Query 003210
Match_columns 839
No_of_seqs 585 out of 3678
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 4E-181 9E-186 1538.4 71.1 802 29-839 5-868 (868)
2 PLN02270 phospholipase D alpha 100.0 2E-171 3E-176 1462.5 68.9 786 34-839 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 5E-165 1E-169 1408.0 66.5 739 34-839 6-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 7E-147 2E-151 1248.7 55.4 751 27-839 65-853 (887)
5 PLN02866 phospholipase D 100.0 3.4E-97 7E-102 861.8 48.1 531 197-819 321-1060(1068)
6 PRK12452 cardiolipin synthetas 100.0 1.6E-49 3.5E-54 456.1 30.8 335 198-731 132-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.4E-48 3E-53 448.4 31.2 331 198-731 108-440 (483)
8 PRK11263 cardiolipin synthase 100.0 8.2E-47 1.8E-51 421.8 31.1 326 201-731 3-328 (411)
9 COG1502 Cls Phosphatidylserine 100.0 5.7E-36 1.2E-40 343.6 30.0 335 203-730 57-394 (438)
10 PRK09428 pssA phosphatidylseri 100.0 2.1E-34 4.6E-39 323.8 29.2 348 204-731 23-396 (451)
11 PHA02820 phospholipase-D-like 100.0 1.7E-33 3.8E-38 315.9 29.9 324 236-728 26-360 (424)
12 PHA03003 palmytilated EEV memb 100.0 3.4E-33 7.4E-38 310.1 28.9 318 236-730 31-348 (369)
13 cd04015 C2_plant_PLD C2 domain 99.9 3.3E-24 7.1E-29 210.1 16.3 142 33-174 2-158 (158)
14 PF12357 PLD_C: Phospholipase 99.9 1.1E-23 2.4E-28 170.9 4.9 72 759-830 2-73 (74)
15 cd04016 C2_Tollip C2 domain pr 99.9 6.4E-22 1.4E-26 184.2 15.0 118 37-173 1-121 (121)
16 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.1E-20 2.4E-25 177.0 13.4 114 40-169 2-125 (126)
17 cd04013 C2_SynGAP_like C2 doma 99.8 3.3E-20 7.1E-25 177.3 15.1 125 36-180 9-145 (146)
18 cd08682 C2_Rab11-FIP_classI C2 99.8 7.7E-20 1.7E-24 172.8 13.3 117 40-172 1-126 (126)
19 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.9E-19 4.1E-24 168.9 15.0 119 40-175 2-121 (121)
20 PRK05443 polyphosphate kinase; 99.8 9.4E-19 2E-23 205.5 23.9 269 233-730 345-633 (691)
21 cd04019 C2C_MCTP_PRT_plant C2 99.8 9.8E-19 2.1E-23 169.7 14.6 121 40-176 2-134 (150)
22 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.6E-18 3.4E-23 163.7 15.6 120 38-176 4-125 (126)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.2E-18 2.6E-23 163.2 14.4 118 40-173 2-121 (121)
24 cd08681 C2_fungal_Inn1p-like C 99.8 6.8E-19 1.5E-23 164.4 11.7 116 38-173 1-118 (118)
25 TIGR03705 poly_P_kin polyphosp 99.8 5.5E-18 1.2E-22 197.8 21.9 265 234-730 337-624 (672)
26 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.9E-18 8.5E-23 161.4 13.5 120 39-175 1-127 (127)
27 KOG1030 Predicted Ca2+-depende 99.8 2.1E-18 4.6E-23 163.7 10.0 99 34-148 2-101 (168)
28 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.6E-18 1.2E-22 158.7 12.4 112 40-173 2-119 (121)
29 cd08678 C2_C21orf25-like C2 do 99.8 1.2E-17 2.5E-22 157.9 14.3 121 40-177 1-123 (126)
30 cd04044 C2A_Tricalbin-like C2 99.7 1.6E-17 3.4E-22 156.4 13.3 120 38-175 2-124 (124)
31 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.5E-17 5.4E-22 154.0 14.2 118 38-174 1-119 (119)
32 cd04024 C2A_Synaptotagmin-like 99.7 2.8E-17 6E-22 155.7 13.8 120 38-173 1-128 (128)
33 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.7E-17 5.9E-22 154.1 13.2 114 38-173 1-121 (121)
34 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.6E-17 9.9E-22 151.5 13.9 112 40-174 2-115 (116)
35 cd04014 C2_PKC_epsilon C2 doma 99.7 6.4E-17 1.4E-21 154.2 14.9 125 36-175 2-130 (132)
36 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 6E-17 1.3E-21 151.9 14.3 117 40-172 2-120 (121)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 7.2E-17 1.6E-21 151.9 14.1 117 40-172 2-123 (123)
38 cd04046 C2_Calpain C2 domain p 99.7 1.2E-16 2.6E-21 151.0 15.3 122 37-176 2-124 (126)
39 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 8.3E-17 1.8E-21 153.6 13.3 120 39-174 1-133 (133)
40 cd08373 C2A_Ferlin C2 domain f 99.7 1.1E-16 2.3E-21 151.6 13.6 117 44-180 2-122 (127)
41 cd04036 C2_cPLA2 C2 domain pre 99.7 8.3E-17 1.8E-21 150.5 12.4 113 40-173 2-117 (119)
42 cd08395 C2C_Munc13 C2 domain t 99.7 8.1E-17 1.8E-21 149.6 11.7 99 40-154 2-111 (120)
43 cd04050 C2B_Synaptotagmin-like 99.7 9.2E-17 2E-21 146.7 11.1 97 40-154 2-101 (105)
44 cd08375 C2_Intersectin C2 doma 99.7 1.9E-16 4.2E-21 151.3 13.7 115 37-173 14-135 (136)
45 cd08381 C2B_PI3K_class_II C2 d 99.7 9.9E-17 2.1E-21 150.5 10.9 102 36-153 11-121 (122)
46 cd08394 C2A_Munc13 C2 domain f 99.7 2E-16 4.4E-21 146.4 12.4 97 38-154 2-100 (127)
47 cd08688 C2_KIAA0528-like C2 do 99.7 1.2E-16 2.6E-21 147.2 10.7 100 40-155 1-109 (110)
48 cd04028 C2B_RIM1alpha C2 domai 99.7 2.2E-16 4.8E-21 151.5 12.7 107 35-156 26-139 (146)
49 cd08685 C2_RGS-like C2 domain 99.7 8.7E-17 1.9E-21 150.0 9.3 103 35-153 9-119 (119)
50 cd08677 C2A_Synaptotagmin-13 C 99.7 1.5E-16 3.2E-21 145.9 9.9 99 37-153 13-118 (118)
51 cd04045 C2C_Tricalbin-like C2 99.7 4E-16 8.6E-21 145.9 12.3 104 38-157 1-105 (120)
52 cd08382 C2_Smurf-like C2 domai 99.7 4.8E-16 1E-20 146.2 13.0 116 40-171 2-122 (123)
53 cd04018 C2C_Ferlin C2 domain t 99.7 2.7E-16 5.8E-21 152.1 10.7 112 39-154 1-116 (151)
54 cd04010 C2B_RasA3 C2 domain se 99.7 4.3E-16 9.2E-21 150.4 12.0 102 40-158 2-125 (148)
55 cd04027 C2B_Munc13 C2 domain s 99.7 8.5E-16 1.8E-20 145.3 13.3 114 39-171 2-127 (127)
56 cd04051 C2_SRC2_like C2 domain 99.7 3.3E-16 7.1E-21 147.8 10.3 112 39-169 1-125 (125)
57 cd08387 C2A_Synaptotagmin-8 C2 99.7 4.5E-16 9.8E-21 146.6 11.1 103 37-154 15-123 (124)
58 cd04029 C2A_SLP-4_5 C2 domain 99.7 7.7E-16 1.7E-20 145.1 11.8 103 36-153 13-124 (125)
59 cd04039 C2_PSD C2 domain prese 99.6 8.7E-16 1.9E-20 140.7 11.2 97 38-146 1-100 (108)
60 cd04017 C2D_Ferlin C2 domain f 99.6 2.6E-15 5.5E-20 143.7 14.8 118 39-176 2-134 (135)
61 cd08385 C2A_Synaptotagmin-1-5- 99.6 9.5E-16 2.1E-20 144.4 11.5 104 36-154 14-123 (124)
62 cd04041 C2A_fungal C2 domain f 99.6 7.4E-16 1.6E-20 142.2 10.1 99 38-154 1-107 (111)
63 cd08393 C2A_SLP-1_2 C2 domain 99.6 6E-16 1.3E-20 145.9 9.7 103 37-154 14-125 (125)
64 cd08383 C2A_RasGAP C2 domain ( 99.6 3E-15 6.6E-20 139.4 14.2 112 40-173 2-117 (117)
65 cd08676 C2A_Munc13-like C2 dom 99.6 4.2E-16 9E-21 151.0 7.2 120 9-153 5-153 (153)
66 cd04049 C2_putative_Elicitor-r 99.6 2.2E-15 4.7E-20 142.0 11.7 101 38-154 1-107 (124)
67 cd04043 C2_Munc13_fungal C2 do 99.6 4.5E-15 9.7E-20 140.2 13.7 113 39-174 2-121 (126)
68 cd04030 C2C_KIAA1228 C2 domain 99.6 2.4E-15 5.3E-20 142.2 11.2 101 38-153 16-126 (127)
69 cd04052 C2B_Tricalbin-like C2 99.6 2.8E-15 6E-20 138.4 11.1 97 74-176 13-111 (111)
70 cd04040 C2D_Tricalbin-like C2 99.6 3.4E-15 7.3E-20 138.7 11.7 105 40-159 1-107 (115)
71 cd08690 C2_Freud-1 C2 domain f 99.6 5.4E-15 1.2E-19 142.9 13.4 117 40-174 4-137 (155)
72 cd08392 C2A_SLP-3 C2 domain fi 99.6 2.2E-15 4.8E-20 142.3 10.3 102 37-153 14-127 (128)
73 cd04031 C2A_RIM1alpha C2 domai 99.6 3.4E-15 7.3E-20 140.8 11.1 101 37-153 15-124 (125)
74 cd04011 C2B_Ferlin C2 domain s 99.6 4.7E-15 1E-19 136.9 11.8 97 39-155 5-110 (111)
75 cd08680 C2_Kibra C2 domain fou 99.6 3.6E-15 7.7E-20 139.8 10.5 102 37-153 13-124 (124)
76 cd08386 C2A_Synaptotagmin-7 C2 99.6 6.5E-15 1.4E-19 138.9 11.6 103 37-154 15-124 (125)
77 cd08521 C2A_SLP C2 domain firs 99.6 5.6E-15 1.2E-19 138.9 11.0 102 37-153 13-123 (123)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.6 4.1E-15 8.9E-20 141.9 9.8 108 37-161 12-127 (133)
79 cd08407 C2B_Synaptotagmin-13 C 99.6 7.2E-15 1.6E-19 140.0 9.8 108 37-161 14-131 (138)
80 cd08388 C2A_Synaptotagmin-4-11 99.6 1.7E-14 3.7E-19 136.5 12.4 103 37-154 15-127 (128)
81 cd08404 C2B_Synaptotagmin-4 C2 99.6 9.1E-15 2E-19 140.1 10.6 108 37-161 14-129 (136)
82 cd04038 C2_ArfGAP C2 domain pr 99.6 1.4E-14 2.9E-19 139.6 11.7 92 38-146 2-94 (145)
83 cd04032 C2_Perforin C2 domain 99.6 1.7E-14 3.7E-19 135.5 11.5 89 37-142 27-118 (127)
84 cd08406 C2B_Synaptotagmin-12 C 99.6 9.9E-15 2.1E-19 139.2 9.4 108 37-161 14-129 (136)
85 cd08390 C2A_Synaptotagmin-15-1 99.6 2E-14 4.4E-19 135.1 11.4 103 37-154 13-122 (123)
86 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.2E-14 2.6E-19 143.1 10.2 104 36-154 25-137 (162)
87 cd08675 C2B_RasGAP C2 domain s 99.6 1.9E-14 4.1E-19 137.8 11.2 100 40-155 1-120 (137)
88 cd08389 C2A_Synaptotagmin-14_1 99.5 2.2E-14 4.7E-19 135.1 10.8 101 38-154 16-123 (124)
89 cd00275 C2_PLC_like C2 domain 99.5 5.9E-14 1.3E-18 132.8 13.8 116 39-173 3-127 (128)
90 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.1E-14 2.4E-19 139.1 8.9 109 36-161 12-128 (134)
91 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.2E-14 2.6E-19 139.3 8.8 109 36-161 13-129 (136)
92 cd08405 C2B_Synaptotagmin-7 C2 99.5 2.4E-14 5.2E-19 137.2 10.6 108 37-161 14-129 (136)
93 KOG1028 Ca2+-dependent phospho 99.5 6.7E-14 1.5E-18 157.5 15.6 180 35-236 164-353 (421)
94 KOG0696 Serine/threonine prote 99.5 2.7E-15 6E-20 158.8 3.9 104 37-156 179-289 (683)
95 cd00276 C2B_Synaptotagmin C2 d 99.5 2.3E-14 5E-19 136.8 9.1 108 37-161 13-128 (134)
96 cd08692 C2B_Tac2-N C2 domain s 99.5 3.9E-14 8.4E-19 133.2 10.3 109 37-161 13-129 (135)
97 cd04021 C2_E3_ubiquitin_ligase 99.5 9.6E-14 2.1E-18 130.9 12.9 115 39-171 3-124 (125)
98 cd04026 C2_PKC_alpha_gamma C2 99.5 4.8E-14 1E-18 134.1 10.8 106 35-156 10-122 (131)
99 cd08686 C2_ABR C2 domain in th 99.5 1.2E-13 2.6E-18 126.3 12.1 79 40-139 1-91 (118)
100 cd08410 C2B_Synaptotagmin-17 C 99.5 2.9E-14 6.3E-19 136.3 8.3 108 37-161 13-129 (135)
101 PHA02820 phospholipase-D-like 99.5 1.8E-13 3.9E-18 154.4 15.3 146 491-727 5-150 (424)
102 cd08691 C2_NEDL1-like C2 domai 99.5 2E-13 4.4E-18 130.0 13.2 114 40-171 3-136 (137)
103 cd00138 PLDc Phospholipase D. 99.5 1.8E-13 4E-18 137.0 13.4 144 236-450 21-169 (176)
104 cd08409 C2B_Synaptotagmin-15 C 99.5 5E-14 1.1E-18 135.0 8.5 108 37-160 14-129 (137)
105 cd04009 C2B_Munc13-like C2 dom 99.5 7.8E-14 1.7E-18 133.1 9.6 91 38-143 16-118 (133)
106 PLN03200 cellulose synthase-in 99.5 5.8E-14 1.2E-18 177.8 10.7 123 35-175 1977-2101(2102)
107 cd04048 C2A_Copine C2 domain f 99.5 1.5E-13 3.2E-18 128.8 10.3 97 43-154 5-113 (120)
108 cd08408 C2B_Synaptotagmin-14_1 99.5 7.2E-14 1.6E-18 133.8 8.2 109 37-161 14-131 (138)
109 cd04037 C2E_Ferlin C2 domain f 99.5 3E-13 6.4E-18 127.4 11.9 89 40-143 2-93 (124)
110 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.8E-13 8.2E-18 126.5 11.2 99 38-151 15-121 (123)
111 KOG3603 Predicted phospholipas 99.4 1.1E-10 2.4E-15 125.5 30.4 340 237-729 73-419 (456)
112 cd00138 PLDc Phospholipase D. 99.4 1.4E-12 3E-17 130.6 10.6 130 530-729 20-152 (176)
113 PRK12452 cardiolipin synthetas 99.4 2.5E-12 5.4E-17 148.8 11.6 154 205-451 328-481 (509)
114 PRK13912 nuclease NucT; Provis 99.4 1.4E-11 3E-16 123.3 15.2 140 236-450 33-174 (177)
115 PRK13912 nuclease NucT; Provis 99.4 5.2E-12 1.1E-16 126.4 12.1 127 531-731 33-160 (177)
116 PHA03003 palmytilated EEV memb 99.4 4.8E-12 1E-16 141.2 13.0 141 237-450 217-363 (369)
117 cd04047 C2B_Copine C2 domain s 99.3 9.7E-12 2.1E-16 114.5 10.8 87 42-144 4-101 (110)
118 KOG1011 Neurotransmitter relea 99.3 3.9E-12 8.5E-17 140.0 8.1 122 38-178 295-430 (1283)
119 KOG2059 Ras GTPase-activating 99.3 8.1E-12 1.8E-16 140.3 8.8 123 39-179 6-130 (800)
120 PF13091 PLDc_2: PLD-like doma 99.3 1.8E-11 4E-16 115.3 9.4 114 536-730 1-114 (126)
121 PF00168 C2: C2 domain; Inter 99.2 3.6E-11 7.8E-16 104.4 9.7 80 40-135 1-85 (85)
122 PLN02223 phosphoinositide phos 99.2 6.5E-11 1.4E-15 133.5 13.3 123 37-173 408-536 (537)
123 COG5038 Ca2+-dependent lipid-b 99.2 1.1E-10 2.4E-15 138.4 11.4 133 35-186 433-569 (1227)
124 cd00030 C2 C2 domain. The C2 d 99.2 1.8E-10 3.9E-15 102.4 10.2 99 40-153 1-102 (102)
125 COG5038 Ca2+-dependent lipid-b 99.1 9.8E-11 2.1E-15 138.7 10.0 133 27-176 1029-1163(1227)
126 smart00239 C2 Protein kinase C 99.1 2.6E-10 5.7E-15 101.7 10.5 93 39-146 1-97 (101)
127 PLN02952 phosphoinositide phos 99.1 3.8E-10 8.3E-15 130.0 13.3 124 37-173 469-598 (599)
128 PF13091 PLDc_2: PLD-like doma 99.1 7.4E-10 1.6E-14 104.3 11.6 124 241-447 1-126 (126)
129 PLN02230 phosphoinositide phos 99.1 6E-10 1.3E-14 128.2 12.5 124 37-173 468-597 (598)
130 PRK01642 cls cardiolipin synth 99.1 6.7E-10 1.5E-14 128.5 12.6 152 205-450 302-454 (483)
131 KOG0169 Phosphoinositide-speci 99.0 6E-10 1.3E-14 127.8 10.5 122 39-175 617-745 (746)
132 PLN02222 phosphoinositide phos 99.0 1.6E-09 3.4E-14 124.6 13.3 122 37-173 451-580 (581)
133 PLN02228 Phosphoinositide phos 99.0 2.6E-09 5.7E-14 122.5 13.1 127 37-176 430-563 (567)
134 cd08374 C2F_Ferlin C2 domain s 99.0 3E-09 6.5E-14 100.2 10.2 93 40-145 2-125 (133)
135 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2.1E-09 4.5E-14 95.1 8.1 85 40-143 1-88 (109)
136 KOG1028 Ca2+-dependent phospho 98.9 2.1E-09 4.5E-14 121.4 8.4 108 37-161 297-412 (421)
137 PRK11263 cardiolipin synthase 98.9 8E-09 1.7E-13 116.4 11.6 136 236-450 206-342 (411)
138 PRK05443 polyphosphate kinase; 98.9 8E-09 1.7E-13 122.3 11.7 119 534-731 351-481 (691)
139 PF00614 PLDc: Phospholipase D 98.9 6.1E-10 1.3E-14 74.4 0.8 27 353-387 2-28 (28)
140 KOG1264 Phospholipase C [Lipid 98.7 4.3E-08 9.3E-13 111.5 10.2 125 35-179 1062-1194(1267)
141 KOG1031 Predicted Ca2+-depende 98.7 2.8E-08 6.1E-13 109.0 7.9 119 37-173 2-135 (1169)
142 PRK09428 pssA phosphatidylseri 98.7 1.2E-07 2.7E-12 107.7 12.0 135 531-730 35-179 (451)
143 KOG3603 Predicted phospholipas 98.6 4.1E-07 8.8E-12 98.5 14.7 157 237-451 277-440 (456)
144 KOG1328 Synaptic vesicle prote 98.6 6.1E-09 1.3E-13 117.1 -0.5 122 40-178 116-305 (1103)
145 smart00155 PLDc Phospholipase 98.6 5.1E-08 1.1E-12 66.0 3.3 26 687-712 3-28 (28)
146 KOG1328 Synaptic vesicle prote 98.4 1.4E-07 3E-12 106.4 1.9 101 27-142 934-1048(1103)
147 COG1502 Cls Phosphatidylserine 98.3 3.2E-06 6.9E-11 97.4 10.2 135 239-450 273-409 (438)
148 PF00614 PLDc: Phospholipase D 98.2 4.3E-07 9.4E-12 60.8 0.6 25 688-712 4-28 (28)
149 cd08683 C2_C2cd3 C2 domain fou 98.1 4.8E-06 1E-10 76.1 5.9 110 40-153 1-143 (143)
150 KOG2059 Ras GTPase-activating 97.9 2E-05 4.3E-10 89.8 6.7 104 74-177 151-279 (800)
151 KOG3964 Phosphatidylglycerolph 97.8 0.00056 1.2E-08 73.6 16.1 132 234-391 37-173 (469)
152 TIGR03705 poly_P_kin polyphosp 97.6 0.0004 8.7E-09 82.5 12.6 118 534-730 342-471 (672)
153 KOG0905 Phosphoinositide 3-kin 97.6 6E-05 1.3E-09 89.9 4.4 106 34-154 1520-1634(1639)
154 smart00155 PLDc Phospholipase 97.5 9.9E-05 2.1E-09 49.9 3.0 25 354-386 3-27 (28)
155 KOG1011 Neurotransmitter relea 97.5 0.00022 4.8E-09 80.0 7.0 99 40-154 1127-1236(1283)
156 KOG1326 Membrane-associated pr 97.5 6.8E-05 1.5E-09 88.6 3.1 86 39-139 614-702 (1105)
157 PLN02964 phosphatidylserine de 97.4 0.00013 2.8E-09 85.8 5.0 102 36-159 52-157 (644)
158 PLN02866 phospholipase D 97.4 0.00058 1.2E-08 82.8 9.6 61 531-598 344-404 (1068)
159 KOG1013 Synaptic vesicle prote 97.4 0.00023 4.9E-09 75.0 5.4 99 38-153 233-339 (362)
160 PF13918 PLDc_3: PLD-like doma 97.3 0.00072 1.6E-08 66.5 8.2 57 237-295 83-140 (177)
161 KOG1013 Synaptic vesicle prote 97.3 8.8E-05 1.9E-09 78.0 1.3 125 39-178 94-233 (362)
162 PF07894 DUF1669: Protein of u 97.1 0.0034 7.4E-08 66.2 11.0 163 203-447 116-278 (284)
163 KOG1265 Phospholipase C [Lipid 97.0 0.003 6.5E-08 74.0 9.9 117 19-161 685-811 (1189)
164 KOG2060 Rab3 effector RIM1 and 96.9 0.00087 1.9E-08 71.9 4.2 110 34-157 265-381 (405)
165 PF13918 PLDc_3: PLD-like doma 96.8 0.026 5.6E-07 55.7 13.1 56 533-602 84-145 (177)
166 KOG1326 Membrane-associated pr 96.8 0.00048 1E-08 81.7 1.1 102 37-155 205-317 (1105)
167 cd08684 C2A_Tac2-N C2 domain f 96.7 0.0015 3.2E-08 55.9 3.0 95 42-152 3-102 (103)
168 PF07894 DUF1669: Protein of u 96.2 0.019 4.2E-07 60.7 9.1 131 530-726 133-263 (284)
169 KOG1327 Copine [Signal transdu 95.9 0.014 3E-07 66.5 6.4 83 45-143 143-236 (529)
170 COG0855 Ppk Polyphosphate kina 95.9 0.46 9.9E-06 55.2 18.3 96 232-366 348-448 (696)
171 KOG3837 Uncharacterized conser 95.8 0.0074 1.6E-07 65.4 3.5 98 74-174 388-503 (523)
172 PLN02352 phospholipase D epsil 95.6 0.032 6.9E-07 66.6 8.3 86 204-295 426-519 (758)
173 PF10358 NT-C2: N-terminal C2 95.6 0.22 4.9E-06 47.7 12.8 118 39-179 8-140 (143)
174 PF13090 PP_kinase_C: Polyphos 95.3 1 2.2E-05 49.1 17.5 137 236-445 18-160 (352)
175 PF12416 DUF3668: Cep120 prote 95.2 0.2 4.3E-06 55.1 12.3 119 40-177 2-135 (340)
176 PF11495 Regulator_TrmB: Archa 95.1 0.073 1.6E-06 55.8 8.3 49 236-297 10-58 (233)
177 cd08398 C2_PI3K_class_I_alpha 94.7 0.18 4E-06 49.3 9.3 84 37-139 7-104 (158)
178 KOG1329 Phospholipase D1 [Lipi 94.0 0.15 3.3E-06 61.2 8.2 29 353-389 699-727 (887)
179 COG3886 Predicted HKD family n 94.0 0.38 8.2E-06 47.6 9.6 140 235-448 38-178 (198)
180 cd08693 C2_PI3K_class_I_beta_d 93.3 0.46 1E-05 47.3 9.2 72 37-125 7-87 (173)
181 PLN03008 Phospholipase D delta 92.9 0.36 7.9E-06 58.3 9.0 60 236-295 567-633 (868)
182 PLN02270 phospholipase D alpha 92.5 0.35 7.6E-06 58.3 8.2 61 235-295 498-569 (808)
183 PF15627 CEP76-C2: CEP76 C2 do 92.2 0.83 1.8E-05 44.3 8.8 102 74-176 34-152 (156)
184 KOG1452 Predicted Rho GTPase-a 91.1 0.47 1E-05 50.1 6.3 124 30-175 43-168 (442)
185 cd08397 C2_PI3K_class_III C2 d 91.0 0.7 1.5E-05 45.3 7.1 67 74-140 30-106 (159)
186 cd04012 C2A_PI3K_class_II C2 d 90.8 0.92 2E-05 45.1 8.0 88 37-139 7-117 (171)
187 cd08380 C2_PI3K_like C2 domain 90.7 1.3 2.9E-05 43.2 9.0 86 39-140 9-106 (156)
188 PF15625 CC2D2AN-C2: CC2D2A N- 89.9 1.4 3E-05 43.7 8.3 69 74-142 37-107 (168)
189 cd08687 C2_PKN-like C2 domain 88.9 2.8 6E-05 36.7 8.1 64 74-141 9-72 (98)
190 PF00792 PI3K_C2: Phosphoinosi 87.8 1.9 4.2E-05 41.3 7.6 67 75-141 3-85 (142)
191 cd08695 C2_Dock-B C2 domains f 87.8 4.7 0.0001 40.5 10.4 52 88-139 55-112 (189)
192 cd08399 C2_PI3K_class_I_gamma 87.2 5.3 0.00012 39.9 10.3 71 38-124 10-88 (178)
193 cd08694 C2_Dock-A C2 domains f 87.0 3.4 7.4E-05 41.6 8.8 53 87-139 54-114 (196)
194 PF13090 PP_kinase_C: Polyphos 86.5 1.7 3.6E-05 47.5 6.8 94 576-731 51-151 (352)
195 PF14429 DOCK-C2: C2 domain in 85.9 2.4 5.3E-05 42.6 7.4 53 88-140 61-120 (184)
196 PF11618 DUF3250: Protein of u 83.0 4.7 0.0001 36.7 7.1 93 77-173 2-104 (107)
197 KOG4269 Rac GTPase-activating 82.3 5.7 0.00012 47.9 9.1 126 27-180 748-888 (1112)
198 KOG1327 Copine [Signal transdu 80.8 3.9 8.4E-05 47.2 7.0 85 85-172 40-130 (529)
199 smart00142 PI3K_C2 Phosphoinos 80.6 8.8 0.00019 34.4 8.0 51 74-124 32-91 (100)
200 COG0855 Ppk Polyphosphate kina 77.2 8 0.00017 45.4 8.1 94 576-731 385-485 (696)
201 PF09565 RE_NgoFVII: NgoFVII r 74.6 3.2 6.8E-05 44.9 3.8 41 687-729 79-124 (296)
202 cd08679 C2_DOCK180_related C2 73.7 9.5 0.00021 38.1 6.8 51 90-140 56-115 (178)
203 COG3886 Predicted HKD family n 71.7 44 0.00096 33.5 10.6 51 531-600 39-90 (198)
204 cd08696 C2_Dock-C C2 domains f 71.4 14 0.00029 37.0 7.2 54 86-139 54-117 (179)
205 KOG3543 Ca2+-dependent activat 69.0 37 0.00079 39.5 10.5 115 36-172 339-457 (1218)
206 PTZ00447 apical membrane antig 62.6 64 0.0014 35.1 10.3 94 75-175 75-172 (508)
207 PF11495 Regulator_TrmB: Archa 62.6 24 0.00051 36.9 7.4 50 530-599 9-58 (233)
208 cd08697 C2_Dock-D C2 domains f 61.6 29 0.00062 34.9 7.3 39 86-124 56-97 (185)
209 PF06087 Tyr-DNA_phospho: Tyro 56.5 4.7 0.0001 46.6 0.9 39 687-726 347-402 (443)
210 KOG3964 Phosphatidylglycerolph 55.9 14 0.0003 40.9 4.2 54 531-600 39-92 (469)
211 PF06219 DUF1005: Protein of u 53.5 1.6E+02 0.0035 33.1 11.8 101 74-176 36-169 (460)
212 cd05137 RasGAP_CLA2_BUD2 CLA2/ 53.0 15 0.00032 41.6 4.1 44 130-175 1-45 (395)
213 KOG0694 Serine/threonine prote 41.1 18 0.00038 43.0 2.4 79 74-153 28-108 (694)
214 KOG2419 Phosphatidylserine dec 38.5 3.2 7E-05 48.0 -3.9 96 13-124 258-355 (975)
215 PF07162 B9-C2: Ciliary basal 31.1 4.5E+02 0.0097 25.8 10.3 65 74-138 17-101 (168)
216 COG2044 Predicted peroxiredoxi 28.7 1.6E+02 0.0035 27.4 6.0 60 234-293 16-80 (120)
217 PF06087 Tyr-DNA_phospho: Tyro 28.4 38 0.00082 39.1 2.4 37 688-727 101-141 (443)
218 PF07615 Ykof: YKOF-related Fa 23.2 1.6E+02 0.0034 25.4 4.6 69 205-295 3-72 (81)
219 PF06415 iPGM_N: BPG-independe 22.7 1.3E+02 0.0029 31.1 4.9 52 239-298 14-71 (223)
220 KOG0904 Phosphatidylinositol 3 21.5 2.7E+02 0.0058 34.5 7.5 67 38-122 343-420 (1076)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=4.2e-181 Score=1538.39 Aligned_cols=802 Identities=57% Similarity=0.994 Sum_probs=726.6
Q ss_pred CCceeeeeceEEEEEEEEeeCCCCCCCCCcccccccc---------------------------ccCCCCCCCCcEEEEE
Q 003210 29 GSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFN---------------------------SQMNTKITSDPYVTIA 81 (839)
Q Consensus 29 ~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~---------------------------~~~~~~~~sDPYv~v~ 81 (839)
-+.+++|+||+|+++|++|++|++||++.+...++|. .+++...++||||+|.
T Consensus 5 ~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~ 84 (868)
T PLN03008 5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVV 84 (868)
T ss_pred cccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEE
Confidence 3678899999999999999999999876653333321 0123356799999999
Q ss_pred ECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 82 VAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 82 l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
+++++++||++++++.||+|||+|+|+|+++...|+|+|+|+|.+++++||++.|||+++..|..++.|++|++..+++.
T Consensus 85 Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 85 VPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPP 164 (868)
T ss_pred ECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCC
Confidence 99998889999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeecccccccccCCCCCCCCCCCCCCCCCccccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHH
Q 003210 162 KPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDI 241 (839)
Q Consensus 162 ~~~g~L~l~l~f~p~~~~~~~~~Gv~~g~~~~gv~~~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l 241 (839)
+++++|+|+|+|+|+..++.|.+|++++++|.|||.||||+|.||+|+||||||.+|+++|.|.|+||+.|+|++||++|
T Consensus 165 k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi 244 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDI 244 (868)
T ss_pred CCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccEEEEEecccceeEecCCC--CCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccCcHH
Q 003210 242 CNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEE 319 (839)
Q Consensus 242 ~~aI~~A~~~I~I~~w~~~~~~~l~r~~~--~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~ 319 (839)
++||++||++|||++||++|+++|+|++. ...+.+|++||++||+|||+|+|||||+++|...++++..|+|.+++++
T Consensus 245 ~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdee 324 (868)
T PLN03008 245 CYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEE 324 (868)
T ss_pred HHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHH
Confidence 99999999999999999999999999873 2247899999999999999999999999998866678888999999999
Q ss_pred HHhhhcCCCcEEEeccCccCccccccccc-----------cccceecccceEEEEecCCCCCCccEEEEEccccCCCCCC
Q 003210 320 TRRVFKHSSVKVLLCPRIAGKRHSWAKQK-----------EVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 388 (839)
Q Consensus 320 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~ 388 (839)
++++|+|++|.|.++|+..+...+++++. .++++|+||||+||||++.++++|+.+|||||+|||+|||
T Consensus 325 t~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRw 404 (868)
T PLN03008 325 TRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRY 404 (868)
T ss_pred HHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCcc
Confidence 99999999999999998877667776652 3467899999999999987777899999999999999999
Q ss_pred CCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhhcCCCCc----ccC-CCCc
Q 003210 389 DNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGI----KKL-KSGD 463 (839)
Q Consensus 389 Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~----~~l-~~~~ 463 (839)
||+.|++++++++.+.+||+||++.+ ..+.|++||||+|++|+||||++|+.+|++||+++++...+ ++. ...+
T Consensus 405 DT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~ 483 (868)
T PLN03008 405 DTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 483 (868)
T ss_pred CCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccccccc
Confidence 99999999999999999999998754 34578999999999999999999999999999999874311 111 1234
Q ss_pred hhhhhcccCCCCcCCCC-------------CCC---CCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCccc
Q 003210 464 DALLRIERIPGIIGISD-------------APS---VRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVL 527 (839)
Q Consensus 464 ~~~~~~~~~p~~~~~~~-------------~~~---~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~ 527 (839)
+.++.+.+++.++.+.. .+. ....++++|.+|+|||++.|+++++|..+.++...+++||++..
T Consensus 484 d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ 563 (868)
T PLN03008 484 DALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLV 563 (868)
T ss_pred chhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccc
Confidence 56666666655443210 010 11246688999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCc
Q 003210 528 IDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTG 607 (839)
Q Consensus 528 ~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~ 607 (839)
+|+||++||++||++||||||||||||+++++.|+++++.++.|+||++|+++|+++++++++|+|+||+|+||||.+.+
T Consensus 564 ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~s 643 (868)
T PLN03008 564 VDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKS 643 (868)
T ss_pred hhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeE
Q 003210 608 AATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMI 687 (839)
Q Consensus 608 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 687 (839)
++.|+|++||++||++||.+++++|++.|.+. +|.+|++|||||||+.... ..++..++.+..+|++|+++|
T Consensus 644 g~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~------~~~~~~~~~~~~a~~~rr~~I 715 (868)
T PLN03008 644 GPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPD------DMPATNGSVVSDSYNFQRFMI 715 (868)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccC------CCCCCCCchhhhhhhccceeE
Confidence 99999999999999999999999999988654 5889999999999987642 123344556677888999999
Q ss_pred EEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCCcc
Q 003210 688 YVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPET 767 (839)
Q Consensus 688 yvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~ehlg~~~~~~~~~~~ 767 (839)
|||||+|||||++++|||||||+|||.|+||+|+++.++++.++|+...+.++|+|++||++||+||||+.++.|.+|+|
T Consensus 716 YvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s 795 (868)
T PLN03008 716 YVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSD 795 (868)
T ss_pred EEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCC
Confidence 99999999999999999999999999999999999999999999876677899999999999999999999999999999
Q ss_pred hhHHHHhhhhhccchhhhhhhhhccccccccccccccCCCCCccCCCCCCCCCCCCCccccccc-CCCCCCCC
Q 003210 768 LECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF-AIQENLTI 839 (839)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 839 (839)
++|+++||++|++||++|+++++.+|+|||++||+.|+.+|+|++|||+|+||||+|+|+|+++ +||++|||
T Consensus 796 ~ecv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 796 LECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999996 89999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=1.6e-171 Score=1462.47 Aligned_cols=786 Identities=46% Similarity=0.842 Sum_probs=699.8
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccc---cc-CCCCCCCCcEEEEEECCEEEEEeeeeeC-CCCCeeeeEEEEE
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFN---SQ-MNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVP 108 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~---~~-~~~~~~sDPYv~v~l~~~~~~rT~vi~~-~~nP~WnE~F~~~ 108 (839)
+|+||+|+|+|++|++|++++. .+.+++++. +. .....++||||+|.+++.+++||+++.+ ..||+|||+|+++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 4899999999999999998643 111122111 11 1123468999999999999999999988 5699999999999
Q ss_pred ccCCCceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecccccccccCCCCC
Q 003210 109 VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGE 188 (839)
Q Consensus 109 v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~~~~~~Gv~~ 188 (839)
|+|..+.|+|+|+|.|.++..+||.++||+++|.+|..+++||++++.+|||.+++.+|||+++|+|++.++.|.+|+++
T Consensus 83 ~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~ 162 (808)
T PLN02270 83 CAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS 162 (808)
T ss_pred eccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999965
Q ss_pred CCCCCCCCCCCCccccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecC
Q 003210 189 GPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRD 268 (839)
Q Consensus 189 g~~~~gv~~~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~ 268 (839)
++|.|+|.||||+|.||+|+||||+|.+|+++|.|.+++|+.|++.+||+++++||.+||++|||++|+|+|+|+|+|+
T Consensus 163 -~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd 241 (808)
T PLN02270 163 -AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRD 241 (808)
T ss_pred -cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC---CCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCcccccc
Q 003210 269 ASP---ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA 345 (839)
Q Consensus 269 ~~~---~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~ 345 (839)
+.. +...+|+++|++||++||+|+||+||+.++... ++..|+|.+++++++++|++.+|+|+++|+.+....+++
T Consensus 242 ~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~ 319 (808)
T PLN02270 242 SRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIV 319 (808)
T ss_pred CCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCccccccee
Confidence 542 245799999999999999999999999887644 345688999999999999999999999998766555566
Q ss_pred ccccccceecccceEEEEecCCCC---CCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCC--CCCCC
Q 003210 346 KQKEVGTIYTHHQKTVIVDADAGY---NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGN--TTGCP 420 (839)
Q Consensus 346 ~~~~~~~~~~hHqK~vVVD~~~~~---~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~--~~~~~ 420 (839)
.+..+++.++||||+||||++.++ ++|+.+|||||+|||++||||++|++|+++++.|++||+||.|.+. ..++|
T Consensus 320 ~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~P 399 (808)
T PLN02270 320 QDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGP 399 (808)
T ss_pred eccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCC
Confidence 655677889999999999997543 4799999999999999999999999999999999999999998763 46789
Q ss_pred CCCeeeeeeeeeChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhcccCCCCcCCCCCCCCCCCCCCcceeeEeeec
Q 003210 421 REPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSI 500 (839)
Q Consensus 421 ~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~ 500 (839)
|+||||+|++|+||+|++|+.+|++||+.++++.. +....+++.+..++ .+...+.+.++|+||+|||+
T Consensus 400 r~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~l----------l~~~~~~~~~~~P~-~~~~~p~d~~~w~VQvfRSi 468 (808)
T PLN02270 400 REPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDI----------LVQLRELEDVIIPP-SPVMFPDDHEVWNVQLFRSI 468 (808)
T ss_pred CCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccc----------hhhhcccccccCCC-CcccCCCcCCccccceeecc
Confidence 99999999999999999999999999999887531 11111111111111 11112245678999999999
Q ss_pred cCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccc----cccCCCCccHHH
Q 003210 501 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSY----RDLGANNLIPME 576 (839)
Q Consensus 501 ~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~----~~~~~~n~i~~~ 576 (839)
+.++++++|..|.++...++++|++..+++||+.+|++||++||||||||||||+++++.|..+ ++.++.|+||++
T Consensus 469 d~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~e 548 (808)
T PLN02270 469 DGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKE 548 (808)
T ss_pred cchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHH
Confidence 9999999999999888888999998888999999999999999999999999999999999765 788999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccc
Q 003210 577 IALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNRE 656 (839)
Q Consensus 577 ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~ 656 (839)
|+++|+++|+++++|+||||+|+||||.+++.+.|+||+||++||++|+.+++++|+++|+.. +|.+|++||||+|||
T Consensus 549 l~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~--dp~dyL~ff~L~nre 626 (808)
T PLN02270 549 LSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEE--DPRNYLTFFCLGNRE 626 (808)
T ss_pred HHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--CccceEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753 588999999999999
Q ss_pred cccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhhhhhcc
Q 003210 657 VIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMK 736 (839)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~ 736 (839)
.....++ .|...+..++++..+|+.++++||||||+|||||++++|||||||+|||.|++||||+|..++|.++.+.
