Query 003210
Match_columns 839
No_of_seqs 585 out of 3678
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 2.6E-36 8.8E-41 350.2 15.7 381 236-731 66-476 (506)
2 3hsi_A Phosphatidylserine synt 100.0 5.8E-34 2E-38 323.4 15.2 350 203-729 24-401 (458)
3 1xdp_A Polyphosphate kinase; P 99.9 2.1E-22 7.3E-27 236.5 17.6 271 235-730 346-632 (687)
4 2fk9_A Protein kinase C, ETA t 99.9 8.1E-22 2.8E-26 191.1 12.0 144 17-174 8-156 (157)
5 2o8r_A Polyphosphate kinase; s 99.9 6.7E-21 2.3E-25 221.8 20.7 273 235-730 351-638 (705)
6 2ep6_A MCTP2 protein; beta san 99.8 2E-19 6.9E-24 170.2 14.7 127 30-175 5-132 (133)
7 1wfj_A Putative elicitor-respo 99.8 5.7E-20 1.9E-24 174.7 10.0 127 33-179 5-134 (136)
8 2dmh_A Myoferlin; beta-sandwic 99.8 4.8E-19 1.6E-23 169.1 14.1 124 36-178 5-136 (140)
9 3kwu_A MUNC13-1; calcium bindi 99.8 1.8E-18 6E-23 166.9 17.2 121 35-174 14-146 (148)
10 3b7y_A E3 ubiquitin-protein li 99.8 8.8E-19 3E-23 170.0 15.1 124 36-175 18-153 (153)
11 1gmi_A Protein kinase C, epsil 99.8 4.5E-19 1.6E-23 168.5 12.1 130 34-176 2-134 (136)
12 3m7f_B E3 ubiquitin-protein li 99.8 5.1E-18 1.8E-22 168.7 15.2 124 37-176 7-142 (176)
13 1rlw_A Phospholipase A2, CALB 99.8 2.1E-18 7.2E-23 161.4 10.7 118 37-175 2-125 (126)
14 2nq3_A Itchy homolog E3 ubiqui 99.7 5.8E-18 2E-22 167.5 12.6 147 14-178 10-164 (173)
15 3pyc_A E3 ubiquitin-protein li 99.7 2.6E-17 8.9E-22 155.4 13.9 120 38-173 5-131 (132)
16 2b3r_A Phosphatidylinositol-4- 99.7 1.6E-16 5.6E-21 150.4 12.2 105 35-155 17-130 (134)
17 1rsy_A Synaptotagmin I; calciu 99.7 1.8E-16 6.1E-21 153.5 10.8 105 36-155 40-150 (152)
18 3fdw_A Synaptotagmin-like prot 99.7 1.2E-16 4.2E-21 153.9 8.9 108 37-159 22-138 (148)
19 3f04_A Synaptotagmin-1; C2A, c 99.7 1.9E-16 6.6E-21 151.6 9.6 104 36-154 32-141 (143)
20 2d8k_A Synaptotagmin VII; exoc 99.7 4.2E-16 1.4E-20 148.8 11.7 106 36-156 24-136 (141)
21 2bwq_A Regulating synaptic mem 99.7 2.9E-16 1E-20 147.4 10.3 101 37-153 17-128 (129)
22 2z0u_A WW domain-containing pr 99.6 1.3E-16 4.5E-21 154.9 7.7 104 36-154 41-154 (155)
23 3fbk_A RGS3, RGP3, regulator o 99.6 2.7E-16 9.3E-21 152.5 9.7 107 35-157 24-139 (153)
24 4ggj_A Mitochondrial cardiolip 99.6 3.8E-16 1.3E-20 157.6 11.1 131 237-451 47-178 (196)
25 2q3x_A Regulating synaptic mem 99.6 2.7E-16 9.3E-21 155.4 9.8 107 35-156 27-140 (171)
26 3rdl_A Protein kinase C alpha 99.6 4E-16 1.4E-20 148.0 10.6 106 35-156 13-125 (137)
27 1a25_A CALB, protein kinase C 99.6 3.7E-16 1.3E-20 150.8 10.2 105 35-155 28-139 (149)
28 1rh8_A Piccolo protein; beta-s 99.6 1E-16 3.4E-21 153.3 6.0 107 35-156 15-139 (142)
29 1wfm_A Synaptotagmin XIII; C2 99.6 8.4E-16 2.9E-20 146.3 12.3 103 36-156 24-133 (138)
30 1v27_A Regulating synaptic mem 99.6 2.9E-16 9.9E-21 149.8 9.1 105 37-157 20-135 (141)
31 2r83_A Synaptotagmin-1; C2A-C2 99.6 1.7E-15 5.9E-20 162.2 15.2 128 36-178 17-150 (284)
32 2dmg_A KIAA1228 protein; beta- 99.6 1.1E-15 3.7E-20 146.2 10.5 106 37-158 23-138 (142)
33 1w15_A Synaptotagmin IV; metal 99.6 9.4E-16 3.2E-20 148.6 10.1 108 36-160 28-143 (153)
34 2chd_A Rabphilin-3A, exophilin 99.6 1.3E-15 4.4E-20 145.6 10.6 104 36-154 27-139 (142)
35 3n5a_A Synaptotagmin-7; calciu 99.6 6.1E-16 2.1E-20 146.9 7.6 108 36-160 14-129 (138)
36 1ugk_A Synaptotagmin IV, KIAA1 99.6 2.9E-15 1E-19 142.4 11.5 105 36-155 20-133 (138)
37 2cjt_A UNC-13 homolog A, MUNC1 99.6 3.4E-15 1.2E-19 140.7 11.3 115 37-173 4-130 (131)
38 2enp_A B/K protein; C2 type 1, 99.6 1.3E-15 4.6E-20 146.4 8.4 114 36-159 24-144 (147)
39 2cm5_A Rabphilin-3A; protein t 99.6 4.3E-15 1.5E-19 146.0 12.0 108 36-160 35-150 (166)
40 1tjx_A Similar to synaptotagmi 99.6 3.8E-15 1.3E-19 145.3 11.3 102 36-154 23-132 (159)
41 3l9b_A Otoferlin; C2-domain, b 99.6 6.8E-15 2.3E-19 137.0 11.6 116 39-177 22-142 (144)
42 1byr_A Protein (endonuclease); 99.5 1.9E-14 6.5E-19 139.5 12.1 134 236-451 14-149 (155)
43 2cjs_A UNC-13 homolog A, MUNC1 99.5 1.9E-14 6.4E-19 141.2 9.2 87 37-144 13-100 (167)
44 1dqv_A Synaptotagmin III; beta 99.5 5.5E-14 1.9E-18 151.4 12.8 123 37-176 19-150 (296)
45 1byr_A Protein (endonuclease); 99.5 6.4E-14 2.2E-18 135.8 11.3 119 531-730 14-133 (155)
46 4gel_A Mitochondrial cardiolip 99.5 1.4E-14 4.9E-19 149.0 6.5 153 232-451 54-210 (220)
47 3bxj_A RAS GTPase-activating p 99.5 3.6E-15 1.2E-19 171.1 1.4 124 34-177 7-159 (483)
48 1djx_A PLC-D1, phosphoinositid 99.5 1E-13 3.4E-18 163.2 13.4 120 36-174 495-623 (624)
49 3jzy_A Intersectin 2; C2 domai 99.5 1.4E-13 4.8E-18 159.8 14.0 116 36-173 385-506 (510)
50 4ggj_A Mitochondrial cardiolip 99.5 5.7E-14 2E-18 141.7 9.2 118 531-731 46-163 (196)
51 3nsj_A Perforin-1; pore formin 99.5 1.9E-13 6.5E-18 157.3 13.8 130 15-174 367-503 (540)
52 1cjy_A CPLA2, protein (cytosol 99.4 3.3E-13 1.1E-17 159.9 7.9 104 36-154 16-125 (749)
53 2r83_A Synaptotagmin-1; C2A-C2 99.4 2.1E-12 7.1E-17 138.1 12.3 101 37-154 149-257 (284)
54 1dqv_A Synaptotagmin III; beta 99.3 8.9E-13 3E-17 142.0 3.9 109 37-161 151-267 (296)
55 3qr0_A Phospholipase C-beta (P 99.2 2.5E-11 8.4E-16 145.4 12.6 113 37-175 649-771 (816)
56 1xdp_A Polyphosphate kinase; P 99.2 3E-11 1E-15 142.1 11.7 119 534-731 350-480 (687)
57 3ohm_B 1-phosphatidylinositol- 99.2 2.8E-11 9.6E-16 145.6 10.5 113 37-175 724-845 (885)
58 2zkm_X 1-phosphatidylinositol- 99.2 4.7E-11 1.6E-15 143.8 10.9 113 36-174 676-798 (799)
59 3pfq_A PKC-B, PKC-beta, protei 99.1 1.2E-10 4.1E-15 139.5 11.9 105 35-156 169-281 (674)
60 4gel_A Mitochondrial cardiolip 99.1 1.7E-10 5.7E-15 118.5 10.2 136 531-731 58-195 (220)
61 1yrk_A NPKC-delta, protein kin 99.0 6.6E-09 2.3E-13 93.8 13.4 89 74-174 27-124 (126)
62 2enj_A NPKC-theta, protein kin 98.9 5.4E-09 1.8E-13 95.6 11.8 111 38-174 10-129 (138)
63 3hsi_A Phosphatidylserine synt 98.9 6E-09 2E-13 118.1 10.8 125 531-714 37-165 (458)
64 1v0w_A Phospholipase D; hydrol 98.6 4.6E-08 1.6E-12 113.0 9.9 137 530-729 65-208 (506)
65 2o8r_A Polyphosphate kinase; s 98.3 1.6E-06 5.6E-11 101.3 11.1 120 533-731 354-487 (705)
66 3qph_A TRMB, A global transcri 96.3 0.0022 7.4E-08 69.7 3.9 52 530-601 118-169 (342)
67 3qph_A TRMB, A global transcri 94.5 0.04 1.4E-06 59.7 6.2 47 236-295 119-165 (342)
68 2f5t_X Archaeal transcriptiona 92.8 0.089 3.1E-06 53.5 4.9 50 236-298 10-59 (233)
69 2c1l_A Restriction endonucleas 85.3 1.5 5.1E-05 43.9 6.7 40 688-729 103-145 (358)
70 2yrb_A Protein fantom; beta sa 82.7 2.5 8.7E-05 39.7 6.9 97 76-174 44-149 (156)
71 2wxf_A Phosphatidylinositol-4, 82.3 4.4 0.00015 49.3 10.7 72 35-124 214-294 (940)
72 3l4c_A Dedicator of cytokinesi 77.0 3.9 0.00013 40.7 6.5 51 88-138 79-137 (220)
73 3hhm_A Phosphatidylinositol-4, 75.8 5.9 0.0002 48.6 8.9 87 36-139 353-453 (1091)
74 1e7u_A Phosphatidylinositol 3- 63.7 30 0.001 42.1 11.4 73 36-124 216-296 (961)
75 2f5t_X Archaeal transcriptiona 52.1 30 0.001 34.7 7.5 51 530-600 9-59 (233)
76 2y3a_A Phosphatidylinositol-4, 50.3 11 0.00038 46.5 4.5 72 35-124 350-430 (1092)
77 1q32_A TDP1P;, tyrosyl-DNA pho 23.9 20 0.0007 40.6 0.8 40 682-725 424-487 (544)
78 3sq7_A Tyrosyl-DNA phosphodies 22.5 34 0.0012 38.0 2.2 22 688-709 103-128 (470)
79 1jy1_A TDP1, tyrosyl-DNA phosp 21.3 39 0.0013 37.6 2.4 27 688-714 117-146 (464)
80 1jy1_A TDP1, tyrosyl-DNA phosp 21.2 55 0.0019 36.4 3.6 33 353-390 115-147 (464)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=2.6e-36 Score=350.21 Aligned_cols=381 Identities=15% Similarity=0.125 Sum_probs=201.4
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCC--CeEEEEEecCCcccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEG--VRVLLLVWDDPTSRSILGYKMDGVM 313 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~G--V~VriLvwd~~~s~~~~~~~~~~~~ 313 (839)
++|++|+++|++||++|+|++|.+ ++++. .+.+|.++|++||+|| |+||||+ |+.++.....
T Consensus 66 ~~~~~l~~~I~~Ak~~I~i~~y~~------~~~d~--~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~------- 129 (506)
T 1v0w_A 66 RLLAKMTENIGNATRTVDISTLAP------FPNGA--FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV------- 129 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEESS------CCCHH--HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-------
T ss_pred HHHHHHHHHHHHhccEEEEEEeec------cCCCh--HHHHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-------
Confidence 479999999999999999999973 12222 4678999999999999 9999997 6644321100
Q ss_pred ccCcHHHHhhhcCCCc------EEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCC
Q 003210 314 QTHDEETRRVFKHSSV------KVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 387 (839)
Q Consensus 314 ~~~~~~~~~~~~~~~v------~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r 387 (839)
......+.|+..|+ .+... . +.. . ...+.+||+|++|||++ +||+||+|+++++
T Consensus 130 --~~~~~~~~L~~~g~~~~~~~~~~~~-~-------~~~-~-~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 130 --IPSKYRDELTAKLGKAAENITLNVA-S-------MTT-S-KTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp --HHHHHHHHHHHHHGGGGGGEEEEEE-E-------ECS-B-TTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred --CCHHHHHHHHhcccceeecCccccc-c-------ccc-c-CCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 01123333443333 22210 0 000 0 00124899999999997 9999999998766
Q ss_pred CCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhhcCCC-CcccCCCCchhh
Q 003210 388 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPH-GIKKLKSGDDAL 466 (839)
Q Consensus 388 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~-~~~~l~~~~~~~ 466 (839)
|.+. ..+|||++++|+||+|.++...|.++|+...... .+..+. ....
T Consensus 190 y~~~-----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~~~-~~~~- 238 (506)
T 1v0w_A 190 YLDT-----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVW-FAAS- 238 (506)
T ss_dssp HTSS-----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTTEE-EEES-
T ss_pred cccC-----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccCChhhhc-cccc-
Confidence 6431 1479999999999999999999999999764210 000000 0000
Q ss_pred hhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcch-----hcccccccCCcc--------cchhHHH
Q 003210 467 LRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKE-----ATSKNLVCGKNV--------LIDMSIH 533 (839)
Q Consensus 467 ~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~-----~~~~~~~~g~~~--------~~e~sI~ 533 (839)
...+..+.... ...|.. ....+...+|+...+........|..+.. +....+..+... ..+.+|.
T Consensus 239 ~~~~~~~~~~~-~~~p~~-~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~~d~P~~~~~~~~~~~~~~~~ 316 (506)
T 1v0w_A 239 GNAGCMPTMHK-DTNPKA-SPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEE 316 (506)
T ss_dssp TTCCCCTTHHH-HHSCSS-CCCCSSEEEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSSTTCCCTTTSCHHHHHHCHHH
T ss_pred cccccCchhcc-ccCccc-CcccccccceecccccceeecCCccccccccCcccccceeeccccccccCcccccccccHH
Confidence 00000000000 000000 00112223332221111111111211000 000000000000 0135799
Q ss_pred HHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHH
Q 003210 534 TAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRI 613 (839)
Q Consensus 534 ~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i 613 (839)
++|+++|.+||++|||++|||.+-.... ..+...+..+|.+|. .+||+|+||+|..++...
T Consensus 317 ~~~~~~I~~A~~~I~I~tq~~~pyf~p~---------~~~~~~i~~aL~~Aa--~rGV~VrIl~~~~~~~~~-------- 377 (506)
T 1v0w_A 317 SALRALVASAKGHIEISQQDLNATCPPL---------PRYDIRLYDALAAKM--AAGVKVRIVVSDPANRGA-------- 377 (506)
T ss_dssp HHHHHHHHTCSSEEEEEESCSSCCTTTS---------CSCCHHHHHHHHHHH--HTTCEEEEEECCGGGCC---------
T ss_pred HHHHHHHhCcCcEEEEEeccccccccCc---------ccchHHHHHHHHHHH--hCCCcEEEEeCCCCchHH--------
Confidence 9999999999999999996655321000 001235777777764 589999999998653211
Q ss_pred HHHHHHH-HHHHHH---H--HHHHHHHcCcCCCCC--ccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCcee
Q 003210 614 LFWQHKT-MQMMYE---T--IYKALVEVGLEGAFS--PQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRF 685 (839)
Q Consensus 614 ~~~~~~t-~~~~~~---~--~~~~L~~~G~~~~~~--p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (839)
+.+.... +..+.. . .--.|.+.|+.. .. +..-+.++.++.... +... ...
