Your job contains 1 sequence.
>003213
MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMT
DVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLE
GREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSM
KSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNL
KGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVE
QHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESE
AFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPV
EHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQ
SPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQ
MKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDG
MRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTP
GGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDA
MSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNE
IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003213
(838 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040954 - symbol:AT2G34210 species:3702 "Arabi... 2334 3.5e-242 1
UNIPROTKB|Q5ZI08 - symbol:SUPT5H "Transcription elongatio... 986 2.4e-99 1
MGI|MGI:1202400 - symbol:Supt5 "suppressor of Ty 5" speci... 976 2.8e-98 1
UNIPROTKB|E9PTB2 - symbol:E9PTB2 "Uncharacterized protein... 976 2.8e-98 1
UNIPROTKB|F2Z3T6 - symbol:F2Z3T6 "Uncharacterized protein... 976 2.8e-98 1
ZFIN|ZDB-GENE-001207-1 - symbol:supt5h "suppressor of Ty ... 961 1.1e-96 1
UNIPROTKB|Q5R405 - symbol:SUPT5H "Transcription elongatio... 943 8.7e-95 1
UNIPROTKB|E2RLS8 - symbol:SUPT5H "Uncharacterized protein... 942 1.1e-94 1
UNIPROTKB|O00267 - symbol:SUPT5H "Transcription elongatio... 942 1.1e-94 1
UNIPROTKB|E1BC98 - symbol:SUPT5H "Uncharacterized protein... 941 1.4e-94 1
UNIPROTKB|I3LA48 - symbol:SUPT5H "Uncharacterized protein... 941 1.4e-94 1
UNIPROTKB|I3LMJ9 - symbol:SUPT5H "Uncharacterized protein... 941 1.4e-94 1
DICTYBASE|DDB_G0287661 - symbol:spt5 "transcription initi... 697 1.2e-93 2
FB|FBgn0040273 - symbol:Spt5 "Spt5" species:7227 "Drosoph... 891 2.8e-89 1
TAIR|locus:2179979 - symbol:KTF1 "AT5G04290" species:3702... 446 2.5e-65 3
WB|WBGene00005015 - symbol:spt-5 species:6239 "Caenorhabd... 668 1.1e-64 1
UNIPROTKB|Q21338 - symbol:spt-5 "Transcription elongation... 668 1.1e-64 1
UNIPROTKB|H9L0H1 - symbol:SUPT5H "Transcription elongatio... 401 3.2e-58 2
CGD|CAL0004616 - symbol:SPT5 species:5476 "Candida albica... 534 1.5e-48 2
UNIPROTKB|Q5ALX3 - symbol:SPT5 "Transcription elongation ... 534 1.5e-48 2
SGD|S000004470 - symbol:SPT5 "Component of the universall... 519 1.4e-47 2
POMBASE|SPAC23C4.19 - symbol:spt5 "transcription elongati... 383 7.7e-32 1
TAIR|locus:2137420 - symbol:AT4G08360 "AT4G08360" species... 303 6.8e-26 1
TAIR|locus:4515103232 - symbol:WIH3 "AT3G49845" species:3... 99 0.00048 1
UNIPROTKB|P11414 - symbol:POLR2A "DNA-directed RNA polyme... 122 0.00050 1
UNIPROTKB|I3LQ53 - symbol:I3LQ53 "Uncharacterized protein... 122 0.00063 1
>TAIR|locus:2040954 [details] [associations]
symbol:AT2G34210 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR005825
InterPro:IPR006645 InterPro:IPR017071 PIRSF:PIRSF036945
PROSITE:PS01108 SMART:SM00738 Pfam:PF00467 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0006351
GO:GO:0005840 GO:GO:0003735 GO:GO:0032968 EMBL:AC004481
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
IPI:IPI00546552 IPI:IPI01020486 PIR:T02309 RefSeq:NP_180968.2
UniGene:At.49368 STRING:O80770 PaxDb:O80770 PRIDE:O80770
GeneID:817982 KEGG:ath:AT2G34210 TAIR:At2g34210 eggNOG:COG5164
HOGENOM:HOG000038564 InParanoid:O80770 KO:K15172 OMA:INNANAP
ArrayExpress:O80770 Genevestigator:O80770 GermOnline:AT2G34210
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 Uniprot:O80770
Length = 989
Score = 2334 (826.7 bits), Expect = 3.5e-242, P = 3.5e-242
Identities = 471/703 (66%), Positives = 541/703 (76%)
Query: 1 MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-QKVMLVPIREM 59
MQK +D+GSE +IRS IALDHL+NY+YIEAD EAHVKEA KG+RNIY+ QK++LVPI+EM
Sbjct: 189 MQKIVDRGSEFKIRSAIALDHLQNYVYIEADMEAHVKEAIKGMRNIYANQKILLVPIKEM 248
Query: 60 TDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL 119
T VL+VESKAIDLSRD+WVRMK+G YKGDLA+VVDVDNVR+RVTVKLIPRIDLQALANKL
Sbjct: 249 TAVLSVESKAIDLSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKL 308
Query: 120 EGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVS 179
EG E KKK F PPPRFMN+DEARELHIRVE RRDPMTGDYFENIGGMLFKDGFLYK VS
Sbjct: 309 EGTENVKKKAFAPPPRFMNIDEARELHIRVEHRRDPMTGDYFENIGGMLFKDGFLYKKVS 368
Query: 180 MKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKN 239
KSI+AQN+ PTFDELE+F+ P ENGE D STLFANRKKGHFMKGDAVIVIKGDLKN
Sbjct: 369 TKSIAAQNVTPTFDELERFKRPNENGEIDFVDESTLFANRKKGHFMKGDAVIVIKGDLKN 428
Query: 240 LKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKV 299
LKGW+EKVDEENV IR EMK LP +AVN +ELCKYFEPGN VKVVSG G TGM++KV
Sbjct: 429 LKGWIEKVDEENVLIRSEMKDLPNPIAVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKV 488
Query: 300 EQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVES 359
+QH+LIILSDTTKE I VFAD V +S+EVT G+TKIGDYEL DLV+L + SFGVI++++S
Sbjct: 489 DQHMLIILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYELHDLVILSDFSFGVILKLDS 548
Query: 360 EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGP 419
EA Q+LKGVPD EV++VK EIK K+ KK NVQDR KN VAVKDVVR++EGP KGKQGP
Sbjct: 549 EAIQILKGVPDSSEVSIVKASEIKYKIWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGP 608
Query: 420 VEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIP 479
V IY+G+LFIHDRH+LEH GFIC + SSCV+ GG+ +TP +P
Sbjct: 609 VVQIYKGVLFIHDRHNLEHTGFICTRCSSCVLAGGN----------------FKTPALVP 652
Query: 480 QSPGRYSXXX------XXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSV 533
SP R+ D LVGT VK+RLGP+KGY GR+V+VK + V
Sbjct: 653 PSPRRFQRADMGYNPGAGGRHQGGRGRRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLV 712
Query: 534 RVELESQMKVVTVDRSMISD---NVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMR 590
RVELE+ K+VTV+R ISD NVV TP+Y MGS+TPMHPSRTPLHP MTPMR
Sbjct: 713 RVELEA--KIVTVERKAISDMTDNVVA------TPQYNMGSQTPMHPSRTPLHPCMTPMR 764
Query: 591 DAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAP 650
+GATPIHDGMRTPMR RAWNPY PMSPPRDNWEDGNPGSWGTSP Y+ +P S +
Sbjct: 765 HSGATPIHDGMRTPMRGRAWNPYMPMSPPRDNWEDGNPGSWGTSP-YEAATPGSDWGSST 823
Query: 651 TPGSGW--ASTPGGNYSDAGTPRDSSST-YVNAPSPYLPSTPG 690
S + A TP N ++A +P SST Y+ TPG
Sbjct: 824 PGRSSYRDAGTPINN-ANAPSPMTPSSTSYLPTTPGGQAMTPG 865
Score = 448 (162.8 bits), Expect = 5.6e-39, P = 5.6e-39
Identities = 119/272 (43%), Positives = 154/272 (56%)
Query: 573 TPMHP--SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGS 630
TP + S+TP+HP TP+ TP+ TP+ D TPM W P S
Sbjct: 738 TPQYNMGSQTPMHPSRTPLHPC-MTPMRHSGATPIHD---GMRTPMRGRA--WNPYMPMS 791
Query: 631 WGTSPQYQPGSPPS---RAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSSSTYVNAPSPYL 685
++ G+P S YEA TPGS W +STPG +Y DAGTP +++ NAPSP
Sbjct: 792 -PPRDNWEDGNPGSWGTSPYEAATPGSDWGSSTPGRSSYRDAGTPINNA----NAPSP-- 844
Query: 686 PSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSPVIGADNEGPWFMPDILVR--RS 743
MTP+S SYL LD MS IG D E F+P ILV ++
Sbjct: 845 --------MTPSSTSYLPTTPGGQAMTPGTD-LDVMSLDIGGDAETR-FIPGILVNVHKA 894
Query: 744 GEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGAT 803
GE+ GVIR+VLPDGSC V LG G G+TI A N++ +V P+K +++KI+GG + G+T
Sbjct: 895 GEDRNPGVIRDVLPDGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGST 954
Query: 804 GKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 835
K+IG DG DGIVK+D SLD+KIL + ILAKL
Sbjct: 955 AKVIGEDGQDGIVKLDESLDIKILKLTILAKL 986
>UNIPROTKB|Q5ZI08 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9031 "Gallus gallus" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=ISS]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
GO:GO:0006351 GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250 GO:GO:0032044
KO:K15172 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 EMBL:AJ720976 IPI:IPI00594731 RefSeq:NP_001026555.1
UniGene:Gga.7037 ProteinModelPortal:Q5ZI08 SMR:Q5ZI08 STRING:Q5ZI08
GeneID:426493 KEGG:gga:426493 CTD:6829 HOVERGEN:HBG079775
NextBio:20828050 Uniprot:Q5ZI08
Length = 1079
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 248/716 (34%), Positives = 385/716 (53%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 207 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQM-VPIKEMTDVLKVVK 265
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + ++++K+IPRID + ++ ++ AK
Sbjct: 266 EVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFAK 325
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 326 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 380
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 381 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKIL 438
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 439 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 498
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 499 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVL 558
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++
Sbjct: 559 NMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF 615
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI--PQS 481
RG F+H + +E+ G F+C K+ V+ GGS+ N S F + PRI P
Sbjct: 616 RGFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGS-FAPMS--PRISSPMH 671
Query: 482 PGRYSXXXXXXXXXXXXXXXXHDA-LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQ 540
P D L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 672 PSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHST 731
Query: 541 MKVVTVDRSMISD----------NVVVSTP-Y-RDTPRYGMGSETPMHPSRTPLHPYMTP 588
+ ++VDR ++ + TP Y TP YG GS TPM+ S+TPLH
Sbjct: 732 CQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRT 791
Query: 589 MRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRA 646
TP+HDG RTP + AW+P P +P R +++E G SPQ G+P +
Sbjct: 792 PHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQT 851
Query: 647 YEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPY-LPSTPGGQPMTPNSASY 701
P P S + P N GTP ++ SPY +PS G +P+ SY
Sbjct: 852 PGYPDPSSPQVTQPY-NPQTPGTPAMYNTDQF---SPYAVPSPQGSYQPSPSPQSY 903
Score = 214 (80.4 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 81/255 (31%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 851 TPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAV-PSPQGSYQP-SPSPQSYHQVAP 908
Query: 653 GS-GWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 909 SPVGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 951
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RS---GEESV--VGVIREVLPDGSCRV 763
+ +P G + + W DI V+ R ++V GVIR V G C V
Sbjct: 952 ----PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSV 1006
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E V P K++K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1007 YLKDS---EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDE 1063
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1064 QLKILNLRFLGKLLE 1078
>MGI|MGI:1202400 [details] [associations]
symbol:Supt5 "suppressor of Ty 5" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0016239 "positive regulation of macroautophagy" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0032044 "DSIF
complex" evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=ISO] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=ISO] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 MGI:MGI:1202400
Pfam:PF00467 GO:GO:0045944 GO:GO:0003682 GO:GO:0000122
GO:GO:0006368 GO:GO:0016239 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250
GO:GO:0032044 GO:GO:0032785 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 HOVERGEN:HBG079775 OrthoDB:EOG42V8FG
OMA:VGQTGII ChiTaRS:SUPT5H EMBL:U88539 EMBL:AK145117 EMBL:AK146055
EMBL:AK146453 EMBL:AK146583 EMBL:AK146650 EMBL:BC007132
EMBL:BC057449 EMBL:BC058598 EMBL:BC059849 IPI:IPI00453975
IPI:IPI00656221 PIR:T42204 RefSeq:NP_038704.1 UniGene:Mm.285906
ProteinModelPortal:O55201 SMR:O55201 STRING:O55201
PhosphoSite:O55201 PaxDb:O55201 PRIDE:O55201
