-LDLDNYN---NDTEDG---------L--HITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INF 713 (756)
T ss_pred HHHH-hhhhhcc---CCCCcc---------h--hhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEE
Confidence 9988 6665431 111111 1 3578888999987754 46799999999 999999997 999
Q ss_pred eee-EEEEEEEeCCeEEEEEEEeCCCCcEEEEEeCCeEEEEEccCceEEEE
Q 003209 778 RGR-VTVNICWKEGDLHEVGLWSKEQNSVKRIHYRGRTVTANISIGRVYTF 827 (839)
Q Consensus 778 rG~-~~V~~~w~~g~~~~~~i~s~~~~~~~~l~~~~~~~~~~~~~G~~~~~ 827 (839)
||. +.|.+ +..+ ++|+...|.++ +|...+..+.+ ..|++.++
T Consensus 714 rG~~l~v~i--~~~~---~~i~~~~g~~l-~i~v~g~~~~l--~~g~~~~~ 756 (756)
T PRK13807 714 RGRLLKVKV--DKQE---VTIELLSGEPL-TIEVYGKKVEL--KKGVTVTV 756 (756)
T ss_pred CCeEEEEEE--ECCE---EEEEEcCCCcE-EEEECCEEEEE--cCCcEeeC
Confidence 998 56666 3333 45555566556 66644433333 36766553
No 2
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=466.01 Aligned_cols=557 Identities=18% Similarity=0.204 Sum_probs=374.9
Q ss_pred CCCCCCCCeEEEEeccccEEEEEEEECC-----EEEEEEEEEecCCC-EEEEE--EEeCC-CCceEEEEEecCCCCCCe-
Q 003209 141 HLNYTVPSYRRELDLDTATAKISYSVGD-----VEFTREHFASNPNQ-VIASK--ISGSK-SGSLSFTVSLDSKLHHHS- 210 (839)
Q Consensus 141 ~~~~~~~~Y~R~LDL~~gv~~v~y~~~g-----~~~~re~F~S~pd~-viv~r--i~a~~-~~~l~~~l~l~~~~~~~~- 210 (839)
..++. +|+|+|||++|+++.++.... ++++-+.|||..++ +++++ |++.. .+.+.+.-.++.......
T Consensus 100 ~~~V~--~y~r~LDm~~G~L~r~~~~~~~~g~~i~l~seRfvs~~~~~l~ai~~~I~~~~~~~~v~i~~~iD~~~~N~~~ 177 (772)
T COG1554 100 AGEVL--SYERELDMKKGLLTRSLRWRSPAGKQITLTSERFVSLAQKHLAAIRYEITALDGDGQVLIVTIIDGNVTNTGV 177 (772)
T ss_pred cccee--eeeEEeehhccEEEEEEEEEcCCCCEEEEEEEEEEecccceeEEEEEEEEEcCCceEEEEeecccccccCCCc
Confidence 45677 999999999999986644432 78899999999876 55555 56665 355555555555432211
Q ss_pred ee-------cCCCEEEEEEecCCCCCCCCcccCCCCCceEEEEEEEEEEeCC--ceeEEEe---cCC--eEEEEcCcEEE
Q 003209 211 QV-------NSTNQIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISES--RGSIQTL---DDK--KLKVEGCDWAV 276 (839)
Q Consensus 211 ~~-------~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~--~G~v~~~---~~~--~l~v~~a~~v~ 276 (839)
.. ...+.+.+.++.... ... ...+...|++.......+. ..++... .+. .+.++...+|+
T Consensus 178 ~~~e~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~v~ 251 (772)
T COG1554 178 NYLEIFWQHLFDQEIEVQEQTVLK-TIS-----NPFSYITFAVAAESSVSGDGVQESFAAKDRRLGIEIEILLKAGQTVT 251 (772)
T ss_pred hhHhhhchhhhhhhhhhhhccccc-ccc-----ccchhhHHHHHHhhccCCCCceeeeeecccccceeEEEEecCCCeEE
Confidence 00 000111111111000 000 0000111111111111100 0001110 011 23355667777
Q ss_pred E--EEEeeecCCCCCCCCCCCCCChHHHHHH-HHHHhhcCCHHHHHHHHHHHHHhhhcceeEEEccCCCccccCCCcccC
Q 003209 277 L--LLVASSSFDGPFTKPSDSEKDPTSESLS-TLKSTKNLSYSDLYARHLDDYQSLFHRVSLQLSKSSKNTCVDGSLKRD 353 (839)
Q Consensus 277 l--~~~~~T~~~~~~~~~~~~~~~~~~~a~~-~l~~a~~~~y~~L~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~~~~~~ 353 (839)
| ++.+.||.+. . ..+....+.+ .++.+.+.+|++|+++|++.|.++|++++|+|+|++.
T Consensus 252 leK~v~v~tS~d~--~-----~~e~~~~~~~~~~~~~~~~~y~~Ll~~h~~aW~~~W~~adI~Iegd~~----------- 313 (772)
T COG1554 252 LEKYVTVFTSRDR--E-----LDELLNAALEALLKLASKGGYEKLLAAHKAAWDDLWEKADIEIEGDPE----------- 313 (772)
T ss_pred EEEEEEEEecccc--c-----hhhhhhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHhcCEEecCCHH-----------
Confidence 7 8888888652 1 1223333333 5667778899999999999999999999999998643
Q ss_pred CccccccccCCCCCchHHHHhhccCCCcHHHHHHHHHHHhHHhhhcCC-C---CCCC-CCCccccCCCCCCCCCCccccc
Q 003209 354 NHASHIKESDHGTVSTAERVKSFQTDEDPALVELLFQFGRYLLISCSR-P---GTQV-ANLQGIWNKDIEPPWDAAQHLN 428 (839)
Q Consensus 354 ~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYlLisssR-~---g~~P-~~LqGiWn~~~~~~W~g~yh~n 428 (839)
+|+..| |+.|+|.+.++ . -++| .+|+|. .++| |..
T Consensus 314 ----------------~Q~avR---------------fnLFhL~~~~~~~d~rlsIgaKGltGe-------gY~G--hvf 353 (772)
T COG1554 314 ----------------AQQAVR---------------FNLFHLLQTTPGHDERLSIGAKGLTGE-------GYGG--HVF 353 (772)
T ss_pred ----------------HHHHHH---------------HHHHHHHhhccCcccCCCCCCCCcCcc-------ccCC--eee
Confidence 555554 44455544442 1 1344 488886 8889 577
Q ss_pred cccccccccccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCCcccc---------cc
Q 003209 429 INLQMNYWPSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAM---------WP 499 (839)
Q Consensus 429 iN~qm~ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~---------w~ 499 (839)
|++|....|++..+.|++++.|+.||++.++.||++|++ +|..|++|||.|-.-|. ...+.|.. |+
T Consensus 354 WDTEif~lP~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~-~G~~GAlyPW~S~~~G~----E~t~~w~~~~~~~~~~~~~ 428 (772)
T COG1554 354 WDTEIFVLPFLLFTDPEVARNLLLYRYNTLPGAKENAKK-YGLKGALYPWESATDGD----ECTPEWEATFERTGWRVAS 428 (772)
T ss_pred ecchHHhhhhhhccChHHHHHHHHHHHhcCHHHHHHHHH-cCCCcccceeeecCCCC----ccCCcccccccccccccCc
Confidence 889999999999999999999999999999999999999 89999999976643121 11233332 21
Q ss_pred c-----CHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcC-CCeEEECCCCCC-CCcccCCCCCCcccc
Q 003209 500 M-----GGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVP-GGYLETNPSTSP-EHMFVAPDGKQASVS 572 (839)
Q Consensus 500 ~-----~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~ 572 (839)
. -++.||+++|.|+++|||++||++.++|+|.|+|+||++++..+. +|+|+|..+++| |++. .+
T Consensus 429 ~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~~~~~~~~y~I~gV~GPdEY~~---------~I 499 (772)
T COG1554 429 SDREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVHFSDRNGRYEIHGVTGPDEYHN---------HV 499 (772)
T ss_pred cccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHheecccCCeEEEecCcCchhhhc---------cc
Confidence 1 278999999999999999999999999999999999999999965 899999999999 8873 57
Q ss_pred cCcHHHHHHHHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHhcCCC-CCCCCCCCceeeec-------ccCCCCC
Q 003209 573 YSSTMDISIIKEVFSEIVSAAE--------ILGRNEDALIKRVLEAQPRLL-PTRIARDGSIMEWA-------QDFQDPD 636 (839)
Q Consensus 573 ~n~t~d~~~ir~ll~~~~ea~~--------~Lg~d~~~~~~~w~~~~~~L~-p~~i~~~G~l~ew~-------~~~~~~~ 636 (839)
+||+|||.|++|+|+.++++++ .|++. .+++.+|+++.++|. |+.. +.|-+.+.. .++...+
T Consensus 500 nNN~fTN~ma~w~L~~ale~~~~~~~~~~~~l~it-~ee~~~w~di~~~my~p~de-~~gv~~Q~dgf~~l~~~~~~~~~ 577 (772)
T COG1554 500 NNNAFTNLMAAWNLEYALEILEWLWSELREKLNVT-TEEIEKWADIAKKMYYPEDE-ELGVIAQFDGFLDLEEIDLDAYE 577 (772)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCCCCc-ccCceeeccchhhhhhCChhhcc
Confidence 9999999999999999999887 47888 889999999999998 5432 224322110 0111111
Q ss_pred CCCCccccccccCCCCCCCC---CCCHH---------------HHHHHHHHhhhcCCCCCChhHHHHHHHHHhcCChhHH
Q 003209 637 IHHRHLSHLFGLYPGHTITV---DKTPD---------------LCKAAENTLHKRGEEGPGWSTTWKIALWAHLRNSEHA 698 (839)
Q Consensus 637 ~~hRh~shL~~l~Pg~~i~~---~~~p~---------------l~~aa~~tl~~Rg~~~sgwS~a~~~~~aARLgd~e~A 698 (839)
+.-...+.++. |-...+.. .|+++ -++.....+++|+.|+|++|++.|++++|+||..+.|
T Consensus 578 ~~~~~~~~~~~-~~~~~~~~~q~iKQADvlm~~Yl~~~~F~~~~i~~N~dyY~~rTvh~SSLSp~ihaila~~lg~~~~A 656 (772)
T COG1554 578 AAAGPLSQLLS-YDRESVLRSQFIKQADVLMLLYLLPDLFSPETIKRNFDYYEPRTVHDSSLSPAIHAILAAELGKRDKA 656 (772)
T ss_pred cccCcchhhhh-hcccccchhhhhhhHHHHHHHHhhhccCCHHHhhccceecccccccccccchHHHHHHHhhhCcHHHH
Confidence 11111221110 00000100 13333 3333445667789999999999999999999999999
Q ss_pred HHHHHHHHhccCCccccccCCCcccccccCCCCccccc-cchHHHHHHHHhhee------cCCeeeeCCCCCccccCCee
Q 003209 699 YRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDA-NFGFSAAVAEMLVQS------TVKDLYLLPALPRDKWGSGC 771 (839)
Q Consensus 699 ~~~l~~~l~~~d~~~~~~~~~~~~~nl~~~h~pfqidg-n~g~~agi~emLlqs------~~g~I~llPalP~~~W~~gs 771 (839)
|++++..++ +|++|.. +.+- || +.+.++|+++.++|. ++|.+.+.|.|| +.|+..+
T Consensus 657 ye~~~~~a~-iDL~n~~---~~t~------------dGiHiasm~g~W~aiV~GF~Gl~~~~~~l~~~P~LP-~~W~~l~ 719 (772)
T COG1554 657 YEYFRRAAR-IDLDDVN---GSTD------------DGIHIASMGGIWLAIVQGFAGLRTRDGQLSLAPFLP-DAWTRLK 719 (772)
T ss_pred HHHHHHHHh-ccccccC---CCcc------------chHhHHHHHHhHHHHHhhhcceEeeCCcEeECCCCc-ccccceE
Confidence 999999998 8886642 2222 23 347889999999885 456899999999 9999999
Q ss_pred eecEEeeee-EEEEEEEeCCeEEEEEEEeCCCC
Q 003209 772 VKGLKARGR-VTVNICWKEGDLHEVGLWSKEQN 803 (839)
Q Consensus 772 ~~gLrarG~-~~V~~~w~~g~~~~~~i~s~~~~ 803 (839)
|+ +.+||. +.|++. + ..++++...|+
T Consensus 720 F~-~~~rg~~l~v~v~---~--~~v~~~~~~~~ 746 (772)
T COG1554 720 FP-LNWRGRLLKVDVD---G--AAVTLTLEGGQ 746 (772)
T ss_pred EE-EEEcceEEEEEec---C--cceEEEecCCC
Confidence 98 999986 566652 3 24566666666
No 3
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=100.00 E-value=9.8e-53 Score=443.50 Aligned_cols=231 Identities=42% Similarity=0.726 Sum_probs=195.5
Q ss_pred eEeCCCCCCccccccccCCcccccccCCCcccEEEecccccccCCCCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHh
Q 003209 40 VTFGGPAKHWTDAIPIGNGRLGAMVWGGVASEILQLNEDTLWTGTPGDYTDRKAPEALEEVRKLVDNGKYFAATEAAVKL 119 (839)
Q Consensus 40 lwy~~PA~~W~ealPiGNGrlGamv~G~~~~e~i~lNe~tlWsg~p~~~~~~~~~~~l~~iR~l~~~g~~~~A~~l~~~~ 119 (839)
|||++||+.|+||||||||||||||||++.+|+|+|||+|||+|+|.+..++.+++.|++||+|+++|||.+|++|+++.