T Consensus 378 ~~~a~~~~~~~L~~~~~~l~~gv~ll~~g~~e-~~~~~~~~l~i~~~~~~~~---~~~~------------------~~~ 435 (506)
T 1v0w_A 378 VGSGGYSQIKSLSEISDTLRNRLANITGGQQA-AKTAMCSNLQLATFRSSPN---GKWA------------------DGH 435 (506)
T ss_dssp -----CCCCSCTHHHHHHHHHHHHHHHTSHHH-HHHHHHHHEEEEECCSSSS---SSCT------------------TSC
T ss_pred HHHhHHHHHHHHHHhhhhhcccchhcccccch-hccccccceeeeeccccCc---cccc------------------cCc
Confidence 1111000 000000 0 001122223100 00 000011111110000 0000 001
Q ss_pred eEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 686 MIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 686 ~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
..++|+|+|||||++++|||+|||.||| +|+++.++++++.
T Consensus 436 ~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~a 476 (506)
T 1v0w_A 436 PYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAA 476 (506)
T ss_dssp CCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHH
T ss_pred cccceEEEEEECCcEEEEeCCCCCCcch-----hhceeEecCHHHH
Confidence 2589999999999999999999999999 3999999998753
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=5.8e-34 Score=323.42 Aligned_cols=350 Identities=16% Similarity=0.105 Sum_probs=211.1
Q ss_pred ccCceeEEeecCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHH
Q 003210 203 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 282 (839)
Q Consensus 203 ~~g~~v~l~~dg~~~~~~~~~~~~~~~~~y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~ 282 (839)
..||.|+++.+|+. +|++++++|++||++|+|++|.|. ++. .+..|.++|.
T Consensus 24 ~~~n~v~~l~~g~~--------------------~~~~l~~~I~~A~~~I~i~~~~~~-------~d~--~g~~l~~aL~ 74 (458)
T 3hsi_A 24 LQAEQIEFLGSSAE--------------------FKTQIIELIRNAKKRIYVTALYWQ-------KDE--AGQEILDEIY 74 (458)
T ss_dssp CCGGGEEECCCHHH--------------------HHHHHHHHHHTCSSEEEEEESCBC-------SSH--HHHHHHHHHH
T ss_pred ccCCeEEEEeCHHH--------------------HHHHHHHHHHhcCCEEEEEEEEEe-------cCc--HHHHHHHHHH
Confidence 36899999999864 899999999999999999999653 333 5678999999
Q ss_pred hhhcC--CCeEEEEEecCCc-cccccccccccccccC-cHHHHhhhcC--CCcEEE--ecc-CccCccccccccccccce
Q 003210 283 SKSQE--GVRVLLLVWDDPT-SRSILGYKMDGVMQTH-DEETRRVFKH--SSVKVL--LCP-RIAGKRHSWAKQKEVGTI 353 (839)
Q Consensus 283 ~kA~~--GV~VriLvwd~~~-s~~~~~~~~~~~~~~~-~~~~~~~~~~--~~v~v~--~~p-~~~~~~~~~~~~~~~~~~ 353 (839)
+||++ ||+||||+ |+.. +....| ..... .......|.. ++|+|. +++ +... ...+
T Consensus 75 ~aa~r~~GV~Vril~-D~~~~~r~~~g-----~~~~~~~~~~~~~L~~~g~nv~v~~~~f~~p~~~----------~~~~ 138 (458)
T 3hsi_A 75 RVKQENPHLDVKVLI-DWHRAQRNLLG-----AEKSATNADWYCEQRQTYQLPDDPNMFFGVPINT----------REVF 138 (458)
T ss_dssp HHHHHSTTCEEEEEE-ETTGGGSCCC----------CCHHHHHHHHHHHHTCTTCCCCEEEECSSS----------SGGG
T ss_pred HHHhcCCCCEEEEEE-ECccccccccc-----cccccccHHHHHHHHhhCCCceEeeeecCCcccc----------cccc
Confidence 99998 99999996 7632 111001 00000 1122233322 336666 553 2110 1235
Q ss_pred ecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeC
Q 003210 354 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG 433 (839)
Q Consensus 354 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~G 433 (839)
.++|+|++|||++ + ++||+||+++|+... .....|+|+ .+.|
T Consensus 139 ~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~---------------------------~~~~~drd~--~i~g 180 (458)
T 3hsi_A 139 GVLHVKGFVFDDT--------V-LYSGASINNVYLHQF---------------------------EKYRYDRYQ--KITH 180 (458)
T ss_dssp CCEECCEEEETTE--------E-EEESCCBSTTTTTCS---------------------------SCCEECCEE--EEEC
T ss_pred CcceeeEEEECCC--------E-EEEeeecCHHHhcCC---------------------------cccCcchhh--hhcC
Confidence 6899999999995 7 556699999765321 112458884 4899
Q ss_pred hHHHHHHHHHHH--HHhhhcCCCCcccC--CC---Cchhhhhc-ccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCccc
Q 003210 434 PAAYDVLTNFEE--RWRKASKPHGIKKL--KS---GDDALLRI-ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSV 505 (839)
Q Consensus 434 paa~dl~~~F~~--rW~~~~~~~~~~~l--~~---~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~ 505 (839)
|.+.|....|.+ .|+...-.. +... .. +....... +..+...... .+. ...+...+|+..-..
T Consensus 181 ~~~~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---~~~~~~~~~v~p~~~---- 251 (458)
T 3hsi_A 181 AELADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGNIRAYRKDLAQNGEYS-LKS---AVKLPNVLSVSPLFG---- 251 (458)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHHHHHHHHHHHHHCCCC-CSS---CBSSCSSCEEEEEEE----
T ss_pred chHHHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHHHHHHHHhhhhccccc-ccc---cCCCCceEEEecCCC----
Confidence 999999999944 465321100 0000 00 00000000 0000000000 000 000111234332110
Q ss_pred CCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHH
Q 003210 506 RGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKI 585 (839)
Q Consensus 506 ~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~ 585 (839)
| +. .+..|..+|+++|.+|+++|||+++||+++. .+..+|..|
T Consensus 252 ------~----------~~---~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-----------------~~~~aL~~A- 294 (458)
T 3hsi_A 252 ------L----------GA---SGNELNQVIEDLFLQVQKKLVICTPYFNFPR-----------------TLQHKIATL- 294 (458)
T ss_dssp ------E----------SS---SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH-----------------HHHHHHHHH-
T ss_pred ------C----------CC---chhHHHHHHHHHHHhcccEEEEEEeccCCCH-----------------HHHHHHHHH-
Confidence 0 00 1347899999999999999999999999864 466667666
Q ss_pred HcCCCcEEEEEecCCCCC-------CCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHcC---cCCCCCccCceeeeecCc
Q 003210 586 RAHERFAAYIVIPMWPEG-------VPT-GAATQRILFWQHKTMQMMYETIYKALVEVG---LEGAFSPQDYLNFFCLGN 654 (839)
Q Consensus 586 ~~~~g~~V~ivlP~~peg-------~~~-~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G---~~~~~~p~~y~~~~~l~~ 654 (839)
+.+||+|+||+|..... .+. .....+.++. .+......-++.|.++| ++++. |
T Consensus 295 -a~rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye---~~~~~f~~~~~~l~~~G~i~V~i~~----~-------- 358 (458)
T 3hsi_A 295 -LENGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYE---SNLRRFCEKFETQIESGQLVVRLWR----D-------- 358 (458)
T ss_dssp -HTTTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHH---HHHHHHHHHTHHHHHHTSEEEEEEC----B--------
T ss_pred -HHCCCeEEEEECCccccCCccCCcchhhhhcchHHHHH---HhhhhhHHHHHHHHhCCCeEEEEEe----c--------
Confidence 56999999999986311 111 0111111110 00000011135677788 44421 0
Q ss_pred cccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecch
Q 003210 655 REVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 729 (839)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 729 (839)
. ..++|+|+|||||++++|||+|||.||+. +|+|+++.+++++
T Consensus 359 -------~-----------------------~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 359 -------G-----------------------DNTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQ 401 (458)
T ss_dssp -------T-----------------------TBEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECTT
T ss_pred -------C-----------------------CCceeEEEEEECCeEEEecCCCCCcchhh--hCceeEEEEeCCc
Confidence 0 13899999999999999999999999998 8999999999986
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.88 E-value=2.1e-22 Score=236.49 Aligned_cols=271 Identities=15% Similarity=0.152 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHHhccc-----ccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccc
Q 003210 235 GKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKM 309 (839)
Q Consensus 235 ~~~f~~l~~aI~~A~~-----~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~ 309 (839)
.+.|+.+++.|++|++ +|+|+.|.+.+ +..+.++|++||++||+|+||+ |..+....
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~------------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~----- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK------------DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE----- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT------------TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-----
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecC------------cHHHHHHHHHHHhcCCEEEEEE-CCCcccch-----
Confidence 3578999999999997 89998775421 2679999999999999999997 76542110
Q ss_pred ccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEE---EEEccccCCCC
Q 003210 310 DGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKII---AFVGGLDLCDG 386 (839)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~v---afvGG~dl~~~ 386 (839)
.......+.|..+||+|..+.+. ++.|+|++|||++..+ .+ +|+||.|+...
T Consensus 408 -----~~n~~~~~~L~~aGV~V~~~~~~----------------~k~H~Ki~VID~re~~----~i~~~a~iGS~N~d~r 462 (687)
T 1xdp_A 408 -----EANIHWAKRLTEAGVHVIFSAPG----------------LKIHAKLFLISRKENG----EVVRYAHIGTGNFNEK 462 (687)
T ss_dssp -----TTTTTTTHHHHHHTCEEEECCTT----------------CEECCEEEEEEEEETT----EEEEEEEEESSCSCTT
T ss_pred -----hhHHHHHHHHHHCCCEEEEecCC----------------ccccceEEEEEeccCC----eEEEEEEEeCCcCCcc
Confidence 00113345567789998775321 4689999999952111 25 99999998774
Q ss_pred CCCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHhhhcCCCCcccCCCCchh
Q 003210 387 RYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKASKPHGIKKLKSGDDA 465 (839)
Q Consensus 387 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~ 465 (839)
. ...|+|+++.++|| +|.++...|...|....... +
T Consensus 463 s---------------------------------~~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~-------~--- 499 (687)
T 1xdp_A 463 T---------------------------------ARLYTDYSLLTADARITNEVRRVFNFIENPYRPVT-------F--- 499 (687)
T ss_dssp G---------------------------------GGTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC-------C---
T ss_pred h---------------------------------hhhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc-------h---
Confidence 1 13589999999987 69999999999998643210 0
Q ss_pred hhhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccc
Q 003210 466 LLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH 545 (839)
Q Consensus 466 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~ 545 (839)
. +++.+ |.. ....+...+...|..|++
T Consensus 500 ------------------------~----~l~~s---------P~~----------------~~~~l~~~I~~ei~~A~~ 526 (687)
T 1xdp_A 500 ------------------------D----YLMVS---------PQN----------------SRRLLYEMVDREIANAQQ 526 (687)
T ss_dssp ------------------------S----SCEEE---------TTS----------------HHHHHHHHHHHHHHHHHT
T ss_pred ------------------------h----heeeC---------Cch----------------hhHHHHHHHHHHHHHHHc
Confidence 0 00001 000 112345556666777886
Q ss_pred ----eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHH
Q 003210 546 ----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTM 621 (839)
Q Consensus 546 ----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~ 621 (839)
+|+|.++|+ ++. .+..+|.+| +.+||+|.|++++.-.-.
T Consensus 527 g~~~~I~i~~~~l-pD~-----------------~ii~AL~~A--a~rGV~VrLivrg~c~l~----------------- 569 (687)
T 1xdp_A 527 GLPSGITLKLNNL-VDK-----------------GLVDRLYAA--SSSGVPVNLLVRGMCSLI----------------- 569 (687)
T ss_dssp TCCCCEEEEESCB-CCH-----------------HHHHHHHHH--HHTTCCEEEEESSCBCBC-----------------
T ss_pred CCCCEEEEEeCCC-CCH-----------------HHHHHHHHH--HHCCCEEEEEEecccccC-----------------
Confidence 899999884 442 455666666 459999999996531000
Q ss_pred HHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEE---ee
Q 003210 622 QMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV---DD 698 (839)
Q Consensus 622 ~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---DD 698 (839)
.|+... .+-+.+... + .+ ..=|+|+++. ||
T Consensus 570 -------------pgvp~~---sdni~V~s~--------~---------------------~r--~Leh~rI~~f~~~dd 602 (687)
T 1xdp_A 570 -------------PNLEGI---SDNIRAISI--------V---------------------DR--YLEHDRVYIFENGGD 602 (687)
T ss_dssp -------------TTCTTT---STTEEEEEE--------C---------------------SS--SEECCCEEEECGGGS
T ss_pred -------------CCCCCC---CCCEEEEEe--------h---------------------hH--HhhCCeEEEEcCCCC
Confidence 011100 011111100 0 00 1238888888 78
Q ss_pred eEEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 699 EYVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 699 ~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
.+++||||||+.|||. ++.|+++.|+|+++
T Consensus 603 ~~~~IGSAN~d~Rsl~--~n~Ev~~~I~d~~~ 632 (687)
T 1xdp_A 603 KKVYLSSADWMTRNID--YRIEVATPLLDPRL 632 (687)
T ss_dssp CEEEEESCCBSHHHHH--SEEEEEEECCSHHH
T ss_pred CEEEEEcCccchhhhh--hheeeeEEecCHHH
Confidence 9999999999999998 89999999999975
No 4
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.86 E-value=8.1e-22 Score=191.14 Aligned_cols=144 Identities=18% Similarity=0.295 Sum_probs=109.3
Q ss_pred CCCCceecCCCCCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCC
Q 003210 17 NGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS 96 (839)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~ 96 (839)
|--..-++|.+..+..+++++|+|+|+|++|++|+++|..++.. +|. +....+||||+|.+++++++||++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~---~~~g~sDPYv~v~l~~~~~~kT~v~~kt 82 (157)
T 2fk9_A 8 HHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFK---KGHQLLDPYLTVSVDQVRVGQTSTKQKT 82 (157)
T ss_dssp --CCSCCCC-------CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSS---SSCCCCCEEEEEEETTEEEEECCCCSSC
T ss_pred ccccCccccCCCCcchhccCccEEEEEEEEEECCCCcccccccc--ccc---cCCCCCCeEEEEEECCEeeEEeeecCCC
Confidence 33455688888777788899999999999999999887432100 000 0011289999999999988899999999
Q ss_pred CCCeeeeEEEEEccCCCceEEEEEEeecCCC-CcceeEEEEeceeeecC----ccccceeeecCCCCCCCCCCceEEEEE
Q 003210 97 EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSG----GKVEGTYPVLNGSGKPCKPGATLTLSI 171 (839)
Q Consensus 97 ~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~-d~~IG~~~i~l~~l~~g----~~~~~w~~L~~~~gk~~~~~g~L~l~l 171 (839)
+||+|||+|.|.+.. ...|.|+|||+|..+ |++||++.||+.++..+ ...+.||+|. + .|+|+|++
T Consensus 83 lnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-~-------~G~i~l~l 153 (157)
T 2fk9_A 83 NKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-P-------EGKVFVVI 153 (157)
T ss_dssp SSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-S-------SCEEEEEE
T ss_pred CCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-C-------CcEEEEEE
Confidence 999999999999864 468999999999855 88999999999999865 5689999995 2 35999999
Q ss_pred Eee
Q 003210 172 QYT 174 (839)
Q Consensus 172 ~f~ 174 (839)
+|.
T Consensus 154 ~~~ 156 (157)
T 2fk9_A 154 TLT 156 (157)
T ss_dssp EEC
T ss_pred EEE
Confidence 873
No 5
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.86 E-value=6.7e-21 Score=221.83 Aligned_cols=273 Identities=14% Similarity=0.166 Sum_probs=180.8
Q ss_pred hhhHHHHHHHHHhccc-----ccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccc
Q 003210 235 GKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKM 309 (839)
Q Consensus 235 ~~~f~~l~~aI~~A~~-----~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~ 309 (839)
.+.|+.++++|++|++ +|.++.|.+. .+..+.++|.+||++||+|+||+ | .++....