Ensembl:ENSMUST00000003527 GeneID:20924 KEGG:mmu:20924
UCSC:uc009fyh.1 UCSC:uc009fyi.1 CTD:20924 InParanoid:O55201
NextBio:299833 Bgee:O55201 CleanEx:MM_SUPT5H Genevestigator:O55201
GermOnline:ENSMUSG00000003435 Uniprot:O55201
Length = 1082
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 245/718 (34%), Positives = 395/718 (55%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 208 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 266
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 267 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 326
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 327 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 381
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G V
Sbjct: 382 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKVL 439
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 440 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 499
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 500 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVL 559
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D ++N + VKD+V++++GP G++G + H+Y
Sbjct: 560 NM---HGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLY 616
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRN--GDAYSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 617 RSFAFLHCKKLVENGGMFVC-KARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSA 675
Query: 482 PGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQM 541
G++ ++ L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 676 EGQHGGFGSPGGMSRGRGRRDNE-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC 734
Query: 542 KVVTVDRSMIS--DNVV---VSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA-- 592
+ ++VDR ++ D+ +++ Y TP YG S+TPM+ S RTP++ TP++D
Sbjct: 735 QTISVDRQRLTTVDSQRPGGMTSTYGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSR 792
Query: 593 ----GA-TPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSR 645
G+ TP+HDG RTP + AW+P P +P R + +E SPQ G+P +
Sbjct: 793 TPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQ 852
Query: 646 AYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 701
P P S + P N GTP ++ SPY +P G QP +P+ SY
Sbjct: 853 TPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQF---SPYAAPSPQGSYQP-SPSPQSY 905
Score = 215 (80.7 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 80/256 (31%), Positives = 123/256 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 853 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 910
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 911 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 953
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + +VG VIR V G C V
Sbjct: 954 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSV 1008
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS- 821
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGI+++D+
Sbjct: 1009 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 1065
Query: 822 LDVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1066 QQIKILNLRFLGKLLE 1081
>UNIPROTKB|E9PTB2 [details] [associations]
symbol:E9PTB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0045944 GO:GO:0003682 GO:GO:0000122
GO:GO:0006368 GO:GO:0016239 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 GO:GO:0032044
GO:GO:0032785 KO:K15172 InterPro:IPR022581 InterPro:IPR005100
Pfam:PF03439 Pfam:PF11942 GeneTree:ENSGT00440000037640 CTD:6829
IPI:IPI00198210 RefSeq:NP_001100967.2 RefSeq:XP_003753275.1
UniGene:Rn.100021 UniGene:Rn.220352 PRIDE:E9PTB2
Ensembl:ENSRNOT00000048905 GeneID:308472 KEGG:rno:308472
ArrayExpress:E9PTB2 Uniprot:E9PTB2
Length = 1083
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 245/718 (34%), Positives = 395/718 (55%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 209 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 267
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 268 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 327
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 328 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 382
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G V
Sbjct: 383 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKVL 440
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 441 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 500
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 501 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVL 560
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D ++N + VKD+V++++GP G++G + H+Y
Sbjct: 561 NM---HGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLY 617
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRN--GDAYSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 618 RSFAFLHCKKLVENGGMFVC-KARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSA 676
Query: 482 PGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQM 541
G++ ++ L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 677 EGQHGGFGSPGGMSRGRGRRDNE-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC 735
Query: 542 KVVTVDRSMIS--DNVV---VSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA-- 592
+ ++VDR ++ D+ +++ Y TP YG S+TPM+ S RTP++ TP++D
Sbjct: 736 QTISVDRQRLTTVDSQRPGGMTSTYGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSR 793
Query: 593 ----GA-TPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSR 645
G+ TP+HDG RTP + AW+P P +P R + +E SPQ G+P +
Sbjct: 794 TPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQ 853
Query: 646 AYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 701
P P S + P N GTP ++ SPY +P G QP +P+ SY
Sbjct: 854 TPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQF---SPYAAPSPQGSYQP-SPSPQSY 906
Score = 215 (80.7 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 80/256 (31%), Positives = 123/256 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 854 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 911
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 912 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 954
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + +VG VIR V G C V
Sbjct: 955 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSV 1009
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS- 821
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGI+++D+
Sbjct: 1010 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 1066
Query: 822 LDVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1067 QQIKILNLRFLGKLLE 1082
>UNIPROTKB|F2Z3T6 [details] [associations]
symbol:F2Z3T6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM01104 Pfam:PF00467 GO:GO:0006357 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0032784 InterPro:IPR005824 SMART:SM00739
InterPro:IPR005100 Pfam:PF03439 GeneTree:ENSGT00440000037640
IPI:IPI00781937 ProteinModelPortal:F2Z3T6 PRIDE:F2Z3T6
Ensembl:ENSRNOT00000057470 Uniprot:F2Z3T6
Length = 888
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 245/718 (34%), Positives = 395/718 (55%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 14 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 72
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 73 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 132
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 133 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 187
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G V
Sbjct: 188 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKVL 245
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 246 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 305
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 306 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVL 365
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D ++N + VKD+V++++GP G++G + H+Y
Sbjct: 366 NM---HGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLY 422
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRN--GDAYSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 423 RSFAFLHCKKLVENGGMFVC-KARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSA 481
Query: 482 PGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQM 541
G++ ++ L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 482 EGQHGGFGSPGGMSRGRGRRDNE-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC 540
Query: 542 KVVTVDRSMIS--DNVV---VSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMRDA-- 592
+ ++VDR ++ D+ +++ Y TP YG S+TPM+ S RTP++ TP++D
Sbjct: 541 QTISVDRQRLTTVDSQRPGGMTSTYGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQDGSR 598
Query: 593 ----GA-TPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSR 645
G+ TP+HDG RTP + AW+P P +P R + +E SPQ G+P +
Sbjct: 599 TPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQ 658
Query: 646 AYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPNSASY 701
P P S + P N GTP ++ SPY +P G QP +P+ SY
Sbjct: 659 TPGYPDPSSPQVN-PQYNPQTPGTPAMYNTDQF---SPYAAPSPQGSYQP-SPSPQSY 711
Score = 215 (80.7 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 80/256 (31%), Positives = 123/256 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 659 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 716
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 717 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 759
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + +VG VIR V G C V
Sbjct: 760 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSV 814
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS- 821
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGI+++D+
Sbjct: 815 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 871
Query: 822 LDVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 872 QQIKILNLRFLGKLLE 887
>ZFIN|ZDB-GENE-001207-1 [details] [associations]
symbol:supt5h "suppressor of Ty 5 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA;IMP]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0032044 "DSIF
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
ZFIN:ZDB-GENE-001207-1 GO:GO:0001764 GO:GO:0030097 GO:GO:0006368
GO:GO:0034244 GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250 GO:GO:0032044
HOGENOM:HOG000038564 InterPro:IPR022581 InterPro:IPR005100
Pfam:PF03439 Pfam:PF11942 HOVERGEN:HBG079775 EMBL:AF288409
EMBL:BC057529 IPI:IPI00485845 IPI:IPI00510595 UniGene:Dr.33072
ProteinModelPortal:Q9DDT5 SMR:Q9DDT5 STRING:Q9DDT5 PRIDE:Q9DDT5
InParanoid:Q9DDT5 OrthoDB:EOG42V8FG ArrayExpress:Q9DDT5
Uniprot:Q9DDT5
Length = 1084
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 250/732 (34%), Positives = 389/732 (53%)
Query: 3 KCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIRE 58
+C D + LQI+SV+A +H+K YIY+EA K+ HVK A +G+ N+ ++Q+ +VPI+E
Sbjct: 203 QCTD--TPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAIEGVGNLRMGFWNQQ--MVPIKE 258
Query: 59 MTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANK 118
MTDVL V + +L +WVR+K G YK D+A+V V+ + +++K+IPRIDL + +
Sbjct: 259 MTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQNTISLKMIPRIDLDRIKAR 318
Query: 119 LEGRE-VAKKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYK 176
+ ++ AK+K F PP R + ++ R L V D M FE + GFL+K
Sbjct: 319 MSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSHDGDFMI---FE--ANRYSRKGFLFK 373
Query: 177 TVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGD 236
+ +M ++ + ++PT ELEKF E + ++ + +T ++ + GD V V +G+
Sbjct: 374 SFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETT--GKEREHNLQAGDNVEVCEGE 431
Query: 237 LKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMV 296
L NL+G + VD + I P+ + L L + EL KYF G+HVKV++G G TG++
Sbjct: 432 LINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIAGRYEGDTGLI 491
Query: 297 LKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIR 356
++VE++ +I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R
Sbjct: 492 VRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQLDPQTVGVIVR 551
