Query 003214
Match_columns 838
No_of_seqs 213 out of 1712
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 19:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 3E-137 6E-142 1116.1 82.6 831 1-835 1-838 (1010)
2 COG5656 SXM1 Importin, protein 100.0 4E-104 9E-109 826.7 69.1 827 2-836 1-840 (970)
3 KOG1992 Nuclear export recepto 100.0 5.8E-79 1.3E-83 646.3 64.0 791 2-835 3-835 (960)
4 KOG1993 Nuclear transport rece 100.0 9.9E-77 2.1E-81 626.1 55.2 781 6-837 2-856 (978)
5 KOG2274 Predicted importin 9 [ 100.0 8.8E-66 1.9E-70 551.9 56.4 768 1-836 1-825 (1005)
6 KOG2023 Nuclear transport rece 100.0 3.6E-55 7.9E-60 454.2 40.0 732 3-833 12-805 (885)
7 COG5657 CSE1 CAS/CSE protein i 100.0 6.3E-51 1.4E-55 439.8 51.3 776 1-835 1-824 (947)
8 KOG2171 Karyopherin (importin) 100.0 7.1E-50 1.5E-54 444.5 55.0 671 1-776 1-692 (1075)
9 PF08506 Cse1: Cse1; InterPro 100.0 2.1E-42 4.6E-47 362.7 24.9 350 150-524 1-370 (370)
10 KOG1241 Karyopherin (importin) 100.0 1.3E-38 2.9E-43 337.2 52.6 686 5-774 2-730 (859)
11 COG5215 KAP95 Karyopherin (imp 100.0 1E-33 2.2E-38 290.0 52.0 683 1-772 1-728 (858)
12 PF03378 CAS_CSE1: CAS/CSE pro 99.9 1.3E-26 2.9E-31 248.5 22.2 288 533-835 16-314 (435)
13 KOG2022 Nuclear transport rece 99.9 1.1E-20 2.4E-25 204.8 64.2 639 3-685 6-753 (982)
14 COG5101 CRM1 Importin beta-rel 99.9 1.5E-20 3.3E-25 195.5 48.6 533 2-570 12-649 (1053)
15 KOG2021 Nuclear mRNA export fa 99.7 1.7E-12 3.7E-17 139.2 53.4 502 4-552 3-585 (980)
16 KOG2081 Nuclear transport regu 99.6 1.5E-12 3.3E-17 136.8 35.0 493 22-583 2-551 (559)
17 KOG2171 Karyopherin (importin) 99.6 4E-09 8.7E-14 120.3 59.3 736 9-833 84-989 (1075)
18 KOG2020 Nuclear transport rece 99.5 9.5E-11 2.1E-15 135.9 40.6 173 4-185 10-200 (1041)
19 KOG1241 Karyopherin (importin) 99.4 2.5E-10 5.3E-15 123.6 30.7 439 315-796 230-710 (859)
20 PF03810 IBN_N: Importin-beta 99.4 8.2E-13 1.8E-17 107.6 8.1 75 24-98 1-76 (77)
21 KOG2023 Nuclear transport rece 99.3 3.4E-08 7.5E-13 105.5 40.6 677 14-804 58-824 (885)
22 COG5215 KAP95 Karyopherin (imp 99.1 2E-07 4.2E-12 98.1 32.9 442 315-796 234-710 (858)
23 KOG1824 TATA-binding protein-i 99.1 4.7E-05 1E-09 85.3 53.5 612 8-714 9-729 (1233)
24 KOG1824 TATA-binding protein-i 98.8 0.00072 1.6E-08 76.3 51.7 593 9-687 52-743 (1233)
25 PF08389 Xpo1: Exportin 1-like 98.8 5.1E-08 1.1E-12 91.1 11.1 129 101-234 1-136 (148)
26 KOG1991 Nuclear transport rece 98.5 0.0068 1.5E-07 69.4 47.6 636 10-714 95-807 (1010)
27 KOG0213 Splicing factor 3b, su 98.3 0.0017 3.6E-08 71.4 31.1 251 500-778 716-971 (1172)
28 KOG0915 Uncharacterized conser 98.3 0.00059 1.3E-08 80.8 29.1 199 428-649 969-1183(1702)
29 KOG0212 Uncharacterized conser 98.2 0.00031 6.8E-09 74.8 23.0 384 383-795 13-404 (675)
30 PF01602 Adaptin_N: Adaptin N 98.1 0.029 6.2E-07 64.6 39.1 503 4-665 7-522 (526)
31 KOG1242 Protein containing ada 97.9 0.0046 9.9E-08 67.6 25.1 335 385-760 111-449 (569)
32 PTZ00429 beta-adaptin; Provisi 97.8 0.14 3.1E-06 59.8 42.8 139 12-153 40-209 (746)
33 PLN03200 cellulose synthase-in 97.8 0.29 6.2E-06 62.7 45.5 684 5-809 103-872 (2102)
34 PF01602 Adaptin_N: Adaptin N 97.8 0.0032 7E-08 72.4 23.0 204 428-668 91-297 (526)
35 KOG1248 Uncharacterized conser 97.7 0.041 8.9E-07 64.6 30.4 198 385-588 712-918 (1176)
36 PF10508 Proteasom_PSMB: Prote 97.7 0.012 2.5E-07 66.6 26.0 330 463-817 80-439 (503)
37 KOG1020 Sister chromatid cohes 97.6 0.1 2.2E-06 62.8 31.8 351 429-803 829-1260(1692)
38 PLN03200 cellulose synthase-in 97.6 0.5 1.1E-05 60.7 49.2 372 386-826 546-934 (2102)
39 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00037 8E-09 58.4 7.7 79 477-557 3-82 (97)
40 PTZ00429 beta-adaptin; Provisi 97.5 0.13 2.8E-06 60.2 30.5 92 428-531 117-210 (746)
41 KOG0166 Karyopherin (importin) 97.5 0.0089 1.9E-07 64.9 19.0 261 429-710 123-396 (514)
42 KOG0213 Splicing factor 3b, su 97.3 0.43 9.4E-06 53.3 55.0 175 435-627 777-958 (1172)
43 KOG1059 Vesicle coat complex A 97.3 0.033 7.2E-07 61.7 20.7 137 464-624 148-284 (877)
44 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.00092 2E-08 56.1 6.6 92 432-528 2-95 (97)
45 KOG0166 Karyopherin (importin) 97.2 0.0033 7.1E-08 68.2 11.9 222 429-669 165-395 (514)
46 KOG0212 Uncharacterized conser 97.2 0.2 4.2E-06 54.3 24.4 217 494-734 78-301 (675)
47 PF05918 API5: Apoptosis inhib 97.1 0.22 4.9E-06 55.4 24.7 303 472-806 34-354 (556)
48 KOG1410 Nuclear transport rece 97.0 0.78 1.7E-05 50.8 49.7 145 1-155 1-160 (1082)
49 COG5181 HSH155 U2 snRNP splice 97.0 0.16 3.4E-06 55.4 21.7 252 499-778 520-776 (975)
50 PF13513 HEAT_EZ: HEAT-like re 96.9 0.00074 1.6E-08 50.4 2.5 54 474-527 1-55 (55)
51 PF10508 Proteasom_PSMB: Prote 96.8 0.34 7.3E-06 54.9 24.5 291 478-797 56-366 (503)
52 KOG1242 Protein containing ada 96.8 1.2 2.6E-05 49.4 30.2 348 394-772 41-420 (569)
53 PF03378 CAS_CSE1: CAS/CSE pro 96.8 0.049 1.1E-06 59.7 16.7 184 572-777 17-211 (435)
54 PF12719 Cnd3: Nuclear condens 96.7 0.091 2E-06 55.1 17.8 176 456-649 23-208 (298)
55 KOG1060 Vesicle coat complex A 96.7 0.49 1.1E-05 53.4 23.5 251 497-803 284-539 (968)
56 PF12717 Cnd1: non-SMC mitotic 96.7 0.023 4.9E-07 54.5 12.1 151 430-592 2-157 (178)
57 KOG1992 Nuclear export recepto 96.7 1.7 3.6E-05 49.7 51.8 241 468-736 506-775 (960)
58 COG5181 HSH155 U2 snRNP splice 96.7 0.26 5.7E-06 53.8 20.5 192 386-592 297-493 (975)
59 PF12460 MMS19_C: RNAPII trans 96.5 0.82 1.8E-05 50.5 24.6 281 389-685 116-413 (415)
60 PF08167 RIX1: rRNA processing 96.4 0.047 1E-06 51.4 12.0 130 456-588 22-162 (165)
61 KOG1943 Beta-tubulin folding c 96.4 3.2 7E-05 49.0 42.1 66 84-153 337-410 (1133)
62 KOG1061 Vesicle coat complex A 96.3 0.26 5.6E-06 55.7 18.5 149 428-588 98-246 (734)
63 KOG2022 Nuclear transport rece 96.2 2.8 6E-05 48.4 25.6 114 499-626 503-622 (982)
64 COG5096 Vesicle coat complex, 96.1 3.7 8.1E-05 47.6 31.3 121 459-588 91-211 (757)
65 COG5064 SRP1 Karyopherin (impo 96.0 0.15 3.3E-06 51.5 13.5 119 429-554 170-296 (526)
66 cd00020 ARM Armadillo/beta-cat 96.0 0.0074 1.6E-07 53.4 4.0 97 429-528 20-119 (120)
67 KOG1248 Uncharacterized conser 95.9 5.7 0.00012 47.6 55.3 307 384-715 585-906 (1176)
68 KOG0915 Uncharacterized conser 95.7 0.99 2.1E-05 55.0 20.3 198 383-588 970-1179(1702)
69 PF12348 CLASP_N: CLASP N term 95.6 0.27 5.8E-06 49.4 14.0 165 383-558 20-192 (228)
70 KOG1062 Vesicle coat complex A 95.5 6.2 0.00014 45.2 36.1 160 17-181 47-233 (866)
71 KOG1240 Protein kinase contain 95.5 0.22 4.8E-06 58.7 13.9 279 385-713 438-751 (1431)
72 KOG1993 Nuclear transport rece 95.4 6.5 0.00014 45.0 26.0 228 463-710 529-772 (978)
73 PF13513 HEAT_EZ: HEAT-like re 95.4 0.0098 2.1E-07 44.2 2.0 55 430-487 1-55 (55)
74 PRK09687 putative lyase; Provi 95.3 0.53 1.1E-05 48.6 14.9 117 428-567 35-152 (280)
75 PF08767 CRM1_C: CRM1 C termin 95.2 1.1 2.5E-05 47.1 17.6 122 539-669 67-196 (319)
76 PF02985 HEAT: HEAT repeat; I 95.1 0.019 4.2E-07 36.7 2.4 30 501-530 1-30 (31)
77 KOG1058 Vesicle coat complex C 95.1 3.7 7.9E-05 46.6 20.9 144 368-545 110-285 (948)
78 KOG0211 Protein phosphatase 2A 95.1 9.5 0.00021 44.7 30.7 134 383-530 531-665 (759)
79 PF12348 CLASP_N: CLASP N term 95.0 0.42 9.2E-06 47.9 13.2 175 511-705 18-204 (228)
80 PRK09687 putative lyase; Provi 94.9 0.21 4.6E-06 51.5 10.8 150 385-569 69-218 (280)
81 PF04826 Arm_2: Armadillo-like 94.9 0.19 4.2E-06 50.7 10.1 179 468-668 20-206 (254)
82 KOG1062 Vesicle coat complex A 94.8 9.8 0.00021 43.7 27.2 102 428-543 82-183 (866)
83 PF14500 MMS19_N: Dos2-interac 94.8 0.68 1.5E-05 47.1 13.8 241 465-731 4-257 (262)
84 PF12717 Cnd1: non-SMC mitotic 94.7 1.5 3.3E-05 41.8 15.4 76 473-556 1-76 (178)
85 COG5240 SEC21 Vesicle coat com 94.5 9.2 0.0002 42.1 31.5 93 431-529 463-555 (898)
86 PF05804 KAP: Kinesin-associat 94.5 2.6 5.7E-05 49.0 19.1 344 431-811 264-620 (708)
87 KOG1058 Vesicle coat complex C 94.4 11 0.00025 42.9 22.6 81 462-550 101-181 (948)
88 KOG2025 Chromosome condensatio 93.7 16 0.00034 41.6 22.0 69 463-531 88-157 (892)
89 PF13646 HEAT_2: HEAT repeats; 93.6 0.095 2.1E-06 43.3 4.2 76 428-525 12-88 (88)
90 KOG4224 Armadillo repeat prote 93.2 0.8 1.7E-05 47.0 10.4 180 468-668 216-406 (550)
91 cd00020 ARM Armadillo/beta-cat 93.2 0.056 1.2E-06 47.7 2.2 86 468-555 15-103 (120)
92 KOG1240 Protein kinase contain 92.8 3.5 7.6E-05 49.3 16.2 58 474-532 437-494 (1431)
93 PF12460 MMS19_C: RNAPII trans 92.6 19 0.00042 39.7 27.0 204 498-729 187-411 (415)
94 PF10521 DUF2454: Protein of u 92.5 15 0.00032 38.1 19.4 213 428-649 14-276 (282)
95 KOG0946 ER-Golgi vesicle-tethe 92.4 14 0.00031 42.4 19.5 212 499-727 21-261 (970)
96 PF05004 IFRD: Interferon-rela 92.3 15 0.00032 38.6 19.0 206 316-553 57-283 (309)
97 KOG1059 Vesicle coat complex A 92.1 26 0.00057 40.0 32.5 76 468-554 307-382 (877)
98 PF10363 DUF2435: Protein of u 92.0 0.95 2.1E-05 37.6 7.8 75 500-577 3-80 (92)
99 PF13646 HEAT_2: HEAT repeats; 91.5 0.076 1.7E-06 43.9 0.9 65 470-555 10-74 (88)
100 COG5096 Vesicle coat complex, 91.5 34 0.00074 40.1 24.6 106 428-550 104-211 (757)
101 PF10274 ParcG: Parkin co-regu 91.4 0.8 1.7E-05 43.1 7.5 89 498-587 36-130 (183)
102 PF05004 IFRD: Interferon-rela 91.2 14 0.00031 38.7 17.6 160 497-669 40-217 (309)
103 KOG0168 Putative ubiquitin fus 91.1 36 0.00078 39.7 24.9 75 498-574 209-289 (1051)
104 KOG4653 Uncharacterized conser 90.9 12 0.00026 43.4 17.1 187 499-706 726-917 (982)
105 KOG4653 Uncharacterized conser 90.8 20 0.00044 41.7 18.8 183 465-669 732-920 (982)
106 PF04826 Arm_2: Armadillo-like 90.7 5.2 0.00011 40.5 13.2 134 428-569 25-160 (254)
107 KOG1020 Sister chromatid cohes 90.5 55 0.0012 40.9 41.5 110 429-548 790-901 (1692)
108 KOG1060 Vesicle coat complex A 90.5 39 0.00085 39.1 25.7 59 468-531 116-174 (968)
109 KOG1078 Vesicle coat complex C 89.3 48 0.001 38.4 28.9 137 383-540 405-541 (865)
110 PF12719 Cnd3: Nuclear condens 88.8 17 0.00036 38.1 16.0 166 11-181 34-207 (298)
111 KOG2160 Armadillo/beta-catenin 88.5 13 0.00029 38.7 14.2 102 428-532 95-199 (342)
112 KOG1077 Vesicle coat complex A 88.1 54 0.0012 37.5 19.5 116 429-555 124-240 (938)
113 PF05918 API5: Apoptosis inhib 88.0 21 0.00045 40.3 16.3 156 385-560 37-195 (556)
114 PF08167 RIX1: rRNA processing 87.9 13 0.00029 34.9 13.0 132 496-643 21-164 (165)
115 PF05536 Neurochondrin: Neuroc 86.2 33 0.00072 39.2 17.3 145 611-760 116-266 (543)
116 COG5240 SEC21 Vesicle coat com 86.0 63 0.0014 36.0 24.8 346 352-736 162-538 (898)
117 PF04510 DUF577: Family of unk 85.9 30 0.00065 32.2 13.4 50 88-137 3-57 (174)
118 KOG2956 CLIP-associating prote 85.3 53 0.0011 35.7 16.6 210 360-586 272-495 (516)
119 PF10363 DUF2435: Protein of u 85.1 2.2 4.9E-05 35.4 5.4 65 467-531 10-74 (92)
120 PRK13800 putative oxidoreducta 85.0 3.2 7E-05 50.8 9.1 50 469-527 816-865 (897)
121 KOG1967 DNA repair/transcripti 84.8 16 0.00036 42.7 13.5 141 634-779 863-1007(1030)
122 PF10521 DUF2454: Protein of u 84.0 23 0.00051 36.6 13.7 159 428-588 87-272 (282)
123 PF01603 B56: Protein phosphat 84.0 38 0.00081 37.3 16.0 161 387-557 150-311 (409)
124 PF08767 CRM1_C: CRM1 C termin 83.1 7.2 0.00016 41.2 9.6 162 612-779 45-226 (319)
125 PF08161 NUC173: NUC173 domain 82.6 9 0.00019 37.1 9.2 137 558-708 18-182 (198)
126 PF02985 HEAT: HEAT repeat; I 82.6 3.5 7.6E-05 26.1 4.4 28 91-118 3-30 (31)
127 PF01603 B56: Protein phosphat 82.1 17 0.00037 40.0 12.4 50 613-664 274-323 (409)
128 PF14500 MMS19_N: Dos2-interac 81.9 25 0.00054 35.9 12.6 151 385-548 97-255 (262)
129 KOG1061 Vesicle coat complex A 81.6 41 0.00089 38.8 15.0 100 461-569 87-186 (734)
130 KOG2213 Apoptosis inhibitor 5/ 81.4 67 0.0015 34.1 15.1 55 473-530 37-91 (460)
131 PF08506 Cse1: Cse1; InterPro 80.9 87 0.0019 33.8 22.0 234 384-652 110-360 (370)
132 PF04821 TIMELESS: Timeless pr 80.6 43 0.00094 34.3 14.0 166 635-809 42-221 (266)
133 PF05536 Neurochondrin: Neuroc 79.8 1.2E+02 0.0026 34.8 20.0 150 637-791 97-255 (543)
134 KOG2021 Nuclear mRNA export fa 79.7 1.3E+02 0.0028 35.0 36.5 96 473-572 206-307 (980)
135 PF05804 KAP: Kinesin-associat 79.6 1.3E+02 0.0029 35.4 18.8 208 429-666 344-563 (708)
136 PF03224 V-ATPase_H_N: V-ATPas 78.9 88 0.0019 33.0 16.2 126 402-552 70-200 (312)
137 PF11865 DUF3385: Domain of un 77.7 28 0.0006 32.5 10.5 127 407-557 9-142 (160)
138 PF00514 Arm: Armadillo/beta-c 77.0 2.7 5.9E-05 28.6 2.8 29 500-528 12-40 (41)
139 KOG2933 Uncharacterized conser 76.7 17 0.00038 37.0 9.2 132 384-531 102-236 (334)
140 PF08064 UME: UME (NUC010) dom 76.2 16 0.00035 31.4 7.9 87 500-588 11-103 (107)
141 KOG2274 Predicted importin 9 [ 73.8 2E+02 0.0043 34.2 50.5 260 435-713 469-744 (1005)
142 COG5064 SRP1 Karyopherin (impo 73.3 8.1 0.00017 39.6 6.0 129 430-564 130-264 (526)
143 PRK13800 putative oxidoreducta 73.2 4.7 0.0001 49.5 5.3 78 428-526 819-896 (897)
144 smart00802 UME Domain in UVSB 72.7 30 0.00064 29.7 8.5 89 497-587 8-102 (107)
145 PF07571 DUF1546: Protein of u 72.4 10 0.00022 31.6 5.5 58 382-445 18-78 (92)
146 KOG0392 SNF2 family DNA-depend 72.1 24 0.00052 42.9 10.2 155 387-555 750-908 (1549)
147 KOG0414 Chromosome condensatio 71.6 2.6E+02 0.0055 34.5 19.0 128 391-531 898-1029(1251)
148 COG5218 YCG1 Chromosome conden 71.3 56 0.0012 36.5 11.9 74 457-531 89-163 (885)
149 COG5098 Chromosome condensatio 71.0 41 0.00088 38.3 11.0 137 384-531 277-417 (1128)
150 KOG1943 Beta-tubulin folding c 70.8 2.5E+02 0.0055 34.2 48.1 138 384-530 355-501 (1133)
151 cd08050 TAF6 TATA Binding Prot 70.6 29 0.00062 37.1 9.9 122 293-444 211-339 (343)
152 KOG0211 Protein phosphatase 2A 69.7 2.4E+02 0.0053 33.5 24.9 347 364-759 273-629 (759)
153 KOG2956 CLIP-associating prote 68.9 1.8E+02 0.004 31.8 17.8 176 4-208 286-476 (516)
154 KOG1077 Vesicle coat complex A 68.8 2.3E+02 0.0049 32.8 24.6 141 431-584 304-448 (938)
155 COG5116 RPN2 26S proteasome re 68.7 21 0.00046 39.4 8.2 115 429-560 565-679 (926)
156 PF03224 V-ATPase_H_N: V-ATPas 68.0 1.2E+02 0.0025 32.0 13.9 163 35-208 54-226 (312)
157 PF08064 UME: UME (NUC010) dom 66.9 34 0.00074 29.4 7.8 83 725-809 12-96 (107)
158 PF08569 Mo25: Mo25-like; Int 66.0 1.8E+02 0.0038 31.0 14.4 151 36-208 76-237 (335)
159 PF10350 DUF2428: Putative dea 65.6 1.2E+02 0.0027 30.8 13.0 122 430-552 111-249 (255)
160 KOG1525 Sister chromatid cohes 65.5 3.7E+02 0.0081 34.1 20.9 59 743-802 276-334 (1266)
161 KOG2549 Transcription initiati 65.1 64 0.0014 35.9 10.9 102 317-445 262-370 (576)
162 smart00802 UME Domain in UVSB 63.3 69 0.0015 27.5 8.8 78 535-627 3-87 (107)
163 KOG2062 26S proteasome regulat 62.6 70 0.0015 36.8 10.9 114 429-559 568-681 (929)
164 KOG2085 Serine/threonine prote 62.3 1.7E+02 0.0037 31.4 13.0 94 614-712 319-419 (457)
165 KOG0414 Chromosome condensatio 61.3 4E+02 0.0087 33.0 32.6 137 387-532 292-431 (1251)
166 KOG2160 Armadillo/beta-catenin 60.8 2E+02 0.0043 30.4 13.2 178 474-667 97-282 (342)
167 KOG4524 Uncharacterized conser 60.5 3.7E+02 0.0081 32.4 21.4 127 670-800 839-976 (1014)
168 PF10274 ParcG: Parkin co-regu 60.0 77 0.0017 30.1 9.3 62 613-676 57-118 (183)
169 KOG2549 Transcription initiati 58.2 1.8E+02 0.0038 32.6 12.7 141 498-651 205-352 (576)
170 PF13001 Ecm29: Proteasome sta 57.5 1.2E+02 0.0025 34.6 12.1 82 6-99 25-113 (501)
171 PF13925 Katanin_con80: con80 57.3 1.7E+02 0.0037 27.4 11.8 47 108-154 46-100 (164)
172 KOG2062 26S proteasome regulat 56.7 1.4E+02 0.0031 34.5 12.0 139 428-588 531-672 (929)
173 KOG1822 Uncharacterized conser 56.0 6E+02 0.013 33.4 25.3 166 390-557 804-972 (2067)
174 KOG4535 HEAT and armadillo rep 53.8 60 0.0013 35.3 8.2 134 389-524 456-598 (728)
175 PLN03076 ARF guanine nucleotid 52.8 7E+02 0.015 33.2 31.1 97 51-154 1150-1255(1780)
176 KOG3961 Uncharacterized conser 52.7 1.4E+02 0.0029 29.0 9.5 88 498-587 112-205 (262)
177 COG5095 TAF6 Transcription ini 52.5 1.7E+02 0.0037 29.9 10.6 135 499-646 196-336 (450)
178 PF13251 DUF4042: Domain of un 52.1 2.2E+02 0.0048 27.2 14.3 121 509-668 49-175 (182)
179 PF08389 Xpo1: Exportin 1-like 52.0 90 0.002 28.2 8.7 47 474-524 100-148 (148)
180 smart00185 ARM Armadillo/beta- 51.4 11 0.00025 25.2 1.9 28 501-528 13-40 (41)
181 PF12054 DUF3535: Domain of un 50.8 3.3E+02 0.0071 30.3 14.0 81 429-514 100-182 (441)
182 KOG3036 Protein involved in ce 50.7 2.7E+02 0.0059 27.8 12.2 134 53-208 93-246 (293)
183 KOG1967 DNA repair/transcripti 48.1 2.3E+02 0.0051 33.8 12.3 119 612-736 885-1007(1030)
184 PF00514 Arm: Armadillo/beta-c 47.9 44 0.00096 22.5 4.4 26 92-117 16-41 (41)
185 KOG0392 SNF2 family DNA-depend 47.9 6.7E+02 0.014 31.5 17.3 123 428-555 89-220 (1549)
186 KOG1820 Microtubule-associated 47.6 3.6E+02 0.0079 32.5 14.2 184 496-703 249-439 (815)
187 PF12231 Rif1_N: Rap1-interact 47.1 4.1E+02 0.0088 28.8 23.7 245 406-668 37-304 (372)
188 cd08050 TAF6 TATA Binding Prot 46.5 3.8E+02 0.0081 28.7 13.2 140 498-648 176-319 (343)
189 PF04078 Rcd1: Cell differenti 46.1 3.3E+02 0.0072 27.5 16.0 171 17-209 8-218 (262)
190 PF12231 Rif1_N: Rap1-interact 44.7 4.4E+02 0.0096 28.5 19.4 189 473-683 59-260 (372)
191 PF01465 GRIP: GRIP domain; I 43.9 48 0.001 23.4 4.0 35 84-118 3-37 (46)
192 TIGR02270 conserved hypothetic 43.8 80 0.0017 34.6 7.7 77 428-527 129-205 (410)
193 PF08146 BP28CT: BP28CT (NUC21 43.1 2.2E+02 0.0047 26.3 9.4 74 516-590 37-117 (153)
194 PF11865 DUF3385: Domain of un 42.0 1.5E+02 0.0031 27.7 8.2 61 720-781 82-142 (160)
195 COG5656 SXM1 Importin, protein 41.9 6.4E+02 0.014 29.6 46.3 160 606-774 428-587 (970)
196 KOG2137 Protein kinase [Signal 41.2 2.5E+02 0.0055 32.6 11.1 87 613-706 369-457 (700)
197 PF12830 Nipped-B_C: Sister ch 41.0 77 0.0017 30.4 6.4 65 5-71 9-78 (187)
198 KOG1851 Uncharacterized conser 40.8 4.6E+02 0.0099 33.7 13.7 150 34-206 1524-1678(1710)
199 KOG1517 Guanine nucleotide bin 40.1 88 0.0019 37.7 7.5 96 430-531 571-673 (1387)
200 KOG2025 Chromosome condensatio 39.7 1.9E+02 0.0041 33.5 9.7 90 428-523 97-187 (892)
201 KOG1820 Microtubule-associated 39.6 4.1E+02 0.0088 32.1 13.0 139 429-575 308-449 (815)
202 PF08569 Mo25: Mo25-like; Int 39.3 1.1E+02 0.0024 32.5 7.7 76 457-534 207-288 (335)
203 KOG4224 Armadillo repeat prote 38.7 1.5E+02 0.0032 31.2 8.1 141 429-573 221-367 (550)
204 PF04388 Hamartin: Hamartin pr 38.7 7.3E+02 0.016 29.4 15.6 150 502-686 6-156 (668)
205 COG5116 RPN2 26S proteasome re 38.0 3.4E+02 0.0075 30.5 11.0 139 429-588 529-669 (926)
206 smart00755 Grip golgin-97, Ran 38.0 64 0.0014 22.8 3.8 34 85-119 3-36 (46)
207 KOG0168 Putative ubiquitin fus 37.7 5.7E+02 0.012 30.5 13.1 53 758-810 546-599 (1051)
208 PF14668 RICTOR_V: Rapamycin-i 37.4 83 0.0018 24.8 4.8 54 432-489 3-58 (73)
209 KOG1078 Vesicle coat complex C 37.1 7.7E+02 0.017 29.2 18.7 34 498-531 280-313 (865)
210 PF14225 MOR2-PAG1_C: Cell mor 37.0 3.6E+02 0.0079 27.5 10.7 109 456-573 150-258 (262)
211 PF12765 Cohesin_HEAT: HEAT re 36.3 32 0.00069 23.7 2.1 25 499-523 17-41 (42)
212 KOG0946 ER-Golgi vesicle-tethe 36.3 8E+02 0.017 29.1 30.4 239 385-666 38-295 (970)
213 PF11698 V-ATPase_H_C: V-ATPas 34.8 1E+02 0.0022 27.0 5.5 75 37-120 44-118 (119)
214 COG5218 YCG1 Chromosome conden 34.2 1.7E+02 0.0036 33.0 8.1 87 428-520 103-190 (885)
215 PF09324 DUF1981: Domain of un 33.8 2.1E+02 0.0045 23.4 6.9 50 99-148 29-84 (86)
216 KOG2259 Uncharacterized conser 33.6 8.1E+02 0.018 28.4 15.0 57 473-532 386-442 (823)
217 smart00567 EZ_HEAT E-Z type HE 33.0 57 0.0012 20.2 2.8 14 475-488 2-15 (30)
218 KOG1293 Proteins containing ar 32.9 84 0.0018 35.7 5.7 60 470-532 471-536 (678)
219 KOG1525 Sister chromatid cohes 32.9 1.2E+03 0.025 30.0 20.8 83 723-809 181-263 (1266)
220 cd03572 ENTH_epsin_related ENT 32.8 80 0.0017 27.8 4.5 48 484-531 22-69 (122)
221 PF03130 HEAT_PBS: PBS lyase H 32.4 27 0.00059 21.2 1.2 14 476-489 1-14 (27)
222 PF08713 DNA_alkylation: DNA a 31.9 78 0.0017 31.0 5.1 98 428-543 98-196 (213)
223 KOG1837 Uncharacterized conser 31.7 5E+02 0.011 33.3 12.2 72 102-181 1518-1592(1621)
224 PF14911 MMS22L_C: S-phase gen 31.5 6.9E+02 0.015 27.0 21.3 198 463-670 72-290 (373)
225 KOG2137 Protein kinase [Signal 31.0 6.2E+02 0.013 29.6 12.1 113 397-528 377-495 (700)
226 KOG2259 Uncharacterized conser 30.3 9.2E+02 0.02 28.0 20.7 95 429-531 211-312 (823)
227 KOG2032 Uncharacterized conser 30.3 8.1E+02 0.017 27.3 17.5 90 468-558 266-357 (533)
228 smart00145 PI3Ka Phosphoinosit 30.2 70 0.0015 30.6 4.1 59 477-548 61-119 (184)
229 smart00288 VHS Domain present 30.2 4E+02 0.0087 23.8 9.0 37 496-532 33-69 (133)
230 cd03567 VHS_GGA VHS domain fam 30.0 4.2E+02 0.0091 24.0 10.2 67 459-532 4-70 (139)
231 PF04078 Rcd1: Cell differenti 29.7 4E+02 0.0087 27.0 9.3 139 431-595 65-218 (262)
232 PF07571 DUF1546: Protein of u 29.6 2.4E+02 0.0052 23.4 6.7 55 51-114 19-73 (92)
233 smart00638 LPD_N Lipoprotein N 29.1 3.7E+02 0.0079 31.2 10.7 95 428-531 409-511 (574)
234 PF13251 DUF4042: Domain of un 28.3 5.3E+02 0.012 24.6 11.1 143 386-531 2-176 (182)
235 cd00872 PI3Ka_I Phosphoinositi 28.2 73 0.0016 30.0 3.8 59 477-548 56-114 (171)
236 PF10193 Telomere_reg-2: Telom 28.1 2.1E+02 0.0045 24.9 6.4 77 503-579 6-89 (114)
237 cd00256 VATPase_H VATPase_H, r 27.8 8.6E+02 0.019 26.9 21.4 310 91-487 104-423 (429)
238 KOG1048 Neural adherens juncti 27.4 3E+02 0.0065 32.2 9.0 100 470-573 243-349 (717)
239 PF12830 Nipped-B_C: Sister ch 27.1 5.6E+02 0.012 24.5 9.9 84 465-553 13-96 (187)
240 COG5657 CSE1 CAS/CSE protein i 27.0 1.2E+03 0.026 28.2 20.8 122 472-595 97-238 (947)
241 KOG0889 Histone acetyltransfer 26.9 1.6E+03 0.034 32.1 16.1 58 574-648 626-683 (3550)
242 KOG2933 Uncharacterized conser 26.6 2.2E+02 0.0048 29.4 7.0 109 428-543 100-212 (334)
243 KOG0567 HEAT repeat-containing 26.5 1.1E+02 0.0025 30.7 4.9 51 471-530 231-281 (289)
244 PF12783 Sec7_N: Guanine nucle 25.9 5.4E+02 0.012 23.9 9.7 62 744-806 91-154 (168)
245 PF11698 V-ATPase_H_C: V-ATPas 25.6 41 0.00088 29.4 1.5 58 472-529 56-115 (119)
246 cd07064 AlkD_like_1 A new stru 25.2 3.2E+02 0.007 26.7 8.0 129 386-543 62-191 (208)
247 PF02194 PXA: PXA domain; Int 24.5 6E+02 0.013 24.0 11.6 24 48-71 2-25 (185)
248 cd03561 VHS VHS domain family; 24.4 4.4E+02 0.0095 23.5 8.0 37 496-532 33-69 (133)
249 KOG4692 Predicted E3 ubiquitin 24.2 2.8E+02 0.006 28.9 7.1 105 692-803 238-350 (489)
250 PF13001 Ecm29: Proteasome sta 24.1 5.5E+02 0.012 29.1 10.6 134 391-532 301-446 (501)
251 cd00870 PI3Ka_III Phosphoinosi 23.8 1E+02 0.0022 29.0 3.9 59 477-548 63-121 (166)
252 KOG2032 Uncharacterized conser 23.4 1.1E+03 0.023 26.4 16.1 91 496-588 254-349 (533)
253 KOG1517 Guanine nucleotide bin 23.2 3.7E+02 0.0081 32.8 8.8 137 386-531 573-734 (1387)
254 KOG2149 Uncharacterized conser 22.9 5.6E+02 0.012 27.6 9.4 125 463-588 61-189 (393)
255 cd00864 PI3Ka Phosphoinositide 22.4 1.1E+02 0.0025 28.1 3.9 59 477-548 56-114 (152)
256 PF01347 Vitellogenin_N: Lipop 22.3 1.2E+02 0.0025 35.7 5.0 94 429-531 448-555 (618)
257 COG1698 Uncharacterized protei 22.3 3.5E+02 0.0077 22.1 5.9 51 5-56 17-79 (93)
258 KOG4524 Uncharacterized conser 21.9 1.5E+03 0.033 27.7 21.8 108 394-510 572-684 (1014)
259 PF12333 Ipi1_N: Rix1 complex 21.6 3.3E+02 0.0071 23.1 6.3 56 632-687 5-62 (102)
260 PHA01351 putative minor struct 21.5 1.3E+03 0.027 27.0 11.9 26 751-776 213-238 (1070)
261 KOG0889 Histone acetyltransfer 21.4 2.6E+03 0.056 30.2 41.1 242 428-678 1045-1317(3550)
262 cd00869 PI3Ka_II Phosphoinosit 21.3 1.2E+02 0.0027 28.4 3.9 59 477-548 56-114 (169)
263 PF14664 RICTOR_N: Rapamycin-i 20.8 1.1E+03 0.023 25.6 13.7 149 498-666 23-175 (371)
264 KOG1243 Protein kinase [Genera 20.7 1.5E+02 0.0033 34.1 5.1 69 463-532 333-401 (690)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-137 Score=1116.12 Aligned_cols=831 Identities=47% Similarity=0.811 Sum_probs=798.4
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC-CCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ 79 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~-~~~~ 79 (838)
||.+.+.+++.+|++||++.|+.||++|+|+++.|||..+|++|+.+.+.+.+|||+|||||||+|.++|+.++. ..+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998742 1356
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc
Q 003214 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (838)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~ 156 (838)
.+++++|+.||++++..+.+.+..+|.++..|+..|...|||++||++++.+-..++++ .+++||.||++++|.|+|
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred CCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003214 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (838)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (838)
++++.|+++..+++.+||.+++++..++..++ .++.++.++++|||++++++++|..+.+.+.|..||++|+++++++
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s--~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp 238 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQES--YQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP 238 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999987663 5688999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003214 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (838)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (838)
+|.+.++.|++.|.+++|||+|||++++++|+++|||+|+++.+++++|++.|..++++.+++.++++++..+.+.|+++
T Consensus 239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~ 318 (1010)
T KOG1991|consen 239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD 318 (1010)
T ss_pred CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 99888888999999999999999999999999999999998889999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHH
Q 003214 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 396 (838)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~ 396 (838)
+++.+++.|+..|++.+.+|+.++||+..++..+|+|.||++++|+|.|++||.||+|+..|.++|++||+.||.+++..
T Consensus 319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~ 398 (1010)
T KOG1991|consen 319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT 398 (1010)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcch
Q 003214 397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476 (838)
Q Consensus 397 l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~l 476 (838)
++.++|+++++.+++|+.+++.+|..++...++.+.+|||++++|++++.+.++.+|+.+++.|+.+||+|+++++.+++
T Consensus 399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L 478 (1010)
T KOG1991|consen 399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL 478 (1010)
T ss_pred HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH
Confidence 99999999999999999999999988766668999999999999999999998888999999999999999999999999
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhh
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE 554 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~ 554 (838)
|+||||++++|++..|+++..+.++++.+.++|. |++.|||+.|+.||+.|+.++. .++.++|+++++|+.|+.++++
T Consensus 479 rarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 479 RARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999997 8999999999999999999987 5578999999999999999999
Q ss_pred hchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003214 555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 634 (838)
Q Consensus 555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~ 634 (838)
+++|.+..+|+++|..|+++++|||.+++++|+.+|++++++.+++.+.++++.+.+.|++++|.+++.++++.|+++.+
T Consensus 559 ~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 559 VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999998755555567889999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCccccc
Q 003214 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL 714 (838)
Q Consensus 635 l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l 714 (838)
+++.++|++.++++++..||+++++++..+++...++++|.||+++|.+++++.+++.+|++++++.|+||+.+|...+.