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~------------~ds~Iv~ALi~AA~rGv~V~vLv-e-l~arfde---- 412 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVA------------ENSSIISALEAAAQSGKKVSVFV-E-LKARFDE---- 412 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCC------------SCCHHHHHHHHHHHTTCEEEEEE-C-CCSCC------
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEc------------CCHHHHHHHHHHHHCCCEEEEEE-e-CCCCcch----
Confidence 3579999999999999 9999988652 13689999999999999999997 7 4443210
Q ss_pred ccccccCcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecC--CCCCCccEEEEEccccCCCCC
Q 003210 310 DGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDAD--AGYNRRKIIAFVGGLDLCDGR 387 (839)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~vafvGG~dl~~~r 387 (839)
..+..+.+.|+.+||+|...- ..+++|+|++|||++ .+++- +..+++|.-|+.+.
T Consensus 413 -----e~ni~wa~~Le~aGv~Vv~g~----------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~n~~- 469 (705)
T 2o8r_A 413 -----ENNLRLSERMRRSGIRIVYSM----------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNFNET- 469 (705)
T ss_dssp -------CHHHHHHHHHHTCEEEECC----------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCSSCC-
T ss_pred -----hhhHHHHHHHHHCCCEEEEcc----------------CCCCceeEEEEEecccccCCce-eEEEeccccceeee-
Confidence 112356677888999987631 125799999999985 33221 11334333232221
Q ss_pred CCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHhhhcCCCCcccCCCCchhh
Q 003210 388 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKASKPHGIKKLKSGDDAL 466 (839)
Q Consensus 388 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~ 466 (839)
...-|.|+++...+| ++.|+...|...|....
T Consensus 470 --------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~--------------- 502 (705)
T 2o8r_A 470 --------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPE--------------- 502 (705)
T ss_dssp --------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCC---------------
T ss_pred --------------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCCC---------------
Confidence 113477888888776 67999999966654210
Q ss_pred hhcccCCCCcCCCCCCCCCCCCCCcceeeEeeeccCcccCCCCCCcchhcccccccCCcccchhHHHHHHHHHHHhccc-
Q 003210 467 LRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH- 545 (839)
Q Consensus 467 ~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~~I~~A~~- 545 (839)
+ ... .|++-+ |.. ....|.+.+..+|.+|++
T Consensus 503 ------~----------------~~~-~~l~~s---------P~~----------------~~~~i~~~i~~eI~~Ak~G 534 (705)
T 2o8r_A 503 ------P----------------ARF-SRLLVA---------RYN----------------MGEAITNLIEREIENVKRG 534 (705)
T ss_dssp ------C----------------SCC-SSCEET---------TTT----------------HHHHHHHHHHHHHHHHHTT
T ss_pred ------C----------------CCc-eEEEEC---------Cch----------------HHHHHHHHHHHHHHHHhcC
Confidence 0 001 232221 111 134789999999999999
Q ss_pred ---eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhhHHHHHHHHHHHH
Q 003210 546 ---FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQ 622 (839)
Q Consensus 546 ---~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~~~i~~~~~~t~~ 622 (839)
+|+|.++| +++. .+..+|.+| +.+||+|.|++.+...-.|
T Consensus 535 ~~a~I~ik~n~-l~D~-----------------~ii~aL~~A--s~~GV~V~LIVRGiC~L~P----------------- 577 (705)
T 2o8r_A 535 KRGYMLLKMNG-LQDK-----------------NVITQLYRA--SEAGVEIDLIVRGICCLVP----------------- 577 (705)
T ss_dssp CCCEEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCEEEEEESSCBCSCC-----------------
T ss_pred CCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEEccccccCC-----------------
Confidence 99999999 5542 466666666 4589999999933210000
Q ss_pred HHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEeeeEEEE---eee
Q 003210 623 MMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV---DDE 699 (839)
Q Consensus 623 ~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---DD~ 699 (839)
|++ . .+-+.+... + + ...=|+|+++. ||+
T Consensus 578 -------------gv~-~---sdni~V~Si--------v---------------------g--r~Leh~RIy~f~~gd~~ 609 (705)
T 2o8r_A 578 -------------DMP-Q---SRNIRVTRL--------V---------------------D--MYLEHSRIWCFHNGGKE 609 (705)
T ss_dssp -------------SSG-G---GTTEEEEEC--------C---------------------S--SSEECCCEEEECGGGSC
T ss_pred -------------CCC-C---CCCeEEEee--------H---------------------H--HHHhcCEEEEEECCCCc
Confidence 000 0 000111000 0 0 01338899999 899
Q ss_pred EEEEeccccCCCCCCCCCCcceEEeeecchh
Q 003210 700 YVILGSANINQRSMEGTRDTEIAMGAYQPEY 730 (839)
Q Consensus 700 ~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 730 (839)
++.||||||+.|||. ++.|+++.++|+++
T Consensus 610 ~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~ 638 (705)
T 2o8r_A 610 EVFISSADWMKRNLY--NRIETACPVLDPTL 638 (705)
T ss_dssp EEEEESCCBCHHHHH--TSBCEEEECCSHHH
T ss_pred EEEEeccccchhhhh--heeEEEEEEcCHHH
Confidence 999999999999998 99999999999985
No 6
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.81 E-value=2e-19 Score=170.23 Aligned_cols=127 Identities=22% Similarity=0.313 Sum_probs=109.7
Q ss_pred CceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEc
Q 003210 30 SLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPV 109 (839)
Q Consensus 30 ~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v 109 (839)
+.......|.|+|+|++|++|+.++..+. +||||++.+++++. +|++++++.||+|||+|.|.+
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~ 68 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGK---------------SDPFCLLELGNDRL-QTHTVYKNLNPEWNKVFTFPI 68 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSC---------------CCEEEEEEETTEEE-ECCCCSSCSSCCCCEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCC---------------cCeEEEEEECCEEE-EeeeecCCCCCccccEEEEEe
Confidence 33444567999999999999999998777 89999999999877 999999999999999999999
Q ss_pred cCCCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 110 AHSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 110 ~~~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
.+....|.|+|||+|.. .+++||++.|++.++..+. +.|++|.+..++. ...|+|+|+++|..
T Consensus 69 ~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 69 KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp SCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred cCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 88778999999999986 5899999999999998654 5899998665443 34679999999863
No 7
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.80 E-value=5.7e-20 Score=174.66 Aligned_cols=127 Identities=23% Similarity=0.425 Sum_probs=110.1
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeee-CCCCCeeeeEEEEEccC
Q 003210 33 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 33 ~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~-~~~nP~WnE~F~~~v~~ 111 (839)
+....|.|+|+|++|++|+.++..+. +||||+|.+++++. +|++++ ++.||+|||+|.|.+.+
T Consensus 5 ~~~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f~f~v~~ 68 (136)
T 1wfj_A 5 SSGPHGTLEVVLVSAKGLEDADFLNN---------------MDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSE 68 (136)
T ss_dssp CCCCEEEEEEEEEEEEECSSCCSSCS---------------SCCCEEEESSSCEE-ECCCCTTCCSSCEEEEEEEEEEES
T ss_pred CCCCcEEEEEEEEeccCCCCcccCCC---------------cCceEEEEECCccc-eeEeccCCCCCCccCcEEEEEECC
Confidence 34577999999999999999988777 89999999999877 999998 89999999999999988
Q ss_pred CCceEEEEEEeecCC-CCcceeEEEEeceeee-cCccccceeeecCCCCCCCCCCceEEEEEEeeccccc
Q 003210 112 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIY-SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 179 (839)
Q Consensus 112 ~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~~ 179 (839)
....|.|+|||+|.. .+++||++.|+|.++. .+...+.||+|. +.++ ..|+|+|+++|.|...+
T Consensus 69 ~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~---~~G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEE---YKGEIWVALSFKPSGPS 134 (136)
T ss_dssp SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTE---EEEEEEEEEEEEECCSC
T ss_pred CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCCc---cCEEEEEEEEEEeCCCC
Confidence 778999999999985 5899999999999994 455578899997 4433 34699999999997654
No 8
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=169.11 Aligned_cols=124 Identities=27% Similarity=0.461 Sum_probs=107.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC---
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--- 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~--- 112 (839)
..|.|+|+|++|++|+.++. +. +||||+|.+++++. ||++++++.||+|||+|.|.+...
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~---------------~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~ 67 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK---------------PDPIVSVIFKDEKK-KTKKVDNELNPVWNEILEFDLRGIPLD 67 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC---------------CCEEEEEECSSCEE-ECCCCCSCSSCEEEEEEEEECSSCCCC
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC---------------CCeEEEEEECCEeE-EeeeecCCCCCccCcEEEEEecccccC
Confidence 45889999999999999987 66 89999999998876 999999999999999999998643
Q ss_pred -CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceee---ecCCCCCCCCCCceEEEEEEeecccc
Q 003210 113 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYP---VLNGSGKPCKPGATLTLSIQYTPMER 178 (839)
Q Consensus 113 -~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~---L~~~~gk~~~~~g~L~l~l~f~p~~~ 178 (839)
...|.|+|||+|.. .+++||++.|++.++..+...+.|++ |.+..++. ..|+|+|+++|.|...
T Consensus 68 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~--~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD--TGATIDLVIGYDPPSG 136 (140)
T ss_dssp TTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCE--EEEEEEEEEEECCCBS
T ss_pred CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCC--CCCEEEEEEEEECCCC
Confidence 57899999999985 57899999999999988877889988 76655543 3479999999998543
No 9
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.79 E-value=1.8e-18 Score=166.85 Aligned_cols=121 Identities=25% Similarity=0.381 Sum_probs=105.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCCc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAA 114 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~ 114 (839)
+..|.|+|+|++|++|+.++..+. +||||++.+++++. +|++++++.||+|||+|.|.+.....
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~Wne~f~f~v~~~~~ 77 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGS---------------SDPYVTVQVGKTKK-RTKTIYGNLNPVWEENFHFECHNSSD 77 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEETTEEE-ECCCCCSCSSCEEEEEEEEEECSTTC
T ss_pred ccccEEEEEEEeeeCCCCCCCCCC---------------cCeEEEEEECCEEE-ECCccCCCCCCCcccEEEEEecCCCC
Confidence 457999999999999999998877 89999999999877 99999999999999999999988778
Q ss_pred eEEEEEEeecCC------------CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 115 EVHFFVKDSDVV------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 115 ~L~~~V~d~d~~------------~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
.|.|+|||+|.. ++++||++.|++.++. ...+.||+|....++. ...|+|+|+++|.
T Consensus 78 ~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp EEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred EEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 999999999974 6899999999999983 4568999997444333 3457999999984
No 10
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.79 E-value=8.8e-19 Score=169.98 Aligned_cols=124 Identities=20% Similarity=0.330 Sum_probs=99.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
..|.|+|+|++|++|+.++..+. +||||+|.+.. ....||++++++.||+|||+|.|.+.
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 82 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA---------------SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH 82 (153)
T ss_dssp TCEEEEEEEEEEESCC----------------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC
T ss_pred CccEEEEEEEEeeCCCCCCCCCC---------------CCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec
Confidence 45789999999999999988777 89999999973 34559999999999999999999998
Q ss_pred CCCceEEEEEEeecCC-CCcceeEEEEeceeeecCccc------cceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 111 HSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKV------EGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 111 ~~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~------~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
.....|.|+|||+|.. .+++||++.|+|.++..+... +.||+|....++. +..|+|+|+++|.|
T Consensus 83 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 83 PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp TTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred CCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 7778999999999985 588999999999999876542 5899997544333 35679999999987
No 11
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.79 E-value=4.5e-19 Score=168.53 Aligned_cols=130 Identities=17% Similarity=0.313 Sum_probs=103.6
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~ 113 (839)
.+.+|+|+|+|++|++|+++|.+++.. +. .......+||||+|.+++.++++|++++++.||+|||+|.|.+...
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g-~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~- 76 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VG-PRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG- 76 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CC-SSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cc-cccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-
Confidence 367899999999999999887543200 00 0001112799999999998888999999999999999999998755
Q ss_pred ceEEEEEEeecCC-CCcceeEEEEeceeeecCc--cccceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 114 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG--KVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 114 ~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~--~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
..|.|+|||+|.. .|++||++.|++.++..+. ..+.|++|. + .|+|+|+++|.+.
T Consensus 77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~-~-------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-P-------EGKVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-S-------SCEEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC-C-------CeEEEEEEEEEec
Confidence 7999999999974 5889999999999998643 358899984 2 3599999999764
No 12
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.76 E-value=5.1e-18 Score=168.66 Aligned_cols=124 Identities=21% Similarity=0.352 Sum_probs=98.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.|+|+|+|++|++|+.++..+. +||||+|.+.+ ....+|++++++.||+|||+|.|.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~ 71 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA---------------SDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC---------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT
T ss_pred cEEEEEEEEEeeCCCCcCCCCC---------------cCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC
Confidence 4889999999999999998877 89999999974 134599999999999999999999987
Q ss_pred CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccc-c-----ceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 112 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKV-E-----GTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 112 ~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~-~-----~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
....|.|+|||++.. .+++||++.|+|.++..+... + .||+|....++. +..|+|+|+++|.|.
T Consensus 72 ~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 72 QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 778999999999985 589999999999999876443 2 799997544432 245799999999997
No 13
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.75 E-value=2.1e-18 Score=161.42 Aligned_cols=118 Identities=21% Similarity=0.350 Sum_probs=99.2
Q ss_pred ceEEEEEEEEeeCCCCC---CCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNM---DMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~---d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.|.|+|+|++|++|+.+ +..+. +||||++.+++ ...+||++++++.||+|||+|.|.+..
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 66 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT---------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC---------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC---------------CCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecC
Confidence 48899999999999985 44555 89999999986 234499999999999999999999853
Q ss_pred -CCceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 112 -SAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 112 -~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
....|.|+|||+|..++++||++.|+|.++..+...+.|++|.. . +.+.|+|+++..|
T Consensus 67 ~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~-----~~g~i~~~le~~~ 125 (126)
T 1rlw_A 67 NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ-V-----TEMVLEMSLEVAS 125 (126)
T ss_dssp TSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT-T-----EEEEEEEEEECCC
T ss_pred CCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC-C-----ceEEEEEEEEeCC
Confidence 45789999999998889999999999999998888899999963 1 2357777776544
No 14
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.74 E-value=5.8e-18 Score=167.51 Aligned_cols=147 Identities=24% Similarity=0.313 Sum_probs=103.2
Q ss_pred CCCCCCCceecCCC--CCCceeeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEee
Q 003210 14 DSFNGQNMQIVPST--KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTF 91 (839)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~ 91 (839)
|-++...+.|...+ .++.......+.|+|+|++|++|++.+..++ +||||+|.+++++. ||+
T Consensus 10 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~~~~~~~---------------sDPYv~v~~~~~~~-kT~ 73 (173)
T 2nq3_A 10 GRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFG---------------PSPYVEVTVDGQSK-KTE 73 (173)
T ss_dssp ---------------------CCSCCEEEEEEEEEEEECCCC--CCC---------------CCEEEEEEETTEEE-ECC
T ss_pred ccccccccccCcCCCCCccccccCCceEEEEEEEEeECCCCcccCCC---------------CCeEEEEEECCEEe-Ecc
Confidence 33444444444332 2233334578899999999999995544444 79999999999555 999
Q ss_pred eeeCCCCCeeeeEEEEEccCCCceEEEEEEeecCC-CCcceeEEEEeceeeecCcc-----ccceeeecCCCCCCCCCCc
Q 003210 92 VISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK-----VEGTYPVLNGSGKPCKPGA 165 (839)
Q Consensus 92 vi~~~~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~-----~~~w~~L~~~~gk~~~~~g 165 (839)
++++++||+|||+|.|.+. ....|.|+|||+|.. .+++||++.|+|.++..+.. .+.|++|....+ .....|
T Consensus 74 v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G 151 (173)
T 2nq3_A 74 KCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIG 151 (173)
T ss_dssp CCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEE
T ss_pred ccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccE
Confidence 9999999999999999985 478999999999985 58899999999999875322 256999976533 223467
Q ss_pred eEEEEEEeecccc
Q 003210 166 TLTLSIQYTPMER 178 (839)
Q Consensus 166 ~L~l~l~f~p~~~ 178 (839)
+|++.+.|.+...