Query: 357 VESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKG 415
+E E FQVL +V V+ + + + + + V D +N + VKD+V++++GP G
Sbjct: 552 LERETFQVLNM---HGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKVIDGPHSG 608
Query: 416 KQGPVEHIYRGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRT 474
++G + HI+RG F+H + +E+ G F+C K+ V+ GGS+ D F +
Sbjct: 609 REGEIRHIFRGFAFLHCKKLVENGGMFVC-KARHLVLAGGSKPR-DVTNFTVGGFAPMS- 665
Query: 475 PPRI--PQSPG------RYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVV 526
PRI P PG R +D L+G TV++ GPYKGY G V
Sbjct: 666 -PRISSPMHPGGGGQPQRGGGGGGGGGMGRGRGRRDND-LIGQTVRISQGPYKGYIGVVK 723
Query: 527 DVKGQSVRVELESQMKVVTVDRSMIS----------DNVVVSTP-Y-RDTPRYGMGSETP 574
D + RVEL S + ++VDR ++ + + TP Y TP YG GS TP
Sbjct: 724 DATESTARVELHSTCQTISVDRQRLTTVGGKERQGRSSTHLRTPMYGSQTPIYGTGSRTP 783
Query: 575 MHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSP--PRDNWEDGNPGSWG 632
M+ S+TPLH TP+HDG RTP + AW+P P +P P D +E
Sbjct: 784 MYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPS 843
Query: 633 TSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG 691
SPQ G+P + TPG +P N + TP + + SPY +P G
Sbjct: 844 PSPQGYGGTPNPQ-----TPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQG 898
Query: 692 --QPMTPNSASY 701
QP +P+ SY
Sbjct: 899 SYQP-SPSPQSY 909
Score = 216 (81.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 79/252 (31%), Positives = 120/252 (47%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 857 TPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYA-APSPQGSYQP-SPSPQSYHQVAP 914
Query: 653 GS-GWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 915 SPVGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS-----PGGYN 962
Query: 711 XXXXXXXLDAMSPVIGADNEGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVV 764
+D A N+ W DI+VR G + G+IR V G C V
Sbjct: 963 PHTPGSNIDQ------ASND--WVTTDIMVRVKDTFLDGGVINQTGIIRSVT-GGMCSVF 1013
Query: 765 LGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLD 823
L + + + ++ +E +E V P K +K+K++ G R ATG L+ +DG DGIV++++
Sbjct: 1014 LQDT---EKVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQ 1070
Query: 824 VKILDMAILAKL 835
+KIL++ L KL
Sbjct: 1071 LKILNLRFLGKL 1082
>UNIPROTKB|Q5R405 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9601 "Pongo abelii" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0006351 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 GO:GO:0032044
KO:K15172 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 CTD:6829 HOVERGEN:HBG079775 EMBL:CR861455
RefSeq:NP_001127053.1 UniGene:Pab.890 ProteinModelPortal:Q5R405
SMR:Q5R405 PRIDE:Q5R405 GeneID:100174081 KEGG:pon:100174081
InParanoid:Q5R405 Uniprot:Q5R405
Length = 1083
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 245/725 (33%), Positives = 392/725 (54%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 206 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 264
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 265 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 324
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 325 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 379
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGH-FMKGDAVIVIKGDLKNLKGWV 244
+ ++PT ELEKF E + ++ + ST R++ H F GD V V +G+L NL+G +
Sbjct: 380 EGVKPTLSELEKFEDQPEGIDLEVVTEST---GREREHNFQPGDNVEVCEGELINLQGKI 436
Query: 245 EKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVL 304
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +
Sbjct: 437 LSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFV 496
Query: 305 IILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQV 364
I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQV
Sbjct: 497 ILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQV 556
Query: 365 LKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHI 423
L +V V+ + + K + + V D +N + VKD+V++++GP G++G + H+
Sbjct: 557 LNMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHL 613
Query: 424 YRGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQ 480
+R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P
Sbjct: 614 FRSFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPS 672
Query: 481 SPGR---YSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVEL 537
+ G+ + + L+G TV++ GPYKGY G V D + RVEL
Sbjct: 673 AGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVEL 732
Query: 538 ESQMKVVTVDRSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPM 589
S + ++VDR ++ + ST Y TP YG S+TPM+ S RTP++ TP+
Sbjct: 733 HSTCQTISVDRQRLTTVGSRRPGGMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPL 789
Query: 590 RDA------GA-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP--- 639
+D G+ TP+HDG RTP + AW+P P +P R E+ ++ P P
Sbjct: 790 QDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAY 847
Query: 640 GSPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTP 696
G P+ TPG S+P N + TP + + SPY +P G QP +P
Sbjct: 848 GGTPN----PQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SP 902
Query: 697 NSASY 701
+ SY
Sbjct: 903 SPQSY 907
Score = 220 (82.5 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 82/255 (32%), Positives = 122/255 (47%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 855 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 912
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 913 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 955
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 956 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1010
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D
Sbjct: 1011 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDE 1067
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1068 QLKILNLRFLGKLLE 1082
>UNIPROTKB|E2RLS8 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 CTD:6829 OMA:VGQTGII EMBL:AAEX03000956
RefSeq:XP_533673.2 Ensembl:ENSCAFT00000008856 GeneID:476462
KEGG:cfa:476462 Uniprot:E2RLS8
Length = 1087
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 243/724 (33%), Positives = 391/724 (54%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 210 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 268
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 269 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 328
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 329 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 383
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 384 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKIL 441
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 442 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 501
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 502 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVL 561
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++
Sbjct: 562 NMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF 618
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 619 RSFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSA 677
Query: 482 PGR---YSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
G+ + + L+G TV++ GPYKGY G V D + RVEL
Sbjct: 678 GGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 737
Query: 539 SQMKVVTVDRSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMR 590
S + ++VDR ++ + ST Y TP YG S+TPM+ S RTP++ TP++
Sbjct: 738 STCQTISVDRQRLTTVGSRRPGGMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQ 794
Query: 591 DA------GA-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---G 640
D G+ TP+HDG RTP + AW+P P +P R E+ ++ P P G
Sbjct: 795 DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYG 852
Query: 641 SPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPN 697
P+ TPG S+P N + TP + + SPY +P G QP +P+
Sbjct: 853 GTPN----PQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPS 907
Query: 698 SASY 701
SY
Sbjct: 908 PQSY 911
Score = 223 (83.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 859 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 916
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 917 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 959
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 960 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1014
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1015 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1071
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1072 QLKILNLRFLGKLLE 1086
>UNIPROTKB|O00267 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9606 "Homo sapiens" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0010033 "response to organic substance"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0007049 "cell
cycle" evidence=NAS] [GO:0045090 "retroviral genome replication"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0032044 "DSIF complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016239 "positive regulation of macroautophagy"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 Reactome:REACT_116125 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0010033 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0007049 GO:GO:0006368 GO:GO:0016239
Reactome:REACT_1788 GO:GO:0032968 GO:GO:0006370 GO:GO:0050434
Reactome:REACT_1892 GO:GO:0032786 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250
GO:GO:0045090 GO:GO:0032044 GO:GO:0032785 PDB:3H7H PDBsum:3H7H
HOGENOM:HOG000038564 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942 CTD:6829
HOVERGEN:HBG079775 OMA:VGQTGII EMBL:U56402 EMBL:Y12790
EMBL:AB000516 EMBL:AF040253 EMBL:AB209257 EMBL:BC024203
IPI:IPI00298058 IPI:IPI00655641 RefSeq:NP_001104490.1
RefSeq:NP_001124296.1 RefSeq:NP_001124297.1 RefSeq:NP_003160.2
UniGene:Hs.631604 PDB:2DO3 PDB:2E6Z PDB:2E70 PDBsum:2DO3
PDBsum:2E6Z PDBsum:2E70 ProteinModelPortal:O00267 SMR:O00267
DIP:DIP-29014N IntAct:O00267 MINT:MINT-1193818 STRING:O00267
PhosphoSite:O00267 PaxDb:O00267 PRIDE:O00267 DNASU:6829
Ensembl:ENST00000359191 Ensembl:ENST00000402194
Ensembl:ENST00000432763 GeneID:6829 KEGG:hsa:6829 UCSC:uc002oln.4
UCSC:uc002olq.4 GeneCards:GC19P039936 HGNC:HGNC:11469 HPA:CAB034370
HPA:HPA029273 MIM:602102 neXtProt:NX_O00267 PharmGKB:PA36255
InParanoid:O00267 PhylomeDB:O00267 ChiTaRS:SUPT5H
EvolutionaryTrace:O00267 GenomeRNAi:6829 NextBio:26663
ArrayExpress:O00267 Bgee:O00267 CleanEx:HS_SUPT5H
Genevestigator:O00267 GermOnline:ENSG00000196235 Uniprot:O00267
Length = 1087
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 243/724 (33%), Positives = 391/724 (54%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 210 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 268
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 269 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 328
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 329 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 383
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 384 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKIL 441
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 442 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 501
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 502 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVL 561
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++
Sbjct: 562 NMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF 618
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 619 RSFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSA 677
Query: 482 PGR---YSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
G+ + + L+G TV++ GPYKGY G V D + RVEL
Sbjct: 678 GGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 737
Query: 539 SQMKVVTVDRSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMR 590
S + ++VDR ++ + ST Y TP YG S+TPM+ S RTP++ TP++
Sbjct: 738 STCQTISVDRQRLTTVGSRRPGGMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQ 794
Query: 591 DA------GA-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---G 640
D G+ TP+HDG RTP + AW+P P +P R E+ ++ P P G