T Consensus 627 ~~~~g~~-~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~-- 703 (808)
T PLN02270 627 VKKSGEY-EPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTR-- 703 (808)
T ss_pred cccCccc-CCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCccccccc--
Confidence 7654322 1333344566788889999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHhhhhhccchhhhhhhhh-ccccccccccccccCCCCCccCCCC
Q 003210 737 RHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQ-SEMRSHLIKYPVEVDRKGKVRPIPG 815 (839)
Q Consensus 737 ~~~~~~~~~lR~~Lw~ehlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~p~~~~~~~~~~~~~~ 815 (839)
..++++|++||++||+||||+.++.|.+|+|++|+++||++|++||++|+++++ .+|+|||++||+.|+.+|+|++|||
T Consensus 704 ~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g 783 (808)
T PLN02270 704 QPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPG 783 (808)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCC
Confidence 367899999999999999999999999999999999999999999999999999 5899999999999999999999999
Q ss_pred CCCCCCCCCccccccc-CCCCCCCC
Q 003210 816 YETFPDVGGNIVGSFF-AIQENLTI 839 (839)
Q Consensus 816 ~~~~~~~~~~~~~~~~-~~~~~~~~ 839 (839)
+|+||||+|+|+|+++ +||++|||
T Consensus 784 ~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 784 TEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCcCCCCCCceeccccccCCccccC
Confidence 9999999999999996 89999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=5.1e-165 Score=1407.95 Aligned_cols=739 Identities=43% Similarity=0.744 Sum_probs=647.9
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~ 113 (839)
.|+||+|++||++|+-+... +.. . ..+ ..+.||||+|.+++.+++|| .+..||+|||+|+++|+|..
T Consensus 6 ~~lhg~l~~~i~~~~~~~~~--~~~-~-~~~------~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~ 72 (758)
T PLN02352 6 KFFHGTLEATIFDATPYTPP--FPF-N-CIF------LNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL 72 (758)
T ss_pred cccccceEEEEEEeeehhhc--ccc-c-ccc------cCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec
Confidence 48999999999999932211 110 0 000 01149999999999999999 66779999999999999998
Q ss_pred -ceEEEEEEeecCCCCcceeEEEEeceeeecCcc-ccceeeecCCCCCCCCCCceEEEEEEeecccccccccCCCCCCCC
Q 003210 114 -AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGK-VEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPD 191 (839)
Q Consensus 114 -~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~-~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~~~~~~Gv~~g~~ 191 (839)
+.|+|+|+| +.++||++.||+.+|.+|+. +++||++++.+|||..+ .+||++|+|+|++.++.|.+|+.+ ++
T Consensus 73 ~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~ 146 (758)
T PLN02352 73 DSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-GS 146 (758)
T ss_pred CCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-CC
Confidence 799999998 58899999999999999877 99999999999999865 799999999999999999999976 69
Q ss_pred CCCCCCCCCccccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCC
Q 003210 192 YNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASP 271 (839)
Q Consensus 192 ~~gv~~~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~ 271 (839)
|.|+|.||||+|.||+|+||||||++|+++|.|.+ .|.++++|++|++||++||++|||++|+|+++++|+|++..
T Consensus 147 ~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~ 222 (758)
T PLN02352 147 FQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPET 222 (758)
T ss_pred cCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCccc
Confidence 99999999999999999999999999999999988 58889999999999999999999999999999999998631
Q ss_pred ----CCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCcccccccc
Q 003210 272 ----ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQ 347 (839)
Q Consensus 272 ----~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~ 347 (839)
+.+.+|+++|++||++||+||||+||+.++... ++..|.|.++++++.++++|++|.|+++|+...
T Consensus 223 ~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~-------- 292 (758)
T PLN02352 223 DIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK-------- 292 (758)
T ss_pred ccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccccc--------
Confidence 357899999999999999999999999887644 455678899999999999999999999987532
Q ss_pred ccccceecccceEEEEecCCCC--CCccEEEEEccccCCCCCCCCCCCCCccccccc-cCCCCCCCcccCC--CCCCCCC
Q 003210 348 KEVGTIYTHHQKTVIVDADAGY--NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTL-HKDDYHNPTFTGN--TTGCPRE 422 (839)
Q Consensus 348 ~~~~~~~~hHqK~vVVD~~~~~--~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~-~~~d~~n~~~~~~--~~~~~~~ 422 (839)
..++.|+||||+||||++.++ ++|+.+|||||+|||+|||||++|++++++++. |++||+|+.|.+. +.++||+
T Consensus 293 -~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~ 371 (758)
T PLN02352 293 -KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPRE 371 (758)
T ss_pred -ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCCC
Confidence 235679999999999997543 468889999999999999999999999999874 7799999998763 5688999
Q ss_pred CeeeeeeeeeChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccC
Q 003210 423 PWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDS 502 (839)
Q Consensus 423 pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~ 502 (839)
||||+||+|+||||+||.+||+|||+++++... +++...++.+..++. .+..+.++|+||++||++.
T Consensus 372 PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~----------l~p~~~~~~~~~~p~---~~~~~~~~w~VQv~RSid~ 438 (758)
T PLN02352 372 PWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSV----------LVPTSSIRNLVHQPG---SSESNNRNWKVQVYRSIDH 438 (758)
T ss_pred CcEeEEEEEECHHHHHHHHHHHHHHhhccCccc----------cCCcccccccccCCC---CCcccCCcccceEEEecCc
Confidence 999999999999999999999999999876431 111111111111111 1123457899999999999
Q ss_pred cccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHH
Q 003210 503 TSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIA 582 (839)
Q Consensus 503 ~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia 582 (839)
|++.++|.. ..+|+||++||++||++||||||||||||+++++.|+..++.++.|+||++|+++|+
T Consensus 439 ~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~ 504 (758)
T PLN02352 439 VSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIA 504 (758)
T ss_pred cccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHH
Confidence 999888743 235899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccC
Q 003210 583 DKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTD 662 (839)
Q Consensus 583 ~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~ 662 (839)
++++++++|+|+||+|++|+|.+++.+.|+|++||++||++||.++.++|+++|.+. +|++||+|||||||+.....+
T Consensus 505 ~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~--~P~dYl~F~cL~n~e~~~~g~ 582 (758)
T PLN02352 505 SKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG--HPRDYLNFFCLANREEKRKGE 582 (758)
T ss_pred HHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--ChhHheeeecccccccccCCc
Confidence 999999999999999999999999999999999999999999999999999998654 599999999999999775443
Q ss_pred CCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhhhhhccCCCCch
Q 003210 663 TSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQ 742 (839)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~ 742 (839)
... ...+..++.+..+++.++++||||||+|||||+++||||||||+|||.|++||||+|+++|+++... ....++
T Consensus 583 ~~~-~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~---~~~~~~ 658 (758)
T PLN02352 583 FVP-PYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN---TNNPRD 658 (758)
T ss_pred ccc-ccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC---cccchH
Confidence 221 1223344556677788889999999999999999999999999999999999999999999986532 245689
Q ss_pred hHHHHHHHHHHHhCCCccccCCCcchhHHHHhhhhhccchhhhhhhhhccccc-cccccccccCCCCCccCC-CCCCCCC
Q 003210 743 IYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRS-HLIKYPVEVDRKGKVRPI-PGYETFP 820 (839)
Q Consensus 743 ~~~lR~~Lw~ehlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~p~~~~~~~~~~~~-~~~~~~~ 820 (839)
+++||++||+||||+.++.|.+|+|++|++++|+++++||++|+++++++|+| ||++||+.|+.+|+|++| ||.|+||
T Consensus 659 i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~fp 738 (758)
T PLN02352 659 IQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNFP 738 (758)
T ss_pred HHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999 6999999
Q ss_pred CCCCccccccc-CCCCCCCC
Q 003210 821 DVGGNIVGSFF-AIQENLTI 839 (839)
Q Consensus 821 ~~~~~~~~~~~-~~~~~~~~ 839 (839)
||+|+|+|+++ +||++|||
T Consensus 739 d~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 739 DTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCceeccccccCCccccC
Confidence 99999999996 99999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=7e-147 Score=1248.74 Aligned_cols=751 Identities=50% Similarity=0.810 Sum_probs=665.3
Q ss_pred CCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccc-------------------ccc-------CCCCCCCCcEEEE
Q 003210 27 TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMF-------------------NSQ-------MNTKITSDPYVTI 80 (839)
Q Consensus 27 ~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~-------------------~~~-------~~~~~~sDPYv~v 80 (839)
+..+..+.|+||+|+++|+++..+.++..+....+..+ .+. .++..++++|+++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTV 144 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchhee
Confidence 34566778999999999999999986543322111000 000 1112336999999
Q ss_pred EECCEEEEEeeeeeCC-CCCeeeeEEEEEccCCCceEEEEEEeecCCC-CcceeEEEEeceeeecCccccceeeecCCCC
Q 003210 81 AVAGAVVGRTFVISNS-EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 158 (839)
Q Consensus 81 ~l~~~~~~rT~vi~~~-~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~g 158 (839)
.+....+.+|..+.+. .+|.|.+.|.+.+.+....++++|.+.+..+ ..++|.+++|+..+.+|..+++|+++++.++
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9999999899998886 9999999999999999999999999999988 9999999999999999988999999999999
Q ss_pred CCCCCCceEEEEEEeecccccccccCCCCCCCCCCCCCCCCCccccCceeEEeecCCCCCCCCCceeecCCccc-cchhh
Q 003210 159 KPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSY-VHGKC 237 (839)
Q Consensus 159 k~~~~~g~L~l~l~f~p~~~~~~~~~Gv~~g~~~~gv~~~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y-~~~~~ 237 (839)
++.+++..+.+++.|++++.+..|..|+.+++++.+++.++||.+.||.|++|+|+|..+++.|.+.+++|++| ....|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 99888889999999999999999999999989999999999999999999999999999999999999999955 55678
Q ss_pred HHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccCc
Q 003210 238 WYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 317 (839)
Q Consensus 238 f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~ 317 (839)
|+++++||++||+.|||++||++|+++|+|+...+.+.||+++|++||++||+|+|||||++++... .+++.
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i~S~~ 376 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------INSHY 376 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhccc--------cCchh
Confidence 9999999999999999999999999999999887778999999999999999999999999987643 23677
Q ss_pred HHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCcc
Q 003210 318 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 397 (839)
Q Consensus 318 ~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~ 397 (839)
+++..+++|++|+|++||+..++.. .++|+||||+||||++ +|||||+|||+|||||++|+|+|
T Consensus 377 ~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L~d 440 (887)
T KOG1329|consen 377 EKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPLFD 440 (887)
T ss_pred HHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccccccc
Confidence 8888999999999999999765431 3579999999999996 99999999999999999999999
Q ss_pred ccccccCCCCCCCcccC----CCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhcccCC
Q 003210 398 TLQTLHKDDYHNPTFTG----NTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIP 473 (839)
Q Consensus 398 ~~~~~~~~d~~n~~~~~----~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p 473 (839)
+++++|++||+||++.+ ...++||||||||||+|.||+|+|+++||+||||++...+. .+++.+..+..++
T Consensus 441 ~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----~~~~~~p~L~p~~ 515 (887)
T KOG1329|consen 441 TLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----PYDDSLPLLLPIS 515 (887)
T ss_pred cccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----CCCccceeecChh
Confidence 99999999999999998 67899999999999999999999999999999999875421 1112222222222
Q ss_pred CCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecc
Q 003210 474 GIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQY 553 (839)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqY 553 (839)
.+..++ ...+.+++.|.+|++||++.+++.+ |+...+.++.||+...+|.||++||+++|++|||||||||||
T Consensus 516 ~~~~~~---~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQf 588 (887)
T KOG1329|consen 516 DITGPS---EPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQF 588 (887)
T ss_pred hhcCCC---CccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeee
Confidence 222221 1234567889999999999887654 677777888999998899999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCchhhHHHHHHHHHHHHHHHHHHH
Q 003210 554 FIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP--EG--VPTGAATQRILFWQHKTMQMMYETIY 629 (839)
Q Consensus 554 Fi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~p--eg--~~~~~~~~~i~~~~~~t~~~~~~~~~ 629 (839)
|+++++.|.. ..|.+.++|+++|++|+||++.|+||||||+|| || .|++++.|+||+||++||+|||++++
T Consensus 589 Fi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~ 663 (887)
T KOG1329|consen 589 FIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIY 663 (887)
T ss_pred EEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHH
Confidence 9999887764 567788999999999999999999999999999 88 78999999999999999999999999
Q ss_pred HHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccC
Q 003210 630 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 709 (839)
Q Consensus 630 ~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln 709 (839)
++|++.|++. .+|.+|++|+|+++++.- +++.++|+||||||+|||||+++||||||||
T Consensus 664 ~~Lka~g~d~-~~yi~f~~lr~~g~~e~~--------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANIN 722 (887)
T KOG1329|consen 664 KALKAVGLDP-ADYIDFLGLRCLGNREEQ--------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANIN 722 (887)
T ss_pred HHHHHhcCCc-cccceeeeeeeeeccccc--------------------cccceEEEEEEeeeeEEecCCEEEEeecccc
Confidence 9999999986 457788899999988641 2345689999999999999999999999999
Q ss_pred CCCCCCCCCcceEEeeecchhhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHhhhhhccchhhhhhhh
Q 003210 710 QRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADD 789 (839)
Q Consensus 710 ~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~ehlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (839)
+|||.|+|||||||+++|+.++++.+.+.|++++++||++||+||||+.++.|.+|++++|.+.++++.+++|..+|.++
T Consensus 723 qRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n 802 (887)
T KOG1329|consen 723 QRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARN 802 (887)
T ss_pred hhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccCCCCCccCCCCCCCCCCCCCcccccc-cCCCCCCCC
Q 003210 790 QSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF-FAIQENLTI 839 (839)
Q Consensus 790 ~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 839 (839)
.+...|||.+||+++..+|++.++||.+.|||+.|+|.|.+ .++|++||+
T Consensus 803 ~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 803 TTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999997 699999985
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=3.4e-97 Score=861.84 Aligned_cols=531 Identities=31% Similarity=0.511 Sum_probs=409.7
Q ss_pred CCCCccc----cCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCC
Q 003210 197 GTYFPLR----KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPA 272 (839)
Q Consensus 197 ~~~~p~~----~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~ 272 (839)
.+|+|.+ .||.+++|.||+. +|++|++||++||++|+|++|||+|++||+|+..+.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG~d--------------------yF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~ 380 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDGHA--------------------AFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDH 380 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCHHH--------------------HHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCc
Confidence 5788888 6999999999974 799999999999999999999999999999964444
Q ss_pred CcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhh--cCCCcEEEeccCccCccccccccccc
Q 003210 273 LDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVF--KHSSVKVLLCPRIAGKRHSWAKQKEV 350 (839)
Q Consensus 273 ~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~p~~~~~~~~~~~~~~~ 350 (839)
.+.+|+++|++||++||+||||+||+++.....+ +..+++.+ .++||+|..+|.... ..
T Consensus 381 ~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~----------S~~~k~~L~~lh~gI~V~r~P~~~~---------~~ 441 (1068)
T PLN02866 381 ESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN----------SVYSKRRLLGIHENVKVLRYPDHFS---------SG 441 (1068)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEECccccccccC----------chhhHHHHHHhCCCeEEEecCcccc---------cC
Confidence 7899999999999999999999999976431111 11222222 478999987765311 12
Q ss_pred cceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCccc-cccccCCCCCCCcccCC------------CC
Q 003210 351 GTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRT-LQTLHKDDYHNPTFTGN------------TT 417 (839)
Q Consensus 351 ~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~-~~~~~~~d~~n~~~~~~------------~~ 417 (839)
..+||||||+||||++ +||+||+|||.|||||++|++.|. ...|+++||.||+.... +.
T Consensus 442 ~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~ 513 (1068)
T PLN02866 442 VYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRR 513 (1068)
T ss_pred cccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccccccc
Confidence 3579999999999996 999999999999999999999884 45689999999975331 24
Q ss_pred CCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhhcCCCCccc----C-C--------CC--------------c-------
Q 003210 418 GCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKK----L-K--------SG--------------D------- 463 (839)
Q Consensus 418 ~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~----l-~--------~~--------------~------- 463 (839)
..|||||||+||+|+||+|+||+++|++|||.+++...-.+ + - .+ .
T Consensus 514 ~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1068)
T PLN02866 514 KYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIA 593 (1068)
T ss_pred cCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccccccc
Confidence 56889999999999999999999999999998875431100 0 0 00 0
Q ss_pred --hhh---hhcccCCCCcCCC-------------------------------------CCCC------------------
Q 003210 464 --DAL---LRIERIPGIIGIS-------------------------------------DAPS------------------ 483 (839)
Q Consensus 464 --~~~---~~~~~~p~~~~~~-------------------------------------~~~~------------------ 483 (839)
+.. .....+|.+++.+ ..|.
T Consensus 594 ~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 673 (1068)
T PLN02866 594 RQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSS 673 (1068)
T ss_pred ccccccccccccccccCCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000011110000 0000
Q ss_pred ----------------------------CCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHH
Q 003210 484 ----------------------------VRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTA 535 (839)
Q Consensus 484 ----------------------------~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~a 535 (839)
......+++.+||+||++.||+.. + .+|+||++|
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~SI~~A 735 (1068)
T PLN02866 674 AERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEESIHAA 735 (1068)
T ss_pred cccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHHHHHHH
Confidence 000123458899999999998631 1 147899999
Q ss_pred HHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--C-CC--Cchhh
Q 003210 536 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--G-VP--TGAAT 610 (839)
Q Consensus 536 yl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~pe--g-~~--~~~~~ 610 (839)
|+++|++|+||||||||||++++. .+..+.|+|+.+|+++|++|+++++.|+|+||||++|+ | .+ ++.+.
T Consensus 736 Yi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~sv 810 (1068)
T PLN02866 736 YCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASV 810 (1068)
T ss_pred HHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhH
Confidence 999999999999999999999753 24567999999999999999999999999999999997 3 22 45689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEE
Q 003210 611 QRILFWQHKTMQMMYETIYKALVEV-GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 689 (839)
Q Consensus 611 ~~i~~~~~~t~~~~~~~~~~~L~~~-G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 689 (839)
++||+||++||++|+.+++++|+++ |. +|.+|++|||||+++.+.... + -.+++|||
T Consensus 811 r~Im~~Q~~tI~rG~~Si~~~L~~~~g~----~p~dYisf~~LRn~~~l~~~~------------~------~vteqIYV 868 (1068)
T PLN02866 811 RAIMHWQYRTICRGKNSILHNLYDLLGP----KTHDYISFYGLRAYGRLFEGG------------P------LATSQIYV 868 (1068)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC----CHHHeEeeecccccccccCCC------------c------ccceeeEE
Confidence 9999999999999999999999985 43 477999999999987763110 0 12468999
Q ss_pred eeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhhhhhccC---CCCchhHHHHHHHHHHHhCCCccc---cC
Q 003210 690 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKR---HPYGQIYGYRMSLWAEHLGYIEDC---FG 763 (839)
Q Consensus 690 HSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~---~~~~~~~~lR~~Lw~ehlg~~~~~---~~ 763 (839)
|||+|||||++++|||||||+|||.|++||||+++++|++.....+.+ .+++++++||++||+||||+.++. +.
T Consensus 869 HsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~ 948 (1068)
T PLN02866 869 HSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKII 948 (1068)
T ss_pred EeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhccc
Confidence 999999999999999999999999999999999999999876544433 355789999999999999997643 45
Q ss_pred CCcchhHHHH-hhhhhccchh---------------------hhh----------------------------------h
Q 003210 764 QPETLECVRK-VRSVGENNWQ---------------------QFA----------------------------------A 787 (839)
Q Consensus 764 ~~~~~~~~~~-~~~~~~~~~~---------------------~~~----------------------------------~ 787 (839)
+|.+-+.++. |+..|..|-. ++. .
T Consensus 949 DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~ 1028 (1068)
T PLN02866 949 DPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPM 1028 (1068)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHH
Confidence 7776555543 5666654431 111 1
Q ss_pred hhhccccccccccccccCCCCCccCCCCCCCC
Q 003210 788 DDQSEMRSHLIKYPVEVDRKGKVRPIPGYETF 819 (839)
Q Consensus 788 ~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~ 819 (839)
+++..++||||.||+.|++++.++|.-+..+|
T Consensus 1029 ~~l~~I~G~lV~fPL~Fl~~E~L~p~~~~~e~ 1060 (1068)
T PLN02866 1029 ERLKSVRGHLVSFPLDFMCQEDLRPVFNESEY 1060 (1068)
T ss_pred HHHhhceEEEEechhhhhhhccCCCCcCccce
Confidence 34788999999999999999999988776555
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.6e-49 Score=456.14 Aligned_cols=335 Identities=26% Similarity=0.332 Sum_probs=253.6
Q ss_pred CCCccccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchH
Q 003210 198 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 277 (839)
Q Consensus 198 ~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l 277 (839)
+.+|...||++++|.||++ +|++++++|++||++|+|+.|. ++++. .+..+
T Consensus 132 ~~~p~~~~n~~~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~i~~yi-------~~~d~--~g~~i 182 (509)
T PRK12452 132 GGGPAADRTTTKLLTNGDQ--------------------TFSEILQAIEQAKHHIHIQYYI-------YKSDE--IGTKV 182 (509)
T ss_pred cCCcccCCCEEEEeCCHHH--------------------HHHHHHHHHHHhCCEEEEEEEE-------EeCCc--HHHHH
Confidence 4578999999999999974 8999999999999999999985 45555 67899
Q ss_pred HHHHHhhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceeccc
Q 003210 278 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHH 357 (839)
Q Consensus 278 ~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hH 357 (839)
.++|.+||+|||+||||+ |+.|+... .....+.++++||+|..+.+... ++. ....++|||
T Consensus 183 ~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~n~RnH 243 (509)
T PRK12452 183 RDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETVNYRNH 243 (509)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccccCCCC
Confidence 999999999999999995 99887422 13456678899999987754321 111 124578999
Q ss_pred ceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHH
Q 003210 358 QKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAY 437 (839)
Q Consensus 358 qK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~ 437 (839)
||++|||++ +||+||+|+++++.. . .....+|||+|++++||+|.
T Consensus 244 RKi~VIDg~--------ia~~GG~Ni~d~y~~-~--------------------------~~~~~~WrD~~~~i~Gp~V~ 288 (509)
T PRK12452 244 RKIVIVDGE--------IGFTGGLNVGDEYLG-R--------------------------SKKFPVWRDSHLKVEGKALY 288 (509)
T ss_pred CeEEEEcCC--------EEEeCCcccchhhcC-C--------------------------CCCCCCceEEEEEEECHHHH
Confidence 999999997 999999999996432 1 02357899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccCCCCchhhhhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcc
Q 003210 438 DVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATS 517 (839)
Q Consensus 438 dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~ 517 (839)
+++..|.++|+.+++... ...+.. ... +. ..|... ...+...+|++.+ .|...
T Consensus 289 ~l~~~F~~dW~~~~~~~~---~~~~~~-~~~----~~-----~~~~~~-~~~~~~~~q~~~s--------gp~~~----- 341 (509)
T PRK12452 289 KLQAIFLEDWLYASSGLN---TYSWDP-FMN----RQ-----YFPGKE-ISNAEGAVQIVAS--------GPSSD----- 341 (509)
T ss_pred HHHHHHHHHHHHhhCccc---cccccc-ccc----hh-----cCCCcc-ccCCCeEEEEEeC--------CCCch-----
Confidence 999999999998764310 000000 000 00 001000 0123346888877 22211
Q ss_pred cccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 003210 518 KNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI 597 (839)
Q Consensus 518 ~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivl 597 (839)
+.+|+++|+++|.+||++|||++|||+++. .+..+|..| +.+||+|+|++
T Consensus 342 -----------~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-----------------~l~~aL~~A--a~rGV~Vrii~ 391 (509)
T PRK12452 342 -----------DKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-----------------ETLTLLRLS--AISGIDVRILY 391 (509)
T ss_pred -----------hHHHHHHHHHHHHHhhhEEEEECCccCCCH-----------------HHHHHHHHH--HHcCCEEEEEc
Confidence 358999999999999999999999999864 455556555 46999999999
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhh
Q 003210 598 PMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEA 677 (839)
Q Consensus 598 P~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (839)
|..+ ++.+++|+.+ ++++.|+++|++++. |
T Consensus 392 p~~~--------D~~~~~~a~~-------~~~~~L~~aGv~I~~----y------------------------------- 421 (509)
T PRK12452 392 PGKS--------DSIISDQASQ-------SYFTPLLKAGASIYS----Y------------------------------- 421 (509)
T ss_pred CCCC--------ChHHHHHHHH-------HHHHHHHHcCCEEEE----e-------------------------------
Confidence 9854 4556666554 578999999998752 1
Q ss_pred hcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 678 LSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 678 ~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
...++|+|+|||||++++|||+|||.||+. .|.|+++.++|++.+
T Consensus 422 -------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 -------KDGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred -------cCCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 024899999999999999999999999998 899999999998753
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.4e-48 Score=448.37 Aligned_cols=331 Identities=24% Similarity=0.396 Sum_probs=252.5
Q ss_pred CCCccccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchH
Q 003210 198 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 277 (839)
Q Consensus 198 ~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l 277 (839)
+.+|...||+|++|.||+. +|++|+++|++||++|+|+.|. ++++. .+.++
T Consensus 108 ~~~~~~~~n~v~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~l~~yi-------~~~d~--~g~~i 158 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNGDE--------------------TFQAIIRDIELARHYILMEFYI-------WRPDG--LGDQV 158 (483)
T ss_pred cCCCccCCCEEEEEcCHHH--------------------HHHHHHHHHHHhhcEEEEEEEE-------EccCC--cHHHH
Confidence 4578899999999999974 8999999999999999999985 45555 67899
Q ss_pred HHHHHhhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEec-cCccCccccccccccccceecc
Q 003210 278 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLC-PRIAGKRHSWAKQKEVGTIYTH 356 (839)
Q Consensus 278 ~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-p~~~~~~~~~~~~~~~~~~~~h 356 (839)
.++|.+||+|||+|||| +|+.|+.... .....+.++..|+++..+ |.... ++. ....++|+
T Consensus 159 ~~aL~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~---~~~---~~~~n~Rn 220 (483)
T PRK01642 159 AEALIAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLG---RVF---RRRLDLRN 220 (483)
T ss_pred HHHHHHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCcc---ccc---cccccccc
Confidence 99999999999999999 5998875321 122455678899999887 43211 111 12457899
Q ss_pred cceEEEEecCCCCCCccEEEEEccccCCC-CCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChH
Q 003210 357 HQKTVIVDADAGYNRRKIIAFVGGLDLCD-GRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA 435 (839)
Q Consensus 357 HqK~vVVD~~~~~~~~~~vafvGG~dl~~-~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpa 435 (839)
|+|++|||++ +||+||+|+++ ++.... ...++|||++++++||+
T Consensus 221 HrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~---------------------------~~~~~w~D~~~~i~Gp~ 265 (483)
T PRK01642 221 HRKIVVIDGY--------IAYTGSMNVVDPEYFKQD---------------------------PGVGQWRDTHVRIEGPV 265 (483)
T ss_pred CceEEEEcCC--------EEEeCCcccCCHHHhCCC---------------------------CCCCCcEEEEEEEEcHH
Confidence 9999999997 99999999999 544210 23478999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchh
Q 003210 436 AYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEA 515 (839)
Q Consensus 436 a~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~ 515 (839)
|.+++..|.++|+.++++... . ..|.. ...|. ..++...+|++.| .|..+
T Consensus 266 v~~l~~~F~~dW~~~~~~~~~---~----------~~~~~---~~~~~---~~~~~~~~qi~~s--------gP~~~--- 315 (483)
T PRK01642 266 VTALQLIFAEDWEWETGERIL---P----------PPPDV---LIMPF---EEASGHTVQVIAS--------GPGDP--- 315 (483)
T ss_pred HHHHHHHHHHHHHHHhCcccC---C----------CCccc---ccCCc---cCCCCceEEEEeC--------CCCCh---
Confidence 999999999999987654100 0 00100 00010 1122346888876 23222
Q ss_pred cccccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEE
Q 003210 516 TSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYI 595 (839)
Q Consensus 516 ~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~i 595 (839)
+..++++|+++|.+||++|||++|||+++. .+..+|..| +.+||+|+|
T Consensus 316 -------------~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-----------------~i~~aL~~A--a~rGV~Vri 363 (483)
T PRK01642 316 -------------EETIHQFLLTAIYSARERLWITTPYFVPDE-----------------DLLAALKTA--ALRGVDVRI 363 (483)
T ss_pred -------------hhHHHHHHHHHHHHhccEEEEEcCCcCCCH-----------------HHHHHHHHH--HHcCCEEEE
Confidence 347999999999999999999999999864 455566555 569999999
Q ss_pred EecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCCh
Q 003210 596 VIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTP 675 (839)
Q Consensus 596 vlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 675 (839)
++|..+ ++.+++|+++ ++++.|.++|++++. | .
T Consensus 364 l~p~~~--------d~~~~~~~~~-------~~~~~L~~~Gv~I~~----y---------------~------------- 396 (483)
T PRK01642 364 IIPSKN--------DSLLVFWASR-------AFFTELLEAGVKIYR----Y---------------E------------- 396 (483)
T ss_pred EeCCCC--------CcHHHHHHHH-------HHHHHHHHcCCEEEE----e---------------C-------------
Confidence 999865 3456666554 578899999998752 1 0
Q ss_pred hhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 676 EALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 676 ~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
..++|||+|||||++++|||+|||.||+. .|.|+++.++|+++.
T Consensus 397 ----------~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 397 ----------GGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred ----------CCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 13899999999999999999999999998 899999999998753
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=8.2e-47 Score=421.76 Aligned_cols=326 Identities=20% Similarity=0.280 Sum_probs=243.5
Q ss_pred ccccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHH
Q 003210 201 PLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGEL 280 (839)
Q Consensus 201 p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~l 280 (839)
+++.||+|+++.||++ +|.+++++|++||++|+|++|.| .++. .+..|.++
T Consensus 3 ~~~~gN~v~ll~~G~e--------------------~~~~l~~~I~~Ak~~I~i~~yi~-------~~d~--~g~~l~~a 53 (411)
T PRK11263 3 SWREGNRIQLLENGEQ--------------------YYPRVFEAIAAAQEEILLETFIL-------FEDK--VGKQLHAA 53 (411)
T ss_pred cccCCCeEEEEeCHHH--------------------HHHHHHHHHHHhCCEEEEEEEEE-------ecCc--hHHHHHHH
Confidence 6789999999999974 89999999999999999999864 3333 57899999
Q ss_pred HHhhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceE
Q 003210 281 LRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKT 360 (839)
Q Consensus 281 L~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~ 360 (839)
|++||+|||+||||+ |..++... +....+.|.+.||++..+.+... +.. .....+.++|+|+
T Consensus 54 L~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~----~~~-~~~~~~~R~HrKi 115 (411)
T PRK11263 54 LLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR----LLG-MRTNLFRRMHRKI 115 (411)
T ss_pred HHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc----ccc-cccccccCCcceE
Confidence 999999999999995 88775421 23456677889999987644310 110 1122345999999
Q ss_pred EEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHH
Q 003210 361 VIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVL 440 (839)
Q Consensus 361 vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~ 440 (839)
+|||++ +||+||+|++++++.. ....+|+|++++|+||+|.++.
T Consensus 116 iVIDg~--------~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l~ 159 (411)
T PRK11263 116 VVIDGR--------IAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADIH 159 (411)
T ss_pred EEEcCC--------EEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHHH
Confidence 999997 9999999999865421 1125799999999999999999
Q ss_pred HHHHHHHhhhcCCCCcccCCCCchhhhhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhccccc
Q 003210 441 TNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNL 520 (839)
Q Consensus 441 ~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~ 520 (839)
..|.+.|....... . .......+ + .....+...+|++.+- |..
T Consensus 160 ~~f~~~w~~~~~~~------~----~~~~~~~~--------~--~~~~~g~~~~~~v~~~--------p~~--------- 202 (411)
T PRK11263 160 QFELEALPGQSAAR------R----WWRRHHRA--------E--ENRQPGEAQALLVWRD--------NEE--------- 202 (411)
T ss_pred HHHHHHHhhcccch------h----hhcccccC--------c--ccCCCCCeEEEEEECC--------Ccc---------
Confidence 99999997532110 0 00000000 0 0011233456766541 111
Q ss_pred ccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 003210 521 VCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 600 (839)
Q Consensus 521 ~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~ 600 (839)
....|+++|+.+|.+||+.|||+||||+|+. .+..+|..| +.|||+|+||+|..
T Consensus 203 -------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~l~~aL~~A--a~RGV~V~ii~~~~ 256 (411)
T PRK11263 203 -------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------RLLRALRNA--ARRGVRVRLILQGE 256 (411)
T ss_pred -------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------HHHHHHHHH--HHCCCEEEEEeCCC
Confidence 1247999999999999999999999999863 455566555 46999999999975
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcc
Q 003210 601 PEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSR 680 (839)
Q Consensus 601 peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (839)
| +++++.+..+ .++..|+++|++++. | .
T Consensus 257 ~--------d~~~~~~a~~-------~~~~~Ll~~Gv~I~~----y---------------~------------------ 284 (411)
T PRK11263 257 P--------DMPIVRVGAR-------LLYNYLLKGGVQIYE----Y---------------C------------------ 284 (411)
T ss_pred C--------CcHHHHHHHH-------HHHHHHHHCCCEEEE----e---------------c------------------
Confidence 4 4566666554 478999999998752 1 0
Q ss_pred cCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 681 KSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 681 ~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
..++|||+|||||++++|||+|||.|||. .|.|+++.++|+++.
T Consensus 285 -----~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a 328 (411)
T PRK11263 285 -----RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN 328 (411)
T ss_pred -----CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH
Confidence 13799999999999999999999999998 899999999999864
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=5.7e-36 Score=343.63 Aligned_cols=335 Identities=27% Similarity=0.379 Sum_probs=239.8
Q ss_pred ccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHH
Q 003210 203 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 282 (839)
Q Consensus 203 ~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~ 282 (839)
..++.++++.++.+ .|.++.++|++|+++|+++.| ++.++. .+..+.++|.
T Consensus 57 ~~~~~~~~l~~~~~--------------------~~~~~~~~i~~a~~~I~~~~~-------i~~~d~--~~~~i~~~l~ 107 (438)
T COG1502 57 ISGNGVDLLKDGAD--------------------AFAALIELIEAAKKSIYLQYY-------IWQDDE--LGREILDALI 107 (438)
T ss_pred CCCCceEEecCHHH--------------------HHHHHHHHHHHHhhEEEEEEE-------EEeCCh--hHHHHHHHHH
Confidence 57889999999864 799999999999999999887 445554 6789999999
Q ss_pred hhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCc-EEEeccCccCccccccccccccceecccceEE
Q 003210 283 SKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSV-KVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTV 361 (839)
Q Consensus 283 ~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~v 361 (839)
++|++||+||+|+ |+.++.... .......++++++ .+..+.+...... .....+.++|+|++
T Consensus 108 ~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~r~H~K~~ 170 (438)
T COG1502 108 EAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASPRPL-----RFRRLNRRLHRKIV 170 (438)
T ss_pred HHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCcccccc-----hhhhhhccccceEE
Confidence 9999999999996 887752111 1235566778888 6655533321110 11235689999999
Q ss_pred EEecCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHH
Q 003210 362 IVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLT 441 (839)
Q Consensus 362 VVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~ 441 (839)
|||++ ++|+||.|+.+.++... ...++|+|++++++||+|.++..
T Consensus 171 viD~~--------i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~~ 215 (438)
T COG1502 171 VIDGK--------VAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLAR 215 (438)
T ss_pred EEcCC--------EEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHHH
Confidence 99996 99999999999876421 02358999999999999999999
Q ss_pred HHHHHHhhhcCCCCcccCCCCchhhhhcccCCCCcCCCCCCCCC-CCCCCcceeeEeeeccCcccCCCCCCcchhccccc
Q 003210 442 NFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVR-ENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNL 520 (839)
Q Consensus 442 ~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~ 520 (839)
+|.++|+....... .+. ... .+. .+... ........+|++.+. |......
T Consensus 216 ~f~~~w~~~~~~~~--~~~---~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~--------P~~~~~~----- 266 (438)
T COG1502 216 LFIQDWNLESGSSK--PLL---ALV-----RPP------LQSLSLLPVGRGSTVQVLSSG--------PDKGLGS----- 266 (438)
T ss_pred HHHHHhhhccCcCc--ccc---ccc-----ccc------cccccccccccCcceEEEecC--------Cccccch-----
Confidence 99999998743210 000 000 000 00000 001112235777662 2221100
Q ss_pred ccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 003210 521 VCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 600 (839)
Q Consensus 521 ~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~ 600 (839)
. ...+...|+.+|.+|+++|||++|||+++. ++..+|..+ +.+|++|+|++|..