T Consensus 152 ~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 152 DLSICLDGLQLES 164 (173)
T ss_dssp EEEEEEESEECC-
T ss_pred EEEEEEeeeecch
Confidence 9999999998744
No 15
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.73 E-value=2.6e-17 Score=155.41 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=98.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEEEeeeeeCCCCCeeeeEEEEEccCCCceE
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 116 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-~~~~rT~vi~~~~nP~WnE~F~~~v~~~~~~L 116 (839)
..|+|+|++|++|+++|..+. +||||+|.+++ ...++|+++++++||+|||+|.|.+.... .|
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~---------------sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l 68 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL---------------PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SI 68 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC---------------CCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CE
T ss_pred EEEEEEEEEeECCCCCCCCCC---------------cCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EE
Confidence 459999999999999998887 89999999975 34459999999999999999999987654 59
Q ss_pred EEEEEeecCCC----CcceeEEEEeceeee-cCccccceeeecCCC-CCCCCCCceEEEEEEe
Q 003210 117 HFFVKDSDVVG----SELIGTVAIPVEQIY-SGGKVEGTYPVLNGS-GKPCKPGATLTLSIQY 173 (839)
Q Consensus 117 ~~~V~d~d~~~----d~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~-gk~~~~~g~L~l~l~f 173 (839)
.|+|||+|..+ |++||++.|++.++. .+.....|++|.... .++....|+|+|++++
T Consensus 69 ~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 69 TISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 99999999864 789999999999883 333456899997542 2233456799999875
No 16
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=150.42 Aligned_cols=105 Identities=14% Similarity=0.268 Sum_probs=89.6
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEE-c
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVP-V 109 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~-v 109 (839)
...|.|.|+|++|++|+. +..+. +||||+|.+. .....||++++++.||+|||+|.|. +
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v 80 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGAD---------------PNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCC---------------CCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESC
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCC---------------CCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCc
Confidence 467889999999999996 66665 8999999992 2234499999999999999999999 6
Q ss_pred cC---CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecC
Q 003210 110 AH---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 155 (839)
Q Consensus 110 ~~---~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~ 155 (839)
.. ....|.|+|||+|.. .+++||++.|+|.++..+...+.||+|.+
T Consensus 81 ~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp CHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred CHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 53 247899999999985 48899999999999998888899999963
No 17
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.66 E-value=1.8e-16 Score=153.54 Aligned_cols=105 Identities=26% Similarity=0.320 Sum_probs=91.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
..+.|+|+|++|++|+.++..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 104 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 104 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH
T ss_pred CCCEEEEEEEEeECCCCccCCCC---------------cCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHH
Confidence 45889999999999999988777 8999999993 23344999999999999999999988642
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecC
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 155 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~ 155 (839)
...|.|+|||+|.. .+++||++.|++.++..+...+.||+|.+
T Consensus 105 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 105 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 47899999999985 58899999999999988888899999974
No 18
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=153.91 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 37 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
.|.|.|+|++|++|+.++ ..+. +||||++.+.. ....+|++++++.||+|||+|.|.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 86 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR---------------SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB---------------CCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCS
T ss_pred CCEEEEEEEEecCCCCcccCCCC---------------CCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeCh
Confidence 578999999999999887 4566 89999999962 124499999999999999999999875
Q ss_pred C---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCC
Q 003210 112 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 159 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk 159 (839)
. ...|.|+|||+|.. .+++||++.|+|.++..+...+.||+|..+.+.
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence 4 35799999999985 588999999999999877778899999855443
No 19
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.65 E-value=1.9e-16 Score=151.57 Aligned_cols=104 Identities=26% Similarity=0.320 Sum_probs=90.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
..+.|+|+|++|++|+.++..+. +||||+|.+. +....+|++++++.||+|||+|.|.+...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 96 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC---------------CCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred CCCEEEEEEEEecCCCCCCCCCC---------------cCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhh
Confidence 56789999999999999887776 8999999992 23345999999999999999999997643
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||+|.. .+++||++.|+|.++..+...+.|++|.
T Consensus 97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 37899999999985 5899999999999999888889999996
No 20
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=148.84 Aligned_cols=106 Identities=23% Similarity=0.244 Sum_probs=91.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEEeeeeeCCCCCeeeeEEEEEccC--
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAH-- 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~~nP~WnE~F~~~v~~-- 111 (839)
..+.|+|+|++|++|+.++..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 88 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYE 88 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC---------------CCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHH
T ss_pred CCCEEEEEEEEeECCCCCCCCCC---------------CCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHH
Confidence 46789999999999999988777 8999999994 2234599999999999999999998532
Q ss_pred --CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCC
Q 003210 112 --SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 112 --~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
....|.|+|||+|.. .+++||++.|++.++..+...+.|++|...
T Consensus 89 ~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 89 KVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp HHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred HcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 247899999999985 589999999999999988778999999743
No 21
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.65 E-value=2.9e-16 Score=147.41 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=83.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEEccC-
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH- 111 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~v~~- 111 (839)
.|.|.|+|++|++|+.++..+. +||||++.+. +....+|++++++.||+|||+|.|.+.+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 81 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP---------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC---------------BCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCH
Confidence 4789999999999999988777 8999999992 2334499999999999999999999533
Q ss_pred ---CCceEEEEEEeecCCC---CcceeEEEEeceeeecCccccceeee
Q 003210 112 ---SAAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPV 153 (839)
Q Consensus 112 ---~~~~L~~~V~d~d~~~---d~~IG~~~i~l~~l~~g~~~~~w~~L 153 (839)
....|.|+|||+|..+ +++||++.|++.++.... .+.||+|
T Consensus 82 ~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 82 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred HHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 2368999999999855 899999999999988644 7899998
No 22
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=154.89 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=89.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---E--EEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---A--VVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~---~--~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
..+.|+|+|++|++|+.++..+. +||||++.+.. . ...||+++++++||+|||+|.|.+.
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~---------------sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~ 105 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD---------------QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMS 105 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC---------------SEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECC
T ss_pred CCCEEEEEEEEccCcCCcccCCC---------------CCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcC
Confidence 45789999999999999998777 89999999954 2 2459999999999999999999986
Q ss_pred CC---CceEEEEEEeecCC-CCcceeEEEEeceeeec-Cccccceeeec
Q 003210 111 HS---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYS-GGKVEGTYPVL 154 (839)
Q Consensus 111 ~~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~-g~~~~~w~~L~ 154 (839)
.. ...|.|+|||+|.. ++++||++.|+|.++.. +...+.||+|+
T Consensus 106 ~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred HHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 53 36899999999984 58899999999999963 56678999995
No 23
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.65 E-value=2.7e-16 Score=152.46 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=89.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEc-
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV- 109 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v- 109 (839)
...|.|.|+|++|++|+.++ .+. +||||+|.+.. ....+|++++++.||+|||+|.|.+
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d-~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 87 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ-PGT---------------CDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS-SSC---------------CCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECC
T ss_pred CCCCEEEEEEEEeeCCCCCC-CCC---------------CCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecc
Confidence 56788999999999999988 565 89999999932 2234999999999999999999998
Q ss_pred -cCCCceEEEEEEeecCC-C-CcceeEEEEeceeeec-CccccceeeecCCC
Q 003210 110 -AHSAAEVHFFVKDSDVV-G-SELIGTVAIPVEQIYS-GGKVEGTYPVLNGS 157 (839)
Q Consensus 110 -~~~~~~L~~~V~d~d~~-~-d~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~ 157 (839)
......|.|+|||+|.. + +++||++.|+|.++.. +...+.||+|.+..
T Consensus 88 ~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 88 EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp GGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred cHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 44446799999999984 4 8999999999999984 67788999998643
No 24
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.64 E-value=3.8e-16 Score=157.61 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCccccccccccccccccC
Q 003210 237 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 316 (839)
Q Consensus 237 ~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~ 316 (839)
.|..|+++|++||++|+|+.|.|+ ...|.++|.+|++|||+||||+ |......
T Consensus 47 ~~~~ll~~I~~A~~sI~i~~y~~~-------------~~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------------- 99 (196)
T 4ggj_A 47 SLSRLLRALLAARSSLELCLFAFS-------------SPQLGRAVQLLHQRGVRVRVIT-DCDYMAL------------- 99 (196)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCBC-------------CHHHHHHHHHHHHTTCEEEEEE-SSCCC---------------
T ss_pred HHHHHHHHHHHhheEEEEEEEEeC-------------CHHHHHHHHHHHHcCCcEEEEE-ecccccc-------------
Confidence 799999999999999999998762 2569999999999999999997 7532110
Q ss_pred cHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCCc
Q 003210 317 DEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLF 396 (839)
Q Consensus 317 ~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~~ 396 (839)
.......|...||++...... ...|+|++|||++ ++|+||.|++...+.
T Consensus 100 ~~~~~~~l~~~gi~v~~~~~~----------------~~~H~K~~viD~~--------~~~~GS~N~t~~~~~------- 148 (196)
T 4ggj_A 100 NGSQIGLLRKAGIQVRHDQDL----------------GYMHHKFAIVDKK--------VLITGSLNWTTQAIQ------- 148 (196)
T ss_dssp -CCHHHHHHHTTCEEEECCSS----------------SCCCCEEEEETTT--------EEEEESCCBCHHHHH-------
T ss_pred cHHHHHHHHhcCCCccccccc----------------ccccCcEEEEcce--------EEEecCccCChhhhc-------
Confidence 011234567789998765321 2479999999997 999999998774221
Q ss_pred cccccccCCCCCCCcccCCCCCCCCCCeeeeeeeee-ChHHHHHHHHHHHHHhhhc
Q 003210 397 RTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKID-GPAAYDVLTNFEERWRKAS 451 (839)
Q Consensus 397 ~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~-Gpaa~dl~~~F~~rW~~~~ 451 (839)
..| +..+.+. +++|..+.+.|.+.|+...
T Consensus 149 -------------------------~n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~ 178 (196)
T 4ggj_A 149 -------------------------NNR-ENVLIMEDTEYVRLFLEEFERIWEEFD 178 (196)
T ss_dssp -------------------------HCC-EEEEEECCHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------------ccc-eeEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 123 4444555 4579999999999999764
No 25
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.64 E-value=2.7e-16 Score=155.41 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=92.5
Q ss_pred eeceEEEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECC--E--EEEEeeeeeCCCCCeeeeEEEEEc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPV 109 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~~nP~WnE~F~~~v 109 (839)
...|.|.|+|++|++|+.+|. .+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+
T Consensus 27 y~~~~L~V~v~~a~~L~~~d~~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v 91 (171)
T 2q3x_A 27 DKKGQLEVEVIRARSLTQKPGSKST---------------PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE 91 (171)
T ss_dssp EETTEEEEEEEEEESCCCCC---CC---------------CEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS
T ss_pred ECCCEEEEEEEEeeCCCCCCcCCCC---------------CCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe
Confidence 367899999999999999985 566 89999999853 2 355999999999999999999999
Q ss_pred cCCCceEEEEEE-eecCC-CCcceeEEEEeceeeecCccccceeeecCC
Q 003210 110 AHSAAEVHFFVK-DSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 110 ~~~~~~L~~~V~-d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
......|.|+|| |+|.. .+++||++.|+|.++..+...+.||+|...
T Consensus 92 ~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 92 SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred cCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 777789999999 99985 578999999999999878788999999743
No 26
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.64 E-value=4e-16 Score=148.01 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=91.1
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
+..|.|.|+|++|++|+.++..+. +||||+|.+. +....+|++++++.||+|||+|.|.+.
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~ 77 (137)
T 3rdl_A 13 VTDEKLHVTVRDAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77 (137)
T ss_dssp EETTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECC
T ss_pred EcCCEEEEEEEEeeCCCCCCCCCC---------------CCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcC
Confidence 357899999999999999988777 8999999993 233449999999999999999999986
Q ss_pred CC--CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCC
Q 003210 111 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 111 ~~--~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
.. ...|.|+|||+|.. .+++||++.|+|.++..+. .+.||+|.+.
T Consensus 78 ~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred chhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 43 35899999999985 5889999999999998665 7899999754
No 27
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.64 E-value=3.7e-16 Score=150.77 Aligned_cols=105 Identities=24% Similarity=0.378 Sum_probs=91.4
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
+..|.|+|+|++|++|+.++..+. +||||+|.+.. ....||++++++.||+|||+|.|.+.
T Consensus 28 ~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 92 (149)
T 1a25_A 28 IDREVLIVVVRDAKNLVPMDPNGL---------------SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92 (149)
T ss_dssp ESSSEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECC
T ss_pred ecCCEEEEEEEEeeCCCCCCCCCC---------------cCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEec
Confidence 457889999999999999988777 89999999963 33449999999999999999999987
Q ss_pred CC--CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecC
Q 003210 111 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 155 (839)
Q Consensus 111 ~~--~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~ 155 (839)
.. ...|.|+|||+|.. .+++||++.|++.++..+ ..+.||+|.+
T Consensus 93 ~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred cccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 54 36899999999985 588999999999999865 4789999975
No 28
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.64 E-value=1e-16 Score=153.31 Aligned_cols=107 Identities=25% Similarity=0.308 Sum_probs=92.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE-------------EEEEeeeeeCCCCCee
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-------------VVGRTFVISNSEDPVW 101 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~-------------~~~rT~vi~~~~nP~W 101 (839)
+..|.|.|+|++|++|+.++..+. +||||+|.+.+. ...||++++++.||+|
T Consensus 15 y~~~~L~V~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~w 79 (142)
T 1rh8_A 15 YDLGNLIIHILQARNLVPRDNNGY---------------SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79 (142)
T ss_dssp EETTEEEEEEEEEESCCCCSSSSC---------------SCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEE
T ss_pred EcCCEEEEEEEEecCCCCCCCCCC---------------CCceEEEEEecCCCcccccccccccceeeccccCCCCCCCC
Confidence 457899999999999999998777 899999999763 2359999999999999
Q ss_pred eeEEEEE-ccC---CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCC
Q 003210 102 QQHFYVP-VAH---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 102 nE~F~~~-v~~---~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
||+|.|. +.. ....|.|+|||+|.. .+++||++.|+|.++..+...+.||+|...
T Consensus 80 ne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp EEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 9999997 432 346899999999985 588999999999999877778899999743
No 29
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.64 E-value=8.4e-16 Score=146.27 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=87.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE---CCEEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV---AGAVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l---~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..+.|+|+|++|+ +++..+. +||||+|.+ ++....+|+++++++||+|||+|.|.+...
T Consensus 24 ~~~~L~V~v~~a~---~~d~~g~---------------sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~ 85 (138)
T 1wfm_A 24 QKAELFVTRLEAV---TSNHDGG---------------CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85 (138)
T ss_dssp TTTEEEEEEEEEE---CCCCSSC---------------CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred CCCEEEEEEEEEE---cCCCCCC---------------cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHH
Confidence 3678999999999 3666666 899999999 344456999999999999999999998654
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCC
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
...|.|+|||+|.. .+++||++.|+|.++..+...+.|++|...
T Consensus 86 ~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred HcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 36899999999984 589999999999999867778899999743
No 30
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.64 E-value=2.9e-16 Score=149.80 Aligned_cols=105 Identities=24% Similarity=0.320 Sum_probs=88.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.+.|+|+|++|++|+.++..+. +||||+|.+. .....||++++++.||+|||+|.|.+...
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~ 84 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP---------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC---------------CCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred CCEEEEEEEEccCCCCcCCCCC---------------CCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence 4789999999999999998877 8999999992 23344999999999999999999995322
Q ss_pred ----CceEEEEEEeecCCC---CcceeEEEEeceeeecCccccceeeecCCC
Q 003210 113 ----AAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPVLNGS 157 (839)
Q Consensus 113 ----~~~L~~~V~d~d~~~---d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~ 157 (839)
...|.|+|||++..+ +++||++.|+|.++.... .+.||+|...+
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 378999999999865 899999999999987544 78999998543
No 31
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.63 E-value=1.7e-15 Score=162.17 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=107.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
..|.|+|+|++|++|+.++..+. +||||+|.++. ....+|++++++.||+|||+|.|.+...