Sbjct: 795 DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYG 852
Query: 641 SPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPN 697
P+ TPG S+P N + TP + + SPY +P G QP +P+
Sbjct: 853 GTPN----PQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPS 907
Query: 698 SASY 701
SY
Sbjct: 908 PQSY 911
Score = 223 (83.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 859 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 916
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 917 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 959
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 960 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1014
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1015 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1071
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1072 QLKILNLRFLGKLLE 1086
>UNIPROTKB|E1BC98 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 InterPro:IPR005100
Pfam:PF03439 GeneTree:ENSGT00440000037640 OMA:VGQTGII
EMBL:DAAA02047062 EMBL:DAAA02047059 EMBL:DAAA02047060
EMBL:DAAA02047061 IPI:IPI00842593 Ensembl:ENSBTAT00000044229
ArrayExpress:E1BC98 Uniprot:E1BC98
Length = 1083
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 243/724 (33%), Positives = 391/724 (54%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 206 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 264
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 265 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 324
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 325 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 379
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 380 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKIL 437
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 438 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 497
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 498 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVL 557
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++
Sbjct: 558 NMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF 614
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 615 RSFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSA 673
Query: 482 PGR---YSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
G+ + + L+G TV++ GPYKGY G V D + RVEL
Sbjct: 674 GGQRGGFGSPGGGGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 733
Query: 539 SQMKVVTVDRSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMR 590
S + ++VDR ++ + ST Y TP YG S+TPM+ S RTP++ TP++
Sbjct: 734 STCQTISVDRQRLTTVGSRRPGGMAST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQ 790
Query: 591 DA------GA-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---G 640
D G+ TP+HDG RTP + AW+P P +P R E+ ++ P P G
Sbjct: 791 DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYG 848
Query: 641 SPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPN 697
P+ TPG S+P N + TP + + SPY +P G QP +P+
Sbjct: 849 GTPN----PQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPS 903
Query: 698 SASY 701
SY
Sbjct: 904 PQSY 907
Score = 223 (83.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 855 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 912
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 913 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 955
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 956 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1010
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1011 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1067
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1068 QLKILNLRFLGKLLE 1082
>UNIPROTKB|I3LA48 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 GeneTree:ENSGT00440000037640 EMBL:FP102918
Ensembl:ENSSSCT00000031855 Uniprot:I3LA48
Length = 1083
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 243/724 (33%), Positives = 391/724 (54%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 206 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 264
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 265 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 324
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 325 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 379
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 380 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKIL 437
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 438 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 497
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 498 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVL 557
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++
Sbjct: 558 NMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF 614
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 615 RSFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSA 673
Query: 482 PGR---YSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
G+ + + L+G TV++ GPYKGY G V D + RVEL
Sbjct: 674 GGQRGGFGSPGGGGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 733
Query: 539 SQMKVVTVDRSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMR 590
S + ++VDR ++ + ST Y TP YG S+TPM+ S RTP++ TP++
Sbjct: 734 STCQTISVDRQRLTTVGSRRPGGMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQ 790
Query: 591 DA------GA-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---G 640
D G+ TP+HDG RTP + AW+P P +P R E+ ++ P P G
Sbjct: 791 DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYG 848
Query: 641 SPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPN 697
P+ TPG S+P N + TP + + SPY +P G QP +P+
Sbjct: 849 GTPN----PQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPS 903
Query: 698 SASY 701
SY
Sbjct: 904 PQSY 907
Score = 223 (83.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 855 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 912
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 913 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 955
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 956 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1010
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1011 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1067
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1068 QLKILNLRFLGKLLE 1082
>UNIPROTKB|I3LMJ9 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 OMA:VGQTGII EMBL:FP102918
Ensembl:ENSSSCT00000030229 Uniprot:I3LMJ9
Length = 1088
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 243/724 (33%), Positives = 391/724 (54%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI---YSQKVMLVPIREMTDVLAVES 67
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ Y + M VPI+EMTDVL V
Sbjct: 211 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQM-VPIKEMTDVLKVVK 269
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VAK 126
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ AK
Sbjct: 270 EVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAK 329
Query: 127 KKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 330 RKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVIT 384
Query: 186 QNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVE 245
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 385 EGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKIL 442
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLI 305
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +I
Sbjct: 443 SVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 502
Query: 306 ILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL 365
+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQVL
Sbjct: 503 LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVL 562
Query: 366 KGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++
Sbjct: 563 NMYG---KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF 619
Query: 425 RGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDA--YSRFNSLRTPPRIPQS 481
R F+H + +E+ G F+C K+ V+ GGS+ N ++ + + P P +
Sbjct: 620 RSFAFLHCKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSA 678
Query: 482 PGR---YSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
G+ + + L+G TV++ GPYKGY G V D + RVEL
Sbjct: 679 GGQRGGFGSPGGGGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 738
Query: 539 SQMKVVTVDRSMISD------NVVVSTPYRDTPRYGMGSETPMHPS--RTPLHPYMTPMR 590
S + ++VDR ++ + ST Y TP YG S+TPM+ S RTP++ TP++
Sbjct: 739 STCQTISVDRQRLTTVGSRRPGGMTST-YGRTPMYG--SQTPMYGSGSRTPMYGSQTPLQ 795
Query: 591 DA------GA-TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP---G 640
D G+ TP+HDG RTP + AW+P P +P R E+ ++ P P G
Sbjct: 796 DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRA--EEEYEYAFDDEPTPSPQAYG 853
Query: 641 SPPSRAYEAPTPGSGWASTPGGNYS-DAGTPRDSSSTYVNAPSPYLPSTPGG--QPMTPN 697
P+ TPG S+P N + TP + + SPY +P G QP +P+
Sbjct: 854 GTPN----PQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP-SPS 908
Query: 698 SASY 701
SY
Sbjct: 909 PQSY 912
Score = 223 (83.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/255 (32%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 860 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYA-APSPQGSYQP-SPSPQSYHQVAP 917
Query: 653 G-SGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
+G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 918 SPAGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 960
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RSG--EESVVG---VIREVLPDGSCRV 763
+ +P G + N W DI V+ R + VVG VIR V G C V
Sbjct: 961 ----PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSV 1015
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E + P K +K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 1016 YLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1072
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 1073 QLKILNLRFLGKLLE 1087
>DICTYBASE|DDB_G0287661 [details] [associations]
symbol:spt5 "transcription initiation factor Spt5"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005825
InterPro:IPR017071 PIRSF:PIRSF036945 PROSITE:PS01108
dictyBase:DDB_G0287661 Pfam:PF00467 GO:GO:0005634 GO:GO:0045944
GenomeReviews:CM000154_GR EMBL:AAFI02000103 GO:GO:0005840
GO:GO:0000122 GO:GO:0003735 GO:GO:0003743 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0032784
InterPro:IPR005824 SMART:SM00739 eggNOG:COG5164 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 OMA:VGQTGII RefSeq:XP_637122.1
ProteinModelPortal:Q54K42 SMR:Q54K42 STRING:Q54K42 PRIDE:Q54K42
EnsemblProtists:DDB0238500 GeneID:8626217 KEGG:ddi:DDB_G0287661
Uniprot:Q54K42
Length = 1131
Score = 697 (250.4 bits), Expect = 1.2e-93, Sum P(2) = 1.2e-93
Identities = 225/746 (30%), Positives = 354/746 (47%)
Query: 126 KKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA 185
K+K P RF N DE ++ I + + ++G F + G +KDGFL+K + S++
Sbjct: 407 KRKRTRPQARFFNPDEVEKMKIPLNQSTT-LSG-LFYILNGDKYKDGFLHKVFRVASVNI 464
Query: 186 QNIQPTFDELEKFRTPGE-----------NGESDIASLSTL-FANRKKGHFMKGDAVIVI 233
+ P+ +EL+KF+ GE N ++I+S+ L K HF KGD V VI
Sbjct: 465 DGVVPSLEELQKFQDRGEVQMDEEGQPIENISAEISSVPILPRLQTKSTHFAKGDTVKVI 524
Query: 234 KGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGAT 293
+GDLKNL VE V+E+ V I P + + A EL KYF+ G+HVK + G G T
Sbjct: 525 QGDLKNLMAIVESVEEDRVLILPIDEQIKDLFAFKPYELQKYFKVGDHVKAIGGRYEGET 584
Query: 294 GMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGV 353
GMVL+V+ +++LSD T +I+V D+ E +EV TG ++G+YEL DLV + + GV
Sbjct: 585 GMVLRVDDLQVVLLSDLTMSEIKVKPQDLQECTEVATGRLELGNYELHDLVQIGPHKVGV 644
Query: 354 IIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKS-NVQDRNKNTVAVKDVVRIVEGP 412
II+VE ++F+VL + V+ VKL+E+ K KS D + NT+ D++ +V+G
Sbjct: 645 IIKVERDSFKVLD---ESSNVSTVKLQEVGNKRRNKSFTTLDAHHNTITSGDLIEVVDGA 701
Query: 413 CKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSL 472
KGKQG + HI R LFI + E+ G ++ C ++GG++ N N +
Sbjct: 702 YKGKQGTILHISRNFLFIKSKDIFENGGVFVVRTQYCSLLGGNK-NKQSNIQQQQQQQQQ 760