T Consensus 1 Lwy~~PA~~W~ealPiGNG~lGamv~G~~~~E~i~lNe~tlWsg~p~~~~~~~~~~~L~~iR~l~~~g~~~~A~~l~~~~ 80 (236)
T PF14498_consen 1 LWYDKPASDWEEALPIGNGRLGAMVYGGPAKERIQLNEDTLWSGGPSDRTPPDAAEYLPEIRELLFEGDYEEAEELAEEN 80 (236)
T ss_dssp EEESS-GCCHHHSEEEESSSEEEEE---SSEEEEEEEETT-BSSSTTSSSSHHHHHHHHHHHHHHHTT-CCHHHHHHCCS
T ss_pred CccCChhhhhhhhcEecCccceEEecCCCCeEEEEEcchheECCCCccccCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999998999999999999999999999999999887
Q ss_pred cC-CCC-CCCccccceEEeccCCCCCCCCCCeEEEEeccccEEEEEEEECCEEEEEEEEEecCCCEEEEEEEeCCCCceE
Q 003209 120 SG-NPS-DVYQPLGDIKLEFDDSHLNYTVPSYRRELDLDTATAKISYSVGDVEFTREHFASNPNQVIASKISGSKSGSLS 197 (839)
Q Consensus 120 ~g-~~~-~~y~plG~L~i~~~~~~~~~~~~~Y~R~LDL~~gv~~v~y~~~g~~~~re~F~S~pd~viv~ri~a~~~~~l~ 197 (839)
+. .+. ++|||+|+|.|++......++ +|+|+|||++|+++|+|+.+|+.|+|++|||+||+|||+||+++++++|+
T Consensus 81 ~~~~~~~~~y~p~g~L~i~~~~~~~~~~--~Y~R~LDl~~a~~~v~~~~~g~~~~re~FaS~pd~viv~r~~~~~~~~l~ 158 (236)
T PF14498_consen 81 FGGEPGYGSYQPLGDLYIDFFPDAGDVS--DYRRELDLETAVATVSYTDGGVRYRREYFASRPDDVIVIRISASKPGGLN 158 (236)
T ss_dssp -B---HH--B---EEEEEEESSSS---C--EEEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEESSTT-EE
T ss_pred ccCCCccccCCcceEEEEEEeCCCCCCC--cEEEEEEccCcEEEEEEEECCEEEEEEEEEECCCCEEEEEEEcCCCCcEE
Confidence 73 343 689999999999543366788 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC--CCCeeecCCCEEEEEEecCCCCCCCCcccCCCCCceEEEEEEEEEEeCCceeEEEecCCeEEEEcCcEE
Q 003209 198 FTVSLDSKL--HHHSQVNSTNQIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRGSIQTLDDKKLKVEGCDWA 275 (839)
Q Consensus 198 ~~l~l~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~l~v~~a~~v 275 (839)
++++|+++. .......+++.|+++|++|. .++++|++.++|+.+| |+|+. .+++|.|++|++|
T Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~l~~~g~~~~------------~~g~~~~~~~~v~~~g--G~v~~-~~~~l~v~~A~~v 223 (236)
T PF14498_consen 159 LTLSLDRPLRTRSAVVTAGGGTLTLRGQAPG------------DNGMRFAGRVRVVATG--GTVTA-DGGGLRVEGADEV 223 (236)
T ss_dssp EEEEEEBSTTSCEEEEEEETTEEEEEEEE-T------------TTS-EEEEEEEEEECC--CECEC-CTTCEEEEEESEE
T ss_pred EEEEecCCcccccceEeecCCEEEEEEEeCC------------CCCeEEEEEEEEEeCC--CEEEe-eCCEEEEeCCCEE
Confidence 999999987 33344456789999999862 3689999999999999 99988 9999999999999
Q ss_pred EEEEEeeecCCC
Q 003209 276 VLLLVASSSFDG 287 (839)
Q Consensus 276 ~l~~~~~T~~~~ 287 (839)
+|++++.|+|++
T Consensus 224 ~l~~~~~T~y~~ 235 (236)
T PF14498_consen 224 TLYVSAATDYRG 235 (236)
T ss_dssp EEEEEEEESEET
T ss_pred EEEEEEEecCCC
Confidence 999999999974
No 4
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=100.00 E-value=1.6e-37 Score=344.34 Aligned_cols=320 Identities=18% Similarity=0.170 Sum_probs=209.3
Q ss_pred HHhHHhhhcC-CCC---CCCC-CCccccCCCCCCCCCCccccccccccccccccCCCchhhhHHHHHHHHHHhHHHHHHH
Q 003209 391 FGRYLLISCS-RPG---TQVA-NLQGIWNKDIEPPWDAAQHLNINLQMNYWPSLPCNLRECQEPLFDYLSSLSVNGSKTA 465 (839)
Q Consensus 391 ~grYlLisss-R~g---~~P~-~LqGiWn~~~~~~W~g~yh~niN~qm~ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A 465 (839)
|+.|+|.++. +.+ ++|+ +|+|. .|.|++ .|++|+.+.|++....||.++.|++||.++|+.||++|
T Consensus 2 ~~lfhL~~~~~~~~~~~~i~a~GLsge-------~Y~Gh~--FWDtE~~~~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A 72 (370)
T PF03632_consen 2 FNLFHLLQSAPRHDSRLSIGAKGLSGE-------GYKGHV--FWDTEIFMLPFFLLTHPEAARSLLNYRYRTLPQARENA 72 (370)
T ss_dssp HHHHHHHHH--SS-TT----TTTTS-S-------TTTTSB---THHHHCHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHH
T ss_pred cHHHHHHHhcCCCCCCCCcCCCCCCCC-------CcCCee--eecchHHhcchHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 322 2444 77774 788965 56799999999999999999999999999999999999
Q ss_pred HHhcCCCceEEccccCCCCCCCCCCCCCccc--cc-ccCHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceE
Q 003209 466 KVNYEASGYVVHQISDLWAKTSPDRGQAVWA--MW-PMGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLI 542 (839)
Q Consensus 466 ~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~--~w-~~~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~ 542 (839)
++ +|++|++|||.|...|... +..|. .. ..-+++||+++|+||..|+|.+||+++++|||+|+|+||.+++.
T Consensus 73 ~~-~g~~GA~yPWeS~~~G~E~----t~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~ 147 (370)
T PF03632_consen 73 RE-YGYKGAMYPWESARTGEEC----TGPWPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVE 147 (370)
T ss_dssp HC-TT--S----SSBSS-SSB--------HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-E
T ss_pred HH-cCCCcceeecccccCcccc----CCCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheE
Confidence 99 8999999998776544211 11121 11 12379999999999999999999999999999999999999999
Q ss_pred EcC-CCeEEECCCCCC-CCcccCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHhcCCC
Q 003209 543 EVP-GGYLETNPSTSP-EHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEIL-----GRNEDALIKRVLEAQPRLL 615 (839)
Q Consensus 543 ~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~L-----g~d~~~~~~~w~~~~~~L~ 615 (839)
+++ +|+|+|..+++| |++. .++|++|||.|+++.|+.++++++.+ +++ +++.++|++++++|.
T Consensus 148 ~~~~~g~y~i~~V~GPDEY~~---------~V~NnayTN~ma~~~L~~A~~~~~~~~~~~l~~~-~~e~~~W~~ia~~i~ 217 (370)
T PF03632_consen 148 YNEDTGRYEIRNVTGPDEYHE---------NVDNNAYTNAMAKWNLRLAAEAAERLGEEKLGLT-EEEPEKWKEIADKIY 217 (370)
T ss_dssp EETTTTEEE--SB--SSTTS----------SBS--HHHHHHHHHHHHHHHHHHTTS-HHHHT---HHHHHHHHHHHHTB-
T ss_pred EcCCCCeEEecccCchhcccC---------CCCCcHHHHHHHHHHHHHHHHHHHHCchhhcCCC-HHHHHHHHHHHhcCC
Confidence 998 599999999999 8763 58999999999999999999998655 455 678999999999999
Q ss_pred CCCCCCCCce---------eeecccCCCCCCCCC-----ccc------------cccccCCCCCCCCCCCHHHHHHHHHH
Q 003209 616 PTRIARDGSI---------MEWAQDFQDPDIHHR-----HLS------------HLFGLYPGHTITVDKTPDLCKAAENT 669 (839)
Q Consensus 616 p~~i~~~G~l---------~ew~~~~~~~~~~hR-----h~s------------hL~~l~Pg~~i~~~~~p~l~~aa~~t 669 (839)
-+...+.|.+ .+|..+ +...+++ |.. -++.+||... ..+++.+++....
T Consensus 218 lP~d~~~gi~~q~dgy~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~qviKQADvvll~~~l~~---~~~~~~~~~n~~y 292 (370)
T PF03632_consen 218 LPYDEETGIIPQFDGYFDLKEWDFS--EKPGDIRLLLHYHPDVIYRSQVIKQADVVLLMYLLPE---EFTEEQKRANLDY 292 (370)
T ss_dssp --EETTTTEE-SSTTGGGS----GG--GS-GGG-HHHCS-HHHHHHSS-BSS-SHHHHHHHTCC---CS-HHHHHHHHHH
T ss_pred cCcCCCCCCCcCCCCcccccCcChh--hcCcccchhhcCCcccccccceecHHHHHHHHHHCCC---CCCHHHHHHHHHH
Confidence 3332333433 233211 1111111 100 1233444321 2467778888889
Q ss_pred hhhcCCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHhccCCccccccCCCcccccccCCCCccccccchHHHHHHHHhh
Q 003209 670 LHKRGEEGPGWSTTWKIALWAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAAVAEMLV 749 (839)
Q Consensus 670 l~~Rg~~~sgwS~a~~~~~aARLgd~e~A~~~l~~~l~~~d~~~~~~~~~~~~~nl~~~h~pfqidgn~g~~agi~emLl 749 (839)
++.|+.|++++|.+++++++|++|+.++|+++|++.+. +|+++.. +++.+++ ..++++|+++++|
T Consensus 293 Ye~~T~hdssLS~~i~ai~aa~lg~~~~A~~~f~~s~~-~Dl~~~~---~~~~~G~-----------h~a~~gG~wq~~v 357 (370)
T PF03632_consen 293 YEPRTTHDSSLSWSIHAIVAARLGDSEKAYDYFRKSAR-IDLDNEN---GNTAEGI-----------HLAGMGGFWQAVV 357 (370)
T ss_dssp HGGGB---STTCHHHHHHHHHHTT-HHHHHHHHCCCCT-TTTTTTT---S-GGG--------------GGGGGHHHHHHH
T ss_pred HcCccCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcccC---CCCCcch-----------HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877 6664321 2222221 4578888999998
Q ss_pred eecCC
Q 003209 750 QSTVK 754 (839)
Q Consensus 750 qs~~g 754 (839)
+...|
T Consensus 358 ~Gf~G 362 (370)
T PF03632_consen 358 FGFGG 362 (370)
T ss_dssp TTTT-
T ss_pred hccCc
Confidence 87776
No 5
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.6e-23 Score=225.90 Aligned_cols=374 Identities=15% Similarity=0.156 Sum_probs=240.7
Q ss_pred HHHHHHHhhcCCHH-HHHHHHHHHHHhhhcceeEEEccCCCccccCCCcccCCccccccccCCCCCchHHHHhhccCCCc
Q 003209 303 SLSTLKSTKNLSYS-DLYARHLDDYQSLFHRVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDED 381 (839)
Q Consensus 303 a~~~l~~a~~~~y~-~L~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d 381 (839)
+...|.++.+..-+ +|+..|...|.+||+...+++.++
T Consensus 210 t~~~L~~~LQL~s~g~Ll~~H~QaW~~lW~d~f~~~~~~----------------------------------------- 248 (682)
T KOG4125|consen 210 TNIGLAKMLQLNSKGKLLSSHKQAWYDLWNDAFIEIPSD----------------------------------------- 248 (682)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhccCcH-----------------------------------------
Confidence 33445554444444 899999999999999887765431
Q ss_pred HHHHHHHHHHHhHHhhhcCC-C---CCCCCCC--ccccCCCCCCCCCCccccccccccccccccCCCchhhhHHHHHHHH
Q 003209 382 PALVELLFQFGRYLLISCSR-P---GTQVANL--QGIWNKDIEPPWDAAQHLNINLQMNYWPSLPCNLRECQEPLFDYLS 455 (839)
Q Consensus 382 ~~L~~l~f~~grYlLisssR-~---g~~P~~L--qGiWn~~~~~~W~g~yh~niN~qm~ywpa~~~nlpE~~~pl~~~~~ 455 (839)
..|++ ..+-|.|.|.|+-. + +-+--+| .|+-|+.....+.| |..|++++.+.|+...-.||.++.++.||.