T Consensus 267 ----~---~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a--~~~Gv~V~ii~~~~ 320 (438)
T COG1502 267 ----E---LIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAA--ARRGVDVRIIIPSL 320 (438)
T ss_pred ----h---hhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHH--HhcCCEEEEEeCCC
Confidence 0 112458999999999999999999999874 455556555 46999999999953
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcc
Q 003210 601 PEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSR 680 (839)
Q Consensus 601 peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (839)
- ..+..+++|..+ .++..|.+.|++++..+
T Consensus 321 ~------~~d~~~~~~~~~-------~~~~~l~~~gv~i~~~~------------------------------------- 350 (438)
T COG1502 321 G------ANDSAIVHAAYR-------AYLKELLEAGVKVYEYP------------------------------------- 350 (438)
T ss_pred C------CCChHHHHHHHH-------HHHHHHHHhCCEEEEec-------------------------------------
Confidence 1 234556555443 58899999998764210
Q ss_pred cCceee-EEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 681 KSGRFM-IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 681 ~~~~~~-iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
. .++|+|+|||||++++|||+|||.||+. .|+|++++|+|+.+
T Consensus 351 -----~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~~ 394 (438)
T COG1502 351 -----GGAFLHSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGLVIEDPEL 394 (438)
T ss_pred -----CCCcceeeEEEEcCCEEEEeCCcCCHhHHH--HhhhheeEEeCHHH
Confidence 1 3899999999999999999999999999 89999999999975
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=2.1e-34 Score=323.84 Aligned_cols=348 Identities=16% Similarity=0.158 Sum_probs=219.4
Q ss_pred cCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHh
Q 003210 204 KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRS 283 (839)
Q Consensus 204 ~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~ 283 (839)
.++.|+++.+|.+ +|++|+++|++|+++|+|++|.| .+|. .|..|.++|.+
T Consensus 23 ~~~~v~~l~~~~~--------------------f~~~Ll~~I~~Ak~~I~l~~y~~-------~~D~--~g~~il~AL~~ 73 (451)
T PRK09428 23 SPDDVETLYSPAD--------------------FRETLLEKIASAKKRIYIVALYL-------EDDE--AGREILDALYQ 73 (451)
T ss_pred CcccEEEEcCHHH--------------------HHHHHHHHHHhcCCeEEEEEEEe-------cCCc--hHHHHHHHHHH
Confidence 5688999999864 89999999999999999999854 4444 67899999998
Q ss_pred h--hcCCCeEEEEEecCCc-cccccccccccccc-cCcHHHHhhhcC--CCcEEEec-cCccCccccccccccccceecc
Q 003210 284 K--SQEGVRVLLLVWDDPT-SRSILGYKMDGVMQ-THDEETRRVFKH--SSVKVLLC-PRIAGKRHSWAKQKEVGTIYTH 356 (839)
Q Consensus 284 k--A~~GV~VriLvwd~~~-s~~~~~~~~~~~~~-~~~~~~~~~~~~--~~v~v~~~-p~~~~~~~~~~~~~~~~~~~~h 356 (839)
| +++||+|+||+ |... ..+..| ... .........++. +|+++.++ ++... ...+.++
T Consensus 74 a~~~~~gv~VrvLv-D~~Ra~Rg~iG-----~~~~~~~~~~~~~l~~~~~gv~v~~f~~p~~~----------~e~~gr~ 137 (451)
T PRK09428 74 AKQQNPELDIKVLV-DWHRAQRGLIG-----AAASNTNADWYCEMAQEYPGVDIPVYGVPVNT----------REALGVL 137 (451)
T ss_pred HHhcCCCcEEEEEE-Ecccccccccc-----cCCCCcCHHHHHHHHHhCCCceEEEcCCcccc----------chhhhhc
Confidence 7 45899999997 8642 111111 100 011233334443 36888776 22210 1235679
Q ss_pred cceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHH
Q 003210 357 HQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAA 436 (839)
Q Consensus 357 HqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa 436 (839)
|+|++|||++ ++|+| .||++.|+... . ....|..++|+||++
T Consensus 138 HrKi~IiD~~--------v~ysG-aNi~d~Yl~~~---------------------------~--~~r~Dry~~i~g~~l 179 (451)
T PRK09428 138 HLKGFIIDDT--------VLYSG-ASLNNVYLHQH---------------------------D--KYRYDRYHLIRNAEL 179 (451)
T ss_pred eeeEEEECCC--------EEEec-ccccHHHhcCC---------------------------c--ccCcceEEEEeCchH
Confidence 9999999997 99987 79999755210 0 112377888999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccCCCC-----c---hhhhhc-ccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCC
Q 003210 437 YDVLTNFEERWRKASKPHGIKKLKSG-----D---DALLRI-ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRG 507 (839)
Q Consensus 437 ~dl~~~F~~rW~~~~~~~~~~~l~~~-----~---~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~ 507 (839)
.++...|++.|..+++.. ..+... . ...... ..... ....+. . ..+...+++......
T Consensus 180 a~~~~~fi~~~~~~~~~v--~~l~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~--~-~~~~~~~~v~p~~g~----- 246 (451)
T PRK09428 180 ADSMVNFIQQNLLNSPAV--NRLDQPNRPKTKEIKNDIRQFRQRLRD---AAYQFQ--G-QANNDELSVTPLVGL----- 246 (451)
T ss_pred HHHHHHHHHHHhhccCcc--ccccccccccchhhHHHHHHHHHHHhh---hccCcc--c-ccCCCCeEEeeeecc-----
Confidence 999999999998765321 001000 0 000000 00000 000000 0 000111233322110
Q ss_pred CCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHc
Q 003210 508 FPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRA 587 (839)
Q Consensus 508 ~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~ 587 (839)
|+ ...+...+..+|.+|++.|+|.||||+++. .+..+|..++
T Consensus 247 ---------------g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a~-- 288 (451)
T PRK09428 247 ---------------GK----KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRLL-- 288 (451)
T ss_pred ---------------CC----chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHHH--
Confidence 11 136788999999999999999999999864 4566666664
Q ss_pred CCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHH----HH---HHHHHHcC---cCCCCCccCceeeeecCcccc
Q 003210 588 HERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYE----TI---YKALVEVG---LEGAFSPQDYLNFFCLGNREV 657 (839)
Q Consensus 588 ~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~----~~---~~~L~~~G---~~~~~~p~~y~~~~~l~~~~~ 657 (839)
.+|++|.||+|..-..+.-..++++++.+.... ..|. .+ +..|.++| ++++.+
T Consensus 289 ~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~p--y~ye~~lr~f~~~~~~li~~G~l~v~i~~~--------------- 351 (451)
T PRK09428 289 RRGKKVEIIVGDKTANDFYIPPDEPFKIIGALP--YLYEINLRRFAKRLQYYIDNGQLNVRLWKD--------------- 351 (451)
T ss_pred hcCCcEEEEcCCcccccCcCCCccHHHHhhhhH--HHHHHhhhhhHHHhhhhhhcCcceEEEEec---------------
Confidence 589999999997532211112344555444321 1111 11 22445555 443210
Q ss_pred ccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 658 IDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
..-.+|+|.|+|||+|++|||+|+|.||+. +|.|+++.|+|+...
T Consensus 352 ---------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~~ 396 (451)
T PRK09428 352 ---------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQE 396 (451)
T ss_pred ---------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChHH
Confidence 013789999999999999999999999999 999999999999743
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=315.87 Aligned_cols=324 Identities=16% Similarity=0.187 Sum_probs=210.0
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCC--CCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVM 313 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~--~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~ 313 (839)
..|+.+.++|.+||++|+|+++.|.| ++. ...|.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~----------- 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL------SDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP----------- 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec------CccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc-----------
Confidence 37899999999999999999986532 221 1246789999999999999999986 753210
Q ss_pred ccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCC
Q 003210 314 QTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 393 (839)
Q Consensus 314 ~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H 393 (839)
....+.|..+||++..+.+.. + ...++|+|++|||++ ++|+||+|+.+ |+.+
T Consensus 88 ----~~~~~~L~~aGv~v~~~~~~~-----~-------~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~--- 139 (424)
T PHA02820 88 ----LKDVELLQMAGVEVRYIDITN-----I-------LGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT--- 139 (424)
T ss_pred ----hhhHHHHHhCCCEEEEEecCC-----C-------CcccceeeEEEECCC--------EEEEeCCcCCh-hhhh---
Confidence 122345778899998765321 0 125799999999997 99999999966 4421
Q ss_pred CCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeee--eChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhccc
Q 003210 394 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI--DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIER 471 (839)
Q Consensus 394 ~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i--~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~ 471 (839)
..+|+++++ +||+|.+|...|.+.|+..++... ..+. ..
T Consensus 140 -----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~----~~~~------~~ 180 (424)
T PHA02820 140 -----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP----YNWK------NF 180 (424)
T ss_pred -----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCC----Cccc------cc
Confidence 124777777 799999999999999997753210 0000 00
Q ss_pred CCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEee
Q 003210 472 IPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIEN 551 (839)
Q Consensus 472 ~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIen 551 (839)
.|...+. ..|. .....+....+++.+. |... ...+ .....++|+.+|.+||++|||++
T Consensus 181 ~~~~~~~-~~p~-~~~~~~~~~~~~~sss-----------P~~~----~~~~-----r~~~~~~~l~~I~~Ak~~I~I~t 238 (424)
T PHA02820 181 YPLYYNT-DHPL-SLNVSGVPHSVFIASA-----------PQQL----CTME-----RTNDLTALLSCIRNASKFVYVSV 238 (424)
T ss_pred ccccccc-CCCc-ccccCCccceEEEeCC-----------Chhh----cCCC-----CCchHHHHHHHHHHHhhEEEEEE
Confidence 0100000 0010 0000111113333331 1100 0000 12357999999999999999999
Q ss_pred cccccccC-------CcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHH
Q 003210 552 QYFIGSSY-------NWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMM 624 (839)
Q Consensus 552 qYFi~~~~-------~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~ 624 (839)
+||+|+.+ .|+ .+..+|.+|. +.|||+|+|++|.|++.. .+.|+.
T Consensus 239 pyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA-~~RGV~VriLvp~~~d~~--------~~~~a~------ 290 (424)
T PHA02820 239 MNFIPIIYSKAGKILFWP-------------YIEDELRRAA-IDRKVSVKLLISCWQRSS--------FIMRNF------ 290 (424)
T ss_pred ccccceeeccCCcccchH-------------HHHHHHHHHH-HhCCCEEEEEEeccCCCC--------ccHHHH------
Confidence 99999822 232 3445554321 369999999999987532 222222
Q ss_pred HHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEe
Q 003210 625 YETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILG 704 (839)
Q Consensus 625 ~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIG 704 (839)
...++.|.++|++++ +.+|.... ++. ......++|||+||||| ++.||
T Consensus 291 -~~~l~~L~~~gv~I~------Vk~y~~p~------~~~------------------~~~~~~f~HaK~~vvD~-~a~IG 338 (424)
T PHA02820 291 -LRSIAMLKSKNINIE------VKLFIVPD------ADP------------------PIPYSRVNHAKYMVTDK-TAYIG 338 (424)
T ss_pred -HHHHHHHhccCceEE------EEEEEcCc------ccc------------------cCCcceeeeeeEEEEcc-cEEEE
Confidence 245778888898763 22221100 000 00013599999999997 69999
Q ss_pred ccccCCCCCCCCCCcceEEeeecc
Q 003210 705 SANINQRSMEGTRDTEIAMGAYQP 728 (839)
Q Consensus 705 SANln~RSm~g~~DsEi~v~i~d~ 728 (839)
|||||.|||. .+.|+++.++++
T Consensus 339 TsN~D~rsf~--~n~ev~~~i~~~ 360 (424)
T PHA02820 339 TSNWTGNYFT--DTCGVSINITPD 360 (424)
T ss_pred CCcCCHHHHh--ccCcEEEEEecC
Confidence 9999999999 899999999986
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=3.4e-33 Score=310.11 Aligned_cols=318 Identities=16% Similarity=0.160 Sum_probs=205.0
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 315 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~ 315 (839)
..|++++++|++||++|+|+.|.| .++++. .+.++.++|++||+|||+||||+ |..++
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~-----~~~~d~--~g~~i~~aL~~aa~rGV~Vril~-D~~~~-------------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCC-----NLRSTP--EGRLILDKLKEAAESGVKVTILV-DEQSG-------------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEe-----cccCCc--hHHHHHHHHHHhccCCCeEEEEe-cCCCC--------------
Confidence 479999999999999999999963 134444 68999999999999999999995 87542
Q ss_pred CcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCC
Q 003210 316 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 395 (839)
Q Consensus 316 ~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~ 395 (839)
....+.|+..||++..++.... +..+..|.|++|||++ +||+||+|++++++.. .
T Consensus 89 --~~~~~~L~~~Gv~v~~~~~~~~-----------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~-~--- 143 (369)
T PHA03003 89 --DKDEEELQSSNINYIKVDIGKL-----------NNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST-I--- 143 (369)
T ss_pred --CccHHHHHHcCCEEEEEecccc-----------CCCCceeeeEEEEcCc--------EEEEecCccCCcccCc-c---
Confidence 1234567888999876532110 0002358899999997 9999999999965421 1
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhcccCCCC
Q 003210 396 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGI 475 (839)
Q Consensus 396 ~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 475 (839)
...+.|+|. ||+|.+|+..|.+.|..++++...... . . ....|..
T Consensus 144 -----------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~---~--~--~~~~~~~ 188 (369)
T PHA03003 144 -----------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRL---C--C--ACCLPVS 188 (369)
T ss_pred -----------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCccccc---c--c--ccCCccc
Confidence 123579883 999999999999999977543200000 0 0 0000000
Q ss_pred cCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecccc
Q 003210 476 IGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFI 555 (839)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi 555 (839)
+......+ ...+++.+ .|..+... ....++++|+++|.+||++|+|+++||+
T Consensus 189 ------~~~~~~~~--~~~~~~~s--------~P~~~~~~------------~~~~~~~~ll~~I~~Ak~~I~I~t~yf~ 240 (369)
T PHA03003 189 ------TKYHINNP--IGGVFFSD--------SPEHLLGY------------SRTLDADVVLHKIKSAKKSIDLELLSLV 240 (369)
T ss_pred ------ccccccCC--CcceEEec--------CChHHcCC------------CCCcCHHHHHHHHHHHhhEEEEEEeccc
Confidence 00000001 11123222 12111000 0124789999999999999999999998
Q ss_pred cccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003210 556 GSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEV 635 (839)
Q Consensus 556 ~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~ 635 (839)
|...... .. .....+..+|.+|. +.|||+|+|++|.+....+ . ...+++.|+++
T Consensus 241 P~~~~d~---~~----~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~~---~---------------~~~~~~~L~~~ 294 (369)
T PHA03003 241 PVIREDD---KT----TYWPDIYNALIRAA-INRGVKVRLLVGSWKKNDV---Y---------------SMASVKSLQAL 294 (369)
T ss_pred cEEeeCC---CC----ccHHHHHHHHHHHH-HcCCCEEEEEEecCCcCCc---h---------------hhhHHHHHHHc
Confidence 7531110 00 00124555555442 2699999999997532110 0 12367789999
Q ss_pred CcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCC
Q 003210 636 GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEG 715 (839)
Q Consensus 636 G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g 715 (839)
|+.... .+.+|. ...|+|+|||||++++|||+||+.||+.
T Consensus 295 G~~~~i----~vri~~-----------------------------------~~~H~K~~VVD~~~a~iGS~N~d~~s~~- 334 (369)
T PHA03003 295 CVGNDL----SVKVFR-----------------------------------IPNNTKLLIVDDEFAHITSANFDGTHYL- 334 (369)
T ss_pred CCCCCc----eEeeec-----------------------------------CCCCceEEEEcCCEEEEeccccCchhhc-
Confidence 954210 011110 0169999999999999999999999998
Q ss_pred CCCcceEEeeecchh
Q 003210 716 TRDTEIAMGAYQPEY 730 (839)
Q Consensus 716 ~~DsEi~v~i~d~~~ 730 (839)
.+.|+++.++++..
T Consensus 335 -~~~e~~~~~~~~~~ 348 (369)
T PHA03003 335 -HHAFVSFNTIDKEL 348 (369)
T ss_pred -cCCCeEEecCChhH
Confidence 78999988877764
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.92 E-value=3.3e-24 Score=210.06 Aligned_cols=142 Identities=55% Similarity=0.893 Sum_probs=124.1
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccc-------C--------CCCCCCCcEEEEEECCEEEEEeeeeeCCC
Q 003210 33 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQ-------M--------NTKITSDPYVTIAVAGAVVGRTFVISNSE 97 (839)
Q Consensus 33 ~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~-------~--------~~~~~sDPYv~v~l~~~~~~rT~vi~~~~ 97 (839)
.+|+||+|+|+|++|++|++||......+++|.+. . ....++||||+|++++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 36899999999999999999997544444444311 0 13445899999999998888999999999
Q ss_pred CCeeeeEEEEEccCCCceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 98 DPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 98 nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
||+|||+|.|++.+..+.|.|+|+|+|..++++||++.+|++++..+...+.|++|.+..+++.+.+++|||+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999988888999999999998899999999999999988889999999988899888889999999995
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.88 E-value=1.1e-23 Score=170.95 Aligned_cols=72 Identities=54% Similarity=1.156 Sum_probs=70.4
Q ss_pred ccccCCCcchhHHHHhhhhhccchhhhhhhhhccccccccccccccCCCCCccCCCCCCCCCCCCCcccccc
Q 003210 759 EDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF 830 (839)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (839)
++.|..|+|++|+++||++|++||++|+++++++++|||++||+.|+.||+|++|||+++||||+|+|+|++
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~ 73 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSK 73 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=6.4e-22 Score=184.16 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=104.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeC-CCCCeeeeEEEEEccCCCce
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~-~~nP~WnE~F~~~v~~~~~~ 115 (839)
.|+|+|+|++|++|++.+ +|+ +||||+|.++++++ ||+++.+ +.||+|||+|.|.+.+....
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~---------------sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~ 63 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR---------------MDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDS 63 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC---------------CCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcE
Confidence 489999999999998877 666 89999999999988 9999876 89999999999999877788
Q ss_pred EEEEEEeecCCC-CcceeEEEEece-eeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 116 VHFFVKDSDVVG-SELIGTVAIPVE-QIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 116 L~~~V~d~d~~~-d~~IG~~~i~l~-~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
|.|+|+|+|.++ |++||.+.|++. .+..|...+.||+|....+++ ..|+|||+|+|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 999999999855 789999999996 577888899999998766654 45799999987
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=1.1e-20 Score=177.04 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=103.8
Q ss_pred EEEEEEEeeC---CCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceE
Q 003210 40 LDIWIYSAKN---LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 116 (839)
Q Consensus 40 L~V~I~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L 116 (839)
|+|+|++|++ |+.+|..|. +||||+|.+++++. ||++++++.||+|||+|.|++.+....|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~---------------sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~~~l 65 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS---------------TDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPCTVL 65 (126)
T ss_pred eEEEEEEeECCccccccccCCC---------------CCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCCCEE
Confidence 8999999999 888888877 89999999999988 9999999999999999999998887899
Q ss_pred EEEEEeecCC-------CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEE
Q 003210 117 HFFVKDSDVV-------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 169 (839)
Q Consensus 117 ~~~V~d~d~~-------~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l 169 (839)
+|+|||++.. +|++||++.++|.++..+...+.||+|.+.++++.+..|+|++
T Consensus 66 ~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 66 TVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999885 7999999999999999888889999999777666667778875
No 17
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.84 E-value=3.3e-20 Score=177.33 Aligned_cols=125 Identities=25% Similarity=0.390 Sum_probs=110.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCce
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~ 115 (839)
+...|.|.|+||++|+.+ .+|||+|.+++++++||+++.++.||.|||+|+|++.+....
T Consensus 9 ~~~sL~v~V~EAk~Lp~~--------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~ 68 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK--------------------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSV 68 (146)
T ss_pred EEEEEEEEEEEccCCCCc--------------------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccE
Confidence 446699999999999864 389999999999999999999999999999999999988889
Q ss_pred EEEEEEeec-CC----CCcceeEEEEeceeeecCccccceeeecCCCCCC-------CCCCceEEEEEEeecccccc
Q 003210 116 VHFFVKDSD-VV----GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP-------CKPGATLTLSIQYTPMERLS 180 (839)
Q Consensus 116 L~~~V~d~d-~~----~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~-------~~~~g~L~l~l~f~p~~~~~ 180 (839)
|+|.|+..+ .. ++++||++.||++++..+...++||+|.+.++++ .+.+++||++++|.++...+
T Consensus 69 l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 69 ITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 999996544 32 5789999999999999998899999999888887 56778999999999876554
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=7.7e-20 Score=172.83 Aligned_cols=117 Identities=20% Similarity=0.343 Sum_probs=101.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccC------CC
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------SA 113 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~------~~ 113 (839)
++|+|++|++|+.++..|. +||||+|.+++++. ||++++++.||+|||+|.|.+.. ..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~---------------~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~ 64 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT---------------NDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFELPGLLSGNGNR 64 (126)
T ss_pred CEEEEEECcCCcCCCCCcC---------------CCceEEEEECCeee-eeeeecCCCCCEeCceEEEEecCcccCCCcC
Confidence 5799999999999887776 89999999998877 99999999999999999999876 35
Q ss_pred ceEEEEEEeecCC-CCcceeEEEEeceeee--cCccccceeeecCCCCCCCCCCceEEEEEE
Q 003210 114 AEVHFFVKDSDVV-GSELIGTVAIPVEQIY--SGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 172 (839)
Q Consensus 114 ~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~--~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~ 172 (839)
..|.|+|||++.. +|++||++.|+++++. .+...+.||+|.+..+++.+..|+|+|+++
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 7899999999985 4899999999999988 566688999998666655556789999875
No 19
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=1.9e-19 Score=168.94 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=106.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 119 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~~ 119 (839)
|+|+|++|++|+..+..+. +||||++.+++....+|+++.++.||+|||+|.|.+.+..+.|.|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT---------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIK 66 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC---------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEE
Confidence 8999999999999988777 8999999999877779999999999999999999998777899999
Q ss_pred EEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 120 VKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 120 V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
|||++.. ++++||++.+++.++..+...+.|++|.++.+. +..|+|+|.++|.|
T Consensus 67 v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 67 VFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred EEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9999985 789999999999999988889999999865542 35679999999986
No 20
>PRK05443 polyphosphate kinase; Provisional
Probab=99.82 E-value=9.4e-19 Score=205.47 Aligned_cols=269 Identities=16% Similarity=0.145 Sum_probs=187.7
Q ss_pred cchhhHHHHHHHHHhccc-----ccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccc
Q 003210 233 VHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGY 307 (839)
Q Consensus 233 ~~~~~f~~l~~aI~~A~~-----~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~ 307 (839)
.|=+.|+.+++.|++|.+ +|.++-|.+. ....+.++|.+||++||+|+||| +... .
T Consensus 345 ~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka-r----- 405 (691)
T PRK05443 345 HPYESFDPVVEFLRQAAADPDVLAIKQTLYRTS------------KDSPIVDALIEAAENGKQVTVLV-ELKA-R----- 405 (691)
T ss_pred CCccCchHHHHHHHHhccCCCeeEEEEEEEEec------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc-c-----
Confidence 344579999999999998 8999988542 23689999999999999999998 4321 0
Q ss_pred ccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCC
Q 003210 308 KMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 387 (839)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r 387 (839)
.....+..+.+.|..+|++|+.-.+. +..|.|+++||++.++ +-+..+++|+.|+....
T Consensus 406 ----fde~~n~~~~~~L~~aGv~V~y~~~~----------------~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~s 464 (691)
T PRK05443 406 ----FDEEANIRWARRLEEAGVHVVYGVVG----------------LKTHAKLALVVRREGG-GLRRYVHLGTGNYNPKT 464 (691)
T ss_pred ----ccHHHHHHHHHHHHHcCCEEEEccCC----------------ccceeEEEEEEeecCC-ceeEEEEEcCCCCCcch
Confidence 11112235566788899999653221 3579999999996433 23348999999998841
Q ss_pred CCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeee-ChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhh
Q 003210 388 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKID-GPAAYDVLTNFEERWRKASKPHGIKKLKSGDDAL 466 (839)
Q Consensus 388 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~-Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~ 466 (839)
...|.|+++... +..+.|+...|...|....... +
T Consensus 465 ---------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~-------~---- 500 (691)
T PRK05443 465 ---------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK-------L---- 500 (691)
T ss_pred ---------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-------c----
Confidence 245789999954 5589999999998876421100 0
Q ss_pred hhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccc-
Q 003210 467 LRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH- 545 (839)
Q Consensus 467 ~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~- 545 (839)
-.++- .|.. ....+.+.+...|.+||+
T Consensus 501 ---------------------------~~l~~---------sP~~----------------~~~~l~~~i~~ei~~Ak~G 528 (691)
T PRK05443 501 ---------------------------RKLLV---------SPFT----------------LRERLLELIDREIANARAG 528 (691)
T ss_pred ---------------------------cEEee---------cCcc----------------HHHHHHHHHHHHHHHHhcC
Confidence 00000 0111 134688999999999999
Q ss_pred ---eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEe----------cCCCCCCCCchhhHH
Q 003210 546 ---FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI----------PMWPEGVPTGAATQR 612 (839)
Q Consensus 546 ---~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivl----------P~~peg~~~~~~~~~ 612 (839)
+|+|.++||. +. .+..+|..| +.+||+|.+++ |..++. .
T Consensus 529 ~~a~I~ik~n~l~-d~-----------------~ii~aL~~A--s~~GV~V~liVRGiC~l~pgipg~sd~--------i 580 (691)
T PRK05443 529 KPARIIAKMNSLV-DP-----------------QIIDALYEA--SQAGVKIDLIVRGICCLRPGVPGLSEN--------I 580 (691)
T ss_pred CCCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCCCCCC--------E
Confidence 9999999965 32 456666666 56899999999 333221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeee
Q 003210 613 ILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSK 692 (839)
Q Consensus 613 i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSK 692 (839)
.+ .+++.+++++ .++++ |-..
T Consensus 581 ~v-----------~s~v~r~Leh-~rIy~----------------------------------------------f~~g- 601 (691)
T PRK05443 581 RV-----------RSIVGRFLEH-SRIYY----------------------------------------------FGNG- 601 (691)
T ss_pred EE-----------HHHHHHHHhc-CEEEE----------------------------------------------EeCC-
Confidence 11 2456666652 33321 1011
Q ss_pred EEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 693 GMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 693 lmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
||.+++||||||+.|||. ++.|+++.++|+..
T Consensus 602 ----d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 602 ----GDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred ----CCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 889999999999999998 99999999999985
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=9.8e-19 Score=169.66 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=104.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeC-CCCCeeeeEEEEEccCC-CceEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAEVH 117 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~-~~nP~WnE~F~~~v~~~-~~~L~ 117 (839)
|+|+|++|++|+.++.+|. +||||+|.+++++. +|+++.+ +.||+|||+|.|.+.++ .+.|.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~---------------sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~ 65 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV---------------PEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELMFVAAEPFEDHLI 65 (150)
T ss_pred EEEEEEEeECCCCCCCCCC---------------CCeEEEEEECCEEe-eeEeccCCCCCCcccCcEEEEecCccCCeEE
Confidence 8999999999999998877 89999999999777 9999877 69999999999999765 36899
Q ss_pred EEEEeecC-CCCcceeEEEEeceeeecC----ccccceeeecCCCC-----CCCCCCceEEEEEEeecc
Q 003210 118 FFVKDSDV-VGSELIGTVAIPVEQIYSG----GKVEGTYPVLNGSG-----KPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 118 ~~V~d~d~-~~d~~IG~~~i~l~~l~~g----~~~~~w~~L~~~~g-----k~~~~~g~L~l~l~f~p~ 176 (839)
|+|+|++. .++++||++.|||.++..+ ...+.||+|.+..| ++.+..|+|+|++.|.+.
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 99999987 4689999999999998743 44689999987655 555667899999999854
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=1.6e-18 Score=163.75 Aligned_cols=120 Identities=19% Similarity=0.328 Sum_probs=101.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC-ceE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 116 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~-~~L 116 (839)
..|+|+|++|++|+..+ . +||||+|.+++.+.+||++. ++.||+|||+|.|.+.... ..+
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~---------------~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l 64 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V---------------PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF 64 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C---------------CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEE
Confidence 45999999999998642 3 79999999998777799984 6899999999999975543 678
Q ss_pred EEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 117 HFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 117 ~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
+|.|+|++. .++++||++.|||.++..+...+.||+|....+++.+..|+|+|+++|.+.
T Consensus 65 ~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 65 TISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 999999987 568999999999999998888899999986544344456899999999863
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.2e-18 Score=163.19 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=101.0
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEE
Q 003210 40 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~ 118 (839)
|.|+|++|++|+.++. .+. +||||+|.++++..++|++++++.||+|||+|.|.+.+....|.|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~---------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~ 66 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM---------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSF 66 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC---------------cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEE
Confidence 7899999999998753 344 899999999888778999999999999999999999876689999
Q ss_pred EEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 119 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 119 ~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
.|||++.. ++++||++.++++++..+...+.||+|... +...+..|+|||+++|
T Consensus 67 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 67 YIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHLELRL 121 (121)
T ss_pred EEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEEEEEC
Confidence 99999984 689999999999999988788999999732 2222346799999875
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=6.8e-19 Score=164.36 Aligned_cols=116 Identities=22% Similarity=0.426 Sum_probs=100.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeC-CCCCeeeeEEEEEccCC-Cce
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAE 115 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~-~~nP~WnE~F~~~v~~~-~~~ 115 (839)
|+|+|+|++|++|++.+..+. +||||+|.+++.+. +|+++.+ +.||+|||+|.|.+... .+.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f~f~v~~~~~~~ 64 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK---------------QDPYCVLRIGGVTK-KTKTDFRGGQHPEWDEELRFEITEDKKPI 64 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC---------------CCceEEEEECCCcc-ccccccCCCCCCccCceEEEEecCCCCCE
Confidence 789999999999999988777 89999999998665 8998765 79999999999999764 478
Q ss_pred EEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 116 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 116 L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
|.|+|||++..++++||++.+++.++..+...+.|++|. .+++ ..|+|+|+|+|
T Consensus 65 l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~-~~~~---~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELT-LKGR---YAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEec-cCCc---EeeEEEEEEEC
Confidence 999999999877999999999999988777789999996 3443 34699999987
No 25
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.79 E-value=5.5e-18 Score=197.78 Aligned_cols=265 Identities=16% Similarity=0.164 Sum_probs=183.7
Q ss_pred chhhHHHHHHHHHhccc-----ccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccc
Q 003210 234 HGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYK 308 (839)
Q Consensus 234 ~~~~f~~l~~aI~~A~~-----~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~ 308 (839)
|=+.|+.+++.|++|.+ +|.|+-|.+. ...++.++|.+||++|++|+|+| +-.... +
T Consensus 337 PY~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkArf---d-- 398 (672)
T TIGR03705 337 PYESFDPVVEFLRQAAEDPDVLAIKQTLYRTS------------KDSPIIDALIEAAENGKEVTVVV-ELKARF---D-- 398 (672)
T ss_pred CccCHHHHHHHHHHHhcCCCceEEEEEEEEec------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhhc---c--
Confidence 34578999999999998 8999988652 23689999999999999999998 411100 0
Q ss_pred cccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCC
Q 003210 309 MDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 388 (839)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~ 388 (839)
...+..+.+.|+.+|++|+.--+ .+..|+|+++||.+.++ .-+..+++|.-|.+..
T Consensus 399 -----e~~ni~wa~~le~aG~~viyg~~----------------~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~-- 454 (672)
T TIGR03705 399 -----EEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK-- 454 (672)
T ss_pred -----chhhHHHHHHHHHcCCEEEEcCC----------------CeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc--
Confidence 01223566678899999976211 24689999999986322 2223677777666553
Q ss_pred CCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeee-eeChHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhh
Q 003210 389 DNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSK-IDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALL 467 (839)
Q Consensus 389 Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~-i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~ 467 (839)
-...|+|+++. .++..+.|+...|...|....... +.. +
T Consensus 455 -------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~~~-l- 494 (672)
T TIGR03705 455 -------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------FKH-L- 494 (672)
T ss_pred -------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------hHH-H-
Confidence 12568999998 888899999999998876321110 000 0
Q ss_pred hcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccc--
Q 003210 468 RIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH-- 545 (839)
Q Consensus 468 ~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~-- 545 (839)
-+ .|.. ....+.+.+.+.|.+||+
T Consensus 495 ------------------------------~~--------~P~~----------------~~~~~~~~i~~ei~~Ak~g~ 520 (672)
T TIGR03705 495 ------------------------------LV--------SPFT----------------LRKRLLELIDREIENARAGK 520 (672)
T ss_pred ------------------------------Hh--------Ccch----------------HHHHHHHHHHHHHHHHHcCC
Confidence 00 1111 134688889999999999
Q ss_pred --eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEe----------cCCCCCCCCchhhHHH
Q 003210 546 --FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI----------PMWPEGVPTGAATQRI 613 (839)
Q Consensus 546 --~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivl----------P~~peg~~~~~~~~~i 613 (839)
+|+|.++||. +. .+..+|..| +.+||+|.+++ |..++. ..
T Consensus 521 ~~~I~ik~n~l~-D~-----------------~ii~aL~~A--s~aGV~V~LivRGiCcL~pgipg~sd~--------i~ 572 (672)
T TIGR03705 521 PARIIAKMNSLV-DP-----------------DLIDALYEA--SQAGVKIDLIVRGICCLRPGVPGLSEN--------IR 572 (672)
T ss_pred CCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCCCCCC--------EE
Confidence 9999999965 32 456666666 56899999999 332211 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeE
Q 003210 614 LFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKG 693 (839)
Q Consensus 614 ~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKl 693 (839)
+ .+++..+++ |+|+
T Consensus 573 v-----------~siv~r~Le-------------------------------------------------------h~rI 586 (672)
T TIGR03705 573 V-----------RSIVGRFLE-------------------------------------------------------HSRI 586 (672)
T ss_pred E-----------EEEhhHhhC-------------------------------------------------------cCEE
Confidence 0 023333333 4455
Q ss_pred EEE---eeeEEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 694 MIV---DDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 694 mIV---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
.+. ||.++.||||||+.|||. ++.|+++.++|+..
T Consensus 587 y~f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 587 YYFGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred EEEeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 444 688999999999999998 99999999999975
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=3.9e-18 Score=161.41 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=101.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC----c
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA----A 114 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~----~ 114 (839)
.|+|+|++|++|++.+..+. +||||+|.+++++. ||++++++.||+|||+|.|.+.+.. .
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~---------------~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~ 64 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS---------------SSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEEe-cceeEcCCCCCccceEEEEEccCHHHccCC
Confidence 38999999999999887766 89999999999887 9999999999999999999987543 5
Q ss_pred eEEEEEEeecCC--CCcceeEEEEeceeee-cCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 115 EVHFFVKDSDVV--GSELIGTVAIPVEQIY-SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 115 ~L~~~V~d~d~~--~d~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
.|.|+|||++.. ++++||++.++++++. .+.....||+|..+ ++..+..|+|+|++.|++
T Consensus 65 ~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 65 VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYITD 127 (127)
T ss_pred eEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEcC
Confidence 799999998875 6899999999999998 46667899999743 322234679999999863
No 27
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.76 E-value=2.1e-18 Score=163.68 Aligned_cols=99 Identities=24% Similarity=0.476 Sum_probs=91.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~ 113 (839)
.++.|.|+|+|++|.+|...|+.++ |||||++.+++++. ||+++++++||+|||+|.|.+.++.
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s---------------SDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ltf~v~d~~ 65 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS---------------SDPYVVLELGNQKL-KTRVVYKNLNPEWNEELTFTVKDPN 65 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC---------------CCCeEEEEECCeee-eeeeecCCCCCcccceEEEEecCCC
Confidence 3678999999999999999998777 89999999999999 9999999999999999999999999
Q ss_pred ceEEEEEEeecC-CCCcceeEEEEeceeeecCcccc
Q 003210 114 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVE 148 (839)
Q Consensus 114 ~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~ 148 (839)
..|+++|||+|. +.||+||.|.|++..+.......
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhh
Confidence 999999999999 56999999999999998765443
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=5.6e-18 Score=158.66 Aligned_cols=112 Identities=21% Similarity=0.348 Sum_probs=97.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~ 118 (839)
|+|+|++|++|+.+ . +||||++.+++.+. ||++++++.||+|||+|.|.+.+. ...|.|
T Consensus 2 L~V~Vi~a~~L~~~----~---------------~Dpyv~v~l~~~~~-kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~ 61 (121)
T cd08378 2 LYVRVVKARGLPAN----S---------------NDPVVEVKLGNYKG-STKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61 (121)
T ss_pred EEEEEEEecCCCcc----c---------------CCCEEEEEECCccc-cccccCCCCCCccceEEEEEcCCCcCCEEEE
Confidence 89999999999876 3 79999999998655 999999999999999999998774 578999
Q ss_pred EEEeecCCCCcceeEEEEeceeeecCc-----cccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 119 FVKDSDVVGSELIGTVAIPVEQIYSGG-----KVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 119 ~V~d~d~~~d~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
+|||++..++++||++.++++++..+. ..+.||+|.+..+ .+..|+|+|+++|
T Consensus 62 ~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 62 SVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred EEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEe
Confidence 999999888999999999999987532 2568999986554 3356799999998
No 29
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=1.2e-17 Score=157.91 Aligned_cols=121 Identities=17% Similarity=0.309 Sum_probs=102.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~ 118 (839)
|.|+|++|++|+. ..+. +||||++++++ ....+|++++++.||+|||+|.|.+......|.|
T Consensus 1 l~v~v~~A~~L~~--~~g~---------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~ 63 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS---------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLF 63 (126)
T ss_pred CEEEEEEecCCCC--CCCC---------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEE
Confidence 6799999999987 4455 89999999974 2334999999999999999999999766778999
Q ss_pred EEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeeccc
Q 003210 119 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 177 (839)
Q Consensus 119 ~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~ 177 (839)
+|||++.. .+++||++.+++.++..+...+.||+|....++..+..|+|++.++|.+.+
T Consensus 64 ~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 64 EVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999984 589999999999999988778899999755443334568999999998765
No 30
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=1.6e-17 Score=156.43 Aligned_cols=120 Identities=28% Similarity=0.459 Sum_probs=100.6
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC-EEEEEeeeeeCCCCCeeeeEEEEEccCCCce
Q 003210 38 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~~-~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~ 115 (839)
|+|+|+|++|++|+..+.. +. +||||++.+++ ...++|++++++.||+|||.|.|.+....+.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~---------------~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~ 66 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGT---------------VDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEP 66 (124)
T ss_pred eEEEEEEEcccCCCcccccCCC---------------CCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCE
Confidence 7899999999999976543 33 79999999988 4666999999999999999999998866789
Q ss_pred EEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 116 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 116 L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
|.|+|+|++.. ++++||++.+++.++..+...+.|...+..++++. |+|+++++|.|
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~---G~i~~~l~~~p 124 (124)
T cd04044 67 LNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV---GELNYDLRFFP 124 (124)
T ss_pred EEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc---eEEEEEEEeCC
Confidence 99999999874 68999999999999997766654433334666654 69999999987
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=2.5e-17 Score=153.99 Aligned_cols=118 Identities=25% Similarity=0.415 Sum_probs=102.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 117 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~ 117 (839)
|+|+|+|++|++|+.++..+. +||||+|.+++... +|++++++.||.|||+|.|++.+....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~~~~~~~~~~l~ 64 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK---------------SDPFCVLELVNARL-QTHTIYKTLNPEWNKIFTFPIKDIHDVLE 64 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC---------------CCcEEEEEECCEee-ecceecCCcCCccCcEEEEEecCcCCEEE
Confidence 789999999999999887776 89999999998876 99999999999999999999987678999
Q ss_pred EEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 118 FFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 118 ~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
|+|+|++. .++++||++.+++.++..+ ...|++|.++.++. +..|+|.|+++|.