Query: 473 RTPPRIPQSPGRYSXXXXXXXXXXXXXXXXH-DALVGTTVKVRLGPYKGYRGRVVDVKGQ 531
+ + GR D+ + V ++ G +KGY G V +
Sbjct: 761 QQQQQHSSQGGRGGGRGGYNNSGRGRGGRGREDSPLHKVVTIKKGSWKGYVGIVKECTDT 820
Query: 532 SVRVELESQMKVVTVDRSMIS-DNVVVSTPYRDTPRYGMGSETPMHPSRTPLH--PYMTP 588
V+VEL++ K + V ++ I+ N + T + + + SRTP+ P TP
Sbjct: 821 MVQVELQTNSKKINVLKTDIALPNERQQMQQQQTNDW----DQLYNASRTPMREDPSQTP 876
Query: 589 MRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYE 648
MR TP P R + Y S + G+ GS + G S ++
Sbjct: 877 MRMN--TPARSSHSDPWSMRESSDYFSSSSSSGS---GS-GSSSNNNSSSGGGRDSGSHN 930
Query: 649 APTPGSGWASTPGGNYS-----DAGTPRDSSSTYVNAPSPYLPSTPG-GQPMTPN-SASY 701
SG +TPG NYS TP D S+ +PY STP G PN + SY
Sbjct: 931 GNDYSSG--TTPGTNYSLYSPYTPNTPLDGSNRSDPNYTPYDRSTPSMGYGNDPNPTPSY 988
Query: 702 LXXXXXXXXXXXXXXXLDAMSPVIGADNEG------PWFMP----DILVRRSGEESVVGV 751
+ + +P +E P + +++ + SG+ +VV
Sbjct: 989 MSNYTPHEIPSSPYTPHNPQTPATPNSSEDHDEEVEPQYWSGTKIEVVFKDSGKHAVV-- 1046
Query: 752 IREVLPDGSCRV-VLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKL-IGV 809
+ L D + RV +L + D ++ +++ +VPP K D++ I+ G G +G L I
Sbjct: 1047 -LDNLSDSTVRVEMLDTKEVIDNVSQ--SQLNLVPPAKKDRVVIVKGKLCGQSGNLFILT 1103
Query: 810 DGTDGIVKVDVSLDVKILDMAILAKL 835
D GIVK++ + D K+ M+ + KL
Sbjct: 1104 DENTGIVKMNSNFDFKVFKMSYIGKL 1129
Score = 269 (99.8 bits), Expect = 1.2e-93, Sum P(2) = 1.2e-93
Identities = 44/111 (39%), Positives = 79/111 (71%)
Query: 13 IRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDL 72
I+SV+A HL Y+Y+EA++E HV++A KG+ ++ S ++ P++++ +V++ K +DL
Sbjct: 164 IKSVMAPHHLSGYVYVEAEREVHVRQAIKGMTSLVSFTPVITPLKDIIEVISANKKNVDL 223
Query: 73 SRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE 123
+ WVR+++G YK D+ +++ D + RVTVKLIPR+DL ++A L+ +E
Sbjct: 224 QKGGWVRIRLGKYKADIGQIISYDPSKSRVTVKLIPRLDLPSIAQSLQEKE 274
>FB|FBgn0040273 [details] [associations]
symbol:Spt5 "Spt5" species:7227 "Drosophila melanogaster"
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0005705 "polytene chromosome
interband" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0008023 "transcription elongation
factor complex" evidence=IPI] [GO:0035101 "FACT complex"
evidence=IPI] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 EMBL:AE013599 GO:GO:0007095 GO:GO:0007052
GO:GO:0045944 GO:GO:0000122 GO:GO:0046982 GO:GO:0006368
GO:GO:0032968 GO:GO:0005703 GO:GO:0005705 GO:GO:0032786
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
GO:GO:0032044 GO:GO:0032785 eggNOG:COG5164 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 GeneTree:ENSGT00440000037640
EMBL:AF222864 EMBL:AY069140 EMBL:BT001668 EMBL:BT023840
RefSeq:NP_652610.1 UniGene:Dm.2263 ProteinModelPortal:Q9V460
SMR:Q9V460 DIP:DIP-59538N IntAct:Q9V460 MINT:MINT-322311
STRING:Q9V460 PaxDb:Q9V460 PRIDE:Q9V460 EnsemblMetazoa:FBtr0086531
GeneID:53442 KEGG:dme:Dmel_CG7626 UCSC:CG7626-RA CTD:53442
FlyBase:FBgn0040273 InParanoid:Q9V460 OMA:VGQTGII OrthoDB:EOG4X0K78
PhylomeDB:Q9V460 GenomeRNAi:53442 NextBio:841174 Bgee:Q9V460
GermOnline:CG7626 Uniprot:Q9V460
Length = 1078
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 270/863 (31%), Positives = 423/863 (49%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY--SQKVMLVPIREMTDVLAVESK 68
LQI+S+IA + +K YIY+EA K+ HVK + N+ K +VPI+EMTDVL V +
Sbjct: 247 LQIKSIIAPEGVKGYIYLEAYKQTHVKTCIDNVGNLRMGKWKQEMVPIKEMTDVLKVVKE 306
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL-----EGRE 123
+ L WVR+K G YK D+A+V VD + +V +KL+PRID + L E +
Sbjct: 307 QVGLKVKQWVRLKRGLYKDDIAQVDYVDLAQNQVHLKLLPRIDYTRMRGALRTTATESDD 366
Query: 124 VAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSI 183
+KK P + + + R I E D GD+ G + GFLYK +M +I
Sbjct: 367 SKRKKKRRPAAKPFDPEAVRA--IGGEVHSD---GDFLLFEGNRYSRKGFLYKNFTMSAI 421
Query: 184 SAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGH-FMKGDAVIVIKGDLKNLKG 242
+ ++PT ELE+F E E ++ + T+ + H F GD V V GDL+NL+
Sbjct: 422 LSDGVKPTLAELERFEESPE--EVNLEIMGTVKDDPTMAHSFSMGDNVEVCVGDLENLQA 479
Query: 243 WVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQH 302
+ +D + + P+ + L L + EL KYF+ G+H +V++G G TG++++VE
Sbjct: 480 KIVAIDGTMITVMPKHQDLKDPLIFKASELRKYFKTGDHARVLAGRYEGETGLIIRVEPT 539
Query: 303 VLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAF 362
++++SD T ++ V D+ S+V TG+ +G ++ D+V LD+ + GVI+R+E E F
Sbjct: 540 RVVLVSDLTNHELEVLPRDLQLCSDVATGVDCLGQFQWGDMVQLDSQNVGVIVRLERENF 599
Query: 363 QVL----KGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQG 418
VL K + +P AL K +E + + D ++N + +DVV+++EGP G+ G
Sbjct: 600 HVLGMNGKCIECKP-TALHKRKE-----NRHTVALDADQNQIRRRDVVKVMEGPHAGRSG 653
Query: 419 PVEHIYRGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDAYSR-FNSLRTPP 476
++H+YR + F+H R + E+ G F+C K+ + GGS+ G F S R
Sbjct: 654 EIKHLYRSLAFLHCRMYTENGGIFVC-KTRHLQLAGGSKTTVSNAGIVGGLGFMSPRIQS 712
Query: 477 RIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVE 536
+ S GR + + L G T+K+ GPYKG G V D + RVE
Sbjct: 713 PMHPSGGRGARGGARGGRGGFRVTRDREIL-GKTIKISGGPYKGAVGIVKDATESTARVE 771
Query: 537 LESQMKVVTVDRSMISDNVV------VSTPYRDTPRY--GMGSETPMHP---SRTPLHPY 585
L + + ++VDR+ I+ V VST Y TP G G++TP + S+TPL
Sbjct: 772 LHTSCQTISVDRNHIAIVGVTGKEGSVST-YGRTPARTPGYGAQTPSYTAAGSKTPLVGS 830
Query: 586 MTPMRDAGA-------TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQ 638
TP D TP HDG TP R AW+P +P R+N D + SP Y
Sbjct: 831 QTPNWDTDTRTPYGTMTPSHDGSMTP-RHGAWDPTANTTPARNNDFDYSLEEPSPSPGYN 889
Query: 639 PGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNS 698
P +P Y+ + + TPG Y G+ R S S + +PSP P G TP+
Sbjct: 890 PSTP---GYQMTSQFA--PQTPGTLY---GSDR-SYSPFNPSPSPAPSPYPVGYMNTPSP 940
Query: 699 ASYLXXXXXXXXXXXXXXXLDAMSPVIGADNE-GPWFMPDILVRRSGEESV-----VGVI 752
++Y + +P D+ G W DI VR + G+I
Sbjct: 941 STY----SPNTPGGIPQSPYNPQTPGASLDSSMGDWCTTDIEVRIHTHDDTDLVGQTGII 996
Query: 753 REVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGT 812
R V +G C V L +++ + + V P D+ KI+ G R + G+++ DG
Sbjct: 997 RTV-SNGVCSVFLRQEDR--SVSIVSEHLAPVLPCNGDEFKIIYGDDRESVGRVLSKDGD 1053
Query: 813 DGIVKVDVSLDVKILDMAILAKL 835
+ +++ ++K+L + L K+
Sbjct: 1054 VFVCRINE--EIKLLPINFLCKM 1074
>TAIR|locus:2179979 [details] [associations]
symbol:KTF1 "AT5G04290" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006306 "DNA methylation"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR017071 EMBL:CP002688
GO:GO:0006357 GO:GO:0030422 GO:GO:0006306 GO:GO:0032784
InterPro:IPR005824 SMART:SM00739 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 IPI:IPI00544683
RefSeq:NP_196049.1 UniGene:At.54715 ProteinModelPortal:F4JW79
SMR:F4JW79 IntAct:F4JW79 PRIDE:F4JW79 EnsemblPlants:AT5G04290.1
GeneID:830308 KEGG:ath:AT5G04290 OMA:SSWGKKD Uniprot:F4JW79
Length = 1493
Score = 446 (162.1 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 94/215 (43%), Positives = 138/215 (64%)
Query: 8 GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVES 67
G++L+I SV ++DH+K +I+IEADKE V EACK L IY+ +++L+P E ++L V+
Sbjct: 176 GTKLEIISVFSVDHVKGFIFIEADKEHDVLEACKSLVGIYATRMVLLPKAETPNLLTVQK 235
Query: 68 KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKK 127
K +S TW R+K G YKGDLA++V V + R + +KLIPRID+QAL K G V +
Sbjct: 236 KTKKVSEGTWARVKNGKYKGDLAQIVAVSDTRNKALIKLIPRIDIQALTQKYGGG-VTVQ 294
Query: 128 KPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQN 187
K P PR ++ E E ++ RRD TG FE++ ++ KDG+LYK VS+ SIS+
Sbjct: 295 KGQTPAPRLISSSELEEFRPLIQVRRDRDTGITFEHLDSLMLKDGYLYKKVSLDSISSWG 354
Query: 188 IQPTFDELEKFRTPGENGES-DIASLSTLFANRKK 221
+ PT DEL KF TP + E+ D+ +S ++ +K
Sbjct: 355 VIPTKDELLKF-TPVDRKETGDVEWISEIYGEERK 388
Score = 302 (111.4 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 75/232 (32%), Positives = 120/232 (51%)
Query: 338 YELRDLVLLDNNSFGVIIRVES--EAFQVLKGVPDRPEVALVKLREIKC-KLEKKSNVQD 394
YEL +LV FG+I+ V+ + ++VLK D P V V +E++ + K D
Sbjct: 437 YELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVGKKEMQNGPFDSKFTALD 496
Query: 395 RNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSC--VVV 452
NK ++V DVV+I +GP +GKQG V +YRGI+F++D E+ G+ C KS SC V +
Sbjct: 497 LNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEENGGYFCCKSQSCEKVKL 556
Query: 453 GGSRANGDRNGDAYSRFNSLRTPPRIPQSPGR-YSXXXXXXXXXXXXXXXXHDALVGTTV 511
+N G + F + P+ P SP + + + +G +
Sbjct: 557 FTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGDIGSTYS--IGQKL 614
Query: 512 KVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----NVVVST 559
++R+GP KGY RV+ ++ V V+L+SQ K+ TV +++ N V+ST
Sbjct: 615 RIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRNTVLST 666
Score = 113 (44.8 bits), Expect = 6.0e-45, Sum P(3) = 6.0e-45
Identities = 61/268 (22%), Positives = 105/268 (39%)
Query: 441 FIC-AKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGR-YSXXXXXXXXXXXX 498
F C ++S V + +N G + F + P+ P SP + +
Sbjct: 544 FCCKSQSCEKVKLFTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGD 603
Query: 499 XXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD----N 554
+ +G +++R+GP KGY RV+ ++ V V+L+SQ K+ TV +++ N
Sbjct: 604 IGSTYS--IGQKLRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRN 661
Query: 555 VVVST----------PY------RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIH 598
V+ST P+ T + +G+ T + T ++ I
Sbjct: 662 TVLSTSGDAGTGSFQPFGMLGTESSTGDWAIGAGTSSEGGNWNIGGPSTDSHES--LNIE 719
Query: 599 DGMRTPMRDR-AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWA 657
M R++ W P S D N +W + + P+ A + P + W
Sbjct: 720 RNMVQLCREKNPWGGSKPTSDVSPTVADDNTSAWANAAAE---NKPASASDQPGGWNPWG 776
Query: 658 STPGGNYSDAGTPR---DSSSTYVNAPS 682
TP S+AGT D+S++ V A S
Sbjct: 777 KTPA---SEAGTVSGWGDTSASNVEASS 801
Score = 54 (24.1 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 118 KLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKT 177
K +G++VA + + N E R+ +R+++R++P +FE + + G +
Sbjct: 4 KGKGKQVAGSDSYSGGQKRKNSVEFRDEGLRIKKRKNPEVLQFFEESAEVGYYGGSSDED 63
Query: 178 VS-MKSISAQNIQPTFDELEKFRTPGENGES 207
+ ++ +P +E K GE G+S
Sbjct: 64 DDGLGFLNDMEDEPEVEESSK-AGKGEKGKS 93
Score = 53 (23.7 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 25/86 (29%), Positives = 31/86 (36%)
Query: 593 GATPIHDGMRTPMRDR--AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAP 650
G+ P D T D AW + P PG W +P G P A EA
Sbjct: 734 GSKPTSDVSPTVADDNTSAWANAAAENKPAS--ASDQPGGW--NPW---GKTP--ASEAG 784
Query: 651 TPGSGWASTPGGNYSDAGTPRDSSST 676
T SGW T N + + +ST
Sbjct: 785 TV-SGWGDTSASNVEASSWEKQGAST 809
Score = 47 (21.6 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 622 NW--EDGNPGS---WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG 662
+W +DG GS WG + GS + ++ GS W GG
Sbjct: 1252 SWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGG-GSSWGKQDGG 1296
Score = 47 (21.6 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 625 DGNPG--SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGT 669
DG+ G SWG GS + ++ GS W GG D+G+
Sbjct: 1172 DGSGGGSSWGKQNDAGGGSSWGKQ-DSGGDGSSWGKQDGGG--DSGS 1215
Score = 47 (21.6 bits), Expect = 6.0e-45, Sum P(3) = 6.0e-45
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 202 GENGESDIASLSTLFANRKKGHFMKGDAVIVI----KGD-LKNLKGWVEKVDEENVHIRP 256
GE G SD S S+ + F + D +++ KGD K LK ++ V +
Sbjct: 425 GE-GSSDFKSESS-YELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVG-KK 481
Query: 257 EMKGLPKTLAVNSKELCK-YFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKED 314
EM+ P + +L K + VK+ G G G+V +V + ++ + ++ +E+
Sbjct: 482 EMQNGPFDSKFTALDLNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEEN 540
Score = 46 (21.3 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 16/53 (30%), Positives = 18/53 (33%)
Query: 624 EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWAS-TPGGNYSDAGTPRDSSS 675
E N SWG GS + + GS W GG S G D S
Sbjct: 1271 ETSNGSSWGKQNDSGGGSSWGKQ-DGGGGGSSWGKQNDGGGGSSWGKQGDGGS 1322
Score = 45 (20.9 bits), Expect = 1.7e-64, Sum P(3) = 1.7e-64
Identities = 16/53 (30%), Positives = 19/53 (35%)
Query: 623 WEDGNPGS-WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSS 674
W + GS WG GS + +A GS W G S G D S
Sbjct: 1123 WSKPSGGSSWGKQDGDGGGSSWGKENDAGG-GSSWGKQDNGVGSSWGKQNDGS 1174
Score = 45 (20.9 bits), Expect = 1.7e-64, Sum P(3) = 1.7e-64