T Consensus 249 L~L~Q-~~r~slfYllS~LPqpk~~n~~~~GLSP~GLsnG~~E~~Y~G--HvFWD~diWM~P~il~F~p~~A~~~L~YR~ 325 (682)
T KOG4125|consen 249 LLLEQ-TARSSLFYLLSNLPQPKDYNVSSDGLSPVGLSNGLSEDSYGG--HVFWDADIWMEPALLPFFPNVAQNMLNYRN 325 (682)
T ss_pred HHHHH-HHhhhhhhHhhcCCCcCCCCccccCcCcccccCCcchhhcCC--ceeecchhhhhhhhhhcCHHHHHHHHHhhh
Confidence 11221 22344444455542 1 1111122 45555554456666 456778888899999999999999999999
Q ss_pred HHhHHHHHHHHHhcCCCceEEccccCCCCCC--CCC-CCCCcccccccCHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHH
Q 003209 456 SLSVNGSKTAKVNYEASGYVVHQISDLWAKT--SPD-RGQAVWAMWPMGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEG 532 (839)
Q Consensus 456 ~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~--~p~-~~~~~~~~w~~~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e 532 (839)
+.|+.|+.+|.. +|++|+.+||.+--.|.. .|. ....+++ -+..++.++=-||.-|.|.+|++-.+||+++.
T Consensus 326 RtL~~Ak~nA~~-~GY~GA~FpWESA~~G~EV~~e~~~~~QE~H----in~dv~~Af~~y~h~~~D~e~~~~t~Wpi~~~ 400 (682)
T KOG4125|consen 326 RTLSQAKLNAEK-YGYPGAIFPWESAKYGNEVSTEGPCVDQEYH----INVDVAMAFSIYLHEGIDDEYLRYTTWPIIKN 400 (682)
T ss_pred hhHHHHHhhHHh-cCCCCccccccccccccccCCCCCceeEEEE----ecHHHHHHHHHHHHhccchhhhccCCchhHHH
Confidence 999999999999 899999999765444321 110 1112222 25688888888999999999999999999999
Q ss_pred HHHHHHhceEEcC-CCeEEECCCCCC-CCcccCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003209 533 CTLFLLDWLIEVP-GGYLETNPSTSP-EHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEA 610 (839)
Q Consensus 533 ~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~ 610 (839)
+|+||.+++.+++ .+.||+..+++| |+++ .++|+.|||+.++-+|+-+..+|+.||.. ...+|.++
T Consensus 401 VA~F~~SRv~~~~s~~~yHL~nVM~PDE~H~---------~VNn~VYTNa~~k~~L~FA~~LA~hlG~~---~~~kW~eV 468 (682)
T KOG4125|consen 401 VAQFFTSRVKYNSSLGLYHLYNVMDPDEFHN---------HVNNGVYTNAGIKTLLKFATDLANHLGEV---VDPKWSEV 468 (682)
T ss_pred HHHHhhheeEecCccceeeeeccCCchhccc---------ccccchhhhHHHHHHHHHHHHHHHhhCCc---cChhHHHh
Confidence 9999999999998 899999999999 8774 47899999999999999999999999965 56789999
Q ss_pred hcCCC-CCCCCCCCceeeecccCCCCCCCCCccccccccCCCCCCCCCCCHHHHHHHHHHhhhcCC-CCCChhHHHHHHH
Q 003209 611 QPRLL-PTRIARDGSIMEWAQDFQDPDIHHRHLSHLFGLYPGHTITVDKTPDLCKAAENTLHKRGE-EGPGWSTTWKIAL 688 (839)
Q Consensus 611 ~~~L~-p~~i~~~G~l~ew~~~~~~~~~~hRh~shL~~l~Pg~~i~~~~~p~l~~aa~~tl~~Rg~-~~sgwS~a~~~~~ 688 (839)
.++|. |..+..+ .-.|..--....+...-.. ....||.+-|.. .....- .+.+..|+. .+.....+..+..
T Consensus 469 sD~i~iprDvs~N-~HPey~g~V~~~~ikqad~--~l~~ypl~~~~~---~s~~nd-l~~y~~~~~~sgpamt~~~f~a~ 541 (682)
T KOG4125|consen 469 SDDIYIPRDVSSN-IHPEYSGMVSSVEIKQADV--TLMVYPLGYIND---ESILND-LYYYSERQSASGPAMTYPVFVAA 541 (682)
T ss_pred ccCceeccccccc-cChhhccccchhhhhhcce--EEEecccccccc---hhhhhh-hhhhhhcccccCCccccHHHHHH
Confidence 99998 5444321 1111110000001111111 234588775542 222111 122223322 2333223334566
Q ss_pred HHhcCChhHHHHHHHHHHhc-cCCccccccCCCcccccccCCCCccccccchHHHHHHHHh
Q 003209 689 WAHLRNSEHAYRMVKHLFDL-VDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAAVAEML 748 (839)
Q Consensus 689 aARLgd~e~A~~~l~~~l~~-~d~~~~~~~~~~~~~nl~~~h~pfqidgn~g~~agi~emL 748 (839)
+||+-+.-.|-++|.+...+ ++..-.. -+-.+|.+ +.|.|-+.||.|++.+|.--+
T Consensus 542 ~~~~l~~~~~~~y~~~~~~~y~r~~f~~---~se~~~g~-~~~a~flt~~ggflq~~~fg~ 598 (682)
T KOG4125|consen 542 AAGLLNHGSSSSYLYKSVLPYLRAPFAQ---FSEQSNGL-TQPAFFLTANGGFLQSILFGL 598 (682)
T ss_pred HHhhhcccchhHHHHhcchhhccchhhh---hccCCCCC-CCcceeeecccHHHHHHHhcc
Confidence 77776666777777665442 1111100 01113322 234456888888887776554
No 6
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.32 E-value=0.0015 Score=78.84 Aligned_cols=232 Identities=17% Similarity=0.247 Sum_probs=132.2
Q ss_pred cccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCCcccccccCHHHHHHHHHHHHHhc
Q 003209 437 PSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTHLWEHYTYT 516 (839)
Q Consensus 437 pa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~lw~~Y~~T 516 (839)
.....+.+|.++.+|+|+.+... ..|...|. ..+-|...| ..|..-.-..+.....+|+||++|
T Consensus 306 Al~~~G~~~~a~~~l~~l~~~q~-----------~~G~~~~~-~~~dG~~~~----~~~~~Q~D~~g~~l~al~~y~~~t 369 (616)
T TIGR01577 306 ALDRAGYHDRVDRFFRWAMQTQS-----------RDGSWQQR-YYLNGRLAP----LQWGLQIDETGSILWAMDQHYRLT 369 (616)
T ss_pred HHHHCCCHHHHHHHHHHHHHhhC-----------cCCCcceE-EecCCCCCC----CCCCccccchhHHHHHHHHHHHHH
Confidence 34457799999999999876532 24443332 111121111 001111111233444788999999
Q ss_pred CCHHHHHhhhHHHHHHHHHHHHhceEEcCCCeEEECCCCCC-CCcccCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHH
Q 003209 517 MDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSP-EHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEI 595 (839)
Q Consensus 517 gD~~fL~~~~yp~l~e~A~F~~~~l~~~~~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~ 595 (839)
+|.+|++ ..||.++.+++|...+.. +++ ..|+.+. |.. .| -.+++++++...|..++++++.
T Consensus 370 ~d~~~~~-~~~~~v~~a~~fl~~~~~--~~l---~~~~~~lWEer----~G-------~~~~t~a~~~aAL~~aa~lA~~ 432 (616)
T TIGR01577 370 NDRAFLE-EIWESVQKAAQYLILFID--PET---PLPCRDLWEER----EG-------VFTYTASAVYGGLDAAAAVADK 432 (616)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHhcc--CCC---CCCCCccceec----CC-------ccCccHHHHHHHHHHHHHHHHH
Confidence 9999996 589999999999998642 211 1133222 211 11 1478899999999999999999
Q ss_pred hCCCcHHHHHHHHHHhcCCCC-C---CCCCC-CceeeecccCCCCCCCCCcccccccc-CCCCCCCCCCCHHH---HHHH
Q 003209 596 LGRNEDALIKRVLEAQPRLLP-T---RIARD-GSIMEWAQDFQDPDIHHRHLSHLFGL-YPGHTITVDKTPDL---CKAA 666 (839)
Q Consensus 596 Lg~d~~~~~~~w~~~~~~L~p-~---~i~~~-G~l~ew~~~~~~~~~~hRh~shL~~l-~Pg~~i~~~~~p~l---~~aa 666 (839)
+|.+ +..++|++.+++|.. . -.+++ |.......+ ...+ ..--.| |+.+ .|...+.+ .+|.. .+++
T Consensus 433 lGd~--~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~-~~~~-~~vDaS-lL~l~~~~g~l~~-~Dpr~v~Tv~~I 506 (616)
T TIGR01577 433 LGEK--RLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKL-MVLD-KTIDIS-ILGISVPFNLIAP-DDERMVKMAEAI 506 (616)
T ss_pred cCCh--HHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecC-CCCC-CcccHH-HHhHHHhcCCCCC-CChHHHHHHHHH
Confidence 9864 356778777777652 1 11122 222211110 0000 111222 4444 46676766 45544 3444
Q ss_pred HHHhhh-------c--CC---CCCCh--hHHHHHHHHHhcCChh-------------HHHHHHHHHHh
Q 003209 667 ENTLHK-------R--GE---EGPGW--STTWKIALWAHLRNSE-------------HAYRMVKHLFD 707 (839)
Q Consensus 667 ~~tl~~-------R--g~---~~sgw--S~a~~~~~aARLgd~e-------------~A~~~l~~~l~ 707 (839)
.+.|.. | ++ ++..| +..|.+...+++|+.+ +|.++|..++.
T Consensus 507 ~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~ 574 (616)
T TIGR01577 507 EKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMD 574 (616)
T ss_pred HHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHh
Confidence 444431 1 11 23444 4567777788888775 88888888877
No 7
>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65.
Probab=98.27 E-value=4.2e-05 Score=90.15 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=97.3
Q ss_pred EEeccccEEEEEEEE----CCEEEEEEEEEecCC-CEEEEEEEeCCCCceEEEEEecCCCCCC------ee--ecC--CC
Q 003209 152 ELDLDTATAKISYSV----GDVEFTREHFASNPN-QVIASKISGSKSGSLSFTVSLDSKLHHH------SQ--VNS--TN 216 (839)
Q Consensus 152 ~LDL~~gv~~v~y~~----~g~~~~re~F~S~pd-~viv~ri~a~~~~~l~~~l~l~~~~~~~------~~--~~~--~~ 216 (839)
-+|+.+|.++.-... +++.++-+++|++-- +|+|.+|+-+.|....+++.+..+.... .. ..+ .+
T Consensus 136 vv~fr~G~V~~~qC~~~~~~cv~Vs~~~YAHRTrPnLLVQeI~ItNP~~~~vtv~Ls~~~~~~~~~~~~~~~~~~~~~~e 215 (604)
T PF10222_consen 136 VVDFRNGIVHRVQCFKSERDCVCVSQQYYAHRTRPNLLVQEIQITNPTNRDVTVELSSPRSSNWPNSFSSSIEKVSDSHE 215 (604)
T ss_pred EEEEecCeEEEEEEEeecCCceEEEEEEEEecccCcEEEEEEEEECCCCCcEEEEEeCCCCCCccccceeEEEEecCCcc
Confidence 488999999764333 578899999999975 5888777777665555555554433211 11 111 13
Q ss_pred EEEEEEecCCCCCCCCcccCCCCCceEEEEEEEEEEeCCceeEEEecCCeEEEEcCcEEEE--EEEeeecCCCCCCCCCC
Q 003209 217 QIIMQGSCPDKRPSPKVMVNDNPKGVQFTAILDLQISESRGSIQTLDDKKLKVEGCDWAVL--LLVASSSFDGPFTKPSD 294 (839)
Q Consensus 217 ~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~l~v~~a~~v~l--~~~~~T~~~~~~~~~~~ 294 (839)
....+|..+.. .++ .-+.+.|+... -.++|.|++-++..+ +.++.+|-.-.-.+...
T Consensus 216 ~~v~sG~V~~~-----------~~~--~~i~VaVv~~k--------lP~~iqV~~ks~~~~~~ltvV~yS~Pi~~~~~~~ 274 (604)
T PF10222_consen 216 YQVSSGKVPPP-----------EDS--KVIVVAVVTKK--------LPSTIQVKAKSETKLTFLTVVNYSEPIDESKYKE 274 (604)
T ss_pred EEEEEEEEcCC-----------CCC--cEEEEEEEeCC--------CCCCEEECCCceEEEEEEEEEEEeccccchhhhh
Confidence 34566666431 111 11223333332 467788877666544 44554543210000000
Q ss_pred CCCChHHHHHHHHHHhhc--CCHHHHHHHHHHHHHhhhcceeEEEccC
Q 003209 295 SEKDPTSESLSTLKSTKN--LSYSDLYARHLDDYQSLFHRVSLQLSKS 340 (839)
Q Consensus 295 ~~~~~~~~a~~~l~~a~~--~~y~~L~~~H~~~w~~lw~r~~i~L~~~ 340 (839)
..+...+.|.+.+.++.. .+.+.|+++|++.|++||. +.+.++.+
T Consensus 275 ~~~~l~~~a~~em~~ll~~~~~~~~L~~eH~~aW~~Lw~-SG~~Is~s 321 (604)
T PF10222_consen 275 TFEALEEQAKKEMKELLQSGMSVEDLLQEHVDAWSDLWS-SGFEISKS 321 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh-cccccccc
Confidence 011123456667777766 7999999999999999998 66776654
No 8
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=97.94 E-value=2.8e-05 Score=91.57 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEE--cCCCeEEECCCCC-CCCcccCCCCCCcccccCcHHH
Q 003209 502 GAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIE--VPGGYLETNPSTS-PEHMFVAPDGKQASVSYSSTMD 578 (839)
Q Consensus 502 ~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~--~~~G~~~~~ps~s-PE~~~~~~~g~~~~~~~n~t~d 578 (839)
+.+....+|+||+||||++||+ +.||.|+...+|+..+... .......+. ... |+... ...+...+..