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~ 718 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL 718 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Q 003214 715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIA 793 (838)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~-~~~~~~~~~~l~v~~ 793 (838)
+++.|++.++.++++++.+++.+++++..|+++++.++++|+|.++.+++.+++.++.|+.. .+++.+++.++.|++
T Consensus 719 --s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi 796 (1010)
T KOG1991|consen 719 --SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI 796 (1010)
T ss_pred --ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 68899999999999999988889999888999999999999999999999999999999988 789999999999999
Q ss_pred HhhccChHHHHHHHHhcCchHHHHHHHHHhhhhhhhcCcccc
Q 003214 794 DALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVN 835 (838)
Q Consensus 794 ~~~~~~~~~~~~~L~~~~~~~~~~~~w~~~~~~~~~~~~rK~ 835 (838)
.+++|||..++++|+..|++..||..|++....+++.||||+
T Consensus 797 nalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKl 838 (1010)
T KOG1991|consen 797 NALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKL 838 (1010)
T ss_pred HHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999997
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-104 Score=826.74 Aligned_cols=827 Identities=24% Similarity=0.416 Sum_probs=746.2
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC-CCCCC
Q 003214 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQK 80 (838)
Q Consensus 2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~-~~~~~ 80 (838)
|.+++.||+.+|+++|++.|+.||++|++++++|||..+|+++..+++.+..+|+.|+|||||+|.+.|++..+ ....-
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 34789999999999999999999999999999999999999999998899999999999999999999998322 11122
Q ss_pred CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc
Q 003214 81 ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~ 156 (838)
..++.|+.++++++..+..++...|..+..++..|...||| +.|| ++|...+++.++ .++.||.|+.+++|.+||
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 44556666666666667788999999999999999999999 8899 999999999998 689999999999999999
Q ss_pred CCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003214 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (838)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (838)
+.++.|..+..++.++||.+.++...+...++ ..+.++.++++|+|++.+++++|.++...+.+..|+++++.+++.+
T Consensus 160 k~ndeq~di~~li~alfpile~~g~nl~s~~n--y~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkp 237 (970)
T COG5656 160 KYNDEQVDILMLITALFPILEKVGGNLESQGN--YGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKP 237 (970)
T ss_pred hccchHhhHHHHHHHhhHHHHHHhhccccCCc--hhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCC
Confidence 88777778899999999999999887765443 4578999999999999999999999988899999999999999999
Q ss_pred CCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhC-CcccC
Q 003214 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV-GGYLP 315 (838)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~-~~~~~ 315 (838)
+|.+.+..|++.|..++|.|||||++-.++|+++||+++.+.. .+..|...|.. ..|.+++.+++.++...+ +.|++
T Consensus 238 lp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~-~y~~f~~~f~t-~vp~il~tffkqie~wgqgqLWls 315 (970)
T COG5656 238 LPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKK-SYLSFYITFMT-RVPMILATFFKQIEEWGQGQLWLS 315 (970)
T ss_pred CCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCeecc
Confidence 9977777788899999999999999999999999998765432 44566666665 779999999999988765 45899
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003214 316 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (838)
Q Consensus 316 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~ 395 (838)
|...+....|+..|+..+.+|+.++||+.-++.++|+|.++++++++|.|++||+||+|+..|.+++++++..||..++.
T Consensus 316 d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~ 395 (970)
T COG5656 316 DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLI 395 (970)
T ss_pred hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcc
Q 003214 396 ELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGH 475 (838)
Q Consensus 396 ~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~ 475 (838)
.+..++++++++.+++|+...+.++..+|.+.++.+..|+|++.++++..-+.+..+...-++.|+.++|.|.+++++.+
T Consensus 396 ~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygf 475 (970)
T COG5656 396 ISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGF 475 (970)
T ss_pred HHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccc
Confidence 99999999999999999999998888877777899999999999999999777766677789999999999999999999
Q ss_pred hhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003214 476 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (838)
Q Consensus 476 lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (838)
||+|||.+++.+ +..|+++..+.++++.+.++|++++.||++.|+.|++.|+.+....+.++.++|++|+.|+.+.+++
T Consensus 476 L~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f 554 (970)
T COG5656 476 LKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF 554 (970)
T ss_pred hHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc
Confidence 999999999999 4578888889999999999999999999999999999999988788999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCC----CCChhHHHHHHHHHHHHHHHHhhcCChHH
Q 003214 556 ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADED----ADDPGALAAVGCLRAISTILESVSRLPHL 631 (838)
Q Consensus 556 ~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~----~~~~~~~~~~~~l~~i~~i~~~~~~~~~~ 631 (838)
+.+.+.++|+++|+.|++++.||+++++..|+.+|+++..+.-++++ .-||+.+.+.|+++++.+++.+++..|.+
T Consensus 555 eiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~v 634 (970)
T COG5656 555 EIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLV 634 (970)
T ss_pred cchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 99999999999999999999999999999999999998754333321 23578999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhH-hhhhhhhhhhhhhhhccCc
Q 003214 632 FVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGT 710 (838)
Q Consensus 632 ~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~-~~~l~~~~~~L~~~i~~~~ 710 (838)
...++..++|+++.++.++..+|+.++++++.+.+...+.++|.+|.+|..+.++..+.+ .+|+.+....++||+.+|+
T Consensus 635 Lk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 635 LKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999976544 4999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-cccchHHHHHHHHHHHhh-hhhhHHHHHH
Q 003214 711 AHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRR-AEKSYLKCLL 788 (838)
Q Consensus 711 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~-~~~~l~~il~~~l~~l~~-~~~~~~~~~~ 788 (838)
.+|. +++.|++.++.+..+++.++.....|...+|++++.++.++++. .+.++|-+++.+-..+.. .+.+...+..
T Consensus 715 ~ef~--~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~a 792 (970)
T COG5656 715 TEFM--DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYA 792 (970)
T ss_pred cccc--cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhH
Confidence 9988 57789999999999999876554466789999999999999986 678999777777655544 4666788899
Q ss_pred HHHHHHhhccChHHHHHHHHhcCchHHHHHHHHHhhhhhhhcCccccC
Q 003214 789 VQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNF 836 (838)
Q Consensus 789 l~v~~~~~~~~~~~~~~~L~~~~~~~~~~~~w~~~~~~~~~~~~rK~~ 836 (838)
+.++.++++++|..++++|+..|++..||.+|+.+.++|++.|++|+.
T Consensus 793 leliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ipkfkrvhdkKLs 840 (970)
T COG5656 793 LELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIPKFKRVHDKKLS 840 (970)
T ss_pred HHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCcchhhhhhhHhH
Confidence 999999999999999999999999999999999999999999999973
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-79 Score=646.34 Aligned_cols=791 Identities=20% Similarity=0.323 Sum_probs=664.7
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
|.++|.+.|.++++|||++|+.||+.|++++.++||...+++++.+.+.|..+|..|+++|||+|+++|...++. +..+
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-~~~i 81 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-PIKI 81 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999987654 5679
Q ss_pred ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc--
Q 003214 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF-- 156 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~-- 156 (838)
.+++|..||..++.++.+++..|+.|++++++.|+++|||+.||+|+++++..++++ .+.+.|.+-+.++|+||+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999999999999999999988 568889999999999986
Q ss_pred CCccCcchHHHHHHHHhHHHHHHHHHHhcc---cCCc----hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003214 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQI---VNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (838)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~---~~~~----~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (838)
++++...+++.++..+-.++..+|....+. ..++ ..-...+.+++|+|++++..++|++++ ++++.||+.|
T Consensus 162 rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFE--dnm~~wM~~F 239 (960)
T KOG1992|consen 162 RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFE--DNMKTWMGAF 239 (960)
T ss_pred ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHH--hhHHHHHHHH
Confidence 446656667777776666677776554321 1111 124567889999999999999999998 7999999999
Q ss_pred HHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003214 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 (838)
Q Consensus 230 ~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~ 309 (838)
++.++...|.. .+|++ +...+.++|..+|++++.+..+|. ++ | .++++.|+...|+++...+
T Consensus 240 ~k~l~~~~p~l--e~~~e--e~~~l~~lka~ICEi~~LY~~kYe------Ee-------f-~~fl~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 240 HKLLTYDNPLL--ESDEE--EATVLDKLKAQICEIFNLYATKYE------EE-------F-QPFLPDFVTATWNLLVSTS 301 (960)
T ss_pred HHHHhccCccc--ccCcc--cccHHHHHHHHHHHHHHHHHHhhH------HH-------H-HhhHHHHHHHHHHHHHhcC
Confidence 99999877743 23333 234457889999999999999883 22 2 3477899999999997754
Q ss_pred CCcccCHHHHHHHHHHHHhhcCcchhhhhc--hhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHH
Q 003214 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 387 (838)
Q Consensus 310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r 387 (838)
.. ...|-++..+++|++.++..+.....+ .+.+.++++.+++|++.++++|+|.+||||.||+|++.++ .|.+|+|
T Consensus 302 ~~-~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEG-sDvdTRR 379 (960)
T KOG1992|consen 302 PD-TKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEG-SDVDTRR 379 (960)
T ss_pred CC-ccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhccc-CCcchhH
Confidence 32 346789999999999998766554455 3568999999999999999999999999999999999986 4688999
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhh-------cCCcchHHHHHH
Q 003214 388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK-------QTEPYKSELERM 460 (838)
Q Consensus 388 ~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~-------~~~~~~~~~~~~ 460 (838)
++|.++++.|++++...+.+.+.+.++..+++|+.+|. .+|+.+|.+++++.+++-.-. ..++ ..++..|
T Consensus 380 R~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS--~nWk~kd~aiyL~talaik~~t~~~Gvtstn~-lvdv~~F 456 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPS--GNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE-LVDVVDF 456 (960)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCC--ccccccchhhhhhHHHHhhcchhhcceeeccc-cccHHHH
Confidence 99999999999999888888888999999999999986 599999999999999987632 2232 2467889
Q ss_pred HhhcccccccC----CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc----
Q 003214 461 LVQHVFPEFSS----PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---- 532 (838)
Q Consensus 461 l~~~v~p~l~~----~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~---- 532 (838)
+.+.++|+|.+ ++|+||+.++..+--|.... .++++-.+++.++.+|..+..+|..+||.|+..++..++
T Consensus 457 f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql--~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 457 FANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL--GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HHHHhhHHhccCccccccchhhcccceeeeecccC--ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccc
Confidence 99999999986 47999999999884444322 337789999999999999899999999999999886654
Q ss_pred ---cccccccchHHHHHHHHHHhhh---hchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 003214 533 ---DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 606 (838)
Q Consensus 533 ---~~~~l~p~l~~il~~L~~ll~~---~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (838)
.++.+.|++..++..|+.-++. .+++.++.++..++....+.+.|+++.++..|.+..++..++ | .
T Consensus 535 ~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN----P----s 606 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKN----P----S 606 (960)
T ss_pred cccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC----C----C
Confidence 4678999999999999977664 355568888888888888889999999999999876555443 3 2
Q ss_pred hHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC-CCCCHhhhHhHHHHH
Q 003214 607 GALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMM 684 (838)
Q Consensus 607 ~~~~~~~~l~~i~~i~~~~~-~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~-~~~~~~l~~l~~~l~ 684 (838)
++.+-++.+|+++.+++..+ .+|....+++..++|++..++.+|..+|+++++++++.++..+ +++++..+.+||.++
T Consensus 607 ~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 607 NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 35677899999999999875 4677788899999999999999999999999999999999876 458889999999887
Q ss_pred HHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-ccc
Q 003214 685 EALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDH 763 (838)
Q Consensus 685 ~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~-~~~ 763 (838)
.=--.....++++++++|.+|+..|+..+.+. +.+..+++++++++.++..+. +++.++..|+.+++.. +.|
T Consensus 687 sp~lW~r~gNipalvrLl~aflk~g~~~~~~~---~~l~~iLGifqkLiaSka~Dh----~GF~LLn~i~~~~~~~~~~p 759 (960)
T KOG1992|consen 687 SPNLWKRSGNIPALVRLLQAFLKTGSQIVEAA---DKLSGILGIFQKLIASKANDH----HGFYLLNTIIESIPPNELAP 759 (960)
T ss_pred CHHHHhhcCCcHHHHHHHHHHHhcCchhhccc---ccchhHHHHHHHHhcCcccch----hHHHHHHHHHhcCCHhhhhH
Confidence 54223357799999999999999999987742 457889999999999887664 6999999999998875 789
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHhhccChHHHHHHHHhc--CchHHHH-HHHHHhhhhhhhcCcccc
Q 003214 764 WVEPYLRITVERLRRAEKSYLKCLLVQ-VIADALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVN 835 (838)
Q Consensus 764 ~l~~il~~~l~~l~~~~~~~~~~~~l~-v~~~~~~~~~~~~~~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~rK~ 835 (838)
++..|...+++|+++++++.+...++. +.+.++-+......+.++.+ |.+.+++ +.|+...+++.+.-+||.
T Consensus 760 y~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~~i~~~~~rk~ 835 (960)
T KOG1992|consen 760 YMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELPKIILRVDRKI 835 (960)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhccccchhhhhhhhHHH
Confidence 999999999999999877766655544 44455556777888888887 7899999 799999999999999995
No 4
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-77 Score=626.07 Aligned_cols=781 Identities=19% Similarity=0.281 Sum_probs=599.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhh
Q 003214 6 LALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (838)
Q Consensus 6 l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~ 85 (838)
++|+|+++.|||..++|.||++|++|+++|||...|..|..+++.+..+|++|+|+|||.|.++|+... ...+|+|+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~---~~sl~~EE 78 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNT---KMSLPPEE 78 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCC---cccCCHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999754 35799999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh-------hHHHHHHHHHHHHHHcccCC
Q 003214 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKS 158 (838)
Q Consensus 86 k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-------~~~~~L~~L~~i~~~~~~~~ 158 (838)
|..||.+++..+.++++++..|.|.++++|||-|||.+||+|++++.+.+++. ..++.|.+|+.++|.+.++|
T Consensus 79 K~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~R 158 (978)
T KOG1993|consen 79 KDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKR 158 (978)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999986 46999999999999998887
Q ss_pred -ccCcchHHHHHHHHhHHHHHHHHHH--------hcccCCc--hhHHHHHHHHHHHhHHhhhhcCCcccCC--hhhHHHH
Q 003214 159 -DEERTPVYRIVEETFHHLLNIFNRL--------VQIVNPS--LEVADLIKLICKIFWSSIYLEIPKQLLD--PNVFNAW 225 (838)
Q Consensus 159 -~~~~~~~~~~~~~~~p~l~~~~~~~--------~~~~~~~--~~~~~~~~~~lki~~~~~~~~~p~~~~~--~~~~~~~ 225 (838)
..+|+.+.+..+.+++.+..+.-+. ..++.+. ..+.+...+++|.+|+++.++..+...+ .+.+.++
T Consensus 159 L~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F 238 (978)
T KOG1993|consen 159 LLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQF 238 (978)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Confidence 6778888888888888554443221 1111111 2356777889999999987664332211 1233333
Q ss_pred HHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHH---HHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHH
Q 003214 226 MILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVH---ILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHL 302 (838)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~---~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~ 302 (838)
+..-...+-.... .+... ...+ .+.|.|.+ .+..++++. |..-.. . ...|..+..+.
T Consensus 239 ~e~~~~~~~~~~s----~~~~~--vk~d--i~ek~~i~l~K~l~~l~~rh--pfsF~~--~--------~~~~~~l~f~~ 298 (978)
T KOG1993|consen 239 LELHQRKLLSSLS----TGTQS--VKSD--ILEKFCIKLMKVLAFLFNRH--PFSFSF--Y--------SPCPVKLEFSI 298 (978)
T ss_pred HHHHHHHHHhhcc----cccch--hhhH--HHHHHHHHHHHHHHHHhcCC--Cccccc--c--------cccceeeehhh
Confidence 3322111111111 11000 0000 12233333 333333331 110000 0 00111111111
Q ss_pred HHHHhh-------hCCcccCHHHHHHHHHHHHhhcCcc-------------------h----hh-hhc-hhhHHHHHHHh
Q 003214 303 NLLNRI-------RVGGYLPDRVTNLILQYLSNSISKN-------------------S----MY-NLL-QPRLDVLLFEI 350 (838)
Q Consensus 303 ~~l~~~-------~~~~~~~~~~~~~~l~fl~~~~~~~-------------------~----~~-~~~-~~~l~~li~~~ 350 (838)
..+... ......-++...+|+..+..++..+ . .+ +.+ .+.+..++..+
T Consensus 299 ~yIf~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~L 378 (978)
T KOG1993|consen 299 DYIFDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLL 378 (978)
T ss_pred hhhhcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHH
Confidence 111110 0000011233444444443221100 0 00 111 35578889999
Q ss_pred HhccccCChhhHhhhhcCHHHHHHHhccc-ccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccC-CCCCCc
Q 003214 351 VFPLMCFNDNDQKLWDEDPHEYVRKGYDI-IEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDE-TPVEYK 428 (838)
Q Consensus 351 i~~~l~~~~~d~e~w~~Dp~efi~~~~d~-~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~-~~~~~~ 428 (838)
+.+|+.+|++|+|+|.+||++|+.++... | .|..|+||+.++..+.+.|++-.+++++.++.+..+...- ..++.+
T Consensus 379 vt~YflLt~~eLEeW~~dPE~~~~Eq~~~dw--ey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~ 456 (978)
T KOG1993|consen 379 VTHYFLLTEEELEEWTQDPEGWVLEQSGGDW--EYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLT 456 (978)
T ss_pred HHHHHhcCHHHHHHHhcChHHhhhhcccccc--eeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHH
Confidence 99999999999999999999999987642 3 2899999999999999999988888888888766553311 112345
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCC---CcchhhHHHHHHHhhhccccCChhHHHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSV 505 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~---~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l 505 (838)
+...|||++.++|..++.+.+.- ++..|+.+.++|++... ..++|+|.+|++|+|.++.++. +..+.+|.++
T Consensus 457 a~L~KDAiYaa~g~~a~~l~~~~----dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~-e~k~l~Y~a~ 531 (978)
T KOG1993|consen 457 ALLLKDAIYAAFGLAAYELSNIL----DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKL-ELKPLLYCAF 531 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechH-hHHHHHHHHH
Confidence 78899999999999999998764 46799999999999854 4689999999999999876543 6779999999
Q ss_pred HhcCCCC-CCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchh----hHHHHHHHHHHhhcccchhhH
Q 003214 506 VSGLRDP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENE----DLVFTLETIVDKFGEEMAPYA 579 (838)
Q Consensus 506 ~~~l~~~-~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~----~l~~~l~~iv~~~~~~i~p~~ 579 (838)
++.++|. |.+||++|+.+++..+++++ .++.+.||++.+...++.+++.++.. .++.+|+.++.+.++.|.||+
T Consensus 532 lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~ 611 (978)
T KOG1993|consen 532 LNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA 611 (978)
T ss_pred HHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999986 99999999999999999999 89999999999999999999987543 288999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh---hhHHH
Q 003214 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG---QEVFE 656 (838)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~---~~~~~ 656 (838)
..+++.+.. +|+..+. .+++++.++.++..++.++|..+..+. +.++|+++.+.++.+ ..+.|
T Consensus 612 ~~ivq~lp~----LWe~s~~-------e~lLr~alL~~L~~lV~alg~qS~~~~---~fL~pVIel~~D~~sP~hv~L~E 677 (978)
T KOG1993|consen 612 STIVQYLPL----LWEESEE-------EPLLRCALLATLRNLVNALGAQSFEFY---PFLYPVIELSTDPSSPEHVYLLE 677 (978)
T ss_pred HHHHHHHHH----HHhhhcc-------CcHHHHHHHHHHHHHHHHhccCCccch---HHHHHHHHHhcCCCCCceeehhh
Confidence 999988886 7776543 268899999999999999998776544 889999999988755 47899
Q ss_pred HHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCC
Q 003214 657 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADK 736 (838)
Q Consensus 657 ~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~ 736 (838)
|++++|..++.+.+.++|.+..+||.+...++. .+++++.++.++++|+..+...|++ .|...+++.+.+.+.+.
T Consensus 678 DgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~----~y~~~i~k~~~~~l~dv 752 (978)
T KOG1993|consen 678 DGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLN----DYAFGIFKKLNDLLDDV 752 (978)
T ss_pred hHHHHHHHHHhcccccCHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHH----HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999854 7899999999999999999999996 69999999999998643
Q ss_pred CCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhhccChHHHHHHHHhcC---c
Q 003214 737 NLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLR-RAEKSYLKCLLVQVIADALYYNSSLTLSILHKLG---V 812 (838)
Q Consensus 737 ~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~~---~ 812 (838)
+ ++....++++++.+++.-+---.-+.++++..++..+. +.+.|.+...++.|++|..+.||+.+..+|+..+ .
T Consensus 753 r--~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~ 830 (978)
T KOG1993|consen 753 R--NEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDI 830 (978)
T ss_pred h--HHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHH
Confidence 3 33356788888888876441111245566666766664 3689999999999999999999999999999986 4
Q ss_pred h-HHHHHHHHHhhhhhhhcCccccCC
Q 003214 813 A-TEVFNLWFQMLQQVKKNGLRVNFK 837 (838)
Q Consensus 813 ~-~~~~~~w~~~~~~~~~~~~rK~~~ 837 (838)
+ ..++..|+..++++.++.+||+++
T Consensus 831 ~~~~li~~WI~~~~~I~~~k~rKl~~ 856 (978)
T KOG1993|consen 831 LIAMLIGNWILLFDHINHPKDRKLNT 856 (978)
T ss_pred HHHHHHHHHHHHcccCCCHHHhhHHH
Confidence 4 578899999999999999999974
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=8.8e-66 Score=551.88 Aligned_cols=768 Identities=18% Similarity=0.269 Sum_probs=585.6
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC--CCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP--NEQ 78 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~--~~~ 78 (838)
|+.+.|.++|.+++|||+++|.+||.+|++++..+||..+|.+++.++..+.+.||.|.|+||++|.+||+...+ +.+
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 677899999999999999999999999999999999999999999999899999999999999999999998765 234
Q ss_pred CCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcc
Q 003214 79 QKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (838)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~ 155 (838)
...+++.|..||+.|++++.+++++||+..+++++.||+.|||++||++++.+..+++++ .++++|.+|.++..+.-
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999999999976 68999999999998651
Q ss_pred cCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCC-ccc-------CChhhHHHHHH
Q 003214 156 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIP-KQL-------LDPNVFNAWMI 227 (838)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p-~~~-------~~~~~~~~~~~ 227 (838)
.+++..+.+...|.+..+|..... ++. .........|.|++|..+--+ +.. .-.+.+.+||.
T Consensus 161 ------~ee~~~~~~~~l~~m~~~f~~~~~---~s~-~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 161 ------VEEMFFVGPVSLAEMYRIFALTIV---YSI-ITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred ------HHHHhcccccchhhhhhhhhhccc---cch-hHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223334445555555553321 111 111122225777776532100 000 00144566666
Q ss_pred HHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 003214 228 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 307 (838)
Q Consensus 228 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~ 307 (838)
.+.+.++...+ + -|..+..+.++++.+++.|.+ +..+ ++..++...|+.++.
T Consensus 231 ~l~h~l~~~~g--------~------~~~~~~eilk~~t~l~~nfp~--~~~~------------~~~~~~~~vw~~~~~ 282 (1005)
T KOG2274|consen 231 ILEHPLQRNDG--------S------DFSLRMEILKCLTQLVENFPS--LINP------------FMMGMFSIVWQTLEK 282 (1005)
T ss_pred HHhhhhccccc--------c------hHHHHHHHHHHHHHHHHhhHH--hhhH------------HHHhhhhHHHHHHHH
Confidence 66555554221 1 146778899999999988743 2122 222333334444332
Q ss_pred h-----------hC------C-----cccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhh
Q 003214 308 I-----------RV------G-----GYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLW 365 (838)
Q Consensus 308 ~-----------~~------~-----~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w 365 (838)
. .+ . .+..+.++.+.++|++.+++.....+-++..+.+++..++ -+++++++.++.|
T Consensus 283 ~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w 361 (1005)
T KOG2274|consen 283 ILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVW 361 (1005)
T ss_pred HHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHH
Confidence 1 00 0 1123578899999999999888877777778888888766 5789999999999
Q ss_pred hcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCC--CCCCcchhhHhHHHHHHHHH
Q 003214 366 DEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDET--PVEYKPYRQKDGALLAIGAL 443 (838)
Q Consensus 366 ~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~--~~~~~~~~~~ea~l~~lg~i 443 (838)
..||++|+.++++. ++.|.++.+++..+...+|...+.++.+.....++...++ .++..+|+..++++.+.+..
T Consensus 362 ~sD~~~fV~dEd~~----~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~ 437 (1005)
T KOG2274|consen 362 TSDVNQFVADEDDG----YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESV 437 (1005)
T ss_pred hccHHHhhccCCCC----chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc
Confidence 99999999887543 7788889999999999999888888888766655442221 12235899999999999877
Q ss_pred HHHhhcCCcchHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHH
Q 003214 444 CDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSV 521 (838)
Q Consensus 444 ~~~l~~~~~~~~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~V~~~A~ 521 (838)
... +..++.-+.+...+...+. +..|++-.||+|++++|++....+++.+..++...++.+. +..+++|+.|+
T Consensus 438 ~~~-----~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~ 512 (1005)
T KOG2274|consen 438 RID-----DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAV 512 (1005)
T ss_pred ccC-----cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHH
Confidence 622 1222333334444444444 3578888899999999987544466778888888888886 56677999999
Q ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhh--cccchhhH-HHHHHHHHHHHHHHHhccc
Q 003214 522 FALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF--GEEMAPYA-LGLCQNLAAAFWRCMNTAE 598 (838)
Q Consensus 522 ~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~--~~~i~p~~-~~l~~~L~~~~~~~~~~~~ 598 (838)
+++..++ ....+.|..|.+++.|.++....+.+.+..+++++...+ ..+.+--. ..+++.....|.+ ..
T Consensus 513 ~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k----~s 584 (1005)
T KOG2274|consen 513 RAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK----YS 584 (1005)
T ss_pred HHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH----hc
Confidence 9999988 268899999999999999999988887666666654433 22221111 1122222222222 33
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh----hhHHHHHHHHHHHhhhcCCC-CC
Q 003214 599 ADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG----QEVFEEVLEIVSYMTFFSPT-IS 673 (838)
Q Consensus 599 ~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~----~~~~~~~l~ll~~~~~~~~~-~~ 673 (838)
+|| ......-+++..+++ ..++++++.+.++|.+-.+++.+. ..+..-+++++++++++.|+ ++
T Consensus 585 ~DP-------~V~~~~qd~f~el~q----~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 585 EDP-------QVASLAQDLFEELLQ----IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred CCc-------hHHHHHHHHHHHHHH----HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 454 223334445555554 457788899999999999998766 68899999999999999854 44
Q ss_pred Hhh-hHhHHHHHHH-HhhhHhhhhhhhhhhhhhhhccCcccccccCCch--HHHHHHHHHHHHhcCCCCCCCccCchhHH
Q 003214 674 LEM-WSLWPLMMEA-LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD--YQQSLWSMVSSIMADKNLEDGDIEPAPKL 749 (838)
Q Consensus 674 ~~l-~~l~~~l~~~-~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~l 749 (838)
..+ -..||.+.++ +++++...++..-++|++|+..+.+++++|++.+ .++.++.+..++|+ +..+++.+.++|++
T Consensus 654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p~~sds~a~~VG~l 732 (1005)
T KOG2274|consen 654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-PETSDSAAAFVGPL 732 (1005)
T ss_pred HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-CccchhHHHHHhHH
Confidence 444 3789999999 6778888999999999999999999999997653 36799999999996 66788888899999
Q ss_pred HHHHHHHcccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHHHHHHHHhc------CchHHHHHHHHHh
Q 003214 750 IEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKL------GVATEVFNLWFQM 823 (838)
Q Consensus 750 l~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~------~~~~~~~~~w~~~ 823 (838)
+..++.+++..+++-+..|+.+++.||+..++..+.++++.|||.+.+.++++++++|.+. .+++.+|..|+++
T Consensus 733 V~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~sr 812 (1005)
T KOG2274|consen 733 VLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSR 812 (1005)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999995 2789999999999
Q ss_pred hhhhhhcCccccC
Q 003214 824 LQQVKKNGLRVNF 836 (838)
Q Consensus 824 ~~~~~~~~~rK~~ 836 (838)
+..|.|.|++|+.
T Consensus 813 qhl~~g~ye~kv~ 825 (1005)
T KOG2274|consen 813 QHLYFGEYEGKVS 825 (1005)
T ss_pred hhhhhhhhhchhh
Confidence 9999999999985
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-55 Score=454.23 Aligned_cols=732 Identities=18% Similarity=0.239 Sum_probs=566.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhc-CcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDN-NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 3 ~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~-~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
++|+.++|+++.|||+++|+.+...|.++...|+|..+|..|+.+. +.+..+|.+|+..|||.++.+|.. +
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~--------~ 83 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNS--------I 83 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccC--------C
Confidence 5799999999999999999999999999999999999999999753 568899999999999999999996 7
Q ss_pred ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccC-
Q 003214 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK- 157 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~- 157 (838)
+.+.+.+||+..+.++.++++.||...+.+|+.|+...+-..||+++|.+.+++.++ ..+|++.+|.+||++-.-.
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL 163 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH
Confidence 889999999999999999999999999999999999988899999999999999988 4699999999999875321
Q ss_pred -CccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003214 158 -SDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (838)
Q Consensus 158 -~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (838)
++-..+++ +.+.|.+++++.+. +..++..+++|.+..+. ..+..+. .+++.+++.+.+.-
T Consensus 164 ds~~~~rpl----~~mipkfl~f~~h~---------spkiRs~A~~cvNq~i~-~~~qal~--~~iD~Fle~lFala--- 224 (885)
T KOG2023|consen 164 DSDVLTRPL----NIMIPKFLQFFKHP---------SPKIRSHAVGCVNQFII-IQTQALY--VHIDKFLEILFALA--- 224 (885)
T ss_pred hhhcccCch----HHhHHHHHHHHhCC---------ChhHHHHHHhhhhheee-cCcHHHH--HHHHHHHHHHHHHc---
Confidence 11112334 44567777767542 35789999999986542 1222222 34455554443322
Q ss_pred CCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003214 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (838)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (838)
.|++. .++|.+++.+.-+.+.-.++ ..++++.+++.+++..+. .++
T Consensus 225 -------nD~~~-------eVRk~vC~alv~Llevr~dk--------------l~phl~~IveyML~~tqd------~dE 270 (885)
T KOG2023|consen 225 -------NDEDP-------EVRKNVCRALVFLLEVRPDK--------------LVPHLDNIVEYMLQRTQD------VDE 270 (885)
T ss_pred -------cCCCH-------HHHHHHHHHHHHHHHhcHHh--------------cccchHHHHHHHHHHccC------cch
Confidence 22222 58899999988777652211 224677888888765432 356
Q ss_pred HHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHH-HH-------HH--------------
Q 003214 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPH-EY-------VR-------------- 374 (838)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~-ef-------i~-------------- 374 (838)
++...|.|||.+.++.+-....+.|++..++..+ ...|.++++|+-..+++.+ ++ ++
T Consensus 271 ~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL-l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~ 349 (885)
T KOG2023|consen 271 NVALEACEFWLALAEQPICKEVLQPYLDKLIPVL-LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGED 349 (885)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH-HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccc
Confidence 7899999999999999977788999999998864 4889999998877662222 11 10
Q ss_pred --Hh--c-c--cccc---cCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHH
Q 003214 375 --KG--Y-D--IIED---LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 444 (838)
Q Consensus 375 --~~--~-d--~~~d---~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~ 444 (838)
++ + | +.+| .|+.|.|++..|+.++..+|+++++.++.++.+.+.+ ++|+.|||+..|+|++|
T Consensus 350 ~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--------~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 350 ADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--------EEWKVREAGVLALGAIA 421 (885)
T ss_pred cccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------chhhhhhhhHHHHHHHH
Confidence 00 0 1 1111 3899999999999999999999999999999998875 58999999999999999
Q ss_pred HHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHH
Q 003214 445 DKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVF 522 (838)
Q Consensus 445 ~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~V~~~A~~ 522 (838)
+++.+. +...+.. +..++++.|.+..|.+|+-.||++|||+.|.+.++ +.+.+++..++..+-|++..|+.+||.
T Consensus 422 EGcM~g--~~p~Lpe-Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcs 498 (885)
T KOG2023|consen 422 EGCMQG--FVPHLPE-LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACS 498 (885)
T ss_pred HHHhhh--cccchHH-HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999874 2223333 33556667888999999999999999999876543 678999999999999999999999999
Q ss_pred HHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccch-h-hHHHHHHHHHHHHHHHHhcc
Q 003214 523 ALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMA-P-YALGLCQNLAAAFWRCMNTA 597 (838)
Q Consensus 523 al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~-p-~~~~l~~~L~~~~~~~~~~~ 597 (838)
|+..+-++. .+.+.||+..|+++|....+.+.... +.++++++.+..|..+. | |..-+++.|++ .|+.-
T Consensus 499 AfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~----KW~~l 572 (885)
T KOG2023|consen 499 AFATLEEEA--GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIE----KWELL 572 (885)
T ss_pred HHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHH----HHHhc
Confidence 999998885 58999999999999999999876554 78999999999887764 3 55555555554 78764
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHhhHHHHHHHHhcc------------ChhhHHHHHHHHHHH
Q 003214 598 EADEDADDPGALAAVGCLRAISTILESVSRLP-HLFVQIEPTLLPIMRRMLTT------------DGQEVFEEVLEIVSY 664 (838)
Q Consensus 598 ~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~-~~~~~l~~~~~p~i~~~l~~------------~~~~~~~~~l~ll~~ 664 (838)
+++ |+.+ .-+++|++++..++++.- .....+.++++.++.++++. ...+|+-.++++++.
T Consensus 573 sd~-----DKdL--fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SG 645 (885)
T KOG2023|consen 573 SDS-----DKDL--FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSG 645 (885)
T ss_pred Ccc-----cchH--HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhH
Confidence 432 3444 468999999999997631 12233456777777766442 124788899999999
Q ss_pred hhhcCCC-CCHhhh--HhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCC
Q 003214 665 MTFFSPT-ISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 741 (838)
Q Consensus 665 ~~~~~~~-~~~~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~ 741 (838)
+.+..+. +.|-+. .+...++.|..+...++.++.+.+|........+.+. +++..++.+++.-++.+. .+
T Consensus 646 LaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-----p~~~~fl~~lg~Nl~~~~--is 718 (885)
T KOG2023|consen 646 LAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-----PNLADFLPILGANLNPEN--IS 718 (885)
T ss_pred HHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHhhcCChhh--ch
Confidence 9987543 444332 4677788888776788999999999888888777766 677888877776665332 34
Q ss_pred ccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhhccChHHHHHHHHhcCchHHHHHHH
Q 003214 742 DIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE-KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLW 820 (838)
Q Consensus 742 ~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~~~~~~~~~~w 820 (838)
.+..|++-++.+..+++....+++.+++..++..++.+. .+++.-..-..+.|+-+++|+.+-.. ++.|++.|
T Consensus 719 v~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~------l~~f~~pW 792 (885)
T KOG2023|consen 719 VCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPH------LDSFMRPW 792 (885)
T ss_pred HHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchh------HHHHHHHH
Confidence 467899999999999999889999999999999888754 44455555556778888999988875 56899999
Q ss_pred HHhhhhhhhcCcc
Q 003214 821 FQMLQQVKKNGLR 833 (838)
Q Consensus 821 ~~~~~~~~~~~~r 833 (838)
|..+.+++.+.||
T Consensus 793 c~sl~~i~DneEK 805 (885)
T KOG2023|consen 793 CTSLRNIDDNEEK 805 (885)
T ss_pred HHHhcccccchhH
Confidence 9999999888876
No 7
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.3e-51 Score=439.83 Aligned_cols=776 Identities=18% Similarity=0.225 Sum_probs=538.2
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (838)
|+.-..+..+..+.|+|+..+|.||+.|++|++++||...|.+|..+...+.++|+.|+|+|||+|++||++..+ ..
T Consensus 1 M~~~~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~---~~ 77 (947)
T COG5657 1 MEDLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENG---NS 77 (947)
T ss_pred CCchHHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcc---cC
Confidence 776777788899999999999999999999999999999999999998899999999999999999999997442 34
Q ss_pred CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccC
Q 003214 81 ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK 157 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~ 157 (838)
+.++++..||+.++.++.++++.+..|.|.+++.||+.|||++||+|++++...++++ ...+.|.++++++|+++.
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~- 156 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR- 156 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh-
Confidence 6667788999999999999999999999999999999999999999999999999987 568999999999999862
Q ss_pred CccCcchHHHHHHHHhHHHHHHHHHHhcccC----Cc---hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHH
Q 003214 158 SDEERTPVYRIVEETFHHLLNIFNRLVQIVN----PS---LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFL 230 (838)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~----~~---~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~ 230 (838)
....+..+.++.+.+.+.+.++.-+....++ .+ ....++....+|.|+.....+.|++++ +++..||+.|.