Identities = 19/71 (26%), Positives = 25/71 (35%)
Query: 609 AWNPYTPMSPPRDNW----EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWA---STPG 661
+W S +W + G SWG GS + GS W +T G
Sbjct: 1166 SWGKQNDGSGGGSSWGKQNDAGGGSSWGKQDSGGDGSSWGKQDGGGDSGSAWGKQNNTSG 1225
Query: 662 GN----YSDAG 668
G+ SDAG
Sbjct: 1226 GSSWGKQSDAG 1236
Score = 43 (20.2 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 622 NWEDGNPGS-WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGT 669
+W N GS WG + G + ++ G W GN D G+
Sbjct: 934 DWGQPNDGSSWG-----KKGDGAA-SWGKKDDGGSWGKKDDGNKDDGGS 976
Score = 43 (20.2 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 620 RDNWEDGNPGSWGTSPQYQPGSPPSRAYE-APTPGSGWASTPGGNYSDAG 668
RD + G S+G S P S PS G G S+ G +DAG
Sbjct: 1105 RDQF--GRGSSFGNSEDPAPWSKPSGGSSWGKQDGDGGGSS-WGKENDAG 1151
Score = 43 (20.2 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 16/56 (28%), Positives = 19/56 (33%)
Query: 622 NWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTY 677
N +DG SWG Q S + GS W G S G D S +
Sbjct: 970 NKDDGG-SSWGKKDDGQKDDGGSSWEKKFDGGSSWGKKDDGG-SSWGKKDDGGSLW 1023
Score = 43 (20.2 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 791 KIKIMGGPHRGATGKLIGVDGTDGIVKVD 819
K++I GP +G ++I + +D VK+D
Sbjct: 613 KLRIRVGPLKGYLCRVIALRYSDVTVKLD 641
Score = 39 (18.8 bits), Expect = 7.2e-64, Sum P(3) = 7.2e-64
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 656 WA-STPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQP 693
W S P + S D++S + NA + P++ QP
Sbjct: 732 WGGSKPTSDVSPT-VADDNTSAWANAAAENKPASASDQP 769
Score = 39 (18.8 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 751 VIREVLPDGSCRVVLGSSG--NG--DT-ITALP-NEIEIVPPRKTDKIKIMGGPHRGATG 804
V++E + DG V +G NG D+ TAL N+ +I D +KI GP G G
Sbjct: 465 VLKEGI-DGPVVVTVGKKEMQNGPFDSKFTALDLNKKQI---SVNDVVKISKGPSEGKQG 520
Score = 37 (18.1 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 391 NVQDRNKNTVAVKDVVRIVEGPCKGKQG 418
+ +D N N+ V D + +G GK+G
Sbjct: 921 SAEDSNANSKGVPDWGQPNDGSSWGKKG 948
>WB|WBGene00005015 [details] [associations]
symbol:spt-5 species:6239 "Caenorhabditis elegans"
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 668 (240.2 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 225/734 (30%), Positives = 352/734 (47%)
Query: 1 MQKC--IDKGSE-LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIR 57
M+KC ++ +E QI+SV+ + LK IYIEA K++HV A +G + + +VPI+
Sbjct: 203 MRKCLAVEHTNEPFQIKSVVVKEGLKGMIYIEAFKQSHVMSAIEGFSALNQFTITMVPIK 262
Query: 58 EMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVD-VDNVRQRVTVKLIPRIDLQ--- 113
+M DVL V L ++VR+K YK DLA VVD VD + RV +KLIPR+D Q
Sbjct: 263 DMVDVLRVVKDIPQLKLGSYVRLKRTMYKDDLA-VVDLVDIAQNRVNLKLIPRVDYQKRR 321
Query: 114 -ALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDG 172
A+ + K++P P+ + D +E+ + D + FE G F+ G
Sbjct: 322 GAMRTDADKNYKLKRRPM---PKLFDQDTIKEVGGEIVTDGDFLV---FE---GNHFRRG 372
Query: 173 FLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIV 232
FLYK + +I A ++PT ELEKF+ E+ + L T + F+ GD V V
Sbjct: 373 FLYKYFPINAIQADGVKPTLGELEKFQ---ESSDDLKRELETASLKDTENPFVPGDIVEV 429
Query: 233 IKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGA 292
G+L NL+G V VD V + P+ + L + + +N+ EL KYF+ G+H KV+SG G
Sbjct: 430 KAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHAKVISGRYEGH 489
Query: 293 TGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNN-SF 351
TG++++V+ I+LSD E+++V D+ ++VTTG+ +G ++ DLV LD+ +
Sbjct: 490 TGLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHDLVQLDHTGNV 549
Query: 352 GVIIRVESEAFQVLK--GVPDRPEVALVKLREIKCKLEKK-SNVQDRNKNTVAVKDVVRI 408
GVI+R+E E +VL GV +R +K + I K + + + V D N++ KD+V++
Sbjct: 550 GVIVRLEKEHLEVLNMHGVVNR-----IKPQAIIAKKDVRFAKVLDSQNNSIEAKDLVKV 604
Query: 409 VEGP-CKGKQ------GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANG-- 459
+ GP K ++ G V + +RG +F++ R ++ G + K ++ G +
Sbjct: 605 IGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGAKKTTSTP 664
Query: 460 --DR----NGDAYSRFNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVKV 513
R N A R +S PR PQ G S GT +
Sbjct: 665 MVSRMASPNPMASPRHSSGGMTPRSPQD-GMSSRGSSGGQTPRQGGGGGRGGHFGTANQQ 723
Query: 514 RLGPYKGYRGRVVDVKGQSVRVELESQMKV-VTVDRSMISDNVVVS--TPYR----DTPR 566
++ R + + G++VR+ ++ MK + R D V V T R D R
Sbjct: 724 KVR-------RDLTLIGKNVRI-IKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRAR 775
Query: 567 YGMGSETPMHPSRTPLHPYM----TPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDN 622
+ +T + + TPMRD+G TP++ G +TPM Y M+P D
Sbjct: 776 VMVVGDTGITAGSGGGSSFYSSSKTPMRDSGKTPMY-GSKTPMYGAQTPMYGSMTPAYDG 834
Query: 623 WEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPS 682
G G +P Y +P AY S + TP + TP S+ A +
Sbjct: 835 GRTPAYGEGGRTPAYGSKTP---AYGDLDEHSS-SRTPAYGNDSSRTPAYGSAD--GART 888
Query: 683 PYLPSTPGGQPMTP 696
P ST GG+ TP
Sbjct: 889 PAYGSTEGGR--TP 900
Score = 132 (51.5 bits), Expect = 0.00015, P = 0.00015
Identities = 68/305 (22%), Positives = 127/305 (41%)
Query: 558 STPYRDTPRYGMGSETPMHP-----SRTPLH--PY---MTPMRDAGATPIHDGMRTPMRD 607
S P R TP Y S+TP +P +RTP + Y ++P + A +D P R
Sbjct: 924 SMPSR-TPNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSPAYEPDAPEAYDN--APART 980
Query: 608 RAWNPYTPMSPPRDNWEDGNPG---SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNY 664
A + +P D +E+ +P T + G S Y++P P S TPG
Sbjct: 981 PA---FVSRTPGYDTYENSSPTYEPDAATKVEEDIGDTSSPTYDSP-PHSYVVPTPGAML 1036
Query: 665 SDAGTPRDSSSTYVNAPSPYLPSTPG-GQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSP 723
+ A TP + +V+ P P TPG G A ++ +
Sbjct: 1037 NPA-TP---GAYHVDTPGFAAPMTPGSGGAYDQYVAPSPFAGYDSNNYNNADGAIEQIPD 1092
Query: 724 VIGADNEGPWFMPDILV-------RRSGEESVV-----GVIREVLPDGSCRVVLGSSGNG 771
A +G W + ++ V R +G E+++ G + +PD C + + +
Sbjct: 1093 HFLA--QGVWIVQNLCVQIKDHEGRFNGREAIIKDVTDGKVDVYMPDHKCNLEV----DF 1146
Query: 772 DTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVKILDMA 830
D +T + P+ D +++ G G +G+L+ +DG + +++ + D++++++
Sbjct: 1147 DQLTPMK-------PQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIG 1199
Query: 831 ILAKL 835
+ K+
Sbjct: 1200 LCCKM 1204
>UNIPROTKB|Q21338 [details] [associations]
symbol:spt-5 "Transcription elongation factor SPT5"
species:6239 "Caenorhabditis elegans" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 668 (240.2 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 225/734 (30%), Positives = 352/734 (47%)
Query: 1 MQKC--IDKGSE-LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIR 57
M+KC ++ +E QI+SV+ + LK IYIEA K++HV A +G + + +VPI+
Sbjct: 203 MRKCLAVEHTNEPFQIKSVVVKEGLKGMIYIEAFKQSHVMSAIEGFSALNQFTITMVPIK 262
Query: 58 EMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVD-VDNVRQRVTVKLIPRIDLQ--- 113
+M DVL V L ++VR+K YK DLA VVD VD + RV +KLIPR+D Q
Sbjct: 263 DMVDVLRVVKDIPQLKLGSYVRLKRTMYKDDLA-VVDLVDIAQNRVNLKLIPRVDYQKRR 321
Query: 114 -ALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDG 172
A+ + K++P P+ + D +E+ + D + FE G F+ G
Sbjct: 322 GAMRTDADKNYKLKRRPM---PKLFDQDTIKEVGGEIVTDGDFLV---FE---GNHFRRG 372
Query: 173 FLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIV 232
FLYK + +I A ++PT ELEKF+ E+ + L T + F+ GD V V
Sbjct: 373 FLYKYFPINAIQADGVKPTLGELEKFQ---ESSDDLKRELETASLKDTENPFVPGDIVEV 429
Query: 233 IKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGA 292
G+L NL+G V VD V + P+ + L + + +N+ EL KYF+ G+H KV+SG G
Sbjct: 430 KAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHAKVISGRYEGH 489
Query: 293 TGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNN-SF 351
TG++++V+ I+LSD E+++V D+ ++VTTG+ +G ++ DLV LD+ +
Sbjct: 490 TGLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHDLVQLDHTGNV 549
Query: 352 GVIIRVESEAFQVLK--GVPDRPEVALVKLREIKCKLEKK-SNVQDRNKNTVAVKDVVRI 408
GVI+R+E E +VL GV +R +K + I K + + + V D N++ KD+V++
Sbjct: 550 GVIVRLEKEHLEVLNMHGVVNR-----IKPQAIIAKKDVRFAKVLDSQNNSIEAKDLVKV 604
Query: 409 VEGP-CKGKQ------GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANG-- 459
+ GP K ++ G V + +RG +F++ R ++ G + K ++ G +
Sbjct: 605 IGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGAKKTTSTP 664
Query: 460 --DR----NGDAYSRFNSLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVKV 513
R N A R +S PR PQ G S GT +
Sbjct: 665 MVSRMASPNPMASPRHSSGGMTPRSPQD-GMSSRGSSGGQTPRQGGGGGRGGHFGTANQQ 723
Query: 514 RLGPYKGYRGRVVDVKGQSVRVELESQMKV-VTVDRSMISDNVVVS--TPYR----DTPR 566
++ R + + G++VR+ ++ MK + R D V V T R D R
Sbjct: 724 KVR-------RDLTLIGKNVRI-IKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRAR 775
Query: 567 YGMGSETPMHPSRTPLHPYM----TPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDN 622
+ +T + + TPMRD+G TP++ G +TPM Y M+P D
Sbjct: 776 VMVVGDTGITAGSGGGSSFYSSSKTPMRDSGKTPMY-GSKTPMYGAQTPMYGSMTPAYDG 834
Query: 623 WEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPS 682
G G +P Y +P AY S + TP + TP S+ A +
Sbjct: 835 GRTPAYGEGGRTPAYGSKTP---AYGDLDEHSS-SRTPAYGNDSSRTPAYGSAD--GART 888
Query: 683 PYLPSTPGGQPMTP 696
P ST GG+ TP
Sbjct: 889 PAYGSTEGGR--TP 900
Score = 132 (51.5 bits), Expect = 0.00015, P = 0.00015
Identities = 68/305 (22%), Positives = 127/305 (41%)
Query: 558 STPYRDTPRYGMGSETPMHP-----SRTPLH--PY---MTPMRDAGATPIHDGMRTPMRD 607
S P R TP Y S+TP +P +RTP + Y ++P + A +D P R
Sbjct: 924 SMPSR-TPNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSPAYEPDAPEAYDN--APART 980
Query: 608 RAWNPYTPMSPPRDNWEDGNPG---SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNY 664
A + +P D +E+ +P T + G S Y++P P S TPG
Sbjct: 981 PA---FVSRTPGYDTYENSSPTYEPDAATKVEEDIGDTSSPTYDSP-PHSYVVPTPGAML 1036
Query: 665 SDAGTPRDSSSTYVNAPSPYLPSTPG-GQPMTPNSASYLXXXXXXXXXXXXXXXLDAMSP 723
+ A TP + +V+ P P TPG G A ++ +
Sbjct: 1037 NPA-TP---GAYHVDTPGFAAPMTPGSGGAYDQYVAPSPFAGYDSNNYNNADGAIEQIPD 1092
Query: 724 VIGADNEGPWFMPDILV-------RRSGEESVV-----GVIREVLPDGSCRVVLGSSGNG 771
A +G W + ++ V R +G E+++ G + +PD C + + +
Sbjct: 1093 HFLA--QGVWIVQNLCVQIKDHEGRFNGREAIIKDVTDGKVDVYMPDHKCNLEV----DF 1146
Query: 772 DTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVKILDMA 830
D +T + P+ D +++ G G +G+L+ +DG + +++ + D++++++
Sbjct: 1147 DQLTPMK-------PQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIG 1199
Query: 831 ILAKL 835
+ K+
Sbjct: 1200 LCCKM 1204
>UNIPROTKB|H9L0H1 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0032044 "DSIF complex" evidence=IEA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM01104 Pfam:PF00467 GO:GO:0006357
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 InterPro:IPR022581
Pfam:PF11942 GeneTree:ENSGT00440000037640 EMBL:AADN02036678
EMBL:AADN02036679 EMBL:AADN02036680 Ensembl:ENSGALT00000023124
Uniprot:H9L0H1
Length = 962
Score = 401 (146.2 bits), Expect = 3.2e-58, Sum P(2) = 3.2e-58
Identities = 113/349 (32%), Positives = 167/349 (47%)
Query: 373 EVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIH 431
+V V+ + + K + + V D +N + VKD+V++++GP G++G + H++RG F+H
Sbjct: 446 KVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLH 505
Query: 432 DRHHLEHAG-FICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI--PQSPGRYSXX 488
+ +E+ G F+C K+ V+ GGS+ N S F + PRI P P
Sbjct: 506 CKKLVENGGMFVC-KTRHLVLAGGSKPRDVTNFTVGS-FAPMS--PRISSPMHPSGAGQR 561
Query: 489 XXXXXXXXXXXXXXHDA-LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVD 547
D L+G TV++ GPYKGY G V D + RVEL S + ++VD
Sbjct: 562 GGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVD 621
Query: 548 RSMISD----------NVVVSTP-Y-RDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGAT 595
R ++ + TP Y TP YG GS TPM+ S+TPLH T
Sbjct: 622 RQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGDRTPHYGSQT 681
Query: 596 PIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG 653
P+HDG RTP + AW+P P +P R +++E G SPQ G+P + P P
Sbjct: 682 PLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPS 741
Query: 654 SGWASTPGGNYSDAGTPRDSSSTYVNAPSPY-LPSTPGGQPMTPNSASY 701
S + P N GTP ++ SPY +PS G +P+ SY
Sbjct: 742 SPQVTQPY-NPQTPGTPAMYNTDQF---SPYAVPSPQGSYQPSPSPQSY 786
Score = 281 (104.0 bits), Expect = 3.2e-58, Sum P(2) = 3.2e-58
Identities = 66/192 (34%), Positives = 110/192 (57%)