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~-~~~G~i~l~~~~~ 119 (119)
T cd08377 65 VTVYDEDKDKKPEFLGKVAIPLLSIKNG--ERKWYALKDKKLRT-RAKGSILLEMDVI 119 (119)
T ss_pred EEEEECCCCCCCceeeEEEEEHHHCCCC--CceEEECcccCCCC-ceeeEEEEEEEeC
Confidence 99999988 5689999999999998755 36799997654433 2467999999873
No 32
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.73 E-value=2.8e-17 Score=155.71 Aligned_cols=120 Identities=23% Similarity=0.437 Sum_probs=100.9
Q ss_pred eEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccC-CCc
Q 003210 38 GNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAA 114 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~-~~~ 114 (839)
|+|+|+|++|++|+..+. .+. +||||+|.+++++. +|++++++.||+|||+|.|++.+ ..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~---------------~dPyv~v~~~~~~~-kT~~~~~t~~P~Wne~f~~~~~~~~~~ 64 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK---------------SDPYAILSVGAQRF-KTQTIPNTLNPKWNYWCEFPIFSAQNQ 64 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC---------------cCCeEEEEECCEEE-ecceecCCcCCccCCcEEEEecCCCCC
Confidence 789999999999998887 666 89999999988776 99999999999999999999987 458
Q ss_pred eEEEEEEeecCC-CCcceeEEEEeceeeec---CccccceeeecCCC-CCCCCCCceEEEEEEe
Q 003210 115 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGS-GKPCKPGATLTLSIQY 173 (839)
Q Consensus 115 ~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~---g~~~~~w~~L~~~~-gk~~~~~g~L~l~l~f 173 (839)
.|.|+|||++.. ++++||++.+++.++.. ....+.||+|.+.. ++.....|+|+|+++|
T Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 65 LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999885 68999999999999873 33468899997552 2223356799998874
No 33
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=2.7e-17 Score=154.12 Aligned_cols=114 Identities=25% Similarity=0.448 Sum_probs=98.3
Q ss_pred eEEEEEEEEeeCCCCCCCC------CccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 38 GNLDIWIYSAKNLPNMDMF------HKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~------~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
|+|+|+|++|++|+.++.. +. +||||+|.++++.. +|++++++.||+|||+|.|.+..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~---------------~dPyv~v~~~~~~~-kT~~~~~t~~P~W~e~f~~~v~~ 64 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGK---------------SDPYVIVRVGAQTF-KSKVIKENLNPKWNEVYEAVVDE 64 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCC---------------cCCEEEEEECCEeE-EccccCCCCCCcccceEEEEeCC
Confidence 6899999999999988753 23 89999999998655 99999999999999999999875
Q ss_pred -CCceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 112 -SAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 112 -~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
....|.|+|+|++..++++||++.+++.++..++..+.||+|.+. ..|+|++.++|
T Consensus 65 ~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 65 VPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred CCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 357999999999988889999999999999987778999999632 23589998875
No 34
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=4.6e-17 Score=151.53 Aligned_cols=112 Identities=25% Similarity=0.349 Sum_probs=99.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~ 118 (839)
|+|+|++|++|+..+..+. +||||++.+++++. +|++++++.||+|||+|.|.+... ...|.|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v 65 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL---------------SDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65 (116)
T ss_pred EEEEEEEEECCCCCCCCCC---------------CCcEEEEEECCEeE-ecccccCCCCCceeEEEEEEecCCCCCEEEE
Confidence 7999999999999987776 89999999988776 999999999999999999998766 578999
Q ss_pred EEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 119 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 119 ~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
+|||++.. ++++||++.+++.++..+...+.|++|.+. .|+|++.+.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 66 EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 99999984 689999999999999988888999999632 25888888874
No 35
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=6.4e-17 Score=154.17 Aligned_cols=125 Identities=21% Similarity=0.333 Sum_probs=100.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcc-ccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCc
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKT-LGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAA 114 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~-~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~ 114 (839)
..|+|+|+|++|++|++.+..+.. ..+. ....+||||++.++++++.+|++++++.||+|||+|.|.+. ..+
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~ 74 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKK------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGR 74 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhccccc------CccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCC
Confidence 568999999999999988763100 0000 00117999999999988889999999999999999999997 457
Q ss_pred eEEEEEEeecC-CCCcceeEEEEeceeeec--CccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 115 EVHFFVKDSDV-VGSELIGTVAIPVEQIYS--GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 115 ~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~--g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
.|.|.|+|++. ..+++||++.++|+++.. +...+.|++|. + .|+|+++++|..
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~-------~G~l~l~~~~~~ 130 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-P-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-C-------CcEEEEEEEEec
Confidence 89999999887 457899999999999997 56689999995 2 358999998864
No 36
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=6e-17 Score=151.89 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=99.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 119 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~~ 119 (839)
|.|+|++|++|++++..|. +||||+|.+++..++||++++++.||+|||.|.|.+.+....|.|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS---------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFY 66 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC---------------CCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEE
Confidence 8999999999999998877 8999999999887789999999999999999999998777899999
Q ss_pred EEeecCC-CCcceeEEEEeceeeecC-ccccceeeecCCCCCCCCCCceEEEEEE
Q 003210 120 VKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQ 172 (839)
Q Consensus 120 V~d~d~~-~d~~IG~~~i~l~~l~~g-~~~~~w~~L~~~~gk~~~~~g~L~l~l~ 172 (839)
|||++.. .+++||++.+++.++..+ ...+.|++|...++. .+..|+|++.++
T Consensus 67 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 67 VLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred EEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 9999985 589999999999888754 347899999643222 123468888765
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=7.2e-17 Score=151.87 Aligned_cols=117 Identities=22% Similarity=0.366 Sum_probs=98.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~ 118 (839)
|+|+|++|++|+.++..+. +||||+|.+++... +|++++++.||+|||+|.|.+.+. ...|.|
T Consensus 2 L~v~vi~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~ 65 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGT---------------SDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65 (123)
T ss_pred EEEEEEEeeCCCCCCCCCC---------------cCceEEEEECCEEE-eceeecCCCCCccCcEEEEEcCCCCCCEEEE
Confidence 8999999999999887766 89999999988776 999999999999999999998765 478999
Q ss_pred EEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCC---CCCCCceEEEEEE
Q 003210 119 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK---PCKPGATLTLSIQ 172 (839)
Q Consensus 119 ~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk---~~~~~g~L~l~l~ 172 (839)
+|||++.. .+++||.+.+++.++..+...+.||.|.....+ ..+..|.|+|.++
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 66 EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 99999874 588999999999999877778899999753222 2234568877663
No 38
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.2e-16 Score=151.00 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=102.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceE
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 116 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L 116 (839)
++.|+|+|++|++|+..+..+. +||||++.+++++. +|++++++.||+|||+|.|.+......|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~---------------~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l 65 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG---------------ADPYVIIKCEGESV-RSPVQKDTLSPEFDTQAIFYRKKPRSPI 65 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC---------------cCccEEEEECCEEE-EeCccCCCCCCcccceEEEEecCCCCEE
Confidence 5679999999999999888777 89999999999887 9999999999999999999988888899
Q ss_pred EEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCC-CCCCCCceEEEEEEeecc
Q 003210 117 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG-KPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 117 ~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~g-k~~~~~g~L~l~l~f~p~ 176 (839)
.|+|||++..++++||.+.+++.++. .....|++|..... ...+..|.|.+++++.|.
T Consensus 66 ~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 66 KIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred EEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999999888999999999998754 34557888853211 122345799999987653
No 39
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=8.3e-17 Score=153.60 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=99.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~------~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
+|+|+|++|++|+.++..+. +||||+|.+.+. ...+|++++++.||+|||+|.|.+...
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~---------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 65 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA---------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR 65 (133)
T ss_pred CEEEEEEEeECCCcccCCCC---------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC
Confidence 48999999999999988776 899999999764 234999999999999999999998776
Q ss_pred CceEEEEEEeecCC-CCcceeEEEEeceeeecCcc------ccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 113 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK------VEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 113 ~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~------~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
...|.|+|+|++.. ++++||++.+++.++..+.. .+.||+|....++ .+..|+|+|++.|.
T Consensus 66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 77899999999985 58999999999999986543 4589999743222 23467999999984
No 40
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.1e-16 Score=151.57 Aligned_cols=117 Identities=33% Similarity=0.592 Sum_probs=101.9
Q ss_pred EEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEE
Q 003210 44 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFV 120 (839)
Q Consensus 44 I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V 120 (839)
|++|++|++ ..+. +||||+|.+++.+. +|++++++.||+|||+|.|.+.+. .+.|.|+|
T Consensus 2 vi~a~~L~~--~~g~---------------~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGK---------------GDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCC---------------CCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEE
Confidence 789999997 5555 89999999998876 999999999999999999999764 57899999
Q ss_pred EeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecccccc
Q 003210 121 KDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 180 (839)
Q Consensus 121 ~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~~ 180 (839)
||++.. ++++||++.++++++..+.....|++|.++++++. .++|+++++|.|.+.+.
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GATISLEVSYQPPDGAV 122 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEEEEEEEEEeCCCCcc
Confidence 999884 58999999999999998888899999987776653 46999999999987653
No 41
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=8.3e-17 Score=150.52 Aligned_cols=113 Identities=27% Similarity=0.400 Sum_probs=95.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC-CceE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 116 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L 116 (839)
|+|+|++|++|++.+..+. +||||++.+.+ ....||++++++.||+|||+|.|.+... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLST---------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCC---------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEE
Confidence 7899999999998887666 89999999963 3445999999999999999999998755 3579
Q ss_pred EEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 117 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 117 ~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
.|+|||+|..++++||++.+++.++..|...+.|++|.. ++ .|+|++.+.+
T Consensus 67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEEEEEe
Confidence 999999998888999999999999998888999999952 22 2467766653
No 42
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=8.1e-17 Score=149.61 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=85.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC-----C-EEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-----G-AVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~-----~-~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
|+|+|++|++|+.++. |. +||||+|++- . .+..+|+++.+++||+|||+|.|.+...
T Consensus 2 L~V~Vi~A~~L~~~d~-g~---------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~ 65 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GM---------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNED 65 (120)
T ss_pred EEEEEEECcCCCcccC-CC---------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcC
Confidence 8999999999998774 65 8999999983 2 2334899999999999999999998643
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|.|+|+|.. ++++||++.+|+.++..++..+.|++|.
T Consensus 66 ~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 66 DPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 25689999999875 4889999999999999888889999995
No 43
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=9.2e-17 Score=146.68 Aligned_cols=97 Identities=25% Similarity=0.509 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~ 118 (839)
|.|+|++|++|+..+..+. +||||+|++++++. +|++++++.||+|||+|.|.+.++ .+.|.|
T Consensus 2 L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v 65 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE---------------PSPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFLVRNPENQELEI 65 (105)
T ss_pred EEEEEeeecCCCCcccCCC---------------CCcEEEEEECCEEE-eCccccCCCCCcccceEEEEeCCCCCCEEEE
Confidence 8999999999998877666 89999999999666 999999999999999999999875 578999
Q ss_pred EEEeecCCCCcceeEEEEeceeeecCc--cccceeeec
Q 003210 119 FVKDSDVVGSELIGTVAIPVEQIYSGG--KVEGTYPVL 154 (839)
Q Consensus 119 ~V~d~d~~~d~~IG~~~i~l~~l~~g~--~~~~w~~L~ 154 (839)
+|+|++. +++||++.++|.++.... ..+.||+|.
T Consensus 66 ~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 66 EVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999887 889999999999998653 478999996
No 44
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.70 E-value=1.9e-16 Score=151.27 Aligned_cols=115 Identities=21% Similarity=0.347 Sum_probs=96.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-Cce
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 115 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~ 115 (839)
-|.|+|+|++|++|++++..+. +||||++.++++.. +|++++++.||.|||+|.|.+.+. ...
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~---------------~DPYv~v~~~~~~~-kT~vi~~t~nP~Wne~f~f~v~~~~~~~ 77 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGK---------------SDPYCEVSMGSQEH-KTKVVSDTLNPKWNSSMQFFVKDLEQDV 77 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEee-eccccCCCCCCccCceEEEEecCccCCE
Confidence 3889999999999999988777 89999999998876 999999999999999999998765 368
Q ss_pred EEEEEEeecCC-CCcceeEEEEeceeeec-----CccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 116 VHFFVKDSDVV-GSELIGTVAIPVEQIYS-----GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 116 L~~~V~d~d~~-~d~~IG~~~i~l~~l~~-----g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
|.|+|||++.. +|++||++.+++.++.. ......|+++. ++ ..|+|+|++.|
T Consensus 78 l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~~g~i~l~~~~ 135 (136)
T cd08375 78 LCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---PTGEVVVKLDL 135 (136)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---cceeEEEEEEe
Confidence 99999999974 58999999999999885 22234566652 33 23599999886
No 45
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.69 E-value=9.9e-17 Score=150.46 Aligned_cols=102 Identities=25% Similarity=0.396 Sum_probs=87.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEc-c
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV-A 110 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v-~ 110 (839)
..|.|.|+|++|++|+.++ .+. +||||+|.+.. ....||++++++.||+|||+|.|.+ .
T Consensus 11 ~~~~L~V~Vi~A~~L~~~~-~~~---------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~ 74 (122)
T cd08381 11 KNGTLFVMVMHAKNLPLLD-GSD---------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLP 74 (122)
T ss_pred eCCEEEEEEEEeeCCCCCC-CCC---------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCC
Confidence 3688999999999999998 666 89999999952 2234999999999999999999987 3
Q ss_pred C---CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeee
Q 003210 111 H---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 111 ~---~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
. ....|.|+|||+|.. ++++||++.|+|.++..++..+.||+|
T Consensus 75 ~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 75 VEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred hHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 2 246899999999984 588999999999999988778999987
No 46
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2e-16 Score=146.36 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=86.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 117 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~ 117 (839)
|.|.|+|++|++|+.++ . .||||+|.+++++. +|+++++ .||+|||+|.|.+......|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~---------------~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~F~~~~~~~~L~ 61 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K---------------FNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFMFEINRLDLGLV 61 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C---------------CCCeEEEEECCEEe-EeeECCC-CCCceeeEEEEEEcCCCCEEE
Confidence 67999999999997654 2 59999999999887 9999977 599999999999988877899
Q ss_pred EEEEeecCCCCcceeEEEEeceeeecCccc--cceeeec
Q 003210 118 FFVKDSDVVGSELIGTVAIPVEQIYSGGKV--EGTYPVL 154 (839)
Q Consensus 118 ~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~--~~w~~L~ 154 (839)
|+|||+|.++|++||++.|||.++..+... ..||+|.
T Consensus 62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999999999999999999966554 7899996
No 47
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.2e-16 Score=147.24 Aligned_cols=100 Identities=25% Similarity=0.486 Sum_probs=87.4
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCee-eeEEEEEccCC---Cc
Q 003210 40 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVW-QQHFYVPVAHS---AA 114 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~W-nE~F~~~v~~~---~~ 114 (839)
|+|+|++|++|+.++. .+. +||||+|.+++++. ||++++++.||+| ||+|.|.+.+. .+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~~-kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL---------------TDAFVEVKFGSTTY-KTDVVKKSLNPVWNSEWFRFEVDDEELQDE 64 (110)
T ss_pred CEEEEEEEECCCccccCCCC---------------CCceEEEEECCeeE-ecceecCCCCCcccCcEEEEEcChHHcCCC
Confidence 6899999999998874 455 89999999998655 9999999999999 99999998764 36
Q ss_pred eEEEEEEeecCC-CCcceeEEEEeceeeec---CccccceeeecC
Q 003210 115 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLN 155 (839)
Q Consensus 115 ~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~---g~~~~~w~~L~~ 155 (839)
.|.|+|||++.. ++++||++.+++.++.. +...++||+|++
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999984 57899999999999986 445899999985
No 48
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=2.2e-16 Score=151.50 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=90.1
Q ss_pred eeceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEEeeeeeCCCCCeeeeEEEEEc
Q 003210 35 LLHGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPV 109 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~~nP~WnE~F~~~v 109 (839)
...|.|.|+|++|++|+.++ ..+. +||||++++. +. ...||+++++++||+|||+|.|.+
T Consensus 26 y~~~~L~V~Vi~ArnL~~~~~~~g~---------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 26 DKKGQLEVEVIRARGLVQKPGSKVL---------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred eCCCEEEEEEEEeeCCCcccCCCCC---------------cCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 45689999999999999764 4455 8999999993 32 244999999999999999999999
Q ss_pred cCCCceEEEEEE-eecC-CCCcceeEEEEeceeeecCccccceeeecCC
Q 003210 110 AHSAAEVHFFVK-DSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 110 ~~~~~~L~~~V~-d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
......|.|+|| |++. .++++||++.|+|+++..+.....||+|..+
T Consensus 91 ~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 91 SPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 856688999999 5665 4588999999999999877778899999743
No 49
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.68 E-value=8.7e-17 Score=150.02 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=88.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
..++.|.|+|++|++|++++ .+. +||||+|++.. ....||++++++.||+|||+|.|.+.
T Consensus 9 ~~~~~L~V~Vi~ar~L~~~~-~g~---------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~ 72 (119)
T cd08685 9 GQNRKLTLHVLEAKGLRSTN-SGT---------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVN 72 (119)
T ss_pred EcCCEEEEEEEEEECCCCCC-CCC---------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcC
Confidence 35788999999999999988 555 89999999953 33449999999999999999999986
Q ss_pred CC--CceEEEEEEeecCC--CCcceeEEEEeceeeecCccccceeee
Q 003210 111 HS--AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 111 ~~--~~~L~~~V~d~d~~--~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
+. ...|.|+|||++.. ++++||.+.||+.++..+...++||.|
T Consensus 73 ~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 73 ERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred hHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 54 35789999998873 478999999999999988778999986
No 50
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.68 E-value=1.5e-16 Score=145.92 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=83.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~---~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
.|.|+|+|++|++|+ . .+. +||||+|++.. .+..+|+++++++||+|||+|.|.+...
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~---------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~ 74 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAG---------------CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE 74 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCC---------------CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence 578999999999998 2 344 89999999953 2344999999999999999999998754
Q ss_pred --CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeee
Q 003210 113 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 113 --~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
...|.|+|+|+|. +++++||++.+++.++..+...+.|-.|
T Consensus 75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3679999999999 4689999999999998766667778654
No 51
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4e-16 Score=145.92 Aligned_cols=104 Identities=35% Similarity=0.593 Sum_probs=93.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 117 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~ 117 (839)
|.|+|+|++|++|++.+..+. +||||+|.+++...++|++++++.||+|||+|.|++.+..+.|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~ 65 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK---------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKIT 65 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC---------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEE
Confidence 689999999999999887776 89999999988777799999999999999999999988878999
Q ss_pred EEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCC
Q 003210 118 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 157 (839)
Q Consensus 118 ~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~ 157 (839)
|+|+|++.. .+++||++.+++.++..+ ..+.||.|++.+
T Consensus 66 v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 66 LEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999999985 578999999999999966 678999998655
No 52
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=4.8e-16 Score=146.18 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=93.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 119 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~~ 119 (839)
|+|+|++|++|+.++.++. +||||++.+++...+||++++++.||+|||+|.|++.. .+.|.|+
T Consensus 2 l~v~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL---------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQ 65 (123)
T ss_pred eEEEEEEecCCCccCCCCC---------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEE
Confidence 8999999999999887776 89999999976555699999999999999999999975 6799999
Q ss_pred EEeecCCC---CcceeEEEEeceeeecCc-cccceeeecCCCCCC-CCCCceEEEEE
Q 003210 120 VKDSDVVG---SELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKP-CKPGATLTLSI 171 (839)
Q Consensus 120 V~d~d~~~---d~~IG~~~i~l~~l~~g~-~~~~w~~L~~~~gk~-~~~~g~L~l~l 171 (839)
|||++..+ +++||++.+++.++.... ....|++|....... ....|+|.+++
T Consensus 66 V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 66 VFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99998754 579999999999987543 346799996433221 11245776665
No 53
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=2.7e-16 Score=152.09 Aligned_cols=112 Identities=29% Similarity=0.435 Sum_probs=85.3
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccc-CCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEcc--CCCce
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQ-MNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVA--HSAAE 115 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~-~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~--~~~~~ 115 (839)
+|.|+|++|++|+.+|..+.. +.+.+. ......+||||+|.+++++. ||++++++.||+|||+|.|++. +....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~--~~~~~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMA--NVKKAFLGEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhc--cceeccccCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 389999999999999865420 000000 01122379999999999987 9999999999999999999864 34578
Q ss_pred EEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 116 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 116 L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
|.|+|+|+|.. +|++||++.+++.++... ..++|+|++
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~-~~~~~lp~~ 116 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNS-GDEGFLPTF 116 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccC-CccccCCcc
Confidence 99999999985 799999999999998864 344444443
No 54
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.66 E-value=4.3e-16 Score=150.41 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=84.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEEeeeeeCCCCCeeeeEEEEEcc-----
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVA----- 110 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~----~~~rT~vi~~~~nP~WnE~F~~~v~----- 110 (839)
|.|+|++|++|+. ..|. +||||+|.+.+. ...+|++++++.||+|||+|.|.+.
T Consensus 2 L~V~Vi~ArnL~~--~~g~---------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~ 64 (148)
T cd04010 2 LSVRVIECSDLAL--KNGT---------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSP 64 (148)
T ss_pred EEEEEEeCcCCCC--CCCC---------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccc
Confidence 8999999999987 3455 899999999752 2339999999999999999999984
Q ss_pred ----------CC-CceEEEEEEeecC-CCCcceeEEEEeceeeecC-ccccceeeecCCCC
Q 003210 111 ----------HS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSG 158 (839)
Q Consensus 111 ----------~~-~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g-~~~~~w~~L~~~~g 158 (839)
+. ...|.|+|||++. ..+++||++.|++.++..+ ...+.||+|.....
T Consensus 65 ~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 65 EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 11 2568999999987 4688999999999999976 56789999975543
No 55
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.66 E-value=8.5e-16 Score=145.34 Aligned_cols=114 Identities=26% Similarity=0.412 Sum_probs=95.4
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEE
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 118 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~ 118 (839)
.|+|+|++|++|+..+..+. +||||+|.+++... +|+++.++.||+|||+|.|.+......|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~~~~~~~-kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i 65 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT---------------SDPYVTVQVGKTKK-RTKTIPQNLNPVWNEKFHFECHNSSDRIKV 65 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC---------------cCcEEEEEECCEee-ecceecCCCCCccceEEEEEecCCCCEEEE
Confidence 48999999999999988776 89999999987765 999999999999999999998776778999
Q ss_pred EEEeecC------------CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEE
Q 003210 119 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 171 (839)
Q Consensus 119 ~V~d~d~------------~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l 171 (839)
+|||+|. ..+++||++.+++.++. +..+.||+|....++ ....|+|.|++
T Consensus 66 ~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~-~~~~G~i~~~~ 127 (127)
T cd04027 66 RVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDK-SAVSGAIRLHI 127 (127)
T ss_pred EEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCC-CcEeEEEEEEC
Confidence 9999985 25889999999999875 345789999754433 23466888764
No 56
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.66 E-value=3.3e-16 Score=147.79 Aligned_cols=112 Identities=26% Similarity=0.432 Sum_probs=95.9
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEEEeeeee-CCCCCeeeeEEEEEccCC----
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVIS-NSEDPVWQQHFYVPVAHS---- 112 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-~~~~rT~vi~-~~~nP~WnE~F~~~v~~~---- 112 (839)
+|+|+|++|++|+..+..+. +||||+|++++ ++. +|+++. ++.||+|||+|.|.+.+.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~---------------~dpYv~v~~~~~~~~-~T~~~~~~~~~P~Wne~f~f~v~~~~~~~ 64 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK---------------MKVYAVVWIDPSHKQ-STPVDRDGGTNPTWNETLRFPLDERLLQQ 64 (125)
T ss_pred CEEEEEEEcccCCCCCcccC---------------CceEEEEEECCCccc-ccccccCCCCCCCCCCEEEEEcChHhccc
Confidence 58999999999998887766 89999999988 555 999986 489999999999999776
Q ss_pred -CceEEEEEEeecC-CCCcceeEEEEeceeeecCccc-----cceeeecCCCCCCCCCCceEEE
Q 003210 113 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV-----EGTYPVLNGSGKPCKPGATLTL 169 (839)
Q Consensus 113 -~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~-----~~w~~L~~~~gk~~~~~g~L~l 169 (839)
...|.|+|+|++. .++++||++.+++.++..+... ..||+|..++|++. |.|++
T Consensus 65 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~---G~~~~ 125 (125)
T cd04051 65 GRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ---GVLNF 125 (125)
T ss_pred CccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC---eEEeC
Confidence 5789999999987 6688999999999999976553 68999998888765 37664
No 57
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=4.5e-16 Score=146.64 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEEEeeeeeCCCCCeeeeEEEEEccCC--
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-- 112 (839)
.|.|.|+|++|++|+.++..+. +||||+|.+ ++...+||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT---------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 4789999999999999887776 899999999 434556999999999999999999998654
Q ss_pred -CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 -~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||++.. ++++||++.++++++..++..+.||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 36899999999885 5889999999999999777889999984
No 58
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=7.7e-16 Score=145.06 Aligned_cols=103 Identities=21% Similarity=0.353 Sum_probs=87.7
Q ss_pred eceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 36 LHGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
..|.|.|+|++|++|+..+.. +. +||||+|.+.. ....||++++++.||+|||+|.|.+.
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 77 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR---------------SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSIS 77 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC---------------CCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECC
Confidence 457899999999999987653 44 89999999842 22349999999999999999999986
Q ss_pred CC---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeee
Q 003210 111 HS---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 111 ~~---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
.. ...|.|+|||++. .++++||++.|++.++...+..+.|++|
T Consensus 78 ~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 78 HSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 53 4679999999997 5688999999999999988888999998
No 59
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=8.7e-16 Score=140.67 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=80.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC--Cce
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--AAE 115 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~--~~~ 115 (839)
|+|.|+|++|++|+..+.... ...++||||+|++++... ||++++++.||+|||+|.|.+.+. ...
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-----------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~f~v~~~~~~~~ 68 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-----------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLAFEVYPHEKNFD 68 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-----------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEEEEEeCccCCCE
Confidence 789999999999998764321 001179999999987766 999999999999999999998654 357
Q ss_pred EEEEEEeecC-CCCcceeEEEEeceeeecCcc
Q 003210 116 VHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK 146 (839)
Q Consensus 116 L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~ 146 (839)
|.|+|||+|. ..+++||++.++|++|..+..
T Consensus 69 L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 69 IQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred EEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 9999999997 468999999999999987644
No 60
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=2.6e-15 Score=143.68 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=96.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC------
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------ 112 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~------ 112 (839)
.|+|+|++|++|+.++..+. +||||+|.+++.+. +|++++++.||+|||.|.|.+...
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~ 65 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL---------------SDPFARVSFLNQSQ-ETEVIKETLSPTWDQTLIFDEVELYGSPEE 65 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC---------------CCCEEEEEECCeee-EeeeEcCCCCCccCcEEEEeeeeccCChHH
Confidence 38999999999999998877 89999999998776 999999999999999999975321
Q ss_pred ----CceEEEEEEeecCC-CCcceeEEEE-eceeeec---CccccceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 113 ----AAEVHFFVKDSDVV-GSELIGTVAI-PVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 113 ----~~~L~~~V~d~d~~-~d~~IG~~~i-~l~~l~~---g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
...|.|+|||+|.. .|++||++.+ |+..+.. +.....|++|. +.++ ..|+|.|.+++.++
T Consensus 66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQ---SAGELLAAFELIEV 134 (135)
T ss_pred hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCC---chhheeEEeEEEEe
Confidence 25799999999984 5789999997 5554442 34577999996 4443 34699999998875
No 61
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=9.5e-16 Score=144.44 Aligned_cols=104 Identities=30% Similarity=0.345 Sum_probs=90.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
..|+|+|+|++|++|+.++..+. +||||+|.+.. .+..+|++++++.||+|||+|.|.+...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT---------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSE 78 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC---------------CCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHH
Confidence 34789999999999999887776 89999999843 3455999999999999999999998653
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||++.. .+++||++.++++++..+...+.|++|.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 36899999999884 5789999999999998888889999984
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.64 E-value=7.4e-16 Score=142.17 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=84.9
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC--
Q 003210 38 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 112 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~-- 112 (839)
|+|+|+|++|++|+..+.. +. +||||+|.+.+ ....+|++++++.||+|||+|.|.+...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~ 65 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS---------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEV 65 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC---------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhc
Confidence 7899999999999998876 66 89999999843 3445999999999999999999987653
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||+|.. ++++||++.+++.++.. ..+|+++.
T Consensus 66 ~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 66 KAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred cCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 46899999999985 58999999999999983 35788874
No 63
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.64 E-value=6e-16 Score=145.91 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=87.4
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEEC--C--EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~--~--~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.+.|.|+|++|++|+.++.. +. +||||+|.+. + ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~---------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~ 78 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR---------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER 78 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC---------------CCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCH
Confidence 36799999999999998865 55 8999999994 2 223499999999999999999999864
Q ss_pred C---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeec
Q 003210 112 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
. ...|.|+|||++. .++++||++.|+|.++..++....||+|.
T Consensus 79 ~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 79 EELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 3 3689999999997 45889999999999998777788999983
No 64
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.64 E-value=3e-15 Score=139.38 Aligned_cols=112 Identities=23% Similarity=0.417 Sum_probs=88.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC---CceE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 116 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L 116 (839)
|+|+|++|++|+.. +. +||||++++++++.++|+++++ .||+|||+|.|.+.+. ...|
T Consensus 2 L~v~vi~a~~l~~~---~~---------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l 62 (117)
T cd08383 2 LRLRILEAKNLPSK---GT---------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTL 62 (117)
T ss_pred eEEEEEEecCCCcC---CC---------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEE
Confidence 88999999999976 44 8999999999987779999999 9999999999999773 3567
Q ss_pred EEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 117 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 117 ~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
.|.++|.+.. .+.++| .+++..+..++..+.||+|...+++. +..|+|+|.++|
T Consensus 63 ~i~v~d~~~~~~~~~~g--~v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 63 SFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEEEecccCCCeeEEE--EEEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 7888887654 344555 45666666677789999997655433 246799999987
No 65
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=4.2e-16 Score=150.96 Aligned_cols=120 Identities=22% Similarity=0.334 Sum_probs=95.2
Q ss_pred eeeecCCCCCCCceecCCCCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE---
Q 003210 9 VYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--- 85 (839)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~--- 85 (839)
+|+|...+|..-+--++... ...+.|.|+|++|++|+++|..|. +||||+|.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~------~~~~~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~ 63 (153)
T cd08676 5 AFGVSPEEHEALLERVREAE------PPIFVLKVTVIEAKGLLAKDVNGF---------------SDPYCMLGIVPASRE 63 (153)
T ss_pred hhCCCHHHHHHHHHHHHhcC------CCeEEEEEEEEeccCCcccCCCCC---------------CCceEEEEEcccccc
Confidence 45555555554442222211 345779999999999999998877 899999998531
Q ss_pred -------------------------EEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEEEEEeecCCCCcceeEEEEece
Q 003210 86 -------------------------VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVE 139 (839)
Q Consensus 86 -------------------------~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~~V~d~d~~~d~~IG~~~i~l~ 139 (839)
..++|++++++.||+|||+|.|.+.+. ...|.|+|||++ +++||++.++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~ 140 (153)
T cd08676 64 RNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLK 140 (153)
T ss_pred cccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHH
Confidence 235899999999999999999999764 478999999988 889999999999
Q ss_pred eeecCccccceeee
Q 003210 140 QIYSGGKVEGTYPV 153 (839)
Q Consensus 140 ~l~~g~~~~~w~~L 153 (839)
++. +...+.||+|
T Consensus 141 ~l~-~~~~d~W~~L 153 (153)
T cd08676 141 DLP-SCGLDSWFKL 153 (153)
T ss_pred HhC-CCCCCCeEeC
Confidence 998 4457999987
No 66
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=2.2e-15 Score=142.02 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=90.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeC-CCCCeeeeEEEEEccCC----
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS---- 112 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~-~~nP~WnE~F~~~v~~~---- 112 (839)
|+|+|+|++|++|++++..+. +||||+|+++++.. +|+++.+ +.||+|||+|.|.+...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f~f~v~~~~~~~ 64 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK---------------IDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC---------------cCceEEEEECCEee-eeeEcCCCCCCCcccceEEEEecCcccCC
Confidence 789999999999999887766 89999999998776 8888875 89999999999999876
Q ss_pred CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 ~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|+|++.. ++++||++.+++.++..++..+.|++|.
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 47899999999874 6899999999999999888889999996
No 67
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.62 E-value=4.5e-15 Score=140.24 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=94.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC-Cce
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 115 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~ 115 (839)
.|+|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+.+. ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL---------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC---------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCE
Confidence 48999999999999887766 89999999864 3556999999999999999999999874 578
Q ss_pred EEEEEEeecCC-CCcceeEEEEeceeeec---CccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 116 VHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 116 L~~~V~d~d~~-~d~~IG~~~i~l~~l~~---g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
|.|+|||++.. .+++||++.++|.++.. +...+.|++|. + .|+|++.+.+.
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~g~i~l~~~~~ 121 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------QGRLLLRVSME 121 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------CCeEEEEEEEe
Confidence 99999999985 68899999999987653 33567899995 2 24788888764
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.62 E-value=2.4e-15 Score=142.23 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=87.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
+.|+|+|++|++|+.++..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI---------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC---------------CCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 679999999999999987666 89999999853 2345999999999999999999998643
Q ss_pred --CceEEEEEEeecCC---CCcceeEEEEeceeeecCccccceeee
Q 003210 113 --AAEVHFFVKDSDVV---GSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 113 --~~~L~~~V~d~d~~---~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
...|.|+|+|++.. .+++||++.+++.++..+...++||+|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 36899999999863 689999999999999887788999998
No 69
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=2.8e-15 Score=138.35 Aligned_cols=97 Identities=20% Similarity=0.366 Sum_probs=84.7
Q ss_pred CCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEEEEEeecCCCCcceeEEEEeceeeec-Ccccccee
Q 003210 74 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS-GGKVEGTY 151 (839)
Q Consensus 74 sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~-g~~~~~w~ 151 (839)
+||||+|.++++..++|++++++.||+|||+|.|.+.+. .+.|.|+|+|++..++++||++.++|.++.. +...+.||
T Consensus 13 ~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~ 92 (111)
T cd04052 13 LSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWF 92 (111)
T ss_pred CCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeE
Confidence 899999999988777999999999999999999999875 4779999999998889999999999999864 34468999
Q ss_pred eecCCCCCCCCCCceEEEEEEeecc
Q 003210 152 PVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 152 ~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
+|.+ + ..|+|+++++|.|+
T Consensus 93 ~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 93 PLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred ECCC---C---CCCEEEEEEEEecC
Confidence 9963 2 34699999999985
No 70
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=3.4e-15 Score=138.68 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=91.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-CceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~~ 118 (839)
|+|+|++|++|+..+..+. +||||+|.+++...++|+++.++.||+|||+|.|.+... .+.+.|
T Consensus 1 l~v~vi~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADRNGK---------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC---------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEE
Confidence 5899999999998887666 899999999876667999999999999999999998764 578999
Q ss_pred EEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCC
Q 003210 119 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 159 (839)
Q Consensus 119 ~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk 159 (839)
+|||++.. ++++||++.+++.++..+...+.|++|..+.+.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 99999874 588999999999999988788999999744443
No 71
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=5.4e-15 Score=142.95 Aligned_cols=117 Identities=17% Similarity=0.325 Sum_probs=92.0
Q ss_pred EEEEEEEeeC--CCCCCCCCccccccccccCCCCCCCCcEEEEEE----CCEEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 40 LDIWIYSAKN--LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV----AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 40 L~V~I~~A~~--L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l----~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
++++|..|.+ |+..+..+. +||||++++ .+....||+++++|.||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~---------------~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~ 68 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKD---------------LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKH 68 (155)
T ss_pred eEEEEEEeeccccCCCcCCCC---------------CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEecccc
Confidence 4556666666 666665555 899999997 333345999999999999999999998654
Q ss_pred --------CceEEEEEEeecCC--CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 113 --------AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 113 --------~~~L~~~V~d~d~~--~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
...|.|+|||++.+ +|++||++.++|+.+........|++|++ ..|+ .+|+|+++++-.
T Consensus 69 ~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r 137 (155)
T cd08690 69 RSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLR 137 (155)
T ss_pred chhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCC--cCCEEEEEEEec
Confidence 24699999999874 69999999999999987767778999974 4444 457999998864
No 72
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.61 E-value=2.2e-15 Score=142.33 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=85.5
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.+.|.|+|++|++|+.++.. +. +||||++.+.. ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~---------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK---------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC---------------CCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 46799999999999988864 55 89999999842 223499999999999999999999865
Q ss_pred C---CceEEEEEEeecC-CCCcceeEEEEeceeeecC---ccccceeee
Q 003210 112 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSG---GKVEGTYPV 153 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g---~~~~~w~~L 153 (839)
. ...|.|+|||.+. .++++||++.|+|.++... .....||+|
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 3 4689999999987 5688999999999998643 357789997
No 73
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=3.4e-15 Score=140.83 Aligned_cols=101 Identities=22% Similarity=0.318 Sum_probs=84.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccC-
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH- 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~- 111 (839)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+..
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 79 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL---------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC---------------CCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCH
Confidence 4779999999999999887766 89999999964 234599999999999999999998654
Q ss_pred ---CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeee
Q 003210 112 ---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 112 ---~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
....|.|+|||++.. ++++||++.++|++.. ......||+|
T Consensus 80 ~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 80 ETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 246899999999874 5789999999999843 3345689998
No 74
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=4.7e-15 Score=136.85 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=83.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-----C
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-----A 113 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-----~ 113 (839)
.|+|+|++|++|+ .+. +||||+|++++++. +|++++++.||+|||+|.|.+..+ .