T Consensus 206 ~l~~i~~~~~~y~~tGD~~~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-DW~~~~~~~-------~~~~~~~~~~ 276 (509)
T PF05592_consen 206 SLAWIIIPWDYYLYTGDREFLE-EYYPAMKRYLDYLERRVDDGLDGLPGWGFG-DWLAPGNDG-------DGPTPGATIT 276 (509)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHH-HHHHHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT----------SCCEEHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHhCCccccCCCCCcee-ecCCccCcc-------cccchHHHHH
Confidence 4566778999999999999997 6899999999999987643 000001111 111 11110 1224566778
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCCC-CC----CCCCCceeeecccCCCCCCCCCcccc----ccccC
Q 003209 579 ISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLLP-TR----IARDGSIMEWAQDFQDPDIHHRHLSH----LFGLY 649 (839)
Q Consensus 579 ~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L~p-~~----i~~~G~l~ew~~~~~~~~~~hRh~sh----L~~l~ 649 (839)
+++....|+.+.++++.||.+ +..++|++.+++|.. +. -.+.|.. .+....+. ++++.
T Consensus 277 ~~~~~~~l~~~a~lA~~lg~~--~~a~~y~~~a~~lk~a~~~~~~d~~~g~~-----------~~~sq~~~alAl~~gl~ 343 (509)
T PF05592_consen 277 NALYYYALRAAAELAEALGKD--EDAAEYRARAERLKAAINRHFWDPEKGGY-----------ADGSQHANALALLFGLV 343 (509)
T ss_dssp HHHHHHHHHHHHHHHHHCT-H--HHHHHHHHHHHHHHHHHHHHCEETTTTEE-----------CTTSHCHHHHCHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHhccCcccCcc-----------cCCchHHHHHHHHhchh
Confidence 999999999999999999965 347778888777752 11 1122200 01111122 23444
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhc----CCC-CCC-hhHHHHHHHHHhcCChhHHHHHHHHHHhc-----cCCccccccC
Q 003209 650 PGHTITVDKTPDLCKAAENTLHKR----GEE-GPG-WSTTWKIALWAHLRNSEHAYRMVKHLFDL-----VDPDLEAKFE 718 (839)
Q Consensus 650 Pg~~i~~~~~p~l~~aa~~tl~~R----g~~-~sg-wS~a~~~~~aARLgd~e~A~~~l~~~l~~-----~d~~~~~~~~ 718 (839)
|.. +..+++.+.|..+ +.+ ..| ....+..-..++.|..+.|++++.+...+ ++. +
T Consensus 344 p~~--------~~~~~~~~~l~~~~~~~~~~~~~g~~g~~~~~~~L~~~g~~~~a~~~~~~~~~~~w~~ml~~------g 409 (509)
T PF05592_consen 344 PEE--------ERAAAALKRLAKRIAANGYHLSTGFIGSPYLLEALFRAGRADGAYDLLTQRDYPSWGYMLDQ------G 409 (509)
T ss_dssp -HH--------HHTCHCHCHCHHCCHCCCHS--TCCC-CHHHHHHHHHCCHHCCHHHHHHHHHHHHCHHHHCT------T
T ss_pred hhh--------hhHHHHHHHHHHHHHhcCCCcCcccccHHHHHHHHHHcCCHHHHHHHHHhccccchhHHHhC------C
Confidence 422 1112333333322 211 111 12233344457889999999999764321 221 1
Q ss_pred CCcccccccC--CCCccccccchHHHHHHHHhheecC---------CeeeeCCCCCccccC--CeeeecEEeeeeEEEEE
Q 003209 719 GGLYSNLFTA--HPPFQIDANFGFSAAVAEMLVQSTV---------KDLYLLPALPRDKWG--SGCVKGLKARGRVTVNI 785 (839)
Q Consensus 719 ~~~~~nl~~~--h~pfqidgn~g~~agi~emLlqs~~---------g~I~llPalP~~~W~--~gs~~gLrarG~~~V~~ 785 (839)
..+..-.|+. ..+..---|++..+++..-|.+.-- ..+++-|.+| .... ++++. ..+|.+.|+.
T Consensus 410 ~tT~wE~w~~~~~~~~~~S~~H~w~~~p~~~l~~~v~GI~p~~pG~~~~~i~P~~~-~~L~~~~~~~~--T~~G~I~v~w 486 (509)
T PF05592_consen 410 ATTLWEYWDGDGGDPPNRSLCHAWSAGPTYWLYRYVLGIRPTEPGFKEFRIAPQPP-GDLTWAEGTVP--TPYGEISVSW 486 (509)
T ss_dssp -SS--SS-STT-TCTT-S-SSBGGG-THHHHHHHCTS-EEESSGGGSEEEE------TT-SEEEEEEE--ETTCEEEEEE
T ss_pred CCEEEEecCccCCCCCCCCCCCCcchhHHHHHHHHhhceEeCCCCCcEEEEEEecC-CCCcEEEEEEE--CCCceEEEEE
Confidence 1222223332 2223334477888888877755322 3689999997 5544 44443 3456566666
Q ss_pred EEeCCeEEEEEEEeCCCCcE
Q 003209 786 CWKEGDLHEVGLWSKEQNSV 805 (839)
Q Consensus 786 ~w~~g~~~~~~i~s~~~~~~ 805 (839)
+.++|+ .+++|+.-.|.+.
T Consensus 487 ~~~~g~-~~l~v~vP~~t~a 505 (509)
T PF05592_consen 487 KREDGK-LTLEVTVPAGTTA 505 (509)
T ss_dssp EEETTE-EEEEEEEETTSEE
T ss_pred EEeCCE-EEEEEEeCCCCEE
Confidence 666777 4677776666555
No 9
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=97.10 E-value=0.027 Score=63.98 Aligned_cols=241 Identities=22% Similarity=0.243 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceE----EcC-CCeEEECCCCCCCCcccC--CCCCCccccc
Q 003209 501 GGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLI----EVP-GGYLETNPSTSPEHMFVA--PDGKQASVSY 573 (839)
Q Consensus 501 ~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~----~~~-~G~~~~~ps~sPE~~~~~--~~g~~~~~~~ 573 (839)
...|....+.+|+++|+|.+||+ +.+|.|+++.+.+.+... .++ +| +.....-..-..+.+ .+|.....-.
T Consensus 85 at~wfl~~l~~Y~~~t~D~~~l~-~~~~~i~~il~~~~~g~~~~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~ 162 (370)
T PF06202_consen 85 ATLWFLIALQEYYRWTGDYSFLR-ELYPAIEEILEWYADGTDFGIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRD 162 (370)
T ss_pred cHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhCCCCccccccCCC-eeecCCCCCCCCccccccCCccccCCC
Confidence 35799999999999999999996 689999999999876432 232 44 333322111112221 1111111111
Q ss_pred CcH-HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCCC-----CCCCCCCceeeecccCCCCCCCCCccccccc
Q 003209 574 SST-MDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLLP-----TRIARDGSIMEWAQDFQDPDIHHRHLSHLFG 647 (839)
Q Consensus 574 n~t-~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L~p-----~~i~~~G~l~ew~~~~~~~~~~hRh~shL~~ 647 (839)
+.. --|+++...++.+.++++..+.+ ...+|++.+++|.. +-..+.|.+..........+..-|.. +++.
T Consensus 163 g~~vEIqal~y~AL~~~~~la~~~~~~---~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~~~d~~irpN-~~~a 238 (370)
T PF06202_consen 163 GAAVEIQALWYNALRFAAELAEKFGDE---LAARYREWAERLKESFEKRFWDEDRGYYADALDGDKEPDDSIRPN-QLIA 238 (370)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcCCc---hHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCCCCCcccccC-chhH
Confidence 222 33567777788888877765533 45667777666651 22233444443322211223333332 2222
Q ss_pred c-CCCCCCCCCCCHHHHHHHH---------HHhhhc-----C-------------CCCCCh--hHHHHHHHHHhcCC-hh
Q 003209 648 L-YPGHTITVDKTPDLCKAAE---------NTLHKR-----G-------------EEGPGW--STTWKIALWAHLRN-SE 696 (839)
Q Consensus 648 l-~Pg~~i~~~~~p~l~~aa~---------~tl~~R-----g-------------~~~sgw--S~a~~~~~aARLgd-~e 696 (839)
+ .|...++.+....+.+.+. +||... + ..+|-| -.++.+.-.+|+|. .+
T Consensus 239 ~~L~~~~l~~~~a~~vl~~~~~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~~~ 318 (370)
T PF06202_consen 239 LSLPPGLLDPEQAKKVLDRVEEELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFDEE 318 (370)
T ss_pred HhcCCccCCHHHHHHHHHHHHHHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCccch
Confidence 1 2334444322222222232 233211 1 123434 45555555678877 46
Q ss_pred HHHHHHHHHHhccCCccccccCCCcccccccCCCCccccccchHHHHHHHHh
Q 003209 697 HAYRMVKHLFDLVDPDLEAKFEGGLYSNLFTAHPPFQIDANFGFSAAVAEML 748 (839)
Q Consensus 697 ~A~~~l~~~l~~~d~~~~~~~~~~~~~nl~~~h~pfqidgn~g~~agi~emL 748 (839)
++.+.++.++..+.. ......-+..|-+|+..||+...|...-+-+++|+|
T Consensus 319 ~~~~~~~~ll~~~~~-~~~~~~~~~lpEl~dg~~~~~p~gc~~QAWS~a~il 369 (370)
T PF06202_consen 319 EAIREAKSLLEGFEE-HLQEFGLGRLPELFDGDPPHYPRGCSPQAWSVAEIL 369 (370)
T ss_pred HHHHHHHHHHHHHHH-HHhhccCCCcchhcCCCCCCCCCCCHHHHHHHHHhh
Confidence 777777666652211 011123456788899888887777766666777664
No 10
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=96.73 E-value=0.0015 Score=73.82 Aligned_cols=168 Identities=18% Similarity=0.250 Sum_probs=51.8
Q ss_pred cccccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcC---------CCceEEcccc----CCCCCCCCCCCCCcccccccC
Q 003209 435 YWPSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYE---------ASGYVVHQIS----DLWAKTSPDRGQAVWAMWPMG 501 (839)
Q Consensus 435 ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG---------~~G~~~~~~t----d~w~~~~p~~~~~~~~~w~~~ 501 (839)
+-+++....|++.+.+..-.......--.+-+. ++ .+|.+-|-.. +||..+... .......|.-.
T Consensus 23 ~s~al~~lfP~Le~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~G~vphdlg~p~~~P~~~~n~y-~~~~~~~~~D~ 100 (365)
T PF04685_consen 23 ASFALLKLFPELERSMQRDFADAILSEDNTERK-ILYDGKIAPRKVRGAVPHDLGSPFDDPWDRTNAY-NYHDVYAWKDL 100 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 556677788999888875554433221111111 12 2365544222 335433210 00011224344
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcCCCeEEECCCCCCCCcccCCCCCCcccccCcHHHHHH
Q 003209 502 GAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSPEHMFVAPDGKQASVSYSSTMDISI 581 (839)
Q Consensus 502 ~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~ 581 (839)
..+....+|.+|..|||.+||+ ..||.++.+.+|...+ ..+.||- +...-.|++.+. .- .+.--++|...+
T Consensus 101 ~~~fVL~vyr~~~~TGD~~fL~-~~wp~v~~a~~~~~~~-D~d~dGl--~e~~g~~D~TyD---~~--~~~G~say~~~L 171 (365)
T PF04685_consen 101 NPKFVLQVYRDYKWTGDRDFLK-EMWPAVKKAMDYLLSW-DRDGDGL--PENPGHPDQTYD---DW--SMYGPSAYCGGL 171 (365)
T ss_dssp -----------------------EHHHHHHHHHHHHHHS-B--TTS---BEEET---SSST---T---EEEEEEHHHHHH
T ss_pred cccccccccccccccccchhhh-hHHHHHHHHHHHHHhh-CCCCCCC--CCCCCCCccccc---cC--CeeCCCHHHHHH
Confidence 6788899999999999999997 5899999999999984 2333663 222223345542 11 122346899999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCC
Q 003209 582 IKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLL 615 (839)
Q Consensus 582 ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L~ 615 (839)
.-..|+.++++++.||. .+..+++++.++++.
T Consensus 172 ~laAL~A~~emA~~lgd--~~~a~~y~~~~~~~~ 203 (365)
T PF04685_consen 172 WLAALRAAAEMAKILGD--PELAAKYRELAEKAK 203 (365)
T ss_dssp HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 99999999999999995 345667777766654
No 11
>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) containing this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. This domain is believed to be essential for catalytic activity [] although its precise function remains unknown.; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=96.63 E-value=0.051 Score=58.36 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=43.0
Q ss_pred CCCCCCCeEEEEeccccEEEEEEEEC-----CEEEEEEEEEecCCC-EEEEE--EEe-CC-CCceEEEEEecCCC
Q 003209 142 LNYTVPSYRRELDLDTATAKISYSVG-----DVEFTREHFASNPNQ-VIASK--ISG-SK-SGSLSFTVSLDSKL 206 (839)
Q Consensus 142 ~~~~~~~Y~R~LDL~~gv~~v~y~~~-----g~~~~re~F~S~pd~-viv~r--i~a-~~-~~~l~~~l~l~~~~ 206 (839)
..+. +|+|.|||++|+++-+|... .+.++-+.|||..+. +++++ |++ +. ++.|.+.-.++...
