BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003210
(839 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 73 TSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSD 124
+SDPYVT+ V G RT I + +PVW+++F+ +S+ + V D D
Sbjct: 37 SSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS 96
HG L++ + SAK L + D + DPYV +
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNM---------------DPYVQLTCRTQDQKSNVAEGMG 53
Query: 97 EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSE--LIGTVAIPVEQIYSGGKVEGTYP 152
P W + F V+ E+ + D D VG+E +G IP+E ++ VEG+ P
Sbjct: 54 TTPEWNETFIFTVSEGTTELKAKIFDKD-VGTEDDAVGEATIPLEPVF----VEGSIP 106
>pdb|2LP1|A Chain A, The Solution Nmr Structure Of The Transmembrane C-Terminal
Domain Of The Amyloid Precursor Protein (C99)
Length = 122
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 356 HHQKTVIVDADAGYNRRKIIAF-VGGLDLC-----------DGRYDNPHH---------- 393
HHQK V D G N+ II VGG+ + +Y + HH
Sbjct: 14 HHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVT 73
Query: 394 PLFRTLQTLHKDDYHNPTF 412
P R L + ++ Y NPT+
Sbjct: 74 PEERHLSKMQQNGYENPTY 92
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 74 SDPYVTIAVAGAVVGR------TFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSD-VV 126
SDPYV +++ A R T I + +P W + FY V S + F V D + +
Sbjct: 42 SDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLT 101
Query: 127 GSELIGTVAIPVEQI 141
+ +G V +P+ +
Sbjct: 102 RDDFLGQVDVPLSHL 116
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 690 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMS 749
H KG+ VDD Y++L N+N R+ D E + Y P+ QI +
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421
Query: 750 LWAEHLGYIEDCFGQPETLECVRK 773
L +H +E+ PE ++ + K
Sbjct: 422 L--KHYTELEELNQYPEPVQKLLK 443
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 73 TSDPYVTIAV----AGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFV----KDSD 124
T DPYV I++ + +T + + DP + +HF+ PV + V + S
Sbjct: 46 TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ 105
Query: 125 VVGSELIGTVAIPVEQIYSGGK-VEGTYPVL 154
S LIG + V+ + + K + G Y +L
Sbjct: 106 SRQSGLIGCXSFGVKSLLTPDKEISGWYYLL 136
>pdb|3QEH|A Chain A, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|C Chain C, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|E Chain E, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|G Chain G, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 232
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 162 KPGATLTLSIQYTPMERLSFY----HRGVGEGPDYNGVPG-----TYFPLRKGGKVTLYQ 212
KPGA++T+S + + ++FY + G+G ++ GV TYF + G+VTL +
Sbjct: 13 KPGASVTVSCKTSGYTFVNFYIVWVRQAPGQGLEWMGVINPFRGDTYFAQKFKGRVTLTR 72
Query: 213 D 213
D
Sbjct: 73 D 73
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 75 DPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTV 134
DPY+ + V + +G+T + P W F V + D+ + + +
Sbjct: 39 DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANC 98
Query: 135 AIPVEQIYSGG 145
I E++ G
Sbjct: 99 TIQFEELLQNG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,811,317
Number of Sequences: 62578
Number of extensions: 1266394
Number of successful extensions: 2512
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2511
Number of HSP's gapped (non-prelim): 15
length of query: 839
length of database: 14,973,337
effective HSP length: 107
effective length of query: 732
effective length of database: 8,277,491
effective search space: 6059123412
effective search space used: 6059123412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)