T Consensus 5 ~l~V~v~~a~~L~----~~~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~l~~ 64 (111)
T cd04011 5 QVRVRVIEARQLV----GGN---------------IDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFFNFHESPDELFD 64 (111)
T ss_pred EEEEEEEEcccCC----CCC---------------CCCEEEEEECCEee-eeeEEeccCCCccccEEEEecCCCHHHHhc
Confidence 4899999999998 344 79999999999877 999999999999999999997654 2
Q ss_pred ceEEEEEEeecCC-CCcceeEEEEeceeeecCc---cccceeeecC
Q 003210 114 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG---KVEGTYPVLN 155 (839)
Q Consensus 114 ~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~---~~~~w~~L~~ 155 (839)
..|.|+|+|++.. ++++||++.++++++..+. ..+.|++|.+
T Consensus 65 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 65 KIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5799999999874 5899999999999998653 3678999975
No 75
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.60 E-value=3.6e-15 Score=139.77 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C---EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G---AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~---~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.+.|.|+|++|+||+.++..+. +||||++++- . ....||++++++.||+|||+|.|++..
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~---------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~ 77 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN---------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS 77 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC---------------CCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence 4679999999999998876665 8999999983 2 224599999999999999999999875
Q ss_pred C---CceEEEEEEeecCC-CCcceeEEEEeceeeecC-ccccceeee
Q 003210 112 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPV 153 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g-~~~~~w~~L 153 (839)
. ...|.|+||+.+.. .+++||.+.|+|.++... .....||+|
T Consensus 78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 3 47899999999874 588999999999999544 457889876
No 76
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=6.5e-15 Score=138.91 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEEccCC--
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~v~~~-- 112 (839)
.++|+|+|++|++|+.++..+. +||||+|.+. +....+|++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC---------------CCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 4679999999999999887776 8999999993 33345999999999999999999975322
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||++.. ++++||++.+++.++..+...+.|++|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 35799999999874 5889999999999999888889999984
No 77
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.59 E-value=5.6e-15 Score=138.88 Aligned_cols=102 Identities=24% Similarity=0.404 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEECC--E--EEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. . ...+|++++++.||+|||+|.|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~ 77 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR---------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK 77 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC---------------CCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH
Confidence 478999999999999887 5555 89999999832 1 34599999999999999999999765
Q ss_pred C---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeee
Q 003210 112 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
. ...|.|+|||++. ..+++||++.+++.++..+...+.||+|
T Consensus 78 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 78 SQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred HHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3 4689999999987 4578999999999999877778999987
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.59 E-value=4.1e-15 Score=141.92 Aligned_cols=108 Identities=22% Similarity=0.342 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.|.|.|+|++|++|++++..+. +||||+|.+.. ....+|++++++.||+|||+|.|.+...
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~---------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 76 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY---------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC---------------CCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence 4789999999999999988776 89999999853 2345999999999999999999998654
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|||+|.. .+++||++.+++.+ .+...+.|++++...+++.
T Consensus 77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 36799999999874 58999999999985 4666789999987666654
No 79
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.57 E-value=7.2e-15 Score=140.05 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCCCC--CccccccccccCCCCCCCCcEEEEEECC--EE--EEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 37 HGNLDIWIYSAKNLPNMDMF--HKTLGGMFNSQMNTKITSDPYVTIAVAG--AV--VGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~--~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~--~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
.|.|.|+|++|+||+.++.. +. +||||+|++.. ++ ..||++++++.||+|||+|.|.+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~---------------~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~ 78 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLG---------------IDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELP 78 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCC---------------CCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECC
Confidence 47899999999999998743 33 79999999853 22 348999999999999999999987
Q ss_pred CC---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 111 HS---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 111 ~~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
+. ...|.|+|+|+|.. .+++||++.+++.. .|...+.|..++...+++.
T Consensus 79 ~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 79 SELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred HHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 64 36799999999984 58899999999974 5777889999987767764
No 80
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.57 E-value=1.7e-14 Score=136.50 Aligned_cols=103 Identities=24% Similarity=0.351 Sum_probs=83.9
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEE-ccC-
Q 003210 37 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAH- 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~-v~~- 111 (839)
.++|+|+|++|++|+.++.. +. +||||+|.+. .....||++++++.||+|||+|.|. +..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT---------------SDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC---------------cCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 46799999999999988765 55 8999999984 2334499999999999999999994 332
Q ss_pred --CCceEEEEEEeecC-CCCcceeEEEEeceeeecC--ccccceeeec
Q 003210 112 --SAAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSG--GKVEGTYPVL 154 (839)
Q Consensus 112 --~~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g--~~~~~w~~L~ 154 (839)
....|.|+|||+|. .++++||++.|+|.++..+ +....|++|.
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 13479999999987 4688999999999998644 5577898874
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.57 E-value=9.1e-15 Score=140.08 Aligned_cols=108 Identities=27% Similarity=0.402 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~--~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.+.|.|+|++|++|+.++..+. +||||+|.+. +++ ..||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL---------------ADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 4679999999999999988777 8999999983 332 34899999999999999999998642
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|||+|.. ++++||++.+++.. .+...+.|++|.+..|++.
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 35789999999984 58899999999998 4666889999987777764
No 82
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.57 E-value=1.4e-14 Score=139.58 Aligned_cols=92 Identities=28% Similarity=0.497 Sum_probs=83.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 117 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~ 117 (839)
|.|+|+|++|++|+..+. +. +||||++.+++++. +|++++++.||+|||+|.|.+.++...|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~---------------sDPYV~v~~g~~~~-kT~vvk~t~nP~WnE~f~f~i~~~~~~l~ 64 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS---------------SDPYVVLTLGNQKV-KTRVIKKNLNPVWNEELTLSVPNPMAPLK 64 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC---------------cCcEEEEEECCEEE-EeeeEcCCCCCeecccEEEEecCCCCEEE
Confidence 889999999999998876 55 89999999998876 99999999999999999999988888999
Q ss_pred EEEEeecCC-CCcceeEEEEeceeeecCcc
Q 003210 118 FFVKDSDVV-GSELIGTVAIPVEQIYSGGK 146 (839)
Q Consensus 118 ~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~ 146 (839)
|+|||++.+ .|++||.+.+++.++.....
T Consensus 65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 65 LEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 999999974 58999999999999886543
No 83
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.56 E-value=1.7e-14 Score=135.46 Aligned_cols=89 Identities=28% Similarity=0.398 Sum_probs=76.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccC--CCc
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAA 114 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~--~~~ 114 (839)
.|+|+|+|++|++|+. +..+. +||||+|.+++++. ||++++++.||+|||+|.|.... ...
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~---------------~DPYVkV~~~~~~~-kT~vi~~t~nPvWNE~F~f~~~~~~~~~ 89 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTS---------------TDGYVKVFFGGQEK-RTEVIWNNNNPRWNATFDFGSVELSPGG 89 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCC---------------CCeEEEEEECCccc-cCceecCCCCCcCCCEEEEecccCCCCC
Confidence 3789999999999984 55555 89999999998855 99999999999999999997533 367
Q ss_pred eEEEEEEeecCC-CCcceeEEEEeceeee
Q 003210 115 EVHFFVKDSDVV-GSELIGTVAIPVEQIY 142 (839)
Q Consensus 115 ~L~~~V~d~d~~-~d~~IG~~~i~l~~l~ 142 (839)
.|.|+|||++.. ++++||++.++|....
T Consensus 90 ~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 90 KLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 999999999985 7999999999998554
No 84
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.56 E-value=9.9e-15 Score=139.16 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~--~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.+.|.|+|++|++|+..+..+. +||||+|++. +.+ ..||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~---------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT---------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 3679999999999998887766 8999999983 222 33899999999999999999998653
Q ss_pred ---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|+|+|. .++++||++.|+.. ..|...+.|..++...+++.
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 4679999999997 56899999999776 35677889999987766654
No 85
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=2e-14 Score=135.14 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 37 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
.+.|.|+|++|++|+.++ ..+. +||||+|.+. +...++|++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH---------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC---------------CCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 467999999999999887 4555 8999999983 33455999999999999999999997653
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||++.. .+++||++.++|+++......+.|++|.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 35799999999875 5889999999999999877788999984
No 86
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.56 E-value=1.2e-14 Score=143.07 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=85.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..|.|.|+|++|++|+..+..+. +||||+|.+. +...+||++++++.||+|||+|.|.+..
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~---------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~ 89 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT---------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVS 89 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC---------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCC
Confidence 56889999999999999887666 8999999983 2334599999999999999999998543
Q ss_pred C----CceEEEEEEeecCCC-CcceeEEEEeceeeecCccccceeeec
Q 003210 112 S----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 112 ~----~~~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
. ...|.|+|||++..+ +++||++.+++.++...+..+.|+++.
T Consensus 90 ~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 90 PEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred HHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 2 257999999999854 899999999999987655566676663
No 87
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.56 E-value=1.9e-14 Score=137.77 Aligned_cols=100 Identities=19% Similarity=0.386 Sum_probs=86.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEEEeeeeeCCCCCeeeeEEEEEccCC----
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS---- 112 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~---~~~~rT~vi~~~~nP~WnE~F~~~v~~~---- 112 (839)
|+|+|++|++|+.+ ..+. +||||+|.++. ....+|++++++.||+|||+|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~---------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~ 64 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT---------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64 (137)
T ss_pred CEEEEEEccCCCcc-cCCC---------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccc
Confidence 67999999999987 5555 89999999983 3345999999999999999999998664
Q ss_pred ------------CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecC
Q 003210 113 ------------AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 155 (839)
Q Consensus 113 ------------~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~ 155 (839)
...|.|+|||++.. ++++||++.+++.++......+.||+|..
T Consensus 65 ~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 65 KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred ccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 36799999999985 68999999999999987777899999963
No 88
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=2.2e-14 Score=135.05 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=85.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEE-ccCC--
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAHS-- 112 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~-v~~~-- 112 (839)
+.|.|+|++|++|+..+..+. +||||++.+. +....||+++++ .||+|||+|.|+ +...
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~---------------~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA---------------SSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC---------------CCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 579999999999999887666 7999998873 233459999887 999999999998 5432
Q ss_pred -CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 -~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|+|++.. ++++||++.|+|+++..+.....|++|.
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 46799999999874 5889999999999998888889999984
No 89
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=5.9e-14 Score=132.83 Aligned_cols=116 Identities=29% Similarity=0.505 Sum_probs=94.9
Q ss_pred EEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECC-----EEEEEeeeeeCCC-CCeeeeEEEEEcc
Q 003210 39 NLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSE-DPVWQQHFYVPVA 110 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d--~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~vi~~~~-nP~WnE~F~~~v~ 110 (839)
.|+|+|++|++|+.++ ..+. +||||++++.+ ....+|+++.++. ||+|||+|.|.+.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~ 67 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI---------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT 67 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc---------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe
Confidence 4899999999999887 3444 79999999942 2334999988765 9999999999987
Q ss_pred CCC-ceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 111 HSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 111 ~~~-~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
... ..|.|+|+|++..++++||.+.++++++..| ..|++|.++.|++. ..|.|.+++++
T Consensus 68 ~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 68 VPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred CCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCC-cceeEEEEEEE
Confidence 554 6799999999877889999999999999755 36899998877744 35688888875
No 90
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=1.1e-14 Score=139.08 Aligned_cols=109 Identities=29% Similarity=0.382 Sum_probs=90.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..|.|+|+|++|++|++++..+. +||||+|.+. ++ ...+|++++++.||+|||+|.|.+..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~---------------~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF---------------SDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP 76 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH
Confidence 35889999999999999988777 8999999984 32 24589999999999999999998754
Q ss_pred C---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 112 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
. ...|.|+|+|++.. ++++||++.|++. ..+...+.|++++...+++.
T Consensus 77 ~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 77 ENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred HHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 3 24699999999985 4899999999987 44566788999997777764
No 91
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.55 E-value=1.2e-14 Score=139.28 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..|+|+|+|++|++|+.++..+. +||||+|.+. ++ ...+|++++++.||+|||+|.|.+..
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC---------------CCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 45889999999999999887776 8999999984 22 34489999999999999999999864
Q ss_pred CC---ceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 112 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 112 ~~---~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
.. ..|.|+|||++.. ++++||++.|++.. .|...+.|++++...+++.
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 32 4799999999984 57899999999975 3667889999987666654
No 92
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=2.4e-14 Score=137.16 Aligned_cols=108 Identities=22% Similarity=0.355 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCE--EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGA--VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~--~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.|+|.|+|++|++|+.++..+. +||||+|.+ ++. ...+|++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~---------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT---------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 4789999999999998887776 899999998 322 234899999999999999999987532
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|+|++.. .+++||++.+++.+. +...+.|++++...+++.
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 35799999999985 588999999999876 666789999998777764
No 93
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6.7e-14 Score=157.53 Aligned_cols=180 Identities=21% Similarity=0.206 Sum_probs=134.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..+..|.|+|++|++|+.++..|. +||||++++-. ....+|++.++++||+|||+|.|.+...
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~---------------sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~ 228 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGT---------------SDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYE 228 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCC---------------CCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHH
Confidence 445669999999999999995554 89999999953 2334999999999999999999997654
Q ss_pred ---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeeccccc-cc---ccC
Q 003210 113 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL-SF---YHR 184 (839)
Q Consensus 113 ---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~-~~---~~~ 184 (839)
...|.|+|||.|. ..+++||++.++|..+........|.+|........+..|+|.++|+|.|.... .+ -++
T Consensus 229 ~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar 308 (421)
T KOG1028|consen 229 ELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKAR 308 (421)
T ss_pred HhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEec
Confidence 4789999999999 568999999999998887766788999975433333334799999999998553 21 233
Q ss_pred CCCCCCCCCCCCCCCCccccCceeEEeecCCCCCCCCCceeecCCccccchh
Q 003210 185 GVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGK 236 (839)
Q Consensus 185 Gv~~g~~~~gv~~~~~p~~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~ 236 (839)
.+.. .+-.+.++ |+ .++.++.++....++++.++-...+.+.++.
T Consensus 309 ~L~~-~~~~~~~d---~~---Vk~~l~~~~~~~~kkkT~~~~~~~npv~nes 353 (421)
T KOG1028|consen 309 NLKS-MDVGGLSD---PY---VKVTLLDGDKRLSKKKTSVKKKTLNPVFNET 353 (421)
T ss_pred CCCc-ccCCCCCC---cc---EEEEEecCCceeeeeeeecccCCCCCccccc
Confidence 3332 22333333 33 3688888886666677777776666654443
No 94
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.54 E-value=2.7e-15 Score=158.81 Aligned_cols=104 Identities=27% Similarity=0.411 Sum_probs=91.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
...|+|+|.+|+||.+||.+|. |||||++.+- ++...+|++++.++||+|||+|.|.+...
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGl---------------SDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~ 243 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPS 243 (683)
T ss_pred CceEEEEehhhccccccCCCCC---------------CCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccc
Confidence 4459999999999999999998 9999999983 34445999999999999999999998654
Q ss_pred --CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCC
Q 003210 113 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 113 --~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
.+.|.++|||||. +.+||+|..++.+++|.. .++++||.|++.
T Consensus 244 DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 244 DKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred cccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 4889999999998 679999999999999984 568999999864
No 95
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=2.3e-14 Score=136.76 Aligned_cols=108 Identities=27% Similarity=0.377 Sum_probs=92.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~----~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.++|.|+|++|++|+..+..+. +||||++.+.+. ..++|+++.++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~ 77 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL---------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHH
Confidence 3789999999999998886666 899999998542 345999999999999999999998764
Q ss_pred ---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|+|.+. .++++||.+.+++.+ .+...+.|++|++..+++.
T Consensus 78 ~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 78 QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred HhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 3689999999987 568899999999998 5777899999997767653
No 96
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=3.9e-14 Score=133.19 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C--EEEEEeeeeeCCC-CCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSE-DPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~--~~~~rT~vi~~~~-nP~WnE~F~~~v~~ 111 (839)
.|.|+|+|++|++|+++...+. +||||+|++- + .+..||++++++. ||+|||+|.|.+..
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~---------------~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLT---------------LSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCC---------------CCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence 4779999999999998744333 7999999983 2 2344999999985 69999999999876
Q ss_pred CC--ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 112 SA--AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 112 ~~--~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
.. ..|.++|+|++. .++++||++.++.++. .+...+.|.+++...+++.
T Consensus 78 ~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 78 QEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred hhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 53 456777888876 5689999999999863 3445789999987667664
No 97
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=9.6e-14 Score=130.90 Aligned_cols=115 Identities=27% Similarity=0.398 Sum_probs=89.9
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEE
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 118 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~ 118 (839)
.|+|+|.+|+ |...+..+. +||||+|.++++..++|++++++.||+|||+|.|.+. ..+.|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~---------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~ 65 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK---------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEF 65 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC---------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEE
Confidence 5899999999 554544555 8999999999885669999999999999999999986 4468999
Q ss_pred EEEeecCC-CCcceeEEEEeceeeecCcc-----ccceeeecCCCCC-CCCCCceEEEEE
Q 003210 119 FVKDSDVV-GSELIGTVAIPVEQIYSGGK-----VEGTYPVLNGSGK-PCKPGATLTLSI 171 (839)
Q Consensus 119 ~V~d~d~~-~d~~IG~~~i~l~~l~~g~~-----~~~w~~L~~~~gk-~~~~~g~L~l~l 171 (839)
+|||++.. .+++||++.++|.++..... ...|++|..+. + ..+..|+|.+.+
T Consensus 66 ~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~ 124 (125)
T cd04021 66 KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN-KGSSVKVGELTVIL 124 (125)
T ss_pred EEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC-CCcceeeeeEEEEe
Confidence 99999985 68999999999999885322 23589986433 2 223446777654
No 98
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.52 E-value=4.8e-14 Score=134.15 Aligned_cols=106 Identities=26% Similarity=0.408 Sum_probs=90.4
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
+..|.|+|+|++|++|+..+..+. +||||+|.+.+ ...++|++++++.||.|||+|.|.+.
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~ 74 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCC---------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCC
Confidence 455889999999999998876665 89999999963 34569999999999999999999987
Q ss_pred CC--CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCC
Q 003210 111 HS--AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 111 ~~--~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
.. ...|.|+|||++. .++++||++.+++.++... ..+.||+|.++
T Consensus 75 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred chhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 54 4689999999987 4688999999999999854 67899999754
No 99
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.51 E-value=1.2e-13 Score=126.27 Aligned_cols=79 Identities=16% Similarity=0.363 Sum_probs=67.3
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCCCce
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~ 115 (839)
|.|+|.+|++|+ +. +||||++.++. ...+||+++++++||+|||+|.|.+.. ...
T Consensus 1 L~V~V~~A~~L~-----~~---------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~ 59 (118)
T cd08686 1 LNVIVHSAQGFK-----QS---------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQT 59 (118)
T ss_pred CEEEEEeCCCCC-----CC---------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCE
Confidence 689999999996 23 79999999963 345799999999999999999999974 679
Q ss_pred EEEEEEeec-------C-CCCcceeEEEEece
Q 003210 116 VHFFVKDSD-------V-VGSELIGTVAIPVE 139 (839)
Q Consensus 116 L~~~V~d~d-------~-~~d~~IG~~~i~l~ 139 (839)
|.|.|||++ . ..|++||++.+.|+
T Consensus 60 L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 60 LRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 999999983 3 45889999998875
No 100
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.51 E-value=2.9e-14 Score=136.32 Aligned_cols=108 Identities=27% Similarity=0.401 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC-C-E--EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-G-A--VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~-~-~--~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.|.|+|+|++|++|+.++..+. +||||+|.+. + . ...+|++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~---------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG---------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 3789999999999999988776 8999999972 2 2 234899999999999999999998543
Q ss_pred ---CceEEEEEEeecC-CCCcceeEEEEeceeeecCc-cccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~-~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|+|+|. .++++||++.|... ..++ ..+.|+.|+...+++.
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~--~~~~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQY--SSGPSETNHWRRMLNSQRTAV 129 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcCc--cCCchHHHHHHHHHhCCCCEe
Confidence 2469999999987 56899999887653 3333 4688999998777764
No 101
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.50 E-value=1.8e-13 Score=154.40 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=104.5
Q ss_pred cceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCC
Q 003210 491 SWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGAN 570 (839)
Q Consensus 491 ~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~ 570 (839)
.+.++++.|++.+. .|+.. -.+..++|+++|.+||++|+|+++||+++... .
T Consensus 5 ~~~~~~vesiP~~~--~~~~~-----------------~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~---------~ 56 (424)
T PHA02820 5 NTIAVITETIPIGM--QFDKV-----------------YLSTFNFWREILSNTTKTLDISSFYWSLSDEV---------G 56 (424)
T ss_pred ccEEEEEEecCCCC--CCCCC-----------------CCCHHHHHHHHHHhhCcEEEEEeEEEecCccc---------c
Confidence 46789999987654 23210 13789999999999999999999999964210 0
Q ss_pred CccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeee
Q 003210 571 NLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFF 650 (839)
Q Consensus 571 n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~ 650 (839)
...+..+..+|.+| +++||+|+|+++.. +.+ ....+.|+++|+++++ |
T Consensus 57 ~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~~~--------------------~~~~~~L~~aGv~v~~--------~ 104 (424)
T PHA02820 57 TNFGTMILNEIIQL--PKRGVRVRIAVNKS--NKP--------------------LKDVELLQMAGVEVRY--------I 104 (424)
T ss_pred chhHHHHHHHHHHH--HHCCCEEEEEECCC--CCc--------------------hhhHHHHHhCCCEEEE--------E
Confidence 11134566777766 46999999999852 110 0234678999998742 1
Q ss_pred ecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeec
Q 003210 651 CLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQ 727 (839)
Q Consensus 651 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d 727 (839)
.... + .....|+|+||||++++.|||+||+.||+. .+.|+++.+.+
T Consensus 105 ~~~~------~-----------------------~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~--~n~E~gv~i~~ 150 (424)
T PHA02820 105 DITN------I-----------------------LGGVLHTKFWISDNTHIYLGSANMDWRSLT--QVKELGIAIFN 150 (424)
T ss_pred ecCC------C-----------------------CcccceeeEEEECCCEEEEeCCcCChhhhh--hCCceEEEEec
Confidence 1000 0 013689999999999999999999999998 78999998875
No 102
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.50 E-value=2e-13 Score=130.04 Aligned_cols=114 Identities=25% Similarity=0.380 Sum_probs=88.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E----------EEEEeeeeeCCCCCee-eeEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A----------VVGRTFVISNSEDPVW-QQHFY 106 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~----------~~~rT~vi~~~~nP~W-nE~F~ 106 (839)
+.|++++|++|+ ++.+|+ +||||++++.. . ...+|+++++++||+| ||+|.
T Consensus 3 ~~~~~~~A~~L~-~~~fg~---------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~ 66 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN---------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV 66 (137)
T ss_pred EEEEEEEeCCCC-CccCCC---------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence 689999999998 677777 89999999942 1 1459999999999999 99999
Q ss_pred EEccCCCceEEEEEEeecCC----CCcceeEEEEeceeeecCcc---ccceeeecCCCCCCCCCCceEEEEE
Q 003210 107 VPVAHSAAEVHFFVKDSDVV----GSELIGTVAIPVEQIYSGGK---VEGTYPVLNGSGKPCKPGATLTLSI 171 (839)
Q Consensus 107 ~~v~~~~~~L~~~V~d~d~~----~d~~IG~~~i~l~~l~~g~~---~~~w~~L~~~~gk~~~~~g~L~l~l 171 (839)
|.+. ..+.|.|+|+|++.. ++++||++.+|+.++..+.. ...|++|. +.+-...-.|+|.|++
T Consensus 67 f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 67 FVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCCCCcEEEEEEEEe
Confidence 9986 346899999998653 27899999999999986532 56789885 3322222345666654
No 103
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.50 E-value=1.8e-13 Score=136.98 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 315 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~ 315 (839)
++++.++++|.+|+++|+|+.|.|++.. ......|.+.|.+++++||+|+||+++.......
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~----------- 82 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK----------- 82 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch-----------
Confidence 4799999999999999999999775422 0134789999999999999999998544321100
Q ss_pred CcHHHHhhhcC---CCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCC
Q 003210 316 HDEETRRVFKH---SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 392 (839)
Q Consensus 316 ~~~~~~~~~~~---~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~ 392 (839)
........+.. .++++...+.... ...++|+|++|||++ ++++||.|+...++
T Consensus 83 ~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~~---- 138 (176)
T cd00138 83 ISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRSL---- 138 (176)
T ss_pred HHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhhh----
Confidence 01122333433 3788776554210 125799999999996 99999999999654
Q ss_pred CCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh--HHHHHHHHHHHHHhhh
Q 003210 393 HPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKA 450 (839)
Q Consensus 393 H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp--aa~dl~~~F~~rW~~~ 450 (839)
..++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 139 -----------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 139 -----------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred -----------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 2457999999999 7999999999999964
No 104
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.50 E-value=5e-14 Score=134.97 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=89.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.+.|.|+|++|++|+..+ .+. +||||+|.+.. . ...||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~---------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH---------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC---------------CCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 367999999999999888 555 89999999842 2 234899999999999999999998643
Q ss_pred ---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCC
Q 003210 113 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 160 (839)
Q Consensus 113 ---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~ 160 (839)
...|.|+|+|.+. .++++||++.|+......|...+.|..++...+++
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 2679999999986 56889999999987777788889999998655554
No 105
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.49 E-value=7.8e-14 Score=133.06 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=79.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~------~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
+.|+|+|++|++|+.++..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~---------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS---------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC---------------CCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 569999999999999887776 89999999852 234599999999999999999999865
Q ss_pred C-----CceEEEEEEeecCCC-CcceeEEEEeceeeec
Q 003210 112 S-----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYS 143 (839)
Q Consensus 112 ~-----~~~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~ 143 (839)
. ...|.|+|||++..+ +++||++.++|+++..
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2 468999999999855 8999999999999884
No 106
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=5.8e-14 Score=177.82 Aligned_cols=123 Identities=20% Similarity=0.400 Sum_probs=102.8
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC-
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA- 113 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~- 113 (839)
.+.|.|.|+|++|++|. +.+++ +||||++.++++...||++++++.||+|||+|+|.+.++.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~---------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~ 2039 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGN---------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK 2039 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCC---------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC
Confidence 46799999999999998 33455 8999999999764449999999999999999998887765
Q ss_pred -ceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 114 -AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 114 -~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
..|.|+|||+|.++++.||.+.|++.++..++...+||+|. ++|++.+..-.|++.++|.+
T Consensus 2040 ~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2040 GQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-cccccCCCcceEEEEEEecC
Confidence 78999999999999889999999999999988999999997 33333221114888888764
No 107
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=1.5e-13 Score=128.76 Aligned_cols=97 Identities=29% Similarity=0.403 Sum_probs=83.0
Q ss_pred EEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE------EEEeeeeeCCCCCeeeeEEEEEcc-CCCce
Q 003210 43 WIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV------VGRTFVISNSEDPVWQQHFYVPVA-HSAAE 115 (839)
Q Consensus 43 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~------~~rT~vi~~~~nP~WnE~F~~~v~-~~~~~ 115 (839)
..++|++|++.+..+. +||||+|.+.+.. .++|++++++.||+|||+|.|.+. ...+.
T Consensus 5 ~~i~a~~L~~~d~~g~---------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~ 69 (120)
T cd04048 5 LSISCRNLLDKDVLSK---------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQK 69 (120)
T ss_pred EEEEccCCCCCCCCCC---------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeE
Confidence 3588999999998877 8999999996543 569999999999999999999854 34568
Q ss_pred EEEEEEeecC-----CCCcceeEEEEeceeeecCccccceeeec
Q 003210 116 VHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 116 L~~~V~d~d~-----~~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
|.|+|||+|. .++++||++.+++.++..+.....|++|.
T Consensus 70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999985 46899999999999999877777899984
No 108
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.48 E-value=7.2e-14 Score=133.81 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=88.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CE--EEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GA--VVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~---~~--~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.++|.|+|++|+||+.++..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~---------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~ 78 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA---------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL 78 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC---------------CCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence 4789999999999999887776 8999999983 22 23499999999999999999999875
Q ss_pred C---CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 112 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
. ...|.|+|+|.+. .++++||++.+++.... ....+.|+.++...+++.
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQV 131 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCEE
Confidence 3 3689999999986 56889999999987432 124578999987666654
No 109
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=3e-13 Score=127.37 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=78.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEE-EEeeeeeCCCCCeeeeEEEEEccCC-CceEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV-GRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 117 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~-~rT~vi~~~~nP~WnE~F~~~v~~~-~~~L~ 117 (839)
|+|+|++|++|++++..+. +||||+|.+++.+. .||++++++.||+|||+|.|.+..+ ...|.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK---------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCCCCC---------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEE
Confidence 7999999999999998777 89999999988754 4888999999999999999997654 47899
Q ss_pred EEEEeecCC-CCcceeEEEEeceeeec
Q 003210 118 FFVKDSDVV-GSELIGTVAIPVEQIYS 143 (839)
Q Consensus 118 ~~V~d~d~~-~d~~IG~~~i~l~~l~~ 143 (839)
|+|||+|.. ++++||++.+++.+...
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 999999985 68999999999987763
No 110
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.46 E-value=3.8e-13 Score=126.51 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=81.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
++|+|+|++|++|++.+..+. +||||++.+.. ....+|++++++.||+|||+|.|.....
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGL---------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCC---------------CCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 679999999999998887666 89999999831 2345999999999999999999963322
Q ss_pred ---CceEEEEEEeecCCCCcceeEEEEeceeeecCcccccee
Q 003210 113 ---AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTY 151 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~ 151 (839)
...|.|+|||++..++++||.+.++++++..+...+.|+
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 368999999998778899999999999998665544443
No 111
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.45 E-value=1.1e-10 Score=125.51 Aligned_cols=340 Identities=18% Similarity=0.171 Sum_probs=180.1
Q ss_pred hHHHHHHHHHhcccccEEEEEecc--cc-eeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccc
Q 003210 237 CWYDICNAISQAQRLIYITGWSVW--HK-VKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVM 313 (839)
Q Consensus 237 ~f~~l~~aI~~A~~~I~I~~w~~~--~~-~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~ 313 (839)
.+++.++.|++|+++++|+.|-.+ -. +++ .+.....|..+..+|.+++.+||.|||.. +.+.... +
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~-~dsSt~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~-------- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGV-VDSSTQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-P-------- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceecc-CCCcchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-C--------
Confidence 468899999999999999865332 11 111 11112246789999999999999999987 3322110 1
Q ss_pred ccCcHHHHhhhcCCC-cEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCC
Q 003210 314 QTHDEETRRVFKHSS-VKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 392 (839)
Q Consensus 314 ~~~~~~~~~~~~~~~-v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~ 392 (839)
......|...| ++++--... .|.. -.-.|-|..|||++ --|+||.|+.+. =-|
T Consensus 142 ----~~d~~~Le~~Gaa~vr~id~~-----~l~g------~GvlHtKf~vvD~k--------hfylGSaNfDWr-SlT-- 195 (456)
T KOG3603|consen 142 ----NADLQVLESLGLAQVRSIDMN-----RLTG------GGVLHTKFWVVDIK--------HFYLGSANFDWR-SLT-- 195 (456)
T ss_pred ----cccHHHHHhCCCceEEeeccc-----cccc------CceEEEEEEEEecc--------eEEEeccccchh-hcc--
Confidence 11123344445 555432211 1110 13479999999996 899999999883 211
Q ss_pred CCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeC--hHHHHHHHHHHHHHhhhcCCCCcccCCCCchhhhhcc
Q 003210 393 HPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG--PAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIE 470 (839)
Q Consensus 393 H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~G--paa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~~~~~ 470 (839)
.--.+++.++- ..|.||...|.+.|.......-+.+........
T Consensus 196 ------------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~~~st---- 241 (456)
T KOG3603|consen 196 ------------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPNCYST---- 241 (456)
T ss_pred ------------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCcccccc----
Confidence 11345555554 379999999999999654321111110000000
Q ss_pred cCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEe
Q 003210 471 RIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIE 550 (839)
Q Consensus 471 ~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIe 550 (839)
+... +.|-.-..+......++..| +.|..| +|+. -=.+|+++.|..|++||||.
T Consensus 242 --~~N~---~~p~~~~~dg~~~~~y~saS-------P~~~~~---------~grt-----~DL~ail~~i~~A~~fv~is 295 (456)
T KOG3603|consen 242 --HYNK---PLPMKIAVDGTPATPYISAS-------PPPLNP---------SGRT-----WDLEAILNTIDEAQKFVYIS 295 (456)
T ss_pred --cccc---cCcceeecCCCCcceEEccC-------CCCCCC---------CCCc-----hhHHHHHHHHHHHhhheeee
Confidence 0000 00000000011112222222 122222 2221 23689999999999999997
Q ss_pred e-cccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 003210 551 N-QYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIY 629 (839)
Q Consensus 551 n-qYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~ 629 (839)
- +||=+..+. . . .+.- +|=.+|-+| +-|||+|++++..|+...+. .. .++
T Consensus 296 VMdY~Ps~~y~-k----~--~~fw--~iDdaiR~a--a~RgV~vR~lvs~~~~~~~~---m~---------------~~L 346 (456)
T KOG3603|consen 296 VMDYFPSTIYS-K----N--HRFW--EIDDAIRRA--AVRGVKVRLLVSCWKHSEPS---MF---------------RFL 346 (456)
T ss_pred ehhccchheee-c----C--cchh--hhhHHHHHH--hhcceEEEEEEeccCCCCch---HH---------------HHH
Confidence 4 455332221 0 0 1110 233344443 34999999999998754322 11 123
Q ss_pred HHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccC
Q 003210 630 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 709 (839)
Q Consensus 630 ~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln 709 (839)
+.|....-... +-.--+.||-...-.. +.-| +.-..|+|.||-++ .++||++||-
T Consensus 347 ~SLq~l~~~~~-~~~iqvk~f~VP~~~~--------------~~ip---------~~Rv~HnKymVTe~-aayIGTSNws 401 (456)
T KOG3603|consen 347 RSLQDLSDPLE-NGSIQVKFFIVPQTNI--------------EKIP---------FARVNHNKYMVTES-AAYIGTSNWS 401 (456)
T ss_pred HHHHHhcCccc-cCceEEEEEEeCCCcc--------------ccCc---------hhhhccceeEEeec-ceeeeccCCC
Confidence 33332110000 0001122332211000 0001 11257999999988 7899999998
Q ss_pred CCCCCCCCCcceEEeeecch
Q 003210 710 QRSMEGTRDTEIAMGAYQPE 729 (839)
Q Consensus 710 ~RSm~g~~DsEi~v~i~d~~ 729 (839)
.-=|. --.-+++++.++.
T Consensus 402 ~dYf~--~TaG~~ivv~q~~ 419 (456)
T KOG3603|consen 402 GDYFT--STAGTAIVVRQTP 419 (456)
T ss_pred cccee--ccCceEEEEecCC
Confidence 77776 3567888887653
No 112
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.39 E-value=1.4e-12 Score=130.55 Aligned_cols=130 Identities=23% Similarity=0.311 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 003210 530 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 609 (839)
Q Consensus 530 ~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~ 609 (839)
.++.+.++++|++|++.|+|+++||.+.. ......+..+|.+|. .+|++|+|++...+.....
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~--~rGv~V~il~~~~~~~~~~--- 82 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAA--RRGVKVRILVDEWSNTDLK--- 82 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHH--HCCCEEEEEEcccccCCch---
Confidence 47899999999999999999999998631 000235778888875 4699999999986543210
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHc---CcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceee
Q 003210 610 TQRILFWQHKTMQMMYETIYKALVEV---GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 686 (839)
Q Consensus 610 ~~~i~~~~~~t~~~~~~~~~~~L~~~---G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (839)
....++..|.+. |+++.. +..... ..
T Consensus 83 --------------~~~~~~~~l~~~~~~~i~~~~----------~~~~~~---------------------------~~ 111 (176)
T cd00138 83 --------------ISSAYLDSLRALLDIGVRVFL----------IRTDKT---------------------------YG 111 (176)
T ss_pred --------------HHHHHHHHHHHhhcCceEEEE----------EcCCcc---------------------------cc
Confidence 011234555544 444321 100000 02
Q ss_pred EEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecch
Q 003210 687 IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 729 (839)
Q Consensus 687 iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 729 (839)
..+|+|+||||++.+++||+|++.+|+. .|.|+++.+.+|+
T Consensus 112 ~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 112 GVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred cceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 4899999999999999999999999998 7999999999986
No 113
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.36 E-value=2.5e-12 Score=148.84 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=113.8
Q ss_pred CceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhh
Q 003210 205 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 284 (839)
Q Consensus 205 g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~k 284 (839)
.+.++++.+|.. . .....++.++++|.+||++|+|++.-| +.+ ..+.++|+.|
T Consensus 328 ~~~~q~~~sgp~--~-------------~~~~i~~~~l~~I~~A~~~I~I~tpYf------~pd------~~l~~aL~~A 380 (509)
T PRK12452 328 EGAVQIVASGPS--S-------------DDKSIRNTLLAVMGSAKKSIWIATPYF------IPD------QETLTLLRLS 380 (509)
T ss_pred CeEEEEEeCCCC--c-------------hhHHHHHHHHHHHHHhhhEEEEECCcc------CCC------HHHHHHHHHH
Confidence 347899998853 1 123468999999999999999997433 222 4689999999
Q ss_pred hcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEe
Q 003210 285 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 364 (839)
Q Consensus 285 A~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD 364 (839)
|+|||+||||+ +....... ...........+...||++..+.+. ..|+|++|||
T Consensus 381 a~rGV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~~-----------------~lHaK~~ivD 434 (509)
T PRK12452 381 AISGIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKDG-----------------FMHAKIVLVD 434 (509)
T ss_pred HHcCCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecCC-----------------CeeeeEEEEC
Confidence 99999999997 54321100 0011123345566789999876431 3799999999
Q ss_pred cCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHHHH
Q 003210 365 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFE 444 (839)
Q Consensus 365 ~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~ 444 (839)
++ +|++|+.|+....+ +..|.+..+..+++.|.++...|.
T Consensus 435 ~~--------~a~vGS~Nld~RS~--------------------------------~~n~E~~~~i~~~~~~~~l~~~f~ 474 (509)
T PRK12452 435 DK--------IATIGTANMDVRSF--------------------------------ELNYEIISVLYESETVHDIKRDFE 474 (509)
T ss_pred CC--------EEEEeCcccCHhHh--------------------------------hhhhhccEEEECHHHHHHHHHHHH
Confidence 97 99999999977432 135668888899999999999999
Q ss_pred HHHhhhc
Q 003210 445 ERWRKAS 451 (839)
Q Consensus 445 ~rW~~~~ 451 (839)
++|..+.