Query: 53 LVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL 112
+VPI+EMTDVL V + +L +WVR+K G YK D+A+V V+ + ++++K+IPRID
Sbjct: 229 MVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDF 288
Query: 113 QALANKLEGRE-VAKKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFK 170
+ ++ ++ AK+K F PP R + ++ R L V GD+ G +
Sbjct: 289 DRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSR 343
Query: 171 DGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAV 230
GFL+K+ +M ++ + ++PT ELEKF E + ++ + ST ++ +F GD V
Sbjct: 344 KGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNV 401
Query: 231 IVIKGDLKNLKG 242
V +G+L NL+G
Sbjct: 402 EVCEGELINLQG 413
Score = 214 (80.4 bits), Expect = 7.4e-38, Sum P(2) = 7.4e-38
Identities = 81/255 (31%), Positives = 123/255 (48%)
Query: 595 TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPGSPPSRAYEAPTP 652
TP + +P + +NP TP +P N + +P + SPQ YQP SP ++Y P
Sbjct: 734 TPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAV-PSPQGSYQP-SPSPQSYHQVAP 791
Query: 653 GS-GWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLXXXXXXXX 710
G+ +T +S A P S Y +PSP S G PMTP + S
Sbjct: 792 SPVGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS---------- 834
Query: 711 XXXXXXXLDAMSPVIGAD-NEGPWFMPDILVR-RS---GEESV--VGVIREVLPDGSCRV 763
+ +P G + + W DI V+ R ++V GVIR V G C V
Sbjct: 835 ----PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSV 889
Query: 764 VLGSSGNGDTITALPNE-IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSL 822
L S + + ++ +E +E V P K++K+K++ G R ATG L+ +DG DGIV++D+
Sbjct: 890 YLKDS---EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDE 946
Query: 823 DVKILDMAILAKLAQ 837
+KIL++ L KL +
Sbjct: 947 QLKILNLRFLGKLLE 961
Score = 69 (29.3 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 33/112 (29%), Positives = 47/112 (41%)
Query: 189 QPTFDELEKFRTPGENGESDIASLSTLFANR--KKGHFMKGDAV-IVIKGDLKNLKGWVE 245
Q FD EK R+ G + SD NR +KG K A+ VI +K +E
Sbjct: 312 QRLFDA-EKIRSLGGDVASD-GDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELE 369
Query: 246 KVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVL 297
K +++ PE L KE F+PG++V+V G G +L
Sbjct: 370 KFEDQ-----PEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKIL 416
Score = 55 (24.4 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 258 MKGLPKTLAVNSKELCKYFEP--GNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKE 313
+K K ++++S+ L + P N VKV+ G ATG++L ++ I+ D ++
Sbjct: 891 LKDSEKVVSISSEHL-EPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQ 947
Score = 52 (23.4 bits), Expect = 6.7e-21, Sum P(2) = 6.7e-21
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 511 VKVRLGPYKGYRGRVVDVKGQS--VRVELESQMKVVTV 546
VKV LG + G ++ + G+ VR++L+ Q+K++ +
Sbjct: 916 VKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNL 953
Score = 47 (21.6 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 790 DKIKIMGGPHRGATGKL 806
D +K++ GPH G G++
Sbjct: 478 DIVKVIDGPHSGREGEI 494
Score = 40 (19.1 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRV 102
DL T VR+ G YKG + V D RV
Sbjct: 579 DLIGQT-VRISQGPYKGYIGVVKDATESTARV 609
>CGD|CAL0004616 [details] [associations]
symbol:SPT5 species:5476 "Candida albicans" [GO:2001208
"negative regulation of transcription elongation from RNA
polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0090262 "regulation of
transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:2000232 "regulation of rRNA processing" evidence=IEA]
[GO:2001209 "positive regulation of transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IEA]
[GO:0001042 "RNA polymerase I core binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0001179 "RNA polymerase I transcription factor binding"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0032044
"DSIF complex" evidence=IEA] [GO:0033553 "rDNA heterochromatin"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0009267 "cellular response
to starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR017071 PIRSF:PIRSF036945 CGD:CAL0004616 Pfam:PF00467
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0006397
GO:GO:0006357 GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008
EMBL:AACQ01000007 GO:GO:0036170 InterPro:IPR008991 SUPFAM:SSF50104
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 eggNOG:COG5164
KO:K15172 InterPro:IPR022581 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942 RefSeq:XP_722364.1
RefSeq:XP_722503.1 ProteinModelPortal:Q5ALX3 STRING:Q5ALX3
GeneID:3635847 GeneID:3635993 KEGG:cal:CaO19.1453
KEGG:cal:CaO19.9028 Uniprot:Q5ALX3
Length = 956
Score = 534 (193.0 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 190/694 (27%), Positives = 324/694 (46%)
Query: 7 KGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-V 65
+G+ L I +V D YIYIEA + + +A G+ N++ + +LVP++E D+L V
Sbjct: 241 QGNPLDILTVFQRDAFTGYIYIEAKRPDAIDKALVGMVNVFVRDKLLVPVKEYPDLLKQV 300
Query: 66 ESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVA 125
+S +++ +VR+K G Y+GDLA V ++ V +++PR+D +V
Sbjct: 301 KSSDVEIRPGIYVRIKRGIYRGDLAIVDNLSENGLDVRCQVVPRLDYGQNDEIGPDGKVI 360
Query: 126 KKKPFVPPPRFMNVDEARELH-IRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS 184
K K P P + +AR +++ R P + Y G + DG+LYK ++ I
Sbjct: 361 KSK-IKPLPALFSEQKARMYDPYKLQMGRVPNSFIY----RGNEYYDGYLYKDFKLQFIQ 415
Query: 185 AQNIQPTFDELEKFRTPG-ENGESDIASLSTLFANRK-KGH----FMKGDAVIVIKGDLK 238
+++ PT +EL++F+ E+G + A +TL N +G F GD V + +G+
Sbjct: 416 TKDVNPTLEELDRFQNQNDEDGLNLQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQA 475
Query: 239 NLKGWVEKVDEENVHIRPEMKGLPK----TLAVNSKELCKYFEPGNHVKVVSGTQAGATG 294
G V + + I+ G P+ L V + +L K F G+HV++V G TG
Sbjct: 476 KTIGIVVETALNEITIKVTDSGDPRFVDQRLTVPANDLRKIFYEGDHVRIVEGKHFDETG 535
Query: 295 MVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGD-YELRDLVLLDNNSFGV 353
+V+K++ ++I+SD TKED+RVFA+ +V++++ ++ + Y+++DLV L + GV
Sbjct: 536 LVIKIDGDSVVIVSDQTKEDVRVFANYLVKATDASSNFDLLNSKYDIKDLVELSGLTVGV 595
Query: 354 IIRVESEAFQVLKGVPDRPEVALVKLRE--IKCKLEKKSNVQ---DRNKNTVAVKDVVRI 408
II+ E F VL + L+ +R+ I KL++ Q DRN T+ V D V+
Sbjct: 596 IIKAEKNIFDVLT-----TDGRLISVRQSGIASKLKQSRREQVATDRNGTTIRVGDTVKE 650
Query: 409 VEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRN-GDAYS 467
+ G K ++G + HIY+ LFI +E+ G A + V + ++ G +
Sbjct: 651 LLGE-KSREGAILHIYKNALFIKSNEIVENLGIFVANRMNVTTVATKDSTVSKSLGPDLT 709
Query: 468 RFN-SLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVV 526
N +LR P +P D L+ V V G YKG +G+V
Sbjct: 710 SMNPNLRLP-----NP--------VAVAGLKTRVGGRDKLLYKDVAVTSGSYKGLKGKVT 756
Query: 527 DVKGQSVRVELESQMKVVTVDRSMISDNVVVS---TPYRD----TPRYGMGSETPMHPS- 578
+ R+EL ++ K + V ++ + NV+V PY P + + P + S
Sbjct: 757 EADDLYARIELHTKSKKIKVLKNNL--NVIVHGQPVPYLRFIGAAPEFSQPTP-PTYGSS 813
Query: 579 ---RTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSP 635
R+ + MTP AG + G+ R P + G +WG +
Sbjct: 814 SGGRSAWNGGMTPSVSAG----NGGVSAWGGSRGGFGGDGGKTPA--YGAGGASTWGGAS 867
Query: 636 QYQPGSPPSRAYEA-PTPGSGWASTPGGNYSDAG 668
+ G+ S A+ GS W + GG+ + +G
Sbjct: 868 AWGGGAGGSSAWGGIKGAGSVWDRSKGGSSASSG 901
Score = 42 (19.8 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 623 WEDGNPGSWGT 633
WE GN +WG+
Sbjct: 935 WEGGNNTTWGS 945
>UNIPROTKB|Q5ALX3 [details] [associations]
symbol:SPT5 "Transcription elongation factor SPT5"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR017071 PIRSF:PIRSF036945 CGD:CAL0004616 Pfam:PF00467
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0006397
GO:GO:0006357 GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008
EMBL:AACQ01000007 GO:GO:0036170 InterPro:IPR008991 SUPFAM:SSF50104
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 eggNOG:COG5164
KO:K15172 InterPro:IPR022581 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942 RefSeq:XP_722364.1
RefSeq:XP_722503.1 ProteinModelPortal:Q5ALX3 STRING:Q5ALX3
GeneID:3635847 GeneID:3635993 KEGG:cal:CaO19.1453
KEGG:cal:CaO19.9028 Uniprot:Q5ALX3
Length = 956
Score = 534 (193.0 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 190/694 (27%), Positives = 324/694 (46%)
Query: 7 KGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-V 65
+G+ L I +V D YIYIEA + + +A G+ N++ + +LVP++E D+L V
Sbjct: 241 QGNPLDILTVFQRDAFTGYIYIEAKRPDAIDKALVGMVNVFVRDKLLVPVKEYPDLLKQV 300
Query: 66 ESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVA 125
+S +++ +VR+K G Y+GDLA V ++ V +++PR+D +V
Sbjct: 301 KSSDVEIRPGIYVRIKRGIYRGDLAIVDNLSENGLDVRCQVVPRLDYGQNDEIGPDGKVI 360
Query: 126 KKKPFVPPPRFMNVDEARELH-IRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS 184
K K P P + +AR +++ R P + Y G + DG+LYK ++ I
Sbjct: 361 KSK-IKPLPALFSEQKARMYDPYKLQMGRVPNSFIY----RGNEYYDGYLYKDFKLQFIQ 415
Query: 185 AQNIQPTFDELEKFRTPG-ENGESDIASLSTLFANRK-KGH----FMKGDAVIVIKGDLK 238
+++ PT +EL++F+ E+G + A +TL N +G F GD V + +G+
Sbjct: 416 TKDVNPTLEELDRFQNQNDEDGLNLQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQA 475
Query: 239 NLKGWVEKVDEENVHIRPEMKGLPK----TLAVNSKELCKYFEPGNHVKVVSGTQAGATG 294
G V + + I+ G P+ L V + +L K F G+HV++V G TG
Sbjct: 476 KTIGIVVETALNEITIKVTDSGDPRFVDQRLTVPANDLRKIFYEGDHVRIVEGKHFDETG 535
Query: 295 MVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGD-YELRDLVLLDNNSFGV 353
+V+K++ ++I+SD TKED+RVFA+ +V++++ ++ + Y+++DLV L + GV
Sbjct: 536 LVIKIDGDSVVIVSDQTKEDVRVFANYLVKATDASSNFDLLNSKYDIKDLVELSGLTVGV 595
Query: 354 IIRVESEAFQVLKGVPDRPEVALVKLRE--IKCKLEKKSNVQ---DRNKNTVAVKDVVRI 408
II+ E F VL + L+ +R+ I KL++ Q DRN T+ V D V+
Sbjct: 596 IIKAEKNIFDVLT-----TDGRLISVRQSGIASKLKQSRREQVATDRNGTTIRVGDTVKE 650
Query: 409 VEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRN-GDAYS 467
+ G K ++G + HIY+ LFI +E+ G A + V + ++ G +
Sbjct: 651 LLGE-KSREGAILHIYKNALFIKSNEIVENLGIFVANRMNVTTVATKDSTVSKSLGPDLT 709
Query: 468 RFN-SLRTPPRIPQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVV 526
N +LR P +P D L+ V V G YKG +G+V
Sbjct: 710 SMNPNLRLP-----NP--------VAVAGLKTRVGGRDKLLYKDVAVTSGSYKGLKGKVT 756
Query: 527 DVKGQSVRVELESQMKVVTVDRSMISDNVVVS---TPYRD----TPRYGMGSETPMHPS- 578
+ R+EL ++ K + V ++ + NV+V PY P + + P + S
Sbjct: 757 EADDLYARIELHTKSKKIKVLKNNL--NVIVHGQPVPYLRFIGAAPEFSQPTP-PTYGSS 813
Query: 579 ---RTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSP 635
R+ + MTP AG + G+ R P + G +WG +
Sbjct: 814 SGGRSAWNGGMTPSVSAG----NGGVSAWGGSRGGFGGDGGKTPA--YGAGGASTWGGAS 867
Query: 636 QYQPGSPPSRAYEA-PTPGSGWASTPGGNYSDAG 668
+ G+ S A+ GS W + GG+ + +G
Sbjct: 868 AWGGGAGGSSAWGGIKGAGSVWDRSKGGSSASSG 901
Score = 42 (19.8 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 623 WEDGNPGSWGT 633
WE GN +WG+
Sbjct: 935 WEGGNNTTWGS 945
>SGD|S000004470 [details] [associations]
symbol:SPT5 "Component of the universally conserved Spt4/5
complex (DSIF complex)" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0032044 "DSIF complex"
evidence=IPI] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IGI;IMP;IPI] [GO:0000993
"RNA polymerase II core binding" evidence=IPI] [GO:0033553 "rDNA
heterochromatin" evidence=IDA] [GO:2000232 "regulation of rRNA
processing" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP] [GO:0090262 "regulation of
transcription-coupled nucleotide-excision repair" evidence=IGI]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:2001208 "negative regulation of transcription elongation from
RNA polymerase I promoter" evidence=IGI] [GO:0001179 "RNA
polymerase I transcription factor binding" evidence=IPI]
[GO:0001042 "RNA polymerase I core binding" evidence=IPI]
[GO:0019843 "rRNA binding" evidence=IDA] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IMP] [GO:0001181 "core RNA polymerase I binding
transcription factor activity" evidence=IC] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IGI;IPI]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 SGD:S000004470
Pfam:PF00467 GO:GO:0005739 EMBL:BK006946 GO:GO:0019843
GO:GO:0008298 GO:GO:0000398 GO:GO:0000991 GO:GO:0032968
GO:GO:0006370 GO:GO:2001209 GO:GO:0090262 InterPro:IPR008991
SUPFAM:SSF50104 EMBL:Z49810 InterPro:IPR005824 SMART:SM00739
GO:GO:0001181 GO:GO:2000232 GO:GO:0032044 PDB:2EXU PDBsum:2EXU