T Consensus 92 ~~i~--~~~r~LDm~~G~l~r~~~~~~~~G~~~~i~~~rfvS~~~~~l~~~~~~it~l~~~~g~i~i~~~id~~v 164 (255)
T PF03636_consen 92 GEIS--SYRRTLDMRTGILTRSFVWRTPSGRKIKIESERFVSMADPHLAAIRYEITPLNFDDGEITIESGIDGDV 164 (255)
T ss_dssp SEEE--EEEEEEETTTTEEEEEEEEE-ETTEEEEEEEEEEE-SSSTTEEEEEEEEEE-SSS-EEEEE--EEE---
T ss_pred CCcc--ceEEEEEcccEEEEEEEEEEECCCCEEEEEEEEEEcCCCCeEEEEEEEEEECCCCceEEEEEEEeeCCc
Confidence 4577 89999999999998775553 367889999999986 55555 666 33 36788887776643
No 12
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=3.5 Score=51.13 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHH---------HHHH----------HhceEEcCCCeEEECCCCCCCCccc
Q 003209 502 GAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGC---------TLFL----------LDWLIEVPGGYLETNPSTSPEHMFV 562 (839)
Q Consensus 502 ~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~---------A~F~----------~~~l~~~~~G~~~~~ps~sPE~~~~ 562 (839)
-.|+++.+-+|-.-|||..+|.+ ..|++.+= +.-| ..++. +.|...+.. +-=|-..
T Consensus 671 vvWl~~a~~~Yl~~TGD~aILdE-~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r~g--~~glpli~g--GDWND~l 745 (1056)
T COG3459 671 VVWLLKAIADYLKETGDAAILDE-VIPFIDGPALPEFSKEQATLYEHCARALDLAVARLG--PHGLPLILG--GDWNDGL 745 (1056)
T ss_pred eeeeHHHHHHHHHhcCcHhhhhc-cccccCCCccccccccchhHHHHHHHHHHHHHHhcC--CCCcccccC--Ccccccc
Confidence 36999999999999999999965 56666433 3333 32322 123211110 0000000
Q ss_pred CC---CCCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCC
Q 003209 563 AP---DGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLL 615 (839)
Q Consensus 563 ~~---~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L~ 615 (839)
.+ .|+..++ +-=-.+-..|+..+++|+.++.. +...+|++.++.|.
T Consensus 746 n~vg~~g~geSv-----~lgW~l~~tlq~F~~lak~r~d~--~r~~~~~~~~ea~~ 794 (1056)
T COG3459 746 NLVGNGGKGESV-----WLGWFLALTLQTFKELAKARGDE--ARADTWAKHVEALR 794 (1056)
T ss_pred cccccCCcccee-----ehhhHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHH
Confidence 01 1111111 11122344566777888888854 56788888888776
No 13
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=96.12 E-value=0.017 Score=46.83 Aligned_cols=43 Identities=33% Similarity=0.620 Sum_probs=25.3
Q ss_pred CCCCccccCCeeeecEEeeee-EEEEEEEeCCeEEEEEEEeCCCCcEEEEE
Q 003209 760 PALPRDKWGSGCVKGLKARGR-VTVNICWKEGDLHEVGLWSKEQNSVKRIH 809 (839)
Q Consensus 760 PalP~~~W~~gs~~gLrarG~-~~V~~~w~~g~~~~~~i~s~~~~~~~~l~ 809 (839)
|.|| ++|+..+|+ |++||. +.|.+ +..++ ++++.+.. .++ .|.
T Consensus 1 P~LP-~~w~~l~F~-~~~rg~~l~v~i--~~~~v-~v~~~~g~-~~l-~i~ 44 (54)
T PF03633_consen 1 PRLP-KQWSSLSFR-LRYRGHWLEVEI--THEKV-TVTLLSGD-APL-TIK 44 (54)
T ss_dssp -----TT-SEEEEE-EEETTEEEEEEE--ETTEE-EEEEEESS---E-EEE
T ss_pred CcCC-CccCEeEEE-EEECCEEEEEEE--ECCEE-EEEEccCC-ccE-EEE
Confidence 8999 999999998 999998 56666 45553 55555443 466 555
No 14
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.98 E-value=4.5 Score=49.33 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEEEccCCCccccCCCcccCCccccccccCCCCCchHHHHhhccCCC
Q 003209 301 SESLSTLKSTKNLSYSDLYARHLDDYQSLFHRVSLQLSKSSKNTCVDGSLKRDNHASHIKESDHGTVSTAERVKSFQTDE 380 (839)
Q Consensus 301 ~~a~~~l~~a~~~~y~~L~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~ 380 (839)
..|.+.+..+...+|+.++++-.+.|+++-.+.. .+.+
T Consensus 210 ~~a~~~~~~~l~~g~~~~~~~~~~~W~~w~~~~~-~~~~----------------------------------------- 247 (648)
T TIGR01535 210 YEAAKTAVATLKEGYRRVKDAYIDEWEKYLNSLN-NFNG----------------------------------------- 247 (648)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cCCc-----------------------------------------
Confidence 3455666677788999999999999999877641 1111
Q ss_pred cHHHHHHHHHHHhHHh-hhcC--CCCCCCCCCccccCCCCCCCCCCcccccc--ccccccccccCCCchhhhHHHHHHHH
Q 003209 381 DPALVELLFQFGRYLL-ISCS--RPGTQVANLQGIWNKDIEPPWDAAQHLNI--NLQMNYWPSLPCNLRECQEPLFDYLS 455 (839)
Q Consensus 381 d~~L~~l~f~~grYlL-isss--R~g~~P~~LqGiWn~~~~~~W~g~yh~ni--N~qm~ywpa~~~nlpE~~~pl~~~~~ 455 (839)
.+.+++. -+.-.| .... .+|.+-+.++=-|-+...-.=+.+||+=| +.=+.-......+..|.++.+|+|+.
T Consensus 248 --~~~~~~~-rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~ 324 (648)
T TIGR01535 248 --KGNSLYY-VSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDVDSALRSLDYLA 324 (648)
T ss_pred --hHHHHHH-HHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0111222 222222 2222 34665555544444332111113465321 11111122345788999999999998
Q ss_pred HHhHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCCcccccccC-HHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHH
Q 003209 456 SLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAMWPMG-GAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCT 534 (839)
Q Consensus 456 ~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~~-~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A 534 (839)
+.... .|...+ +..+ ++.+.|.--+.. .+.+...+|.+++. +.. ..+++++.+|
T Consensus 325 ~~~~~-----------~G~~lq-~y~v-------dG~~~~~~iQlD~~g~~i~~~~~l~~~--~~~----~~~~~vk~aa 379 (648)
T TIGR01535 325 KVQQD-----------NGMFPQ-NSWV-------DGKPYWTGIQLDETAFPILLAYRLHRY--DHA----FYDKMLKPAA 379 (648)
T ss_pred HHhcc-----------CCCcCc-eecc-------CCCCCCCCccccHHHHHHHHHHHHHHc--CcH----HHHHHHHHHH
Confidence 77541 333221 1111 111222111111 22223333555553 222 2579999999
Q ss_pred HHHHhceEEcCCCeEEECCCCCCCCcccCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCC
Q 003209 535 LFLLDWLIEVPGGYLETNPSTSPEHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRL 614 (839)
Q Consensus 535 ~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L 614 (839)
+|....--....|.. |... | -.+||.+-+--.|..++++++.+|.. + ..++|++.++++
T Consensus 380 dfl~~~~p~p~~d~W--------Eer~----g-------~~~~T~a~v~aaL~~Aa~iA~~~g~~-~-~a~~w~~~Ad~i 438 (648)
T TIGR01535 380 DFIVKNGPKTGQERW--------EEIG----G-------YSPSTLAAEIAGLTAAADIAEQNGDA-G-SAQKYRETADNW 438 (648)
T ss_pred HHHHHcCCCCCCCcc--------cccC----C-------cCchhHHHHHHHHHHHHHHHHHcCCc-H-HHHHHHHHHHHH
Confidence 999885311102222 2221 1 12477777778999999999999975 3 567787766665
Q ss_pred C
Q 003209 615 L 615 (839)
Q Consensus 615 ~ 615 (839)
.
T Consensus 439 ~ 439 (648)
T TIGR01535 439 Q 439 (648)
T ss_pred H
Confidence 3
No 15
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.41 Score=58.09 Aligned_cols=295 Identities=19% Similarity=0.241 Sum_probs=150.4
Q ss_pred CchhhhHHHHHHHHHHhHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCCccccccc-CHHHHHHHHHHHHHhcCCHH
Q 003209 442 NLRECQEPLFDYLSSLSVNGSKTAKVNYEASGYVVHQISDLWAKTSPDRGQAVWAMWPM-GGAWVCTHLWEHYTYTMDKD 520 (839)
Q Consensus 442 nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~-~~awla~~lw~~Y~~TgD~~ 520 (839)
+++|+++..+.++.+.. .+|-.-|+. ....| +.+.|+ +. ...|.+..+-+||.+|+|.+
T Consensus 300 g~~elArg~L~~~a~~~------------~~GkIPhe~----~~~~~--~~~~Y~--tvD~t~~~i~~~~~y~~~t~d~~ 359 (641)
T COG3408 300 GRFELARGTLNTLARYS------------EPGKIPHEI----LLSIP--GEPYYN--TVDATPLFIYLLGAYLKYTGDTE 359 (641)
T ss_pred CCHHHHHHHHHHHHhhc------------cCCCCcchh----hhcCC--Ccceec--cCCCcHHHHHHHHHHHHHhccHH
Confidence 58888888888876662 244443332 00011 222332 11 25699999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhceEEc--CCCeEEECCCCCCCCcccCCCCCCcc-cc-cCcHHHHH-HHHHHHHHHHHHHHH
Q 003209 521 FLKNKAYPLLEGCTLFLLDWLIEV--PGGYLETNPSTSPEHMFVAPDGKQAS-VS-YSSTMDIS-IIKEVFSEIVSAAEI 595 (839)
Q Consensus 521 fL~~~~yp~l~e~A~F~~~~l~~~--~~G~~~~~ps~sPE~~~~~~~g~~~~-~~-~n~t~d~~-~ir~ll~~~~ea~~~ 595 (839)
|++ +.+|.+..+.+.|....-.+ .+|...+.. -++ .++.+....... .. .+...++. +-..+++.+..+++.
T Consensus 360 ~i~-e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~-~~~-~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~l 436 (641)
T COG3408 360 FIR-ELWPSVGAALDWILKGFDFGFDTYGDGLLEG-GSN-QTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANL 436 (641)
T ss_pred HHH-HHHHHHHHHHHHHHhcCCccceecCcccccC-CCC-CCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHH
Confidence 997 58999999988887655321 222222210 000 011110000000 01 23334443 334488888888999
Q ss_pred hCCCcHHHHHHHHHHhcCCCC-CCCCCCCceeeecc-cC-----CCCCCCCCccccccccCCCCCCCCCCCHHHH---HH
Q 003209 596 LGRNEDALIKRVLEAQPRLLP-TRIARDGSIMEWAQ-DF-----QDPDIHHRHLSHLFGLYPGHTITVDKTPDLC---KA 665 (839)
Q Consensus 596 Lg~d~~~~~~~w~~~~~~L~p-~~i~~~G~l~ew~~-~~-----~~~~~~hRh~shL~~l~Pg~~i~~~~~p~l~---~a 665 (839)
|+ + .+..++|++++++|.. +. -..|.. .+ .+.+..-|...-.-+..|...|. +++.+ +.
T Consensus 437 l~-~-~~~~~~~~~~a~~l~~~F~------~~fw~~~~f~dl~~~~~~~~~r~~~~~a~~l~~~gi~---~~~~~~~~~l 505 (641)
T COG3408 437 LG-D-EEDAARLEKIARRLKESFE------AKFWNPTGFYDLALDDKDVPIRPNFSNAIHLLYTGIV---DPERAVIIRL 505 (641)
T ss_pred hc-c-cccHHHHHHHHHHHHHHHH------HHhhCccchHhhhccCCCcccCccceecccccccccC---chHHHHHHHH
Confidence 98 4 5567788888888762 11 111211 01 11122233322111112222342 22222 11
Q ss_pred HH---------HHhhhc-----C---CCCCCh--hHHHHHHHHHhcCChh-HHHHHHHHHHhccCCccccccCCCccccc
Q 003209 666 AE---------NTLHKR-----G---EEGPGW--STTWKIALWAHLRNSE-HAYRMVKHLFDLVDPDLEAKFEGGLYSNL 725 (839)
Q Consensus 666 a~---------~tl~~R-----g---~~~sgw--S~a~~~~~aARLgd~e-~A~~~l~~~l~~~d~~~~~~~~~~~~~nl 725 (839)
+. +||... + ..+|-| -.++.+.-+-|.|..+ ++.+.+..++...+. +..|-+
T Consensus 506 ~e~~lltp~GlRTLS~~dp~Y~p~yYH~GtVWP~~~gifv~g~~r~G~~~~~~~~~~~~~~~~a~~--------~~~pE~ 577 (641)
T COG3408 506 AEEDLLTPWGLRTLSPDDPRYNPMYYHNGTVWPHDTGIFVLGLRRYGLKDIQALELFDGLFSSASP--------GRIPEL 577 (641)
T ss_pred HHHhccCCccccccCCCCCCcCCCcccCCCcccchHHHHHHHHHHcCcccHHHHHHHHHHhhhccc--------CCCccc
Confidence 11 122211 1 123444 4555666678889888 888888888773222 222555
Q ss_pred ccCCCCccccccc--hHHHH-----HHHHhheecCCeeeeCCCCCccccCCeeeecEEeeeeE
Q 003209 726 FTAHPPFQIDANF--GFSAA-----VAEMLVQSTVKDLYLLPALPRDKWGSGCVKGLKARGRV 781 (839)
Q Consensus 726 ~~~h~pfqidgn~--g~~ag-----i~emLlqs~~g~I~llPalP~~~W~~gs~~gLrarG~~ 781 (839)
|+.-.|-..-|++ +-++| +.+++|--..+..++++. | ..|+...++ |+.||..