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~ 81 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS---------------CCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC---------------CCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHH
Confidence 46889999999999999988777 89999999953 2244999999999999999999998643
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeecccc
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 178 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~~ 178 (839)
...|.|+|||+|.. .+++||++.|+|.++..+...+.|++|....+......|+|++.++|.|...
T Consensus 82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG 150 (284)
T ss_dssp CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCC
Confidence 47899999999985 5899999999999999888889999998654433335679999999987543
No 32
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=146.15 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=88.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.+.|.|+|++|++|+.++..+ +||||+|.+.. . ...+|++++++.||+|||+|.|.+...
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g----------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 86 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG----------------SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC----------------CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred CCEEEEEEEEeECCCCCCCCC----------------CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH
Confidence 578999999999999887654 49999999932 2 334999999999999999999998542
Q ss_pred ---CceEEEEEEeecCCC---CcceeEEEEeceeeecCccccceeeecCCCC
Q 003210 113 ---AAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 158 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~~---d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~g 158 (839)
...|.|+|||+|..+ +++||++.|+|.++..+...+.||+|....+
T Consensus 87 ~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp HHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred HhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 358999999999753 4699999999999987777889999985443
No 33
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.62 E-value=9.4e-16 Score=148.56 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=86.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEE--EEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAV--VGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~--~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..+.|.|+|++|++|+.++..+. +||||+|.+ ++.+ ..||++++++.||+|||+|.|.+..
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 92 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL---------------SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 92 (153)
T ss_dssp TTTEEEEEEEEEESCC------C---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC---------------CCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence 46789999999999999988777 899999999 5543 4599999999999999999999876
Q ss_pred CC---ceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCC
Q 003210 112 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 160 (839)
Q Consensus 112 ~~---~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~ 160 (839)
.. ..|.|+|||+|.. .+++||++.|++.+ .+...+.|++|+...+++
T Consensus 93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~ 143 (153)
T 1w15_A 93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQ 143 (153)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCC
T ss_pred HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCe
Confidence 42 6899999999985 58899999999987 355678899998655554
No 34
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.61 E-value=1.3e-15 Score=145.61 Aligned_cols=104 Identities=23% Similarity=0.320 Sum_probs=89.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEE-cc
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP-VA 110 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~-v~ 110 (839)
..+.|.|+|++|++|+.++..+. +||||+|.+.+ ....||++++++.||+|||+|.|. +.
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 91 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL---------------ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC---------------CCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC---------------CCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence 56889999999999999988777 89999999965 234499999999999999999998 54
Q ss_pred CC---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 111 HS---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 111 ~~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
.. ...|.|+|||+|.. .+++||++.|++.++..+...+.|++|.
T Consensus 92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 32 26899999999985 4789999999999999888788888885
No 35
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.61 E-value=6.1e-16 Score=146.91 Aligned_cols=108 Identities=20% Similarity=0.314 Sum_probs=91.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..|.|.|+|++|++|+.++..+. +||||++.+.+ ....+|++++++.||+|||+|.|.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~ 78 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT---------------SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPT 78 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB---------------CCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCG
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC---------------cCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECCh
Confidence 35789999999999999988777 89999999963 234599999999999999999999865
Q ss_pred CC---ceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCC
Q 003210 112 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 160 (839)
Q Consensus 112 ~~---~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~ 160 (839)
.. ..|.|+|||+|.. .+++||++.|++.++. ...+.|++|+...+++
T Consensus 79 ~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~~~ 129 (138)
T 3n5a_A 79 EKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPRQP 129 (138)
T ss_dssp GGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTTCC
T ss_pred hhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCCCe
Confidence 54 6899999999985 5889999999998743 4467899998766665
No 36
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.60 E-value=2.9e-15 Score=142.42 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=87.5
Q ss_pred eceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEE-ccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVP-VAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~-v~~ 111 (839)
..+.|.|+|++|++|+.++.. +. +||||+|.+.. ....||++++++.||+|||+|.|. +..
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~ 84 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT---------------SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB---------------CEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC---------------CCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH
Confidence 467899999999999999875 66 89999999952 344599999999999999999996 543
Q ss_pred C---CceEEEEEEeecCC-CCcceeEEEEeceeeecCcc-ccceeeecC
Q 003210 112 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK-VEGTYPVLN 155 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~-~~~w~~L~~ 155 (839)
. ...|.|+|||+|.. .+++||++.|+|.++..+.. ...|++|..
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred HHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 2 36899999999985 58899999999999987544 456788863
No 37
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.60 E-value=3.4e-15 Score=140.66 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=80.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeee-CCCCCeeeeEEEEEccCCCce
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~-~~~nP~WnE~F~~~v~~~~~~ 115 (839)
.|.|.|+|++|++|+. .+. +||||+|.. +.. +|++++ ++.||+|||+|.|.+......
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~---------------~DPYv~v~~--~~~-kt~~~~~~t~nP~WnE~f~f~v~~~~~~ 62 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEK---------------FNTYVTLKV--QNV-KSTTIAVRGSQPSWEQDFMFEINRLDLG 62 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGG---------------CEEEEEEEE--TTE-EEECCCEESSSCEEEEEEEEEECCCSSE
T ss_pred ceEEEEEEEEeECCCC---CCC---------------cCeEEEEEe--cCE-EEeEecCCCCCceECCEEEEEEeCCCCe
Confidence 4789999999998852 444 899999993 223 555554 699999999999999887788
Q ss_pred EEEEEEeecCCCCcceeEEEEeceeeecCccccc---e----eeecCCCCCCC----CCCceEEEEEEe
Q 003210 116 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEG---T----YPVLNGSGKPC----KPGATLTLSIQY 173 (839)
Q Consensus 116 L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~---w----~~L~~~~gk~~----~~~g~L~l~l~f 173 (839)
|.|+|||+|..+|++||++.|||.++.... .++ | +++..++|+.. .....+.+.++|
T Consensus 63 L~~~V~D~d~~~dd~iG~~~i~l~~l~~~~-~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 63 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSN-EEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEEEEEECCSSCEEEEEEEEEEGGGSCBCS-SCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred EEEEEEECCCCCCCeEEEEEEEHHHhhhcC-CCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 999999999666899999999999987433 222 3 34333344332 233456666665
No 38
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=146.42 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=88.8
Q ss_pred eceEEEEEEEEeeCCCCC-CCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 36 LHGNLDIWIYSAKNLPNM-DMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~-d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
..|.|.|+|++|++|+.. +..+.. + ....+||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~--~-------~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 94 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSR--Q-------DMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFL 94 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSS--C-------TTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHH
T ss_pred CCCEEEEEEEEEeCCCCcccccccc--c-------cCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChH
Confidence 367899999999999984 543310 0 001189999999962 2344999999999999999999998643
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCC
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 159 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk 159 (839)
...|.|+|||+|.. .+++||++.|+|.++..+...+.|++|. +.++
T Consensus 95 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~-~~~~ 144 (147)
T 2enp_A 95 EAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI-PSGP 144 (147)
T ss_dssp HHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB-CCCC
T ss_pred HhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee-cCCC
Confidence 35899999999985 5889999999999998776677899986 4433
No 39
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.59 E-value=4.3e-15 Score=146.03 Aligned_cols=108 Identities=21% Similarity=0.328 Sum_probs=91.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..|.|.|+|++|++|+.++..+. +||||+|.+.+ ....+|++++++.||+|||+|.|.+..
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 99 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY---------------SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 99 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEeECCCCccCCCC---------------CCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence 46889999999999999988777 89999999975 234599999999999999999999865
Q ss_pred C---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCC
Q 003210 112 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 160 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~ 160 (839)
. ...|.|+|||+|.. .+++||++.|++.++. ...+.|++|....+++
T Consensus 100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~~ 150 (166)
T 2cm5_A 100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKK 150 (166)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTCC
T ss_pred HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCCCCc
Confidence 3 35899999999985 5889999999999864 3567888888655543
No 40
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.59 E-value=3.8e-15 Score=145.27 Aligned_cols=102 Identities=28% Similarity=0.375 Sum_probs=83.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEEeeeeeCCCCCeeeeEEEEEccC
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 111 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~~nP~WnE~F~~~v~~ 111 (839)
..|.|.|+|++|++|+.++..+. +||||+|.+. +. ...+|++++++.||+|||+|.|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 87 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence 46889999999999999998777 8999999995 22 34599999999999999999999865
Q ss_pred C---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 112 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 112 ~---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
. ...|.|+|||+|.. .+++||.+.|++..+. ...+.|+.++
T Consensus 88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~w~~l~ 132 (159)
T 1tjx_A 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG--AELRHWSDML 132 (159)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHH
T ss_pred HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCC--cHHHHHHHHH
Confidence 4 35799999999985 5889999999998652 2234444443
No 41
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.58 E-value=6.8e-15 Score=136.97 Aligned_cols=116 Identities=16% Similarity=0.310 Sum_probs=103.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeee-CCCCCeeeeEEEEEccCC---Cc
Q 003210 39 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHS---AA 114 (839)
Q Consensus 39 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~-~~~nP~WnE~F~~~v~~~---~~ 114 (839)
.|+|+|.+|.+|+ ++ +|||+++.+.+.+. +||+++ ++.||+|||.|.+++..+ .+
T Consensus 22 sL~V~l~~a~~Lp-----g~---------------~Dp~akv~FRg~k~-kTkvi~~~~~npvfnE~F~wpl~~~ld~~e 80 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GR---------------ADRIAKVTFRGQSF-YSRVLENCEDVADFDETFRWPVASSIDRNE 80 (144)
T ss_dssp EEEEEEEEEESCC-----SC---------------EEEEEEEEETTEEE-ECCCEEEECSCEEEEEEEEEEESSCCCTTC
T ss_pred EEEEEEEEecCCC-----CC---------------CCCeEEEEEeccce-eeEEeccCCCCceEcceEEecCCCCCCCCC
Confidence 4999999999999 34 79999999998888 999998 699999999999998654 47
Q ss_pred eEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeeccc
Q 003210 115 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 177 (839)
Q Consensus 115 ~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~~ 177 (839)
.|.+.|+|++. +++++||++.++|.++..++....+-+|++.++++.+ +.|.|.++|.|.+
T Consensus 81 ~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~--a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 81 VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK--TSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEE--EEEEEEEEEEETT
T ss_pred EEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccc--cEEEEEEEecCCC
Confidence 89999999998 6689999999999999987777788999999988854 7999999999864
No 42
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.55 E-value=1.9e-14 Score=139.50 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccccccc
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 315 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~~~~~ 315 (839)
..++.+.++|.+|+++|+|+.|.|. ...|.++|.++++|||+||||+ |.......
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~-------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~----------- 68 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFT-------------APDIMKALVAAKKRGVDVKIVI-DERGNTGR----------- 68 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC-------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSH-----------
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeC-------------CHHHHHHHHHHHHCCCEEEEEE-eCcccccc-----------
Confidence 3689999999999999999998652 1479999999999999999997 54432100
Q ss_pred CcHHHHhhhcCCCcEEEeccCccCccccccccccccceecccceEEEEecCCCCCCccEEEEEccccCCCCCCCCCCCCC
Q 003210 316 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 395 (839)
Q Consensus 316 ~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt~~H~~ 395 (839)
......+.|...|+++..+++. ..+|.|++|||++ ++++||.|++...+
T Consensus 69 ~~~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~------- 117 (155)
T 1byr_A 69 ASIAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE------- 117 (155)
T ss_dssp HHHHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH-------
T ss_pred ccHHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc-------
Confidence 0123445566788988776321 2579999999997 99999999986311
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeCh--HHHHHHHHHHHHHhhhc
Q 003210 396 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKAS 451 (839)
Q Consensus 396 ~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gp--aa~dl~~~F~~rW~~~~ 451 (839)
..|++..+.++|+ .+.++...|.+.|+.+.
T Consensus 118 --------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 --------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp --------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred --------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 3467999999994 79999999999998753
No 43
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.52 E-value=1.9e-14 Score=141.22 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=72.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeee-CCCCCeeeeEEEEEccCCCce
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSAAE 115 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~-~~~nP~WnE~F~~~v~~~~~~ 115 (839)
.|.|.|+|++|++|+ ..+. +||||+|.. +.. ||++++ ++.||+|||+|.|.+......
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~---------------~DPYV~v~~--~~~-kt~~~~~~t~nP~WnE~f~f~v~~~~~~ 71 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEK---------------FNTYVTLKV--QNV-ESTTIAVRGSQPSWEQDFMFEINRLDLG 71 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGG---------------CEEEEEEEE--TTE-EEECCCEESSSCEEEEEEEEECCCTTSE
T ss_pred eEEEEEEEEEEECCC---CCCC---------------CCeEEEEEe--cce-EEEEecCCCCCCCCCCEEEEEeeCCCCE
Confidence 367999999999885 2445 899999992 233 676665 699999999999999887788
Q ss_pred EEEEEEeecCCCCcceeEEEEeceeeecC
Q 003210 116 VHFFVKDSDVVGSELIGTVAIPVEQIYSG 144 (839)
Q Consensus 116 L~~~V~d~d~~~d~~IG~~~i~l~~l~~g 144 (839)
|.|+|||+|..+|++||++.|+|.++...
T Consensus 72 L~~~V~D~d~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 72 LTVEVWNKGLIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp EEEEEEECCSSCCEEEEEEEEEGGGSCBC
T ss_pred EEEEEEECCCCCCceEEEEEEEHHHhccc
Confidence 99999999966799999999999998643
No 44
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.51 E-value=5.5e-14 Score=151.44 Aligned_cols=123 Identities=26% Similarity=0.351 Sum_probs=98.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE---CCEEEEEeeeeeCCCCCeeeeEEEEEccCC-
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV---AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l---~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~- 112 (839)
.|.|.|+|++|++|+.+|..+. +||||+|.+ +.++. +|++++++.||+|||+|.|.+...
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~---------------~dPyv~v~l~~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~ 82 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGF---------------SDPYVKIYLLPDRKKKF-QTKVHRKTLNPIFNETFQFSVPLAE 82 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSC---------------CCEEEEEECTTSTTSCE-ECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred CCEEEEEEEEeECCCCcCCCCC---------------cCeEEEEEEEcCCCeeE-eCCccCCCCCCcEeeEEEEEecHHH
Confidence 5789999999999999998877 899999999 34444 999999999999999999998643
Q ss_pred --CceEEEEEEeecCC-CCcceeEEEEe-ceeeec-CccccceeeecCCCCCCCCCCceEEEEEEeecc
Q 003210 113 --AAEVHFFVKDSDVV-GSELIGTVAIP-VEQIYS-GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 176 (839)
Q Consensus 113 --~~~L~~~V~d~d~~-~d~~IG~~~i~-l~~l~~-g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p~ 176 (839)
...|.|+|||+|.. .+++||++.++ +.++.. +...+.|++|....++. ...|+|++.+.|.|.
T Consensus 83 l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK-ADLGELNFSLCYLPT 150 (296)
T ss_dssp GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCC-SCCCEEEEEEEEETT
T ss_pred hcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccc-cccceEEEEEEeccc
Confidence 35899999999985 58999999996 444443 33467899997544332 345799999998764
No 45
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.50 E-value=6.4e-14 Score=135.76 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhh
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 610 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~ 610 (839)
++.++++++|.+|+++|+|+++||. + ..+..+|.+|. +|||+|+|+++..+.. .
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~-~-----------------~~i~~aL~~a~--~rGV~Vril~~~~~~~---~--- 67 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFT-A-----------------PDIMKALVAAK--KRGVDVKIVIDERGNT---G--- 67 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC-C-----------------HHHHHHHHHHH--HTTCEEEEEEESTTCC---S---
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeC-C-----------------HHHHHHHHHHH--HCCCEEEEEEeCcccc---c---
Confidence 6889999999999999999999994 2 24677777764 5899999999975421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEe
Q 003210 611 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 690 (839)
Q Consensus 611 ~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 690 (839)
+. ....++.|.+.|++++.. . . ...+|
T Consensus 68 -----~~-------~~~~~~~L~~~gv~v~~~--------~----------~-----------------------~~~~H 94 (155)
T 1byr_A 68 -----RA-------SIAAMNYIANSGIPLRTD--------S----------N-----------------------FPIQH 94 (155)
T ss_dssp -----HH-------HHHHHHHHHHTTCCEEEE--------C----------S-----------------------SSCCC
T ss_pred -----cc-------cHHHHHHHHHCCCeEEEc--------C----------C-----------------------ccccc
Confidence 01 124577888899876420 0 0 01579
Q ss_pred eeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecc-hh
Q 003210 691 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQP-EY 730 (839)
Q Consensus 691 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~-~~ 730 (839)
+|++||||+++++||+||+.||+. .|.|.++.+.++ +.