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfE--d~l~~~m~~F~ 234 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFE--DNLDKFMEHFC 234 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHH
Confidence 1334456667777776666665543332111 00 122333334445555555567787776 79999999999
Q ss_pred HHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhC
Q 003214 231 NVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV 310 (838)
Q Consensus 231 ~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~ 310 (838)
..++..-|. ...| ..+..-+.++|..++.+++.+..+|... | ..+.-.|++.+|..+....+
T Consensus 235 klls~~~~~--lq~~--~le~~~~~~l~~~i~e~f~ly~t~yp~~-------------i-t~li~dfv~~vw~~lttit~ 296 (947)
T COG5657 235 KLLSYSNPV--LQKD--CLEDCVYFKLKGSICEIFNLYTTKYPEV-------------I-TYLIYDFVEIVWNLLTTITR 296 (947)
T ss_pred HHHhhcchh--hhhh--hcccceeeeecccHHHHHHHHhhccHHH-------------h-hHHHHHHHHHHHHHHHhhcC
Confidence 999864331 1111 1111345678888888888887776421 1 11345678889999887543
Q ss_pred CcccCHHHHHHHHHHHHhhcC--cchhhhhchh----hHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccC
Q 003214 311 GGYLPDRVTNLILQYLSNSIS--KNSMYNLLQP----RLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLY 384 (838)
Q Consensus 311 ~~~~~~~~~~~~l~fl~~~~~--~~~~~~~~~~----~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~ 384 (838)
++..|.++..++.++..... .+.+.+.+.+ .+..++..++.|++++.++|+|.|++||.||+++...... .+
T Consensus 297 -~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dy-e~ 374 (947)
T COG5657 297 -PYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDY-EV 374 (947)
T ss_pred -ccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccc-hh
Confidence 46678888899999988887 4556555443 5788899999999999999999999999999997765321 26
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
..|.++++.+..+.+.+++-....+.. .+.+..+.|...+..+.++|++...|...+.+.. ..++..++.+.
T Consensus 375 ~vr~~~~~~l~~~f~~~~~i~~~~~~~----~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~----~~~~v~~~~~~ 446 (947)
T COG5657 375 NVRPCIENELKDLFDVFGRIAVGHELT----VIESEATTPNILDEARQLFAAYASFGLGVEAVNR----MVDFVKFLGSI 446 (947)
T ss_pred hhhHHHHHHHHHHHHHHhhHhHHHHHH----HHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHh
Confidence 789999999999999887544444444 5555555563345788899999888866665543 23567888899
Q ss_pred ccccccCC----C-cchhhHHHHHHHhhhccccCChhHHHHHH--HHHHhcCCCC-CCchHHHHHHHHHHHHHhcc-ccc
Q 003214 465 VFPEFSSP----V-GHLRAKAAWVAGQYAHINFSDQNNFRKAL--HSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLN 535 (838)
Q Consensus 465 v~p~l~~~----~-~~lr~ra~~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~-~~~V~~~A~~al~~~~~~~~-~~~ 535 (838)
..|++.++ + .++|+|+.+++..+.... ..+-.....+ +.....+.+. +..+-++...|....++++. ...
T Consensus 447 ~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~-~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~ 525 (947)
T COG5657 447 IYPDLLSPNEIIHLRILRSRIAYILTFRNQLD-SSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC 525 (947)
T ss_pred cCccccCcccCceeEEehhccchheechhhhh-hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc
Confidence 99998874 3 356777777777765432 2220011111 2233333332 34455667777777777776 233
Q ss_pred ccccchHHHHHHHHHHhhhhch----hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHH
Q 003214 536 EIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 611 (838)
Q Consensus 536 ~l~p~l~~il~~L~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (838)
...+.+++++-.+++++...+. +.++.+++.++..-++.+.|...++++.|.+ +|.....|| ..+.+.
T Consensus 526 ~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~----lv~~~~knp----s~p~~~ 597 (947)
T COG5657 526 SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDN----LVEINAKNP----SNPQFA 597 (947)
T ss_pred cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHH----HHHHHccCC----ccHHHH
Confidence 4445566666666666654432 3478889999999999999999999988876 454444455 224456
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh-hhHHHHHHHHHHHhhhcCCCCCHhhh-HhHHHHHHHHhh
Q 003214 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFSPTISLEMW-SLWPLMMEALAD 689 (838)
Q Consensus 612 ~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~-~~~~~~~l~ll~~~~~~~~~~~~~l~-~l~~~l~~~~~~ 689 (838)
+..++.|+.++..... ..+..+|.+...+.+.. .-+.+++.++|+.+++...+++...- ..+|.+...+..
T Consensus 598 h~~fe~I~al~~~~~~-------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q 670 (947)
T COG5657 598 HYTFEDIGALVFLKSG-------MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQ 670 (947)
T ss_pred HHHHHHHHHHHHhhhc-------ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhc
Confidence 7888888888776432 23445555555555542 23446666666666554332222221 123434333321
Q ss_pred --hHhh------hhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-
Q 003214 690 --WAID------FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ- 760 (838)
Q Consensus 690 --~~~~------~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~- 760 (838)
.+.+ .+..+...+++.+..+++.+-+ .+.+.++.++.+++..+..+ ..|..+..++..+..+
T Consensus 671 ~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~----s~~~~vL~i~~~ll~~e~~~-----~~~f~~~~~v~~l~~~~ 741 (947)
T COG5657 671 PSLATELLPTKLEILKSYRLLDNPILTTGYIFKS----SGFQPVLGILQYLLGSEPHD-----ALCFLNLTVVETLYLEN 741 (947)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhhhhcccccccc----cchhhhHHHHHHHHhcchHH-----HHHHhhHHHHHHhHHHH
Confidence 1222 3344555556655555554432 45677889999998754322 3555556666654433
Q ss_pred -cccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcc-----ChHHHHHHHHh-c-CchHHHHHHHHHhhhhhhhcCc
Q 003214 761 -VDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYY-----NSSLTLSILHK-L-GVATEVFNLWFQMLQQVKKNGL 832 (838)
Q Consensus 761 -~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~-----~~~~~~~~L~~-~-~~~~~~~~~w~~~~~~~~~~~~ 832 (838)
..+++..+.-.+++|+.+++++.+...++.+|.....- .++.++...++ . +...+++..|+--++.+..+.+
T Consensus 742 i~~~~v~~i~~lll~rl~ns~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il~~~~i~~~~d 821 (947)
T COG5657 742 IYEPYVNLIFVLLLSRLKNSKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWILGFDEIHDSKD 821 (947)
T ss_pred HHhhcHHHHHHHHHHHhhcccchHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHhceeeccchhccHHH
Confidence 56888888899999999999999988888887665433 24555555553 3 4457788999998888999999
Q ss_pred ccc
Q 003214 833 RVN 835 (838)
Q Consensus 833 rK~ 835 (838)
||+
T Consensus 822 rKi 824 (947)
T COG5657 822 RKI 824 (947)
T ss_pred HHH
Confidence 996
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-50 Score=444.51 Aligned_cols=671 Identities=19% Similarity=0.288 Sum_probs=478.7
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (838)
||.+++.|++++.+|||+++|++||+.|+.....+.-...|.+++.+ +.++++||+|||.+|+.+.++|+.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~-------- 71 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSR-------- 71 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhc--------
Confidence 89999999999999999999999999999776666677888888865 669999999999999999999996
Q ss_pred CChhhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc
Q 003214 81 ISQVDKDMVRDHILVFV-AQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l-~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~ 156 (838)
++++.|+.||+.|+.++ .++.+.||+++|.+|+.||+.++|++||+|++.+++..+|+ ..+.++++|..+...+.
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~- 150 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG- 150 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc-
Confidence 99999999999999987 57889999999999999999999999999999999999998 35889999999887652
Q ss_pred CCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003214 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (838)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (838)
+. ...+++.+..+|.+.+++++ ..++..+++.+.....+ ++..-.....+...++-++.+++..
T Consensus 151 ---~~-------~~~~~~~l~~lf~q~~~d~s-----~~vr~~a~rA~~a~~~~-~~~~~~~~~~~~~llP~~l~vl~~~ 214 (1075)
T KOG2171|consen 151 ---NT-------LQPHLDDLLRLFSQTMTDPS-----SPVRVAAVRALGAFAEY-LENNKSEVDKFRDLLPSLLNVLQEV 214 (1075)
T ss_pred ---cc-------cchhHHHHHHHHHHhccCCc-----chHHHHHHHHHHHHHHH-hccchHHHHHHHHHhHHHHHHhHhh
Confidence 11 12355666777777776432 22677777777665432 1100001256677777777777654
Q ss_pred CCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003214 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (838)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (838)
++ .+|++ .-+.+++.+..+.+.. |+ ++.+++..+++..+++..+ +.+.+
T Consensus 215 i~----~~d~~---------~a~~~l~~l~El~e~~--pk------------~l~~~l~~ii~~~l~Ia~n----~~l~~ 263 (1075)
T KOG2171|consen 215 IQ----DGDDD---------AAKSALEALIELLESE--PK------------LLRPHLSQIIQFSLEIAKN----KELEN 263 (1075)
T ss_pred hh----ccchH---------HHHHHHHHHHHHHhhc--hH------------HHHHHHHHHHHHHHHHhhc----ccccH
Confidence 43 22322 2266888888888763 33 3445666777777777644 35688
Q ss_pred HHHHHHHHHHHhhcCcchhh-hhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003214 317 RVTNLILQYLSNSISKNSMY-NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (838)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~-~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~ 395 (838)
.+++.+++|+.++.+.++.. +...+....++..++ . ++++.+ +| +||...++.+.++..++...|.+.++
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l-~--~mte~~-----~D-~ew~~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLL-A--MMTEEE-----DD-DEWSNEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHH-H--hcCCcc-----cc-hhhccccccccccccCcHHHHHHHHH
Confidence 99999999999998874432 222233334433322 2 233332 22 45544333222334678889999999
Q ss_pred HHHhhcc-cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCc
Q 003214 396 ELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG 474 (838)
Q Consensus 396 ~l~~~~~-~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~ 474 (838)
.++.+.| +.+++++++++.+++++ .+|+.|.|++++++++++++.+. ...++++++ +.|++.|+++||
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S--------~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il-~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQS--------TEWKERHAALLALSVIAEGCSDV--MIGNLPKIL-PIVLNGLNDPHP 403 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHcccHHH--HHHHHHHHH-HHHHhhcCCCCH
Confidence 9999986 78899999999999885 49999999999999999999874 345777776 579999999999
Q ss_pred chhhHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 003214 475 HLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (838)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~~---~~~~~~~~~l~~~l~~~-~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ 550 (838)
+||..||.++||+++ .|.+. .+...+.+.++..+.++ +++|+.+||.|+-+|.+++. ++.+.||++.+|+..+.
T Consensus 404 rVr~AA~naigQ~st-dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMST-DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLL 481 (1075)
T ss_pred HHHHHHHHHHHhhhh-hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHH
Confidence 999999999999986 44432 23566666888888875 56899999999999999995 99999999999997666
Q ss_pred Hhhhhch----hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 003214 551 LMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (838)
Q Consensus 551 ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~ 626 (838)
++...+. +.++.+|.++....++.+.||...+++.|.. .+.+..+ ++...++..+++|++.+..++|
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~----~L~n~~~-----~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN----FLQNADD-----KDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH----HHhCCCc-----hhhHHHHhhHHHHHHHHHHHhh
Confidence 6654332 3588999999999999999999999998886 3443332 1345678899999999999998
Q ss_pred CChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhh
Q 003214 627 RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYI 706 (838)
Q Consensus 627 ~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i 706 (838)
+.+ |....+.++.++...-. +...-..+....+...|.+++++++++...|++.+++++-.-.
T Consensus 553 ke~--F~~~a~eliqll~~~~~---------------~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 553 KEK--FLPLAEELIQLLLELQG---------------SDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred hhh--hhHhHHHHHHHHHhhcc---------------cchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 633 22222222222222210 0000012223345566666777776667777777777776655
Q ss_pred ccCcccccccCCc------hHHHHHHHHHHH-HhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHH
Q 003214 707 SRGTAHFLTCKEP------DYQQSLWSMVSS-IMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776 (838)
Q Consensus 707 ~~~~~~~l~~~~~------~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l 776 (838)
...++...-+... ......-..-.+ .++-.+..-.++..++..+..+...++..+.||+.+.+...+..+
T Consensus 616 ~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l 692 (1075)
T KOG2171|consen 616 RLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLL 692 (1075)
T ss_pred ccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 5555544321100 001111111111 122222223345678999999999999999999999888544444
No 9
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=2.1e-42 Score=362.73 Aligned_cols=350 Identities=25% Similarity=0.428 Sum_probs=271.3
Q ss_pred HHHHccc--CCccCcchHHHHHHHHhHHHHHHHHHHhc---ccCCc----hhHHHHHHHHHHHhHHhhhhcCCcccCChh
Q 003214 150 LSRKYEF--KSDEERTPVYRIVEETFHHLLNIFNRLVQ---IVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPN 220 (838)
Q Consensus 150 i~~~~~~--~~~~~~~~~~~~~~~~~p~l~~~~~~~~~---~~~~~----~~~~~~~~~~lki~~~~~~~~~p~~~~~~~ 220 (838)
|+|+||+ ++++...+++.+++.+..+++.++....+ +...+ ....+++++++|||++++++++|++++ +
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fe--d 78 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFE--D 78 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHH--H
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHH--H
Confidence 5777875 44666778888888888888888776542 11111 245678899999999999999999886 7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHH
Q 003214 221 VFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300 (838)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~ 300 (838)
++..||+.|..+|..+.|... ..|++ +..+++|+|+|++++++++.++|.+ +..++++.|++.
T Consensus 79 ~l~~wm~~f~~~L~~~~p~l~-~~d~~--e~~~l~kvK~~i~~~~~ly~~kY~e--------------~f~~~l~~fv~~ 141 (370)
T PF08506_consen 79 NLSEWMEIFHKYLTYPNPALE-EDDDD--EPGLLEKVKAWICENLNLYAEKYEE--------------EFEPFLPTFVQA 141 (370)
T ss_dssp THHHHHHHHHHHHH--SGGG--TT-SS--S--HHHHHHHHHHHHHHHHHHH-HH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccC-CCCcc--cccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 999999999999998776432 22222 4556899999999999999998842 223578899999
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhc--hhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcc
Q 003214 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYD 378 (838)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d 378 (838)
+|+++.....+ +..|.++..++.|++++++.+.....+ ++++.+|++++|+|+|+++++|+|.|++||.||+|++.|
T Consensus 142 vw~lL~~~~~~-~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e 220 (370)
T PF08506_consen 142 VWNLLTKISQQ-PKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE 220 (370)
T ss_dssp HHHHHTC--SS-GGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC
T ss_pred HHHHHHHhhhc-ccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc
Confidence 99999775433 446889999999999988765544344 679999999999999999999999999999999999988
Q ss_pred cccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC------c
Q 003214 379 IIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE------P 452 (838)
Q Consensus 379 ~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~------~ 452 (838)
+ +|.+|+|.||.+++..+++++++.+.+.+.+++++++++|.++|. .+|+.||+|++++|+++....... .
T Consensus 221 ~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~--~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 221 G-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPS--NNWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp S-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT--T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred c-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCc--ccHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 6 578999999999999999999998999999999999999888775 499999999999999998763211 1
Q ss_pred chHHHHHHHhhccccccc---CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 003214 453 YKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFAL 524 (838)
Q Consensus 453 ~~~~~~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al 524 (838)
-..++++|+.++|+|+|+ +.+|+||+|||+++..|.... +++.+..+++.++++|++++.+|+.+||.|+
T Consensus 298 ~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 298 ELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 134789999999999998 468999999999999998854 5578899999999999999999999999986
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-38 Score=337.24 Aligned_cols=686 Identities=16% Similarity=0.221 Sum_probs=447.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC---CCCC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP---NEQQ 79 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~---~~~~ 79 (838)
++.++|+.++|||++.|++||++|++++. .|+|...|.+++.+.+.+...|.+|++.|||.+..+-..... ..|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 46788999999999999999999999986 689999999999999999999999999999999754332211 1344
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh-h---HHHHHHHHHHHHHHc
Q 003214 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-Q---VYGALFVLRILSRKY 154 (838)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~-~---~~~~L~~L~~i~~~~ 154 (838)
.++.|.|.+||.+++..|..+.+...+..+.+++.||..+.| ++||+|+..++....+. . -.++|.++..+|++.
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 699999999999999999999999999999999999999999 78999999999998876 2 378899999999875
Q ss_pred ccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCc-ccCChhhHHHHHHHHHHHh
Q 003214 155 EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLDPNVFNAWMILFLNVL 233 (838)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~l 233 (838)
.. + .+.+..+.. |..++.-....+ .+..++..+++++..+.-+ .. -|.++..-...|+. +
T Consensus 162 ~p---e---vl~~~sN~i---LtaIv~gmrk~e----~s~~vRLaa~~aL~nsLef--~~~nF~~E~ern~iMqv----v 222 (859)
T KOG1241|consen 162 DP---E---VLEQQSNDI---LTAIVQGMRKEE----TSAAVRLAALNALYNSLEF--TKANFNNEMERNYIMQV----V 222 (859)
T ss_pred CH---H---HHHHHHhHH---HHHHHhhccccC----CchhHHHHHHHHHHHHHHH--HHHhhccHhhhceeeee----e
Confidence 21 1 222222222 222332222222 2456788889998765422 11 11221222222221 1
Q ss_pred cCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcc
Q 003214 234 ERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGY 313 (838)
Q Consensus 234 ~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~ 313 (838)
... .+..| .+++..++.+|.|+...|.. |..+|+ .+.++.+--..-. .
T Consensus 223 cEa----tq~~d---------~~i~~aa~~ClvkIm~LyY~--------------~m~~yM---~~alfaitl~amk--s 270 (859)
T KOG1241|consen 223 CEA----TQSPD---------EEIQVAAFQCLVKIMSLYYE--------------FMEPYM---EQALFAITLAAMK--S 270 (859)
T ss_pred eec----ccCCc---------HHHHHHHHHHHHHHHHHHHH--------------HHHHHH---HHHHHHHHHHHHc--C
Confidence 110 11112 26778899999999988742 222222 1223332211111 2
Q ss_pred cCHHHHHHHHHHHHhhcCcchh-h----hh----chh---h-HHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccc
Q 003214 314 LPDRVTNLILQYLSNSISKNSM-Y----NL----LQP---R-LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII 380 (838)
Q Consensus 314 ~~~~~~~~~l~fl~~~~~~~~~-~----~~----~~~---~-l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~ 380 (838)
..|++..+++|||+++++.+-- . .. ..| + ...-+.. +.|.+ ++.... .+.|+.
T Consensus 271 ~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~-v~P~L------l~~L~k-------qde~~d 336 (859)
T KOG1241|consen 271 DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD-VVPVL------LELLTK-------QDEDDD 336 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH-hhHHH------HHHHHh-------CCCCcc
Confidence 4789999999999987753210 0 00 011 0 1111111 11221 111111 111222
Q ss_pred cccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHH
Q 003214 381 EDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 460 (838)
Q Consensus 381 ~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~ 460 (838)
+|.|++..||+.+|.-+++..|+++++.+++|+.+.+++ ++|+.||++.+++|++-++-.... ...-+.+.
T Consensus 337 ~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~--------pdwr~reaavmAFGSIl~gp~~~~-Lt~iV~qa 407 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN--------PDWRNREAAVMAFGSILEGPEPDK-LTPIVIQA 407 (859)
T ss_pred cccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC--------cchhhhhHHHHHHHhhhcCCchhh-hhHHHhhh
Confidence 356999999999999999999999999999999998875 599999999999999988743211 11111222
Q ss_pred HhhcccccccCCCcchhhHHHHHHHhhhcccc---CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-----
Q 003214 461 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR----- 532 (838)
Q Consensus 461 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~----- 532 (838)
+ +.++.+..++.-++|..+.|++|+.++... .+++++...++.++..|+|. |.|...+|+|+..+.+.+.
T Consensus 408 l-p~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s 485 (859)
T KOG1241|consen 408 L-PSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVS 485 (859)
T ss_pred h-HHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccC
Confidence 2 223334567888999999999999987542 13467889999999999984 6789999999999997763
Q ss_pred --cccccccchHHHHHHHHHHhhhhc-hhh-----HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003214 533 --DLNEIRPILPQLLDEFFKLMNEVE-NED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDAD 604 (838)
Q Consensus 533 --~~~~l~p~l~~il~~L~~ll~~~~-~~~-----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~ 604 (838)
..+...|+.+.|++.|++.....+ ++. .+++|..+|....+.+.|....+......-+.+.++++..+.+|-
T Consensus 486 ~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr 565 (859)
T KOG1241|consen 486 NGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADR 565 (859)
T ss_pred CCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhH
Confidence 223456899999999999887754 332 678899999888777777554444433333333444222211110
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhcc-ChhhHHHHHHHHHHHhhhcC-CCCCHhhhHhHHH
Q 003214 605 DPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT-DGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPL 682 (838)
Q Consensus 605 ~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~-~~~~~~~~~l~ll~~~~~~~-~~~~~~l~~l~~~ 682 (838)
..-.-+..-+..++..+++.++.+- ....+.++-.+-.+++. ++.-..|++|--..+++.+. +.+-..+..+.|-
T Consensus 566 ~q~~eLQs~Lc~~Lq~i~rk~~~~~---~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~py 642 (859)
T KOG1241|consen 566 AQLNELQSLLCNTLQSIIRKVGSDI---REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPY 642 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc---hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 1111234456677888888776532 22335555555556655 44556677777777766543 3343444444444
Q ss_pred HHHHHhh-hHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCc
Q 003214 683 MMEALAD-WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV 761 (838)
Q Consensus 683 l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~ 761 (838)
+..-+.+ .+..+....+.++......=.+.++ +|...+++.+-+.|++++....-+..++...+.|...++.++
T Consensus 643 L~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~-----py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F 717 (859)
T KOG1241|consen 643 LLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL-----PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF 717 (859)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH
Confidence 4443311 1122222222222222222123455 788999999999999888777777889999999999999999
Q ss_pred ccchHHHHHHHHH
Q 003214 762 DHWVEPYLRITVE 774 (838)
Q Consensus 762 ~~~l~~il~~~l~ 774 (838)
.+|+..++..+-+
T Consensus 718 ~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 718 EPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887665544
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-33 Score=289.97 Aligned_cols=683 Identities=15% Similarity=0.190 Sum_probs=424.5
Q ss_pred CChHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC--
Q 003214 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-- 75 (838)
Q Consensus 1 MD~~~l~~~L~~-~ls~d~~~r~~Ae~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~-- 75 (838)
|...++.++.++ .+|||++.|..||.+|.++++. ..|...|.+++.+.+..+.+|..|++.|||.+..+-.....
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 666778777765 6999999999999999999974 46889999999998889999999999999999754332111
Q ss_pred -CCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh----hHHHHHHHHHH
Q 003214 76 -NEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLRI 149 (838)
Q Consensus 76 -~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~----~~~~~L~~L~~ 149 (838)
..|-.++.|.|++||.+.++.|..+.+.+.+..+..++.||+.+.| +.||+|+..++.....+ ....+|.++..
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 1344599999999999999999999999999999999999999999 78999999999998776 34667888888
Q ss_pred HHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003214 150 LSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (838)
Q Consensus 150 i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (838)
+|+.- ..+ .++...--.+..++.-...++ .+..++..++|++...... ...-+..++.-..+|+..
T Consensus 161 ~ces~------~Pe---~li~~sN~il~aiv~ga~k~e----t~~avRLaaL~aL~dsl~f-v~~nf~~E~erNy~mqvv 226 (858)
T COG5215 161 HCESE------APE---DLIQMSNVILFAIVMGALKNE----TTSAVRLAALKALMDSLMF-VQGNFCYEEERNYFMQVV 226 (858)
T ss_pred Hhhcc------CHH---HHHHHhhHHHHHHHHhhcccC----chHHHHHHHHHHHHHHHHH-HHHhhcchhhhchhheee
Confidence 88642 111 233333334444554444433 2456788899999763211 111122233334444432
Q ss_pred HHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003214 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 (838)
Q Consensus 230 ~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~ 309 (838)
...- +..|+ .+...++-+++|+...|.+ +++.+++..+-.+...
T Consensus 227 ceat--------q~~d~---------e~q~aafgCl~kim~LyY~------------------fm~~ymE~aL~alt~~- 270 (858)
T COG5215 227 CEAT--------QGNDE---------ELQHAAFGCLNKIMMLYYK------------------FMQSYMENALAALTGR- 270 (858)
T ss_pred ehhc--------cCCcH---------HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH-
Confidence 2211 11222 4667789999999887632 2233343333222111
Q ss_pred CCcccCHHHHHHHHHHHHhhcCcchhhhh----c-----hhh------HHHHHHHhHhccccCChhhHhhhhcCHHHHHH
Q 003214 310 VGGYLPDRVTNLILQYLSNSISKNSMYNL----L-----QPR------LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVR 374 (838)
Q Consensus 310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~----~-----~~~------l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~ 374 (838)
.-+...|++..+++|||+++++.+.--.. + ++| ...++..++ ..+ +.
T Consensus 271 ~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL-~LL----------~~------- 332 (858)
T COG5215 271 FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELL-SLL----------EK------- 332 (858)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHH-HHH----------Hh-------
Confidence 00123689999999999988764321110 0 011 112222111 111 10
Q ss_pred HhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcch
Q 003214 375 KGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 454 (838)
Q Consensus 375 ~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~ 454 (838)
...|..+|.|++..+|..+|.-.++..|+.++.++++|+.+.+++ ++|+.+|++.+|+|++.++-.+. ..
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~--------~~w~nreaavmAfGSvm~gp~~~--~l 402 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS--------ESWANREAAVMAFGSVMHGPCED--CL 402 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC--------chhhhHHHHHHHhhhhhcCccHH--HH
Confidence 011222356999999999999999999999999999999998874 59999999999999998763221 00
Q ss_pred H-HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 455 S-ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 455 ~-~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
. -+.+.+ +-+..+..++.-+++.++.|++|+.++.. ..+..++....++.+-.+.|. +.+....+++..+++++
T Consensus 403 T~~V~qal-p~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 403 TKIVPQAL-PGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDH 480 (858)
T ss_pred HhhHHhhh-HHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHh
Confidence 0 111111 12233345677899999999999998742 222345677777777777773 44667788999999988
Q ss_pred cc-----cccccccchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhccc--
Q 003214 531 CR-----DLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAE-- 598 (838)
Q Consensus 531 ~~-----~~~~l~p~l~~il~~L~~ll~~~~~~~-----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~-- 598 (838)
.. .+..+.|+-+.|++.|++..+...+|. .+++|++++....+.+.|....+......-+.+.++-.+
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~ 560 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI 560 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 64 356678899999999999877666653 788999999988887777544444333222222221111
Q ss_pred -CCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh-hhHHHHHHHHHHHhhhcC-CCCCHh
Q 003214 599 -ADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFS-PTISLE 675 (838)
Q Consensus 599 -~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~-~~~~~~~l~ll~~~~~~~-~~~~~~ 675 (838)
+-++ .-...-+...++..++.|++.-+.+- ...++.++.++-.+++... .-..++.+--++.+.... +.+...
T Consensus 561 l~~eD-~~~~~elqSN~~~vl~aiir~~~~~i---e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y 636 (858)
T COG5215 561 LATED-QLLVEELQSNYIGVLEAIIRTRRRDI---EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQY 636 (858)
T ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHhcCCCc---ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0010 00011123345555556665544321 2234555555555555432 222233333333332110 111111
Q ss_pred hhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHH
Q 003214 676 MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQ 755 (838)
Q Consensus 676 l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~ 755 (838)
...+.|-+.+.++..+.......+.++.....--...|. .|...+++.+.+.++++.....-+..+..+.+.|..
T Consensus 637 ~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~-----~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 637 ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN-----IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHH
Confidence 222223333333222223333333333222221122333 578888888888888776554446778899999999
Q ss_pred HcccCcccchHHHHHHH
Q 003214 756 NCKGQVDHWVEPYLRIT 772 (838)
Q Consensus 756 ~~~~~~~~~l~~il~~~ 772 (838)
+++..+.+|+..|+..+
T Consensus 712 aiga~F~~YL~~im~L~ 728 (858)
T COG5215 712 AIGANFESYLDMIMMLF 728 (858)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 99888888888876544
No 12
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.95 E-value=1.3e-26 Score=248.55 Aligned_cols=288 Identities=18% Similarity=0.315 Sum_probs=232.9
Q ss_pred cccccccchHHHHHHHHHHhhh---hchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 003214 533 DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (838)
Q Consensus 533 ~~~~l~p~l~~il~~L~~ll~~---~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (838)
.++++.|++++++++|+.++.. .++|.++.++..++..+++.+.|++..++++|..++..+.++ | .++.
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kN----P----snP~ 87 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKN----P----SNPR 87 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----------HH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCcc
Confidence 5789999999999999999986 567789999999999999999999999999999977666654 3 3478
Q ss_pred HHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCC--CCCHhhhHhHHHHHHH
Q 003214 610 AAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEA 686 (838)
Q Consensus 610 ~~~~~l~~i~~i~~~~~-~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~--~~~~~l~~l~~~l~~~ 686 (838)
+.++++|+++.+++... .+++....+++.++|++..+|++|..||+++++++++.++...+ ++++.++++||.++.-
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc
Confidence 89999999999999875 56777889999999999999999999999999999999998775 7888999999999876
Q ss_pred HhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-cccch
Q 003214 687 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWV 765 (838)
Q Consensus 687 ~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~-~~~~l 765 (838)
.-.....+++.+.++|.+|+.+++..+.+. +.++.++++|++++.++..+ ..++++++.|+.++|.. +++|+
T Consensus 168 ~lWe~~gniPalvrLL~a~i~k~~~~i~~~---~~l~~iLgvFQkLi~sk~~D----~~gF~LL~~iv~~~p~~~l~~yl 240 (435)
T PF03378_consen 168 ALWERRGNIPALVRLLQAYIKKDPSFIVAN---NQLEPILGVFQKLIASKAND----HYGFDLLESIVENLPPEALEPYL 240 (435)
T ss_dssp GGGGSTTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCH----HHHHHHHHHHHHHS-HHHHGGGH
T ss_pred chhccCCCcCcHHHHHHHHHHhCchhhcch---hhHHHHHHHHHHHHCCCCcc----hHHHHHHHHHHHHCCHHHHHHHH
Confidence 433356799999999999999999998754 68899999999999877644 36999999999999986 89999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH-HhhccChHHHHHHHHhc--CchHHHH-HHHHHhhhhhhhcCcccc
Q 003214 766 EPYLRITVERLRRAEKSYLKCLLVQVIA-DALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVN 835 (838)
Q Consensus 766 ~~il~~~l~~l~~~~~~~~~~~~l~v~~-~~~~~~~~~~~~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~rK~ 835 (838)
+.|+..+++||++++++.++..++.+++ .+..++|+.+++.++++ |+..+++ +.|++..+++.+..|||+
T Consensus 241 ~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi 314 (435)
T PF03378_consen 241 KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKI 314 (435)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHH
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhH
Confidence 9999999999998766666655554444 33457999999999998 7888888 689999999999999996
No 13
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-20 Score=204.83 Aligned_cols=639 Identities=14% Similarity=0.175 Sum_probs=405.0
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 3 LPSLALILQGALSP-NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 3 ~~~l~~~L~~~ls~-d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
.+.+.+++..++++ +.+....++++|++++..|.-|..-.+++.. +....+|.++|+.|.-+|.++|.+ +
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~--------~ 76 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEE--------C 76 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhcc--------C
Confidence 46788888899986 8888999999999999999999888888876 445677999999999999999996 8
Q ss_pred ChhhHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---------hHHHHHHHHHH
Q 003214 82 SQVDKDMVRDHILVFVA---QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---------QVYGALFVLRI 149 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~---~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---------~~~~~L~~L~~ 149 (838)
++++...++..++..+. ..++.|-+.++.+++..+-+.-|+.||+.+.+++..++.+ +....|..|..
T Consensus 77 ~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~ 156 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSF 156 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhcc
Confidence 99999999999998773 3467788899999999998899999999999999999875 11223344443
Q ss_pred HHHHcccCC------ccCcchHHHHHHHHhHHHHHHHHHHhcccCCch---hHHHHHHHHHHHhHHhhh-hcCCcccCCh
Q 003214 150 LSRKYEFKS------DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSL---EVADLIKLICKIFWSSIY-LEIPKQLLDP 219 (838)
Q Consensus 150 i~~~~~~~~------~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~---~~~~~~~~~lki~~~~~~-~~~p~~~~~~ 219 (838)
+-.+++... ...|.++.......++ ++...+..+.++. ...-....++||+..++. .+.|.
T Consensus 157 ~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~----l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~----- 227 (982)
T KOG2022|consen 157 MPAEFQHVTLPLTRRSVLRGELAKFSENVIS----LLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG----- 227 (982)
T ss_pred CcHhhhhccchhHHHHHHHHHHHHHHHHHhH----HHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc-----
Confidence 344443211 1122333333333444 3444443333222 223455678899988775 34442
Q ss_pred hhHHHHHHHHHHHhcCCCCCCC-------------CCCCh------------hhh--h-hccchhHHHHHHHHHHHHHHH
Q 003214 220 NVFNAWMILFLNVLERPVPSEG-------------EPADP------------EQR--K-SWGWWKVKKWTVHILNRLYTR 271 (838)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~-------------~~~d~------------~~~--~-~~~~~k~kk~~~~~l~~l~~~ 271 (838)
.....|.+..+..+.....+.. ...|. .+. . ...+|+.-.|.+.-.++.++.
T Consensus 228 ~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~ 307 (982)
T KOG2022|consen 228 MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQE 307 (982)
T ss_pred ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565555555542111000 00000 000 0 011223333333333333344
Q ss_pred hCCCCCCChhhHHHHH---HHHHHhHHHHHHHH------------HHHHHh-h-hCCc-ccCHHHHHHHHHHHHhhcCc-
Q 003214 272 FGDLKLQNPENRAFAQ---MFQKNYAGKILECH------------LNLLNR-I-RVGG-YLPDRVTNLILQYLSNSISK- 332 (838)
Q Consensus 272 ~~~~~~~~~~~~~f~~---~f~~~~~~~~~~~~------------~~~l~~-~-~~~~-~~~~~~~~~~l~fl~~~~~~- 332 (838)
+.+++...++...|.. .+..+++|..++.. .+.+.. . -.|. .+.+.+-...++||.+....
T Consensus 308 ~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei 387 (982)
T KOG2022|consen 308 EENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEI 387 (982)
T ss_pred HhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHH
Confidence 4333322222223332 23345666665554 111111 1 1222 34566777888999875321
Q ss_pred --------chhhhhch-hhHHHHHHHhHhccccC-ChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcc
Q 003214 333 --------NSMYNLLQ-PRLDVLLFEIVFPLMCF-NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG 402 (838)
Q Consensus 333 --------~~~~~~~~-~~l~~li~~~i~~~l~~-~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~ 402 (838)
+.-.+.++ +-+.++++..+ +.+.+ +++....|+.|.-| .+.+.|..-.+++...-...|
T Consensus 388 ~~~~~e~~~~~~~i~~~qIy~qlvei~l-~K~~~Ps~e~~~~W~S~s~e----------~F~~YR~diSD~~~~~Y~ilg 456 (982)
T KOG2022|consen 388 MQTINETQQIKKQILSQQIYAQLVEILL-KKLALPSKEIWLSWSSDSRE----------QFESYRKDISDLLMSSYSILG 456 (982)
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHH-HHhcCCCHHHhccCCcchHH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 11111233 66677776555 55655 55555667665321 234568888888888888888
Q ss_pred cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc--CCCcchhhHH
Q 003214 403 KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRAKA 480 (838)
Q Consensus 403 ~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~--~~~~~lr~ra 480 (838)
+..+..+..-+.+++.....+| ..|...|++++.+.++++.+.+.. ...+...+. +.+..+ ..+|-+-+.+
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p---~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~--~~asik~S~~n~ql~~Ts 529 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDP---DSLNRTEACIFQFQSVAEYLGETE--STWIPRLFE--TSASIKLSAPNPQLLSTS 529 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHH--hccccccccCChhHHHHH
Confidence 7666666666666666544333 479999999999999999987653 345555553 233333 2378889999
Q ss_pred HHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch---
Q 003214 481 AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN--- 557 (838)
Q Consensus 481 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~--- 557 (838)
.-.+|-++.+.-.+|..+...++.+++.|+.+. -..+|..+++.+|++| ++.+.||+.+++..+-..++....
T Consensus 530 s~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C--~~~L~py~d~~~a~~~e~l~~~~~~~S 605 (982)
T KOG2022|consen 530 SDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETC--PESLDPYADQFSAVCYEVLNKSNAKDS 605 (982)
T ss_pred HHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhh--hhhCchHHHHHHHHHHHHhcccccCch
Confidence 999999998865566778999999999997543 3557888899999998 699999999999999998876321
Q ss_pred --hhHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh-----
Q 003214 558 --EDLVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLP----- 629 (838)
Q Consensus 558 --~~l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~----- 629 (838)
..++..++.++.+.. +++..|...+++.+.+.+......+.+++ ++.+...-.+.+++++..++....