T Consensus 475 ~d~~~s~ 481 (509)
T PRK12452 475 DDFKHST 481 (509)
T ss_pred HHHHhCe
Confidence 9999753
No 114
>PRK13912 nuclease NucT; Provisional
Probab=99.35 E-value=1.4e-11 Score=123.29 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 315 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~ 315 (839)
++++.++++|++|+++|+|+.|.+. ...+.++|.++++|||+|+||+ |...+...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~-------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~----------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFT-------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN----------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEc-------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc-----------
Confidence 4688999999999999999988652 1469999999999999999996 76543211
Q ss_pred CcHHHHhhh-cCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCC
Q 003210 316 HDEETRRVF-KHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 394 (839)
Q Consensus 316 ~~~~~~~~~-~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~ 394 (839)
......++ +.+++++........... .....+|.|++|||++ ++++|+.|++...+..
T Consensus 88 -~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~---- 146 (177)
T PRK13912 88 -DQSTIGYLDKYPNIKVCLLKGLKAKNG--------KYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN---- 146 (177)
T ss_pred -chhHHHHHHhCCCceEEEecCccccCc--------ccccccceeEEEEcCC--------EEEEeCCCCChhHhcc----
Confidence 01111122 234566654422111000 0124689999999996 9999999999864421
Q ss_pred CccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHhhh
Q 003210 395 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 450 (839)
Q Consensus 395 ~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 450 (839)
-+++.+.++.| .+.++.+.|.+.|...
T Consensus 147 -----------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 -----------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -----------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 14678888888 5799999999999864
No 115
>PRK13912 nuclease NucT; Provisional
Probab=99.35 E-value=5.2e-12 Score=126.37 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhh
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 610 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~ 610 (839)
.+...++++|++|++.|+|+. |+++. ..+..+|.+|. +|||+|+|+++...... ..
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa--~RGV~VrIlld~~~~~~----~~ 88 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAA--KRGVKISIIYDYESNHN----ND 88 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHH--HCCCEEEEEEeCccccC----cc
Confidence 577899999999999999996 66543 25777887774 59999999999754311 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEE
Q 003210 611 QRILFWQHKTMQMMYETIYKALVE-VGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 689 (839)
Q Consensus 611 ~~i~~~~~~t~~~~~~~~~~~L~~-~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 689 (839)
... ...|.+ .+++... +..+.. . . . ....++
T Consensus 89 ~~~---------------~~~l~~~~~~~~~~-------~~~~~~----~------------~---------~-~~~~~~ 120 (177)
T PRK13912 89 QST---------------IGYLDKYPNIKVCL-------LKGLKA----K------------N---------G-KYYGIM 120 (177)
T ss_pred hhH---------------HHHHHhCCCceEEE-------ecCccc----c------------C---------c-cccccc
Confidence 000 111111 1222110 000000 0 0 0 011368
Q ss_pred eeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 690 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 690 HSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
|+|+||||++++++||+||+.+|+. .|.|+.+.+.||+..
T Consensus 121 H~K~~viD~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 121 HQKVAIIDDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred ceeEEEEcCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH
Confidence 9999999999999999999999998 899999999998753
No 116
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.35 E-value=4.8e-12 Score=141.16 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhcccccEEEEEecccceeEecCCC-CCCcchHHHHHHhhh-cCCCeEEEEEecCCccccccccccccccc
Q 003210 237 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKS-QEGVRVLLLVWDDPTSRSILGYKMDGVMQ 314 (839)
Q Consensus 237 ~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~-~~~~~~l~~lL~~kA-~~GV~VriLvwd~~~s~~~~~~~~~~~~~ 314 (839)
..++++++|.+||++|+|+++.|.|. .+.+. ...+..|.++|+++| +|||+||||+ +..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~---~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~---------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPV---IREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV---------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccE---EeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc----------
Confidence 46899999999999999999977552 22222 113458999999885 9999999997 65432110
Q ss_pred cCcHHHHhhhcCCCcE----EEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCC
Q 003210 315 THDEETRRVFKHSSVK----VLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 390 (839)
Q Consensus 315 ~~~~~~~~~~~~~~v~----v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt 390 (839)
......+.|...|++ +..+ .+.+|+|++|||++ +||+||.|+...++..
T Consensus 283 -~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 283 -YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH 335 (369)
T ss_pred -hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence 011234455666643 2211 01279999999997 9999999998754421
Q ss_pred CCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhh
Q 003210 391 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKA 450 (839)
Q Consensus 391 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~ 450 (839)
..|.++ ..++|++|.++...|.++|+..
T Consensus 336 -------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2578999999999999999854
No 117
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.32 E-value=9.7e-12 Score=114.46 Aligned_cols=87 Identities=31% Similarity=0.531 Sum_probs=73.0
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE-----EEEEeeeeeCCCCCeeeeEEEEEccC-----
Q 003210 42 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-----VVGRTFVISNSEDPVWQQHFYVPVAH----- 111 (839)
Q Consensus 42 V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~-----~~~rT~vi~~~~nP~WnE~F~~~v~~----- 111 (839)
+-.++|++|+.++..+. +||||+|++.+. ..++|++++++.||+|| +|.|++..
T Consensus 4 ~~~i~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~ 67 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK---------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGD 67 (110)
T ss_pred EEEEEeCCCCCCCCCCC---------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCC
Confidence 34579999999998877 899999998542 35699999999999999 79888642
Q ss_pred CCceEEEEEEeecCC-CCcceeEEEEeceeeecC
Q 003210 112 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG 144 (839)
Q Consensus 112 ~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g 144 (839)
....|.|+|||++.. ++++||++.++++++...
T Consensus 68 ~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 68 YDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred cCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 257899999999985 589999999999999843
No 118
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.9e-12 Score=139.96 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=99.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 117 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~ 117 (839)
..++++|..|++|...|..|+ +||||++.+++.+. ||++|...+||+|||.|+|.|.+....|+
T Consensus 295 akitltvlcaqgl~akdktg~---------------sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrik 358 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGK---------------SDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIK 358 (1283)
T ss_pred eeeEEeeeecccceecccCCC---------------CCCcEEEeecccch-hhHhhhhccchhhhhheeeeecCCCceeE
Confidence 558999999999999998888 99999999999988 99999999999999999999999999999
Q ss_pred EEEEeecC------------CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEE--EEEeecccc
Q 003210 118 FFVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL--SIQYTPMER 178 (839)
Q Consensus 118 ~~V~d~d~------------~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l--~l~f~p~~~ 178 (839)
+.|||.|. -+|+|+|+..|.+..+. +..+-||.|.-...|.. -.|.|+| ++...-.+.
T Consensus 359 vrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksa-vsgairlhisveikgeek 430 (1283)
T KOG1011|consen 359 VRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSA-VSGAIRLHISVEIKGEEK 430 (1283)
T ss_pred EEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhh-ccceEEEEEEEEEcCccc
Confidence 99999874 14899999999998775 45789999964433332 2335554 444443333
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.27 E-value=8.1e-12 Score=140.27 Aligned_cols=123 Identities=24% Similarity=0.310 Sum_probs=110.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEE
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 118 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~ 118 (839)
.|.|+|.+|+||+..+..|. +||||+|.++++.+.||.++.+++.|.|.|+|+|.+...-..|.|
T Consensus 6 sl~vki~E~knL~~~~~~g~---------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~f 70 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGM---------------RDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSF 70 (800)
T ss_pred ceeEEEeecccCCCCCCCCC---------------cCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEE
Confidence 48999999999999988877 899999999999999999999999999999999999988899999
Q ss_pred EEEeecCCCCcceeEEEEeceeeecCccccceeeecC--CCCCCCCCCceEEEEEEeeccccc
Q 003210 119 FVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLN--GSGKPCKPGATLTLSIQYTPMERL 179 (839)
Q Consensus 119 ~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~--~~gk~~~~~g~L~l~l~f~p~~~~ 179 (839)
-|||.|...|+.||++.|.=++|..-...+.||.|.. ++.+ -.|++||.+++.+....
T Consensus 71 Yv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsE---VQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 71 YVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSE---VQGKVHLELALTEAIQS 130 (800)
T ss_pred EEeccccccccccceeeeeHHHHhhCCCCccceeccccCCChh---hceeEEEEEEeccccCC
Confidence 9999998789999999999999997777899999953 3333 34699999999887654
No 120
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.26 E-value=1.8e-11 Score=115.30 Aligned_cols=114 Identities=25% Similarity=0.362 Sum_probs=75.7
Q ss_pred HHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHH
Q 003210 536 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILF 615 (839)
Q Consensus 536 yl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~ 615 (839)
++++|.+|++.|+|..+||... .+..+|..+ +.+|++|+|++.......... . .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~~~~~-~-~---- 54 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDDSEAI-N-L---- 54 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGHHCCC-S-H----
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccccchh-h-h----
Confidence 4689999999999999999432 355666654 468999999998743200000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEE
Q 003210 616 WQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMI 695 (839)
Q Consensus 616 ~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 695 (839)
.....+.+.+...|++++ .++|+|++|
T Consensus 55 -------~~~~~~~~~~~~~~i~v~----------------------------------------------~~~H~K~~i 81 (126)
T PF13091_consen 55 -------ASLKELRELLKNAGIEVR----------------------------------------------NRLHAKFYI 81 (126)
T ss_dssp -------HHHHHHHHHHHHTTHCEE----------------------------------------------S-B--EEEE
T ss_pred -------HHHHHHHhhhccceEEEe----------------------------------------------cCCCcceEE
Confidence 001123444466776542 167999999
Q ss_pred EeeeEEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 696 VDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 696 VDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
+||+++++||+|++.+||. +|.|+++.+.++..
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~~ 114 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPEL 114 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHHH
Confidence 9999999999999999997 89999999999864
No 121
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=3.6e-11 Score=104.42 Aligned_cols=80 Identities=41% Similarity=0.661 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEEEeeeeeCCCCCeeeeEEEEEccC-CCce
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAH-SAAE 115 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~---~~~~rT~vi~~~~nP~WnE~F~~~v~~-~~~~ 115 (839)
|+|+|++|++|+..+..+. +||||++.+.+ ... +|++++++.+|.|||+|.|.+.. ....
T Consensus 1 L~v~I~~a~~L~~~~~~~~---------------~~~yv~v~~~~~~~~~~-~T~~~~~~~~P~w~e~~~~~~~~~~~~~ 64 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK---------------PDPYVRVSVNGSESTKY-KTKVKKNTSNPVWNEEFEFPLDDPDLDS 64 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS---------------BEEEEEEEEETTTCEEE-EECCBSSBSSEEEEEEEEEEESHGCGTE
T ss_pred CEEEEEEEECCCCcccCCc---------------ccccceeecceeeeeee-eeeeeeccccceeeeeeeeeeecccccc
Confidence 7899999999998776655 79999999977 444 99999999999999999999643 3466
Q ss_pred EEEEEEeecCCC-CcceeEEE
Q 003210 116 VHFFVKDSDVVG-SELIGTVA 135 (839)
Q Consensus 116 L~~~V~d~d~~~-d~~IG~~~ 135 (839)
|.|+|||++..+ +++||++.
T Consensus 65 l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 65 LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEEETSSSSEEEEEEEE
T ss_pred eEEEEEECCCCCCCCEEEEEC
Confidence 999999999866 89999974
No 122
>PLN02223 phosphoinositide phospholipase C
Probab=99.23 E-value=6.5e-11 Score=133.45 Aligned_cols=123 Identities=25% Similarity=0.444 Sum_probs=93.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..+|+|+|++|++++. +.... . ...+ ..||||+|.+.| ....+|++..|+.||+|||+|.|.+..+
T Consensus 408 ~~~L~V~Visgq~~~~-~~~k~-~-------~~~s-~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P 477 (537)
T PLN02223 408 VKILKVKIYMGDGWIV-DFKKR-I-------GRLS-KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP 477 (537)
T ss_pred ceEEEEEEEEcccccC-Ccccc-c-------CCCC-CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc
Confidence 4679999999999861 11000 0 0001 179999999954 2334788888899999999999998766
Q ss_pred C-ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 113 A-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 113 ~-~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
. ..|.|+|+|+|. .+++++|++.+|+.+|..|. ++++|.+.+|++.. ..+|.+++.|
T Consensus 478 ELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 478 DLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred CceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 4 679999999998 56889999999999999886 68999999999875 3466655554
No 123
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=138.35 Aligned_cols=133 Identities=22% Similarity=0.380 Sum_probs=108.5
Q ss_pred eeceEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 35 LLHGNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..-|+|.|+|.+|++|...+. .+. .|||+++.+.+...+||++.+++.||+|||+|++.+...
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~---------------vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~ 497 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGT---------------VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF 497 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCC---------------CCceEEEEeccccCCccceeeccCCccccceEEEEeccc
Confidence 455899999999999998772 333 899999999888888999999999999999999999988
Q ss_pred CceEEEEEEeecC-CCCcceeEEEEeceeeecCccc-cceeeecCCCCCCCCCCceEEEEEEeecccccccccCCC
Q 003210 113 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV-EGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGV 186 (839)
Q Consensus 113 ~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~-~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~~~~~~Gv 186 (839)
.+.|.|+|||.+. .+|+++|+++++|..|...... +.-+.++ .+.++. |+|+..++|+|...+..--.|.
T Consensus 498 ~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~yDl~ffp~~e~k~~~~~s 569 (1227)
T COG5038 498 TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLTYDLRFFPVIEDKKELKGS 569 (1227)
T ss_pred CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEEEeeeeecccCCccccccc
Confidence 9999999999655 6789999999999988855443 3355554 455554 5999999999997765433333
No 124
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.16 E-value=1.8e-10 Score=102.36 Aligned_cols=99 Identities=33% Similarity=0.571 Sum_probs=83.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccC-CCceEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAAEVHF 118 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~-~~~~L~~ 118 (839)
|.|.|++|++|........ .+|||++.+.+...++|+++.++.||.|||.|.|.+.. ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~~~~---------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK---------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC---------------CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEE
Confidence 5789999999987544434 79999999998444599999999999999999999987 5678999
Q ss_pred EEEeecCCC-CcceeEEEEeceeee-cCccccceeee
Q 003210 119 FVKDSDVVG-SELIGTVAIPVEQIY-SGGKVEGTYPV 153 (839)
Q Consensus 119 ~V~d~d~~~-d~~IG~~~i~l~~l~-~g~~~~~w~~L 153 (839)
+|++.+..+ +.+||.+.+++.++. .......|++|
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 999988754 789999999999988 56667778765
No 125
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.15 E-value=9.8e-11 Score=138.72 Aligned_cols=133 Identities=25% Similarity=0.386 Sum_probs=107.1
Q ss_pred CCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEE
Q 003210 27 TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFY 106 (839)
Q Consensus 27 ~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~ 106 (839)
.-.+..++-..|.|+|.+.+|.||++.|..|. +||||++.+.++++++|+++++++||+|||+|.
T Consensus 1029 ~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~---------------sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~ 1093 (1227)
T COG5038 1029 KLPPVEMVENSGYLTIMLRSGENLPSSDENGY---------------SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFT 1093 (1227)
T ss_pred ccCcceeecccCcEEEEEeccCCCcccccCCC---------------CCceEEEEecceecccccchhccCCCCccccce
Confidence 34444556678999999999999999999887 899999999999888999999999999999999
Q ss_pred EEccCC-CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 107 VPVAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 107 ~~v~~~-~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
+++... ...+++.|+|||. .++++||.+.++|..+..+.....-.+|- ... ....+|.++....|.+.
T Consensus 1094 i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ld-gk~-~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLD-GKT-FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred EeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeecc-Ccc-eEecccEeecceecchh
Confidence 998754 5789999999998 56899999999999999776655555553 322 22234566666665554
No 126
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=2.6e-10 Score=101.72 Aligned_cols=93 Identities=39% Similarity=0.654 Sum_probs=79.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEEEeeeeeCCCCCeeeeEEEEEccCC-Cce
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 115 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~--~~~rT~vi~~~~nP~WnE~F~~~v~~~-~~~ 115 (839)
+|.|+|++|++|......+. .+|||++.+... ...+|+++.++.||.|||+|.|++... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK---------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCE
Confidence 37899999999987654333 799999999876 455999999999999999999999887 789
Q ss_pred EEEEEEeecCCC-CcceeEEEEeceeeecCcc
Q 003210 116 VHFFVKDSDVVG-SELIGTVAIPVEQIYSGGK 146 (839)
Q Consensus 116 L~~~V~d~d~~~-d~~IG~~~i~l~~l~~g~~ 146 (839)
|.|+|+|++..+ +.++|.+.+++.++..+..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 999999998754 8899999999998886543
No 127
>PLN02952 phosphoinositide phospholipase C
Probab=99.12 E-value=3.8e-10 Score=130.03 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=92.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..+|.|+|++|.+|+... ..... +. ....||||+|.+-+ ....+|+++.++.||+|||+|.|.+..+
T Consensus 469 ~~~L~V~VisGq~l~lp~-~~~~~-~~-------~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P 539 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDF-SHTHF-DS-------YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP 539 (599)
T ss_pred cceEEEEEEECcccCCCC-ccccC-Cc-------cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC
Confidence 467999999999986321 10000 00 01159999999854 2333999999999999999999987665
Q ss_pred C-ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 113 A-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 113 ~-~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
. ..|.|+|+|+|. .+++++|++.+||.+|..|. +|++|.+..|++.+ ...|.+++.|
T Consensus 540 ELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 540 ELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred CccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 4 678999999987 45889999999999999886 59999999998875 3344444443
No 128
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.09 E-value=7.4e-10 Score=104.29 Aligned_cols=124 Identities=23% Similarity=0.419 Sum_probs=84.1
Q ss_pred HHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcc-ccccccccccccccCcHH
Q 003210 241 ICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTS-RSILGYKMDGVMQTHDEE 319 (839)
Q Consensus 241 l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s-~~~~~~~~~~~~~~~~~~ 319 (839)
|.++|++|+++|+|+.+.|. ...+.++|..++++||+|+|++ +.... ..... ......
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-------------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~-------~~~~~~ 59 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-------------DPDIIKALLDAAKRGVKVRIIV-DSNQDDSEAIN-------LASLKE 59 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCS-------HHHHHH
T ss_pred CHHHHhccCCEEEEEEEecC-------------cHHHHHHHHHHHHCCCeEEEEE-CCCccccchhh-------hHHHHH
Confidence 57899999999999998651 2568899999999999999997 44211 00000 000112
Q ss_pred HHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCcccc
Q 003210 320 TRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTL 399 (839)
Q Consensus 320 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~ 399 (839)
....+...|+++. .+.|.|++|||++ ++++|+.|++...|
T Consensus 60 ~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~----------- 99 (126)
T PF13091_consen 60 LRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSF----------- 99 (126)
T ss_dssp HHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCS-----------
T ss_pred HHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchh-----------
Confidence 3334466777765 1379999999986 99999999998654
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChH-HHHHHHHHHHHH
Q 003210 400 QTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERW 447 (839)
Q Consensus 400 ~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpa-a~dl~~~F~~rW 447 (839)
...++..+.+++|. +..+.+.|.+.|
T Consensus 100 ----------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 ----------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ----------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ----------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 22369999999996 999999999989
No 129
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.08 E-value=6e-10 Score=128.20 Aligned_cols=124 Identities=20% Similarity=0.352 Sum_probs=94.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..+|.|+|+.+.+++....... + ...++ .||||+|.+-+ ....+|++..++.||+|||+|.|++.-+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~-----~---~~~s~-~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP 538 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTH-----F---DSYSP-PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP 538 (598)
T ss_pred CcEEEEEEEEccCccCCCcccc-----C---CCCCC-CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC
Confidence 4679999999998752210000 0 00011 69999999843 2234899988999999999999987666
Q ss_pred C-ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 113 A-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 113 ~-~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
. +.|.|.|+|+|. .++++||+..||+.+|..|. +.++|++..|.+.. ...|.+++.|
T Consensus 539 ELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 539 ELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred ceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 4 789999999998 67899999999999999886 57899999998875 3467666665
No 130
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.07 E-value=6.7e-10 Score=128.50 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=108.2
Q ss_pred CceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhh
Q 003210 205 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 284 (839)
Q Consensus 205 g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~k 284 (839)
++.++++.+|.. . ......+.+.++|.+||++|+|++-. ++. ...+.++|+.+
T Consensus 302 ~~~~qi~~sgP~--~-------------~~~~~~~~~~~~I~~A~~~I~I~tpY------fip------~~~i~~aL~~A 354 (483)
T PRK01642 302 GHTVQVIASGPG--D-------------PEETIHQFLLTAIYSARERLWITTPY------FVP------DEDLLAALKTA 354 (483)
T ss_pred CceEEEEeCCCC--C-------------hhhHHHHHHHHHHHHhccEEEEEcCC------cCC------CHHHHHHHHHH
Confidence 457899988753 1 11235678999999999999999732 222 24799999999
Q ss_pred hcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEe
Q 003210 285 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 364 (839)
Q Consensus 285 A~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD 364 (839)
|+|||+|+|++ +....... ...........+...||++..+.+. ..|.|++|||
T Consensus 355 a~rGV~Vril~-p~~~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y~~~-----------------~~HaK~~ivD 408 (483)
T PRK01642 355 ALRGVDVRIII-PSKNDSLL--------VFWASRAFFTELLEAGVKIYRYEGG-----------------LLHTKSVLVD 408 (483)
T ss_pred HHcCCEEEEEe-CCCCCcHH--------HHHHHHHHHHHHHHcCCEEEEeCCC-----------------ceEeEEEEEC
Confidence 99999999997 44221110 1111122334456789998776431 2699999999
Q ss_pred cCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh-HHHHHHHHH
Q 003210 365 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNF 443 (839)
Q Consensus 365 ~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F 443 (839)
++ ++++|+.|+...-+. --+++.+.|.+| .+.++.+.|
T Consensus 409 ~~--------~~~vGS~N~d~rS~~---------------------------------~N~E~~~~i~d~~~~~~l~~~f 447 (483)
T PRK01642 409 DE--------LALVGTVNLDMRSFW---------------------------------LNFEITLVIDDTGFAADLAAMQ 447 (483)
T ss_pred CC--------EEEeeCCcCCHhHHh---------------------------------hhhcceEEEECHHHHHHHHHHH
Confidence 97 999999999663221 114788999998 589999999
Q ss_pred HHHHhhh
Q 003210 444 EERWRKA 450 (839)
Q Consensus 444 ~~rW~~~ 450 (839)
.++|...
T Consensus 448 ~~d~~~s 454 (483)
T PRK01642 448 EDYFARS 454 (483)
T ss_pred HHHHHhC
Confidence 9999864
No 131
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.05 E-value=6e-10 Score=127.80 Aligned_cols=122 Identities=29% Similarity=0.440 Sum_probs=95.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEEeee-eeCCCCCeeeeEEEEEccCCC
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFV-ISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~----~~~rT~v-i~~~~nP~WnE~F~~~v~~~~ 113 (839)
+|+|+|+++++++..--.+. + .. .+||||.|++.+. ...+|++ ..|+.||.|+|+|.|++..+.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~-----~-----~~-~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE 685 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK-----F-----GE-ISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE 685 (746)
T ss_pred eeEEEEEecCcccCCCCCCc-----c-----cc-cCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc
Confidence 79999999997654311110 0 01 1799999999653 3349995 456999999999999998775
Q ss_pred -ceEEEEEEeecCCC-CcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 114 -AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 114 -~~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
+.|.|.|+|+|..+ |+|+|+..||+++|..|. +-++|++..|+... ...|.+++.+.+
T Consensus 686 LAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~-~asLfv~i~~~~ 745 (746)
T KOG0169|consen 686 LALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALS-SASLFVRIAIVE 745 (746)
T ss_pred eeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCcccc-ceeEEEEEEEec
Confidence 78999999999965 999999999999999885 56899999998874 447878777653
No 132
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.03 E-value=1.6e-09 Score=124.59 Aligned_cols=122 Identities=20% Similarity=0.379 Sum_probs=93.8
Q ss_pred ceEEEEEEEEeeCCCC--CCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 37 HGNLDIWIYSAKNLPN--MDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~--~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
..+|.|+|+.+.+++- ...... ... ..||||+|.+.+ ....+|+++.++.||+|||+|.|.+.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~----------~~~-~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~ 519 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFD----------QYS-PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLT 519 (581)
T ss_pred cceEEEEEEEcccccCCCCccccC----------CCC-CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEE
Confidence 3579999999988541 111000 001 169999999953 23349999999999999999999876
Q ss_pred CCC-ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 111 HSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 111 ~~~-~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
.+. ..|.|.|+|+|. .++++||++.||+..|..|. +.++|.+..|.+.. ...|.+++.|
T Consensus 520 ~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 520 VPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred cCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 654 789999999987 56899999999999999885 57899999998875 3477777665
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=99.00 E-value=2.6e-09 Score=122.50 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=96.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCee-eeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVW-QQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~W-nE~F~~~v~~ 111 (839)
..+|+|+|++|++|+-...... . ...-..||||+|.+.+ ....+|+++.++.||+| ||+|.|.+..
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~-~--------~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~ 500 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTH-F--------DQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRV 500 (567)
T ss_pred CceEEEEEEECCccCCCCCCCC-C--------CCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEc
Confidence 3479999999998742100000 0 0000169999999853 22349999988999999 9999999766
Q ss_pred CC-ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 112 SA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 112 ~~-~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
+. ..|.|+|+|+|. .++++||++.||++.|..|. +.++|++..|++.. .++|.+++.+.+.
T Consensus 501 pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 501 PELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred CceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 64 789999999986 56899999999999999875 57899999999875 4588888887654
No 134
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.97 E-value=3e-09 Score=100.21 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=75.2
Q ss_pred EEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCC--CeeeeEEEEEccCC-
Q 003210 40 LDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSED--PVWQQHFYVPVAHS- 112 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~n--P~WnE~F~~~v~~~- 112 (839)
|+|.|.+|++++..+. .|.. .+||||++.+.+ ....+|.|..+++| |+||++|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~-------------~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~ 68 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEK-------------MSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLP 68 (133)
T ss_pred EEEEEEECcCCcccccccCCcc-------------ccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCC
Confidence 8999999999765443 3321 189999999976 34559999999999 99999999887651
Q ss_pred -----------------------CceEEEEEEeecC-CCCcceeEEEEeceeeecCc
Q 003210 113 -----------------------AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG 145 (839)
Q Consensus 113 -----------------------~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~ 145 (839)
...|.|+|||.|. ..|++||.+.++|..+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 69 AEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2578999999998 56999999999999887553
No 135
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.96 E-value=2.1e-09 Score=95.09 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=72.1
Q ss_pred EEEEEEEeeCCCCCC---CCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceE
Q 003210 40 LDIWIYSAKNLPNMD---MFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 116 (839)
Q Consensus 40 L~V~I~~A~~L~~~d---~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L 116 (839)
|.|+|..|+++...+ +.++ +||||.|.+++...+||++ +.||+|||+|.|++. ....+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~---------------~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEi 61 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKR---------------PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEE 61 (109)
T ss_pred CEEEEEEEecCccccchhhccC---------------CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEE
Confidence 689999999998776 3333 7999999999987779998 699999999999994 57899
Q ss_pred EEEEEeecCCCCcceeEEEEeceeeec
Q 003210 117 HFFVKDSDVVGSELIGTVAIPVEQIYS 143 (839)
Q Consensus 117 ~~~V~d~d~~~d~~IG~~~i~l~~l~~ 143 (839)
.|+|||+.....-.||..-+.+++|..
T Consensus 62 el~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 62 EVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEEeCCCCeecceeeehhhHHHHHH
Confidence 999999865555589999999988873
No 136
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.1e-09 Score=121.40 Aligned_cols=108 Identities=29% Similarity=0.461 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C--EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
+|.|+|.|++|++|+.++..+. +||||++.+- . .+..+|.+.+++.||+|||+|.|.+...
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~---------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL---------------SDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPE 361 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHH
Confidence 5999999999999999998777 8999999982 2 2334899999999999999999987643
Q ss_pred ---CceEEEEEEeecCCC-CcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|||+|..+ +++||.+.+.... .+.....|..++...+++.
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 256899999999854 6799988887664 4555788998887666664
No 137
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.89 E-value=8e-09 Score=116.45 Aligned_cols=136 Identities=19% Similarity=0.158 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 315 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~ 315 (839)
.+...+.++|.+|+++|+|++=- ++. +..|.++|+.+|+|||+|+||+ +....... +..
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpY------f~p------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~--------~~~ 264 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAY------FFP------GYRLLRALRNAARRGVRVRLIL-QGEPDMPI--------VRV 264 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecC------cCC------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHH--------HHH
Confidence 35678999999999999998621 222 3579999999999999999998 54322111 111
Q ss_pred CcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCC
Q 003210 316 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 395 (839)
Q Consensus 316 ~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~ 395 (839)
........+.+.||++..+.. ...|.|++|||++ +++||+.|+...-+ .
T Consensus 265 a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~rS~-~----- 313 (411)
T PRK11263 265 GARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDPLSL-S----- 313 (411)
T ss_pred HHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCHHHh-h-----
Confidence 122345567778999876532 1369999999997 99999999976321 1
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChH-HHHHHHHHHHHHhhh
Q 003210 396 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERWRKA 450 (839)
Q Consensus 396 ~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpa-a~dl~~~F~~rW~~~ 450 (839)
--.++.+.|.+|. +..+...|.+.+...
T Consensus 314 ---------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~~~ 342 (411)
T PRK11263 314 ---------------------------LNLEANLIIRDRAFNQTLRDNLNGLIAAD 342 (411)
T ss_pred ---------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHHhh
Confidence 1136778888885 788889999998633
No 138
>PRK05443 polyphosphate kinase; Provisional
Probab=98.88 E-value=8e-09 Score=122.32 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred HHHHHHHHhccc-----eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 003210 534 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 608 (839)
Q Consensus 534 ~ayl~~I~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~ 608 (839)
+.++..|++|.+ .|.|+-..+.+++ .+..+|.+| +++|++|.|+++..+-.
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~iv~aL~~A--a~~Gk~V~vlve~karf----- 406 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS-----------------PIVDALIEA--AENGKQVTVLVELKARF----- 406 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH-----------------HHHHHHHHH--HHcCCEEEEEEccCccc-----
Confidence 457889999999 8999765554332 577778777 56899999999986411
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEE
Q 003210 609 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 688 (839)
Q Consensus 609 ~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 688 (839)
..++. ..+++.|+++|+++.|.. ....
T Consensus 407 -----de~~n-------~~~~~~L~~aGv~V~y~~-----------------------------------------~~~k 433 (691)
T PRK05443 407 -----DEEAN-------IRWARRLEEAGVHVVYGV-----------------------------------------VGLK 433 (691)
T ss_pred -----cHHHH-------HHHHHHHHHcCCEEEEcc-----------------------------------------CCcc
Confidence 11111 236788999999874310 0147
Q ss_pred EeeeEEEEeee-------EEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 689 VHSKGMIVDDE-------YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 689 vHSKlmIVDD~-------~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
+|||+++||++ |+.|||+|+|.||.. .++|+++.+.|++.+
T Consensus 434 ~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~--~y~D~~l~t~d~~i~ 481 (691)
T PRK05443 434 THAKLALVVRREGGGLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 481 (691)
T ss_pred ceeEEEEEEeecCCceeEEEEEcCCCCCcchhh--hccceeEEEeChHHH
Confidence 99999999999 999999999999998 899999999998864
No 139
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.86 E-value=6.1e-10 Score=74.42 Aligned_cols=27 Identities=63% Similarity=1.040 Sum_probs=18.4
Q ss_pred eecccceEEEEecCCCCCCccEEEEEccccCCCCC
Q 003210 353 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 387 (839)
Q Consensus 353 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r 387 (839)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 37899999999997 9999999999864
No 140
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.72 E-value=4.3e-08 Score=111.52 Aligned_cols=125 Identities=25% Similarity=0.428 Sum_probs=93.3
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEEeeeeeCCCCCeee-eEEEEE
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQ-QHFYVP 108 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~vi~~~~nP~Wn-E~F~~~ 108 (839)
+..-+|.|.|+.|+.|+...... ..|||.|++-+ .+.++|.|+.|++||+|| |+|+|.
T Consensus 1062 l~p~~lsv~vigaRHL~k~gr~i----------------~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe 1125 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKLGRSI----------------ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE 1125 (1267)
T ss_pred ccceEEEEEEeeccccccCCCCc----------------cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE
Confidence 34456999999999999433211 47999999844 455567777889999999 999999
Q ss_pred ccCCC-ceEEEEEEeecCCCC-cceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeeccccc
Q 003210 109 VAHSA-AEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 179 (839)
Q Consensus 109 v~~~~-~~L~~~V~d~d~~~d-~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~ 179 (839)
+.++. ..|.|.|+|.|.+++ .|||++..|+..|..|- +.+||.+.-.... ..+.|.+.++-.|+...
T Consensus 1126 I~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1126 IYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFIEMRPVLES 1194 (1267)
T ss_pred eeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeeeEeccccCc
Confidence 98885 789999999999775 49999999999999875 4577754322222 23466667776666543
No 141
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.70 E-value=2.8e-08 Score=108.99 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=98.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeee-EEEEEccCC---
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQ-HFYVPVAHS--- 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE-~F~~~v~~~--- 112 (839)
.|.|.|+|..|++||-||..+. ..|.||.|.+++... ||-|..+++||.||- -|.|.|.+.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd--------------~tdafveik~~n~t~-ktdvf~kslnp~wnsdwfkfevddadlq 66 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASD--------------LTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWFKFEVDDADLQ 66 (1169)
T ss_pred CCcceeEEEeccCCcccccccc--------------cchheeEEEecccce-ehhhhhhhcCCcccccceEEecChhhhc
Confidence 4789999999999999986544 269999999999998 999999999999995 688998765
Q ss_pred CceEEEEEEeecC-CCCcceeEEEEeceeeec----------CccccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 113 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS----------GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 113 ~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~----------g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
.+.|.|++.|+|. +.+|-||++.|.++.|.. |..+.+|||+++.-.. -.|+|.+.++-
T Consensus 67 deplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvivkv 135 (1169)
T KOG1031|consen 67 DEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIVKV 135 (1169)
T ss_pred cCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEEEE
Confidence 4789999999998 668999999999988762 3446899999975332 34588877763
No 142
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.66 E-value=1.2e-07 Score=107.67 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCch
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--GVPTGA 608 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~pe--g~~~~~ 608 (839)
++..+++++|++|+++||||+-||-.+.. +.++..+|.+|.++++|++|+|++...-. |..+..
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~--------------g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~ 100 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDDEA--------------GREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAA 100 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCCch--------------HHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccC
Confidence 68899999999999999999999987642 56788899888878899999999986311 000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcC--cCCCCCccCceeeeecC--ccccccccCCCCCCCCCCCCChhhhcccCce
Q 003210 609 ATQRILFWQHKTMQMMYETIYKALVEVG--LEGAFSPQDYLNFFCLG--NREVIDQTDTSLSGNPTAPNTPEALSRKSGR 684 (839)
Q Consensus 609 ~~~~i~~~~~~t~~~~~~~~~~~L~~~G--~~~~~~p~~y~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (839)
+ .....+++..|.++| +++. +|.+. .++
T Consensus 101 ~------------~~~~~~~~~~l~~~~~gv~v~--------~f~~p~~~~e---------------------------- 132 (451)
T PRK09428 101 A------------SNTNADWYCEMAQEYPGVDIP--------VYGVPVNTRE---------------------------- 132 (451)
T ss_pred C------------CCcCHHHHHHHHHhCCCceEE--------EcCCccccch----------------------------
Confidence 0 001124567787764 5542 22110 000
Q ss_pred eeEEEeeeEEEEeeeEEEEeccccCCCCCCC----CCCcceEEeeecchh
Q 003210 685 FMIYVHSKGMIVDDEYVILGSANINQRSMEG----TRDTEIAMGAYQPEY 730 (839)
Q Consensus 685 ~~iyvHSKlmIVDD~~~iIGSANln~RSm~g----~~DsEi~v~i~d~~~ 730 (839)
.....|-|++||||++++.| |||++--+.. ..|. .+.|++|..
T Consensus 133 ~~gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~l 179 (451)
T PRK09428 133 ALGVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAEL 179 (451)
T ss_pred hhhhceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCchH
Confidence 01247999999999999999 8999955431 1344 566777763
No 143
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.65 E-value=4.1e-07 Score=98.50 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccC
Q 003210 237 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 316 (839)
Q Consensus 237 ~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~ 316 (839)
-.++|+..|..|++.|||......|.+....+ . .-+.|+++|+++|-|||+||+||-.-.-+... ..+.+. .
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~--~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~----m~~~L~-S 348 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H--RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPS----MFRFLR-S 348 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c--chhhhhHHHHHHhhcceEEEEEEeccCCCCch----HHHHHH-H
Confidence 37999999999999999998887887433333 3 23599999999999999999998321111100 000000 0
Q ss_pred cHHHHhhhcCCCcEEEec--cCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCC
Q 003210 317 DEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 394 (839)
Q Consensus 317 ~~~~~~~~~~~~v~v~~~--p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~ 394 (839)
-+.....+.+..|+|.++ |...-. .+.....+|.|++|-+. .||+|.-|.+.+||-...
T Consensus 349 Lq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~Ta-- 409 (456)
T KOG3603|consen 349 LQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTSTA-- 409 (456)
T ss_pred HHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccceeccC--
Confidence 001111224566777664 554321 12334679999999997 999999999998873210
Q ss_pred CccccccccCCCCCCCcccCCCCCCCCCCeeeeeee-----eeChHHHHHHHHHHHHHhhhc
Q 003210 395 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSK-----IDGPAAYDVLTNFEERWRKAS 451 (839)
Q Consensus 395 ~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~-----i~Gpaa~dl~~~F~~rW~~~~ 451 (839)
-+++. -.|+++.+|...|+.+|+..-
T Consensus 410 -------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 410 -------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred -------------------------------ceEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 11222 246799999999999999653
No 144
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.61 E-value=6.1e-09 Score=117.08 Aligned_cols=122 Identities=21% Similarity=0.354 Sum_probs=96.3
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-------------E-----------------EEEE
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-------------A-----------------VVGR 89 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-------------~-----------------~~~r 89 (839)
|.|.+.+|++|-+.+.+|. ||||+.+.+-. + -.+-
T Consensus 116 l~is~~~ak~l~akd~ngf---------------SdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIka 180 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGF---------------SDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKA 180 (1103)
T ss_pred HHHHHHHhcCccccCCCCC---------------CChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhh
Confidence 6788899999999998888 89999888610 0 0225
Q ss_pred eeeeeCCCCCeeeeEEEEEccCCC-ceEEEEEEeecCC-------------------------------------CCcce
Q 003210 90 TFVISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV-------------------------------------GSELI 131 (839)
Q Consensus 90 T~vi~~~~nP~WnE~F~~~v~~~~-~~L~~~V~d~d~~-------------------------------------~d~~I 131 (839)
|.|+++|+||+|+|+|.|.+.+-. ..+.+.+||+|.- .|||+
T Consensus 181 tsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFL 260 (1103)
T KOG1328|consen 181 TSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFL 260 (1103)
T ss_pred cccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccc
Confidence 788888999999999999998764 6799999998741 17899
Q ss_pred eEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecccc
Q 003210 132 GTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 178 (839)
Q Consensus 132 G~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~ 178 (839)
|.+.|||.+|... ..+.||.|...+.+.. -.|.++|++...-.+.