T Consensus 578 f~g~~~~~P~gc~~QAWS~a~~l~~~~~~~lg~~p~~~~~~~~-p-~~~~~~~~~-~~~~~~~ 637 (641)
T COG3408 578 FDGDSPNRPKGCYPQAWSSAEILRSLLQGLLGIKPDGFRLFKT-P-ESLKIVKLS-LKVRGKL 637 (641)
T ss_pred ccccCCCCCCCcchhhhhHHHHHHHHHHHHhCCCcCcccccCC-C-ccccceEEE-EEeccee
Confidence 5532221112332 22222 333333333333377888 9 999999998 9888763
No 16
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.23 E-value=1 Score=54.41 Aligned_cols=274 Identities=16% Similarity=0.150 Sum_probs=156.0
Q ss_pred CCCCCCCccccCCCCCCCCCC-cccccccccccc--ccccCCCchhhhHHHHHHHHHHhHH-HHHHHHHhcCCCceEEcc
Q 003209 403 GTQVANLQGIWNKDIEPPWDA-AQHLNINLQMNY--WPSLPCNLRECQEPLFDYLSSLSVN-GSKTAKVNYEASGYVVHQ 478 (839)
Q Consensus 403 g~~P~~LqGiWn~~~~~~W~g-~yh~niN~qm~y--wpa~~~nlpE~~~pl~~~~~~~l~~-~r~~A~~~yG~~G~~~~~ 478 (839)
|.+-++....|.+.. ++. ||++-|+=-.+| +.....+..+.++.+|.|+.+.... +. -..+|...|. .
T Consensus 262 G~ivAs~t~~l~~~~---~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~--~~~~y~~~g~---~ 333 (612)
T COG3387 262 GAIVASPTTSLPELI---GGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGK--LYHKYSIDGS---D 333 (612)
T ss_pred CcEEEcCCCCccccC---CCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCc--eeeEEecCCC---c
Confidence 555556666555432 111 365544332333 2334478888899999988776532 22 2223555554 1
Q ss_pred ccCCCCCCCCCCCCCcccccccCHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcCCCeEEECCCCCC-
Q 003209 479 ISDLWAKTSPDRGQAVWAMWPMGGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSP- 557 (839)
Q Consensus 479 ~td~w~~~~p~~~~~~~~~w~~~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~~G~~~~~ps~sP- 557 (839)
-...|.. -. .....+..+....++...+++.|++..+|..+...+...+++..+.|... +.+...+ -..|+.+=
T Consensus 334 ~~~~w~~-~~-~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~~~W 408 (612)
T COG3387 334 LAESWLP-VS-GYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRR-MEKIKAN--LPTPDFDLW 408 (612)
T ss_pred ccccccc-cc-CCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhhhcC--CCCCcccee
Confidence 1112322 00 01112223444578999999999999999999988888999999999988 4332112 12233332
Q ss_pred CCcccCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCCCC--C--CCCC-CceeeecccC
Q 003209 558 EHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLLPT--R--IARD-GSIMEWAQDF 632 (839)
Q Consensus 558 E~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L~p~--~--i~~~-G~l~ew~~~~ 632 (839)
|..+ -.-+|+..+++..|..+.++++.+| + .+..+.|++.+++|.-- . ...+ |... ..+
T Consensus 409 Eer~-----------g~~~yt~~~~~agLd~A~~lA~~~g-d-~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~---r~~ 472 (612)
T COG3387 409 EERG-----------GHFTYTKATVYAGLDAAADLAEEFG-D-KGSAEHWRKTADELKEAVLRRGYAEDGGYFV---RSL 472 (612)
T ss_pred cccC-----------CcccchHHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHhcccccCCeee---hhc
Confidence 3221 1468999999999999999999999 4 55677888877776521 0 1112 2111 111
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCHHH---HHHHHHHhhh------c--C--CCC-------CChhHHHHHHHHHhc
Q 003209 633 QDPDIHHRHLSHLFGLYPGHTITVDKTPDL---CKAAENTLHK------R--G--EEG-------PGWSTTWKIALWAHL 692 (839)
Q Consensus 633 ~~~~~~hRh~shL~~l~Pg~~i~~~~~p~l---~~aa~~tl~~------R--g--~~~-------sgwS~a~~~~~aARL 692 (839)
.. .+..-+-+-|.++.=...|.+ ++|.. .++..+.|.. | + ..+ ..-..-|++-...++
T Consensus 473 ~~-~~~~~vDasll~l~~fg~i~~-~D~~~~~t~~~I~~~L~~~~~gi~RY~~~~~d~~~~~~~~w~i~t~Wl~~~~~~~ 550 (612)
T COG3387 473 GR-KPDDTVDASLLGLVLFGFIPP-DDPRILATVEAIERELLVDGGGIRRYNNEYDDGLGGDNGPWIITTLWLSEYYLAL 550 (612)
T ss_pred CC-CccccccHHHhhccccCccCC-CCHHHHHHHHHHHHHHhhcCCcEEcCccccccccCCCCCcceeehhHHHHHHHHc
Confidence 11 111222222333322345655 56632 2222232221 1 1 111 123457888889999
Q ss_pred CChhHHHHHHHHHHh
Q 003209 693 RNSEHAYRMVKHLFD 707 (839)
Q Consensus 693 gd~e~A~~~l~~~l~ 707 (839)
|+.++|.++|..++.
T Consensus 551 g~~~~a~~ll~~l~~ 565 (612)
T COG3387 551 GRLDEAKKLLEWLLA 565 (612)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999999998887
No 17
>PRK13271 treA trehalase; Provisional
Probab=93.24 E-value=2 Score=51.41 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=53.8
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCC--CceEEccccCCCCCCCCCCCCCcccccccCHHHHHHH
Q 003209 431 LQMNYWPSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEA--SGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTH 508 (839)
Q Consensus 431 ~qm~ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~--~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~ 508 (839)
-||.||-.+-..+.=+...+.+....++++...--.. ||+ +|-..- -.+.+-| ..++.+
T Consensus 158 rE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~~i~~-yG~IPNg~R~Y----Yl~RSQP--------------P~l~~M 218 (569)
T PRK13271 158 REVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDT-WGHIPNGNRSY----YLSRSQP--------------PFFALM 218 (569)
T ss_pred chhhhhHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHH-hCcCcCCchhh----cccCCCC--------------hhHHHH
Confidence 4888887765332222223344444444554444444 664 332211 0122222 478888
Q ss_pred HHHHHHhcCCHHHHHhhhHHHHHHHHHHHHh
Q 003209 509 LWEHYTYTMDKDFLKNKAYPLLEGCTLFLLD 539 (839)
Q Consensus 509 lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~ 539 (839)
+..|++.|+| +||+ +++|.|+.=-+||.+
T Consensus 219 v~~~~~~~~~-~~l~-~~lp~l~kEy~~Wm~ 247 (569)
T PRK13271 219 VELLAQHEGD-AALK-QYLPQMQKEYAYWME 247 (569)
T ss_pred HHHHHhcCcH-HHHH-HHHHHHHHHHHHHhC
Confidence 9999999998 5997 689999988899987
No 18
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=92.34 E-value=8.9 Score=45.16 Aligned_cols=192 Identities=14% Similarity=0.132 Sum_probs=98.2
Q ss_pred HHHHHHHHHhHHhhhcCCCCCCCCCCccccCCCCCCCCCCccccccc--ccccccccc--CCCchhhhHHHHHHHHHHhH
Q 003209 384 LVELLFQFGRYLLISCSRPGTQVANLQGIWNKDIEPPWDAAQHLNIN--LQMNYWPSL--PCNLRECQEPLFDYLSSLSV 459 (839)
Q Consensus 384 L~~l~f~~grYlLisssR~g~~P~~LqGiWn~~~~~~W~g~yh~niN--~qm~ywpa~--~~nlpE~~~pl~~~~~~~l~ 459 (839)
|.-++| -+.|+|-|++= --|.+--|+|-.-.. ++..+ .-+.+...+ ..-.||+.+..+++..+..+
T Consensus 322 lkdal~-n~lyiLts~tW--ld~~G~FaV~E~~~~-------~~y~~tig~~~~~GsfgllllfPeLek~~~~~f~~~i~ 391 (721)
T COG4354 322 LKDALF-NSLYILTSNTW--LDKDGRFAVYECPFY-------TWYESTIGDVRLYGSFGLLLLFPELEKSVMRAFARAIP 391 (721)
T ss_pred HHHHHH-HHHHHHhhccc--ccCCCceEEEecccc-------cchhcccceeEecCCchHHHHhHHHHHHHHHHHHHhcc
Confidence 334566 56688877552 235567777754221 12222 222233322 23458888888877766555
Q ss_pred HHHHHHHHhcCC---------CceEEcccc----CCCCCCCCCCC-CCcccccccCHHHHHHHHHHHHHhcCCHHHHHhh
Q 003209 460 NGSKTAKVNYEA---------SGYVVHQIS----DLWAKTSPDRG-QAVWAMWPMGGAWVCTHLWEHYTYTMDKDFLKNK 525 (839)
Q Consensus 460 ~~r~~A~~~yG~---------~G~~~~~~t----d~w~~~~p~~~-~~~~~~w~~~~awla~~lw~~Y~~TgD~~fL~~~ 525 (839)
..-..- +..|+ ++++ ||-- +.|..+ ..+ ......|.--+..+...++.+|.||+|.+||+ .
T Consensus 392 ~eD~~~-~v~gy~~~~~~~k~~~~t-phDLg~~ehs~e~~--iy~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~-e 466 (721)
T COG4354 392 KEDTEY-RVIGYAFPEAERKKDPAT-PHDLGPNEHSIEKP--IYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLK-E 466 (721)
T ss_pred ccCCce-eeeeeccchhhccCCCCC-CcccCccccchhcc--cccccCCchhhhhcCCcEEeeehhhhhhcccHHHHH-H
Confidence 221111 11222 2222 2211 112211 111 11112455456678889999999999999997 5
Q ss_pred hHHHHHHHHHHHHhceEEcCCCeEEECCCCCCCCcccCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHhCC
Q 003209 526 AYPLLEGCTLFLLDWLIEVPGGYLETNPSTSPEHMFVAPDGKQASVSYSSTMDISIIKEVFSEIVSAAEILGR 598 (839)
Q Consensus 526 ~yp~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~ir~ll~~~~ea~~~Lg~ 598 (839)
.||.++++.+....+ ..+.||- -..+-.|.+.+. +.. +---.+|..+|.-..+..++++++.|+.
T Consensus 467 ~y~~iv~~iD~~~~~-d~d~Dgi--P~~~g~~d~~fD---a~~--i~G~ssy~~sl~iaal~A~l~is~~l~~ 531 (721)
T COG4354 467 VYPVIVEAIDWLKRF-DQDNDGI--PENSGAMDNTFD---ATR--IQGHSSYCGSLFIAALIAALEISKYLLD 531 (721)
T ss_pred HHHHHHHHHHHHHhh-cccCCCC--CcccCCcccccc---cce--eechhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 899999999865433 2233551 001112233321 110 1112356666666667777777777753
No 19
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=90.34 E-value=4 Score=49.04 Aligned_cols=106 Identities=9% Similarity=0.085 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhc---eEE-cCCCeEEECCCCCCCCcccCC-CCCCcccc-c-
Q 003209 501 GGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDW---LIE-VPGGYLETNPSTSPEHMFVAP-DGKQASVS-Y- 573 (839)
Q Consensus 501 ~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~---l~~-~~~G~~~~~ps~sPE~~~~~~-~g~~~~~~-~- 573 (839)
+..|....+.+||++|+|.+|++ +.+|.|+++.+-|.+- .+. |++|-+..+ .+ -.+.+. .|..+..- .
T Consensus 349 AtLWfi~al~~Y~~~tgD~~~l~-~l~p~l~~ii~~y~~G~~~~i~~d~dGLi~~g---~~-lTWMDa~~g~~~~tPR~G 423 (575)
T TIGR01561 349 ASLWAIHAIDKTFAYSQDFLFIR-DVVDKVLDIIDNYCAGNDFAIGMDNDLIFHKG---AP-LTWMDAKVDERAVTPRAG 423 (575)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHhcCCCcEEEECCCccEeCC---CC-CCCCCCCCCCccCCCCCC
Confidence 36799999999999999999996 6899999999877551 111 224432222 11 123221 11111111 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCC
Q 003209 574 SSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPRLL 615 (839)
Q Consensus 574 n~t~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~L~ 615 (839)
-+.--|+++...|+.+.++++.+|.+ + .+|++.+++|.