GO:GO:2001208 eggNOG:COG5164 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 HOGENOM:HOG000189404 OMA:GGASTWG
OrthoDB:EOG4HTD1J EMBL:M62882 PIR:A40253 RefSeq:NP_013703.1
ProteinModelPortal:P27692 SMR:P27692 DIP:DIP-6621N IntAct:P27692
MINT:MINT-631921 STRING:P27692 PaxDb:P27692 PeptideAtlas:P27692
PRIDE:P27692 EnsemblFungi:YML010W GeneID:854999 KEGG:sce:YML010W
CYGD:YML010w EvolutionaryTrace:P27692 NextBio:978151
Genevestigator:P27692 GermOnline:YML010W Uniprot:P27692
Length = 1063
Score = 519 (187.8 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 190/693 (27%), Positives = 313/693 (45%)
Query: 10 ELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAV-ESK 68
+L+I S+ D+ IYIEA K++ +++ C G+ +IY + +L+P++E+ +L +S
Sbjct: 319 KLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPNKSD 378
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKK- 127
+ L ++VR+K G YKGDLA V + V +K++PR+D ++++ +K
Sbjct: 379 DVALEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKF-DEIDPTTQQRKS 437
Query: 128 -KP-FV--PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSI 183
+P F PP+ N A L +RD Y +N + DG+LYK+ ++ +
Sbjct: 438 RRPTFAHRAPPQLFNPTMALRLDQANLYKRDDRHFTY-KNED---YIDGYLYKSFRIQHV 493
Query: 184 SAQNIQPTFDELEKFRTPGENGESDIASLSTLF--ANRKKGHFMKGDAVIVIKGDLKNLK 241
+NIQPT +EL +F + + G D+ S+S A K F GD + V+ G+ + K
Sbjct: 494 ETKNIQPTVEELARFGS--KEGAVDLTSVSQSIKKAQAAKVTFQPGDRIEVLNGEQRGSK 551
Query: 242 GWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQ 301
G V + ++ I+ + G L L K FEPG+HV V++G G G+VL VEQ
Sbjct: 552 GIVTRTTKDIATIK--LNGFTTPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLVLMVEQ 609
Query: 302 HVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEA 361
+ +S T ++ + A+++ +S + T T +Y L D+V L + II+ +
Sbjct: 610 GQVTFMSTQTSREVTITANNLSKSIDTTA--TS-SEYALHDIVELSAKNVACIIQAGHDI 666
Query: 362 FQVLKGVPDRPEVALVKLREIKCKLEK-KSNVQ--DRNKNTVAVKDVVRIVEGPCKGKQG 418
F+V + + +V+ + I K+ ++ V D N N + + D IVE ++G
Sbjct: 667 FKV---IDETGKVSTITKGSILSKINTARARVSSVDANGNEIKIGDT--IVEKVGSRREG 721
Query: 419 PVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI 478
V +I +F+ + +E+AG S+ V S+ N N S+ N P I
Sbjct: 722 QVLYIQTQQIFVVSKKIVENAGVFVVNPSNVEAVA-SKDNMLSNKMDLSKMN-----PEI 775
Query: 479 PQSPGRYSXXXXXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
G S + +G TV++R YKG G V DV G VEL
Sbjct: 776 ISKMGPPSSKTFQQPIQSRGG---REVALGKTVRIRSAGYKGQLGIVKDVNGDKATVELH 832
Query: 539 SQMKVVTVDRSMIS---DNVVVSTPYRD-TPRYGMGSETPMHPSRTPLHPYM-TPMRDAG 593
S+ K +T+D+ ++ Y + R G + M PS M T AG
Sbjct: 833 SKNKHITIDKHKLTYYNREGGEGITYDELVNRRGRVPQARMGPSYVSAPRNMATGGIAAG 892
Query: 594 ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPG----SWGTSPQYQPGSPPSRAYEA 649
A G+ M W+ + P N G+ G SWG + + G + A
Sbjct: 893 AAATSSGLSGGMTP-GWSSFDGGKTPAVNAHGGSGGGGVSSWGGASTW--GGQGNGGASA 949
Query: 650 PTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPS 682
G AS GG + A + +S + N S
Sbjct: 950 WGGAGGGASAWGGQGTGATSTWGGASAWGNKSS 982
Score = 53 (23.7 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 626 GNPGSWGTSPQYQPGSPPSRAYEA-----PTPGSGWASTPGGNYSDAGTPRDSSSTYVN 679
GN SWG + + G + A G AST GGN ++ T +S + N
Sbjct: 978 GNKSSWGGASTWASGGESNGAMSTWGGTGDRSAYGGASTWGGNNNNKSTRDGGASAWGN 1036
>POMBASE|SPAC23C4.19 [details] [associations]
symbol:spt5 "transcription elongation factor Spt5"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006397 "mRNA processing" evidence=IPI] [GO:0032044 "DSIF
complex" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
PomBase:SPAC23C4.19 Pfam:PF00467 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0006351 GO:GO:0032968
GO:GO:0034243 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 PANTHER:PTHR11125:SF7 Pfam:PF03439 Pfam:PF11942
EMBL:AB028017 PIR:T38274 RefSeq:NP_593191.1
ProteinModelPortal:O13936 STRING:O13936 EnsemblFungi:SPAC23C4.19.1
GeneID:2541916 KEGG:spo:SPAC23C4.19 HOGENOM:HOG000189404
OMA:GGASTWG OrthoDB:EOG4HTD1J NextBio:20803003 Uniprot:O13936
Length = 990
Score = 383 (139.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 167/615 (27%), Positives = 271/615 (44%)
Query: 92 VVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVER 151
+ VDN+ + L R+ + + +G + K P R N EA + +
Sbjct: 351 LAQVDNLSEN---GLTARVRIVPRIDYSDGLK-RKNSATRPQARLFNESEAFKSNPSKFS 406
Query: 152 RRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIAS 211
+R P F N F+DGFL K + + S+ + + PT DE+ KF P N E D+
Sbjct: 407 KRGPRLF-LFNNEE---FEDGFLVKDIRISSLITEGVNPTLDEVSKFN-P--NNE-DL-D 457
Query: 212 LSTLFANRKKGH--FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNS 269
LS+L + K GH F GD V V G+ + G VE V +V GL L V S
Sbjct: 458 LSSLALSVKGGHAEFQPGDHVEVYVGEQTGVSGVVENV-RGSVITMVSSDGL--RLDVPS 514
Query: 270 KELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVT 329
+ L K F G++VKV++G TGMV+++ + + LSDT ++ VF+ D+ E+S
Sbjct: 515 RGLRKRFRHGDYVKVIAGKYKDDTGMVVRISKDEVTFLSDTLMTELTVFSRDLGEASSAQ 574
Query: 330 TGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKK 389
+ YEL DLV LD N+ I V+ + ++V + V V +I + +
Sbjct: 575 A-VNSA--YELHDLVQLDVNTVACIFSVDRDTYKV---IDQNGGVRTVLASQITMRHSNR 628
Query: 390 SNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSS 448
V DRN + + D V+ V G +GKQG + HIYR +F+H+R E+ G A+S +
Sbjct: 629 RGVATDRNGAEIRIGDKVKEVGG--EGKQGTILHIYRAFVFLHNRDIAENNGVFSARSRN 686
Query: 449 CVVVG--GSRANGDRNGDAYSRFNSLRTPP--RIPQSPGRYSXXXXXXXXXXXXXXXXHD 504
+ G+R + D + N PP + ++ GR
Sbjct: 687 VATIAAKGARISADLTKMNPALSNGPALPPVANLKRTIGRDKAIGATVRIRRGPMKGLLG 746
Query: 505 ALVGTT-VKVRLGPYKGYRGRVVDVKGQSVRVELES-QMKVVT--VDRSM-ISDNVVVST 559
+ TT R+ + G ++V + +++ ++ ++ T ++RS I + +
Sbjct: 747 VIKDTTDANARVELHTG--NKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTA 804
Query: 560 PYRDTPRYGMGSETPM--HPSRTPLHPY--MTPMRDAGA-TPI-HDGMRTPM-----RDR 608
+ P + G+ TP + SRTP TP ++G+ TP + G RTP +
Sbjct: 805 DGPNVPNWAQGARTPAVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTP 864
Query: 609 AWNPYTPMSPPRDNWEDGNPG-SWGT---SPQYQPGSPPSRAYEAPTPGSGW---ASTPG 661
AWN + +P W GN +W +P + G+ + A+ A W TP
Sbjct: 865 AWNAGS-RTPA---WNSGNKTPAWNVGNKTPAWNSGAK-TPAWNAGNKTPSWNNGTKTPA 919
Query: 662 GNYSDAGTPRDSSST 676
N + TP ++ T
Sbjct: 920 WNANQ--TPMVANGT 932
Score = 320 (117.7 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 89/252 (35%), Positives = 136/252 (53%)
Query: 1 MQKCID---KGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIR 57
M+K +D S L+I S D L YIY+EA K++HV +A G+ N+Y+ ++LVPI+
Sbjct: 260 MRKAMDLQYTSSPLEIISAFQRDSLVGYIYVEARKQSHVLDALNGVLNVYTNNMILVPIK 319
Query: 58 EMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALAN 117
EM D+L V+ + ++L +VR++ G Y GDLA+V ++ V+++PRID ++
Sbjct: 320 EMPDLLKVQKQVVELLPGAYVRIRRGKYAGDLAQVDNLSENGLTARVRIVPRIDY---SD 376
Query: 118 KLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKT 177
L+ + A + P R N EA + + +R P F N F+DGFL K
Sbjct: 377 GLKRKNSATR----PQARLFNESEAFKSNPSKFSKRGPRLF-LFNNEE---FEDGFLVKD 428
Query: 178 VSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGH--FMKGDAVIVIKG 235
+ + S+ + + PT DE+ KF P N E D+ LS+L + K GH F GD V V G
Sbjct: 429 IRISSLITEGVNPTLDEVSKFN-P--NNE-DL-DLSSLALSVKGGHAEFQPGDHVEVYVG 483
Query: 236 DLKNLKGWVEKV 247
+ + G VE V
Sbjct: 484 EQTGVSGVVENV 495
Score = 114 (45.2 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 47/130 (36%), Positives = 60/130 (46%)
Query: 564 TPRYGMGSETPMHPSRTPLHPYMTPMRDAG-ATPI-HDGMRTPMRDRAWNP-YTPMSPPR 620
TP + +G++TP S TP +AG TP ++G +TP AWN TPM
Sbjct: 881 TPAWNVGNKTPAWNSGAK-----TPAWNAGNKTPSWNNGTKTP----AWNANQTPMVA-- 929
Query: 621 DNWEDGNPGSWGTSPQYQPGSPP-------SRAYEAPTPGSGWASTPGGNYSDAGTPRDS 673
+G SWG +P Y S S+ Y APTPG+ A TPGG + G
Sbjct: 930 ----NGTNTSWGQTPAYGGFSETNWDTEDNSKPYTAPTPGAWAAPTPGGWDDEEG----D 981
Query: 674 SSTYVNAPSP 683
S YV PSP
Sbjct: 982 SPKYV-PPSP 990
Score = 56 (24.8 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 20/61 (32%), Positives = 22/61 (36%)
Query: 558 STPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMS 617
+T + TP YG SET PY P A A P G D Y P S
Sbjct: 933 NTSWGQTPAYGGFSETNWDTEDNS-KPYTAPTPGAWAAPTPGGWDDEEGDSP--KYVPPS 989
Query: 618 P 618
P
Sbjct: 990 P 990
>TAIR|locus:2137420 [details] [associations]
symbol:AT4G08360 "AT4G08360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL109819
EMBL:AL161511 EMBL:AY122908 IPI:IPI00543961 PIR:T14190
RefSeq:NP_192576.1 UniGene:At.33757 ProteinModelPortal:Q9STN2
STRING:Q9STN2 PaxDb:Q9STN2 PRIDE:Q9STN2 EnsemblPlants:AT4G08360.1
GeneID:826392 KEGG:ath:AT4G08360 TAIR:At4g08360 eggNOG:KOG1998
InParanoid:Q9STN2 PhylomeDB:Q9STN2 Genevestigator:Q9STN2
Uniprot:Q9STN2
Length = 141
Score = 303 (111.7 bits), Expect = 6.8e-26, P = 6.8e-26
Identities = 64/105 (60%), Positives = 77/105 (73%)
Query: 734 FMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIK 793
FMPDILV E VGVIR+V DG C+V LGS G GDTI +E+EIV PRK+D +K
Sbjct: 40 FMPDILVTVHNSE--VGVIRDV-SDGMCKVSLGSGGEGDTIMVPSSELEIVRPRKSDHVK 96
Query: 794 IMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 838
I+GG + G T KLIG+DG D IVK+D +LDVKILD+A+LAK QP
Sbjct: 97 ILGGSYLGLTCKLIGIDGLDAIVKIDGNLDVKILDLALLAKFVQP 141
>TAIR|locus:4515103232 [details] [associations]
symbol:WIH3 "AT3G49845" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 IPI:IPI01020235 RefSeq:NP_001118805.1
UniGene:At.35564 EnsemblPlants:AT3G49845.1 GeneID:6240705
KEGG:ath:AT3G49845 OMA:GYPANSA Uniprot:F4IZ80
Length = 124
Score = 99 (39.9 bits), Expect = 0.00048, P = 0.00048
Identities = 30/102 (29%), Positives = 38/102 (37%)
Query: 569 MGSETPMHPSRTPLHPYMTPMRD----AGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWE 624
M + P HP P P P ++ AG P G P +A P PP+ +
Sbjct: 1 MSYQDPQHPVSAP-PPQGYPPKEGYPPAGYPP-PAGYPPPQYPQAGYPPAGYPPPQQGYG 58
Query: 625 DGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSD 666
G P PQY G PP Y+ P P + P N D
Sbjct: 59 QGYPAQGYPPPQYPQGHPPQYPYQGPPPPH-YGQAPPKNKKD 99
>UNIPROTKB|P11414 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:10029 "Cricetulus griseus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000684 Pfam:PF05001
PROSITE:PS00115 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:M19538 PIR:A27677
ProteinModelPortal:P11414 Uniprot:P11414
Length = 467
Score = 122 (48.0 bits), Expect = 0.00050, P = 0.00050
Identities = 44/145 (30%), Positives = 66/145 (45%)
Query: 558 STPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPM- 616
S+PY +P G G+ M PS +P P P G TP +P +++P +P
Sbjct: 75 SSPYIPSP--G-GA---MSPSYSPTSPAYEPRSPGGYTP-QSPSYSPTSP-SYSPTSPSY 126
Query: 617 SPPRDNWEDGNPGSWGTSPQYQPGSP---PSRAYEAPTPGSGWASTPGGNYSDAGTPRDS 673
SP N+ +P TSP Y P SP P+ +PT S ++P +YS
Sbjct: 127 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSP 184
Query: 674 SSTYVNAPSP-YLPSTPGGQPMTPN 697
+S + SP Y P++P P +P+
Sbjct: 185 TSPSYSPTSPSYSPTSPSYSPTSPS 209
>UNIPROTKB|I3LQ53 [details] [associations]
symbol:I3LQ53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000684 Pfam:PF05001 PROSITE:PS00115 GO:GO:0003677
GO:GO:0006366 GO:GO:0005665 GeneTree:ENSGT00700000104490
EMBL:FP565284 Ensembl:ENSSSCT00000030016 OMA:YAESDYL Uniprot:I3LQ53
Length = 543
Score = 122 (48.0 bits), Expect = 0.00063, P = 0.00063
Identities = 44/145 (30%), Positives = 66/145 (45%)
Query: 558 STPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPM- 616
S+PY +P G G+ M PS +P P P G TP +P +++P +P
Sbjct: 151 SSPYIPSP--G-GA---MSPSYSPTSPAYEPRSPGGYTP-QSPSYSPTSP-SYSPTSPSY 202
Query: 617 SPPRDNWEDGNPGSWGTSPQYQPGSP---PSRAYEAPTPGSGWASTPGGNYSDAGTPRDS 673
SP N+ +P TSP Y P SP P+ +PT S ++P +YS
Sbjct: 203 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSP 260
Query: 674 SSTYVNAPSP-YLPSTPGGQPMTPN 697
+S + SP Y P++P P +P+
Sbjct: 261 TSPSYSPTSPSYSPTSPSYSPTSPS 285
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 838 807 0.00098 121 3 11 22 0.44 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 618 (66 KB)
Total size of DFA: 384 KB (2187 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 78.32u 0.09s 78.41t Elapsed: 00:00:03
Total cpu time: 78.33u 0.09s 78.42t Elapsed: 00:00:03
Start: Sat May 11 07:22:46 2013 End: Sat May 11 07:22:49 2013