T Consensus 606 ~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~----e~~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 606 DRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ----ENHLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred HHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 236777888887776 45556888888877776555544444333 333444456888999988884210
Q ss_pred ------------HHHHHHHhhHHHHHHHHhccC--hhhHHHHHHHHHHHhhhcC-CCC-CHhhhHhHHHHHH
Q 003214 630 ------------HLFVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFFS-PTI-SLEMWSLWPLMME 685 (838)
Q Consensus 630 ------------~~~~~l~~~~~p~i~~~l~~~--~~~~~~~~l~ll~~~~~~~-~~~-~~~l~~l~~~l~~ 685 (838)
.....+...++|++.+++... ..++.+-++.+...-++.. +++ .|.+.++++-+.+
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR 753 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 022356788999999998743 3467777776665433322 334 3444455554433
No 14
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.92 E-value=1.5e-20 Score=195.55 Aligned_cols=533 Identities=14% Similarity=0.231 Sum_probs=312.1
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
|.+-+-++....+.+|...++||++-|.+++.+|+.|.-.-.|+.+ +..++.+..|...|...|++.|+ .+
T Consensus 12 diallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~-S~~pqskyiALs~LdklIttkWk--------ll 82 (1053)
T COG5101 12 DIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNN-SKLPQSKYIALSLLDKLITTKWK--------LL 82 (1053)
T ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHhhhh--------hC
Confidence 5667778888899999999999999999999999999999999976 44668899999999999999999 49
Q ss_pred ChhhHHHHHHHHHHHHhc--CChHHH-------HHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh-hH-HHHHHHHHHH
Q 003214 82 SQVDKDMVRDHILVFVAQ--VPPLLR-------VQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-QV-YGALFVLRIL 150 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~--~~~~i~-------~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-~~-~~~L~~L~~i 150 (838)
|++.|..||.-+++.+.+ ++.++| +.+-..+..|++.|||.+||+++|++++.-+.+ .+ ++.|.+|+.+
T Consensus 83 p~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklL 162 (1053)
T COG5101 83 PEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLL 162 (1053)
T ss_pred CcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHh
Confidence 999999999999999853 344443 567778899999999999999999999988776 33 4445555554
Q ss_pred HHHc-ccCCccC-----cchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhH-HhhhhcCCccc-------
Q 003214 151 SRKY-EFKSDEE-----RTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFW-SSIYLEIPKQL------- 216 (838)
Q Consensus 151 ~~~~-~~~~~~~-----~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~-~~~~~~~p~~~------- 216 (838)
.++. .+ +.++ ...+..-+..-||.++.++.+.+..+.. ..+....+..+. .+-+ +|-.+
T Consensus 163 sEEvFdf-SaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~----~SLi~ATLesllrfl~w--iPl~yIfeTnIi 235 (1053)
T COG5101 163 SEEVFDF-SAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD----ESLIEATLESLLRFLEW--IPLDYIFETNII 235 (1053)
T ss_pred HHHHHhc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHhh--CchhHHHHHHHH
Confidence 4432 12 1221 1234555566678888888777754431 122333333332 1111 12111
Q ss_pred -------CC-hhhHHHHHHHHHHHhcCC-CCCCCCCCChhhhhhccchhHH----HHHHH-HHHHHHHHhCCCCCCChhh
Q 003214 217 -------LD-PNVFNAWMILFLNVLERP-VPSEGEPADPEQRKSWGWWKVK----KWTVH-ILNRLYTRFGDLKLQNPEN 282 (838)
Q Consensus 217 -------~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~k~k----k~~~~-~l~~l~~~~~~~~~~~~~~ 282 (838)
.+ ++.-..-+..+..+..-- .| +.+++-+|.......+- ....+ .=.++.+.||... .+-
T Consensus 236 eLv~~~f~s~pd~r~~tl~CLtEi~~L~~~p---q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~---~ne 309 (1053)
T COG5101 236 ELVLEHFNSMPDTRVATLSCLTEIVDLGRHP---QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMD---KNE 309 (1053)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhccCc---ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccC---hhH
Confidence 00 000011122222222210 12 11121111000000000 00000 0013344554432 111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhh--------CC------cccCHHHHHHHHHHHHhhcCc-------------chh
Q 003214 283 RAFAQMFQKNYAGKILECHLNLLNRIR--------VG------GYLPDRVTNLILQYLSNSISK-------------NSM 335 (838)
Q Consensus 283 ~~f~~~f~~~~~~~~~~~~~~~l~~~~--------~~------~~~~~~~~~~~l~fl~~~~~~-------------~~~ 335 (838)
+.|.... ..++..+...+..++++.. .+ .-...++...++++|...+-. .+.
T Consensus 310 q~Fvq~L-A~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pl 388 (1053)
T COG5101 310 QIFVQKL-AQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPL 388 (1053)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcc
Confidence 2222111 1123334444444443311 00 011345778899999775421 010
Q ss_pred hh------------------hchhh-HHHHHH---HhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHH
Q 003214 336 YN------------------LLQPR-LDVLLF---EIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDF 393 (838)
Q Consensus 336 ~~------------------~~~~~-l~~li~---~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~l 393 (838)
-+ -++.| +..++. .+++-.| .++|+.-.-++|-.|-+|+...+. |....-.+-..+
T Consensus 389 i~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienM-vrPEEVliVendegEivRefvket-DtI~lYksmRev 466 (1053)
T COG5101 389 IQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENM-VRPEEVLIVENDEGEIVREFVKET-DTIELYKSMREV 466 (1053)
T ss_pred hhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcC-CCcceEEEEECCCcHHHHHHhccc-cHhHHHHHHhhH
Confidence 00 01111 233333 2344444 366777677888889888866433 233333344455
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccc----
Q 003214 394 VSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF---- 469 (838)
Q Consensus 394 l~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l---- 469 (838)
+..+..-.-.++-..+.+-+-..+- +...+|.......+|+|++++.+.+..+ ..|+.+.+.-+|
T Consensus 467 LvyLthL~v~Dte~~mi~Klarq~d------g~EWsw~nlNtLcWAIGSISGamsE~~E-----krF~VnviKdLL~Lce 535 (1053)
T COG5101 467 LVYLTHLIVDDTEKYMIGKLARQLD------GKEWSWNNLNTLCWAIGSISGAMSEVNE-----KRFFVNVIKDLLALCE 535 (1053)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHhc------CCccchhhHhHHHHHHhcccchhhhHHH-----HHHHHHHHHHHHHHHH
Confidence 6555443322222222221211111 1135799999999999999999876432 233333221111
Q ss_pred ----cCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc------ccccccc
Q 003214 470 ----SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRP 539 (838)
Q Consensus 470 ----~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~------~~~~l~p 539 (838)
.+.-..+.+..++++|||..+.-.+-..++.++..++..|+.....|+-.||.++-.+++.|. ....-.|
T Consensus 536 mKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEp 615 (1053)
T COG5101 536 MKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEP 615 (1053)
T ss_pred HhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCc
Confidence 234578889999999999876422336789999999999998888999999999999999986 3344578
Q ss_pred chHHHHHHHHHHhhhhchhh---HHHHHHHHHHh
Q 003214 540 ILPQLLDEFFKLMNEVENED---LVFTLETIVDK 570 (838)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~ 570 (838)
++..|+..|-....+.+... ...+++-++..
T Consensus 616 FI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse 649 (1053)
T COG5101 616 FIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISE 649 (1053)
T ss_pred HHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhc
Confidence 99999988877766655443 45555555543
No 15
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.7e-12 Score=139.18 Aligned_cols=502 Identities=14% Similarity=0.225 Sum_probs=282.1
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 4 ~~l~~~L~~~ls~--d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
+.+.|++.++..| |+..++||-+.+++++.+|..|..+.+++.+.+.++.+|..+...|-..++..+++ .
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne--------~ 74 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNE--------A 74 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhcc--------C
Confidence 4567888887775 89999999999999999999999999999987789999999999999998777664 6
Q ss_pred ChhhHHHHHHHHHHHHh-----c----CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh-h---HHHHHHHHH
Q 003214 82 SQVDKDMVRDHILVFVA-----Q----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGALFVLR 148 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~-----~----~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-~---~~~~L~~L~ 148 (838)
+..+.+.||..+...+. . .+.-|+++++.+++.+.-.+||..||.++.+++..++-+ + +.--+++|.
T Consensus 75 nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvll 154 (980)
T KOG2021|consen 75 NLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLL 154 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 77789999999998762 2 356799999999999999999999999999999999876 2 222344444
Q ss_pred HHHHHcc---c-CCcc-Ccc--hHHH-HHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhh-hcCCcccCCh
Q 003214 149 ILSRKYE---F-KSDE-ERT--PVYR-IVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPKQLLDP 219 (838)
Q Consensus 149 ~i~~~~~---~-~~~~-~~~--~~~~-~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~-~~~p~~~~~~ 219 (838)
.|=.+.. + ++++ .++ .++. +=++-.|.+.+.|-+.+....+. ....+...++.|+++.++ .++.- ..|.
T Consensus 155 aIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~-~npgl~~~cLdc~g~fVSWIdInL-IaNd 232 (980)
T KOG2021|consen 155 AIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI-VNPGLINSCLDCIGSFVSWIDINL-IAND 232 (980)
T ss_pred HhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHhhhhhhhh-hhch
Confidence 4433331 1 1111 111 1222 22345666666666555321111 123456667777765542 22211 0111
Q ss_pred -------------hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHH
Q 003214 220 -------------NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFA 286 (838)
Q Consensus 220 -------------~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~ 286 (838)
+.-..-++.++.+++... |+ ..|. ..+..++...+.||....-..+-.+|+
T Consensus 233 ~f~nLLy~fl~ieelR~aac~cilaiVsKkM-------kP-------~dKL--~lln~L~q~l~lfg~~s~dq~~d~df~ 296 (980)
T KOG2021|consen 233 YFLNLLYKFLNIEELRIAACNCILAIVSKKM-------KP-------MDKL--ALLNMLNQTLELFGYHSADQMDDLDFW 296 (980)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-------Ch-------hHHH--HHHHHHHHHHHHHhhhccccccCchHH
Confidence 111111222333333211 11 0011 112222222222221100000011222
Q ss_pred HHHHH--------------------------HhHHH---HHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhh
Q 003214 287 QMFQK--------------------------NYAGK---ILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYN 337 (838)
Q Consensus 287 ~~f~~--------------------------~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~ 337 (838)
+++.. +.... .+..+++.+.. +....+.+++-.+..++...=..+....
T Consensus 297 e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~--e~ddit~~ifpFlsdyl~~LKkl~~ls~ 374 (980)
T KOG2021|consen 297 ESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNN--EFDDITAKIFPFLSDYLAFLKKLKALSS 374 (980)
T ss_pred HHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 22211 00000 11111111111 0000111222222333332222222222
Q ss_pred hchhhHHHHHHHhHhccccCChhhHhhhhcC-HHHHHHHhcccccc-cCCHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 003214 338 LLQPRLDVLLFEIVFPLMCFNDNDQKLWDED-PHEYVRKGYDIIED-LYSPRTASMDFVSELVRKRGKENLQKFIQFIVG 415 (838)
Q Consensus 338 ~~~~~l~~li~~~i~~~l~~~~~d~e~w~~D-p~efi~~~~d~~~d-~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~ 415 (838)
.-+.++..++.. ++..+++.+ ...|.+| |.. | .|+ ....|.-=-.+++++...-+ +.++..+.+
T Consensus 375 ~qk~~l~~illa-i~kqicyde--my~nddn~tg~------E-eEa~f~e~RkkLk~fqdti~~idp----sl~l~~Ir~ 440 (980)
T KOG2021|consen 375 PQKVPLHKILLA-IFKQICYDE--MYFNDDNVTGD------E-EEAFFEEVRKKLKNFQDTIVVIDP----SLFLNNIRQ 440 (980)
T ss_pred hhhccHHHHHHH-HHHHHhccH--HhhcccCCCCc------h-HHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 234456665554 445666644 3456665 321 0 111 12456544455555544333 234455656
Q ss_pred HhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcC------Ccc-----hHHHHHHHhhcccccccCCCcchhhHHHHHH
Q 003214 416 IFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT------EPY-----KSELERMLVQHVFPEFSSPVGHLRAKAAWVA 484 (838)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~------~~~-----~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l 484 (838)
.+++..++.. ..+|...|.|++.+-.+++.++.. .+. ..+++.++... .....+|+.+.---+-.+
T Consensus 441 slS~al~ns~-e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ts--qv~~h~h~lVqLlfmE~i 517 (980)
T KOG2021|consen 441 SLSAALMNSK-EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTS--QVLAHDHELVQLLFMELI 517 (980)
T ss_pred HHHHHHhcCC-cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHc--ccccCCchHHHHHHHHHH
Confidence 6655444332 258999999999999999988631 111 11233333221 112357888888888888
Q ss_pred HhhhccccCChhHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003214 485 GQYAHINFSDQNNFRKALHSVVSG--LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (838)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (838)
-+|.++.-.++...+.++.+.+.. |.+.+..||..|..-+.+|+... +..+.||++.+++.+-.++
T Consensus 518 vRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL--kkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 518 VRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL--KKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 888764212234456666666543 55677889999999999999885 6888899999999999998
No 16
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.5e-12 Score=136.84 Aligned_cols=493 Identities=17% Similarity=0.231 Sum_probs=283.2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHh---
Q 003214 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA--- 98 (838)
Q Consensus 22 ~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~--- 98 (838)
..|.++|.++++++.-|..+-+++... .+.....+|+..+|++|++.... +|+.+....|+.++..+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~~--------Lp~~~~~slrdsl~thl~~l~ 72 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFSE--------LPPLTHASLRDSLITHLKELH 72 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHHh--------cCcchhHHHHHHHHHHHHHHH
Confidence 468899999999999999999999764 78999999999999999999985 888889999998887763
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHHHHHHcccCC----ccCcchHHHHHHHH
Q 003214 99 QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYEFKS----DEERTPVYRIVEET 172 (838)
Q Consensus 99 ~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i~~~~~~~~----~~~~~~~~~~~~~~ 172 (838)
+.++.+++|++.+++.+|-+ +| +|.+-++++++.+.+. .+..-|.+|.-+-++-+..+ ...|..+..-...-
T Consensus 73 ~~~~~i~tQL~vavA~Lal~-~~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 73 DHPDVIRTQLAVAVAALALH-MP-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQ 150 (559)
T ss_pred hCCchHHHHHHHHHHHHHHH-hH-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHh
Confidence 34449999999999999976 45 7999888888888776 33333333333333332211 12222332222222
Q ss_pred hHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhh-cCCc-ccCChhhHHHHHHHHHHHhcCCCCCCCCCCChh---
Q 003214 173 FHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPK-QLLDPNVFNAWMILFLNVLERPVPSEGEPADPE--- 247 (838)
Q Consensus 173 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~-~~p~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~--- 247 (838)
.+.++..+..+++..+ ..+...+..++|||.++... .+|. .+. ...+.+......++.. + .+.+..
T Consensus 151 ~~~~L~~l~~lLe~~~--l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~---a~~pLi~l~F~sl~~~-~---lhe~At~ci 221 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSD--LKSSDDLEQVLRCLGSWLRLHVFPPDQVL---ASFPLITLAFRSLSDD-E---LHEEATECI 221 (559)
T ss_pred HHHHHHHHHHHHhhcC--CChhhHHHHHHHHHhhhhhhccCCHHHHH---hhhHHHHHHHHHcccc-h---hhHHHHHHH
Confidence 3344444555554332 12355678889999887652 2332 111 1112222222222210 0 000000
Q ss_pred --------hhhhc-cc------------------------hhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhH
Q 003214 248 --------QRKSW-GW------------------------WKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYA 294 (838)
Q Consensus 248 --------~~~~~-~~------------------------~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~ 294 (838)
.++.. +. .+. ..+.++++.+.+.|.--....+
T Consensus 222 c~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~-~a~~RIFtel~eaf~~~i~~np-------------- 286 (559)
T KOG2081|consen 222 CALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKN-EAICRIFTELGEAFVVLISTNP-------------- 286 (559)
T ss_pred HHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHH-HHHHHHHHHHHHHHHHHHhhCC--------------
Confidence 00000 00 000 1122222222221100000000
Q ss_pred HHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcC------cchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcC
Q 003214 295 GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS------KNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDED 368 (838)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~------~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~D 368 (838)
.+++..+-.++...... ..+++...+.||...-+ ....+..++|++..++.-+. +..++.+ |.+..-++
T Consensus 287 ~~~l~~vellLl~~~h~---~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~-~h~qlp~-~~~~l~Ee 361 (559)
T KOG2081|consen 287 EEFLRIVELLLLVAGHN---DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLK-RHVQLPP-DQFDLPEE 361 (559)
T ss_pred CcchhHHHHHHHhccCC---chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHH-HHccCCC-ccccCccc
Confidence 01222221222222112 33788899999987643 22344567899999887644 6677655 32222111
Q ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhh
Q 003214 369 PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK 448 (838)
Q Consensus 369 p~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~ 448 (838)
- +++...|-..++++..++--.|++. .+..+...+.+ + +..|...||+++.+..++..+.
T Consensus 362 ~-----------~~f~~fR~~v~dvl~Dv~~iigs~e---~lk~~~~~l~e----~--~~~We~~EAaLF~l~~~~~~~~ 421 (559)
T KOG2081|consen 362 E-----------SEFFEFRLKVGDVLKDVAFIIGSDE---CLKQMYIRLKE----N--NASWEEVEAALFILRAVAKNVS 421 (559)
T ss_pred h-----------hHHHHHHHHHHHHHHHHHHHhCcHH---HHHHHHHHHcc----C--CCchHHHHHHHHHHHHHhccCC
Confidence 1 1234468888899999988877532 12222233332 1 2489999999999999998876
Q ss_pred cCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 003214 449 QTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 449 ~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
...+ ..++.++.- +. .+..+.| +|+.++.++|.|++|.=+.|+.+..+.+.+...+++.. ....|+.|+..++
T Consensus 422 ~~e~--~i~pevl~~-i~-nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~ 494 (559)
T KOG2081|consen 422 PEEN--TIMPEVLKL-IC-NLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRIC 494 (559)
T ss_pred cccc--chHHHHHHH-Hh-CCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHH
Confidence 4322 234444432 21 1222344 99999999999999865566778888888888887654 6778888999988
Q ss_pred HhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhc-ccchhhHHHHH
Q 003214 529 EACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLC 583 (838)
Q Consensus 529 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~-~~i~p~~~~l~ 583 (838)
..+. ....+.++.+...+..+.+..-+++ +...+..++.+.. .++.+...+++
T Consensus 495 ~~c~--~~~~~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 495 SACR--VQMTCLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred HHHH--HHhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 8874 5555555555554444444332222 4444455555543 23333333333
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4e-09 Score=120.31 Aligned_cols=736 Identities=15% Similarity=0.127 Sum_probs=375.1
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHhhc--CCChHHHHHHHHHh--cCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCCh
Q 003214 9 ILQGALS-PNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVD--NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQ 83 (838)
Q Consensus 9 ~L~~~ls-~d~~~r~~Ae~~L~~~~~--~p~f~~~Ll~i~~~--~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~ 83 (838)
+|...++ +-+.+|+.--+...++-+ -|+=|.-|++.+.+ ++.+++.|.+|...|...... ++.
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~------------~~~ 151 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET------------FGN 151 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh------------hcc
Confidence 3444444 567778777777777765 35555555555432 355789999998888766533 333
Q ss_pred hhHH---HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhC--CCCCh---hHHHHHHHHhhhh-------hHHHHHHHHH
Q 003214 84 VDKD---MVRDHILVFVAQVPPLLRVQLGECLKTIIHADY--PEQWP---HLLDWVKHNLQDQ-------QVYGALFVLR 148 (838)
Q Consensus 84 e~k~---~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~--p~~Wp---~ll~~l~~~l~s~-------~~~~~L~~L~ 148 (838)
..+. .++..+.++|.+++..||.....+++.++..-= +..|+ .++|.++..++.- ....+|.+|.
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 3333 567777788888777799999999988886431 33454 4666666665443 2356677777
Q ss_pred HHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCC-hhhHHHHHH
Q 003214 149 ILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLD-PNVFNAWMI 227 (838)
Q Consensus 149 ~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~-~~~~~~~~~ 227 (838)
++.+.. -+.+...+.+++...+.++.+ .. -...+|..++.++-++..+ -|..... .+...+.+.
T Consensus 232 El~e~~-------pk~l~~~l~~ii~~~l~Ia~n----~~---l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 232 ELLESE-------PKLLRPHLSQIIQFSLEIAKN----KE---LENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVP 296 (1075)
T ss_pred HHHhhc-------hHHHHHHHHHHHHHHHHHhhc----cc---ccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHH
Confidence 777542 112333334444444443332 11 1234677788887766544 2322211 122233333
Q ss_pred HHHHHhcCCC-CCCCCC---CChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHH----------------
Q 003214 228 LFLNVLERPV-PSEGEP---ADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQ---------------- 287 (838)
Q Consensus 228 ~~~~~l~~~~-~~~~~~---~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~---------------- 287 (838)
.++....... ..+-.+ .|+|+ .+. -...+.+.+.++....| ++.+-+-..+...
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~-~~~----~~~~A~~~lDrlA~~L~-g~~v~p~~~~~l~~~l~S~~w~~R~AaL~ 370 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDD-EET----PYRAAEQALDRLALHLG-GKQVLPPLFEALEAMLQSTEWKERHAALL 370 (1075)
T ss_pred HHHHhcCCcccchhhcccccccccc-ccC----cHHHHHHHHHHHHhcCC-hhhehHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3333222100 000001 11111 111 12334455555554433 2222111101000
Q ss_pred ----------HHHHHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccC
Q 003214 288 ----------MFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCF 357 (838)
Q Consensus 288 ----------~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~ 357 (838)
......+|.++..+++.+.. ...+++..|+.-+.++... +.|.+..-....+.|.+..
T Consensus 371 Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D------phprVr~AA~naigQ~std------l~p~iqk~~~e~l~~aL~~ 438 (1075)
T KOG2171|consen 371 ALSVIAEGCSDVMIGNLPKILPIVLNGLND------PHPRVRYAALNAIGQMSTD------LQPEIQKKHHERLPPALIA 438 (1075)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHhhhhh------hcHHHHHHHHHhccHHHHH
Confidence 00111222333333322211 1345666666666554321 3333333233333222211
Q ss_pred ChhhHhhhhcCHHHHHHHhcccccccCCHH--HHHHHHHHHHHhhcccchHHHHHHHHHH-HhccccCCCCCCcchhhHh
Q 003214 358 NDNDQKLWDEDPHEYVRKGYDIIEDLYSPR--TASMDFVSELVRKRGKENLQKFIQFIVG-IFKRYDETPVEYKPYRQKD 434 (838)
Q Consensus 358 ~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r--~~a~~ll~~l~~~~~~~~~~~il~~~~~-~l~~~~~~~~~~~~~~~~e 434 (838)
. .| +..++| ..|...+..+.+.-.+..+.+.+..+.+ .+....++ .....+|
T Consensus 439 ~------------------ld---~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~----~~~~v~e 493 (1075)
T KOG2171|consen 439 L------------------LD---STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS----SKPYVQE 493 (1075)
T ss_pred H------------------hc---ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC----CchhHHH
Confidence 0 11 112233 3345555556565555556555554444 44332222 3679999
Q ss_pred HHHHHHHHHHHHhhcC-CcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhc---
Q 003214 435 GALLAIGALCDKLKQT-EPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSG--- 508 (838)
Q Consensus 435 a~l~~lg~i~~~l~~~-~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~--- 508 (838)
.+.-+||++|+...+. .+|-+-+.+.|.+.+...=.....-+|+..+-++|-.+....+.. +...++++.+...
T Consensus 494 ~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~ 573 (1075)
T KOG2171|consen 494 QAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGS 573 (1075)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhccc
Confidence 9999999999987653 234344445454433211112356789998888887754332222 4567777777776
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh------ch-------------------h-----
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV------EN-------------------E----- 558 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~------~~-------------------~----- 558 (838)
..+.+-+.+.+...+..++|... .++|.||++.+|.-++.-.+.. ++ .
T Consensus 574 ~~~~dd~~~sy~~~~warmc~il--g~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I 651 (1075)
T KOG2171|consen 574 DQDDDDPLRSYMIAFWARMCRIL--GDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGI 651 (1075)
T ss_pred chhhccccHHHHHHHHHHHHHHh--chhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeee
Confidence 34456778999999999999986 5999999999999988766421 00 0
Q ss_pred ---------hHHHHHHHHHHhhcccchhhHHHHHHHHHHH----------------HHHHHhc----ccCCCCCCChhHH
Q 003214 559 ---------DLVFTLETIVDKFGEEMAPYALGLCQNLAAA----------------FWRCMNT----AEADEDADDPGAL 609 (838)
Q Consensus 559 ---------~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~----------------~~~~~~~----~~~d~~~~~~~~~ 609 (838)
.....|..+....++.+.||+.+.+...+.. ++.+... ....|. .-+.+
T Consensus 652 ~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~--~l~~l 729 (1075)
T KOG2171|consen 652 RTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE--YLKQL 729 (1075)
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH--HHHHH
Confidence 0123344445556788999998888722211 0000000 000110 00000
Q ss_pred HH-------------------HHHHHHHHHHHHhhcCC---hHHHHHHH----hhHHHHHHHHhcc--C-----------
Q 003214 610 AA-------------------VGCLRAISTILESVSRL---PHLFVQIE----PTLLPIMRRMLTT--D----------- 650 (838)
Q Consensus 610 ~~-------------------~~~l~~i~~i~~~~~~~---~~~~~~l~----~~~~p~i~~~l~~--~----------- 650 (838)
.. ..++++++..++.+|.. ++....+. ..+...+...-.. +
T Consensus 730 ~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~ee 809 (1075)
T KOG2171|consen 730 WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEE 809 (1075)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 00 11122222222222210 00001110 1111111111000 0
Q ss_pred ------hhhHHHHHHHHHHHhhhc-CCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHH
Q 003214 651 ------GQEVFEEVLEIVSYMTFF-SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQ 723 (838)
Q Consensus 651 ------~~~~~~~~l~ll~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~ 723 (838)
..++.+.+.+++..+++. .+.+-|.+.+++|.+.+.+.+...--.+-.+.++...+..+++.-. +|-.
T Consensus 810 e~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~-----~~~~ 884 (1075)
T KOG2171|consen 810 EDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASA-----KYKE 884 (1075)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccc-----hHHH
Confidence 012444555555555543 2456677777777777766432211234444555555555444333 5666
Q ss_pred HHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHhhcc
Q 003214 724 SLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-----AEKSYLKCLLVQVIADALYY 798 (838)
Q Consensus 724 ~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~-----~~~~~~~~~~l~v~~~~~~~ 798 (838)
.++-.+-..+.+...+. +..|..-++.+.+..+..+.+.+...+..+...++. +++....-..+.-|++.+.+
T Consensus 885 ~~~p~~~~~~~d~~pEV--RqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~ 962 (1075)
T KOG2171|consen 885 RFLPLVLEALQDSDPEV--RQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLF 962 (1075)
T ss_pred HHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHh
Confidence 66666666666443222 345666677777777766777777777777776654 23445556678889999888
Q ss_pred ChHHHHHHHHhcCchHHHHHHHHHhhhhhhhcCcc
Q 003214 799 NSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLR 833 (838)
Q Consensus 799 ~~~~~~~~L~~~~~~~~~~~~w~~~~~~~~~~~~r 833 (838)
+|...- ..+++..|+...|...+..|-
T Consensus 963 ~~~~i~--------vdqvl~~~l~~LPl~~D~eEa 989 (1075)
T KOG2171|consen 963 NPNRIP--------VDQVLPAWLSWLPLKEDKEEA 989 (1075)
T ss_pred CCccCc--------HHHHHHHHHHhCCCccchhhh
Confidence 876432 457777888777777665543
No 18
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=9.5e-11 Score=135.95 Aligned_cols=173 Identities=17% Similarity=0.322 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 4 ~~l~~~L~~~ls~--d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
.++..++..+++| +++.|.+|.+.+.+++..|+-+.....|+... ....+|.+|.-+|-+.|+.+|+. +
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-~~~~~k~f~Lqlle~vik~~W~~--------~ 80 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-TNPILKYFALQLLENVIKFRWNS--------L 80 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-CCchhheeeHHHHHHHHHHhccc--------C
Confidence 4667777777775 78899999999999999999999888888764 47789999999999999999995 9
Q ss_pred ChhhHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHHH
Q 003214 82 SQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRIL 150 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~---------~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i 150 (838)
|.++|..+|..++..+.. +.+.++.+++.++..|++.|||+.||++++++.+....+ .-..++.++..+
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 999999999999998742 245688999999999999999999999999999998877 234455555555
Q ss_pred HHHcc-cCCcc----CcchHHHHHHHHhHHHHHHHHHHhc
Q 003214 151 SRKYE-FKSDE----ERTPVYRIVEETFHHLLNIFNRLVQ 185 (838)
Q Consensus 151 ~~~~~-~~~~~----~~~~~~~~~~~~~p~l~~~~~~~~~ 185 (838)
.+++- +.+.. ....++..+...|..+.+++.....
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~ 200 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKE 200 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 55542 22211 1223455555567777777766443
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.5e-10 Score=123.58 Aligned_cols=439 Identities=13% Similarity=0.200 Sum_probs=261.3
Q ss_pred CHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhh------HhhhhcCHHHHHHHhccccc--ccCCH
Q 003214 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND------QKLWDEDPHEYVRKGYDIIE--DLYSP 386 (838)
Q Consensus 315 ~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d------~e~w~~Dp~efi~~~~d~~~--d~~s~ 386 (838)
+.++...++.-+..+++ -.|+.+.+++.+-+..+-+..|. +++| +|-|..=.+|-+.-..+.++ |.+.+
T Consensus 230 d~~i~~aa~~ClvkIm~--LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMS--LYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45788888888877753 46778888877644433335554 4443 56687544443332112111 22323
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc
Q 003214 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (838)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~ 466 (838)
+++. +|-+..++.+++.+.+.+.+...++. .++|...-||--+++..+..+.+. +..++-+|+.+++
T Consensus 307 -p~~~--------~fa~~a~~~v~P~Ll~~L~kqde~~d-~DdWnp~kAAg~CL~l~A~~~~D~--Iv~~Vl~Fiee~i- 373 (859)
T KOG1241|consen 307 -PSSK--------YFARQALQDVVPVLLELLTKQDEDDD-DDDWNPAKAAGVCLMLFAQCVGDD--IVPHVLPFIEENI- 373 (859)
T ss_pred -chhh--------HHHHHHHhHhhHHHHHHHHhCCCCcc-cccCcHHHHHHHHHHHHHHHhccc--chhhhHHHHHHhc-
Confidence 1221 12222333344444556655444433 357999999999999999877663 3345556666544
Q ss_pred ccccCCCcchhhHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc--ccc
Q 003214 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI--RPI 540 (838)
Q Consensus 467 p~l~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l--~p~ 540 (838)
++|+..=|-.|....|..-+.. ++ ....+.++.+++.+.|+...||.+|+.+|.++++... +.+ .-+
T Consensus 374 ---~~pdwr~reaavmAFGSIl~gp--~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~ 446 (859)
T KOG1241|consen 374 ---QNPDWRNREAAVMAFGSILEGP--EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQEL 446 (859)
T ss_pred ---CCcchhhhhHHHHHHHhhhcCC--chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhh
Confidence 6777777888888887765432 33 3457778888888999999999999999999999874 333 236
Q ss_pred hHHHHHHHHHHhhhhch--hhHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 003214 541 LPQLLDEFFKLMNEVEN--EDLVFTLETIVDKFG---------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (838)
Q Consensus 541 l~~il~~L~~ll~~~~~--~~l~~~l~~iv~~~~---------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (838)
+.+.++.+..-+++... .....++..+++.+. +..+|+...|+..|+. .-+..+.++ .-
T Consensus 447 l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~----~tdr~dgnq------sN 516 (859)
T KOG1241|consen 447 LQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK----VTDRADGNQ------SN 516 (859)
T ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh----hccccccch------hh
Confidence 66677766666654221 123445555554331 2356788888888876 333322222 34
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHH----Hhc-----cCh----hhHHHHHHHHHHHhhhcC-CCCCHh
Q 003214 610 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRR----MLT-----TDG----QEVFEEVLEIVSYMTFFS-PTISLE 675 (838)
Q Consensus 610 ~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~----~l~-----~~~----~~~~~~~l~ll~~~~~~~-~~~~~~ 675 (838)
++...++++.+++....+ .++. ....+++++.. +++ .+. .++-.-.+..+..+++.. +.+.+.
T Consensus 517 LR~AAYeALmElIk~st~--~vy~-~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~ 593 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTD--DVYP-MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV 593 (859)
T ss_pred HHHHHHHHHHHHHHcCcH--HHHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH
Confidence 678899999999997532 2332 23333333333 333 222 133344444445555543 233344
Q ss_pred hhHhHHHHHHHHhhhH-hhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCC-ccCchhHHHHHH
Q 003214 676 MWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG-DIEPAPKLIEVV 753 (838)
Q Consensus 676 l~~l~~~l~~~~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~~~~~~ll~~i 753 (838)
-.+++..+++++++.. ...-.+.+-.+...+..-+..|. .|+..+...+.+-|. +..++ .+..+..++..+
T Consensus 594 ~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~-----kym~~f~pyL~~gL~--n~~e~qVc~~aVglVgdl 666 (859)
T KOG1241|consen 594 SDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA-----KYMPAFKPYLLMGLS--NFQEYQVCAAAVGLVGDL 666 (859)
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHH
Confidence 4455555556654411 12223444444444444455566 688877777777663 22333 346678999999
Q ss_pred HHHcccCcccchHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhh
Q 003214 754 FQNCKGQVDHWVEPYLRITVERLRRA-EKSYLKCLLVQVIADAL 796 (838)
Q Consensus 754 ~~~~~~~~~~~l~~il~~~l~~l~~~-~~~~~~~~~l~v~~~~~ 796 (838)
...++..+.||...+++.+++.|+++ .+..++-.++.+|....
T Consensus 667 ~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 667 ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence 99999999999999999999999874 34445555555555443
No 20
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.40 E-value=8.2e-13 Score=107.64 Aligned_cols=75 Identities=36% Similarity=0.602 Sum_probs=66.0
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHh
Q 003214 24 AEHSLNQFQYT-PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA 98 (838)
Q Consensus 24 Ae~~L~~~~~~-p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~ 98 (838)
||++|++++++ |||+.+|++|+.+++.+..+|++|+++|||.|+++|+......+..+|+++|..||+.|+++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 9999999999988888999999999999999999999321112234999999999999999874
No 21
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.4e-08 Score=105.50 Aligned_cols=677 Identities=13% Similarity=0.155 Sum_probs=363.2
Q ss_pred cCCCHHHHHHHHHHHHHh-hc-CCChHH--------HHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCCh
Q 003214 14 LSPNPEERKAAEHSLNQF-QY-TPQHLV--------RLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQ 83 (838)
Q Consensus 14 ls~d~~~r~~Ae~~L~~~-~~-~p~f~~--------~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~ 83 (838)
-+-|-..|..|.--|+.- .. .+.+.+ .+++-+.+ .+.-||-..+|..-..+.+ |.-. ..|
T Consensus 58 ~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd--~~~lIr~tvGivITTI~s~-~~~~------~wp- 127 (885)
T KOG2023|consen 58 KSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGD--ASPLIRATVGIVITTIAST-GGLQ------HWP- 127 (885)
T ss_pred cccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccC--chHHHHhhhhheeeeeecc-cccc------cch-
Confidence 344556788888777732 21 222222 22233322 3557888888776544433 3211 122
Q ss_pred hhHHHHHHHHHHHHhcCChHH-------HHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhh--hH-HHHHHHHHHHHH
Q 003214 84 VDKDMVRDHILVFVAQVPPLL-------RVQLGECLKTIIHADYPEQ-WPHLLDWVKHNLQDQ--QV-YGALFVLRILSR 152 (838)
Q Consensus 84 e~k~~ir~~ll~~l~~~~~~i-------~~~~~~~i~~Ia~~d~p~~-Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~ 152 (838)
.+-..|.++|..++... -.++|+=.+.+...|++++ -.-++|..++.++++ .+ -.++.|+++++-
T Consensus 128 ----elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 128 ----ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred ----hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 35566778776554222 2445555555666666633 234889999999887 33 446788888773
Q ss_pred HcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHH
Q 003214 153 KYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNV 232 (838)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 232 (838)
.- .+.+..-+..+...+ |. +.+ ++..++++.+|+.|..+.... |+.+. +++...++.+++.
T Consensus 204 ~~-------~qal~~~iD~Fle~l---Fa-lan-----D~~~eVRk~vC~alv~Llevr-~dkl~--phl~~IveyML~~ 264 (885)
T KOG2023|consen 204 IQ-------TQALYVHIDKFLEIL---FA-LAN-----DEDPEVRKNVCRALVFLLEVR-PDKLV--PHLDNIVEYMLQR 264 (885)
T ss_pred cC-------cHHHHHHHHHHHHHH---HH-Hcc-----CCCHHHHHHHHHHHHHHHHhc-HHhcc--cchHHHHHHHHHH
Confidence 21 112222222222222 22 111 345789999999998776532 33333 5667777776654
Q ss_pred hcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHH-------
Q 003214 233 LERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLL------- 305 (838)
Q Consensus 233 l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l------- 305 (838)
.+. .|+ .+--.+++....+.+. | .++....+|++.++..+++-+
T Consensus 265 tqd--------~dE---------~VALEACEFwla~aeq---p---------i~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 265 TQD--------VDE---------NVALEACEFWLALAEQ---P---------ICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred ccC--------cch---------hHHHHHHHHHHHHhcC---c---------CcHHHHHHHHHHHHHHHHccCccccccH
Confidence 432 122 1223345544444332 1 112233334444444433221
Q ss_pred ---HhhhCCcccC-------------------------------------------HHHHHHHHHHHHhhcCcchhhhhc
Q 003214 306 ---NRIRVGGYLP-------------------------------------------DRVTNLILQYLSNSISKNSMYNLL 339 (838)
Q Consensus 306 ---~~~~~~~~~~-------------------------------------------~~~~~~~l~fl~~~~~~~~~~~~~ 339 (838)
.+..+...++ .++...+++.+..+.
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf--------- 386 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF--------- 386 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---------
Confidence 1000000000 122222333332221
Q ss_pred hhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcc---cchHHHHHHHHHHH
Q 003214 340 QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG---KENLQKFIQFIVGI 416 (838)
Q Consensus 340 ~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~---~~~~~~il~~~~~~ 416 (838)
.+=+-.+++|.+. +.. +.+.|-.|.|+.-.+.++++.-- -..++.++.++.+.