T Consensus 95 ~K~~iiD~~~~~iGS~N~~~~~~~--~n~E~~~~i~~~~~l 133 (155)
T 1byr_A 95 DKVIIVDNVTVETGSFNFTKAAET--KNSENAVVIWNMPKL 133 (155)
T ss_dssp CCEEEETTTEEEEESCCBSHHHHH--TSCEEEEEEESCHHH
T ss_pred ceEEEECCCEEEEECCCCCccccc--cCcccEEEEcCcHHH
Confidence 999999999999999999999997 799999999994 54
No 46
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.49 E-value=1.4e-14 Score=149.04 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=105.3
Q ss_pred ccchhhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecCCcccccccccccc
Q 003210 232 YVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDG 311 (839)
Q Consensus 232 y~~~~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~~~s~~~~~~~~~~ 311 (839)
|.+.+.++.|+++|++|+++|+|+.|.|+ ...|.++|++||+|||+||||+ |...+....
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~-------------~~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~~------ 113 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDLAIYTFT-------------SLFLADSIKRALQRGVIIRIIS-DGEMVYSKG------ 113 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEEECSCBC-------------CHHHHHHHHHHHHHTCEEEEEC-CTTTTTSTT------
T ss_pred cCcHHHHHHHHHHHHHhhhEEEEEEEEeC-------------CHHHHHHHHHHHHcCCeEEEEE-echhhhhhH------
Confidence 55567899999999999999999998762 2579999999999999999996 875532110
Q ss_pred ccccCcHHHHhhhcCCCcEEEeccCccCcccccc--cc--ccccceecccceEEEEecCCCCCCccEEEEEccccCCCCC
Q 003210 312 VMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA--KQ--KEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 387 (839)
Q Consensus 312 ~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~--~~--~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r 387 (839)
.....+...++.+............++ .. ...+...+.|.|++|||++ ++++||.|++..-
T Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~s 178 (220)
T 4gel_A 114 -------SQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTALG 178 (220)
T ss_dssp -------CHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHHH
T ss_pred -------HHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCccccccc
Confidence 112223334454443222111011110 00 0012345788888888886 9999999977631
Q ss_pred CCCCCCCCccccccccCCCCCCCcccCCCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHhhhc
Q 003210 388 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKAS 451 (839)
Q Consensus 388 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~ 451 (839)
. ...|.|+.+...|++|..+.+.|.+.|+...
T Consensus 179 ~--------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 179 L--------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp H--------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSE
T ss_pred c--------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 1 2468899999999999999999999999654
No 47
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.49 E-value=3.6e-15 Score=171.14 Aligned_cols=124 Identities=22% Similarity=0.355 Sum_probs=23.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCC---CCCeeeeEEEEEcc
Q 003210 34 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS---EDPVWQQHFYVPVA 110 (839)
Q Consensus 34 ~l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~---~nP~WnE~F~~~v~ 110 (839)
.-..|.|+|+|++|++|+++ .||||++.++++..+||++++++ .||+|||+|.|.+.
T Consensus 7 ~r~~~~L~V~VieAk~L~~~--------------------ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~ 66 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPK--------------------KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66 (483)
T ss_dssp EEEEECC-----------------------------------------------------------------CCEECC--
T ss_pred ceeccEEEEEEEEcCCcCCC--------------------CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC
Confidence 34568899999999999864 38999999998877799999998 99999999999976
Q ss_pred CCCceEEEEEEee-c----CCCCcceeEEEEeceeeecCccccceeeecCCCC---------------------CCCCCC
Q 003210 111 HSAAEVHFFVKDS-D----VVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG---------------------KPCKPG 164 (839)
Q Consensus 111 ~~~~~L~~~V~d~-d----~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~g---------------------k~~~~~ 164 (839)
+....|.|+|||. | ..++++||++.|++.++..+...+.||+|.++.+ +..+..
T Consensus 67 ~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 146 (483)
T 3bxj_A 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGC 146 (483)
T ss_dssp ----------------------------------------CCEECC----------------------------------
T ss_pred CCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCC
Confidence 5568899999994 5 2578999999999999998888899999975442 112345
Q ss_pred ceEEEEEEeeccc
Q 003210 165 ATLTLSIQYTPME 177 (839)
Q Consensus 165 g~L~l~l~f~p~~ 177 (839)
|.|+|+++|.+..
T Consensus 147 G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 147 PAVRLKARYQTMS 159 (483)
T ss_dssp ----CEEEEEECC
T ss_pred ceEEEEEEeeeee
Confidence 7999999998754
No 48
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.48 E-value=1e-13 Score=163.19 Aligned_cols=120 Identities=29% Similarity=0.438 Sum_probs=101.3
Q ss_pred eceEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECC----EEEEEeeeeeCC-CCCeeeeEEEEE
Q 003210 36 LHGNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNS-EDPVWQQHFYVP 108 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~-~nP~WnE~F~~~ 108 (839)
..++|+|+|++|++|+.++. .+. +||||+|.+.+ ....||++++++ .||+|||+|.|.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~---------------~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~ 559 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSI---------------VDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 559 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSC---------------CCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCC---------------CCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEE
Confidence 45789999999999998874 444 89999999944 233499999997 999999999999
Q ss_pred ccCCC-ceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 109 VAHSA-AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 109 v~~~~-~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
+..+. ..|.|+|||+|.. ++++||++.|||.+|..|. +|++|.+..|++. ..+.|.++++|.
T Consensus 560 v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 560 VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ 623 (624)
T ss_dssp ESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEEE
Confidence 88664 7899999999985 6899999999999998764 6999999888875 356888888875
No 49
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.48 E-value=1.4e-13 Score=159.76 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=98.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCCC-c
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-A 114 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~~-~ 114 (839)
..|+|+|+|++|++|+.+|..|. +||||+|.+++++. +|++++++.||+|||+|.|.+.... .
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~---------------sdpyv~v~~~~~~~-~T~~~~~t~nP~w~e~f~f~~~~~~~~ 448 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGK---------------SNPYCEISMGSQSY-TTRTIQDTLNPKWNFNCQFFIKDLYQD 448 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEETTEEE-ECCCCSSCSSCEEEEEEEEEESCTTTC
T ss_pred CCceEEEEeceeecCCCCCCCCC---------------CCeEEEEEECCeec-cCCccCCCCCCccCceEEEEecCCCCC
Confidence 45789999999999999998887 89999999998876 9999999999999999999987654 6
Q ss_pred eEEEEEEeecCC-CCcceeEEEEeceeeecCcc----ccceeeecCCCCCCCCCCceEEEEEEe
Q 003210 115 EVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK----VEGTYPVLNGSGKPCKPGATLTLSIQY 173 (839)
Q Consensus 115 ~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~----~~~w~~L~~~~gk~~~~~g~L~l~l~f 173 (839)
.|.|+|||+|.. .+++||++.+++.++..+.. .+.|++|.+. + .|+|+|.+.+
T Consensus 449 ~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~---~---~G~i~l~~~l 506 (510)
T 3jzy_A 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV---P---TGEVWVRFDL 506 (510)
T ss_dssp EEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS---S---SCEEEEEEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC---C---CceEEEEEEE
Confidence 799999999985 58999999999999986544 6789998632 2 3477777664
No 50
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.48 E-value=5.7e-14 Score=141.66 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhh
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 610 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~ 610 (839)
+....++++|++||++|+|+. |++++ .+++.+|.+| ++|||+|+||+.......
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~-y~~~~-----------------~~i~~aL~~a--a~rGV~Vrii~D~~~~~~------ 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCL-FAFSS-----------------PQLGRAVQLL--HQRGVRVRVITDCDYMAL------ 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEE-SCBCC-----------------HHHHHHHHHH--HHTTCEEEEEESSCCC--------
T ss_pred HHHHHHHHHHHHhheEEEEEE-EEeCC-----------------HHHHHHHHHH--HHcCCcEEEEEecccccc------
Confidence 466889999999999999998 44443 2577888877 469999999996421100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEEEe
Q 003210 611 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 690 (839)
Q Consensus 611 ~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 690 (839)
..+.+..|.++|+++++.. . ..++|
T Consensus 100 --------------~~~~~~~l~~~gi~v~~~~------------------~-----------------------~~~~H 124 (196)
T 4ggj_A 100 --------------NGSQIGLLRKAGIQVRHDQ------------------D-----------------------LGYMH 124 (196)
T ss_dssp ---------------CCHHHHHHHTTCEEEECC------------------S-----------------------SSCCC
T ss_pred --------------cHHHHHHHHhcCCCccccc------------------c-----------------------ccccc
Confidence 0123567888998764210 0 02579
Q ss_pred eeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 691 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 691 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
+|+||||++++++||+||+.||+. .|.|..+++.|++.+
T Consensus 125 ~K~~viD~~~~~~GS~N~t~~~~~--~n~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 125 HKFAIVDKKVLITGSLNWTTQAIQ--NNRENVLIMEDTEYV 163 (196)
T ss_dssp CEEEEETTTEEEEESCCBCHHHHH--HCCEEEEEECCHHHH
T ss_pred CcEEEEcceEEEecCccCChhhhc--ccceeEEEEECHHHH
Confidence 999999999999999999999998 799999999998753
No 51
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.47 E-value=1.9e-13 Score=157.31 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=101.6
Q ss_pred CCCCCCceecCCC--CCCceee--eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEEe
Q 003210 15 SFNGQNMQIVPST--KGSLKVL--LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRT 90 (839)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~--l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT 90 (839)
...++++++=|.+ --.+... ...|.|+|+|++|++|+. |.+++ +||||+|.+++++. ||
T Consensus 367 l~g~~C~C~C~~~~~t~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~---------------sDPYV~v~l~~~~~-kT 429 (540)
T 3nsj_A 367 SSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTA---------------TDAYLKVFFGGQEF-RT 429 (540)
T ss_dssp CSSCTTCEEESCTTTBCGGGCBSSTTEEEEEEEEEEEESCCC-SSCSC---------------CCEEEEEEETTEEE-EC
T ss_pred CCCCceEeeCCCCCCcccccccccCcccEEEEEEEEccCCCc-ccCCC---------------cCeEEEEEECCEee-ee
Confidence 5667777777764 1121111 124789999999999998 88887 89999999999874 99
Q ss_pred eeeeCCCCCeeeeEEEEEccC--CCceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceE
Q 003210 91 FVISNSEDPVWQQHFYVPVAH--SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATL 167 (839)
Q Consensus 91 ~vi~~~~nP~WnE~F~~~v~~--~~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L 167 (839)
+++++++||+|||+|.|.+.. ....|.|+|||+|.. .||+||++.++|. .| ..+.|++|- .|.|
T Consensus 430 kvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l~---------~G~l 496 (540)
T 3nsj_A 430 GVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCELN---------HGRV 496 (540)
T ss_dssp CCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEECS---------SSEE
T ss_pred eeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEcC---------CeEE
Confidence 999999999999999998542 467899999999985 5799999999987 23 366788862 2378
Q ss_pred EEEEEee
Q 003210 168 TLSIQYT 174 (839)
Q Consensus 168 ~l~l~f~ 174 (839)
+++++..
T Consensus 497 ~~~~~~~ 503 (540)
T 3nsj_A 497 KFSYHAK 503 (540)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8877744
No 52
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.38 E-value=3.3e-13 Score=159.94 Aligned_cols=104 Identities=22% Similarity=0.363 Sum_probs=92.3
Q ss_pred eceEEEEEEEEeeCCCC---CCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEEeeeeeCCCCCeeeeEEEEEcc
Q 003210 36 LHGNLDIWIYSAKNLPN---MDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVA 110 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~---~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~~nP~WnE~F~~~v~ 110 (839)
..|+|+|+|++|++|+. +|..++ +||||+|.+.+ ....||++++++.||+|||+|.|.+.
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~---------------sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~ 80 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT---------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 80 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC---------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCC---------------cCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEec
Confidence 46889999999999998 777776 89999999984 23349999999999999999999997
Q ss_pred CC-CceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeec
Q 003210 111 HS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 111 ~~-~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
.. ...|.|+|||+|..++++||++.|+|.++..+...+.|++|.
T Consensus 81 ~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 81 PNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp TTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 64 578999999999866999999999999999888889999995
No 53
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.36 E-value=2.1e-12 Score=138.11 Aligned_cols=101 Identities=29% Similarity=0.383 Sum_probs=82.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.|.|.|+|++|++|+.++..+. +||||+|.+. +. ...+|++++++.||+|||+|.|.+...
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 213 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 213 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTT
T ss_pred CCceEEEEEEeECCCCcCCCCC---------------cCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHH
Confidence 5789999999999999998777 8999999984 33 345999999999999999999998654
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeec
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 154 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~ 154 (839)
...|.|+|||+|.. ++++||++.|++..+. .....|++++
T Consensus 214 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~w~~~~ 257 (284)
T 2r83_A 214 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG--AELRHWSDML 257 (284)
T ss_dssp TGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCH--HHHHHHHHHH
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCC--cHHHHHHHHH
Confidence 35799999999985 5889999999998643 2234444444
No 54
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.29 E-value=8.9e-13 Score=141.98 Aligned_cols=109 Identities=28% Similarity=0.348 Sum_probs=89.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEEeeeeeCCCCCeeeeEEEEEccCC
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 112 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~~nP~WnE~F~~~v~~~ 112 (839)
.|.|+|+|++|++|+.++..+. +||||++.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 215 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF---------------SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 215 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC---------------CCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred cceeEEEEEEeecCCccCCCCC---------------CCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHH
Confidence 5889999999999999998877 8999999995 32 344999999999999999999998754
Q ss_pred ---CceEEEEEEeecCC-CCcceeEEEEeceeeecCccccceeeecCCCCCCC
Q 003210 113 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 161 (839)
Q Consensus 113 ---~~~L~~~V~d~d~~-~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~ 161 (839)
...|.|+|||+|.. .+++||.+.|++.++.. ...+.|++++...+++.
T Consensus 216 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~~ 267 (296)
T 1dqv_A 216 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKPV 267 (296)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSCS
T ss_pred HccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCce
Confidence 25799999999985 58899999999987642 13567877776555553
No 55
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.23 E-value=2.5e-11 Score=145.40 Aligned_cols=113 Identities=27% Similarity=0.395 Sum_probs=92.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEEEeeeeeC-CCCCeeeeE-EEEE
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISN-SEDPVWQQH-FYVP 108 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~------~~~~rT~vi~~-~~nP~WnE~-F~~~ 108 (839)
.++|+|+|++|++|+.. . +||||+|.+.+ ....||+++++ +.||+|||+ |.|.
T Consensus 649 ~~~L~V~Visaq~L~~~----~---------------~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~ 709 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----Q---------------ISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFK 709 (816)
T ss_dssp CEEEEEEEEEEECCCSS----C---------------CCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEE
T ss_pred ceEEEEEEEEcccCCCC----C---------------CCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEc
Confidence 57899999999999852 2 79999999964 13349999986 699999998 9998
Q ss_pred -ccCCC-ceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 109 -VAHSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 109 -v~~~~-~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
+..+. ..|.|+|+|++ +++||++.|||++|..|. ++++|.+..|++.. .+.|.+.+.+..
T Consensus 710 ~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~-~atLfv~i~~~~ 771 (816)
T 3qr0_A 710 KVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLG-LASVFAHIVAKD 771 (816)
T ss_dssp EESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEE-EEEEEEEEEEEE
T ss_pred cccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCC-ceEEEEEEEEEe
Confidence 65443 68999999975 789999999999999774 68999999988763 357878777654
No 56
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.21 E-value=3e-11 Score=142.13 Aligned_cols=119 Identities=23% Similarity=0.295 Sum_probs=90.0
Q ss_pred HHHHHHHHhccc-----eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 003210 534 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 608 (839)
Q Consensus 534 ~ayl~~I~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~ 608 (839)
++++++|++|++ .|+| ++||++.. ..++.+|++| +.+|++|+|+++..+... ...