T Consensus 261 GciNipl~EiP~~-Gld~WFkLepRS~~S~-VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 261 GCINIPLAEIPPD-GLDQWFKLEPRSDKSK-VQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cccccchhcCCcc-hHHHHhccCccccccc-ccceEEEEEEEeeecc
Confidence 9999999999854 5899999986555543 4678999988765433
No 145
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.57 E-value=5.1e-08 Score=65.99 Aligned_cols=26 Identities=54% Similarity=0.700 Sum_probs=24.5
Q ss_pred EEEeeeEEEEeeeEEEEeccccCCCC
Q 003210 687 IYVHSKGMIVDDEYVILGSANINQRS 712 (839)
Q Consensus 687 iyvHSKlmIVDD~~~iIGSANln~RS 712 (839)
.+.|+|+||+|+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 37899999999999999999999987
No 146
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.35 E-value=1.4e-07 Score=106.45 Aligned_cols=101 Identities=25% Similarity=0.327 Sum_probs=84.0
Q ss_pred CCCCceee--eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEEEeeeeeCCCC
Q 003210 27 TKGSLKVL--LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSED 98 (839)
Q Consensus 27 ~~~~~~~~--l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~------~~~rT~vi~~~~n 98 (839)
+..+.+.. -.+-+|-|.|+-|+++-+-|.+|. |||||+|++... ...+|+|+++++|
T Consensus 934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGl---------------SDPFVviEl~P~~~fp~v~~q~T~V~~rtLn 998 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGL---------------SDPFVVIELIPKFRFPAVPVQKTKVVSRTLN 998 (1103)
T ss_pred CceEEEEEeeccccchhhhhhccccccccCCCCC---------------CCCeEEEEeccccccccchhhhhhhhhcccc
Confidence 33444442 456679999999999999999998 999999999754 3459999999999
Q ss_pred CeeeeEEEEEccCC-----CceEEEEEEeecC-CCCcceeEEEEeceeee
Q 003210 99 PVWQQHFYVPVAHS-----AAEVHFFVKDSDV-VGSELIGTVAIPVEQIY 142 (839)
Q Consensus 99 P~WnE~F~~~v~~~-----~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~ 142 (839)
|+++|+|.|.|... ...|.|+|+|+|. ..+||-|++.+-|.++.
T Consensus 999 PVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 999 PVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred chhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 99999999998643 3579999999997 67999999999998776
No 147
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.25 E-value=3.2e-06 Score=97.40 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=95.2
Q ss_pred HHHHHHHHhcccccEEEE-EecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccCc
Q 003210 239 YDICNAISQAQRLIYITG-WSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 317 (839)
Q Consensus 239 ~~l~~aI~~A~~~I~I~~-w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~ 317 (839)
..++++|.+|+++|+|+. |.+ . +..+.++|+.++++||+|+|++ ++.+.... ..+....
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~-------~------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~~~~ 332 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV-------P------DRELLAALKAAARRGVDVRIII-PSLGANDS------AIVHAAY 332 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC-------C------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHHHHH
Confidence 679999999999999997 633 2 3568899999999999999997 63211100 0000001
Q ss_pred HHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCcc
Q 003210 318 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 397 (839)
Q Consensus 318 ~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~ 397 (839)
......+...|+++..++.. ...|.|++|||++ ++++|+.|+...-+.
T Consensus 333 ~~~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~-------- 380 (438)
T COG1502 333 RAYLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLR-------- 380 (438)
T ss_pred HHHHHHHHHhCCEEEEecCC----------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHH--------
Confidence 12344455678888665441 1479999999997 999999999885321
Q ss_pred ccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHhhh
Q 003210 398 TLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 450 (839)
Q Consensus 398 ~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 450 (839)
.| -.+.+.|+.+ .+.++...|...|...
T Consensus 381 ----------lN---------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 381 ----------LN---------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ----------Hh---------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 01 2567888888 7899999999777654
No 148
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.19 E-value=4.3e-07 Score=60.79 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=17.3
Q ss_pred EEeeeEEEEeeeEEEEeccccCCCC
Q 003210 688 YVHSKGMIVDDEYVILGSANINQRS 712 (839)
Q Consensus 688 yvHSKlmIVDD~~~iIGSANln~RS 712 (839)
..|+|++||||++++|||+||+.|+
T Consensus 4 ~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 4 SHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp EE---EEEETTTEEEEE---SSHHH
T ss_pred ceeeEEEEEcCCEEEECceecCCCC
Confidence 6899999999999999999999764
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.11 E-value=4.8e-06 Score=76.11 Aligned_cols=110 Identities=25% Similarity=0.395 Sum_probs=77.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccC--CCCCCCCcEEEEEE---CCEEEEEeeeeeCCCCCeeeeEEEEEcc----
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQM--NTKITSDPYVTIAV---AGAVVGRTFVISNSEDPVWQQHFYVPVA---- 110 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~--~~~~~sDPYv~v~l---~~~~~~rT~vi~~~~nP~WnE~F~~~v~---- 110 (839)
|.|.|++|.+|+..-..... + ...+ ...++.++||++.+ .+.+..+|+++.++..|.||-+|.|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~--~--~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~ 76 (143)
T cd08683 1 LSVQIHRASGLQAAARALAE--Q--DPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQ 76 (143)
T ss_pred CeEEeehhhhHHHHHHHHhh--h--CcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEE
Confidence 46889999999743110000 0 0000 11344799999996 3455559999999999999999999876
Q ss_pred ----CC--------CceEEEEEEeecC-----------CCCcceeEEEEeceeeec-Cccccceeee
Q 003210 111 ----HS--------AAEVHFFVKDSDV-----------VGSELIGTVAIPVEQIYS-GGKVEGTYPV 153 (839)
Q Consensus 111 ----~~--------~~~L~~~V~d~d~-----------~~d~~IG~~~i~l~~l~~-g~~~~~w~~L 153 (839)
.. ...+.|+||..+. .+|-+||.+.||+.+|.. ...+.+|||+
T Consensus 77 ~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 77 RNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 2578999998765 135589999999999884 3448899985
No 150
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.88 E-value=2e-05 Score=89.84 Aligned_cols=104 Identities=19% Similarity=0.386 Sum_probs=78.9
Q ss_pred CCcEEEEEECCE---EEEEeeeeeCCCCCeeeeEEEEEccCC----------------CceEEEEEEee-cC-CCCccee
Q 003210 74 SDPYVTIAVAGA---VVGRTFVISNSEDPVWQQHFYVPVAHS----------------AAEVHFFVKDS-DV-VGSELIG 132 (839)
Q Consensus 74 sDPYv~v~l~~~---~~~rT~vi~~~~nP~WnE~F~~~v~~~----------------~~~L~~~V~d~-d~-~~d~~IG 132 (839)
+||||+|...+. ...+|++++++.+|.|||.|.|.+.-. ...|.+++|++ +. .++.|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 899999998542 124899999999999999999987543 23577888883 44 5589999
Q ss_pred EEEEeceeeecCccccceeeecCC-CCC---CCCCCceEEEEEEeeccc
Q 003210 133 TVAIPVEQIYSGGKVEGTYPVLNG-SGK---PCKPGATLTLSIQYTPME 177 (839)
Q Consensus 133 ~~~i~l~~l~~g~~~~~w~~L~~~-~gk---~~~~~g~L~l~l~f~p~~ 177 (839)
++.+|+..+......+.||-|... +|+ ..+..|.+++.+.|+...
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 999999988755557889999753 232 234568899999997543
No 151
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.82 E-value=0.00056 Score=73.58 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=73.8
Q ss_pred chhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhh--cCCCeEEEEEecCC-ccccccccccc
Q 003210 234 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS--QEGVRVLLLVWDDP-TSRSILGYKMD 310 (839)
Q Consensus 234 ~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA--~~GV~VriLvwd~~-~s~~~~~~~~~ 310 (839)
|.++|+.+...|.+||++|+|++- ||-. ....|.+.|..+. +.-.+|.||+ |.. +....++...
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasL------YlG~-----~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~s- 103 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASL------YLGK-----LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSCS- 103 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeee------ccch-----hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccch-
Confidence 346899999999999999999974 3311 3356777777764 4679999997 753 2222211100
Q ss_pred cccccCcHHHHhhhcCCCcEEEec--cCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCC
Q 003210 311 GVMQTHDEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 388 (839)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~v~v~~~--p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~ 388 (839)
|....-..+++. ..|++.++ |...+....++.....-.....|.|+.-+|++ ..+-|.|++.+|+
T Consensus 104 --~llp~~l~kkf~--e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls~dyf 170 (469)
T KOG3964|consen 104 --ALLPVWLGKKFP--ERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLSNDYF 170 (469)
T ss_pred --hhchHHHhhhhh--hhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccchhhhh
Confidence 000000111111 22444443 22222111111000011235789999999994 5788999999866
Q ss_pred CCC
Q 003210 389 DNP 391 (839)
Q Consensus 389 Dt~ 391 (839)
-+.
T Consensus 171 TNR 173 (469)
T KOG3964|consen 171 TNR 173 (469)
T ss_pred ccc
Confidence 443
No 152
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.62 E-value=0.0004 Score=82.46 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=83.6
Q ss_pred HHHHHHHHhccc-----eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 003210 534 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 608 (839)
Q Consensus 534 ~ayl~~I~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~ 608 (839)
...++.|++|.+ .|.|+-.-+...+ .++.+|.+| +.+|++|.|++-...-.+ +..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~ii~aL~~A--a~~Gk~V~v~veLkArfd-e~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKDS-----------------PIIDALIEA--AENGKEVTVVVELKARFD-EEA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCCc-----------------HHHHHHHHH--HHcCCEEEEEEEehhhcc-chh
Confidence 568889999998 8999764443332 477788877 568999999998543111 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEE
Q 003210 609 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 688 (839)
Q Consensus 609 ~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 688 (839)
+ +. ..+.|.++|+++.|. + ....
T Consensus 402 n----i~------------wa~~le~aG~~viyg---------~--------------------------------~~~k 424 (672)
T TIGR03705 402 N----IR------------WARRLEEAGVHVVYG---------V--------------------------------VGLK 424 (672)
T ss_pred h----HH------------HHHHHHHcCCEEEEc---------C--------------------------------CCee
Confidence 1 22 346799999987541 1 0147
Q ss_pred EeeeEEEEee-------eEEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 689 VHSKGMIVDD-------EYVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 689 vHSKlmIVDD-------~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
+|||+++||. .++.|||.|+|...-. .=+++++...+++.
T Consensus 425 ~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~--~y~D~~l~t~~~~i 471 (672)
T TIGR03705 425 THAKLALVVRREGGELRRYVHLGTGNYHPKTAR--LYTDLSLFTADPEI 471 (672)
T ss_pred eeeEEEEEEEeeCCceEEEEEecCCCCCCcccc--cccceeEEEeChHH
Confidence 9999999997 4799999999999765 45788887677654
No 153
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.56 E-value=6e-05 Score=89.91 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=82.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEE-
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVP- 108 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~- 108 (839)
-...|+|.|.|.-|++|+-..-... +||||+.++- ++...||+++++|.||.+||.....
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lqdg~~---------------P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g 1584 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQDGQD---------------PDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDG 1584 (1639)
T ss_pred EEcCceEEEEhhhhcccccccCCCC---------------CCcceeEEecCCchHhhhhhhccccccCCCchhhheeecC
Confidence 3678999999999999963322222 7999999984 2334499999999999999976644
Q ss_pred --ccCC-CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeec
Q 003210 109 --VAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 109 --v~~~-~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
.... .+.|.++|+..+. ..+.++|.+.|||.++....+.-+||+|-
T Consensus 1585 ~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1585 FPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred Cchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 2222 3789999998876 55889999999999988666666899993
No 154
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.48 E-value=9.9e-05 Score=49.87 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred ecccceEEEEecCCCCCCccEEEEEccccCCCC
Q 003210 354 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 386 (839)
Q Consensus 354 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~ 386 (839)
.++|+|++|||++ .+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCCC
Confidence 4689999999996 999999999874
No 155
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00022 Score=80.04 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=79.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC------CEEEEEeeeeeCCCCCeeeeEEEEEccCCC
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA------GAVVGRTFVISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~------~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~ 113 (839)
++|+|..|.+|+=. ..|. -.|||.|.+- +++.+.|++..++..|.+||+|+|.+....
T Consensus 1127 vtvkvvaandlkwq-tsgm---------------FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~ 1190 (1283)
T KOG1011|consen 1127 VTVKVVAANDLKWQ-TSGM---------------FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEG 1190 (1283)
T ss_pred EEEEEEecccccch-hccc---------------cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCC
Confidence 78889999998621 1222 4899999973 355668999999999999999999986542
Q ss_pred ----ceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeec
Q 003210 114 ----AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 114 ----~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
-.|.|.|+|+.- ..|.++|.+.++|.++...+.-..|+||.
T Consensus 1191 ~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1191 GPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 568899998876 45779999999999999776677899994
No 156
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.45 E-value=6.8e-05 Score=88.57 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=75.5
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEE-EeeeeeCCCCCeeeeEEEEEccCC-CceE
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG-RTFVISNSEDPVWQQHFYVPVAHS-AAEV 116 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~-rT~vi~~~~nP~WnE~F~~~v~~~-~~~L 116 (839)
..+|.|++|-+|...|..|. .|||+.+.++++... ++..+.+++||++++.|.+.+.-+ ...+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~---------------adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l 678 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD---------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDL 678 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC---------------cCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcc
Confidence 37899999999999999988 899999999987753 777789999999999999988766 4678
Q ss_pred EEEEEeecCC-CCcceeEEEEece
Q 003210 117 HFFVKDSDVV-GSELIGTVAIPVE 139 (839)
Q Consensus 117 ~~~V~d~d~~-~d~~IG~~~i~l~ 139 (839)
+++|+|+|.. +|+.||+..+.|+
T Consensus 679 ~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 679 IVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred eeEEEEeecccccchhhceehhhh
Confidence 9999999985 5999999999876
No 157
>PLN02964 phosphatidylserine decarboxylase
Probab=97.43 E-value=0.00013 Score=85.80 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=77.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC-c
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-A 114 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~-~ 114 (839)
..|...++|++|+ |++ .|+|..+-.-+.+++||.+.++|.||+|||...|.+.... .
T Consensus 52 ~~~~~~~~~~~~~----~~~------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~ 109 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH 109 (644)
T ss_pred ccCeEEEEeehhh----hcc------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcc
Confidence 5688999999997 433 4777655444444449999999999999999888876543 4
Q ss_pred eEEEEEEeecC-CCCcceeEEEEeceeeecCcccc--ceeeecCCCCC
Q 003210 115 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVE--GTYPVLNGSGK 159 (839)
Q Consensus 115 ~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~--~w~~L~~~~gk 159 (839)
...|.|+|++. ..++++|.+.+++.++...+..+ .-|.++++++.
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 56999999998 56899999999998887554322 23778777653
No 158
>PLN02866 phospholipase D
Probab=97.37 E-value=0.00058 Score=82.85 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIP 598 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP 598 (839)
....+++++|.+||++|||+.=.|.|..+.+... ...++..+...|.++ |++||+|+||+=
T Consensus 344 dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~-----~D~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 344 AAFEAIASAIENAKSEIFITGWWLCPELYLRRPF-----HDHESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEEEccCCceEEEEecC-----CCchHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 6889999999999999999654444332222100 011245566667665 678999999853
No 159
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00023 Score=75.04 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=76.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccCCC
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~~~ 113 (839)
.-|.|++++|..|..+|..+. +||||.+.+.. .-.++|.+.+++.||++|++|.+.+.+..
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~---------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgd 297 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGY---------------SDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGD 297 (362)
T ss_pred CceEEEEEEeeeeeccccCCC---------------CCccceeecCCCcchhhcccCcchhccCCccccccccccCCccc
Confidence 348999999999999999888 89999999842 22348999999999999999998876542
Q ss_pred ---ceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeee
Q 003210 114 ---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 114 ---~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
..+.|+|+|++.. +.+++|-...-+. ..+...+.|+..
T Consensus 298 La~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 298 LAYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRC 339 (362)
T ss_pred hhcceEEEeecccCCCcCccCCCccccccc--ccchhhcCcccc
Confidence 6789999999884 6788887554432 344455566544
No 160
>PF13918 PLDc_3: PLD-like domain
Probab=97.34 E-value=0.00072 Score=66.48 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhh-cCCCeEEEEE
Q 003210 237 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS-QEGVRVLLLV 295 (839)
Q Consensus 237 ~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA-~~GV~VriLv 295 (839)
-.++|+..|++|+++|||+-....|-+....+ ..-...|+++|++|| +|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~--~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYSKP--NRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecCCC--CCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 37899999999999999999888885432222 124568999999986 8999999998
No 161
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=8.8e-05 Score=78.02 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=87.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEE--ccCC
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP--VAHS 112 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~--v~~~ 112 (839)
.++.+|..|++|+.|++.+. .|||++..+.. ....+|++..++.||.|||+-... ..+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~---------------~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~ 158 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGL---------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD 158 (362)
T ss_pred hcceeechhcccchhhhhhh---------------cchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence 48899999999999999888 79999999852 112389999999999999965443 3333
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCcc--ccceeeecCCCCC----CCCCCceEEEEEEeecccc
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK--VEGTYPVLNGSGK----PCKPGATLTLSIQYTPMER 178 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~--~~~w~~L~~~~gk----~~~~~g~L~l~l~f~p~~~ 178 (839)
...+.+.|.|++.+ .++++|+..+++..+.+.+. ...||.-..+.++ .....|++.+++.|.....
T Consensus 159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred hhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCC
Confidence 24567788887774 47899999999988886433 2334332222111 1234568888888765443
No 162
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.12 E-value=0.0034 Score=66.24 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=97.5
Q ss_pred ccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHH
Q 003210 203 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 282 (839)
Q Consensus 203 ~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~ 282 (839)
+.-.+|++|..- |..+.|+| =+.+-+.|.+|++-|-|..=.|+ | ..-|.++|.
T Consensus 116 ~g~Tr~~vy~qP--p~~~~p~I-------------KE~vR~~I~~A~kVIAIVMD~FT-------D-----~dIf~DLle 168 (284)
T PF07894_consen 116 KGVTRATVYFQP--PKDGQPHI-------------KEVVRRMIQQAQKVIAIVMDVFT-------D-----VDIFCDLLE 168 (284)
T ss_pred cCCceEEEEeCC--CCCCCCCH-------------HHHHHHHHHHhcceeEEEeeccc-------c-----HHHHHHHHH
Confidence 344789999864 33455555 57788899999999998865442 2 245667666
Q ss_pred hhhcCCCeEEEEEecCCccccccccccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEE
Q 003210 283 SKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVI 362 (839)
Q Consensus 283 ~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vV 362 (839)
++-+|||-||||+ |......++. ...-+.- ... .-.|++|+..... .+.......+-..-|+|+++
T Consensus 169 Aa~kR~VpVYiLL-D~~~~~~Fl~--Mc~~~~v----~~~--~~~nmrVRsv~G~-----~y~~rsg~k~~G~~~eKF~l 234 (284)
T PF07894_consen 169 AANKRGVPVYILL-DEQNLPHFLE--MCEKLGV----NLQ--HLKNMRVRSVTGC-----TYYSRSGKKFKGQLKEKFML 234 (284)
T ss_pred HHHhcCCcEEEEe-chhcChHHHH--HHHHCCC----Chh--hcCCeEEEEecCC-----eeecCCCCeeeCcccceeEE
Confidence 6669999999998 8765432211 0000000 011 1234444432110 00000011233578999999
Q ss_pred EecCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHH
Q 003210 363 VDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTN 442 (839)
Q Consensus 363 VD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~ 442 (839)
||++ .+..|.--+++.-+ .-| +-+-..++|.+|....+-
T Consensus 235 vD~~--------~V~~GSYSFtWs~~--~~~-------------------------------r~~~~~~tGq~Ve~FD~E 273 (284)
T PF07894_consen 235 VDGD--------KVISGSYSFTWSSS--RVH-------------------------------RNLVTVLTGQIVESFDEE 273 (284)
T ss_pred Eecc--------cccccccceeeccc--ccc-------------------------------cceeEEEeccccchHhHH
Confidence 9997 88888876665311 111 245678999999999999
Q ss_pred HHHHH
Q 003210 443 FEERW 447 (839)
Q Consensus 443 F~~rW 447 (839)
|..-.
T Consensus 274 FR~Ly 278 (284)
T PF07894_consen 274 FRELY 278 (284)
T ss_pred HHHHH
Confidence 87654
No 163
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.99 E-value=0.003 Score=74.00 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=86.1
Q ss_pred CCceecCCCCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEEEeee
Q 003210 19 QNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFV 92 (839)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~------~~~~rT~v 92 (839)
++-++.|.+.+..-. ..-+||.|+|+++.=|..++ ...||.|.+=+ .+..||++
T Consensus 685 pDr~fdPFse~~Vdg-vIA~t~sV~VISgqFLSdrk-------------------vgtyVEVdmfgLP~Dt~Rk~~rtrt 744 (1189)
T KOG1265|consen 685 PDRQFDPFSESPVDG-VIAATLSVTVISGQFLSDRK-------------------VGTYVEVDMFGLPTDTIRKEFRTRT 744 (1189)
T ss_pred CCcCcCCcccCcccc-eEEeeEEEEEEeeeeccccc-------------------cCceEEEEecCCCchhhhhhhhhcc
Confidence 455666766555544 47789999999999887654 35699999732 23348888
Q ss_pred eeC-CCCCeeee-EEEEE--ccCCCceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 93 ISN-SEDPVWQQ-HFYVP--VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 93 i~~-~~nP~WnE-~F~~~--v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
+.. +.||+||| .|.|. +-.....|.|.|++. +..+||+-.+|++.|..|. +.+.|.+..+.+.
T Consensus 745 ~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl 811 (1189)
T KOG1265|consen 745 VQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPL 811 (1189)
T ss_pred ccCCCCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCcc
Confidence 765 99999998 57775 333457899999985 5679999999999998875 4566765566654
No 164
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.00087 Score=71.91 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=83.7
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC-C---EEEEEeeeeeCCCCCeeeeEEEEEc
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-G---AVVGRTFVISNSEDPVWQQHFYVPV 109 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~-~---~~~~rT~vi~~~~nP~WnE~F~~~v 109 (839)
+=-.|.|+|.|++|++|......+. + ++|||+|++- + ....+|+...++.+|.+-+...|.-
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~-----~---------~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~ 330 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKS-----L---------PAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ 330 (405)
T ss_pred hcccCceeEEEEecccccccCCccc-----c---------cCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc
Confidence 3456889999999999976532221 1 7999999973 2 1223899989999998877888877
Q ss_pred cCCCceEEEEEEeec-C-CCCcceeEEEEeceeeecCc-cccceeeecCCC
Q 003210 110 AHSAAEVHFFVKDSD-V-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGS 157 (839)
Q Consensus 110 ~~~~~~L~~~V~d~d-~-~~d~~IG~~~i~l~~l~~g~-~~~~w~~L~~~~ 157 (839)
..+...|.++||-.- . -.+.|+|.++|-+++|-... ..-+||+|+...
T Consensus 331 sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 331 SPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred CCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 777788999998632 2 33679999999999998665 678999998654
No 165
>PF13918 PLDc_3: PLD-like domain
Probab=96.78 E-value=0.026 Score=55.70 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccceEEEeeccccccc------CCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 003210 533 HTAYVKAIRSAQHFIYIENQYFIGSS------YNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE 602 (839)
Q Consensus 533 ~~ayl~~I~~A~~~IyIenqYFi~~~------~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~pe 602 (839)
.+|+++.|..|++||||+---+.|.. ..|+ .|=.+|.+|+ -.|||+|++++..|..
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA-~~R~V~VRlLIS~W~h 145 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAA-IERGVKVRLLISCWKH 145 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHH-HHcCCeEEEEEeecCC
Confidence 58999999999999999977777643 2354 2333443332 2589999999999864
No 166
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.75 E-value=0.00048 Score=81.67 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=79.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEc-------
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPV------- 109 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v------- 109 (839)
|-.|++.|+.|+.|..++..+. +|||+.|.+-++.. .|-++.+++||.||++..|.-
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~---------------sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~ 268 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDE---------------SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEA 268 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccC---------------CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCcc
Confidence 3447788889999988887766 89999999998888 899999999999999888741
Q ss_pred ---cCCCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecC
Q 003210 110 ---AHSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 155 (839)
Q Consensus 110 ---~~~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~ 155 (839)
......+.|+|+|.+.. .++++|+......-.. ..+.-.|+++..
T Consensus 269 ~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~-~~p~lkw~p~~r 317 (1105)
T KOG1326|consen 269 HLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMV-QCPALKWVPTMR 317 (1105)
T ss_pred chhhcCCCeEEEEeehhhhhchHHhhcccccceEEEe-cCCccceEEeec
Confidence 11235689999999984 5899999877554333 234567999974
No 167
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.65 E-value=0.0015 Score=55.90 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=66.8
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEE--EEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC---CceE
Q 003210 42 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVT--IAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 116 (839)
Q Consensus 42 V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~--v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L 116 (839)
++|..|++|.=...-|.. +.-|++ +.+.+....||.+.....||+++|+|.|.+.-. ...|
T Consensus 3 itv~~c~d~s~~~~~~e~--------------~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L 68 (103)
T cd08684 3 ITVLKCKDLSWPSSCGEN--------------PTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRL 68 (103)
T ss_pred EEEEEecccccccccCcC--------------CeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEE
Confidence 688899998754333320 233543 344555556999999999999999999987533 3567
Q ss_pred EEEEEeecCCCCcceeEEEEeceeeecCccccceee
Q 003210 117 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 152 (839)
Q Consensus 117 ~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~ 152 (839)
.|.|+. ...+.+.||.+.+.+.++-. +..+.|.+
T Consensus 69 ~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 69 VFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred EEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 788877 44567899999999987753 34567764
No 168
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.24 E-value=0.019 Score=60.68 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 003210 530 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 609 (839)
Q Consensus 530 ~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~ 609 (839)
.+|.+...++|++|++-|=|..--|.. .+|..-|.+|.. +|+|-|||++... +
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa~-kR~VpVYiLLD~~--------~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAAN-KRGVPVYILLDEQ--------N 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHHH-hcCCcEEEEechh--------c
Confidence 379999999999999999999988874 356666766642 6899999999762 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEE
Q 003210 610 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 689 (839)
Q Consensus 610 ~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 689 (839)
.+ .+.+.-.+.++.... .+.+++.+++- .+.+... .+.+.+-+
T Consensus 186 ~~---------------~Fl~Mc~~~~v~~~~--~~nmrVRsv~G------------------~~y~~rs--g~k~~G~~ 228 (284)
T PF07894_consen 186 LP---------------HFLEMCEKLGVNLQH--LKNMRVRSVTG------------------CTYYSRS--GKKFKGQL 228 (284)
T ss_pred Ch---------------HHHHHHHHCCCChhh--cCCeEEEEecC------------------CeeecCC--CCeeeCcc
Confidence 22 234444455554321 12222222210 0111111 11345679
Q ss_pred eeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeee
Q 003210 690 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAY 726 (839)
Q Consensus 690 HSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~ 726 (839)
|.|.||||.+.|+-||--+..-|-. .|.-+...+.
T Consensus 229 ~eKF~lvD~~~V~~GSYSFtWs~~~--~~r~~~~~~t 263 (284)
T PF07894_consen 229 KEKFMLVDGDKVISGSYSFTWSSSR--VHRNLVTVLT 263 (284)
T ss_pred cceeEEEecccccccccceeecccc--cccceeEEEe
Confidence 9999999999999999998887776 5666666554
No 169
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.88 E-value=0.014 Score=66.50 Aligned_cols=83 Identities=30% Similarity=0.539 Sum_probs=64.8
Q ss_pred EEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE---CC--EEEEEeeeeeCCCCCeeeeEEEEEcc-----CCCc
Q 003210 45 YSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV---AG--AVVGRTFVISNSEDPVWQQHFYVPVA-----HSAA 114 (839)
Q Consensus 45 ~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l---~~--~~~~rT~vi~~~~nP~WnE~F~~~v~-----~~~~ 114 (839)
++|++|.++|.+++ +|||..+.- ++ ..+.+|.++++++||.|-+ |.+.+. +...
T Consensus 143 ~~~~~ld~kd~f~k---------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~ 206 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSK---------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNR 206 (529)
T ss_pred eeeeecCccccccc---------------CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCC
Confidence 45777777787777 999998864 22 3456999999999999995 555432 3357
Q ss_pred eEEEEEEeecCCC-CcceeEEEEeceeeec
Q 003210 115 EVHFFVKDSDVVG-SELIGTVAIPVEQIYS 143 (839)
Q Consensus 115 ~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~ 143 (839)
.+.+.|+|++..+ +++||++..++.++..
T Consensus 207 ~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 207 PIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 8999999999855 5999999999998874
No 170
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.46 Score=55.24 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=63.8
Q ss_pred ccchhhHHHHHHHHHhccc-----ccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccc
Q 003210 232 YVHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILG 306 (839)
Q Consensus 232 y~~~~~f~~l~~aI~~A~~-----~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~ 306 (839)
|-|=+.|+.+.+-|++|-. .|-++ |.|.+. ...|.++|.+||+.|-+|-+|| +....
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~~---dSpIV~ALi~AA~nGKqVtvlV--ELkAR---- 409 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLAIKQT---------LYRTSK---DSPIVRALIDAAENGKQVTVLV--ELKAR---- 409 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEEEEEE---------EEecCC---CCHHHHHHHHHHHcCCeEEEEE--EEhhh----
Confidence 3344689999999999864 23333 445443 4689999999999999999998 11100
Q ss_pred cccccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecC
Q 003210 307 YKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDAD 366 (839)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~ 366 (839)
++. ..+-.+.+.|..+|++|++--.. +--|.|+++|=-+
T Consensus 410 --FDE---E~NI~WAk~LE~AGvhVvyG~~g----------------lKtHAKm~lVvRr 448 (696)
T COG0855 410 --FDE---EANIHWAKRLERAGVHVVYGVVG----------------LKTHAKMLLVVRR 448 (696)
T ss_pred --cCh---hhhhHHHHHHHhCCcEEEecccc----------------eeeeeeEEEEEEe
Confidence 000 01124567788999999863211 3469999888554
No 171
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.77 E-value=0.0074 Score=65.43 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=73.8
Q ss_pred CCcEEEEEEC---CEE-EEEeeeeeCCCCCeeeeEEEEEccCC---C---------ceEEEEEEeecC--CCCcceeEEE
Q 003210 74 SDPYVTIAVA---GAV-VGRTFVISNSEDPVWQQHFYVPVAHS---A---------AEVHFFVKDSDV--VGSELIGTVA 135 (839)
Q Consensus 74 sDPYv~v~l~---~~~-~~rT~vi~~~~nP~WnE~F~~~v~~~---~---------~~L~~~V~d~d~--~~d~~IG~~~ 135 (839)
.|-||++++- ..+ ..+|.+++++.+|.++|.|.+.+... . -.+.|+++.+.. -+|.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4778888762 122 23899999999999999999987652 1 248999999876 3588999999
Q ss_pred EeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 136 IPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 136 i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
|.+..|...-.+...++|.+ |+.. -+|+|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~D--GRK~-vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKD--GRKA-VGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccc--cccc-cCCeeEEEEEEe
Confidence 99988876656778899964 4332 356888888864
No 172
>PLN02352 phospholipase D epsilon
Probab=95.61 E-value=0.032 Score=66.64 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=48.5
Q ss_pred cCceeEEeecCCCCC-CCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCC-----CCCcchH
Q 003210 204 KGGKVTLYQDAHVPD-GCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTL 277 (839)
Q Consensus 204 ~g~~v~l~~dg~~~~-~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~-----~~~~~~l 277 (839)
..+.|+++-+-.... +..|. | .-...+...+.++||++|||+|||+.=-|....+.+..+. .-.+..|
T Consensus 426 ~~w~VQv~RSid~~sa~~~P~-----~-~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eI 499 (758)
T PLN02352 426 RNWKVQVYRSIDHVSASHMPR-----N-LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEI 499 (758)
T ss_pred CcccceEEEecCccccccCCC-----C-CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHH
Confidence 457788887653211 01111 0 0112356899999999999999998422211111222111 1134467
Q ss_pred HHHHHhh--hcCCCeEEEEE
Q 003210 278 GELLRSK--SQEGVRVLLLV 295 (839)
Q Consensus 278 ~~lL~~k--A~~GV~VriLv 295 (839)
.+.|.+| +.++-+|+|++
T Consensus 500 a~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 500 ALKIASKIRAKERFAVYILI 519 (758)
T ss_pred HHHHHHHHhCCCCCEEEEEE
Confidence 7777776 56778888887
No 173
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.57 E-value=0.22 Score=47.70 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=79.9
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE--EEEeeeee-CCCCCeeeeEEEEEccC---C
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV--VGRTFVIS-NSEDPVWQQHFYVPVAH---S 112 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~--~~rT~vi~-~~~nP~WnE~F~~~v~~---~ 112 (839)
.+.|+|.+..+++.. . ...||+...++.. ...|.... .+..-.|||+|.+.+.- .
T Consensus 8 ~~~l~i~~l~~~p~~----~---------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~ 68 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----N---------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDK 68 (143)
T ss_pred EEEEEEEEeECcCCC----C---------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcC
Confidence 378999999999851 1 3456666666554 33444433 36778999999987531 1
Q ss_pred ------CceEEEEEEeecCCCC-cceeEEEEeceeeecC--ccccceeeecCCCCCCCCCCceEEEEEEeeccccc
Q 003210 113 ------AAEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 179 (839)
Q Consensus 113 ------~~~L~~~V~d~d~~~d-~~IG~~~i~l~~l~~g--~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~ 179 (839)
...+.|.|+.....+. ..+|.+.|.|.+.... .....-++|... ....+.|++++++.+...+
T Consensus 69 k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 69 KSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSELRED 140 (143)
T ss_pred CCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccC
Confidence 2458899988754444 5999999999999863 345566777533 1234589999998876544
No 174
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=95.29 E-value=1 Score=49.12 Aligned_cols=137 Identities=19% Similarity=0.215 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHhcc-----cccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccc
Q 003210 236 KCWYDICNAISQAQ-----RLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 310 (839)
Q Consensus 236 ~~f~~l~~aI~~A~-----~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~ 310 (839)
+.|+.+++-|++|- .+|.|+-| |-+ ....+.++|.+||+.|-+|.++| +.... ++
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLY---------R~a---~~S~iv~aLi~AA~nGK~Vtv~v--ELkAR------FD 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLY---------RVA---SNSPIVNALIEAAENGKQVTVLV--ELKAR------FD 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEES---------SS----TT-HHHHHHHHHHHTT-EEEEEE--STTSS------ST
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEE---------ecC---CCCHHHHHHHHHHHcCCEEEEEE--EEecc------cc
Confidence 36888899999884 36777755 433 24689999999999999999998 21111 00
Q ss_pred cccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCC
Q 003210 311 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 390 (839)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt 390 (839)
.. .+-.+.+.|+.+|++|..--+. +--|-|+++|=-+..+ .-+..+++|-=|....
T Consensus 78 Ee---~Ni~Wa~~Le~aGv~ViyG~~g----------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~---- 133 (352)
T PF13090_consen 78 EE---NNIHWAKRLEEAGVHVIYGVPG----------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK---- 133 (352)
T ss_dssp TC---CCCCCCHHHHHCT-EEEE--TT-----------------EE--EEEEEEEEETT-EEEEEEEEESS-SSTT----
T ss_pred HH---HHhHHHhhHHhcCeEEEcCCCC----------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc----
Confidence 00 0113455678899999763221 2469999999665332 2234777776665442
Q ss_pred CCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHH
Q 003210 391 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEE 445 (839)
Q Consensus 391 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~ 445 (839)
+ ..-+-|+++.-.-| .+.|+...|..
T Consensus 134 ----------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 ----------------------------T-ARIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ----------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ----------------------------c-hhheecceeecCCHHHHHHHHHHHHH
Confidence 1 13457888877777 68999999854
No 175
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.24 E-value=0.2 Score=55.06 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=90.3
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC-------
Q 003210 40 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------- 112 (839)
Q Consensus 40 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~------- 112 (839)
+-|.|.++++.+... . ..-.+...++++.. .|--+..+..|.||.+....+...
T Consensus 2 ivl~i~egr~F~~~~---~---------------~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~ 62 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---R---------------HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRL 62 (340)
T ss_pred EEEEEecccCCCCCC---C---------------ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhc
Confidence 568899999998542 1 35678889999988 888888899999999888876532
Q ss_pred -CceEEEEEEeecC--CCCcceeEEEEeceee---ecC--ccccceeeecCCCCCCCCCCceEEEEEEeeccc
Q 003210 113 -AAEVHFFVKDSDV--VGSELIGTVAIPVEQI---YSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 177 (839)
Q Consensus 113 -~~~L~~~V~d~d~--~~d~~IG~~~i~l~~l---~~g--~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~ 177 (839)
...|+++++--|. ...+.||.+.++|..+ ..+ .....||+|++.+.+..+.-.+|.+.|......