T Consensus 387 ----~~elL~~l~PlLk------------------~~L--~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~ 442 (885)
T KOG2023|consen 387 ----GDELLPILLPLLK------------------EHL--SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL 442 (885)
T ss_pred ----HHHHHHHHHHHHH------------------HHc--CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH
Confidence 1111223345432 111 11235567777777777766321 23456677777777
Q ss_pred hccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh-
Q 003214 417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ- 495 (838)
Q Consensus 417 l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~- 495 (838)
+.. +....|--.++.++..+..+..... ...+.+++.. ++.-+-+++..++-+||-..+-+-+-- .++
T Consensus 443 L~D--------KkplVRsITCWTLsRys~wv~~~~~-~~~f~pvL~~-ll~~llD~NK~VQEAAcsAfAtleE~A-~~eL 511 (885)
T KOG2023|consen 443 LDD--------KKPLVRSITCWTLSRYSKWVVQDSR-DEYFKPVLEG-LLRRLLDSNKKVQEAACSAFATLEEEA-GEEL 511 (885)
T ss_pred hcc--------CccceeeeeeeeHhhhhhhHhcCCh-HhhhHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHhc-cchh
Confidence 753 3445555556666766665543221 1123333322 112223688999999998887775421 011
Q ss_pred -hHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHHHHhc-ccccccccchHHHHHHHHHHhhhhchh--hHHHHHHHHH
Q 003214 496 -NNFRKALHSVVSGLR---DPELPVRVDSVFALRSFVEAC-RDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIV 568 (838)
Q Consensus 496 -~~~~~~~~~l~~~l~---~~~~~V~~~A~~al~~~~~~~-~~~~~l~p~l~~il~~L~~ll~~~~~~--~l~~~l~~iv 568 (838)
.++..+++.++.+++ ..+..+-+-|..+|..-+.+. +.+.++.-.+|+++++.-.+.++ +.+ .+++++.++.
T Consensus 512 Vp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~-DKdLfPLLEClSsia 590 (885)
T KOG2023|consen 512 VPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS-DKDLFPLLECLSSIA 590 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc-cchHHHHHHHHHHHH
Confidence 356777777776664 467777777877777766432 24677877888888887655443 223 3889999999
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHh---cccCCCC-CCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHH
Q 003214 569 DKFGEEMAPYALGLCQNLAAAFWRCMN---TAEADED-ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMR 644 (838)
Q Consensus 569 ~~~~~~i~p~~~~l~~~L~~~~~~~~~---~~~~d~~-~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~ 644 (838)
...+..+.||+..+.+..+..+.+..+ ....++. +..++.. ..-.++.++-+++.++.+.+-.- ....+..++.
T Consensus 591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdf-iI~sLDL~SGLaegLg~~ie~Lv-a~snl~~lll 668 (885)
T KOG2023|consen 591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDF-IIVSLDLLSGLAEGLGSHIEPLV-AQSNLLDLLL 668 (885)
T ss_pred HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcce-EEEeHHHHhHHHHHhhhchHHHh-hhccHHHHHH
Confidence 999999999999988877765543322 1111221 1112222 23457888889998876654332 1255888899
Q ss_pred HHhccChhhHHHHHHHHHHHhhhcC-CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHH
Q 003214 645 RMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQ 723 (838)
Q Consensus 645 ~~l~~~~~~~~~~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~ 723 (838)
.|++....+..+.++.++.-+++.+ ..+-|.+-..+|.+..-+.........+..-.+.....+... ....++.
T Consensus 669 ~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~-----~~~~~v~ 743 (885)
T KOG2023|consen 669 QCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL-----KMKQYVS 743 (885)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch-----hhhhHHH
Confidence 9998888999999999999999876 456677777776554333221111111222122111111111 1124556
Q ss_pred HHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHHH
Q 003214 724 SLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLT 803 (838)
Q Consensus 724 ~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~ 803 (838)
.++.-+.-.++.+.....-....+-.++.+-..+|..++|+++.++.--+.++.+-++..-+-+-.--+|.++-.||..+
T Consensus 744 ~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 744 PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV 823 (885)
T ss_pred HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh
Confidence 65554444444333221111223334555566677778999999999988888653222223333334455555565544
Q ss_pred H
Q 003214 804 L 804 (838)
Q Consensus 804 ~ 804 (838)
+
T Consensus 824 v 824 (885)
T KOG2023|consen 824 V 824 (885)
T ss_pred h
Confidence 3
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.14 E-value=2e-07 Score=98.09 Aligned_cols=442 Identities=12% Similarity=0.146 Sum_probs=250.1
Q ss_pred CHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhh-----HhhhhcCHHHHHHHhcccccccCCHHHH
Q 003214 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND-----QKLWDEDPHEYVRKGYDIIEDLYSPRTA 389 (838)
Q Consensus 315 ~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d-----~e~w~~Dp~efi~~~~d~~~d~~s~r~~ 389 (838)
++++...++--+..++ .-.|+.+++.+++.+..+....|.-+.++ +|-|..=.+|-+.-++++ .+-+..-
T Consensus 234 d~e~q~aafgCl~kim--~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~---~~~pe~p 308 (858)
T COG5215 234 DEELQHAAFGCLNKIM--MLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMED---KYLPEVP 308 (858)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHH---hhcccCc
Confidence 3456666666555554 23567777777777776666666544443 456755444433322221 1111000
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccc
Q 003214 390 SMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF 469 (838)
Q Consensus 390 a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l 469 (838)
|.+- .++..--+++++.++. .+.+...++. .++|...-||-.++...+..+.+. +..++-.|+.+ .+
T Consensus 309 ~qn~--~fa~aav~dvlP~lL~----LL~~q~ed~~-~DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~FvEq----ni 375 (858)
T COG5215 309 AQNH--GFARAAVADVLPELLS----LLEKQGEDYY-GDDWNPSMAASSCLQLFAQLKGDK--IMRPVLGFVEQ----NI 375 (858)
T ss_pred hhhc--chHHHHHHHHHHHHHH----HHHhcCCCcc-ccccchhhhHHHHHHHHHHHhhhH--hHHHHHHHHHH----hc
Confidence 0000 0000000234454444 4444333333 368999999999999888776553 22233344444 34
Q ss_pred cCCCcchhhHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc--chHH
Q 003214 470 SSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP--ILPQ 543 (838)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p--~l~~ 543 (838)
++++..=|-.|....|..-+-. +. ....+.++.+.+.+.|+..-|+.++++|+..+.+.. .+.+.| +++.
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp--~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~~ 451 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGP--CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLVL 451 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCc--cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccccH
Confidence 6676666777777777654321 22 245777888888889999999999999999998875 345544 5555
Q ss_pred HHHHHHHHhhhhchhh--HHHHHHHHHHhh-------cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHH
Q 003214 544 LLDEFFKLMNEVENED--LVFTLETIVDKF-------GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (838)
Q Consensus 544 il~~L~~ll~~~~~~~--l~~~l~~iv~~~-------~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (838)
.++.++.-+.+..... -......+++++ ..-+.|+...++..|++. -+.. .|| .-.+.+.
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~----t~~~-~Ne------~n~R~s~ 520 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKG----TELA-LNE------SNLRVSL 520 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHH----HHhh-ccc------hhHHHHH
Confidence 5555544333221111 223344444433 334678888888888762 2222 232 2356789
Q ss_pred HHHHHHHHHhhcCC-hHHHHHHHhhHHHHHHHHhcc-------Ch----hhHHHHHHHHHHHhhhcCC-CCCHhhhHhHH
Q 003214 615 LRAISTILESVSRL-PHLFVQIEPTLLPIMRRMLTT-------DG----QEVFEEVLEIVSYMTFFSP-TISLEMWSLWP 681 (838)
Q Consensus 615 l~~i~~i~~~~~~~-~~~~~~l~~~~~p~i~~~l~~-------~~----~~~~~~~l~ll~~~~~~~~-~~~~~l~~l~~ 681 (838)
++++++++....+. .+....+...+..-+..+++- ++ .++....+-++..+++..+ .+.+--.+++.
T Consensus 521 fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~ 600 (858)
T COG5215 521 FSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLME 600 (858)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 99999999887542 233344445555555544432 22 4677788888888887653 34333334444
Q ss_pred HHHHHHhhh-HhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC
Q 003214 682 LMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (838)
Q Consensus 682 ~l~~~~~~~-~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~ 760 (838)
.+++++++. ......++.-.+.+...-=.+.|- .|...+.-...+.++ ..+..-...+..++..+...++..
T Consensus 601 Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe-----~y~~~fiPyl~~aln--~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 601 LFIRILESTKPTTAFGDVYTAISALSTSLEERFE-----QYASKFIPYLTRALN--CTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHhc--chhHHHHHHHHHHHHHHHHHhhhh
Confidence 445554432 222334444444433222122333 456666555566663 122222456788899999999988
Q ss_pred cccchHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhh
Q 003214 761 VDHWVEPYLRITVERLRRA-EKSYLKCLLVQVIADAL 796 (838)
Q Consensus 761 ~~~~l~~il~~~l~~l~~~-~~~~~~~~~l~v~~~~~ 796 (838)
+.+|...+++.+++.|.++ .+..++-.++.+|....
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 9999999999999999874 44445555555555443
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.12 E-value=4.7e-05 Score=85.31 Aligned_cols=612 Identities=13% Similarity=0.156 Sum_probs=313.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-Hhhc---------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCC
Q 003214 8 LILQGALSPNPEERKAAEHSLN-QFQY---------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNE 77 (838)
Q Consensus 8 ~~L~~~ls~d~~~r~~Ae~~L~-~~~~---------~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~ 77 (838)
++++...|+|.+.|=-|..-|. ++++ .+.-...+++.+.+ .+.+|+.+|.=.+--.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D--~ngEVQnlAVKClg~lv----s------ 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED--KNGEVQNLAVKCLGPLV----S------ 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc--cCcHHHHHHHHHHHHHH----h------
Confidence 7788888999998888877765 5554 34567788888865 35567777765554444 1
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC----CCChhHHHHHHHHhhhh--------h-HHHHH
Q 003214 78 QQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP----EQWPHLLDWVKHNLQDQ--------Q-VYGAL 144 (838)
Q Consensus 78 ~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p----~~Wp~ll~~l~~~l~s~--------~-~~~~L 144 (838)
.++++.-..+-++|...+.+...+.|-.-+..+......--| .--|+.++.+...+.+. . ..-+|
T Consensus 77 --Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~l 154 (1233)
T KOG1824|consen 77 --KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVL 154 (1233)
T ss_pred --hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 267777778888888887666555554444433333332223 12345555555444433 1 13345
Q ss_pred HHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHH
Q 003214 145 FVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNA 224 (838)
Q Consensus 145 ~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~ 224 (838)
..+..+..+|.. +++.+-+.++......++. ....+++.++-++.++..+. + .+.+..
T Consensus 155 Dil~d~lsr~g~-----------ll~~fh~~il~~l~~ql~s-----~R~aVrKkai~~l~~la~~~-~-----~~ly~~ 212 (1233)
T KOG1824|consen 155 DILADVLSRFGT-----------LLPNFHLSILKCLLPQLQS-----PRLAVRKKAITALGHLASSC-N-----RDLYVE 212 (1233)
T ss_pred HHHHHHHHhhcc-----------cCcchHHHHHHHHhhcccC-----hHHHHHHHHHHHHHHHHHhc-C-----HHHHHH
Confidence 555555554432 2222222222221111111 24567888888887765432 2 234455
Q ss_pred HHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHH
Q 003214 225 WMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNL 304 (838)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 304 (838)
.++.++.-|..+ .... .. +-.++++..+...-|..+ . .+++.++..+.+.
T Consensus 213 li~~Ll~~L~~~-------~q~~--------~~-rt~Iq~l~~i~r~ag~r~---------~-----~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 213 LIEHLLKGLSNR-------TQMS--------AT-RTYIQCLAAICRQAGHRF---------G-----SHLDKIVPLVADY 262 (1233)
T ss_pred HHHHHHhccCCC-------CchH--------HH-HHHHHHHHHHHHHhcchh---------h-----cccchhhHHHHHH
Confidence 555554444432 1110 12 224456665555433211 1 1333333333333
Q ss_pred HHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCC------h--hhHhhhhcCHHHHH--H
Q 003214 305 LNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFN------D--NDQKLWDEDPHEYV--R 374 (838)
Q Consensus 305 l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~------~--~d~e~w~~Dp~efi--~ 374 (838)
.+.. ...+|+++.++++-+...+..-+ +.+.|+.++++.. ++.|+.+. . ++.+.+.+|-+++- .
T Consensus 263 ~~~~---e~~dDELrE~~lQale~fl~rcp--~ei~p~~pei~~l-~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d 336 (1233)
T KOG1824|consen 263 CNKI---EEDDDELREYCLQALESFLRRCP--KEILPHVPEIINL-CLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD 336 (1233)
T ss_pred hccc---ccCcHHHHHHHHHHHHHHHHhCh--hhhcccchHHHHH-HHHHhccCCCCCCCCccchhhhhhhccccchhcc
Confidence 3221 12367777777776655543211 2455666665443 33444332 2 22233333322221 1
Q ss_pred HhcccccccCCHHHHHHHHHHHHHhhcccchHHHH-----------------------HHHHHHHhccccC------CC-
Q 003214 375 KGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKF-----------------------IQFIVGIFKRYDE------TP- 424 (838)
Q Consensus 375 ~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~i-----------------------l~~~~~~l~~~~~------~~- 424 (838)
++.|+.+-.|-+|++|..++..+...+.+ .++.+ +......+.+... ++
T Consensus 337 eYsDDeD~SWkVRRaAaKcl~a~IsSR~E-~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d 415 (1233)
T KOG1824|consen 337 EYSDDEDMSWKVRRAAAKCLEAVISSRLE-MLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADND 415 (1233)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhccHH-HHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCch
Confidence 11222112488999999999988765532 22221 1111122211100 00
Q ss_pred ----C--CCcchhhHhHHHHHHHHHHHHhhcCC--cchHHHHHHHhh--ccccccc----------------C--CCcch
Q 003214 425 ----V--EYKPYRQKDGALLAIGALCDKLKQTE--PYKSELERMLVQ--HVFPEFS----------------S--PVGHL 476 (838)
Q Consensus 425 ----~--~~~~~~~~ea~l~~lg~i~~~l~~~~--~~~~~~~~~l~~--~v~p~l~----------------~--~~~~l 476 (838)
+ ..+-|..++....++.++...++++. ....-+ ..|.. .++|..- + ....+
T Consensus 416 ~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf-~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ 494 (1233)
T KOG1824|consen 416 AMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCF-LLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNL 494 (1233)
T ss_pred hhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHH-HHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHH
Confidence 0 01248889999999999999987532 111111 11111 1233221 1 12234
Q ss_pred hhHHHHHHHh-hhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cc---cccccchHHHHHH
Q 003214 477 RAKAAWVAGQ-YAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DL---NEIRPILPQLLDE 547 (838)
Q Consensus 477 r~ra~~~l~~-~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~--~~---~~l~p~l~~il~~ 547 (838)
+-.++-++.- ..... |+ .+.....+.++.+..|+-..|...|......++.... .+ -...||+.+++..
T Consensus 495 ki~~L~fl~~~L~s~~p~~fh--p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~ 572 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEVFH--PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDC 572 (1233)
T ss_pred HHHHHHHHHHHHhcCChhhcc--cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHH
Confidence 4444444422 22211 21 2456666777777888877788788777777777653 22 4578899999988
Q ss_pred HHHHhhhhchhh-----HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 003214 548 FFKLMNEVENED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (838)
Q Consensus 548 L~~ll~~~~~~~-----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~ 622 (838)
-++.+...+.+. ...+++.++..|++......+.+...++. -+++ .+.+...+.+++.|+
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~e----Rl~n-----------EiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLE----RLGN-----------EITRLTAVKALTLIA 637 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHhc-----------hhHHHHHHHHHHHHH
Confidence 888877655442 67888888999987766666666555554 2221 234566778888887
Q ss_pred HhhcCC--hHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhc-CCCCCHhhh-HhHHHHHHHHhhhHhhhhhhh
Q 003214 623 ESVSRL--PHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF-SPTISLEMW-SLWPLMMEALADWAIDFFPNI 698 (838)
Q Consensus 623 ~~~~~~--~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~-~~~~~~~l~-~l~~~l~~~~~~~~~~~l~~~ 698 (838)
.+.-.- .++. ..++|.+..-+.+..--+--..+..+..++.+ .+.+++.+. .++..+..++...+.-.-+..
T Consensus 638 ~S~l~i~l~~~l----~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a 713 (1233)
T KOG1824|consen 638 MSPLDIDLSPVL----TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLA 713 (1233)
T ss_pred hccceeehhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 765321 1222 34444444444443333333444444444443 355555544 344555555443333344445
Q ss_pred hhhhhhhhccCccccc
Q 003214 699 LVPLDNYISRGTAHFL 714 (838)
Q Consensus 699 ~~~L~~~i~~~~~~~l 714 (838)
+.+|.......|..++
T Consensus 714 ~~~L~tl~~~~ps~l~ 729 (1233)
T KOG1824|consen 714 VAFLTTLAIIQPSSLL 729 (1233)
T ss_pred HHHHHHHHhcccHHHH
Confidence 5555555444444444
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.80 E-value=0.00072 Score=76.25 Aligned_cols=593 Identities=14% Similarity=0.177 Sum_probs=314.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhc-CCC-hHHHHHHHHHhc--CcChhhHHHHHHHHHHhhhhcCCCCCCC--------
Q 003214 9 ILQGALSPNPEERKAAEHSLNQFQY-TPQ-HLVRLLQIIVDN--NCDLSVRQVASIHFKNFIAKNWAPHEPN-------- 76 (838)
Q Consensus 9 ~L~~~ls~d~~~r~~Ae~~L~~~~~-~p~-f~~~Ll~i~~~~--~~~~~iR~~Aai~lKn~i~~~W~~~~~~-------- 76 (838)
+|+..-+.+.+++.-|=+.|.-+.+ -|+ =..++.+-++++ +.-.+.|-.++|-||-.|..-=...+.+
T Consensus 52 lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~ 131 (1233)
T KOG1824|consen 52 LLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKR 131 (1233)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHH
Confidence 3444444678888888888875543 343 234444444332 1245788888888888876543211100
Q ss_pred --------------------------------CCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCC
Q 003214 77 --------------------------------EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQW 124 (838)
Q Consensus 77 --------------------------------~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~W 124 (838)
....+++ ....|-..++.-+..+-..||+..+.+++.++..---+-+
T Consensus 132 ~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly 210 (1233)
T KOG1824|consen 132 ITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY 210 (1233)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 0111222 1111212222222233467999999999999976433457
Q ss_pred hhHHHHHHHHhhhh----hHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHH
Q 003214 125 PHLLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLI 200 (838)
Q Consensus 125 p~ll~~l~~~l~s~----~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 200 (838)
.++++.+..-+.++ .++....||..+++.-.++ +..-.+.+.|.+.++++..-. ...+++..+
T Consensus 211 ~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r-------~~~h~~~ivp~v~~y~~~~e~------~dDELrE~~ 277 (1233)
T KOG1824|consen 211 VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR-------FGSHLDKIVPLVADYCNKIEE------DDDELREYC 277 (1233)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch-------hhcccchhhHHHHHHhccccc------CcHHHHHHH
Confidence 77888888777665 4677788999999754322 223334566777777754311 124566666
Q ss_pred HHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCC--CCh----------hh------hhhccchhHHHHHH
Q 003214 201 CKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEP--ADP----------EQ------RKSWGWWKVKKWTV 262 (838)
Q Consensus 201 lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~d~----------~~------~~~~~~~k~kk~~~ 262 (838)
+..+..+... -|.... +......++++..++.+ |..+.. .|+ ++ .+..-=||+++.+.
T Consensus 278 lQale~fl~r-cp~ei~--p~~pei~~l~l~yisYD-PNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAa 353 (1233)
T KOG1824|consen 278 LQALESFLRR-CPKEIL--PHVPEIINLCLSYISYD-PNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAA 353 (1233)
T ss_pred HHHHHHHHHh-Chhhhc--ccchHHHHHHHHHhccC-CCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHH
Confidence 6666554432 232221 34455677777788764 211111 111 00 01112489999999
Q ss_pred HHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHH---------------HHHHHHHHHHHhhhCC-ccc--CHHHHHHHHH
Q 003214 263 HILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG---------------KILECHLNLLNRIRVG-GYL--PDRVTNLILQ 324 (838)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~---------------~~~~~~~~~l~~~~~~-~~~--~~~~~~~~l~ 324 (838)
+++..++..- .++ ...|.....| .++..+..++.+.+.- ++. .|..-.
T Consensus 354 Kcl~a~IsSR-------~E~---L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~---- 419 (1233)
T KOG1824|consen 354 KCLEAVISSR-------LEM---LPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ---- 419 (1233)
T ss_pred HHHHHHHhcc-------HHH---HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc----
Confidence 9988776531 111 0011111111 1222233332221100 000 000000
Q ss_pred HHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccc
Q 003214 325 YLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE 404 (838)
Q Consensus 325 fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~ 404 (838)
...+.-...++.....++.. |-+. ++ ++.--.|..+..+|.++...+++.
T Consensus 420 -----~g~~s~~~~L~~~~~~iVka-i~~q------------------lr------~ks~kt~~~cf~lL~eli~~lp~~ 469 (1233)
T KOG1824|consen 420 -----GGTPSDLSMLSDQVPLIVKA-IQKQ------------------LR------EKSVKTRQGCFLLLTELINVLPGA 469 (1233)
T ss_pred -----cCCccchHHHHhhhHHHHHH-HHHH------------------Hh------hccccchhhHHHHHHHHHHhCcch
Confidence 00000011222222222221 1111 11 111225777888888888877653
Q ss_pred hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHH
Q 003214 405 NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVA 484 (838)
Q Consensus 405 ~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l 484 (838)
..+.+...+..+..+.. ..+..+...+++.-+..+.+...-.+. |. +..+.+...+.-...++.+-+.+-|+.+.
T Consensus 470 l~~~~~slvpgI~~~l~--DkSsss~~ki~~L~fl~~~L~s~~p~~--fh-p~~~~Ls~~v~~aV~d~fyKisaEAL~v~ 544 (1233)
T KOG1824|consen 470 LAQHIPSLVPGIIYSLN--DKSSSSNLKIDALVFLYSALISHPPEV--FH-PHLSALSPPVVAAVGDPFYKISAEALLVC 544 (1233)
T ss_pred hhhcccccchhhhhhcC--CccchHHHHHHHHHHHHHHHhcCChhh--cc-cchhhhhhHHHHHhcCchHhhhHHHHHHH
Confidence 33322222222222211 111235688888888888776643321 11 11222222233334567788899999999
Q ss_pred Hhhhccc--------cCChhHHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003214 485 GQYAHIN--------FSDQNNFRKALHSVVSGLR--DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (838)
Q Consensus 485 ~~~~~~~--------~~~~~~~~~~~~~l~~~l~--~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (838)
++|.++. |.......+++...++.|. |.|.-||..|..++..++... .+.+...++.++..++.-+++
T Consensus 545 ~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~f--gD~l~~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 545 QQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANF--GDFLGNELPRTLPILLERLGN 622 (1233)
T ss_pred HHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHHHHHHhc
Confidence 9997643 2222567889999998884 678889999999999999886 477888888888888877764
Q ss_pred h-chhhHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC--hH
Q 003214 555 V-ENEDLVFTLETIVDK-FGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL--PH 630 (838)
Q Consensus 555 ~-~~~~l~~~l~~iv~~-~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~--~~ 630 (838)
- .--....++.-|+.. ..=...|...++...+.+ |++... .-++..++.++..++...+.. ++
T Consensus 623 EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~-flrK~~------------r~lr~~~l~a~~~L~~~~~~~~~~~ 689 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELAS-FLRKNQ------------RALRLATLTALDKLVKNYSDSIPAE 689 (1233)
T ss_pred hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHH-HHHHHH------------HHHHHHHHHHHHHHHHHHhccccHH
Confidence 2 111234455555432 222356777888888876 333211 124567888899998887543 22
Q ss_pred HHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCC-CCHhhhHhHHHHHHHH
Q 003214 631 LFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT-ISLEMWSLWPLMMEAL 687 (838)
Q Consensus 631 ~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~-~~~~l~~l~~~l~~~~ 687 (838)
.+..+-..+.|+|.. ..-+..+.++.++++++...+. .....-.+++.++.++
T Consensus 690 ~~e~vL~el~~Lise----sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll 743 (1233)
T KOG1824|consen 690 LLEAVLVELPPLISE----SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLL 743 (1233)
T ss_pred HHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHh
Confidence 333333333444333 3346778889999888754322 1111224455555544
No 25
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.77 E-value=5.1e-08 Score=91.06 Aligned_cols=129 Identities=24% Similarity=0.428 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHHHHHHcc-cCC----ccCcchHHHHHHHHh
Q 003214 101 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYE-FKS----DEERTPVYRIVEETF 173 (838)
Q Consensus 101 ~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i~~~~~-~~~----~~~~~~~~~~~~~~~ 173 (838)
++.|++++|.+++.|+.+|||++||++++++++.++++ ....+|.+|..+.+++. +.+ .+.|..+...+...+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999986 56778888888888775 221 223556777777778
Q ss_pred HHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhc
Q 003214 174 HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE 234 (838)
Q Consensus 174 p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 234 (838)
|.+++++...++..... ...++...+++|+.+++..--++.+.+ ..+++.+.++++
T Consensus 81 ~~i~~~l~~~l~~~~~~-~~~~~~~~~L~~l~s~i~~~~~~~i~~----~~~l~~~~~~l~ 136 (148)
T PF08389_consen 81 PDILEILSQILSQSSSE-ANEELVKAALKCLKSWISWIPIELIIN----SNLLNLIFQLLQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHCHC-CHHHHHHHHHHHHHHHTTTS-HHHHHS----SSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHHHhCCHHHhcc----HHHHHHHHHHcC
Confidence 88888888777543211 126778889999998875221222221 125566666664
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0068 Score=69.42 Aligned_cols=636 Identities=13% Similarity=0.130 Sum_probs=294.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhc--CcChhhHHHHHHHHHHhhhh-cCCCCCCCCCCCCC--
Q 003214 10 LQGALSPNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVDN--NCDLSVRQVASIHFKNFIAK-NWAPHEPNEQQKIS-- 82 (838)
Q Consensus 10 L~~~ls~d~~~r~~Ae~~L~~~~~--~p~f~~~Ll~i~~~~--~~~~~iR~~Aai~lKn~i~~-~W~~~~~~~~~~l~-- 82 (838)
+......+.-.|.+-.+-|+..-+ .|+.|.-++..+.+- +.+...=.-|.+.|....++ .|+..+++.+ +.
T Consensus 95 l~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~--l~~~ 172 (1010)
T KOG1991|consen 95 LETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQP--LGEA 172 (1010)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcccccccc--HHHH
Confidence 344444566788888888877654 677777776655431 22444456677788888776 4776543221 22
Q ss_pred -hhhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHhhCCC---------CChhHHHHHHHHhhhh-----------
Q 003214 83 -QVDKDMVRDHILVFVAQVP---PLLRVQLGECLKTIIHADYPE---------QWPHLLDWVKHNLQDQ----------- 138 (838)
Q Consensus 83 -~e~k~~ir~~ll~~l~~~~---~~i~~~~~~~i~~Ia~~d~p~---------~Wp~ll~~l~~~l~s~----------- 138 (838)
++.=..|.+...+.+.+++ ..+.++++.+.-....++.|. .|-+++-.+++.=-..
T Consensus 173 v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 173 VEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 1122223333333333333 345567777777777788883 3666665555542221
Q ss_pred ------hHHHHHHHHHHHHHHcccCCc--cCcchHHHH-HHHHhHHHHHHHHHHhcccCCc-hhHHHHHHHHHHHhHHhh
Q 003214 139 ------QVYGALFVLRILSRKYEFKSD--EERTPVYRI-VEETFHHLLNIFNRLVQIVNPS-LEVADLIKLICKIFWSSI 208 (838)
Q Consensus 139 ------~~~~~L~~L~~i~~~~~~~~~--~~~~~~~~~-~~~~~p~l~~~~~~~~~~~~~~-~~~~~~~~~~lki~~~~~ 208 (838)
.-.=|+..|++++.+|...+. ...+++.++ ...++|.+++.+-..+...... =.+..++..++.-+..++
T Consensus 253 ~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~V 332 (1010)
T KOG1991|consen 253 SWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCV 332 (1010)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhc
Confidence 113478999999999864321 123344332 2334444444332222211100 013455666665555554
Q ss_pred hhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHH
Q 003214 209 YLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQM 288 (838)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~ 288 (838)
.... .. ..+.+.++.+.+-+=.|+-.. ...|++.-++.|..-+++ -+ .+++.+.+|. .....|...
T Consensus 333 s~~~---tw--kll~PHl~~ii~~vIFPlmc~-~d~deelwe~DP~EYiR~-~~----Di~ed~~sp~---~Aa~~~l~~ 398 (1010)
T KOG1991|consen 333 SHAS---TW--KLLKPHLQVIIQDVIFPLMCF-NDEDEELWEEDPYEYIRK-KF----DIFEDGYSPD---TAALDFLTT 398 (1010)
T ss_pred cHHH---HH--HHhhhHHHHHHHHhhhhhcCC-CcccHHHHhcCHHHHHHh-cC----chhcccCCCc---HHHHHHHHH
Confidence 3210 11 122333333322221221111 122332223333322222 11 1223332221 111111111
Q ss_pred HH----HHhHHHHHHHHHHHHHhhhCCc--ccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhH
Q 003214 289 FQ----KNYAGKILECHLNLLNRIRVGG--YLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQ 362 (838)
Q Consensus 289 f~----~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~ 362 (838)
.. ...+|.+++.+.+++....+.. ..+.+-..-|+..+.++++.=.-...++..++.++...++|.++
T Consensus 399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~------ 472 (1010)
T KOG1991|consen 399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ------ 472 (1010)
T ss_pred HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc------
Confidence 11 1245778888888887543221 12233344455555544321000012344555555555666432
Q ss_pred hhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHh-hcc-cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHH
Q 003214 363 KLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVR-KRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAI 440 (838)
Q Consensus 363 e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~-~~~-~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~l 440 (838)
+|-- -.|.-|..++..++. .++ ...+..+++.+...+..- ++=+...|||+ |+
T Consensus 473 -----s~~g-------------~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d------~~lPV~VeAal-AL 527 (1010)
T KOG1991|consen 473 -----SPYG-------------YLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLND------NELPVRVEAAL-AL 527 (1010)
T ss_pred -----Cchh-------------HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccC------CcCchhhHHHH-HH
Confidence 1211 256667788888873 454 345556666666665521 13467888888 56
Q ss_pred HHHHHHhhcCCc-chHHHHHHHhhcccccccC-CCcchhhHHHHHHHhhhccc--cCChhHHHHHHHHHHhcCCC---CC
Q 003214 441 GALCDKLKQTEP-YKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSVVSGLRD---PE 513 (838)
Q Consensus 441 g~i~~~l~~~~~-~~~~~~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~---~~ 513 (838)
.++-....+..+ +..++.+++.+ ++...+. .+--|..--=-++++|++-. | ..+....+.....+++++ .+
T Consensus 528 q~fI~~~~~~~e~~~~hvp~~mq~-lL~L~ne~End~Lt~vme~iV~~fseElsPf-A~eL~q~La~~F~k~l~~~~~~~ 605 (1010)
T KOG1991|consen 528 QSFISNQEQADEKVSAHVPPIMQE-LLKLSNEVENDDLTNVMEKIVCKFSEELSPF-AVELCQNLAETFLKVLQTSEDED 605 (1010)
T ss_pred HHHHhcchhhhhhHhhhhhHHHHH-HHHHHHhcchhHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHhccCCCC
Confidence 555554433211 23344444332 2211121 22233333344556666532 2 124455555555555542 22
Q ss_pred Cc---hHHHHHHHH---HHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHH---hhcccchhhHHHHHH
Q 003214 514 LP---VRVDSVFAL---RSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVD---KFGEEMAPYALGLCQ 584 (838)
Q Consensus 514 ~~---V~~~A~~al---~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~---~~~~~i~p~~~~l~~ 584 (838)
.. -.++|...| .+++...+....+..++.+++-.....+-..+-.+...-+-+++. .+..+|.|-+-.+.+
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~ 685 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLE 685 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHH
Confidence 22 233444333 344433332333333333332222222222222233333333333 235678888877777
Q ss_pred HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh----cCChHHHHHHHhhHHHHHHHHhccChh--hHHHHH
Q 003214 585 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV----SRLPHLFVQIEPTLLPIMRRMLTTDGQ--EVFEEV 658 (838)
Q Consensus 585 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~----~~~~~~~~~l~~~~~p~i~~~l~~~~~--~~~~~~ 658 (838)
.+...|.+ | . .-+-..+.-.+.+.+..- .+++. ..+.++.+++.++..+.. +=++.+
T Consensus 686 li~e~~~~-~---~---------~dyf~d~~~~l~N~vt~g~~~~~s~~~----y~~il~~i~~~~l~~e~~~D~d~~~a 748 (1010)
T KOG1991|consen 686 LILEVFQD-D---G---------IDYFTDMMPALHNYVTYGTPSLLSNPD----YLQILLEIIKKVLTSENGEDSDCESA 748 (1010)
T ss_pred HHHHHHhh-h---h---------HHHHHHHHHHHhhheeeCchhhhccch----HHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 66654333 1 0 001112223333333221 12221 236788888999887543 335668
Q ss_pred HHHHHHhhhcCCCCCHhhhHhHHHHHHH----Hhh--hHhhhhhhhhhhhhhhhccCccccc
Q 003214 659 LEIVSYMTFFSPTISLEMWSLWPLMMEA----LAD--WAIDFFPNILVPLDNYISRGTAHFL 714 (838)
Q Consensus 659 l~ll~~~~~~~~~~~~~l~~l~~~l~~~----~~~--~~~~~l~~~~~~L~~~i~~~~~~~l 714 (838)
+.|+..++-+++.. +.+..|..+++ +.. ....+..-++.+.-|-+.+.|...+
T Consensus 749 ~kLle~iiL~~kg~---~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL 807 (1010)
T KOG1991|consen 749 CKLLEVIILNCKGL---LDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTL 807 (1010)
T ss_pred HHHHHHHHHHhcCc---HhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999888877652 22233333333 211 1233444556666666666666444
No 27
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.31 E-value=0.0017 Score=71.39 Aligned_cols=251 Identities=16% Similarity=0.201 Sum_probs=154.1
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHhhhhchhh--HHHHHHHHHHhhcccch
Q 003214 500 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR-PILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEMA 576 (838)
Q Consensus 500 ~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~-p~l~~il~~L~~ll~~~~~~~--l~~~l~~iv~~~~~~i~ 576 (838)
.++..++.-+.|...+-|-.++.++.+++.... ...|. ..-+.+++.++..+++.+.+. .+..+..++..++..+.
T Consensus 716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg-~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~k 794 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLG-AADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVK 794 (1172)
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHhccc-cccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccc
Confidence 344455555666667778888888888887764 33332 344567888888887765544 56788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHH
Q 003214 577 PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656 (838)
Q Consensus 577 p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~ 656 (838)
||.++|++.... .+++.. +..+....+.++.+...++...+ ..+...+=-++.+.+..+..+.+.
T Consensus 795 pylpqi~stiL~----rLnnks---------a~vRqqaadlis~la~Vlktc~e--e~~m~~lGvvLyEylgeeypEvLg 859 (1172)
T KOG0213|consen 795 PYLPQICSTILW----RLNNKS---------AKVRQQAADLISSLAKVLKTCGE--EKLMGHLGVVLYEYLGEEYPEVLG 859 (1172)
T ss_pred cchHHHHHHHHH----HhcCCC---------hhHHHHHHHHHHHHHHHHHhccH--HHHHHHhhHHHHHhcCcccHHHHH
Confidence 999999987653 222211 23455566666666555532211 112234444455555556666777
Q ss_pred HHHHHHHHhhhcC--CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhc
Q 003214 657 EVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMA 734 (838)
Q Consensus 657 ~~l~ll~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~ 734 (838)
.++.-+.+++... ....|....++|.+..++.+--...-.+++.++.....+|++.+-.. +++...|+++.-+-.
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLka 936 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKA 936 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHH
Confidence 7776666666532 34556667778887777754444466678888888888888865432 566666666655543
Q ss_pred CCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh
Q 003214 735 DKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (838)
Q Consensus 735 ~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~ 778 (838)
... +- ...+..-++.|....|. ++++..++..|..
T Consensus 937 hkK-~i--RRaa~nTfG~IakaIGP------qdVLatLlnnLkv 971 (1172)
T KOG0213|consen 937 HKK-EI--RRAAVNTFGYIAKAIGP------QDVLATLLNNLKV 971 (1172)
T ss_pred HHH-HH--HHHHHhhhhHHHHhcCH------HHHHHHHHhcchH
Confidence 221 11 12344555555555543 2567777777755
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00059 Score=80.82 Aligned_cols=199 Identities=15% Similarity=0.275 Sum_probs=135.3
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccc-c---CCCcchhhHHHHHHHhhhccccCCh-----hHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF-S---SPVGHLRAKAAWVAGQYAHINFSDQ-----NNF 498 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l-~---~~~~~lr~ra~~~l~~~~~~~~~~~-----~~~ 498 (838)
..|..|-||-+.+|.++..-. ..+++++.+ ++|-| + +|++-++..- - +-|.... .+. +++
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~------~kl~p~l~k-LIPrLyRY~yDP~~~Vq~aM-~--sIW~~Li-~D~k~~vd~y~ 1037 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAG------EKLEPYLKK-LIPRLYRYQYDPDKKVQDAM-T--SIWNALI-TDSKKVVDEYL 1037 (1702)
T ss_pred chhhcccchhhchHHHHHHHH------HhhhhHHHH-hhHHHhhhccCCcHHHHHHH-H--HHHHHhc-cChHHHHHHHH
Confidence 479999999999999998643 346777766 44543 3 4565555442 2 2233222 121 578
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh------hHHHHHHHHHHhhc
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDKFG 572 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~------~l~~~l~~iv~~~~ 572 (838)
..+++-++..|.+..=+||.++|.||..+++... .+.+...+|.+...++..+.+.... -...++..++-+.+
T Consensus 1038 neIl~eLL~~lt~kewRVReasclAL~dLl~g~~-~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1038 NEILDELLVNLTSKEWRVREASCLALADLLQGRP-FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999875 7788889999999999999876442 25677888877776
Q ss_pred ccchh-hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhcc
Q 003214 573 EEMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 649 (838)
Q Consensus 573 ~~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~ 649 (838)
+-..+ -+.+.+..+.++ +|+.+.... - .-.+--++.++..++.+-+. ...+..+.++|.+...+..