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------------~~I~~AL~~A--A~rGV~VrVLvd~~a~~~-~~~ 409 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKD----------------SRIIDSMIHA--AHNGKKVTVVVELQARFD-EEA 409 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------------CHHHHHHHHH--HHTTCEEEEEECTTCSST-TTT
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCc----------------HHHHHHHHHH--HhcCCEEEEEECCCcccc-hhh
Confidence 568899999997 9999 99999432 1577778777 459999999999865211 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEE
Q 003210 609 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 688 (839)
Q Consensus 609 ~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 688 (839)
+ ..+++.|.++|+++++.. + ...
T Consensus 410 n----------------~~~~~~L~~aGV~V~~~~-------------------------~----------------~~k 432 (687)
T 1xdp_A 410 N----------------IHWAKRLTEAGVHVIFSA-------------------------P----------------GLK 432 (687)
T ss_dssp T----------------TTTTHHHHHHTCEEEECC-------------------------T----------------TCE
T ss_pred H----------------HHHHHHHHHCCCEEEEec-------------------------C----------------Ccc
Confidence 1 135778999999875310 0 024
Q ss_pred EeeeEEEEee----e---EEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 689 VHSKGMIVDD----E---YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 689 vHSKlmIVDD----~---~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
+|+|++|||+ + |+.|||+|+|.||+. .++|+++.+.++..+
T Consensus 433 ~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i~ 480 (687)
T 1xdp_A 433 IHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARIT 480 (687)
T ss_dssp ECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHHH
T ss_pred ccceEEEEEeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHHH
Confidence 9999999995 4 599999999999998 899999999998743
No 57
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=145.64 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=91.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEEeeeeeC-CCCCeeee-EEEEE-
Q 003210 37 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISN-SEDPVWQQ-HFYVP- 108 (839)
Q Consensus 37 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~vi~~-~~nP~WnE-~F~~~- 108 (839)
..+|+|+|++|++|+.. . +||||+|.+.+ .+..||+++++ +.||+||| +|.|.
T Consensus 724 ~~~L~V~Visaq~L~~~----~---------------~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~ 784 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----K---------------VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPK 784 (885)
T ss_dssp CEEEEEEEEEEESCCSS----C---------------CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEE
T ss_pred ceEEEEEEEEeccCccc----C---------------CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEee
Confidence 44799999999999842 2 79999999954 22349999976 69999999 69998
Q ss_pred ccCC-CceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEeec
Q 003210 109 VAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 175 (839)
Q Consensus 109 v~~~-~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~p 175 (839)
+..+ ...|.|+|+|+| +++||++.|||..|..|. ++++|.+..|++. ..+.|.+.+.+..
T Consensus 785 V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l-~~atLfv~i~~~~ 845 (885)
T 3ohm_B 785 VVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPL-CLPALLIYTEASD 845 (885)
T ss_dssp ESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred EEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCcc-CceEEEEEEEEEe
Confidence 6444 368999999987 889999999999998774 5899999888875 3458888888764
No 58
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.17 E-value=4.7e-11 Score=143.84 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=91.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEEee-eeeC-CCCCeeee-EEEE
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTF-VISN-SEDPVWQQ-HFYV 107 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~-vi~~-~~nP~WnE-~F~~ 107 (839)
..|+|.|+|++|++|+. +. +||||+|.+.+ .+..||+ ++++ +.||+||| +|.|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~---------------~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F 736 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RS---------------VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 736 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SC---------------CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEE
T ss_pred eeeeEEEEEEeccccCc----cC---------------CCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEE
Confidence 46889999999999985 23 79999999943 1234999 8865 69999999 6999
Q ss_pred -EccCC-CceEEEEEEeecCCCCcceeEEEEeceeeecCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 108 -PVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 108 -~v~~~-~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
.+..+ ...|.|+|+|+| +++||++.|||++|..|. +|++|.+..|.+.. .+.|.+++++.
T Consensus 737 ~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~-~~~Lfv~i~~~ 798 (799)
T 2zkm_X 737 EKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLT-MPALFIFLEMK 798 (799)
T ss_dssp EEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEE-EEEEEEEEEEE
T ss_pred EEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCC-ceEEEEEEEEE
Confidence 77544 368999999986 889999999999998763 69999988887653 45888887764
No 59
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.13 E-value=1.2e-10 Score=139.51 Aligned_cols=105 Identities=25% Similarity=0.418 Sum_probs=90.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE-----CCEEEEEeeeeeCCCCCeeeeEEEEEc
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV-----AGAVVGRTFVISNSEDPVWQQHFYVPV 109 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l-----~~~~~~rT~vi~~~~nP~WnE~F~~~v 109 (839)
+..+.|.|+|.+|++|+.+|..+. +||||++.+ ...+. +|+++++++||+|||+|.|.+
T Consensus 169 ~~~~~L~V~v~~a~~L~~~d~~g~---------------sDPyvkv~l~p~~~~~~k~-kT~v~~~tlnP~wne~f~f~~ 232 (674)
T 3pfq_A 169 IDREVLIVVVRDAKNLVPMDPNGL---------------SDPYVKLKLIPDPKSESKQ-KTKTIKSSLNPEWNETFRFQL 232 (674)
T ss_dssp ECSSEEEEEEEEEESCCCCSTTSS---------------CCEEEEEEEESCSSCCSCE-ECCCCSSCSSCEEEEEEEEEC
T ss_pred eccceeeeeeecccccCCCCcccc---------------cCcccccccccCccccccc-cccccccccCCCccceeeeec
Confidence 457889999999999999998887 899999999 22344 999999999999999999998
Q ss_pred cCC--CceEEEEEEeecC-CCCcceeEEEEeceeeecCccccceeeecCC
Q 003210 110 AHS--AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 156 (839)
Q Consensus 110 ~~~--~~~L~~~V~d~d~-~~d~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 156 (839)
... ...|.|+|||+|. ..+++||.+.+++.++..+. .++|++|+.+
T Consensus 233 ~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp CSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred ccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeeccc
Confidence 643 4679999999998 56899999999999998654 5899999854
No 60
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.11 E-value=1.7e-10 Score=118.50 Aligned_cols=136 Identities=20% Similarity=0.108 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhh
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 610 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~ 610 (839)
...+.++++|.+||++|+|+. |++++ .+|+.+|.+| +.|||+|+||+........ .
T Consensus 58 ~~~~~ii~~I~~A~~sI~i~~-Y~~~~-----------------~~I~~aL~~A--a~RGV~VRii~D~~~~~~~--~-- 113 (220)
T 4gel_A 58 RNVAKIVEQIDRAVYSIDLAI-YTFTS-----------------LFLADSIKRA--LQRGVIIRIISDGEMVYSK--G-- 113 (220)
T ss_dssp HHHHHHHHHHHTCSSEEEEEC-SCBCC-----------------HHHHHHHHHH--HHHTCEEEEECCTTTTTST--T--
T ss_pred HHHHHHHHHHHHhhhEEEEEE-EEeCC-----------------HHHHHHHHHH--HHcCCeEEEEEechhhhhh--H--
Confidence 456778999999999999997 55544 2578888887 4589999999975321110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCce--eeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeEE
Q 003210 611 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYL--NFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 688 (839)
Q Consensus 611 ~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 688 (839)
..+..|...|+...+.....+ .-+++ +++. .... +....
T Consensus 114 ----------------~~~~~~~~~~~~~~~~~~~~~~h~K~~v-----iD~~--------------~~~~----~~~~~ 154 (220)
T 4gel_A 114 ----------------SQISMLAQLGVPVRVPITTNLMHNKFCI-----IDGF--------------ERVE----EIRLL 154 (220)
T ss_dssp ----------------CHHHHHHHTTCCEEECCSSSCBCCCEEE-----ESCH--------------HHHH----HHHHH
T ss_pred ----------------HHHHHHHhcCCcEEeecccccccceeEE-----Ecch--------------hccc----ccccc
Confidence 123455566654421000000 00000 0000 0000 00113
Q ss_pred EeeeEEEEeeeEEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 689 VHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 689 vHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
.|.|++++|+.++++||+||+.+|+. .|.|..+++.++..+
T Consensus 155 ~H~K~~v~D~~~v~~GS~N~t~~s~~--~N~E~~~vi~~~~~a 195 (220)
T 4gel_A 155 RKLKFMRPCYSIVISGSVNWTALGLG--GNWENCIITADDKLT 195 (220)
T ss_dssp TTCSCCCCCCCEEEEESCCBSHHHHH--TSBEEEEEECCHHHH
T ss_pred cceeccccccceEEecCccccccccc--cCceEEEEEECHHHH
Confidence 58888888889999999999999998 699999999998753
No 61
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.97 E-value=6.6e-09 Score=93.84 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=73.7
Q ss_pred CCcEEEEEECCEEEE---Ee-eeeeCCCCCeeeeEEEEEccCCCceEEEEEEeecCCCCcceeEEEEeceeee-----cC
Q 003210 74 SDPYVTIAVAGAVVG---RT-FVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIY-----SG 144 (839)
Q Consensus 74 sDPYv~v~l~~~~~~---rT-~vi~~~~nP~WnE~F~~~v~~~~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~-----~g 144 (839)
.||||.|.++..... +| ...++|..|+|||+|.-.+.+ .+.|.|.|++... ++++.+.|++++|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 699999999887765 77 666679999999999999774 4699999997555 99999999999999 34
Q ss_pred ccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 145 GKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 145 ~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
+..+.|++|. + .|+|++.++|+
T Consensus 103 g~~e~WvdLe-P-------~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDLQ-P-------QAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEECB-S-------SCEEEEEEEEE
T ss_pred CceEEEEecc-c-------CcEEEEEEEEe
Confidence 4578999995 3 34899999875
No 62
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.94 E-value=5.4e-09 Score=95.63 Aligned_cols=111 Identities=17% Similarity=0.245 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEE---EEe-eeeeCCCCCeeeeEEEEEccCCC
Q 003210 38 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV---GRT-FVISNSEDPVWQQHFYVPVAHSA 113 (839)
Q Consensus 38 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l~~~~~---~rT-~vi~~~~nP~WnE~F~~~v~~~~ 113 (839)
+.|+|.+.++.-.+-+...+. ..||||.|.++.... ++| ...++|..|+|||+|.-.+.+ .
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~--------------~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-G 74 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGE--------------AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-G 74 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCC--------------CCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-S
T ss_pred cceEEEeeccccCCCCCcccc--------------cCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-C
Confidence 348888877765443221111 169999999998776 788 777779999999999988764 4
Q ss_pred ceEEEEEEeecCCCCcceeEEEEeceeee-----cCccccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 114 AEVHFFVKDSDVVGSELIGTVAIPVEQIY-----SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 114 ~~L~~~V~d~d~~~d~~IG~~~i~l~~l~-----~g~~~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
+.|.|.|++... ++++.+.|++++|. .++..+.|++|. + .|+|++.++|.
T Consensus 75 r~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe-P-------~Gkl~v~i~~~ 129 (138)
T 2enj_A 75 RVMQIIVKGKNV---DLISETTVELYSLAERCRKNNGKTEIWLELK-P-------QGRMLMNARYF 129 (138)
T ss_dssp CEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB-S-------SCEEEEEEEEC
T ss_pred eEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc-c-------CcEEEEEEEEE
Confidence 699999996544 89999999999999 345578999995 3 34899999985
No 63
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.85 E-value=6e-09 Score=118.14 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhh
Q 003210 531 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 610 (839)
Q Consensus 531 sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~~~~ 610 (839)
....+++++|++||++|||++.||.++. +..+++.+|.+|.++++||+|+|+++.....-..-++.
T Consensus 37 ~~~~~l~~~I~~A~~~I~i~~~~~~~d~--------------~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~~ 102 (458)
T 3hsi_A 37 EFKTQIIELIRNAKKRIYVTALYWQKDE--------------AGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGAE 102 (458)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCBCSSH--------------HHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC---
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEEecCc--------------HHHHHHHHHHHHHhcCCCCEEEEEEECccccccccccc
Confidence 5789999999999999999999998753 14568888888877667999999999743100000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--cCCCCCccCceeeeec--CccccccccCCCCCCCCCCCCChhhhcccCceee
Q 003210 611 QRILFWQHKTMQMMYETIYKALVEVG--LEGAFSPQDYLNFFCL--GNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 686 (839)
Q Consensus 611 ~~i~~~~~~t~~~~~~~~~~~L~~~G--~~~~~~p~~y~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (839)
.. ....+++..|.++| +++. + .+|.+ +.++ ..
T Consensus 103 -~~---------~~~~~~~~~L~~~g~nv~v~--~----~~f~~p~~~~~----------------------------~~ 138 (458)
T 3hsi_A 103 -KS---------ATNADWYCEQRQTYQLPDDP--N----MFFGVPINTRE----------------------------VF 138 (458)
T ss_dssp ------------CCHHHHHHHHHHHHTCTTCC--C----CEEEECSSSSG----------------------------GG
T ss_pred -cc---------cccHHHHHHHHhhCCCceEe--e----eecCCcccccc----------------------------cc
Confidence 00 00124677888777 5553 0 01211 1100 01
Q ss_pred EEEeeeEEEEeeeEEEEeccccCCCCCC
Q 003210 687 IYVHSKGMIVDDEYVILGSANINQRSME 714 (839)
Q Consensus 687 iyvHSKlmIVDD~~~iIGSANln~RSm~ 714 (839)
...|.|++||||++++.| +||+++++.
T Consensus 139 ~r~H~Ki~viD~~v~~~G-~Ni~d~y~~ 165 (458)
T 3hsi_A 139 GVLHVKGFVFDDTVLYSG-ASINNVYLH 165 (458)
T ss_dssp CCEECCEEEETTEEEEES-CCBSTTTTT
T ss_pred CcceeeEEEECCCEEEEe-eecCHHHhc
Confidence 268999999999997777 999999986
No 64
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.64 E-value=4.6e-08 Score=112.97 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHhccceEEEeeccc-ccccCCcccccccCCCCccHHHHHHHHHHHHHcCCC--cEEEEEecCCCCCCCC
Q 003210 530 MSIHTAYVKAIRSAQHFIYIENQYF-IGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHER--FAAYIVIPMWPEGVPT 606 (839)
Q Consensus 530 ~sI~~ayl~~I~~A~~~IyIenqYF-i~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g--~~V~ivlP~~peg~~~ 606 (839)
.++..+++++|++||++|||+..+| ..+. +...+..+|.+|. +|| |+|+|++...+.+...
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~--------------~g~~i~~aL~~aa--~rGp~V~Vril~D~~g~~~~~ 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA--------------FQDAIVAGLKESA--AKGNKLKVRILVGAAPVYHMN 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH--------------HHHHHHHHHHHHH--HTTCCEEEEEEEECCC--CCC
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh--------------HHHHHHHHHHHHH--hCCCCcEEEEEEeCccccccc
Confidence 3689999999999999999998663 3321 1346777787775 467 9999999875422111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeee--cCccccccccCCCCCCCCCCCCChhhhcccCce
Q 003210 607 GAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFC--LGNREVIDQTDTSLSGNPTAPNTPEALSRKSGR 684 (839)
Q Consensus 607 ~~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (839)
. ....+.+.|+++|+++. .++.+.. +..... +
T Consensus 129 ~----------------~~~~~~~~L~~~g~~~~----~~~~~~~~~~~~~~~--------------------------~ 162 (506)
T 1v0w_A 129 V----------------IPSKYRDELTAKLGKAA----ENITLNVASMTTSKT--------------------------A 162 (506)
T ss_dssp C----------------HHHHHHHHHHHHHGGGG----GGEEEEEEEECSBTT--------------------------T
T ss_pred c----------------CCHHHHHHHHhccccee----ecCccccccccccCC--------------------------c
Confidence 0 01235677887776542 1222211 000000 0
Q ss_pred eeEEEeeeEEEEeeeEEEEecccc-CCCCCCCC-CCcceEEeeecch
Q 003210 685 FMIYVHSKGMIVDDEYVILGSANI-NQRSMEGT-RDTEIAMGAYQPE 729 (839)
Q Consensus 685 ~~iyvHSKlmIVDD~~~iIGSANl-n~RSm~g~-~DsEi~v~i~d~~ 729 (839)
....|.|++|||++++++||+|| +++.+... .-.++.+.+..|.