T Consensus 63 ~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 63 QRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred cCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 3679999998883 4567999999999988 544 346789999987444444445788887765543
No 176
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.10 E-value=0.073 Score=55.82 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEec
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWD 297 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd 297 (839)
...+.+.+.|++|+++|+|..|. . .-..|.+.|++|.+|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~---------~----~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP---------E----FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G---------G----GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH---------H----HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 35789999999999999999882 0 2357999999999999999999965
No 177
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.73 E-value=0.18 Score=49.29 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEEc--
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPV-- 109 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~v-- 109 (839)
...++|+|.++.++.-.+ . +|-||++.+ +++.+. .|+.+. ..++.|||-..|++
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~---------------~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i 67 (158)
T cd08398 7 NSNLRIKILCATYVNVND---I---------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYI 67 (158)
T ss_pred CCCeEEEEEeeccCCCCC---c---------------CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccch
Confidence 455899999999987422 1 688988865 555442 344333 37899999766654
Q ss_pred cCC--CceEEEEEEeecCCC-----CcceeEEEEece
Q 003210 110 AHS--AAEVHFFVKDSDVVG-----SELIGTVAIPVE 139 (839)
Q Consensus 110 ~~~--~~~L~~~V~d~d~~~-----d~~IG~~~i~l~ 139 (839)
.+. .+.|.|+||+....+ ...||.+.++|=
T Consensus 68 ~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 68 PDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred hcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 433 478999999875421 235777776654
No 178
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.03 E-value=0.15 Score=61.19 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.3
Q ss_pred eecccceEEEEecCCCCCCccEEEEEccccCCCCCCC
Q 003210 353 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYD 389 (839)
Q Consensus 353 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~D 389 (839)
+--=|-|++|||++ .+.+|+.||.+.-.+
T Consensus 699 mIYVHsK~mIvDD~--------~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 699 MIYVHSKLMIVDDE--------YVIIGSANINQRSML 727 (887)
T ss_pred EEEEeeeeEEecCC--------EEEEeecccchhhcc
Confidence 34569999999997 999999999995443
No 179
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.00 E-value=0.38 Score=47.58 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccc
Q 003210 235 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 314 (839)
Q Consensus 235 ~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~ 314 (839)
+.....+.+.|+.|.+...+..|.- .+ .-.-+.+.|..+..+||++|||- ++..+..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit-------~s----G~sll~~~L~d~~~Kgvkgkilt-s~YlnfT----------- 94 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFIT-------ES----GLSLLFDLLLDLVNKGVKGKILT-SDYLNFT----------- 94 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEee-------Cc----cHHHHHHHHHHHhcCCceEEEec-ccccCcc-----------
Confidence 3468999999999999887777632 22 22568899999999999999995 4432211
Q ss_pred cCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCC
Q 003210 315 THDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 394 (839)
Q Consensus 315 ~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~ 394 (839)
+....++.+.-.+|+++.+.-. ...+|-|-.+.-.+. ...|++|+.||++.=.-+ .
T Consensus 95 -dP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~-----~~taiiGSsNlt~sALt~-n-- 150 (198)
T COG3886 95 -DPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT-----GITAIIGSSNLTDSALTV-N-- 150 (198)
T ss_pred -CHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc-----eEEEEEccchhhhhhccc-C--
Confidence 1123344555556777765321 134677776654432 158999999999963311 1
Q ss_pred CccccccccCCCCCCCcccCCCCCCCCCCee-eeeeeeeChHHHHHHHHHHHHHh
Q 003210 395 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWH-DLHSKIDGPAAYDVLTNFEERWR 448 (839)
Q Consensus 395 ~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWh-Dv~~~i~Gpaa~dl~~~F~~rW~ 448 (839)
.-|. -+...-.|..|..+...|+..|.
T Consensus 151 ---------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 151 ---------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred ---------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1111 12233467889999999999998
No 180
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.32 E-value=0.46 Score=47.30 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=48.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEEc--
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPV-- 109 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~v-- 109 (839)
+..++|+|..+.+|...+ .. ++-||++.+ |++.+. .|+.+.-+.++.|||.+.|++
T Consensus 7 ~~~f~i~i~~~~~~~~~~--~~---------------~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i 69 (173)
T cd08693 7 EEKFSITLHKISNLNAAE--RT---------------MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINV 69 (173)
T ss_pred CCCEEEEEEEeccCccCC--CC---------------ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccch
Confidence 345899999999997411 11 567888755 665442 455444467799999777754
Q ss_pred cCC--CceEEEEEEeecC
Q 003210 110 AHS--AAEVHFFVKDSDV 125 (839)
Q Consensus 110 ~~~--~~~L~~~V~d~d~ 125 (839)
.+. .+.|.|+||+...
T Consensus 70 ~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 70 CDLPRMARLCFAIYEVSK 87 (173)
T ss_pred hcCChhHeEEEEEEEecc
Confidence 443 4789999998653
No 181
>PLN03008 Phospholipase D delta
Probab=92.92 E-value=0.36 Score=58.28 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCC-C----CCCcchHHHHHHhh--hcCCCeEEEEE
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-S----PALDCTLGELLRSK--SQEGVRVLLLV 295 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~-~----~~~~~~l~~lL~~k--A~~GV~VriLv 295 (839)
.+..+.+++|++|||.|||+.=-|-...+.+... . .-.+..|...|.+| +.++-+|+|++
T Consensus 567 SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3578999999999999999842222111111100 0 11334566666665 66788899886
No 182
>PLN02270 phospholipase D alpha
Probab=92.51 E-value=0.35 Score=58.25 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHhcccccEEEEEecccceeEecCC-----C----CCCcchHHHHHHhh--hcCCCeEEEEE
Q 003210 235 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-----S----PALDCTLGELLRSK--SQEGVRVLLLV 295 (839)
Q Consensus 235 ~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~-----~----~~~~~~l~~lL~~k--A~~GV~VriLv 295 (839)
.+...+.++||++|+++|||+.=-|....+-...+ . .-.+..|...|.+| +.++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 45788999999999999999742221111111000 0 01234455556555 66789999987
No 183
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.18 E-value=0.83 Score=44.28 Aligned_cols=102 Identities=16% Similarity=0.262 Sum_probs=70.5
Q ss_pred CCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC--------------CceEEEEEEeecCCC-CcceeEEEEec
Q 003210 74 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------------AAEVHFFVKDSDVVG-SELIGTVAIPV 138 (839)
Q Consensus 74 sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~--------------~~~L~~~V~d~d~~~-d~~IG~~~i~l 138 (839)
+-.++-+.++++++ +|+.+..+.+|.++|.|-|++... .+.|.+.|.--|..+ ..++|.-.+.-
T Consensus 34 s~~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 44566677889999 999999999999999999987543 245777777666643 46888888887
Q ss_pred eeeecCccc--cceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 139 EQIYSGGKV--EGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 139 ~~l~~g~~~--~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
..+...+.. .--+.|.+......-..|.|.+++...|.
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 776654333 33344544333212245688888887774
No 184
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.09 E-value=0.47 Score=50.06 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=79.6
Q ss_pred CceeeeeceEEEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEE
Q 003210 30 SLKVLLLHGNLDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVP 108 (839)
Q Consensus 30 ~~~~~l~~G~L~V~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~ 108 (839)
.+...-..|.|.+.++++++|+-... .|. +.+.||++.++.+-.+||++-....-=.|.|.|.+.
T Consensus 43 ~l~~~s~tGiL~~H~~~GRGLr~~p~~kgl--------------t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~D 108 (442)
T KOG1452|consen 43 HLRLVSSTGILYFHAYNGRGLRMTPQQKGL--------------TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHD 108 (442)
T ss_pred eeeeecccceEEEEEecccccccChhccCc--------------eeeeeeeeeecccCccccccccCCCCccchhhceee
Confidence 34455678999999999999975432 222 268999999998887788887777777899999998
Q ss_pred ccCCCceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 109 VAHSAAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 109 v~~~~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
+... ..+.+-|+.|+. ..+.+.=..-+.+..+. .+.-++-+.|. -+| .|++-++|.+.+
T Consensus 109 vv~~-~vl~~lvySW~pq~RHKLC~~g~l~~~~v~-rqspd~~~Al~---leP---rgq~~~r~~~~D 168 (442)
T KOG1452|consen 109 VVNI-EVLHYLVYSWPPQRRHKLCHLGLLEAFVVD-RQSPDRVVALY---LEP---RGQPPLRLPLAD 168 (442)
T ss_pred cccc-eeeeEEEeecCchhhccccccchhhhhhhh-hcCCcceeeee---ccc---CCCCceecccCC
Confidence 7643 477888998887 33443222223333332 12223333332 122 236667777654
No 185
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.95 E-value=0.7 Score=45.35 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=47.6
Q ss_pred CCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEEcc--CC--CceEEEEEEeecCC-CCcceeEEEEecee
Q 003210 74 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVA--HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQ 140 (839)
Q Consensus 74 sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~v~--~~--~~~L~~~V~d~d~~-~d~~IG~~~i~l~~ 140 (839)
+|.||++.+ +++.+. +|+.+.-+..+.|||-..|++. +. .+.|.|+||+.+.. ....||.+.++|=+
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 788998876 554432 5655555778999997777653 33 47899999998754 35588888887643
No 186
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.83 E-value=0.92 Score=45.11 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=56.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---Eeeeee--C--CCCCeeeeEEEE
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVIS--N--SEDPVWQQHFYV 107 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~--~--~~nP~WnE~F~~ 107 (839)
...+.|+|.++.+++....... .|-||.+.+ +++.+. .|+... + ...+.|||...|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~---------------~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F 71 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSF---------------EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEF 71 (171)
T ss_pred cccEEEEEEEeecCChHHhhcc---------------ccEEEEEEEEECCEECcCceeccccccccCccccccccceEEC
Confidence 4558999999999986532212 688998876 555442 333211 1 346789997776
Q ss_pred Ec--cCC--CceEEEEEEeecCCC----------CcceeEEEEece
Q 003210 108 PV--AHS--AAEVHFFVKDSDVVG----------SELIGTVAIPVE 139 (839)
Q Consensus 108 ~v--~~~--~~~L~~~V~d~d~~~----------d~~IG~~~i~l~ 139 (839)
++ .+. .+.|.|++++....+ +..||.+.++|=
T Consensus 72 ~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 72 PIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred ccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 64 332 478999999866532 346777666653
No 187
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.74 E-value=1.3 Score=43.18 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=55.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEEc--cC
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPV--AH 111 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~v--~~ 111 (839)
.++|+|....++...+. .. .+.||++.+ +++... .|+......++.|||...|++ .+
T Consensus 9 ~~~i~i~~~~~~~~~~~-~~---------------~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~ 72 (156)
T cd08380 9 NLRIKIHGITNINLLDS-ED---------------LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISD 72 (156)
T ss_pred CeEEEEEeeccccccCC-Cc---------------eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhc
Confidence 47888888887764111 11 567887765 554321 333333347899999777764 33
Q ss_pred C--CceEEEEEEeecCCC---CcceeEEEEecee
Q 003210 112 S--AAEVHFFVKDSDVVG---SELIGTVAIPVEQ 140 (839)
Q Consensus 112 ~--~~~L~~~V~d~d~~~---d~~IG~~~i~l~~ 140 (839)
. .+.|.|+|++.+..+ ...||.+.++|=+
T Consensus 73 LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 73 LPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred CChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 3 478999999977643 4689998888754
No 188
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=89.89 E-value=1.4 Score=43.71 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCcEEEEEECCEEEEEeeeee--CCCCCeeeeEEEEEccCCCceEEEEEEeecCCCCcceeEEEEeceeee
Q 003210 74 SDPYVTIAVAGAVVGRTFVIS--NSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIY 142 (839)
Q Consensus 74 sDPYv~v~l~~~~~~rT~vi~--~~~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~ 142 (839)
..-|++|.++++.+.+|+... ....=.+||.|.+.+..-.+.|.++||......+.+|+++.+|+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 467999999999998887754 355567889999999888889999999988788999999999986443
No 189
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.86 E-value=2.8 Score=36.67 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEEEEEeecCCCCcceeEEEEeceee
Q 003210 74 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQI 141 (839)
Q Consensus 74 sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l 141 (839)
++-.+.+.+++..+++|.-.. ..+..|+|+|.|.+.- .+.|+|.|+=+|- ..+-|...+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 577899999999998887643 4688999999999874 4589999987665 45777788888874
No 190
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.84 E-value=1.9 Score=41.32 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=43.2
Q ss_pred CcEEEEEE--CCEEE----EEeeeeeCC-CCCeeeeEEEEE--ccCC--CceEEEEEEeecCCCC-----cceeEEEEec
Q 003210 75 DPYVTIAV--AGAVV----GRTFVISNS-EDPVWQQHFYVP--VAHS--AAEVHFFVKDSDVVGS-----ELIGTVAIPV 138 (839)
Q Consensus 75 DPYv~v~l--~~~~~----~rT~vi~~~-~nP~WnE~F~~~--v~~~--~~~L~~~V~d~d~~~d-----~~IG~~~i~l 138 (839)
+.||.+.+ |++.. ..|+...-+ .++.|||.+.|+ +.+. .+.|.|+|+..+.... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 44666655 55433 256555555 799999966665 4443 5789999998776433 5888888887
Q ss_pred eee
Q 003210 139 EQI 141 (839)
Q Consensus 139 ~~l 141 (839)
=+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 543
No 191
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.81 E-value=4.7 Score=40.53 Aligned_cols=52 Identities=21% Similarity=0.533 Sum_probs=39.3
Q ss_pred EEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeecCC--C-CcceeEEEEece
Q 003210 88 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--G-SELIGTVAIPVE 139 (839)
Q Consensus 88 ~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d~~--~-d~~IG~~~i~l~ 139 (839)
++|-|...+.+|.|||++.+.++.. ...|.|+++..... + ...+|-+.+||-
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4899999999999999999987643 47899988764432 1 256888777774
No 192
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=87.22 E-value=5.3 Score=39.88 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=43.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE--EeeeeeCCCCCeeeeEEEEEc--cC
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG--RTFVISNSEDPVWQQHFYVPV--AH 111 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~--rT~vi~~~~nP~WnE~F~~~v--~~ 111 (839)
..++|+|..+. .++.+.... ..-||++.+ +++... +|+....+.+|.|||-..|++ .+
T Consensus 10 ~~friki~~~~-~~~~~~~~~---------------~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~d 73 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTD---------------LTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKD 73 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCc---------------eEEEEEEEEEECCeecccceeeccCCCCCccccccEECcccccc
Confidence 34788888886 333321111 234666543 443321 556555678899999766654 44
Q ss_pred C--CceEEEEEEeec
Q 003210 112 S--AAEVHFFVKDSD 124 (839)
Q Consensus 112 ~--~~~L~~~V~d~d 124 (839)
. .+.|.|+||+..
T Consensus 74 LP~~arLc~ti~~~~ 88 (178)
T cd08399 74 LPKGALLNLQIYCGK 88 (178)
T ss_pred CChhhEEEEEEEEEe
Confidence 3 478999999864
No 193
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.96 E-value=3.4 Score=41.63 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=40.2
Q ss_pred EEEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeecC--CC---CcceeEEEEece
Q 003210 87 VGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV--VG---SELIGTVAIPVE 139 (839)
Q Consensus 87 ~~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d~--~~---d~~IG~~~i~l~ 139 (839)
.++|-|...+.+|.|||++.+.++-. ...|.|+++.... .+ ...+|-+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 34888888899999999999987643 4789999976543 12 247888888874
No 194
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=86.49 E-value=1.7 Score=47.46 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCcc
Q 003210 576 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 655 (839)
Q Consensus 576 ~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~ 655 (839)
.++.+|.+|.+ .|=+|.+++-...-.+. .++. +| .+.|.++|+++.|. +
T Consensus 51 ~iv~aLi~AA~--nGK~Vtv~vELkARFDE-e~Ni----~W------------a~~Le~aGv~ViyG---------~--- 99 (352)
T PF13090_consen 51 PIVNALIEAAE--NGKQVTVLVELKARFDE-ENNI----HW------------AKRLEEAGVHVIYG---------V--- 99 (352)
T ss_dssp HHHHHHHHHHH--TT-EEEEEESTTSSSTT-CCCC----CC------------CHHHHHCT-EEEE--------------
T ss_pred HHHHHHHHHHH--cCCEEEEEEEEeccccH-HHHh----HH------------HhhHHhcCeEEEcC---------C---
Confidence 57888888855 56777777766442221 1222 23 46799999987541 1
Q ss_pred ccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEe-------eeEEEEeccccCCCCCCCCCCcceEEeeecc
Q 003210 656 EVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVD-------DEYVILGSANINQRSMEGTRDTEIAMGAYQP 728 (839)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD-------D~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 728 (839)
...-+|||+++|= -+|+-+|+-|+|...-. .=|.+++..-++
T Consensus 100 -----------------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~ 148 (352)
T PF13090_consen 100 -----------------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADP 148 (352)
T ss_dssp -----------------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--H
T ss_pred -----------------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCH
Confidence 0247999999885 38999999999998876 677888888787
Q ss_pred hhh
Q 003210 729 EYT 731 (839)
Q Consensus 729 ~~~ 731 (839)
+.+
T Consensus 149 ~i~ 151 (352)
T PF13090_consen 149 EIG 151 (352)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 195
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=85.91 E-value=2.4 Score=42.60 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=32.5
Q ss_pred EEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeecCC--C--CcceeEEEEecee
Q 003210 88 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--G--SELIGTVAIPVEQ 140 (839)
Q Consensus 88 ~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d~~--~--d~~IG~~~i~l~~ 140 (839)
+.|.|...+.+|.|+|+|.+.+... ...|.|++++.... + +..+|.+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3778888889999999999987644 46799999886552 2 2688888888865
No 196
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=82.95 E-value=4.7 Score=36.69 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=49.8
Q ss_pred EEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC--------CceEEEEEEeecCCCCcceeEEEEeceeeecCc--c
Q 003210 77 YVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGG--K 146 (839)
Q Consensus 77 Yv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~--------~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~--~ 146 (839)
||++++-.-+...|.++. +.+|.+|-+-++.|.-. ...+.|+++.--......||.+.|++..+.... .
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666554443777766 89999998766666533 267889988755444679999999999988433 3
Q ss_pred ccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 147 VEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 147 ~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
+.....|.+.+|+. -|.|...++.
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEe
Confidence 56677887777764 3577777764
No 197
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=82.30 E-value=5.7 Score=47.87 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=81.7
Q ss_pred CCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeee
Q 003210 27 TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQ 102 (839)
Q Consensus 27 ~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~Wn 102 (839)
.+....+.+..|.+++.+.+|..|..- ...||+..++. ...++|+++.++..|.||
T Consensus 748 NddD~eSpl~ygflh~~vhsat~lkqs--------------------~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~n 807 (1112)
T KOG4269|consen 748 NDDDDESPLLYGFLHVIVHSATGLKQS--------------------RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWN 807 (1112)
T ss_pred ccccccCcccccceeeeeccccccccc--------------------cceeeehhhhhhccccccccceeeecccCCCCC
Confidence 455666778899999999999999731 46788887642 334599999999999999
Q ss_pred eEEEEEccCCCceEEEEEEeecC-----------CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEE
Q 003210 103 QHFYVPVAHSAAEVHFFVKDSDV-----------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 171 (839)
Q Consensus 103 E~F~~~v~~~~~~L~~~V~d~d~-----------~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l 171 (839)
++|++++.... .+.|..++++. ..+...|+..+.+.--... ...|+.-...-. +..+...|
T Consensus 808 pe~hv~~~~sq-S~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~n-----~~~ve~~v 879 (1112)
T KOG4269|consen 808 PEKHVPVIESQ-SSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDMN-----GIVVETSV 879 (1112)
T ss_pred hhcccchhhcc-ccchhhhcccchHHHhhhccchhhcccccccccccCccccc--cccCccChhhhc-----CcceeeeE
Confidence 99999875432 33455555442 1244667766665432211 124654432211 12667788
Q ss_pred Eeecccccc
Q 003210 172 QYTPMERLS 180 (839)
Q Consensus 172 ~f~p~~~~~ 180 (839)
.|.+.....
T Consensus 880 ~~ssss~Ss 888 (1112)
T KOG4269|consen 880 KFSSSSTSS 888 (1112)
T ss_pred Eeccccccc
Confidence 888766544
No 198
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=80.80 E-value=3.9 Score=47.18 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=59.4
Q ss_pred EEEEEeeeeeCCCCCeeeeEEEEEccC-CCceEEEEEEeecC-----CCCcceeEEEEeceeeecCccccceeeecCCCC
Q 003210 85 AVVGRTFVISNSEDPVWQQHFYVPVAH-SAAEVHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 158 (839)
Q Consensus 85 ~~~~rT~vi~~~~nP~WnE~F~~~v~~-~~~~L~~~V~d~d~-----~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~g 158 (839)
.++++|.++.+.+||.|-+.|.+.-.. ..+.|.|.++|-+. ...+|+|++...+.++........-+.+ +.+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~--~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL--KPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc--ccC
Confidence 345699999999999999988876443 35789999998765 3478999999999988854333332322 333
Q ss_pred CCCCCCceEEEEEE
Q 003210 159 KPCKPGATLTLSIQ 172 (839)
Q Consensus 159 k~~~~~g~L~l~l~ 172 (839)
++. +.|.|.+.+.
T Consensus 118 ~~~-~~g~iti~ae 130 (529)
T KOG1327|consen 118 KNA-GSGTITISAE 130 (529)
T ss_pred ccC-CcccEEEEee
Confidence 443 3446666655
No 199
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=80.61 E-value=8.8 Score=34.42 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=34.3
Q ss_pred CCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEEc--cCC--CceEEEEEEeec
Q 003210 74 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPV--AHS--AAEVHFFVKDSD 124 (839)
Q Consensus 74 sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~v--~~~--~~~L~~~V~d~d 124 (839)
++.||++.+ +++... .|+.+.-...+.|||-..|++ .+. .+.|.|+||+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478888876 555432 455444466699999776654 333 478999999853
No 200
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=77.18 E-value=8 Score=45.42 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCcc
Q 003210 576 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 655 (839)
Q Consensus 576 ~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~ 655 (839)
.|..++++|.. .|-+|.+|+-...-.+ + ..-++|+ ++|.++|+++.|.-
T Consensus 385 pIV~ALi~AA~--nGKqVtvlVELkARFD-E----E~NI~WA------------k~LE~AGvhVvyG~------------ 433 (696)
T COG0855 385 PIVRALIDAAE--NGKQVTVLVELKARFD-E----EANIHWA------------KRLERAGVHVVYGV------------ 433 (696)
T ss_pred HHHHHHHHHHH--cCCeEEEEEEEhhhcC-h----hhhhHHH------------HHHHhCCcEEEecc------------
Confidence 47788888855 4555666665432111 1 2234554 56999999876421
Q ss_pred ccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEe-------eeEEEEeccccCCCCCCCCCCcceEEeeecc
Q 003210 656 EVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVD-------DEYVILGSANINQRSMEGTRDTEIAMGAYQP 728 (839)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD-------D~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 728 (839)
...-+|||+++|= -+|+-+|+-|.|..+-. .=|.+++..-|+
T Consensus 434 -----------------------------~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~ 482 (696)
T COG0855 434 -----------------------------VGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADP 482 (696)
T ss_pred -----------------------------cceeeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCH
Confidence 0146899999884 27999999999998876 556666666666
Q ss_pred hhh
Q 003210 729 EYT 731 (839)
Q Consensus 729 ~~~ 731 (839)
+..
T Consensus 483 ~i~ 485 (696)
T COG0855 483 EIG 485 (696)
T ss_pred HHH
Confidence 543
No 201
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=74.55 E-value=3.2 Score=44.90 Aligned_cols=41 Identities=32% Similarity=0.330 Sum_probs=30.0
Q ss_pred EEEeeeEEEE-e---eeEEEEeccccCC-CCCCCCCCcceEEeeecch
Q 003210 687 IYVHSKGMIV-D---DEYVILGSANINQ-RSMEGTRDTEIAMGAYQPE 729 (839)
Q Consensus 687 iyvHSKlmIV-D---D~~~iIGSANln~-RSm~g~~DsEi~v~i~d~~ 729 (839)
+-+|+|+.+. . +.-++|||||+.. -.+. .+-.| +++..|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 4689999999 2 4689999999988 3332 26779 66666654
No 202
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=73.65 E-value=9.5 Score=38.13 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=36.8
Q ss_pred eeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeecCCC------CcceeEEEEecee
Q 003210 90 TFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG------SELIGTVAIPVEQ 140 (839)
Q Consensus 90 T~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d~~~------d~~IG~~~i~l~~ 140 (839)
|.++....+|.|+|+|.+.++-. ...|.|++++-+... ...+|.+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444449999999999987533 477999998866422 4578888888764
No 203
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=71.69 E-value=44 Score=33.46 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHH-HHHHHHHHHHcCCCcEEEEEecCC
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPME-IALKIADKIRAHERFAAYIVIPMW 600 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~-ia~~ia~~~~~~~g~~V~ivlP~~ 600 (839)
.|...++..|+.|+.|..+. -|+..+ +.. +...+..+ .++|++++|+....
T Consensus 39 ~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d~--~~Kgvkgkilts~Y 90 (198)
T COG3886 39 KILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLDL--VNKGVKGKILTSDY 90 (198)
T ss_pred hHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHHH--hcCCceEEEecccc
Confidence 68999999999999988877 465543 112 22223333 47899999999764
No 204
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=71.42 E-value=14 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=39.0
Q ss_pred EEEEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeecCCC-------CcceeEEEEece
Q 003210 86 VVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG-------SELIGTVAIPVE 139 (839)
Q Consensus 86 ~~~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d~~~-------d~~IG~~~i~l~ 139 (839)
..+.|.|...+.+|.|+|++.+.+.-. ...|.|+.++.+... ...+|.+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 344888888999999999999987643 467999998855411 235666666654
No 205
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=68.98 E-value=37 Score=39.54 Aligned_cols=115 Identities=13% Similarity=0.164 Sum_probs=77.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCce
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~ 115 (839)
+.-.++|.|.+.++|+....+. =-||++.+.+.+. +|--. ....|.|.-.=.|...++...
T Consensus 339 la~smevvvmevqglksvapnr-----------------ivyctmevegekl-qtdqa-easkp~wgtqgdfstthplpv 399 (1218)
T KOG3543|consen 339 LALSMEVVVMEVQGLKSVAPNR-----------------IVYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPV 399 (1218)
T ss_pred EEeeeeEEEeeeccccccCCCe-----------------eEEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCce
Confidence 4445899999999998653321 3599999999888 66543 367799998777888888777
Q ss_pred EEEEEEeecC----CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEE
Q 003210 116 VHFFVKDSDV----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 172 (839)
Q Consensus 116 L~~~V~d~d~----~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~ 172 (839)
+++.++-... ..|.-+|++.+.-..-. .....|+.+.-++..+.. .-+|+|-++
T Consensus 400 vkvklftestgvlaledkelgrvil~ptpns--~ks~ewh~mtvpknsqdq-dlkiklavr 457 (1218)
T KOG3543|consen 400 VKVKLFTESTGVLALEDKELGRVILQPTPNS--AKSPEWHTMTVPKNSQDQ-DLKIKLAVR 457 (1218)
T ss_pred eEEEEEeecceeEEeechhhCeEEEecCCCC--cCCccceeeecCCCCcCc-cceEEEEEe
Confidence 7777776554 45788999887543222 224579988766544432 225555555
No 206
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.61 E-value=64 Score=35.12 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=64.9
Q ss_pred CcEEEEEECCEEEEEeeeeeCCCCC--eeeeEEEEEccCCCceEEEEEEeecCCCCcceeEEEEecee-eecC-ccccce
Q 003210 75 DPYVTIAVAGAVVGRTFVISNSEDP--VWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQ-IYSG-GKVEGT 150 (839)
Q Consensus 75 DPYv~v~l~~~~~~rT~vi~~~~nP--~WnE~F~~~v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~-l~~g-~~~~~w 150 (839)
..|+.++.|...+ +|..+.-+..- .-.|...+.+..-...|.+.|+-....+..-||.+.|.+.+ +..+ -+-..|
T Consensus 75 hiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkW 153 (508)
T PTZ00447 75 HIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEW 153 (508)
T ss_pred eEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccce
Confidence 6799999998887 66554432222 23355556666667889999998888888899999998853 4333 235789
Q ss_pred eeecCCCCCCCCCCceEEEEEEeec
Q 003210 151 YPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 151 ~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
|-|. ++|+. ..++.|+|.-
T Consensus 154 y~c~-kDGq~-----~cRIqLSFhK 172 (508)
T PTZ00447 154 FVCF-KDGQE-----ICKVQMSFYK 172 (508)
T ss_pred EEEe-cCCce-----eeeEEEEehh
Confidence 9995 77765 3466666653
No 207
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=62.56 E-value=24 Score=36.91 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 003210 530 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 599 (839)
Q Consensus 530 ~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~ 599 (839)
..|.+-..++|++|++.|||..+.=. -..+...|.+|. .+|++|.+++..
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~--~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAV--DRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHH--HTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHH--HCCCEEEEEEeC
Confidence 47889999999999999999865321 124556666663 589999999987
No 208
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=61.57 E-value=29 Score=34.93 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=31.5
Q ss_pred EEEEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeec
Q 003210 86 VVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSD 124 (839)
Q Consensus 86 ~~~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d 124 (839)
..+.|.|...+.+|.|+|++.+.+.-. ...|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 445888988899999999999987533 467999998865
No 209
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=56.52 E-value=4.7 Score=46.57 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=26.7
Q ss_pred EEEeeeEEEEee-------eEEEEeccccCCCCCCCC----------CCcceEEeee
Q 003210 687 IYVHSKGMIVDD-------EYVILGSANINQRSMEGT----------RDTEIAMGAY 726 (839)
Q Consensus 687 iyvHSKlmIVDD-------~~~iIGSANln~RSm~g~----------~DsEi~v~i~ 726 (839)
...|+|+++... .|+++|||||-.-.+. . +|.|++|++.
T Consensus 347 ~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 347 APPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp S-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred cCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEEe
Confidence 567999999987 6999999999654432 3 8999999983
No 210
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=55.93 E-value=14 Score=40.89 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 600 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~ 600 (839)
..++.+.+.|..||+.|+|.+-|.-.. ..++...|..++..+...+|-|++...
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 468889999999999999999988643 457888999999899999999999764
No 211
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=53.55 E-value=1.6e+02 Score=33.14 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCcEEEEEECCEEEEEeeeeeC----CCCC-eee---eEEEEEccC------C------CceEEEEEEeecC-------C
Q 003210 74 SDPYVTIAVAGAVVGRTFVISN----SEDP-VWQ---QHFYVPVAH------S------AAEVHFFVKDSDV-------V 126 (839)
Q Consensus 74 sDPYv~v~l~~~~~~rT~vi~~----~~nP-~Wn---E~F~~~v~~------~------~~~L~~~V~d~d~-------~ 126 (839)
+.+||+|.|.+-.. +|..+.= +.+| .=+ -.|++.-.+ . ...|+|.||--.. .
T Consensus 36 spCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 36 SPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 67899999988655 4444321 1221 111 245554211 1 1468899987432 2
Q ss_pred CCcceeEEEEeceeee--cCcc---ccceeeecCCCC-CCCCCCceEEEEEEeecc
Q 003210 127 GSELIGTVAIPVEQIY--SGGK---VEGTYPVLNGSG-KPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 127 ~d~~IG~~~i~l~~l~--~g~~---~~~w~~L~~~~g-k~~~~~g~L~l~l~f~p~ 176 (839)
+..+||++.|||+ +. .+.. ..+|+.|-.... +..+...+|||.++-.|.
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 3579999999997 33 2222 478999832211 112246799999996554
No 212
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=52.99 E-value=15 Score=41.61 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=33.4
Q ss_pred ceeEEEEecee-eecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 130 LIGTVAIPVEQ-IYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 130 ~IG~~~i~l~~-l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
++|.+.||++. +..+...+.||++.+...++.+ .+.+ ++++|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeee
Confidence 58999999999 5566778999999986665543 4466 7777754
No 213
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.15 E-value=18 Score=43.01 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=54.1
Q ss_pred CCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCceEEEEEEeecC-CCCcceeEEEEeceeeec-Ccccccee
Q 003210 74 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS-GGKVEGTY 151 (839)
Q Consensus 74 sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~-g~~~~~w~ 151 (839)
-+||+.|.+.-.....+.+.+.+..|.|+|+|.+.+. ....+.|.|+.... ..+.+...+++-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 5899999998776667777778999999999999955 44578888887643 223444444454444442 22356788
Q ss_pred ee
Q 003210 152 PV 153 (839)
Q Consensus 152 ~L 153 (839)
.+
T Consensus 107 ~~ 108 (694)
T KOG0694|consen 107 LI 108 (694)
T ss_pred cc
Confidence 76
No 214
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=38.54 E-value=3.2 Score=48.00 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=57.9
Q ss_pred cCCCCCCCceecCCCCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeee
Q 003210 13 SDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFV 92 (839)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~v 92 (839)
+.|.++.++..+|...+..- +.|...++++.|.++++..- -..++ ...++++...++.+.. ||+.
T Consensus 258 s~s~~~~~e~~~~~~~~~dd---~~gi~ll~lI~a~~~~~i~~---~~~~~--------f~~~~~~itsf~~~~f-rt~~ 322 (975)
T KOG2419|consen 258 SVSLNDFEEADHPNVHDADD---FTGIALLTLIGAEMKYDIVE---DVAKL--------FKDKWLAITSFGEQTF-RTEI 322 (975)
T ss_pred cccccccccccCccccccch---hhhhHHHHHhhhhcccchhh---hhhhc--------cCCCchheeecchhhh-hhhh
Confidence 45566666666665322221 23445566777777653210 01111 2279999999999998 9999
Q ss_pred eeCCCCCeeeeEEEEEccCC--CceEEEEEEeec
Q 003210 93 ISNSEDPVWQQHFYVPVAHS--AAEVHFFVKDSD 124 (839)
Q Consensus 93 i~~~~nP~WnE~F~~~v~~~--~~~L~~~V~d~d 124 (839)
...+.+|+|||. .+.+.+. ...|...|.+++
T Consensus 323 ~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 323 SDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hccccccccccc-ccccccchhhHHHhhhccccc
Confidence 999999999996 4444432 234444444443
No 215
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=31.08 E-value=4.5e+02 Score=25.83 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=42.9
Q ss_pred CCcEEEEEE---------CCEE-EEEeeeeeC-----CCCCeeeeEEEEEccCC----CceEEEEEEeecCC-CCcceeE
Q 003210 74 SDPYVTIAV---------AGAV-VGRTFVISN-----SEDPVWQQHFYVPVAHS----AAEVHFFVKDSDVV-GSELIGT 133 (839)
Q Consensus 74 sDPYv~v~l---------~~~~-~~rT~vi~~-----~~nP~WnE~F~~~v~~~----~~~L~~~V~d~d~~-~d~~IG~ 133 (839)
.+.||+..+ .+.. .+.|.+... +..-.||.-|.+..... -..|.|+|+..|.. .+.+.|.
T Consensus 17 ~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GY 96 (168)
T PF07162_consen 17 DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGY 96 (168)
T ss_pred CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEE
Confidence 456777765 1223 446666532 44578998777765332 26899999999884 4678888
Q ss_pred EEEec
Q 003210 134 VAIPV 138 (839)
Q Consensus 134 ~~i~l 138 (839)
..+.|
T Consensus 97 G~~~l 101 (168)
T PF07162_consen 97 GFCHL 101 (168)
T ss_pred eEEEe
Confidence 77766
No 216
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=28.67 E-value=1.6e+02 Score=27.38 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHhcccccEEEEEecccceeEecCCC-----CCCcchHHHHHHhhhcCCCeEEE
Q 003210 234 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSKSQEGVRVLL 293 (839)
Q Consensus 234 ~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~-----~~~~~~l~~lL~~kA~~GV~Vri 293 (839)
+.++|..+.=|+..|.---...-|+.....+|.+.+. .+...+|.++.+++.+.||++++
T Consensus 16 ~~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yv 80 (120)
T COG2044 16 PERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYV 80 (120)
T ss_pred HHHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEE
Confidence 3567777777777665433333344445566665332 23458899999999999988886
No 217
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=28.35 E-value=38 Score=39.14 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=22.9
Q ss_pred EEeeeEEEE---ee-eEEEEeccccCCCCCCCCCCcceEEeeec
Q 003210 688 YVHSKGMIV---DD-EYVILGSANINQRSMEGTRDTEIAMGAYQ 727 (839)
Q Consensus 688 yvHSKlmIV---DD-~~~iIGSANln~RSm~g~~DsEi~v~i~d 727 (839)
--|||+||. |+ --++|.||||-..-+. +-|=++-+-|
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~---~~~q~vw~~d 141 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDWN---NKTQGVWIQD 141 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHHC---SSB-EEEE--
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHHC---CcceeEEEec
Confidence 469999998 66 7899999999887664 4455555433
No 218
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=23.18 E-value=1.6e+02 Score=25.38 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=43.1
Q ss_pred CceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhccc-ccEEEEEecccceeEecCCCCCCcchHHHHHHh
Q 003210 205 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQR-LIYITGWSVWHKVKLVRDASPALDCTLGELLRS 283 (839)
Q Consensus 205 g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~-~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~ 283 (839)
|+++.||+-|.. ...+.|.++|+.+++ -+++..-.++. .++.+....-..|.++..+
T Consensus 3 ~a~~SLYPmg~~-------------------dy~~~I~~~i~~~~~~gl~~~t~~~sT---~l~G~~~~Vf~~l~~~~~~ 60 (81)
T PF07615_consen 3 GAQFSLYPMGTD-------------------DYMDVILGAIDRLDDSGLWVETDHYST---QLRGDEEDVFDALEAAFER 60 (81)
T ss_dssp EEEEEEEETTST-------------------THHHHHHHHHHHCHHTTSEEEEETTEE---EEECBHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCc-------------------cHHHHHHHHHHHHhhcCcEEeecccEE---EEECCHHHHHHHHHHHHHH
Confidence 688999988653 246899999999874 57777654332 3343321122345555566
Q ss_pred hhcCCCeEEEEE
Q 003210 284 KSQEGVRVLLLV 295 (839)
Q Consensus 284 kA~~GV~VriLv 295 (839)
++++|..|-+-+
T Consensus 61 a~~~~~H~v~~~ 72 (81)
T PF07615_consen 61 AAEEGPHVVMVV 72 (81)
T ss_dssp HHCCSSSEEEEE
T ss_pred HhccCCeEEEEE
Confidence 778887666544
No 219
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.70 E-value=1.3e+02 Score=31.15 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHHHHhcc---cccEEEEEecccceeEecCCC-CCCcchHHHHHHhhhcCCCe-EEEEE-ecC
Q 003210 239 YDICNAISQAQ---RLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKSQEGVR-VLLLV-WDD 298 (839)
Q Consensus 239 ~~l~~aI~~A~---~~I~I~~w~~~~~~~l~r~~~-~~~~~~l~~lL~~kA~~GV~-VriLv-wd~ 298 (839)
+.+.++|+.|+ ..++|.| |..++. .+.-.-|..+|+.++++||+ |+|=+ .|.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 45666666666 4899998 566654 33446788888889999986 65433 254
No 220
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=21.52 E-value=2.7e+02 Score=34.52 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=39.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE----CCEEEEE---eeeeeCCCCCeeeeE--EEEE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV----AGAVVGR---TFVISNSEDPVWQQH--FYVP 108 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l----~~~~~~r---T~vi~~~~nP~WnE~--F~~~ 108 (839)
.-++|+++.+.++--. .. .|-+|.|.. |++...+ |.-+..+.+|.|||. |.|+
T Consensus 343 ~~frI~l~~is~~n~~---~t---------------~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~ 404 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP---ET---------------VDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIY 404 (1076)
T ss_pred CceEEEEeeccccCCC---cc---------------cceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeee
Confidence 3478888877665321 11 466776665 4554433 333344889999994 5566
Q ss_pred ccCCC--ceEEEEEEe
Q 003210 109 VAHSA--AEVHFFVKD 122 (839)
Q Consensus 109 v~~~~--~~L~~~V~d 122 (839)
+.+.. ..|.|.|+.
T Consensus 405 i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 405 IKDLPRMARLCLAIYA 420 (1076)
T ss_pred cCCCChhhhheeeeeE
Confidence 66553 566666654
Done!