T Consensus 1117 d~~~~~~~~~~l~~iLPf---Ll~~gims~----v-~evr~~si~tl~dl~Kssg~---~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPF---LLDEGIMSK----V-NEVRRFSIGTLMDLAKSSGK---ELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred ccCCcccHHHHHHHHHHH---HhccCcccc----h-HHHHHHHHHHHHHHHHhchh---hhcchhhHHHHHHHHHccc
Confidence 65444 255666666654 555544311 1 22344567777777776543 3334446777777766543
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00031 Score=74.76 Aligned_cols=384 Identities=15% Similarity=0.176 Sum_probs=212.5
Q ss_pred cCCHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003214 383 LYSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~-~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l 461 (838)
.|..|.+|+--++.+++.+ .+.-...+-.++.+....+..++.. ..+-|++.++.+.+-++.... ..-++.++
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~----n~rkGgLiGlAA~~iaLg~~~--~~Y~~~iv 86 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA----NMRKGGLIGLAAVAIALGIKD--AGYLEKIV 86 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc----ccccchHHHHHHHHHHhcccc--HHHHHHhh
Confidence 4678999888888887755 2223344444555555555554432 222399988888877775432 12344444
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc
Q 003214 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (838)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (838)
.. |++.+.+++..+|.-||-.+=..+++- +. ...+..++..+.+...|++.-|| .++.-+.+++.+....+.=.=
T Consensus 87 ~P-v~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 87 PP-VLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred HH-HHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccccccc
Confidence 33 566778888999999988775555431 11 14578889999999899988888 566778887776541111112
Q ss_pred chHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003214 540 ILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (838)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (838)
.++.++.-|-.-+...+..+ +.+-+..+-..=.=++..|.+++...|.+ ..+ |+ ..-.+.-+=.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~----~Ls----D~-----s~eVr~~~~t 230 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN----MLS----DS-----SDEVRTLTDT 230 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH----Hhc----CC-----cHHHHHHHHH
Confidence 34444444444343333222 33333333222223455677777777765 222 21 1112334556
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC-CCCCHhhhHhHHHHHHHHhhhHhhhh
Q 003214 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFF 695 (838)
Q Consensus 617 ~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~l 695 (838)
++..++..+.+.|..+. .+...+++..-++.........++.-+..+++-. +.+-+.+..++..++.++.+......
T Consensus 231 ~l~~fL~eI~s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHHhcCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 77888888877776532 1344444444343334444556655555666543 23344455566666666533211111
Q ss_pred hhhhhhhhh-hhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHH
Q 003214 696 PNILVPLDN-YISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE 774 (838)
Q Consensus 696 ~~~~~~L~~-~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~ 774 (838)
..+-..++. ......+.... .+-.+ ..+++++.+.+.+...+ .+.++.+-+..+..+.|+++-.+..+|+..++.
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~-~~id~-~~ii~vl~~~l~~~~~~--tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~ 384 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLK-EEIDY-GSIIEVLTKYLSDDREE--TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhc-cccch-HHHHHHHHHHhhcchHH--HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHH
Confidence 111111110 11111111111 00023 35678888888754322 357888999999999999988888899888888
Q ss_pred HHhhhhhhHHHHHHHHHHHHh
Q 003214 775 RLRRAEKSYLKCLLVQVIADA 795 (838)
Q Consensus 775 ~l~~~~~~~~~~~~l~v~~~~ 795 (838)
.|.+..+. +...-+.+++..
T Consensus 385 tLsd~sd~-vvl~~L~lla~i 404 (675)
T KOG0212|consen 385 TLSDRSDE-VVLLALSLLASI 404 (675)
T ss_pred hhcCchhH-HHHHHHHHHHHH
Confidence 87664322 333334444443
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.12 E-value=0.029 Score=64.60 Aligned_cols=503 Identities=15% Similarity=0.187 Sum_probs=269.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC-ChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCC
Q 003214 4 PSLALILQGALSPNPEERKAAEHSLNQFQY---TP-QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (838)
Q Consensus 4 ~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~---~p-~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~ 79 (838)
+++.++++..- .|...++.|=+.|-.+.. .. .+.....+.+. +.+...|.++-+++.... .
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~----~-------- 71 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYL----H-------- 71 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHT----T--------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHh----h--------
Confidence 56677776655 577778778777776643 11 22334444443 458899999988886664 2
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hH-HHHHHHHHHHHHHccc
Q 003214 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEF 156 (838)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~ 156 (838)
-+++.--.+-+.+.+-+.++++.+|...-.+++.|.. |+-.+.+++.+.+.+.++ .+ ..|..++..+++...
T Consensus 72 -~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p- 146 (526)
T PF01602_consen 72 -EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP- 146 (526)
T ss_dssp -TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-
T ss_pred -cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-
Confidence 3344455566666677788899999777777777774 445788999999999887 33 667888989887641
Q ss_pred CCccCcchHHHHHHH-HhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcC
Q 003214 157 KSDEERTPVYRIVEE-TFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 235 (838)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 235 (838)
+ .++. ++|.+.++ +.+.+ ..++..++.++..+ . .-|.... ..+......+.+.+..
T Consensus 147 ---~-------~~~~~~~~~l~~l----L~d~~-----~~V~~~a~~~l~~i-~-~~~~~~~--~~~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 147 ---D-------LVEDELIPKLKQL----LSDKD-----PSVVSAALSLLSEI-K-CNDDSYK--SLIPKLIRILCQLLSD 203 (526)
T ss_dssp ---C-------CHHGGHHHHHHHH----TTHSS-----HHHHHHHHHHHHHH-H-CTHHHHT--THHHHHHHHHHHHHTC
T ss_pred ---H-------HHHHHHHHHHhhh----ccCCc-----chhHHHHHHHHHHH-c-cCcchhh--hhHHHHHHHhhhcccc
Confidence 1 1111 23443333 32222 34556667777655 1 0111111 2344444444444422
Q ss_pred CCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccC
Q 003214 236 PVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 315 (838)
Q Consensus 236 ~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (838)
+ + | |....+-+++.+|... .+... .+ ..+++.+...+.. .+
T Consensus 204 ~--------~-------~------~~q~~il~~l~~~~~~---~~~~~-------~~--~~~i~~l~~~l~s------~~ 244 (526)
T PF01602_consen 204 P--------D-------P------WLQIKILRLLRRYAPM---EPEDA-------DK--NRIIEPLLNLLQS------SS 244 (526)
T ss_dssp C--------S-------H------HHHHHHHHHHTTSTSS---SHHHH-------HH--HHHHHHHHHHHHH------HH
T ss_pred c--------c-------h------HHHHHHHHHHHhcccC---Chhhh-------hH--HHHHHHHHHHhhc------cc
Confidence 1 1 1 2222233344444321 11110 00 1244444444432 24
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003214 316 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (838)
Q Consensus 316 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~ 395 (838)
..++..+...+..+..... .+..++..++ ..+. . ...+.|-.|.+.+.
T Consensus 245 ~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~-~lL~--s----------------------~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSPE-------LLQKAINPLI-KLLS--S----------------------SDPNVRYIALDSLS 292 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHH-------HHHHHHHHHH-HHHT--S----------------------SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcchH-------HHHhhHHHHH-HHhh--c----------------------ccchhehhHHHHHH
Confidence 5567777777765543332 1111111111 1110 0 01236777777888
Q ss_pred HHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-CCCc
Q 003214 396 ELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVG 474 (838)
Q Consensus 396 ~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~-~~~~ 474 (838)
.++...+..+.. .......+.. .++...|--++.++..++..- ++..++. .+...+. .+++
T Consensus 293 ~l~~~~~~~v~~--~~~~~~~l~~-------~~d~~Ir~~~l~lL~~l~~~~--------n~~~Il~-eL~~~l~~~~d~ 354 (526)
T PF01602_consen 293 QLAQSNPPAVFN--QSLILFFLLY-------DDDPSIRKKALDLLYKLANES--------NVKEILD-ELLKYLSELSDP 354 (526)
T ss_dssp HHCCHCHHHHGT--HHHHHHHHHC-------SSSHHHHHHHHHHHHHH--HH--------HHHHHHH-HHHHHHHHC--H
T ss_pred Hhhcccchhhhh--hhhhhheecC-------CCChhHHHHHHHHHhhccccc--------chhhHHH-HHHHHHHhccch
Confidence 877766322211 1111122221 124456666677776666531 2222222 1222332 2345
Q ss_pred chhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003214 475 HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (838)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (838)
-+|..++..++..+.-. +.....+++.+++.+......+...+...+..++.... +. -..++..++..+.+
T Consensus 355 ~~~~~~i~~I~~la~~~---~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~~----~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKF---PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--EL----REKILKKLIELLED 425 (526)
T ss_dssp HHHHHHHHHHHHHHHHH---GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--TT----HHHHHHHHHHHHTS
T ss_pred hhhhhHHHHHHHHHhcc---CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--hh----hHHHHHHHHHHHHH
Confidence 58899999998887632 22356677777777776666678888889999887742 11 23457777777777
Q ss_pred hchhhHHHHHHHHHHhhcccchh--hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHH
Q 003214 555 VENEDLVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF 632 (838)
Q Consensus 555 ~~~~~l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~ 632 (838)
.+...+..++--++..|++.+.. .+.++...+... +. ++ ....+..++.++..+....... +.
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~----~~----~~-----~~~vk~~ilt~~~Kl~~~~~~~-~~- 490 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTESAPDILRSLIEN----FI----EE-----SPEVKLQILTALAKLFKRNPEN-EV- 490 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHH----HT----TS-----HHHHHHHHHHHHHHHHHHSCST-TH-
T ss_pred hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHh----hc----cc-----cHHHHHHHHHHHHHHHhhCCch-hh-
Confidence 65555544444445455544433 455666555542 21 11 2345677888888887764321 11
Q ss_pred HHHHhhHHHHHHHHhc--cChhhHHHHHHHHHHHh
Q 003214 633 VQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYM 665 (838)
Q Consensus 633 ~~l~~~~~p~i~~~l~--~~~~~~~~~~l~ll~~~ 665 (838)
.+.+.+.+..... ..+.+..+.+...+.-+
T Consensus 491 ---~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 491 ---QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ---HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 1355556666555 44567777777766654
No 31
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.0046 Score=67.57 Aligned_cols=335 Identities=13% Similarity=0.124 Sum_probs=189.7
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
+.+.+...++..+.-.........++.-+.+.+.. .....+.++-+.+..+..+..-.. ... ..++.+
T Consensus 111 ~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~--------~~~~~~~~aa~~~ag~v~g~~i~~-~~~--~~~l~~- 178 (569)
T KOG1242|consen 111 SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTS--------TKIAERAGAAYGLAGLVNGLGIES-LKE--FGFLDN- 178 (569)
T ss_pred HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhcc--------ccHHHHhhhhHHHHHHHcCcHHhh-hhh--hhHHHH-
Confidence 35556666666665554443444455555566653 133444444444443333321100 000 112211
Q ss_pred ccccccCCCcchhhH-HHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 003214 465 VFPEFSSPVGHLRAK-AAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (838)
Q Consensus 465 v~p~l~~~~~~lr~r-a~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (838)
+.-...+.....++. +....-.+....-. .+..+..+++.++.+..|....||.+|..|.+.+.+... ...++-.++
T Consensus 179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~-~~aVK~llp 257 (569)
T KOG1242|consen 179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS-AYAVKLLLP 257 (569)
T ss_pred HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC-cchhhHhhh
Confidence 211224444555554 22222222221111 124679999999999999999999999999999888764 555666777
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 003214 543 QLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (838)
Q Consensus 543 ~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~ 622 (838)
.++..+..- +--+-...+..++.+.......+.-++++++..+... +|++. ...+..-.+||..+.
T Consensus 258 sll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev---l~DT~----------~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 258 SLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV---LWDTK----------PEVRKAGIETLLKFG 323 (569)
T ss_pred hhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH---HccCC----------HHHHHHHHHHHHHHH
Confidence 777776665 2223344677788777777777777788888888774 34332 233445566666665
Q ss_pred HhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhh
Q 003214 623 ESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPL 702 (838)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L 702 (838)
..+. ++++ +.++|.+-.++.+... ..+++++.+.......---.|.+--+.|.+.+-+.+.+.+.-.....++
T Consensus 324 svid-N~dI-----~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 324 SVID-NPDI-----QKIIPTLLDALADPSC-YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred Hhhc-cHHH-----HHHHHHHHHHhcCccc-chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 5543 4553 5688888888865443 3444444443332222122356666667666666555555556666666
Q ss_pred hhhhccC--cccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC
Q 003214 703 DNYISRG--TAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (838)
Q Consensus 703 ~~~i~~~--~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~ 760 (838)
+|....- +..+. +|+..++.-+.+.+.++ .. +.+..+.+-+..+++..+..
T Consensus 397 dNm~~LveDp~~la-----pfl~~Llp~lk~~~~d~-~P-EvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLA-----PFLPSLLPGLKENLDDA-VP-EVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHhhcCHHHHh-----hhHHHHhhHHHHHhcCC-Ch-hHHHHHHHHHHHHHHHHHhh
Confidence 6655543 44433 67777877777777654 22 12355677778888877764
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=97.80 E-value=0.14 Score=59.79 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=82.9
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcC-CC---hHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCC--------------C
Q 003214 12 GALSPNPEERKAAEHSLNQFQYT-PQ---HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP--------------H 73 (838)
Q Consensus 12 ~~ls~d~~~r~~Ae~~L~~~~~~-p~---f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~--------------~ 73 (838)
..-++|...|+.|=+.+-.+-.. -+ ++......+. +.+..+|.+.-+++.++-+.+=.. .
T Consensus 40 ~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~--S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~ 117 (746)
T PTZ00429 40 DLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAP--STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNS 117 (746)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCC
Confidence 33466777777777776654421 12 2223333332 348899999999988885533220 0
Q ss_pred CC-------C-CCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCCh--hHHHHHHHHhhhh---hH
Q 003214 74 EP-------N-EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWP--HLLDWVKHNLQDQ---QV 140 (838)
Q Consensus 74 ~~-------~-~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp--~ll~~l~~~l~s~---~~ 140 (838)
++ + ....-.++--..+-..+.+++.+.++-||+..+.|+.++.+.+ |+.-+ ++++.+.+++.++ -+
T Consensus 118 Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHH
Confidence 00 0 0111122233334444555566788999999999999998754 54322 3566677777665 35
Q ss_pred HHHHHHHHHHHHH
Q 003214 141 YGALFVLRILSRK 153 (838)
Q Consensus 141 ~~~L~~L~~i~~~ 153 (838)
.+|+.+|.+|.+.
T Consensus 197 ~nAl~aL~eI~~~ 209 (746)
T PTZ00429 197 SNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHHHh
Confidence 7888899998754
No 33
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.78 E-value=0.29 Score=62.69 Aligned_cols=684 Identities=13% Similarity=0.098 Sum_probs=316.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-------------CChHHHHHHHHHhcC-cChhhHHHHHHHHHHhhhhcC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQYT-------------PQHLVRLLQIIVDNN-CDLSVRQVASIHFKNFIAKNW 70 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~-------------p~f~~~Ll~i~~~~~-~~~~iR~~Aai~lKn~i~~~W 70 (838)
-|..+|. +.+.+.|..|=..|-.+..+ +|....|+.++.+.+ .+..++..|+..|+|.-...
T Consensus 103 pLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~- 178 (2102)
T PLN03200 103 PLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST- 178 (2102)
T ss_pred HHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc-
Confidence 3455553 45788899998888777542 677888999987643 24457888888998886432
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhC-CC-C--ChhHHHHHHHHhhhh---h-HHH
Q 003214 71 APHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADY-PE-Q--WPHLLDWVKHNLQDQ---Q-VYG 142 (838)
Q Consensus 71 ~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~-p~-~--Wp~ll~~l~~~l~s~---~-~~~ 142 (838)
.+. ...-.....-..+++++.++++.++...+.++..++...- +. . =-..++.++++++++ . ...
T Consensus 179 en~-------~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 179 DGF-------WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred cch-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence 110 0000111123356677777888888888888888876531 21 1 124688888888764 2 366
Q ss_pred HHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhH
Q 003214 143 ALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVF 222 (838)
Q Consensus 143 ~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~ 222 (838)
+..+|..++.. ..+.+..+.. ..-.|.|.+++......-..+.....++..+..++.++.- +.
T Consensus 252 AA~AL~nLAs~----s~e~r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg-g~---------- 314 (2102)
T PLN03200 252 AAGALEALSSQ----SKEAKQAIAD--AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG-GM---------- 314 (2102)
T ss_pred HHHHHHHHhcC----CHHHHHHHHH--CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC-Cc----------
Confidence 77777777753 1122221111 1124555554432110000000112234445555544331 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHH
Q 003214 223 NAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHL 302 (838)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~ 302 (838)
...++.+...+.. ..|.... -..-|++.-+..+ +..+. +.. ..+-. ......+.
T Consensus 315 ~~ll~~L~~ll~s-------~rd~~~~------ada~gALayll~l---~d~~~---~~~----~~i~~---~~v~~~LV 368 (2102)
T PLN03200 315 SALILYLGELSES-------PRSPAPI------ADTLGALAYALMV---FDSSA---EST----RAFDP---TVIEQILV 368 (2102)
T ss_pred hhhHHHHHHhhcc-------cchHHHH------HHHHhhHHHHHHh---cCCch---hhh----hhccc---cccHHHHH
Confidence 1222232222221 1111100 0001222222222 21110 000 00000 01112223
Q ss_pred HHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccc
Q 003214 303 NLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIED 382 (838)
Q Consensus 303 ~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d 382 (838)
+++.. . .+......+.+-+..++.++...+.+.. ...+. +++..+..+..|
T Consensus 369 ~Llr~---k--~p~~vqe~V~eALasl~gN~~l~~~L~~--~daik-~LV~LL~~~~~e--------------------- 419 (2102)
T PLN03200 369 KLLKP---R--DTKLVQERIIEALASLYGNAYLSRKLNH--AEAKK-VLVGLITMATAD--------------------- 419 (2102)
T ss_pred HHhCC---C--CCchhHHHHHHHHHHhcCChHHHHHHHh--ccchh-hhhhhhccCCHH---------------------
Confidence 33322 1 0111122334444444444433333321 01111 111222221111
Q ss_pred cCCHHHHHHHHHHHHHhhc--------ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc-c
Q 003214 383 LYSPRTASMDFVSELVRKR--------GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP-Y 453 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~--------~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~-~ 453 (838)
.+..+...|..+++.- ....++.++ +.|.. .+-..++.++.+++.++.+-.+... +
T Consensus 420 ---vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV----~LL~s--------~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 420 ---VQEELIRALSSLCCGKGGLWEALGGREGVQLLI----SLLGL--------SSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH----HHHcC--------CCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2333334444444321 112344444 34443 2446777888899988753221100 0
Q ss_pred -h-HHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 003214 454 -K-SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNF--RKALHSVVSGLRDPELPVRVDSVFALRSF 527 (838)
Q Consensus 454 -~-~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~ 527 (838)
. .-++. +...|.++++-+|..|+|+++..+... ++ ... ..+++.+++.|++.+..++..|+.||.++
T Consensus 485 ieaGaIP~-----LV~LL~s~~~~iqeeAawAL~NLa~~~--~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 485 TAAGGIPP-----LVQLLETGSQKAKEDSATVLWNLCCHS--EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0 01111 222456788899999999999997521 11 112 24677888899888888999999999999
Q ss_pred HHhcccccccccch-----------HHHHHHHHHHhhhhchhh-------HHHHHHHHHHhh---cccchhhHHHHHHHH
Q 003214 528 VEACRDLNEIRPIL-----------PQLLDEFFKLMNEVENED-------LVFTLETIVDKF---GEEMAPYALGLCQNL 586 (838)
Q Consensus 528 ~~~~~~~~~l~p~l-----------~~il~~L~~ll~~~~~~~-------l~~~l~~iv~~~---~~~i~p~~~~l~~~L 586 (838)
+...+ .+.+.+++ ...+..+..+++..+.++ -...+..+++-. .+.+...+..++..+
T Consensus 558 i~~~d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 558 VRTAD-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636 (2102)
T ss_pred Hhccc-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 86543 22222211 011111111111111000 001111111111 111111111111111
Q ss_pred ----------------HHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccC
Q 003214 587 ----------------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD 650 (838)
Q Consensus 587 ----------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~ 650 (838)
+..+..+...+.. + .+...-.+++.+.....+ .+...-+..-++|.+-..+...
T Consensus 637 ~a~~~d~~~avv~agaIpPLV~LLss~~~------~---v~keAA~AL~nL~~~~~~-~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 637 FSSRQDLCESLATDEIINPCIKLLTNNTE------A---VATQSARALAALSRSIKE-NRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCh------H---HHHHHHHHHHHHHhCCCH-HHHHHHHHcCCHHHHHHHHhCC
Confidence 1111222222111 1 233445556666654322 2222224566777788888888
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCHhh-hHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcc-cccccCCchHHHHH--H
Q 003214 651 GQEVFEEVLEIVSYMTFFSPTISLEM-WSLWPLMMEALADWAIDFFPNILVPLDNYISRGTA-HFLTCKEPDYQQSL--W 726 (838)
Q Consensus 651 ~~~~~~~~l~ll~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~-~~l~~~~~~~~~~l--~ 726 (838)
+.+..+.++..+.+++.......... ....|.+.+++.+.....-......|......++. +.+. .+.+.- +
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~----~~~~~~g~v 782 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLK----DSVQCRGTV 782 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHH----HHHHHhCcH
Confidence 88999999999999997653221111 24567788888665555666666666666655542 2121 121111 1
Q ss_pred HHHHHHhcCCCCCCCccCchhHHHHHHHHH-cccCc--ccch-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcc
Q 003214 727 SMVSSIMADKNLEDGDIEPAPKLIEVVFQN-CKGQV--DHWV-----EPYLRITVERLRRAEKSYLKCLLVQVIADALYY 798 (838)
Q Consensus 727 ~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~-~~~~~--~~~l-----~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~ 798 (838)
.-+..+|...+.+..+...+...+..+.+. -+.+. .+|- +.-+..+++.+ ...+|.+.-.-+.++.|+---
T Consensus 783 ~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 783 LALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhcc
Confidence 122334444444433333466666666663 11111 1111 12345555666 445666666667777766555
Q ss_pred ChHHHHHHHHh
Q 003214 799 NSSLTLSILHK 809 (838)
Q Consensus 799 ~~~~~~~~L~~ 809 (838)
.|...-..+..
T Consensus 862 ~~~~~~~~~~~ 872 (2102)
T PLN03200 862 QPVVLGDLIAN 872 (2102)
T ss_pred ChhHHHHHHhc
Confidence 56555555444
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.77 E-value=0.0032 Score=72.45 Aligned_cols=204 Identities=15% Similarity=0.176 Sum_probs=120.3
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHH-HHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-ALHSVV 506 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~-~~~~l~ 506 (838)
++...+-.|+.+++.++.. .+-+-+.+.|...+.+++|++|..|+.++.++... +|+.... +++.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~~~---------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~ 158 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIRTP---------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLK 158 (526)
T ss_dssp SSHHHHHHHHHHHHHH-SH---------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHH
T ss_pred CCHHHHHHHHhhhhhhccc---------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHh
Confidence 3778889999999887732 12233344566677889999999999999998763 3444555 789999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhH--HHHHH
Q 003214 507 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYA--LGLCQ 584 (838)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~--~~l~~ 584 (838)
+.+.|+++.|+.+|+.++..+ ... ++...+.++.++..|.+++...+.-....+++.+. .+...-.... ..+++
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i--~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~-~~~~~~~~~~~~~~~i~ 234 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI--KCN-DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLR-RYAPMEPEDADKNRIIE 234 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH--HCT-HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHT-TSTSSSHHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHH--ccC-cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHH-hcccCChhhhhHHHHHH
Confidence 999999999999999999998 221 23323777888888887775433222233333332 2222111112 23444
Q ss_pred HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHH
Q 003214 585 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSY 664 (838)
Q Consensus 585 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~ 664 (838)
.+.. ..++.. . .-.++++..++... ..+. +...+++.+...+.....+..--+++.+..
T Consensus 235 ~l~~----~l~s~~---------~---~V~~e~~~~i~~l~-~~~~----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 235 PLLN----LLQSSS---------P---SVVYEAIRLIIKLS-PSPE----LLQKAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp HHHH----HHHHHH---------H---HHHHHHHHHHHHHS-SSHH----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHH----Hhhccc---------c---HHHHHHHHHHHHhh-cchH----HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence 4433 222110 1 12456666655433 2222 335666666666665555455556666666
Q ss_pred hhhc
Q 003214 665 MTFF 668 (838)
Q Consensus 665 ~~~~ 668 (838)
+...
T Consensus 294 l~~~ 297 (526)
T PF01602_consen 294 LAQS 297 (526)
T ss_dssp HCCH
T ss_pred hhcc
Confidence 6543
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.041 Score=64.64 Aligned_cols=198 Identities=17% Similarity=0.204 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcc-hHHHHHHHhh
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY-KSELERMLVQ 463 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~-~~~~~~~l~~ 463 (838)
..|..+..++..+.+..+.+....+...+.+++-.+ .+.+...-+...++|..+|.+.....+.++- ...++.|+.
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~- 788 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLS- 788 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHH-
Confidence 356667788888888887666666666666766543 1222234456777777777655544433221 235667764
Q ss_pred cccccccCCCcchhhHHHHHHHhh----hccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQY----AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (838)
.|.+.+....+.++++-+..++.. .++. +.+.+..+++.+..+|.+...-++.+|+..++.++.... ...+.|
T Consensus 789 ~Isagl~gd~~~~~as~Ivai~~il~e~~~~l--d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p-e~~l~~ 865 (1176)
T KOG1248|consen 789 IISAGLVGDSTRVVASDIVAITHILQEFKNIL--DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP-EECLSP 865 (1176)
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-HHHHhh
Confidence 355555555566666644444332 3322 557899999999999999888899999999999999875 788999
Q ss_pred chHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhc-ccchhhHHHHHHHHHH
Q 003214 540 ILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLCQNLAA 588 (838)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~ 588 (838)
+++++|..++.++.+..... +-..++.++.+|+ +++.+|+++.-..+..
T Consensus 866 ~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~ 918 (1176)
T KOG1248|consen 866 HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLT 918 (1176)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHH
Confidence 99999999999998754432 6778899999998 4567777765555554
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.74 E-value=0.012 Score=66.55 Aligned_cols=330 Identities=15% Similarity=0.162 Sum_probs=166.4
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc-ccccc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL-NEIRP 539 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~-~~l~p 539 (838)
..+...|.++++.+|.-+++.+++.....-...+. -..+++.++.++.+++..|...|+.+|..++...... ..+.+
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 34444678899999999999999986522000011 2668899999999999999999999999999765311 12233
Q ss_pred chHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHH--HHHHHHHHHhcccCCCCCCChhHHHHHHHHHH
Q 003214 540 ILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQN--LAAAFWRCMNTAEADEDADDPGALAAVGCLRA 617 (838)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~--L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 617 (838)
.+ +..|-.++...+...-..+++.++...+.. |...+.+.. +.+.+.+..++ | | .+++..++++
T Consensus 160 ~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~~---d-----D-iLvqlnalel 225 (503)
T PF10508_consen 160 NL---LSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELDS---D-----D-ILVQLNALEL 225 (503)
T ss_pred ch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhcC---c-----c-HHHHHHHHHH
Confidence 32 666666666533334556666666654321 222222221 33322232221 1 1 4667788999
Q ss_pred HHHHHHhhcCChHHHHHH-HhhHHHHHHHHhccChh------hHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHH---
Q 003214 618 ISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQ------EVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEAL--- 687 (838)
Q Consensus 618 i~~i~~~~~~~~~~~~~l-~~~~~p~i~~~l~~~~~------~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~--- 687 (838)
+..+... ++ ...-+ ...+++.+...+..... -++...+.....+.... ++.+...+|.+.+.+
T Consensus 226 l~~La~~--~~--g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~---~~~v~~~~p~~~~~l~~~ 298 (503)
T PF10508_consen 226 LSELAET--PH--GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS---PQEVLELYPAFLERLFSM 298 (503)
T ss_pred HHHHHcC--hh--HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHH
Confidence 9888872 22 12222 24466666666654221 23455556666665431 223445556555443
Q ss_pred -hhhHhhhhhhhhhhhhhhhc--cCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccc
Q 003214 688 -ADWAIDFFPNILVPLDNYIS--RGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHW 764 (838)
Q Consensus 688 -~~~~~~~l~~~~~~L~~~i~--~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~ 764 (838)
++.+.......++.+....+ .|...+.. +.++-+..++..+.....+...+- +..+.+.+..++..-...-..-
T Consensus 299 ~~s~d~~~~~~A~dtlg~igst~~G~~~L~~-~~~~~~~~~l~~~~~~~~~~~~~l--k~r~l~al~~il~~~~~~~~~~ 375 (503)
T PF10508_consen 299 LESQDPTIREVAFDTLGQIGSTVEGKQLLLQ-KQGPAMKHVLKAIGDAIKSGSTEL--KLRALHALASILTSGTDRQDND 375 (503)
T ss_pred hCCCChhHHHHHHHHHHHHhCCHHHHHHHHh-hcchHHHHHHHHHHHHhcCCchHH--HHHHHHHHHHHHhcCCCCchHH
Confidence 33333344444444433221 12222212 112233334444333332221111 2345555555554333212222
Q ss_pred hHHHHHHHHHHHhh------------hhhhHHHHHHHHHHHHhhccChHHHHHHHHhcCchHHHH
Q 003214 765 VEPYLRITVERLRR------------AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVF 817 (838)
Q Consensus 765 l~~il~~~l~~l~~------------~~~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~~~~~~~~ 817 (838)
+..+.......+.+ ..-+.++...+.++..+ ...|-....++..-|+.+.++
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l-~~~~Wg~~~i~~~~gfie~ll 439 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQAL-AAQPWGQREICSSPGFIEYLL 439 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHH-hcCHHHHHHHHhCccHHhhhc
Confidence 22223332332221 12256676666665444 345555555555555544444
No 37
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.64 E-value=0.1 Score=62.84 Aligned_cols=351 Identities=15% Similarity=0.180 Sum_probs=194.6
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (838)
....|--|+.+++.+.+.=+..- ...++ +..|..-+.+++..||-+|.-++|+|.- ..++...++|..+.+.
T Consensus 829 ~ialRtkAlKclS~ive~Dp~vL-~~~dv----q~~Vh~R~~DssasVREAaldLvGrfvl---~~~e~~~qyY~~i~er 900 (1692)
T KOG1020|consen 829 AIALRTKALKCLSMIVEADPSVL-SRPDV----QEAVHGRLNDSSASVREAALDLVGRFVL---SIPELIFQYYDQIIER 900 (1692)
T ss_pred hHHHHHHHHHHHHHHHhcChHhh-cCHHH----HHHHHHhhccchhHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHhh
Confidence 57888889999998876411100 01111 2234445678899999999999999863 2567889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh--HH-------------------------
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED--LV------------------------- 561 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~--l~------------------------- 561 (838)
+.|+...||-.+.+-++.+|+.. |-+..+.+.+.+++..++.|+ +-
T Consensus 901 IlDtgvsVRKRvIKIlrdic~e~-------pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~ 973 (1692)
T KOG1020|consen 901 ILDTGVSVRKRVIKILRDICEET-------PDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKA 973 (1692)
T ss_pred cCCCchhHHHHHHHHHHHHHHhC-------CChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHH
Confidence 99999999999999999998875 233333334444443332211 11
Q ss_pred ----------------------HHHHHHHHhh-----cccchhhHHHHHHHHHHHHHHHHh----cccCCCCCCChhHHH
Q 003214 562 ----------------------FTLETIVDKF-----GEEMAPYALGLCQNLAAAFWRCMN----TAEADEDADDPGALA 610 (838)
Q Consensus 562 ----------------------~~l~~iv~~~-----~~~i~p~~~~l~~~L~~~~~~~~~----~~~~d~~~~~~~~~~ 610 (838)
.++..++... ...+.|.+...+.+....+..... +-+.+...+++.
T Consensus 974 ~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~--- 1050 (1692)
T KOG1020|consen 974 RKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEES--- 1050 (1692)
T ss_pred HhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccc---
Confidence 1111111111 112333333333222221111111 001000000111
Q ss_pred HHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHhcc-ChhhHHHHHHHHHHHhhhcCCCCCHh-hhHhHHHHHHHH
Q 003214 611 AVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTT-DGQEVFEEVLEIVSYMTFFSPTISLE-MWSLWPLMMEAL 687 (838)
Q Consensus 611 ~~~~l~~i~~i~~~~~~~~~~~~-~l~~~~~p~i~~~l~~-~~~~~~~~~l~ll~~~~~~~~~~~~~-l~~l~~~l~~~~ 687 (838)
....+.+++++.-.....|..+. .....+.|++..--.. +...|..+..+++..++-..+.++.. +..+=..++..+
T Consensus 1051 ~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i 1130 (1692)
T KOG1020|consen 1051 EVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRI 1130 (1692)
T ss_pred hhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 13455666666665555676665 5667788888776332 44589999999999888554455543 345555666665
Q ss_pred hhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcC-C-C-CCCCccC------chhHHHHHHHHHcc
Q 003214 688 ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD-K-N-LEDGDIE------PAPKLIEVVFQNCK 758 (838)
Q Consensus 688 ~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~-~-~-~~~~~~~------~~~~ll~~i~~~~~ 758 (838)
-..+.-.+.+++++|.+.+.+-.. +......+++.+-+.+.. . . .+..+.. -...+++.+.++..
T Consensus 1131 ~k~g~a~V~~~vsCl~sl~~k~~~------~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfd 1204 (1692)
T KOG1020|consen 1131 VKMGMATVVEAVSCLGSLATKRTD------GAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFD 1204 (1692)
T ss_pred HhcchHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhcc
Confidence 555666777888888776665322 224667777777777652 1 1 1221111 11233444444322
Q ss_pred cC--------cccchHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHhhccChHHH
Q 003214 759 GQ--------VDHWVEPYLRITVERL---RRAEKSYLKCLLVQVIADALYYNSSLT 803 (838)
Q Consensus 759 ~~--------~~~~l~~il~~~l~~l---~~~~~~~~~~~~l~v~~~~~~~~~~~~ 803 (838)
-. ..+....+.+.++..| ...+...+++..+.-..+....+|..+
T Consensus 1205 f~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1205 FPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLF 1260 (1692)
T ss_pred CCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhh
Confidence 10 1122334555554444 334456677766666666666777654
No 38
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.61 E-value=0.5 Score=60.66 Aligned_cols=372 Identities=16% Similarity=0.169 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHH---HHHHh
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL---ERMLV 462 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~---~~~l~ 462 (838)
.+..|...|..+......+.++++.. ++.. ++...+.-++.++|.+....... +..... ..-+
T Consensus 546 ~q~~Aa~AL~nLi~~~d~~~I~~Lv~----LLls--------dd~~~~~~aL~vLgnIlsl~~~~-d~~~~g~~~~ggL- 611 (2102)
T PLN03200 546 GQEIAAKTLTKLVRTADAATISQLTA----LLLG--------DLPESKVHVLDVLGHVLSVASLE-DLVREGSAANDAL- 611 (2102)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHH----HhcC--------CChhHHHHHHHHHHHHHhhcchh-HHHHHhhhccccH-
Confidence 34566777777776655555544433 4432 24466666788888775432211 000000 0111
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~ 540 (838)
..+...+.++++-.+..|+|+++.+.....+.. -.....++.++..|++.+..++..||.||.++..... .+....+
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~ 690 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY 690 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 123334567889999999999999976431111 1235667888888888888899999999999997543 2222222
Q ss_pred h-HHHHHHHHHHhhhhchhhH---HHHHHHHHHhhcc--cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHH
Q 003214 541 L-PQLLDEFFKLMNEVENEDL---VFTLETIVDKFGE--EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (838)
Q Consensus 541 l-~~il~~L~~ll~~~~~~~l---~~~l~~iv~~~~~--~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (838)
+ ...+..|+++++..+.+.. +.+|..+...-.. ++. ....+..|+ +++.++.. + .+...