T Consensus 163 -~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~~ 208 (506)
T 1v0w_A 163 -FSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGPA 208 (506)
T ss_dssp -TBCBCCCEEEETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESHH
T ss_pred -cccceeeEEEECCcEEEeeccccCccccccCCCCceEEEEEEECHH
Confidence 01469999999999999999998 65554310 2378888888764
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.31 E-value=1.6e-06 Score=101.34 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccc-----eEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCc
Q 003210 533 HTAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTG 607 (839)
Q Consensus 533 ~~ayl~~I~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~peg~~~~ 607 (839)
.++++++|++|++ .|.|+ .|.++.. ..++.+|++| |++|++|+|++....-.. ..
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~A--A~rGv~V~vLvel~arfd-ee 413 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAA--AQSGKKVSVFVELKARFD-EE 413 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHH--HHTTCEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHH--HHCCCEEEEEEeCCCCcc-hh
Confidence 4679999999999 99975 4655432 2578888888 458999999998532111 10
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCccCceeeeecCccccccccCCCCCCCCCCCCChhhhcccCceeeE
Q 003210 608 AATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMI 687 (839)
Q Consensus 608 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~G~~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 687 (839)
++ ....+.|+++|+++.+. +. ..
T Consensus 414 ~n----------------i~wa~~Le~aGv~Vv~g---------~~--------------------------------~l 436 (705)
T 2o8r_A 414 NN----------------LRLSERMRRSGIRIVYS---------MP--------------------------------GL 436 (705)
T ss_dssp -C----------------HHHHHHHHHHTCEEEEC---------CT--------------------------------TC
T ss_pred hh----------------HHHHHHHHHCCCEEEEc---------cC--------------------------------CC
Confidence 11 13567899999987431 00 02
Q ss_pred EEeeeEEEEeee---------EEEEeccccCCCCCCCCCCcceEEeeecchhh
Q 003210 688 YVHSKGMIVDDE---------YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 731 (839)
Q Consensus 688 yvHSKlmIVDD~---------~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 731 (839)
.+|+|+++||++ |+.+|+.|+|+.+.. .-+++++...++..+
T Consensus 437 k~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tar--iy~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 437 KVHAKTALILYHTPAGERPQGIALLSTGNFNETTAR--IYSDTTLMTANTDIV 487 (705)
T ss_dssp CBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSS--CEEEEEEEECCHHHH
T ss_pred CceeEEEEEecccccCCceeEEEeccccceeeeEEE--EEeeeeeeecChHHH
Confidence 479999999988 788999999999997 789999999888753
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0022 Score=69.72 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 003210 530 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 601 (839)
Q Consensus 530 ~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~p 601 (839)
..|.+-+.++|++|++.||+..++... ..+...+.++ ..||++|++++|..|
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~l------------------~~l~~~L~~a--~~RGV~Vrvi~~~~~ 169 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEFF------------------ETIREDLIKT--LERGVTVSLYIDKIP 169 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHHH------------------HHHHHHHHHH--HHTTCEEEEEESSCC
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHHH------------------HHHHHHHHHH--HhCCCEEEEEECCCC
Confidence 478999999999999999998754321 1233445444 359999999998754
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.49 E-value=0.04 Score=59.68 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEE
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLV 295 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLv 295 (839)
.....+.+.|.+|+++|++..|.- .-..+.+.|+++++|||+|++++
T Consensus 119 ~I~~ri~eli~~A~~eI~i~~~~~-------------~l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 119 EAIEMFRESLYSAKNEVIVVTPSE-------------FFETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECHH-------------HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhheEEEEEeCHH-------------HHHHHHHHHHHHHhCCCEEEEEE
Confidence 357899999999999999997621 12467789999999999999997
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=92.83 E-value=0.089 Score=53.53 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcccccEEEEEecccceeEecCCCCCCcchHHHHHHhhhcCCCeEEEEEecC
Q 003210 236 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDD 298 (839)
Q Consensus 236 ~~f~~l~~aI~~A~~~I~I~~w~~~~~~~l~r~~~~~~~~~l~~lL~~kA~~GV~VriLvwd~ 298 (839)
...+.+.+.|++|+++|++..|. + .-..|.+.|++|++|||.|+|+++..
T Consensus 10 ~Ii~r~~e~I~~A~~el~lsi~~---------e----~l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 10 EAIEMFRESLYSAKNEVIVVTPS---------E----FFETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECG---------G----GHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHhhhEEEEEeCH---------H----HHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 35789999999999999998772 1 23679999999999999999999643
No 69
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=85.32 E-value=1.5 Score=43.92 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=34.8
Q ss_pred EEeeeEEEE---eeeEEEEeccccCCCCCCCCCCcceEEeeecch
Q 003210 688 YVHSKGMIV---DDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 729 (839)
Q Consensus 688 yvHSKlmIV---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 729 (839)
.+|+|+... |...++|||.|+..--|. .|-|+++.++++.
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGms--QNvE~sllld~~T 145 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMS--QNIEASLLLDNNT 145 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTT--TSBEEEEEECHHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccc--cceeEEEEEcCCC
Confidence 579998776 468899999999999998 8999999998765
No 70
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=82.73 E-value=2.5 Score=39.71 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=67.4
Q ss_pred cEEEEEECCEEEEEeeeeeCCCCCeeeeEEEEEccCC--------CceEEEEEEeecCCCCcceeEEEEeceeeecCcc-
Q 003210 76 PYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGK- 146 (839)
Q Consensus 76 PYv~v~l~~~~~~rT~vi~~~~nP~WnE~F~~~v~~~--------~~~L~~~V~d~d~~~d~~IG~~~i~l~~l~~g~~- 146 (839)
.||++.+-.-+...|.+.. +.+|.+|-+-++.|.-. ...+.|++..-....-..||+++|++.++.....
T Consensus 44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~ 122 (156)
T 2yrb_A 44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR 122 (156)
T ss_dssp EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence 3566665454443666655 89999998777766432 2468888887654455699999999999985433
Q ss_pred ccceeeecCCCCCCCCCCceEEEEEEee
Q 003210 147 VEGTYPVLNGSGKPCKPGATLTLSIQYT 174 (839)
Q Consensus 147 ~~~w~~L~~~~gk~~~~~g~L~l~l~f~ 174 (839)
+.+..+|.+..|.. ..-|.|.+.++..
T Consensus 123 i~g~~~L~g~~g~~-~~~G~LeywiRL~ 149 (156)
T 2yrb_A 123 IFCTASLIGTKGDI-PNFGTVEYWFRLR 149 (156)
T ss_dssp EEEEEEECBSSSCC-TTSEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCc-ceEEEEEEEEEEe
Confidence 55677888777732 1346888888865
No 71
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=82.31 E-value=4.4 Score=49.30 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=49.8
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEE-
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP- 108 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~- 108 (839)
-....+.|+|..+.++...+ . ++-||.+.+ |++... .|+.+....+|.|||.+.|+
T Consensus 214 ~~~~~f~i~i~~~~~~~~~~---~---------------~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i 275 (940)
T 2wxf_A 214 SLEQPFSIELIEGRKVNADE---R---------------MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDI 275 (940)
T ss_dssp TCCSEEEEEEEEEECCCC---------------------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEE
T ss_pred hcCCceEEEEEEecccCCCC---C---------------ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEccc
Confidence 34566999999999986431 2 578888776 655432 45555557889999976665
Q ss_pred -ccCC--CceEEEEEEeec
Q 003210 109 -VAHS--AAEVHFFVKDSD 124 (839)
Q Consensus 109 -v~~~--~~~L~~~V~d~d 124 (839)
+.+. .+.|.|+||+..
T Consensus 276 ~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 276 SVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp EGGGCCTTCEEEEEEEEEC
T ss_pred ccccCCcccEEEEEEEEec
Confidence 4433 478999999863
No 72
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=76.96 E-value=3.9 Score=40.67 Aligned_cols=51 Identities=8% Similarity=0.255 Sum_probs=36.5
Q ss_pred EEeeeeeCCCCCeeeeEEEEEccCC---CceEEEEEEeecCC--C---CcceeEEEEec
Q 003210 88 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--G---SELIGTVAIPV 138 (839)
Q Consensus 88 ~rT~vi~~~~nP~WnE~F~~~v~~~---~~~L~~~V~d~d~~--~---d~~IG~~~i~l 138 (839)
++|-|...+.+|.|+|++.+.+... ...|.|+++..... + ...+|.+.+||
T Consensus 79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL 137 (220)
T 3l4c_A 79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL 137 (220)
T ss_dssp EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence 3888888899999999999987644 37899999865431 1 23556555554
No 73
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=75.85 E-value=5.9 Score=48.64 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=54.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEE--
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP-- 108 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~-- 108 (839)
....+.|+|..+.++.... ... .+-||.+.+ |++... +|+.+. ..+|.|||...|.
T Consensus 353 ~~~~f~v~i~~~~~~n~~~-~~~---------------~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~ 415 (1091)
T 3hhm_A 353 INSALRIKILCATYVNVNI-RDI---------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIY 415 (1091)
T ss_dssp CCSEEEEEEEEESCCCCCC-SSC---------------CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEE
T ss_pred CCCCEEEEEEEecCCCCCc-ccc---------------ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCc
Confidence 4556899999998886322 111 577888887 443321 344333 5688899965554
Q ss_pred ccCC--CceEEEEEEeecCC-----CCcceeEEEEece
Q 003210 109 VAHS--AAEVHFFVKDSDVV-----GSELIGTVAIPVE 139 (839)
Q Consensus 109 v~~~--~~~L~~~V~d~d~~-----~d~~IG~~~i~l~ 139 (839)
+.+. .+.|.|+|++.... ....||-+.++|-
T Consensus 416 i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 416 IPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp GGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred cccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 4443 48899999986542 1246777777664
No 74
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=63.73 E-value=30 Score=42.14 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=45.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE--EeeeeeCCCCCeeeeEEEEE--c
Q 003210 36 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG--RTFVISNSEDPVWQQHFYVP--V 109 (839)
Q Consensus 36 ~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~--rT~vi~~~~nP~WnE~F~~~--v 109 (839)
+...++|+|..+....... ... ++-||++.+ |++... +|+-+.-+.+|.|||.+.|. +
T Consensus 216 ~~~~f~i~i~~~~~~~~~~-~~~---------------~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i 279 (961)
T 1e7u_A 216 CDRKFRVKIRGIDIPVLPR-TAD---------------LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKI 279 (961)
T ss_dssp CCSEEEEEEEEEECSSCCT-TSC---------------EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEG
T ss_pred ccCceEEEEeecccccccC-CCC---------------ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEecccc
Confidence 4456888888876421000 011 577888765 666553 34444447789999976665 4
Q ss_pred cCC--CceEEEEEEeec
Q 003210 110 AHS--AAEVHFFVKDSD 124 (839)
Q Consensus 110 ~~~--~~~L~~~V~d~d 124 (839)
.+. .+.|.|+||+..
T Consensus 280 ~dLPr~a~L~~ti~~~~ 296 (961)
T 1e7u_A 280 KDLPKGALLNLQIYCGA 296 (961)
T ss_dssp GGCCTTCEEEEEEEEEE
T ss_pred ccCCcccEEEEEEEecc
Confidence 433 478999999754
No 75
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=52.11 E-value=30 Score=34.72 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCcccccccCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 003210 530 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 600 (839)
Q Consensus 530 ~sI~~ayl~~I~~A~~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g~~V~ivlP~~ 600 (839)
..|.+-..++|++|++.|+++ ++... -..+...|.+|. .+|+.|+|++...
T Consensus 9 e~Ii~r~~e~I~~A~~el~ls----i~~e~--------------l~~l~~~L~~A~--~rGV~V~liv~~~ 59 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVV----TPSEF--------------FETIREDLIKTL--ERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEE----ECGGG--------------HHHHHHHHHHHH--HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhhEEEEE----eCHHH--------------HHHHHHHHHHHH--HCCCEEEEEEcCC
Confidence 368888999999999999994 22210 134666676664 5899999999864
No 76
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=50.27 E-value=11 Score=46.50 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=48.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---EeeeeeCCCCCeeeeEEEEE-
Q 003210 35 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP- 108 (839)
Q Consensus 35 l~~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~~nP~WnE~F~~~- 108 (839)
-....+.|+|..+.++...+ . ++-||.+.+ |++... .|+.+....+|.|||.+.|+
T Consensus 350 ~~~~~f~i~i~~~~~~~~~~---~---------------~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i 411 (1092)
T 2y3a_A 350 DNNNPFQITLVKGNKLNTEE---T---------------VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDI 411 (1092)
T ss_dssp CCCSEEEEEECCCCCCCCCS---S---------------CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEE
T ss_pred hcCCCEEEEEEEeccCCCCC---C---------------ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCC
Confidence 34566999999999886431 1 567776554 665542 45444447889999976665
Q ss_pred -ccCC--CceEEEEEEeec
Q 003210 109 -VAHS--AAEVHFFVKDSD 124 (839)
Q Consensus 109 -v~~~--~~~L~~~V~d~d 124 (839)
+.+. .+.|.|+||+..
T Consensus 412 ~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 412 NICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp ESSSCCTTCEEEEECCCC-
T ss_pred ccccCChhcEEEEEEEEec
Confidence 4443 478999999853
No 77
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=23.93 E-value=20 Score=40.65 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=0.0
Q ss_pred CceeeEEEeeeEEE------------------EeeeEEEEeccccCCCCCCCCC------CcceEEee
Q 003210 682 SGRFMIYVHSKGMI------------------VDDEYVILGSANINQRSMEGTR------DTEIAMGA 725 (839)
Q Consensus 682 ~~~~~iyvHSKlmI------------------VDD~~~iIGSANln~RSm~g~~------DsEi~v~i 725 (839)
.+|....-|.|++| +| |+++|||||-.-.+. . +.|++|++
T Consensus 424 s~R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~--W~lltSaNLSkaAWG--~~~k~irnyElGVL~ 487 (544)
T 1q32_A 424 RRRGTTPAHSKFYMHCATNSAGPCDASQVFKELE--WCLYTSANLSQTAWG--TVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTTTTCCBCCEEEEEEEECC-------CTTSEES--EEEEESCCBSHHHHC--CSSSCCSSBEEEEEE
T ss_pred CCCCCccCceEEEEeeccccccccccCCCcccee--EEEEccccCCHHHhh--hhhccccceEeEEEe
No 78
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=22.45 E-value=34 Score=38.04 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=18.2
Q ss_pred EEeeeEEEE---ee-eEEEEeccccC
Q 003210 688 YVHSKGMIV---DD-EYVILGSANIN 709 (839)
Q Consensus 688 yvHSKlmIV---DD-~~~iIGSANln 709 (839)
--|||+||. || ..++|-||||-
T Consensus 103 thHsKmmlL~y~dg~~RVvI~TANl~ 128 (470)
T 3sq7_A 103 SHHTKLIINFYDNGECKIFLPSNNFT 128 (470)
T ss_dssp CBCCCEEEEEETTSEEEEEEESSCBS
T ss_pred CccceeEEEEecCCCEEEEEecCCCC
Confidence 459999996 55 67999999994
No 79
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=21.27 E-value=39 Score=37.64 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred EEeeeEEEE---eeeEEEEeccccCCCCCC
Q 003210 688 YVHSKGMIV---DDEYVILGSANINQRSME 714 (839)
Q Consensus 688 yvHSKlmIV---DD~~~iIGSANln~RSm~ 714 (839)
--|||+||. |+--++|-||||-..=+.
T Consensus 117 thHsKmmiL~y~~glRVVI~TANL~~~DW~ 146 (464)
T 1jy1_A 117 THHTKMMLLLYEEGLRVVIHTSNLIHADWH 146 (464)
T ss_dssp CBCCCEEEEEESSCEEEEEECCCBSGGGGT
T ss_pred ccchhhheeecCCceEEEEeCCCCChhHhc
Confidence 459999987 688999999999876664
No 80
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=21.19 E-value=55 Score=36.42 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=25.6
Q ss_pred eecccceEEEEecCCCCCCccEEEEEccccCCCCCCCC
Q 003210 353 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 390 (839)
Q Consensus 353 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~r~Dt 390 (839)
+.+||-||+|.=.+. ..-..|-..||...-|..
T Consensus 115 fGthHsKmmiL~y~~-----glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 115 FGTHHTKMMLLLYEE-----GLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp TCCBCCCEEEEEESS-----CEEEEEECCCBSGGGGTS
T ss_pred ccccchhhheeecCC-----ceEEEEeCCCCChhHhcc
Confidence 368999999997752 157788899999877754
Done!