T Consensus 424 ~~VEInALwYnAL~~~a~la~~~g~~-a---~~y~~~A~~lk 461 (575)
T TIGR01561 424 AACEINALWYNALKTAEFLGNELGED-A---ESLEEKAAGVA 461 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcc-H---HHHHHHHHHHH
Confidence 35677888889999999999999854 3 23544444443
No 20
>PRK10137 alpha-glucosidase; Provisional
Probab=89.74 E-value=63 Score=40.36 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcCCCeE
Q 003209 504 WVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYL 549 (839)
Q Consensus 504 wla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~~G~~ 549 (839)
-.|..+|++|+-|+|++||+ ..||-|...-++|..+--.+.+|..
T Consensus 421 L~a~av~~vy~~t~d~~fl~-~lyPkL~a~h~Ww~~~RD~dg~Gl~ 465 (786)
T PRK10137 421 LAAWSVMEVYNVTQDKAWLA-EMYPKLVAYHDWWLRNRDHNGNGVP 465 (786)
T ss_pred HHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCCCCcee
Confidence 34445688899999999997 6999999999999987644446643
No 21
>PRK13272 treA trehalase; Provisional
Probab=89.47 E-value=13 Score=44.35 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=53.9
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCC--CceEEccccCCCCCCCCCCCCCcccccccCHHHHHHH
Q 003209 431 LQMNYWPSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEA--SGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTH 508 (839)
Q Consensus 431 ~qm~ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~--~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~ 508 (839)
-||.||-.+-..+.=+...+.+....++++...--.. ||+ +|-..-. .+.+-| ..++.+
T Consensus 159 rE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~~i~~-yGfIPNG~R~YY----l~RSQP--------------P~l~~M 219 (542)
T PRK13272 159 REVYYWDSYFTMLGLVKSGQTTLSRQMLDNFAYLIDT-YGHIPNGNRTYY----LSRSQP--------------PFFSYM 219 (542)
T ss_pred cchhhhHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHH-cCcCcCCchhcc----ccCCCc--------------hhHHHH
Confidence 4888887765333222223334444444444444444 664 3332110 122222 478889
Q ss_pred HHHHHHhcCCHHHHHhhhHHHHHHHHHHHHh
Q 003209 509 LWEHYTYTMDKDFLKNKAYPLLEGCTLFLLD 539 (839)
Q Consensus 509 lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~ 539 (839)
+..||+.|+|..| + +.+|.|+.=-.||.+
T Consensus 220 v~~~~~~t~d~~~-~-~~lp~l~kEy~~Wm~ 248 (542)
T PRK13272 220 VELQAGVEGDAAY-Q-RYLPQLQKEYAYWMQ 248 (542)
T ss_pred HHHHHHhcChHHH-H-HHHHHHHHHHHHHcC
Confidence 9999999999987 4 589999988899986
No 22
>PLN02567 alpha,alpha-trehalase
Probab=73.70 E-value=5.6 Score=47.68 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHh
Q 003209 503 AWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLD 539 (839)
Q Consensus 503 awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~ 539 (839)
+-++.+++.+|+.|+|++||+ +.+|.|..==+||..
T Consensus 206 Plla~mV~~~~~~t~d~~~l~-~~lp~L~~E~~~W~~ 241 (554)
T PLN02567 206 PLLSAMVLAVYAATKDVELVR-RALPALLKEHAFWTS 241 (554)
T ss_pred HHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHhc
Confidence 478888999999999999997 689999988899987
No 23
>PRK13270 treF trehalase; Provisional
Probab=73.57 E-value=2.1e+02 Score=34.44 Aligned_cols=286 Identities=14% Similarity=0.142 Sum_probs=137.7
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCC--CceEEccccCCCCCCCCCCCCCcccccccCHHHHHHH
Q 003209 431 LQMNYWPSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEA--SGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTH 508 (839)
Q Consensus 431 ~qm~ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~--~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~ 508 (839)
-||.||-.+-..+.=+...+.+....++++...--.. ||+ +|-..-- .+.+-| ..++.+
T Consensus 170 rE~YYWDSYwi~~GLl~sg~~~~a~~mi~Nf~~li~~-yGfIPNG~R~YY----l~RSQP--------------P~l~~M 230 (549)
T PRK13270 170 SETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIEN-YGHIPNGNRTYY----LSRSQP--------------PVFALM 230 (549)
T ss_pred ccchhhhHHHHHHHhhhcCcHHHHHHHHHHHHHHHHH-cCcCcCCchhcc----ccCCCC--------------HhHHHH
Confidence 3788887765333222223334444444444443344 664 3332110 122222 366777
Q ss_pred HHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhc------------eEEcCCC----eEEECCCCCC--CCccc--------
Q 003209 509 LWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDW------------LIEVPGG----YLETNPSTSP--EHMFV-------- 562 (839)
Q Consensus 509 lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~------------l~~~~~G----~~~~~ps~sP--E~~~~-------- 562 (839)
+..|++ .|.+||+ +.+|.|++=-.||.+- .+.-++| +|.. .+..| |....
T Consensus 231 v~~y~~--~~~~~~~-~~lp~l~~E~~fWm~~~~~~~~~~~~~~~v~~~~g~~L~rY~~-~~~~PRpEsyreD~~~a~~~ 306 (549)
T PRK13270 231 VELFEE--DGVRGAR-RYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWD-DRDTPRDESWLEDVETAKHS 306 (549)
T ss_pred HHHHHh--cCHHHHH-HHHHHHHHHHHHHcCCCCccCcccccceeEecCCCCccccccC-CCCCCCCchhHHHHHhhccc
Confidence 766665 5788997 6899999999999872 2222233 2322 12233 41100
Q ss_pred --------------CCCCCCc---cc------------ccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcC
Q 003209 563 --------------APDGKQA---SV------------SYSSTMDISIIKEVFSEIVSAAEILGRNEDALIKRVLEAQPR 613 (839)
Q Consensus 563 --------------~~~g~~~---~~------------~~n~t~d~~~ir~ll~~~~ea~~~Lg~d~~~~~~~w~~~~~~ 613 (839)
...|-.. .. ..-+.-=|+++....+.+.++++++|.+ +...+|++.+++
T Consensus 307 ~rp~~~~Y~~lra~aESGWDfSsRW~~~~~~L~~i~T~~iipVDLNaiL~~~e~~LA~~a~~lG~~--~~a~~~~~~A~~ 384 (549)
T PRK13270 307 GRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGEK--ETEALFRQKASA 384 (549)
T ss_pred CCchHHHHHHHHHHHHcCCCchhhcccCCcccccccccCcchhhHHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHH
Confidence 0001100 00 1123445678888888888999999864 234455554444
Q ss_pred CC----CCC-CCCCCceeeecccCCCCCCCCCc--cccccccCCCCCCCCCCCHHHHHHHHHHhhhc----CC-------
Q 003209 614 LL----PTR-IARDGSIMEWAQDFQDPDIHHRH--LSHLFGLYPGHTITVDKTPDLCKAAENTLHKR----GE------- 675 (839)
Q Consensus 614 L~----p~~-i~~~G~l~ew~~~~~~~~~~hRh--~shL~~l~Pg~~i~~~~~p~l~~aa~~tl~~R----g~------- 675 (839)
+. -+- -.+.|.-. ||+-....++. .+.+++||=| + .+|+-++.+.+.+..+ |.
T Consensus 385 r~~AI~~~LWnee~G~~~----DYD~~~~~~~~~s~a~f~PLwaG--~---a~~~qa~~l~~~l~~~ll~pGGl~tS~~~ 455 (549)
T PRK13270 385 RRDAVNRYLWDDENGIYR----DYDWRREQLALFSAAAIVPLYVG--M---ANHEQADRLANAVRSRLLTPGGILASEYE 455 (549)
T ss_pred HHHHHHHhccCcccCeEE----ecccccCccccccHHHHHHHHhC--C---CCHHHHHHHHHHHHHhcccCCCcCCCCCC
Confidence 32 110 11233222 23211122222 3344455421 1 2344333333344322 10
Q ss_pred ------CCCChhHHHHHHH--HHhcCChhHHHHHHHHHHhccCCccccccCCCccccc--------ccCCCCccccccch
Q 003209 676 ------EGPGWSTTWKIAL--WAHLRNSEHAYRMVKHLFDLVDPDLEAKFEGGLYSNL--------FTAHPPFQIDANFG 739 (839)
Q Consensus 676 ------~~sgwS~a~~~~~--aARLgd~e~A~~~l~~~l~~~d~~~~~~~~~~~~~nl--------~~~h~pfqidgn~g 739 (839)
.-.+|.+...+++ ..|.|..+.|.++-++.++.+.. .....++.+... .....-|.+...||
T Consensus 456 sgqQWD~PN~WaPlqwmiieGL~ryG~~~lA~~LA~rwl~~~~~--~~~~~g~m~EKYdv~~~~g~~GgGGEY~~q~GFG 533 (549)
T PRK13270 456 TGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQ--FYQEHHKLIEKYHIAGGVPREGGGGEYPLQDGFG 533 (549)
T ss_pred CcccCCCCCCCccHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HHhhcCeeEEEecCCCCCCCCCCCCCcCCCCCcC
Confidence 1237876655544 46788888888887777763210 000011111110 01111233445799
Q ss_pred HHHHHHHHhheec
Q 003209 740 FSAAVAEMLVQST 752 (839)
Q Consensus 740 ~~agi~emLlqs~ 752 (839)
-++||.-.|+..+
T Consensus 534 WTNGV~l~~l~~y 546 (549)
T PRK13270 534 WTNGVVRRLIGLY 546 (549)
T ss_pred cHHHHHHHHHHHh
Confidence 9999998887543
No 24
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=66.60 E-value=4.5 Score=48.05 Aligned_cols=89 Identities=25% Similarity=0.308 Sum_probs=53.3
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHhHHHHHHHHHhcCC--CceEEccccCCCCCCCCCCCCCcccccccCHHHHHHH
Q 003209 431 LQMNYWPSLPCNLRECQEPLFDYLSSLSVNGSKTAKVNYEA--SGYVVHQISDLWAKTSPDRGQAVWAMWPMGGAWVCTH 508 (839)
Q Consensus 431 ~qm~ywpa~~~nlpE~~~pl~~~~~~~l~~~r~~A~~~yG~--~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~ 508 (839)
-||.||-.+-..+.=++.-+.+....++++...--.+ ||+ +|...-. -+.+-| +-++.+
T Consensus 127 ~E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf~~~i~~-yGfipNg~R~Yy----l~RSQP--------------Plla~m 187 (512)
T PF01204_consen 127 REMYYWDSYFIILGLLASGMYETAKGMIENFLYLIDR-YGFIPNGNRTYY----LNRSQP--------------PLLAQM 187 (512)
T ss_dssp -S-BHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-HSS--SBSBGGG----TT---S----------------HHHH
T ss_pred ccchhHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCcCCCCccHHh----ccCCCC--------------chHHHH
Confidence 4899998765333222333334444444554444445 675 4433211 011222 478889
Q ss_pred HHHHHHhcCCHHHHHhhhHHHHHHHHHHHHh
Q 003209 509 LWEHYTYTMDKDFLKNKAYPLLEGCTLFLLD 539 (839)
Q Consensus 509 lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~ 539 (839)
++.+|+.|+|++||+ +.+|.|+.=-+||.+
T Consensus 188 V~~~y~~t~d~~~l~-~~lp~L~ke~~fW~~ 217 (512)
T PF01204_consen 188 VREYYEATKDKAFLR-EALPALEKEYEFWMD 217 (512)
T ss_dssp HHHHHHHHHTCHHHH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCHHHHH-HHHHHHHHHHHHHCC
Confidence 999999999999997 689999999999994
No 25
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=57.11 E-value=21 Score=42.75 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcC
Q 003209 504 WVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVP 545 (839)
Q Consensus 504 wla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~ 545 (839)
.++.++++||+.|+|.+||+ +++|.|..=-.||.+.=.++.
T Consensus 240 llt~Mv~~~y~~t~~~~~~~-~~l~tl~kEy~fw~~~~~~~~ 280 (600)
T KOG0602|consen 240 LLTGMVYEYYEATNDEQFLK-RALPTLIKEYEFWTNNRTEDV 280 (600)
T ss_pred hhhhhHHHhhhccCcHHHHH-HHHHHHhhheecccCCCcccc
Confidence 67778899999999999997 699999888889988766554
No 26
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=56.70 E-value=1.8e+02 Score=38.78 Aligned_cols=30 Identities=17% Similarity=-0.034 Sum_probs=24.7
Q ss_pred CCcccccccCCCCccccccchHHHHHHHHh
Q 003209 719 GGLYSNLFTAHPPFQIDANFGFSAAVAEML 748 (839)
Q Consensus 719 ~~~~~nl~~~h~pfqidgn~g~~agi~emL 748 (839)
-+..|-|++..+||.-+|...-+..++|.|
T Consensus 1429 ~g~l~El~dgdgp~~~~gc~aQAWSvaelL 1458 (1464)
T TIGR01531 1429 WRGLPELTNKDGEYCNDSCPTQAWSVACLL 1458 (1464)
T ss_pred CCCcccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 356788999999999999888777888775
No 27
>TIGR02564 cas_Csy1 CRISPR-associated protein, Csy1 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=56.06 E-value=28 Score=39.68 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=17.2
Q ss_pred ecCCeeeeCCCCCccccCCee
Q 003209 751 STVKDLYLLPALPRDKWGSGC 771 (839)
Q Consensus 751 s~~g~I~llPalP~~~W~~gs 771 (839)
.+.|+.+|||.+| +.|+.-.