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~--~~~~I~~Lv----~lLr~G~~-~--------~k~~A 755 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL--AEDIILPLT----RVLREGTL-E--------GKRNA 755 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH--hcCcHHHHH----HHHHhCCh-H--------HHHHH
Confidence 2 2356667777776544433 4444444432211 111 112233444 34544321 1 12233
Q ss_pred HHHHHHHHHhhcCChH--HHHHHHhhHHHHHHHHhccChhhH--HHHHHHHHHHhhhcC--CCCCHhhhHhHHHHHHHHh
Q 003214 615 LRAISTILESVSRLPH--LFVQIEPTLLPIMRRMLTTDGQEV--FEEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALA 688 (838)
Q Consensus 615 l~~i~~i~~~~~~~~~--~~~~l~~~~~p~i~~~l~~~~~~~--~~~~l~ll~~~~~~~--~~~~~~l~~l~~~l~~~~~ 688 (838)
..++..+.+.-..+.. .+-+....+.|++... +..+.+- .-++++.+..+.+.. ...++.-|..|-
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L-~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~------- 827 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLL-NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLA------- 827 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHH-hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHH-------
Confidence 4444444444321111 1222345566655554 4333333 236888888888742 344444454431
Q ss_pred hhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHH
Q 003214 689 DWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPY 768 (838)
Q Consensus 689 ~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~i 768 (838)
+ .+..+.+|..++..|.+ ...+.-++++.++-.+. ..+++.++-..++ -
T Consensus 828 ----e-~p~~l~~l~~~l~~~~p--------~~~~kai~il~~~~~~~----------~~~~~~~~~~~~~--------~ 876 (2102)
T PLN03200 828 ----E-VPSSLEPLVRCLAEGHP--------LVQDKAIEILSRLCRDQ----------PVVLGDLIANASK--------C 876 (2102)
T ss_pred ----h-ccCchHHHHHHHHcCCh--------HHHHHHHHHHHHHhccC----------hhHHHHHHhcccc--------h
Confidence 1 12333333223233333 33345556666665421 1334444444332 3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHHHHHHHHhcCchHHHHHHHHHhhhh
Q 003214 769 LRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQ 826 (838)
Q Consensus 769 l~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~~~~~~~~~~w~~~~~~ 826 (838)
+..+-.|+-++.+..+++.-..++....-.|-+..+..|++.|++..++....+.+..
T Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 877 ISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred HHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhc
Confidence 4455556655555566655544444555678889999999999888888777765543
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.53 E-value=0.00037 Score=58.44 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=65.6
Q ss_pred hhHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003214 477 RAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (838)
|..+++.++..+....+ -.+.+..+++.++.++.|++..||.+||.||-+++... ++.+.|+++++.+.|++++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 56777778777543211 23678999999999999999999999999999999885 5788889999999999999876
Q ss_pred ch
Q 003214 556 EN 557 (838)
Q Consensus 556 ~~ 557 (838)
+.
T Consensus 81 d~ 82 (97)
T PF12755_consen 81 DE 82 (97)
T ss_pred ch
Confidence 54
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=97.51 E-value=0.13 Score=60.16 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=65.2
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH--HHHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSV 505 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l 505 (838)
.|...|--|+..++++... .+-+.+...+...+.+++|+||..|+.++.+.... +++.. ...++.+
T Consensus 117 ~Np~IRaLALRtLs~Ir~~---------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~~~~~~~L 184 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVS---------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQQDFKKDL 184 (746)
T ss_pred CCHHHHHHHHHHHHcCCcH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---CcccccccchHHHH
Confidence 3778888888888876432 12222333455566889999999999999997542 22221 2345666
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 506 VSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 506 ~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
...|.|+++.|...|..+|..+.+..
T Consensus 185 ~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 185 VELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 66788999999999999999997654
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0089 Score=64.95 Aligned_cols=261 Identities=17% Similarity=0.224 Sum_probs=157.3
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCc-c-hHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhcc--ccCChhHHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEP-Y-KSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI--NFSDQNNFRKALHS 504 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~-~-~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~--~~~~~~~~~~~~~~ 504 (838)
+...+.-+-+++..+|.+-.+... + ...-.+.|.. ++.+++.-++..|.|.+|.++.- .+++.-.-..+++.
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~----Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~p 198 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ----LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDP 198 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH----HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHH
Confidence 455566666788888876543211 0 0111122222 45789999999999999999752 12221123456667
Q ss_pred HHhcCCCCCC-chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHH---hhcccchhhH-
Q 003214 505 VVSGLRDPEL-PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVD---KFGEEMAPYA- 579 (838)
Q Consensus 505 l~~~l~~~~~-~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~---~~~~~i~p~~- 579 (838)
++..+..++. ...-.++++|.++|..++..+.+ ..+.+++..|..++...+.+.+.++.-++.. .-.+.+ .+.
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~i-q~vi 276 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKI-QMVI 276 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH-HHHH
Confidence 7777765543 45568999999999997522222 3567788888899988877766555544432 222222 111
Q ss_pred -HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhcc-ChhhHHHH
Q 003214 580 -LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT-DGQEVFEE 657 (838)
Q Consensus 580 -~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~-~~~~~~~~ 657 (838)
..++..|+. ++...+. -.....+.+++.|+.. .+.....-+-...+|.+..++.. +....-.+
T Consensus 277 ~~gvv~~LV~----lL~~~~~---------~v~~PaLRaiGNIvtG--~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 277 DAGVVPRLVD----LLGHSSP---------KVVTPALRAIGNIVTG--SDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred HccchHHHHH----HHcCCCc---------ccccHHHhhccceeec--cHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 123444544 4433221 1234567777776544 33333333567889999999984 44457788
Q ss_pred HHHHHHHhhhcCC-CCCHhh-hHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCc
Q 003214 658 VLEIVSYMTFFSP-TISLEM-WSLWPLMMEALADWAIDFFPNILVPLDNYISRGT 710 (838)
Q Consensus 658 ~l~ll~~~~~~~~-~~~~~l-~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~ 710 (838)
++=.+++++...+ ++..-+ -.++|.+++++++.+++.-.+..-.+.|....|.
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9989999886442 222112 2688999999876666666666666666655554
No 42
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.32 E-value=0.43 Score=53.35 Aligned_cols=175 Identities=15% Similarity=0.221 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhhc-CCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCC
Q 003214 435 GALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRD 511 (838)
Q Consensus 435 a~l~~lg~i~~~l~~-~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~l~~ 511 (838)
..+..+|.++..+.. .++| +.++ ...++-.|+++.+-+|-+|+.++|..+.+.-.. +..+..+=..+...|..
T Consensus 777 vml~gfg~V~~~lg~r~kpy---lpqi-~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge 852 (1172)
T KOG0213|consen 777 VMLLGFGTVVNALGGRVKPY---LPQI-CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE 852 (1172)
T ss_pred hhhhhHHHHHHHHhhccccc---hHHH-HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc
Confidence 345677888777654 2333 3333 345777789999999999999999998753111 22334444456677877
Q ss_pred CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch---hhHHHHHHHHHHhhcccchhh-HHHHHHHHH
Q 003214 512 PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPY-ALGLCQNLA 587 (838)
Q Consensus 512 ~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~-~~~l~~~L~ 587 (838)
..+-|--.-..|++.+++... -....|=+.+++..|..+++.-.. +.-...++.|..+..+.+.+- -..|+-.|+
T Consensus 853 eypEvLgsILgAikaI~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl 931 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL 931 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 666666666667777666553 334445566666666666664322 235566777777776655431 112333444
Q ss_pred HHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC
Q 003214 588 AAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 627 (838)
Q Consensus 588 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~ 627 (838)
. +++-|+ +.+- -...++++-|.++++.
T Consensus 932 e-lLkahk-----------K~iR-Raa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 932 E-LLKAHK-----------KEIR-RAAVNTFGYIAKAIGP 958 (1172)
T ss_pred H-HHHHHH-----------HHHH-HHHHhhhhHHHHhcCH
Confidence 3 122232 2332 2466777777777764
No 43
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.033 Score=61.69 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=87.9
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
.|+.++++.-|++|-||..++=+.. .+=|+.++..++.+...|.|+|+.|+.+|+..++.+.... +....|..|.
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvF---LkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--PknyL~LAP~ 222 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVF---LKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQNYLQLAPL 222 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHH---HhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--CcccccccHH
Confidence 3444667888999999988874432 1234789999999999999999999999999999998875 4445566666
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 003214 544 LLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623 (838)
Q Consensus 544 il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~ 623 (838)
+. ++|.+..+. ..|=.++.-|+ .++|+-+.+-..|...+.+++.+. .+-.-+.||+.+++.
T Consensus 223 ff----kllttSsNN---WmLIKiiKLF~-aLtplEPRLgKKLieplt~li~sT-----------~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 223 FY----KLLVTSSNN---WVLIKLLKLFA-ALTPLEPRLGKKLIEPITELMEST-----------VAMSLLYECVNTVVA 283 (877)
T ss_pred HH----HHHhccCCC---eehHHHHHHHh-hccccCchhhhhhhhHHHHHHHhh-----------HHHHHHHHHHHHhee
Confidence 44 455443332 22223333333 255665566666655555555421 112335666666665
Q ss_pred h
Q 003214 624 S 624 (838)
Q Consensus 624 ~ 624 (838)
.
T Consensus 284 ~ 284 (877)
T KOG1059|consen 284 V 284 (877)
T ss_pred e
Confidence 4
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.23 E-value=0.00092 Score=56.08 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=70.3
Q ss_pred hHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcC
Q 003214 432 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL 509 (838)
Q Consensus 432 ~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l 509 (838)
.|.|++.++.+++.++.+. ....++.++. .|+..+.++++.+|.-||-.+...++.. +.. ..+.+++..+.+.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~--~~~~l~~Il~-pVL~~~~D~d~rVRy~AcEaL~ni~k~~-~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD--ISKYLDEILP-PVLKCFDDQDSRVRYYACEALYNISKVA-RGEILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh--HHHHHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988764 3344555543 4667788999999999999999987642 222 46899999999999
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 003214 510 RDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 510 ~~~~~~V~~~A~~al~~~~ 528 (838)
.|+++.||..| ..|.+++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred cCCchhHHHHH-HHHHHHh
Confidence 99999999666 5555543
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0033 Score=68.21 Aligned_cols=222 Identities=14% Similarity=0.204 Sum_probs=127.8
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchH---HHHHHHhhcccccccCCCc-chhhHHHHHHHhhhccc-cCCh-hHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKS---ELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHIN-FSDQ-NNFRKAL 502 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~---~~~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~-~~~~-~~~~~~~ 502 (838)
+-..+|-+.+|+|.++.....-.++.- -+.+++ ..+..+.+ .+.+.+.|+++.++... +.++ +....++
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl-----~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL-----RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH-----HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 668899999999999976433222111 122222 12233444 57889999999998754 3222 6789999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHhhhhchhhHHHHHHHHHH--hhcccchhhH
Q 003214 503 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENEDLVFTLETIVD--KFGEEMAPYA 579 (838)
Q Consensus 503 ~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~l~~~l~~iv~--~~~~~i~p~~ 579 (838)
+.+..++.+.|.-|...||+|+..+.+..+ +.+.-.+ -.++..|..++...+.....-+|.++.. ...+.-+..+
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n--e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSN--EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCh--HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence 999999999999999999999999998864 3332222 2355566667766544433334444332 1111111100
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHH
Q 003214 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 659 (838)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l 659 (838)
+-..+.+.+..+..+... ...+....=+|+.|.. |....+-.-+...++|.+-.+++....+.--++.
T Consensus 318 --i~~~~L~~l~~ll~~s~~--------~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 318 --INSGALPVLSNLLSSSPK--------ESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred --HhcChHHHHHHHhccCcc--------hhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 111222223333332111 1112222333444433 2222333335578999999999888877887888
Q ss_pred HHHHHhhhcC
Q 003214 660 EIVSYMTFFS 669 (838)
Q Consensus 660 ~ll~~~~~~~ 669 (838)
=.+++++...
T Consensus 386 waIsN~ts~g 395 (514)
T KOG0166|consen 386 WAISNLTSSG 395 (514)
T ss_pred HHHHhhcccC
Confidence 7777776433
No 46
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.2 Score=54.33 Aligned_cols=217 Identities=13% Similarity=0.143 Sum_probs=118.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh--hHHHHHHHHHHhh
Q 003214 494 DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIVDKF 571 (838)
Q Consensus 494 ~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~--~l~~~l~~iv~~~ 571 (838)
+....+.+++-++.+++|++..||.+||.++-+++... +..+.+|.+.+...++++..+.+.. .-...+..++...
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~--k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdI 155 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA--KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDI 155 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh--ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHh
Confidence 33578999999999999999999999999999999886 5888899999999999999876543 3445555554422
Q ss_pred cccc--hhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhcc
Q 003214 572 GEEM--APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 649 (838)
Q Consensus 572 ~~~i--~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~ 649 (838)
-.+- +=..+.+++-|-.. +. ..+ ++.+..+++.+..+-..-. -+. -+.-+.+++.+-..+..
T Consensus 156 Vte~~~tFsL~~~ipLL~er---iy---~~n-------~~tR~flv~Wl~~Lds~P~--~~m-~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRER---IY---VIN-------PMTRQFLVSWLYVLDSVPD--LEM-ISYLPSLLDGLFNMLSD 219 (675)
T ss_pred ccccccccCHHHHHHHHHHH---Hh---cCC-------chHHHHHHHHHHHHhcCCc--HHH-HhcchHHHHHHHHHhcC
Confidence 1111 11233444333321 11 112 3455666666655533311 111 22335666666666655
Q ss_pred Chhh---HHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHH
Q 003214 650 DGQE---VFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLW 726 (838)
Q Consensus 650 ~~~~---~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~ 726 (838)
...+ ..+.++.=+..-+++.| -+-.+.+..+.+..-.++.....-...+.-+..|+..++..++ .+...++
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P-~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-----~~~s~il 293 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSP-SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-----LYLSGIL 293 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCc-cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-----hhhhhhh
Confidence 4433 33444322222222222 1111222222222222221111122335556677777777766 4666555
Q ss_pred HHHHHHhc
Q 003214 727 SMVSSIMA 734 (838)
Q Consensus 727 ~~~~~~l~ 734 (838)
+.+-.++.
T Consensus 294 ~~iLpc~s 301 (675)
T KOG0212|consen 294 TAILPCLS 301 (675)
T ss_pred hhcccCCC
Confidence 55444443
No 47
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.07 E-value=0.22 Score=55.36 Aligned_cols=303 Identities=9% Similarity=0.100 Sum_probs=146.5
Q ss_pred CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 003214 472 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (838)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (838)
.++-.+.=|..+|.+|-.. | |+.-...+.+++.+..|.|..||..|.+.|-.+|.+.. -+++.+.+.|.++
T Consensus 34 g~~k~K~Laaq~I~kffk~-F--P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~------~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH-F--PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP------EHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh-C--hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH------HHHhHHHHHHHHH
Confidence 5677889999999998763 3 46778999999999999999999999999999998742 3677888888888
Q ss_pred hhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChH-
Q 003214 552 MNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPH- 630 (838)
Q Consensus 552 l~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~- 630 (838)
++.-+..++..+=.+++..+..+-.--...++.++. .....| ...+..++..|..=+..+...--
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~-------~~~~~d-------e~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE-------SSKSGD-------EQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS--------HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcccCc-------hHHHHHHHHHHHHHHhhCcHHHhh
Confidence 886555555544455555444332222222332222 111122 23566777777766666643210
Q ss_pred HHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC-CCCCHhhhHhHHHHHHHH--hh----hHhhhhhhhhhhhh
Q 003214 631 LFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEAL--AD----WAIDFFPNILVPLD 703 (838)
Q Consensus 631 ~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~~~--~~----~~~~~l~~~~~~L~ 703 (838)
.-..++..+...+..+++.=..+=.+-.++++..+-.+. ..-.+...++++.+.+-. .. .+.+.+..++.++.
T Consensus 171 p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~ 250 (556)
T PF05918_consen 171 PQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLR 250 (556)
T ss_dssp --HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHH
Confidence 013477889999999985311122223334444432211 112234556666665432 11 11234444444443
Q ss_pred hhhccCcccccccCCchHHHHHHHH-HHHHhcCCCCCCCccCchhHHHHHHHHHccc----CcccchHHHHHHHHHHHhh
Q 003214 704 NYISRGTAHFLTCKEPDYQQSLWSM-VSSIMADKNLEDGDIEPAPKLIEVVFQNCKG----QVDHWVEPYLRITVERLRR 778 (838)
Q Consensus 704 ~~i~~~~~~~l~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~----~~~~~l~~il~~~l~~l~~ 778 (838)
.-+-+.... .....+++. +.+++ |..++-+...=.++|-.+.+.++- +....++.+++.+...+-.
T Consensus 251 ~Alp~fs~~-------v~Sskfv~y~~~kvl--P~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~ 321 (556)
T PF05918_consen 251 QALPFFSRG-------VSSSKFVNYMCEKVL--PKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPS 321 (556)
T ss_dssp HHGGG-BTT-------B--HHHHHHHHHHTC--CCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS--
T ss_pred HhhHHhcCC-------CChHHHHHHHHHHhc--CChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCC
Confidence 322121111 122344443 45555 333332222334555555555442 1334555555555444432
Q ss_pred -hhhhHHHHH----HHHHHHHhhccChHHHHHH
Q 003214 779 -AEKSYLKCL----LVQVIADALYYNSSLTLSI 806 (838)
Q Consensus 779 -~~~~~~~~~----~l~v~~~~~~~~~~~~~~~ 806 (838)
.+.+.+.-+ ++..|-.+....|..+-.+
T Consensus 322 ~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~l 354 (556)
T PF05918_consen 322 KKTEPKLQFSYVECLLYAFHQLARKSPNSLNFL 354 (556)
T ss_dssp --------HHHHHHHHHHHHHHHTT-THHHH--
T ss_pred CCCCCcccchHhhHHHHHHHHHhhhCcchhhhH
Confidence 233333333 3445555555677755444
No 48
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.78 Score=50.82 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=113.6
Q ss_pred CC-hHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCC
Q 003214 1 MD-LPSLALILQGAL-SPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (838)
Q Consensus 1 MD-~~~l~~~L~~~l-s~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~ 78 (838)
|+ ..+|..+....+ +.|+..|.+||+.|.++..+|++++.+.-++.+.+. +.-..+|+..|-+.+.++=
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-pYs~mlAst~L~Klvs~~t-------- 71 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-PYSQMLASTCLMKLVSRKT-------- 71 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHcCCC--------
Confidence 45 566666666655 479999999999999999999999999888877554 4566778888887776554
Q ss_pred CCCChhhHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHhhCCC------CChhHHHHHHHHhhhh---hHHHHHH
Q 003214 79 QKISQVDKDMVRDHILVFVAQVP----PLLRVQLGECLKTIIHADYPE------QWPHLLDWVKHNLQDQ---QVYGALF 145 (838)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~~~----~~i~~~~~~~i~~Ia~~d~p~------~Wp~ll~~l~~~l~s~---~~~~~L~ 145 (838)
.+|-+.|-.||+-+++.+.... +-+-..++..+++|-+..|-+ ..-+.+.++...++.+ .-..|+.
T Consensus 72 -~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 72 -PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQ 150 (1082)
T ss_pred -CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHH
Confidence 3999999999999999997643 346678888889998887752 2457888888888876 3356788
Q ss_pred HHHHHHHHcc
Q 003214 146 VLRILSRKYE 155 (838)
Q Consensus 146 ~L~~i~~~~~ 155 (838)
+|.+++.+..
T Consensus 151 iLsqLvqemN 160 (1082)
T KOG1410|consen 151 ILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHhh
Confidence 9999998774
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.99 E-value=0.16 Score=55.42 Aligned_cols=252 Identities=12% Similarity=0.122 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHhhhhchhh--HHHHHHHHHHhhcccc
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEM 575 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~~~~--l~~~l~~iv~~~~~~i 575 (838)
+.+...+++.+.|+..|-|..++.+..+.+.... ...+.. .-..+++.++..+++.+++. ++.+.+++....+-..
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg-~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~ 598 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLG-RLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG 598 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcc-cccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc
Confidence 4456677777788777788888888888777654 222222 33456666666666654432 4444555554455556
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHH
Q 003214 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (838)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~ 655 (838)
.||...+++.... .+.+...| ...-+......++.++.++++... ...+=.++.+.+..+..+.+
T Consensus 599 kp~l~~ivStiL~----~L~~k~p~------vR~~aadl~~sl~~vlk~c~e~~~-----l~klg~iLyE~lge~ypEvL 663 (975)
T COG5181 599 KPHLSMIVSTILK----LLRSKPPD------VRIRAADLMGSLAKVLKACGETKE-----LAKLGNILYENLGEDYPEVL 663 (975)
T ss_pred CcchHHHHHHHHH----HhcCCCcc------HHHHHHHHHHHHHHHHHhcchHHH-----HHHHhHHHHHhcCcccHHHH
Confidence 7888888876664 44432211 112223445555566666654321 13333444444555555666
Q ss_pred HHHHHHHHHhhhcC--CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHh
Q 003214 656 EEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIM 733 (838)
Q Consensus 656 ~~~l~ll~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l 733 (838)
..++.-++++.... ....|...+++|.+..++.+--.....+.+.++.-....+|+.+-.. +++..-|+.+.-+-
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~r---EWMRIcfeLvd~Lk 740 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVR---EWMRICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHH
Confidence 66666666554422 34455556666766666543223344555566665666676643321 56666666655443
Q ss_pred cCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh
Q 003214 734 ADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (838)
Q Consensus 734 ~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~ 778 (838)
.. +.+- ...|..-++.|-...|. ++++..++..|..
T Consensus 741 s~-nKei--RR~A~~tfG~Is~aiGP------qdvL~~LlnnLkv 776 (975)
T COG5181 741 SW-NKEI--RRNATETFGCISRAIGP------QDVLDILLNNLKV 776 (975)
T ss_pred Hh-hHHH--HHhhhhhhhhHHhhcCH------HHHHHHHHhcchH
Confidence 31 1111 12233444444444443 2566666666654
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.87 E-value=0.00074 Score=50.36 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=42.6
Q ss_pred cchhhHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 003214 474 GHLRAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~ 527 (838)
|.+|..|+|.+|+.+..... .......+++.++..|+|++..||..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45899999999997643211 1146789999999999988889999999999764
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.82 E-value=0.34 Score=54.86 Aligned_cols=291 Identities=13% Similarity=0.103 Sum_probs=155.8
Q ss_pred hHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHhhhhc
Q 003214 478 AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILPQLLDEFFKLMNEVE 556 (838)
Q Consensus 478 ~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~ 556 (838)
.-+|.++.++-+-. ......+.+.+.+..+|.++++.||..|+.++.+.+++.. ....- .=..++..++.++.+.+
T Consensus 56 ~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~--~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 56 ELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE--GAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH--HHHHHhcCccHHHHHHHHHcCCc
Confidence 45566666654322 1224478888899999999999999999999999987753 11111 11456777777777655
Q ss_pred hhhHHHHHHHHHHhhcccchhhHHHH-----HHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHH
Q 003214 557 NEDLVFTLETIVDKFGEEMAPYALGL-----CQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHL 631 (838)
Q Consensus 557 ~~~l~~~l~~iv~~~~~~i~p~~~~l-----~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~ 631 (838)
.+....++..+..-.+. .+....+ ...|. ++..+. + ...+..+++++..+... +++.
T Consensus 133 ~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~----~l~~~~--~-------~~vR~Rv~el~v~i~~~---S~~~ 194 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLK----SLMSQS--S-------DIVRCRVYELLVEIASH---SPEA 194 (503)
T ss_pred HHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHH----HHHhcc--C-------HHHHHHHHHHHHHHHhc---CHHH
Confidence 44333333333222221 1222233 33333 233321 1 24466677776666443 4444
Q ss_pred HHHHH-hhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhh--HhHHHHHHHHhhhHh------hhhhhhhhhh
Q 003214 632 FVQIE-PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAI------DFFPNILVPL 702 (838)
Q Consensus 632 ~~~l~-~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~------~~l~~~~~~L 702 (838)
...+. .-+++.+-..+..++.-+.-.+++++..+.. .+.-...+. .+++.+.+.+.+... -+++..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 43322 2366666666666655566799999999986 222222232 477888887643222 2556666666
Q ss_pred hhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC--cccchHHHHHHHHHHHhh--
Q 003214 703 DNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--VDHWVEPYLRITVERLRR-- 778 (838)
Q Consensus 703 ~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~--~~~~l~~il~~~l~~l~~-- 778 (838)
.+....++..+.+ ....+++.+..++.+. +......|+..+..+-....|. +...-++-+..++..+..
T Consensus 274 g~la~~~~~~v~~-----~~p~~~~~l~~~~~s~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 274 GNLARVSPQEVLE-----LYPAFLERLFSMLESQ--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred HHHHhcChHHHHH-----HHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 6665556666653 1223333333444322 2222345666666665443332 101112333444444433
Q ss_pred -hhhhHHHHHHHHHHHHhhc
Q 003214 779 -AEKSYLKCLLVQVIADALY 797 (838)
Q Consensus 779 -~~~~~~~~~~l~v~~~~~~ 797 (838)
.....++...+..+...+.
T Consensus 347 ~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILT 366 (503)
T ss_pred cCCchHHHHHHHHHHHHHHh
Confidence 1234577777777777653
No 52
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=1.2 Score=49.36 Aligned_cols=348 Identities=14% Similarity=0.220 Sum_probs=182.9
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc-chHHHHHHHhhcccccccCC
Q 003214 394 VSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP-YKSELERMLVQHVFPEFSSP 472 (838)
Q Consensus 394 l~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~-~~~~~~~~l~~~v~p~l~~~ 472 (838)
........|.+.+..+++.-.+.+++. .+-..|++.....|..+.++....+ ....++.++ ..+..|
T Consensus 41 ~~~~~~~~~~~~v~~l~~~~~~~l~~~-------~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~-----~~~~tp 108 (569)
T KOG1242|consen 41 GEAAINQHGDQNVLNLKPCFEQRLNSL-------HNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILL-----EELDTP 108 (569)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc-------hhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHH-----HhcCCC
Confidence 334444455555444554444455431 2668899999999999998864322 122233333 345667
Q ss_pred CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (838)
.+.+++...-|+.-+.. ..+. ..-..+...+.++++.+...=|..|+..+..++.... .+.+.++ .++..+....
T Consensus 109 s~~~q~~~~~~l~~~~~-~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~~~~~~--~~l~~l~~ai 183 (569)
T KOG1242|consen 109 SKSVQRAVSTCLPPLVV-LSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IESLKEF--GFLDNLSKAI 183 (569)
T ss_pred cHHHHHHHHHHhhhHHH-Hhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hhhhhhh--hHHHHHHHHh
Confidence 88888888888876643 1111 2235566666777776666678888888888888763 3444332 3455555555
Q ss_pred hhhch---hh-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhc---cc----------CCCC------------C
Q 003214 553 NEVEN---ED-LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT---AE----------ADED------------A 603 (838)
Q Consensus 553 ~~~~~---~~-l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~---~~----------~d~~------------~ 603 (838)
+.-++ .+ ..-+.+......+....||...+...+...|....+. .. -++. -
T Consensus 184 ~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l 263 (569)
T KOG1242|consen 184 IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSL 263 (569)
T ss_pred cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHH
Confidence 43221 22 3334455555667777787777776666544221100 00 0000 0
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHH
Q 003214 604 DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLM 683 (838)
Q Consensus 604 ~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l 683 (838)
.+.++......++.++.+..+ .|.......+.++|.+..++.....+.-+.+...+..+... .-.|.+..+.|.+
T Consensus 264 ~~~kWrtK~aslellg~m~~~---ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv--idN~dI~~~ip~L 338 (569)
T KOG1242|consen 264 LEAKWRTKMASLELLGAMADC---APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV--IDNPDIQKIIPTL 338 (569)
T ss_pred HHHhhhhHHHHHHHHHHHHHh---chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 001111222233333322222 23334445677888888888766666666666555444321 1134566777777
Q ss_pred HHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcc--cCc
Q 003214 684 MEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK--GQV 761 (838)
Q Consensus 684 ~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~--~~~ 761 (838)
++++.+ ...+.++.+..| +...|+..-+++-+..+..++.+-+.....+.. ..++.++..+..-.. ..+
T Consensus 339 ld~l~d-p~~~~~e~~~~L------~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k--r~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 339 LDALAD-PSCYTPECLDSL------GATTFVAEVDAPSLALMVPILKRGLAERSTSIK--RKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred HHHhcC-cccchHHHHHhh------cceeeeeeecchhHHHHHHHHHHHHhhccchhh--hhHHHHHHHHHHhhcCHHHH
Confidence 777743 222444444433 334444433445667777788888764433221 234444454444442 224
Q ss_pred ccchHHHHHHH
Q 003214 762 DHWVEPYLRIT 772 (838)
Q Consensus 762 ~~~l~~il~~~ 772 (838)
.++++.++..+
T Consensus 410 apfl~~Llp~l 420 (569)
T KOG1242|consen 410 APFLPSLLPGL 420 (569)
T ss_pred hhhHHHHhhHH
Confidence 45555544433
No 53
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.78 E-value=0.049 Score=59.67 Aligned_cols=184 Identities=17% Similarity=0.259 Sum_probs=115.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhHHHHHHHHhccC
Q 003214 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL-PHLFVQIEPTLLPIMRRMLTTD 650 (838)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~-~~~~~~l~~~~~p~i~~~l~~~ 650 (838)
++++.|++.++..+|... ++.....| +. .++.|+-.++..+++. .+....+.+.+..++..+..+.
T Consensus 17 ~~di~p~~~~ll~~Lf~~----i~~~~s~E-----Ne----ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFAL----IEKPGSAE-----NE----YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHHH----HHTT-STC------H----HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHHH----HhcCCCcc-----ch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357899999999999973 33322211 11 4677777777776543 3445566677777777777664
Q ss_pred h-hhHHHHHHHHHHHhhhcCCCCCHh-----hhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCc-ccccccCCchHHH
Q 003214 651 G-QEVFEEVLEIVSYMTFFSPTISLE-----MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGT-AHFLTCKEPDYQQ 723 (838)
Q Consensus 651 ~-~~~~~~~l~ll~~~~~~~~~~~~~-----l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~-~~~l~~~~~~~~~ 723 (838)
+ ..|-.+.++-++.++++...-.|. --.+||.+..+++++-.++.|-++.+|...+...+ +.+-+ .|.+
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~----~y~~ 159 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPD----AYKQ 159 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--T----TTGG
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcH----HHHH
Confidence 4 688999999999999876444443 34789999999988888999999988887777776 22221 2332
Q ss_pred HHHHHHHHHhcCCCCCCCcc-CchhHHHHHHHHHcccCc--ccchHHHHHHHHHHHh
Q 003214 724 SLWSMVSSIMADKNLEDGDI-EPAPKLIEVVFQNCKGQV--DHWVEPYLRITVERLR 777 (838)
Q Consensus 724 ~l~~~~~~~l~~~~~~~~~~-~~~~~ll~~i~~~~~~~~--~~~l~~il~~~l~~l~ 777 (838)
++.-++....-+..+. ....+++.+++.+.+..+ .+.+++++... ++|-
T Consensus 160 ----L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvF-QkLi 211 (435)
T PF03378_consen 160 ----LFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVF-QKLI 211 (435)
T ss_dssp ----GHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHH-HHHH
T ss_pred ----HHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHH-HHHH
Confidence 2233333211122222 345679999999988764 36788887765 4443
No 54
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.72 E-value=0.091 Score=55.08 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=110.9
Q ss_pred HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 003214 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (838)
Q Consensus 456 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~ 535 (838)
.++.++.+.|.|.++++++-+|.+|..++|-++-. +.+...+.+..+...++..+..|+..|..++-.++-... .+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll---d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL---DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG-ID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ch
Confidence 56688888899999999999999999999999864 334566677777777755577899999999998887653 22
Q ss_pred ccc--------cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 003214 536 EIR--------PILPQLLDEFFKLMNEVENEDLVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 606 (838)
Q Consensus 536 ~l~--------p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (838)
.+. .....+++.+.+.+...+.+-...+.+.+..-+ ...+.+ -+.++..|+- .|=+....+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll----~yF~p~t~~----- 168 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLL----LYFNPSTED----- 168 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH----HHcCcccCC-----
Confidence 222 234567777777777654343444555555532 333333 3455555553 343333221
Q ss_pred hHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHhcc
Q 003214 607 GALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTT 649 (838)
Q Consensus 607 ~~~~~~~~l~~i~~i~~~~~-~~~~~~~~l~~~~~p~i~~~l~~ 649 (838)
+. .+-++++-.+.... .++.....++..++|.+..+...
T Consensus 169 ~~----~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 169 NQ----RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred cH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 11 23445555555443 23334455677778887777653
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.49 Score=53.42 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc-hh-hHHHHHHHHHHhhccc
Q 003214 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE-NE-DLVFTLETIVDKFGEE 574 (838)
Q Consensus 497 ~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~-~~-~l~~~l~~iv~~~~~~ 574 (838)
.+.-+++..-.+|++.++.|-.++|.++-.+.... -...|.+.|+.++.+-. .. .++..+..+...-..-
T Consensus 284 D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~l 355 (968)
T KOG1060|consen 284 DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTL 355 (968)
T ss_pred cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhh
Confidence 46777888888888888889888888877765432 23455666777776421 11 2444444444443344
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhH
Q 003214 575 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 654 (838)
Q Consensus 575 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~ 654 (838)
+.||... .|.+ ..|+ ......-++.+++++..-+. ..+++-+...+.....+|
T Consensus 356 F~P~lKs-------Ffv~-----ssDp------~~vk~lKleiLs~La~esni---------~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 356 FEPHLKS-------FFVR-----SSDP------TQVKILKLEILSNLANESNI---------SEILRELQTYIKSSDRSF 408 (968)
T ss_pred hhhhhhc-------eEee-----cCCH------HHHHHHHHHHHHHHhhhccH---------HHHHHHHHHHHhcCchhH
Confidence 4454322 1111 1233 23333446777777765321 345555666665544478
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhc
Q 003214 655 FEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMA 734 (838)
Q Consensus 655 ~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~ 734 (838)
...+.+-+..+......+++.+..- ++.++.+.+..++.+.+..++..+..+|.+.. .++..+. ++++
T Consensus 409 aa~aV~AiGrCA~~~~sv~~tCL~g---Lv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La----~lld 476 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGSVTDTCLNG---LVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLA----RLLD 476 (968)
T ss_pred HHHHHHHHHHHHHhhCchhhHHHHH---HHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHH----HHhh
Confidence 8888888888877777777765432 34444455556777777778777777765533 2333333 3332
Q ss_pred CCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhhccChHHH
Q 003214 735 DKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR---AEKSYLKCLLVQVIADALYYNSSLT 803 (838)
Q Consensus 735 ~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~---~~~~~~~~~~l~v~~~~~~~~~~~~ 803 (838)
.-. -..++....++++..... ++.|...+++++.. .+.+.++..++...+.+..+|.+++
T Consensus 477 ti~-vp~ARA~IiWLige~~e~--------vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~ 539 (968)
T KOG1060|consen 477 TIL-VPAARAGIIWLIGEYCEI--------VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQT 539 (968)
T ss_pred hhh-hhhhhceeeeeehhhhhh--------cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhhH
Confidence 111 112234566776666655 33455555555543 3677889999999999999998774
No 56
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.71 E-value=0.023 Score=54.46 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=101.1
Q ss_pred hhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 003214 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 509 (838)
+..|-.++.++|-++..-. .-+++++ ..+...|.+++|.+|..|+.++++...-.+- ..-..++..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~------~~ve~~~-~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP------NLVEPYL-PNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc------HHHHhHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eehhhhhHHHHHHH
Confidence 3456667777776665422 2345554 3466778899999999999999998542211 12244557777888
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh-----hchhhHHHHHHHHHHhhcccchhhHHHHHH
Q 003214 510 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-----VENEDLVFTLETIVDKFGEEMAPYALGLCQ 584 (838)
Q Consensus 510 ~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~-----~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (838)
.|+++.||..|...+..+..... ++.+...+++++..+-...+. .+.+.....+..+...+.+ ......++.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~-~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~ 149 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRN-PNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVE 149 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence 99999999999999999988853 677888888888766655432 2333455666666666663 133456666
Q ss_pred HHHHHHHH
Q 003214 585 NLAAAFWR 592 (838)
Q Consensus 585 ~L~~~~~~ 592 (838)
.|++.+..
T Consensus 150 kl~~~~~~ 157 (178)
T PF12717_consen 150 KLCQRFLN 157 (178)
T ss_pred HHHHHHHH
Confidence 77664443
No 57
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=1.7 Score=49.69 Aligned_cols=241 Identities=12% Similarity=0.165 Sum_probs=142.5
Q ss_pred cccCCCcchhhHHHHHHHhhhcc-------ccCChh---HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHI-------NFSDQN---NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 537 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~-------~~~~~~---~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l 537 (838)
.|..+.+.|..=|+.++-+.-.+ .|..++ ....++..++..+.-+...=-.+-.+|+-+.+... ++.+
T Consensus 506 ~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~--~~~i 583 (960)
T KOG1992|consen 506 FLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL--QSAI 583 (960)
T ss_pred hccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC--HHhh
Confidence 45566777777777777665322 222221 23555666666665444444567888999988885 6888
Q ss_pred ccchHHHHHHHHHHhhhhc-h-------hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 003214 538 RPILPQLLDEFFKLMNEVE-N-------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (838)
Q Consensus 538 ~p~l~~il~~L~~ll~~~~-~-------~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (838)
.|+.+.++..|.+++.++. + ..++++++.++...++.=..-...+...|...|..+..+. -.-
T Consensus 584 ~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD---------I~E 654 (960)
T KOG1992|consen 584 IPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED---------IQE 654 (960)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 8999999999999887542 1 1266777777776554321123445556666555555432 223
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh---hhHHHHHHHHHHHhhhcCCC-CC--HhhhHhHHHH
Q 003214 610 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG---QEVFEEVLEIVSYMTFFSPT-IS--LEMWSLWPLM 683 (838)
Q Consensus 610 ~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~---~~~~~~~l~ll~~~~~~~~~-~~--~~l~~l~~~l 683 (838)
+.-+.+..++-++...+. .+-+...|++..++++.. ..-+.....++..+++.... +. ..+..+++.+
T Consensus 655 fiPYvfQlla~lve~~~~------~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGif 728 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSG------TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIF 728 (960)
T ss_pred HHHHHHHHHHHHHHhcCC------CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHH
Confidence 456788888888887643 122567777777777643 46677888888888876532 22 1133344444
Q ss_pred HHHHh-----hhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCC
Q 003214 684 MEALA-----DWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADK 736 (838)
Q Consensus 684 ~~~~~-----~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~ 736 (838)
-+++. ..|++.+..+++.+. +..+. +|+..++..+-+-+++.