T Consensus 217 ~rgG~~yLL~SlP-P~w~~~~ 236 (384)
T TIGR02564 217 SRKGRSYLLPSLP-PVWKNID 236 (384)
T ss_pred hhcCeeeeecCCC-CcCcccc
Confidence 4678999999999 9999743
No 28
>PF09611 Cas_Csy1: CRISPR-associated protein (Cas_Csy1); InterPro: IPR013397 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=50.89 E-value=31 Score=39.37 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=16.3
Q ss_pred cCCeeeeCCCCCccccCCee
Q 003209 752 TVKDLYLLPALPRDKWGSGC 771 (839)
Q Consensus 752 ~~g~I~llPalP~~~W~~gs 771 (839)
+.|+.+|||.|| +.|+.-.
T Consensus 218 rgG~~yLL~SlP-P~~~~~~ 236 (378)
T PF09611_consen 218 RGGKNYLLPSLP-PQWKSRD 236 (378)
T ss_pred cCCeeeccCCCC-CcCcccc
Confidence 678999999999 9998543
No 29
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=35.36 E-value=2.2e+02 Score=34.76 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=43.0
Q ss_pred CCeEEEEcCcEEEEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEE
Q 003209 264 DKKLKVEGCDWAVLLLVASSSFDGPFTKPSDSEKDPTSESLSTLKSTKNLSYSDLYARHLDDYQSLFHRVSLQ 336 (839)
Q Consensus 264 ~~~l~v~~a~~v~l~~~~~T~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~~y~~L~~~H~~~w~~lw~r~~i~ 336 (839)
+..+++.-+-+..+.+..++||.. .+.|++.|++-..-+|+..+++-.++|++...|..|.
T Consensus 253 ~a~l~fd~~a~~ql~vk~A~SfVS------------a~~A~aNLd~Epd~sf~~vr~~t~aaWnnaLsrirVe 313 (768)
T COG3537 253 GAGLTFDFTAGSQLEVKLALSFVS------------ADQARANLDAEPDWSFDRVRAATQAAWNNALSRIRVE 313 (768)
T ss_pred cceEEecCCCCceEEEEeeeeccc------------HHHHhhcCCcCCCccHHHHHHHHHHHHHHHhhheeec
Confidence 344555443334556777889863 2455666655556689999999999999999887775
No 30
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=29.88 E-value=2.8e+02 Score=29.24 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=40.7
Q ss_pred eEEEEeccccEEEEEEEECCEEEEEEEEEecCCCEEEEEEEe-CCCCceEEEEE
Q 003209 149 YRRELDLDTATAKISYSVGDVEFTREHFASNPNQVIASKISG-SKSGSLSFTVS 201 (839)
Q Consensus 149 Y~R~LDL~~gv~~v~y~~~g~~~~re~F~S~pd~viv~ri~a-~~~~~l~~~l~ 201 (839)
|-.+-+++ ..-.-.|..+|+.++++.|..+-.+.++|+++- +.+.++.++|.
T Consensus 75 ~L~~F~~~-~~P~w~y~~~~~~l~k~i~M~~g~Nt~~i~Y~l~~~~~~~~L~l~ 127 (223)
T PF12439_consen 75 YLESFRLE-PLPVWRYRVGDVVLEKRIFMVHGENTTVIRYRLLNGSEPVTLRLR 127 (223)
T ss_pred eeeEEEcC-CCeEEEEEECCEEEEEEEEEECCCCEEEEEEEEccCCCceEEEEE
Confidence 66788888 888899999999999999999999988888763 33344444443
No 31
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=27.72 E-value=2.7e+02 Score=30.94 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=53.8
Q ss_pred HHHHHHhHHHHHHHHHhcC-CCceEEccccCCCCCCCCCCCCCcc--cccccCHHHHHHHHHHHHHhcCCHHHHHhhhHH
Q 003209 452 DYLSSLSVNGSKTAKVNYE-ASGYVVHQISDLWAKTSPDRGQAVW--AMWPMGGAWVCTHLWEHYTYTMDKDFLKNKAYP 528 (839)
Q Consensus 452 ~~~~~~l~~~r~~A~~~yG-~~G~~~~~~td~w~~~~p~~~~~~~--~~w~~~~awla~~lw~~Y~~TgD~~fL~~~~yp 528 (839)
+|+.......+.+.+.+|. -.|..+|..+. .. ...+ .+|.-|.+|.+..+-+-|++..+..--+.....
T Consensus 144 ~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~----~~----~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~ 215 (336)
T PF07470_consen 144 KYLDEAVRQFRLTRKYLYDPETGLYYHGYTY----QG----YADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLE 215 (336)
T ss_dssp HHHHHHHHHHHHHHHHHB-TTTSSBESEEET----TS----SSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCceeeccCC----CC----CcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHH
Confidence 4555555566666666665 47887774321 11 1122 358889999999999999997553333455667
Q ss_pred HHHHHHHHHHhceEEcCCCeE
Q 003209 529 LLEGCTLFLLDWLIEVPGGYL 549 (839)
Q Consensus 529 ~l~e~A~F~~~~l~~~~~G~~ 549 (839)
.+++.+++...+- +++|..
T Consensus 216 ~~~~~~~~l~~~q--~~~G~w 234 (336)
T PF07470_consen 216 IAKKLADALARYQ--DEDGLW 234 (336)
T ss_dssp HHHHHHHHHHTTS--TTTSBE
T ss_pred HHHHHHHHHHhcC--CCCCCc
Confidence 7777777755432 357754
No 32
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=27.52 E-value=1.8e+02 Score=35.68 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcCCCeEEECCCCCCCCcccCCCCCCcccccC-cHHHHHHHHH
Q 003209 506 CTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSPEHMFVAPDGKQASVSYS-STMDISIIKE 584 (839)
Q Consensus 506 a~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n-~t~d~~~ir~ 584 (839)
...+|.-|-.|||+.||+ ..||....+.+..+.| -+|.|| .|-..--|.+.| .++.+.+ ++|==.+.-.
T Consensus 563 VLqvYRD~~~tgd~~flk-~~wpsv~~ime~l~~f-DKD~DG--mIEN~GfpDQTY------D~W~~tGvSAYCGgLWlA 632 (879)
T KOG2119|consen 563 VLQVYRDYVATGDEKFLK-AVWPSVYAIMEYLEQF-DKDNDG--MIENEGFPDQTY------DAWSMTGVSAYCGGLWLA 632 (879)
T ss_pred EEEEEeeeEEeccHHHHH-HHHHHHHHHHHHHHhh-cccCCc--ccccCCCCCccc------cceEEecchhhhhHHHHH
Confidence 445565666799999997 5899999998877766 233366 332222233333 3344444 4777788888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhc
Q 003209 585 VFSEIVSAAEILGRNEDALIKRVLEAQP 612 (839)
Q Consensus 585 ll~~~~ea~~~Lg~d~~~~~~~w~~~~~ 612 (839)
.|+.+++.|.++|.+ ......+++++
T Consensus 633 ALqa~~amA~~~g~~--~~~~~f~~kle 658 (879)
T KOG2119|consen 633 ALQAASAMARQIGDP--NTQDYFNNKLE 658 (879)
T ss_pred HHHHHHHHHHHhCCh--hHHHHHHHHHH
Confidence 999999999999965 23334444444
No 33
>KOG3778 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=2.8e+02 Score=32.32 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHHhhhcceeEEEcc
Q 003209 312 NLSYSDLYARHLDDYQSLFHRVSLQLSK 339 (839)
Q Consensus 312 ~~~y~~L~~~H~~~w~~lw~r~~i~L~~ 339 (839)
.++-.+|+++|..-|.++|.. .+++..
T Consensus 287 ~~~~~~l~qeH~d~W~~l~~t-Gf~~~~ 313 (603)
T KOG3778|consen 287 DMPAAELLQEHQDLWAQLFST-GFEMKK 313 (603)
T ss_pred CCcHHHHHHHHHHHHHHHhcC-ceeEec
Confidence 357889999999999999984 445543
No 34
>PF03550 LolB: Outer membrane lipoprotein LolB; InterPro: IPR004565 This protein, LolB, is known so far only in the gamma subdivision of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.; GO: 0015031 protein transport, 0009279 cell outer membrane; PDB: 1IWM_B 1IWN_A.
Probab=26.68 E-value=2.4e+02 Score=27.91 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=40.3
Q ss_pred ccC-CeeeecEEeee-eEEEEEEEeC-CeEEEEEEEeCCCCcEEEEEeCCeEEEEEccCceEEEEe
Q 003209 766 KWG-SGCVKGLKARG-RVTVNICWKE-GDLHEVGLWSKEQNSVKRIHYRGRTVTANISIGRVYTFN 828 (839)
Q Consensus 766 ~W~-~gs~~gLrarG-~~~V~~~w~~-g~~~~~~i~s~~~~~~~~l~~~~~~~~~~~~~G~~~~~~ 828 (839)
.|. +|+| +++..+ ++...+.|.. +.-..+.|.+--|..+.+|...+..+++....|++|.=.
T Consensus 4 ~w~~~Gr~-av~~~~~~~sa~f~W~q~~~~~~l~L~~PlG~~~~~l~~~~~~~~L~~~~g~~~~a~ 68 (157)
T PF03550_consen 4 QWQLSGRI-AVRTPDQSGSANFNWQQQPDQYRLRLSSPLGQTVARLEGDPQGATLIDSDGQTYQAD 68 (157)
T ss_dssp EEEEEEEE-EEE-SS-EEEEEEEEEEETTEEEEEEE-TTS-EEEEEEEETTEEEEE-TTS-EEEES
T ss_pred ceEEEEEE-EEECCCceEEEEEEEEEcCCccEEEEECCCCccEEEEEECCCEEEEEECCCcEEecC
Confidence 344 4666 466444 3677888863 556789999999988767775566778888899998753
No 35
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.03 E-value=6.1e+02 Score=31.29 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHHHHHhceEEcCCCeEEECCCCCC
Q 003209 501 GGAWVCTHLWEHYTYTMDKDFLKNKAYPLLEGCTLFLLDWLIEVPGGYLETNPSTSP 557 (839)
Q Consensus 501 ~~awla~~lw~~Y~~TgD~~fL~~~~yp~l~e~A~F~~~~l~~~~~G~~~~~ps~sP 557 (839)
.+|+|+..+-+.|+.|||..|.+ +.+++.+|....|...+.|.|..-..-++
T Consensus 274 DnA~l~~~y~~ay~~tgd~~y~~-----~a~~i~~~l~rel~sp~ggFyss~DAD~~ 325 (667)
T COG1331 274 DNALLLRAYAEAYRATGDDLYRR-----AAEGILDYLLRELYSPEGGFYSSLDADSD 325 (667)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHhcCCCCceeecccccCc
Confidence 38999999999999999998884 56788999999987654566654444444
No 36
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=24.92 E-value=1.7e+02 Score=26.47 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=28.5
Q ss_pred eccccEEEEEEEECCEEEEEEEEEecCCCEEE-EEEEeCCCCceEEEEE
Q 003209 154 DLDTATAKISYSVGDVEFTREHFASNPNQVIA-SKISGSKSGSLSFTVS 201 (839)
Q Consensus 154 DL~~gv~~v~y~~~g~~~~re~F~S~pd~viv-~ri~a~~~~~l~~~l~ 201 (839)
++.++.++++| .|+++.+..-+..|+-+.| +.++..++|.+.|++.
T Consensus 24 nI~~~~v~i~~--~gV~i~~v~~~~npNYLFv~L~i~~akpg~~~i~~~ 70 (88)
T PF09087_consen 24 NIASAEVSISY--PGVTIKKVVKTDNPNYLFVYLDISDAKPGTFTINFK 70 (88)
T ss_dssp TGGGSEEEE-B--TTEEEEEEEE-SSTTEEEEEEEE-T--SEEEEEEEE
T ss_pred CcccCEEEEeC--CCeEEEEEEecCCCCEEEEEEecCCCCCcEEEEEEE
Confidence 34455566665 7899988888888887766 5566446777665554
No 37
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=20.08 E-value=3.3e+02 Score=32.45 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=35.7
Q ss_pred EEEEeeecCCCCCCCCCCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHHHHHhhhcceeEE
Q 003209 277 LLLVASSSFDGPFTKPSDSEKDPTSESLSTLK-STKNLSYSDLYARHLDDYQSLFHRVSLQ 336 (839)
Q Consensus 277 l~~~~~T~~~~~~~~~~~~~~~~~~~a~~~l~-~a~~~~y~~L~~~H~~~w~~lw~r~~i~ 336 (839)
|.+.+++||.. .+.|.+.|+ ++...+|++.+++..+.|++..+|+.|+
T Consensus 16 v~vkvgiS~vS------------~e~A~~NL~~E~~~~dFd~v~~~a~~~Wn~~L~rI~V~ 64 (502)
T PF07971_consen 16 VEVKVGISFVS------------VEQARANLEAEIPGWDFDQVRAAARAAWNDALSRIQVE 64 (502)
T ss_dssp EEEEEEEESS-------------HHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEEcccC------------HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCEEEe
Confidence 56777888863 356666665 4557799999999999999999988774
Done!