T Consensus 729 qkLiaSka~Dh~GF~LLn~i~~~~~------~~~~~-----py~k~i~~llf~Rlqns 775 (960)
T KOG1992|consen 729 QKLIASKANDHHGFYLLNTIIESIP------PNELA-----PYMKQIFGLLFQRLQNS 775 (960)
T ss_pred HHHhcCcccchhHHHHHHHHHhcCC------Hhhhh-----HHHHHHHHHHHHHHhcc
Confidence 44443 245555665554443 22222 56666665544444433
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.68 E-value=0.26 Score=53.77 Aligned_cols=192 Identities=16% Similarity=0.205 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcc
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v 465 (838)
+|...+......++++|-+ .++.|+...-.+ -++|..|.+++.++..|+.-+.-. ....+.+++ ..+
T Consensus 297 VRnvt~ra~~vva~algv~---~llpfl~a~c~S-------rkSw~aRhTgiri~qqI~~llG~s--~l~hl~~l~-~ci 363 (975)
T COG5181 297 VRNVTGRAVGVVADALGVE---ELLPFLEALCGS-------RKSWEARHTGIRIAQQICELLGRS--RLSHLGPLL-KCI 363 (975)
T ss_pred HHHHHHHHHHHHHHhhCcH---HHHHHHHHHhcC-------ccchhhhchhhHHHHHHHHHhCcc--HHhhhhhHH-HHH
Confidence 3444455566677777643 344444444332 258999999999999999876432 112333332 234
Q ss_pred cccccCCCcchhhHHHHHHHhhhcccc-CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 003214 466 FPEFSSPVGHLRAKAAWVAGQYAHINF-SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (838)
Q Consensus 466 ~p~l~~~~~~lr~ra~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~i 544 (838)
...+.+.+.++|--+...+|..++... .--+.+..++..+-+..+..--.+-.+=..|...++.-. ++++.--+-.+.
T Consensus 364 ~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm-~peYa~h~tre~ 442 (975)
T COG5181 364 SKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM-SPEYACHDTREH 442 (975)
T ss_pred HHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC-ChHhhhhhHHHH
Confidence 345677889999999888888876421 111455566655555543211111112223333333332 367777788899
Q ss_pred HHHHHHHhhhhchhh--HHHHHHHHHHhhcccchh--hHHHHHHHHHHHHHH
Q 003214 545 LDEFFKLMNEVENED--LVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWR 592 (838)
Q Consensus 545 l~~L~~ll~~~~~~~--l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~ 592 (838)
++.++..++..+.+- ...+...+....+ .++| +-.++...+.+.||+
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~-~~tp~~lr~~v~pefF~~fw~ 493 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVG-TDTPWKLRDQVSPEFFSPFWR 493 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccC-CCCHHHHHHhhcHHhhchHHH
Confidence 999999988766543 2233333333332 3455 356666677777665
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.54 E-value=0.82 Score=50.48 Aligned_cols=281 Identities=18% Similarity=0.252 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhccc-cCCCCCC-cc---hhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 389 ASMDFVSELVRKRGKENLQKFIQFIVGIFKRY-DETPVEY-KP---YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 389 ~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~-~~~~~~~-~~---~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
.+++++..++.+.+.+--+.+++-+...+... ...|... .+ +..........+.+ .++.+.-.+. +...++..
T Consensus 116 ~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il-~~l~~~~~~~-~~~~ll~~ 193 (415)
T PF12460_consen 116 LLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAIL-CSLRKDVSLP-DLEELLQS 193 (415)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHH-HcCCcccCcc-CHHHHHHH
Confidence 45667777777766443334444333443310 0111110 11 23333333333333 3444322221 33444444
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (838)
.+--.....++..|..++.+++-... ++.+.+.+..++......+ ...+...+..+...+-.+....-.+. .|...
T Consensus 194 l~~~~~~~~~~~~~~~~~~~la~LvN-K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~--~~~~~ 270 (415)
T PF12460_consen 194 LLNLALSSEDEFSRLAALQLLASLVN-KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG--HPLAT 270 (415)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC--CchHH
Confidence 22212344568999999999988765 3445556788888888777 33334445455444433333221111 26777
Q ss_pred HHHHHHHHHhhhhchh-hHHHHHHHHHHh--------hcccchh-hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHH
Q 003214 543 QLLDEFFKLMNEVENE-DLVFTLETIVDK--------FGEEMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 612 (838)
Q Consensus 543 ~il~~L~~ll~~~~~~-~l~~~l~~iv~~--------~~~~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 612 (838)
.+++.|++++...+.. .....++.++.- ....+.+ |-..+...+++.+.+-.++..+ + .+.
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~------~---~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD------E---IKS 341 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh------h---hHH
Confidence 8888888888764332 345555555432 1234555 3444555555544444433221 1 345
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCC-CCHhhhHhHHHHHH
Q 003214 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT-ISLEMWSLWPLMME 685 (838)
Q Consensus 613 ~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~-~~~~l~~l~~~l~~ 685 (838)
.++.+++.++..+. ++++.+-.+.++|++-..++.++.+....+++.+..++...++ +++.+..+.|++++
T Consensus 342 ~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 342 NYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 67889999999874 4555555688999999999888888999999999998876532 34455566665554
No 60
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.43 E-value=0.047 Score=51.36 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=98.4
Q ss_pred HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHh
Q 003214 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEA 530 (838)
Q Consensus 456 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~-~~V~~~A~~al~~~~~~ 530 (838)
.+..+. ..+...++++++.-|..++-+++...+.. +. +....-+..+++.|++++ +.++..|+.++..++..
T Consensus 22 ~l~~l~-~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~--~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLV-TRINSLLQSKSAYSRWAGLCLLKVTVEQC--SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHH-HHHHHHhCCCChhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 344443 33666778888888888888887765431 12 345777788888887654 45888999999999876
Q ss_pred cc-----cccccccchHHHHHHHHHHhhh-hchhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 531 CR-----DLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 531 ~~-----~~~~l~p~l~~il~~L~~ll~~-~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
-. .++...|.++.+++.++++++. ...+..+.++..++..+...+.||..++-..+..
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 54 4677899999999999999984 3345688999999999999999999888776654
No 61
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=3.2 Score=49.03 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh---h-----hHHHHHHHHHHHHHH
Q 003214 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD---Q-----QVYGALFVLRILSRK 153 (838)
Q Consensus 84 e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s---~-----~~~~~L~~L~~i~~~ 153 (838)
+--+.+-+.|++++.+.+..||...|-.+++|+.+. | ++|.++++...-+ + .+||++..|.++..+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 345678888899999999999999999999999886 4 4555555544322 2 689999999998863
No 62
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.26 Score=55.70 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=94.5
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++|..|--|+..+|++... + +...+..-+...+++.+|++|..|..++..+..... +...-..++..+-.
T Consensus 98 ~np~iR~lAlrtm~~l~v~--~-------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVD--K-------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLVEDSGLVDALKD 167 (734)
T ss_pred CCHHHHHHHhhceeeEeeh--H-------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhccccchhHHHHH
Confidence 5899888888888765432 1 111122223345678899999999999988865321 11222445555556
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 587 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (838)
.+.|+++.|-..|..|+..+.+... .....-...+++..++..+++.+.=.-..+++.+.....+.-.+ +.+++..+.
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~-~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e-a~~i~~r~~ 245 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHP-SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE-AEDICERLT 245 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCC-CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh-HHHHHHHhh
Confidence 6668888888899999999888753 23444466788888888888765445566666666655443222 444554444
Q ss_pred H
Q 003214 588 A 588 (838)
Q Consensus 588 ~ 588 (838)
+
T Consensus 246 p 246 (734)
T KOG1061|consen 246 P 246 (734)
T ss_pred h
Confidence 3
No 63
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=2.8 Score=48.41 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCC-----CCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc
Q 003214 499 RKALHSVVSGLRD-----PELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG 572 (838)
Q Consensus 499 ~~~~~~l~~~l~~-----~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~ 572 (838)
...++.++...-. .++..--++...+..+++-.. .+-.+-|+++-++++|- +.-.+......+.++.+.+.
T Consensus 503 ~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh---~sk~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 503 STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH---NSKESEQAISTLKTLCETCP 579 (982)
T ss_pred hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc---CchHHHHHHHHHHHHHHhhh
Confidence 4445555554421 233344456666666665543 56778888888877664 22223445666999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 003214 573 EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (838)
Q Consensus 573 ~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~ 626 (838)
+++.||+..++..+-..+.+ ... +.-.+..++.+|+-+++...
T Consensus 580 ~~L~py~d~~~a~~~e~l~~----~~~-------~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 580 ESLDPYADQFSAVCYEVLNK----SNA-------KDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred hhCchHHHHHHHHHHHHhcc----ccc-------CchHHHHHHHHHHHHHHhcc
Confidence 99999999998776653322 111 12235578888898888875
No 64
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.15 E-value=3.7 Score=47.59 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=90.3
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 538 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~ 538 (838)
-+..+.+..+++++++.+|+-|+.++|... .++....++..+.++++|++.-||-.|+.|+..+.+-.+ +.+.
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~ 163 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYH 163 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhh
Confidence 344566777899999999999999997643 457889999999999999999999999999999987642 3222
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 539 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 539 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
.- ..+..+-.++.+.+..-+..++-++..-..+...+|....+..+.+
T Consensus 164 ~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 164 EL--GLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQ 211 (757)
T ss_pred cc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhh
Confidence 21 1334444555565555677888888777766677888887766654
No 65
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.15 Score=51.53 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=78.2
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcch---HHHHHHHhhcccccccCC--CcchhhHHHHHHHhhhcccc--CChhHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYK---SELERMLVQHVFPEFSSP--VGHLRAKAAWVAGQYAHINF--SDQNNFRKA 501 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~---~~~~~~l~~~v~p~l~~~--~~~lr~ra~~~l~~~~~~~~--~~~~~~~~~ 501 (838)
+-..+|-+.+|+|.+|..-....++. .-++++| ..+.++ |.-+-+.+-|+++..+.-.= .+-+...+.
T Consensus 170 ~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL-----~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa 244 (526)
T COG5064 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL-----GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA 244 (526)
T ss_pred hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH-----HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH
Confidence 55789999999999987533222221 1233332 222333 45677889999999976431 122568899
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH-HHHHHHHHHhhh
Q 003214 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP-QLLDEFFKLMNE 554 (838)
Q Consensus 502 ~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~-~il~~L~~ll~~ 554 (838)
++.+.+++...|+-|-+.||+|+..+.+... +.+...+. .+..+|+.++..
T Consensus 245 lpiL~KLiys~D~evlvDA~WAiSYlsDg~~--E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDACWAISYLSDGPN--EKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhccCcH--HHHHHHHhcCCcHHHHHHhcC
Confidence 9999999988788889999999999988753 33333332 244556666654
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.99 E-value=0.0074 Score=53.44 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=65.4
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHH-HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH-H-HHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELE-RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-F-RKALHSV 505 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~-~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~-~-~~~~~~l 505 (838)
+|..++.++.+++.++..-.+.. ..-+. ..+ +.+.+.+.++++.++..|+|++++++......... . ..+++.+
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~i-~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l 96 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNI--QAVVEAGGL-PALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCCh-HHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHH
Confidence 68999999999999986521110 00011 111 22333456678999999999999997632111121 2 2368888
Q ss_pred HhcCCCCCCchHHHHHHHHHHHH
Q 003214 506 VSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 506 ~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
++.+++.+..++..|+.+|.+++
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh
Confidence 89998888889999999999876
No 67
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=5.7 Score=47.63 Aligned_cols=307 Identities=14% Similarity=0.155 Sum_probs=178.3
Q ss_pred CCHHHHHHHHHHHHHhhc---ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHH
Q 003214 384 YSPRTASMDFVSELVRKR---GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 460 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~---~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~ 460 (838)
+..+.....+.......+ +.++...+.+.+.+.... ..+...-....+.+-.+..++...... ++..+
T Consensus 585 ~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~----~~~s~~~~~~~slLdl~~~~a~~~~e~-----~vs~l 655 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASD----LDESVASFKTLSLLDLLIALAPVQTES-----QVSKL 655 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhcc----chhhhhhHHHHHHHHHHHhhhccccch-----hHHHH
Confidence 444444444444443433 334444444433333222 111123455666666666666554332 34444
Q ss_pred HhhcccccccC-CCcchhhHHHHHHHhhhcccc---CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccc
Q 003214 461 LVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536 (838)
Q Consensus 461 l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~ 536 (838)
+ .+.|.+.+ ..+-++.++..++........ -..+....+++.+...+++.+.+.+..++.+++.+++... ..
T Consensus 656 ~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--~e 731 (1176)
T KOG1248|consen 656 F--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--AE 731 (1176)
T ss_pred H--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--HH
Confidence 4 36666654 478899999999988865410 0124578888888888888888999999999999999864 44
Q ss_pred cccchHHHHHHHHHHhhhhchhh---HHHHHHHHH--H-hhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHH
Q 003214 537 IRPILPQLLDEFFKLMNEVENED---LVFTLETIV--D-KFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALA 610 (838)
Q Consensus 537 l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv--~-~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~ 610 (838)
...+++..+...+-.+++.+... ...+|-.+. . ...+.=.| +.+.++..+ .++..+..+ +....
T Consensus 732 ~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl----~~Isagl~g-----d~~~~ 801 (1176)
T KOG1248|consen 732 HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFL----SIISAGLVG-----DSTRV 801 (1176)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHH----HHHHhhhcc-----cHHHH
Confidence 44555665555555556554432 233333332 2 22111123 223333222 233222111 12333
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCC--CCHhhhHhHHHHHHHHh
Q 003214 611 AVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT--ISLEMWSLWPLMMEALA 688 (838)
Q Consensus 611 ~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~--~~~~l~~l~~~l~~~~~ 688 (838)
..+-+-+++.++.--+..-+ ....+.++..+.-.+.....+...-++.++..+++..+. +++.+.+++|.++...+
T Consensus 802 ~as~Ivai~~il~e~~~~ld--~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILD--DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH
Confidence 33336667777665432211 123466777777788888889999999999999876643 46667789999988876
Q ss_pred hhHhhhhhhhhhhhhhhhccCcccccc
Q 003214 689 DWAIDFFPNILVPLDNYISRGTAHFLT 715 (838)
Q Consensus 689 ~~~~~~l~~~~~~L~~~i~~~~~~~l~ 715 (838)
+....+.-.+-.+|+-++++.+-..++
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 655556666777777777766554454
No 68
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.99 Score=54.96 Aligned_cols=198 Identities=15% Similarity=0.192 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003214 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~ 462 (838)
.|+.|..|+-=+..+++.-|.+ +++.+..+...+-+|.-+| +.+.++|--.+=+.+...-+.. ....+..++.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~k-l~p~l~kLIPrLyRY~yDP----~~~Vq~aM~sIW~~Li~D~k~~--vd~y~neIl~ 1042 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEK-LEPYLKKLIPRLYRYQYDP----DKKVQDAMTSIWNALITDSKKV--VDEYLNEILD 1042 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHh-hhhHHHHhhHHHhhhccCC----cHHHHHHHHHHHHHhccChHHH--HHHHHHHHHH
Confidence 4555555555556665554432 3444444444454554444 4566665554444433211110 1112333343
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhcc-ccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-ccccccc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHI-NFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRP 539 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~-~~~~~-~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p 539 (838)
. +++.+.+..-++|-.+|..+...-.- .+... +.++++...++..+.|-...||.+|-.+.+.+..-+- .-+.-.+
T Consensus 1043 e-LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1043 E-LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNG 1121 (1702)
T ss_pred H-HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 2 45556677789999999999987432 22111 5688999999999988656688776555444332221 0000100
Q ss_pred -chHHHHHHHHHHh------hhhch-h-hHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 540 -ILPQLLDEFFKLM------NEVEN-E-DLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 540 -~l~~il~~L~~ll------~~~~~-~-~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
--.+++..++..+ .+++. . .-..++..++...+..+.||.++++.-|..
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN 1179 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH
Confidence 1223333333322 22221 1 245677788888999999999999987765
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.61 E-value=0.27 Score=49.37 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=95.4
Q ss_pred cCCHHHHHHHHHHHHHhhc-ccchHHHHHHHHH---HHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHH
Q 003214 383 LYSPRTASMDFVSELVRKR-GKENLQKFIQFIV---GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 458 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~-~~~~~~~il~~~~---~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~ 458 (838)
.|+.|..|..-+..++... +....+.+.+.+. ..+.....+ ..-...-.++.+++.++..+... +...++
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~--~~~~~~ 93 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSH--FEPYAD 93 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGG--GHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHh--HHHHHH
Confidence 4778999999999988876 2233333444333 122211111 12345556667888888887664 333333
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHH-HHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNE 536 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~ 536 (838)
.++ +.++..+.++..++|.+|.-++..+.... + ....+ ...+...+++.++.||..++..+..++..+. ....
T Consensus 94 ~~l-~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 ILL-PPLLKKLGDSKKFIREAANNALDAIIESC--S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHH-HHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHH-HHHHHHHccccHHHHHHHHHHHHHHHHHC--C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 333 33444556778899999999998887643 1 22444 6777778889999999999999999999875 3455
Q ss_pred ccc--chHHHHHHHHHHhhhhchh
Q 003214 537 IRP--ILPQLLDEFFKLMNEVENE 558 (838)
Q Consensus 537 l~p--~l~~il~~L~~ll~~~~~~ 558 (838)
+.+ .++.++..+..++++.+.+
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHH
Confidence 544 3477888888888876544
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=6.2 Score=45.23 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHh--hcCCC-hH-HHHHHHHHhcCc-ChhhHHHHH-----------HHHHHhhhhcCCCCCCC----
Q 003214 17 NPEERKAAEHSLNQF--QYTPQ-HL-VRLLQIIVDNNC-DLSVRQVAS-----------IHFKNFIAKNWAPHEPN---- 76 (838)
Q Consensus 17 d~~~r~~Ae~~L~~~--~~~p~-f~-~~Ll~i~~~~~~-~~~iR~~Aa-----------i~lKn~i~~~W~~~~~~---- 76 (838)
|+..|+.-=+.|--+ -..|. |. ..++.++.++.. +--+-.+|+ +++-|.+++.-+.+...
T Consensus 47 d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVgl 126 (866)
T KOG1062|consen 47 DPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGL 126 (866)
T ss_pred CHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHH
Confidence 556666666666633 34553 43 245566665442 233344444 44678888877765421
Q ss_pred ----CCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--h-HHHHHHHHHH
Q 003214 77 ----EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q-VYGALFVLRI 149 (838)
Q Consensus 77 ----~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~-~~~~L~~L~~ 149 (838)
.....++|--.-+--.+-+.+...++.||++.+.|..++.+.. |+.-..+++.--+++.+. . ..+++..+.+
T Consensus 127 AL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e 205 (866)
T KOG1062|consen 127 ALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITE 205 (866)
T ss_pred HHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHH
Confidence 1223444432222222334567789999999999999999875 544444555555555544 2 3667778888
Q ss_pred HHHHcccCCccCcchHHHHHHHHhHHHHHHHH
Q 003214 150 LSRKYEFKSDEERTPVYRIVEETFHHLLNIFN 181 (838)
Q Consensus 150 i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 181 (838)
+|+.- ++.-..++.+++.++..|-++..
T Consensus 206 ~c~~~----~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 206 LCKIS----PDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred HHhcC----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88752 33344556655555555444443
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.47 E-value=0.22 Score=58.75 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 385 SPRTASMDFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~-~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
..|.+|.+++..++..... ..++.++.|+...++. .....+-+|+..+..+-.-.++.++.. ..++..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D--------s~a~Vra~Al~Tlt~~L~~Vr~~~~~d---aniF~e 506 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD--------SEADVRATALETLTELLALVRDIPPSD---ANIFPE 506 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC--------chHHHHHHHHHHHHHHHhhccCCCccc---chhhHh
Confidence 3567889999999888754 4467888888888764 245677777777665555444433222 355677
Q ss_pred ccccccc----C-CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHH-hc-CCCCCCchHHHHHHHHHHHHHhcccccc
Q 003214 464 HVFPEFS----S-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV-SG-LRDPELPVRVDSVFALRSFVEACRDLNE 536 (838)
Q Consensus 464 ~v~p~l~----~-~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~-~~-l~~~~~~V~~~A~~al~~~~~~~~~~~~ 536 (838)
+++|.|+ + ...++|..-+-+++++++.-. .+...-+.+- .. +++++.- ++ ....
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse---t~------------~~~~ 567 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE---TA------------PEQN 567 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc---cc------------cccc
Confidence 8888775 3 456888888888988876321 1111111111 11 2332211 00 0111
Q ss_pred cccchHHHHHHH----HHHhhhhch---hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 003214 537 IRPILPQLLDEF----FKLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (838)
Q Consensus 537 l~p~l~~il~~L----~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (838)
...++..+.+.. ..++.+.+. ..++..|.-+...|+.+=.. .-|.++|+. |++ |. | ..
T Consensus 568 ~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN--D~iLshLiT-fLN-------Dk----D-w~ 632 (1431)
T KOG1240|consen 568 YNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN--DVILSHLIT-FLN-------DK----D-WR 632 (1431)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc--cchHHHHHH-Hhc-------Cc----c-HH
Confidence 111111211111 122222111 12444444444455532111 124556653 333 21 1 56
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC---C--------CC-----C
Q 003214 610 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS---P--------TI-----S 673 (838)
Q Consensus 610 ~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~---~--------~~-----~ 673 (838)
+++..++.|.-+.-.+|.. ..++.++|++...++...+-.+..++.-++.+++.. + .+ -
T Consensus 633 LR~aFfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~h 707 (1431)
T KOG1240|consen 633 LRGAFFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCH 707 (1431)
T ss_pred HHHHHHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeC
Confidence 7888999888776666643 256899999999997666677899999999888753 1 12 2
Q ss_pred Hhhh---HhHHHHHHHHhh-hHhhhhhhhhhhhhhhhccCcccc
Q 003214 674 LEMW---SLWPLMMEALAD-WAIDFFPNILVPLDNYISRGTAHF 713 (838)
Q Consensus 674 ~~l~---~l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~~~ 713 (838)
|..| ....-|.....+ ...|.-.-++++++.|+..+..++
T Consensus 708 PN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i 751 (1431)
T KOG1240|consen 708 PNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQI 751 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhh
Confidence 3344 223333333222 235555667888888888765443
No 72
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=6.5 Score=45.01 Aligned_cols=228 Identities=18% Similarity=0.215 Sum_probs=126.7
Q ss_pred hcccccccCC-CcchhhHHHHHHHhhh-ccccCCh---hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccc
Q 003214 463 QHVFPEFSSP-VGHLRAKAAWVAGQYA-HINFSDQ---NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNE 536 (838)
Q Consensus 463 ~~v~p~l~~~-~~~lr~ra~~~l~~~~-~~~~~~~---~~~~~~~~~l~~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~ 536 (838)
......++++ +..+|-.+...+--.. ++.|... ..++.++..+++.+.. +..--|.+--..+..++... .+.
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~--~e~ 606 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERV--SEH 606 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHh
Confidence 3344566765 5667766666554443 3556433 3356666666666653 12225677778888888885 588
Q ss_pred cccchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHhhccc---chhhHHHHHHHHHHHHHHHHhcccCCCCCCChhH
Q 003214 537 IRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEE---MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 608 (838)
Q Consensus 537 l~p~l~~il~~L~~ll~~~~~~~-----l~~~l~~iv~~~~~~---i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 608 (838)
+.||...+++-+=.+=.+.+.+. ++.+|..+|...+.. .-|++-.+++.-+ |++..+.-.
T Consensus 607 I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~------------D~~sP~hv~ 674 (978)
T KOG1993|consen 607 IAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST------------DPSSPEHVY 674 (978)
T ss_pred hhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc------------CCCCCceee
Confidence 99999999887777766666554 667888899888754 3344433332111 221111111
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCC--CHhhhHhHHHHHHH
Q 003214 609 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI--SLEMWSLWPLMMEA 686 (838)
Q Consensus 609 ~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~--~~~l~~l~~~l~~~ 686 (838)
+...|+ +.=.+.+.....-++-+-.+.+.+.|.|+.. .+-+..+++|+.+.+--..+. +..-..+|..+.++
T Consensus 675 L~EDgm-eLW~~~L~n~~~l~p~ll~L~p~l~~~iE~s-----te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~ 748 (978)
T KOG1993|consen 675 LLEDGM-ELWLTTLMNSQKLTPELLLLFPHLLYIIEQS-----TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDL 748 (978)
T ss_pred hhhhHH-HHHHHHHhcccccCHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 111111 1112222222222233334555555555543 345667777777654322221 11223566666666
Q ss_pred HhhhHhhhhhhhhhhhhhhhccCc
Q 003214 687 LADWAIDFFPNILVPLDNYISRGT 710 (838)
Q Consensus 687 ~~~~~~~~l~~~~~~L~~~i~~~~ 710 (838)
+.+-..+-++.++++++..+...+
T Consensus 749 l~dvr~egl~avLkiveili~t~~ 772 (978)
T KOG1993|consen 749 LDDVRNEGLQAVLKIVEILIKTNP 772 (978)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhhH
Confidence 666666778888888887777665
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.37 E-value=0.0098 Score=44.21 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=38.3
Q ss_pred hhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhh
Q 003214 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 487 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 487 (838)
|..|++++.++|.++....+. ....+..++ ..+.+.|+++++-+|..|||.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~~~~~-~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYLPELL-PALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHHHHHH-HHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999877554331 112223332 3355667888889999999999873
No 74
>PRK09687 putative lyase; Provisional
Probab=95.26 E-value=0.53 Score=48.63 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=73.3
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++...+.++..+++.+.+. ..... +...+.++++.+|..|+|.+|++..-. .....+++.+..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~---------~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~----~~~~~a~~~L~~ 97 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ---------DVFRL----AIELCSSKNPIERDIGADILSQLGMAK----RCQDNVFNILNN 97 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc---------hHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCc----cchHHHHHHHHH
Confidence 4778899999998866431 11121 222456788999999999999976411 113566777776
Q ss_pred c-CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHH
Q 003214 508 G-LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 567 (838)
Q Consensus 508 ~-l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~i 567 (838)
. ++|++..||..|+.+|..+..... ...+.+++.+...+.+.+...-..++.++
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~------~~~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNP------LYSPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhccccccc------ccchHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 6 678899999999999998754321 12345555555555543333333344444
No 75
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.23 E-value=1.1 Score=47.14 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=82.7
Q ss_pred cchHHHHHHHHH----HhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHH
Q 003214 539 PILPQLLDEFFK----LMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (838)
Q Consensus 539 p~l~~il~~L~~----ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (838)
.+++++++.++. ....+...+++.++.+++.+.++.+.|+.+.+...+..+-...+.+.. ++.+-.+...
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~------~~yPe~r~~f 140 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF------EEYPEHRVNF 140 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS------SSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh------hhChHHHHHH
Confidence 344555554433 333344446999999999999999999999999999988777665322 2345566778
Q ss_pred HHHHHHHHHhhcCChHHHHH----HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q 003214 615 LRAISTILESVSRLPHLFVQ----IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 615 l~~i~~i~~~~~~~~~~~~~----l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~ 669 (838)
+..+..+++.+- +.+.+ ....++..+...+.+...+..+.++.++..++.+.
T Consensus 141 f~LL~~i~~~~f---~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 141 FKLLRAINEHCF---PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHHT---HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH---HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 888888877642 11111 12445566666677778899999999999888654
No 76
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.10 E-value=0.019 Score=36.67 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 501 ~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
+++.++++++|++..||.+|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468888999999999999999999998875
No 77
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=3.7 Score=46.59 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=78.8
Q ss_pred CHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHh
Q 003214 368 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL 447 (838)
Q Consensus 368 Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l 447 (838)
-|+||+|. .+.| -+|+-...+.+++++..+.+.+.- + ..+..|.|.+ |++.|....
T Consensus 110 HPNEyiRG--------~TLR--------FLckLkE~ELlepl~p~IracleH----r---hsYVRrNAil-aifsIyk~~ 165 (948)
T KOG1058|consen 110 HPNEYIRG--------STLR--------FLCKLKEPELLEPLMPSIRACLEH----R---HSYVRRNAIL-AIFSIYKNF 165 (948)
T ss_pred CchHhhcc--------hhhh--------hhhhcCcHHHhhhhHHHHHHHHhC----c---chhhhhhhhe-eehhHHhhh
Confidence 68999872 3333 466666678889999988888863 2 2455555554 666665432
Q ss_pred hc-CCcchHHHHHHHhhcccccccCCCcch------------hhHHHHHHHh-hhcc------------------ccCCh
Q 003214 448 KQ-TEPYKSELERMLVQHVFPEFSSPVGHL------------RAKAAWVAGQ-YAHI------------------NFSDQ 495 (838)
Q Consensus 448 ~~-~~~~~~~~~~~l~~~v~p~l~~~~~~l------------r~ra~~~l~~-~~~~------------------~~~~~ 495 (838)
.. .++-.+-++.+|... +.|-= +.||...++. +..+ ...+|
T Consensus 166 ~~L~pDapeLi~~fL~~e-------~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 166 EHLIPDAPELIESFLLTE-------QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred hhhcCChHHHHHHHHHhc-------cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 11 112222333443321 22211 2333332222 1111 01233
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il 545 (838)
+.-...++.+.+.|++++..|+..|+.+|.++..+ +..+++-...++
T Consensus 239 ~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i 285 (948)
T KOG1058|consen 239 AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYI 285 (948)
T ss_pred HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHH
Confidence 44456667777788888888999998888887666 344444444333
No 78
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.05 E-value=9.5 Score=44.75 Aligned_cols=134 Identities=21% Similarity=0.186 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003214 383 LYSPRTASMDFVSELVRKRGKEN-LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~-~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l 461 (838)
.++.|.+|...+..++..+|.+- ...+. .+.+.... .++|..|-+.++++..+++.+.+.. +..++-+++
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i---~k~L~~~~-----q~~y~~R~t~l~si~~la~v~g~ei-~~~~Llp~~ 601 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWARLEEI---PKLLAMDL-----QDNYLVRMTTLFSIHELAEVLGQEI-TCEDLLPVF 601 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchhHHHhh---HHHHHHhc-----CcccchhhHHHHHHHHHHHHhccHH-HHHHHhHHH
Confidence 36789999999999999998421 12222 22222211 1279999999999999998876531 222333333
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
.. ...++.|-+|..++..+-.+.... ..+..-..+++.....-.|++.-||+.|..|+..+-..
T Consensus 602 ~~----l~~D~vanVR~nvak~L~~i~~~L-~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 602 LD----LVKDPVANVRINVAKHLPKILKLL-DESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HH----hccCCchhhhhhHHHHHHHHHhhc-chHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 22 345788999999999999987754 12233355666666666788888999999888876543
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.98 E-value=0.42 Score=47.92 Aligned_cols=175 Identities=21% Similarity=0.216 Sum_probs=99.6
Q ss_pred CCCCchHHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhcccchhhHHHHHH
Q 003214 511 DPELPVRVDSVFALRSFVEACR---DLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPYALGLCQ 584 (838)
Q Consensus 511 ~~~~~V~~~A~~al~~~~~~~~---~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (838)
+.+=-.|..|...|..++.... ..+.+.+.+..++..+...+++..+. ....++..++..++..+.||+..+++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3344468888889999887751 33444455555555666665544332 25677888888999999999888888
Q ss_pred HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHH
Q 003214 585 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSY 664 (838)
Q Consensus 585 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~ 664 (838)
.|.. .... .+...+...-+++..++..++-.+ ..+.+.+.......+...-..++..+..
T Consensus 98 ~Ll~----~~~~---------~~~~i~~~a~~~L~~i~~~~~~~~-------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 98 PLLK----KLGD---------SKKFIREAANNALDAIIESCSYSP-------KILLEILSQGLKSKNPQVREECAEWLAI 157 (228)
T ss_dssp HHHH----GGG------------HHHHHHHHHHHHHHHTTS-H---------HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHH----HHcc---------ccHHHHHHHHHHHHHHHHHCCcHH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7775 2221 123456677888888888764111 2337778888877888888889998888
Q ss_pred hhhcCCCCCHh------hhHhHHHHHHHHhhhHhhhhhhhhhhhhhh
Q 003214 665 MTFFSPTISLE------MWSLWPLMMEALADWAIDFFPNILVPLDNY 705 (838)
Q Consensus 665 ~~~~~~~~~~~------l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~ 705 (838)
++...+.-++. +..+.+.+.+++.+-+.+.....-.++..|
T Consensus 158 ~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 158 ILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 88655411111 234555555555444444544444444444
No 80
>PRK09687 putative lyase; Provisional
Probab=94.91 E-value=0.21 Score=51.49 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
..|..|...|..+...... ....+..+...+.+ .+++..+.++..++|.++..-.. .. ...+ ..
T Consensus 69 ~vR~~A~~aLg~lg~~~~~--~~~a~~~L~~l~~~-------D~d~~VR~~A~~aLG~~~~~~~~---~~---~~a~-~~ 132 (280)
T PRK09687 69 IERDIGADILSQLGMAKRC--QDNVFNILNNLALE-------DKSACVRASAINATGHRCKKNPL---YS---PKIV-EQ 132 (280)
T ss_pred HHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcccccccc---cc---hHHH-HH
Confidence 4688888777776432210 11233333333221 24789999999999987532111 11 1111 11
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~i 544 (838)
+.+.+.++++.+|..|.+.+|++. + ...++.++..++|++.-||..|+.||..+-. .-+.+
T Consensus 133 l~~~~~D~~~~VR~~a~~aLg~~~-----~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~----------~~~~~ 193 (280)
T PRK09687 133 SQITAFDKSTNVRFAVAFALSVIN-----D----EAAIPLLINLLKDPNGDVRNWAAFALNSNKY----------DNPDI 193 (280)
T ss_pred HHHHhhCCCHHHHHHHHHHHhccC-----C----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC----------CCHHH
Confidence 233456778899999999998754 2 3467888888999888899999999998711 12245
Q ss_pred HHHHHHHhhhhchhhHHHHHHHHHH
Q 003214 545 LDEFFKLMNEVENEDLVFTLETIVD 569 (838)
Q Consensus 545 l~~L~~ll~~~~~~~l~~~l~~iv~ 569 (838)
++.|...+++.+.+.-..++..+..
T Consensus 194 ~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 194 REAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHc
Confidence 5556666665544444555555544
No 81
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.86 E-value=0.19 Score=50.68 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=103.6
Q ss_pred ccc-CCCcchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 003214 468 EFS-SPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (838)
Q Consensus 468 ~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~i 544 (838)
.|. +.+|+++.+|+..+|..+.+.+ +++.. ...++.+.+.|.++++.||..|..|+.++....+....++.|++.+
T Consensus 20 lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 20 LLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred HHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 345 4689999999999999876553 33332 4567888899999999999999999999877765566778888888
Q ss_pred HHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHH
Q 003214 545 LDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621 (838)
Q Consensus 545 l~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i 621 (838)
++..... ..+++. -+.+|..+. +++....++...+..|+++|.+++. ..+..++.++..
T Consensus 99 c~~~~s~--~lns~~Q~agLrlL~nLt------v~~~~~~~l~~~i~~ll~LL~~G~~---------~~k~~vLk~L~n- 160 (254)
T PF04826_consen 99 CEETVSS--PLNSEVQLAGLRLLTNLT------VTNDYHHMLANYIPDLLSLLSSGSE---------KTKVQVLKVLVN- 160 (254)
T ss_pred HHHHhcC--CCCCHHHHHHHHHHHccC------CCcchhhhHHhhHHHHHHHHHcCCh---------HHHHHHHHHHHH-
Confidence 8765542 112221 223333331 2221222222233344556665321 123334443333
Q ss_pred HHhhcCChHHHHH-HHhhHHHHHHHHhccC-hhhHHHHHHHHHHHhhhc
Q 003214 622 LESVSRLPHLFVQ-IEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFF 668 (838)
Q Consensus 622 ~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~-~~~~~~~~l~ll~~~~~~ 668 (838)
+.++|...+. +...+.+-+...++.+ ..+.+-.++.+..++.++
T Consensus 161 ---LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 ---LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ---hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 3445543332 2234444555555553 356666666666666543
No 82
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=9.8 Score=43.72 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=77.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++...|.-.|.+...+-+ +. .++--++++.+..+|++++.++.+-|+-.+|+.+ ++|..+.+.+-+-+
T Consensus 82 ~~f~dKRiGYLaamLlLd---E~----qdvllLltNslknDL~s~nq~vVglAL~alg~i~-----s~EmardlapeVe~ 149 (866)
T KOG1062|consen 82 DNFLDKRIGYLAAMLLLD---ER----QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC-----SPEMARDLAPEVER 149 (866)
T ss_pred CCchHHHHHHHHHHHHhc---cc----hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC-----CHHHhHHhhHHHHH
Confidence 477778777776665443 22 2344567777888999999999999999998865 46788999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
.|+..++-||-.|+.|.-+|+... ++...-|++.
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~~ 183 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVIA 183 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhHH
Confidence 999999999999999999999885 3443333333
No 83
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.78 E-value=0.68 Score=47.11 Aligned_cols=241 Identities=13% Similarity=0.126 Sum_probs=120.7
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
+.+.|+++++.+|+||..+++..-+-..+ +.+....+++...+.+.|.. .-..|..++..++.... .-....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~--~~~~~l~gl~~L~~~~~---~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA--CVQPALKGLLALVKMKN---FSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh--hHHHHHHHHHHHHhCcC---CChhhH
Confidence 45567888999999999999987442211 22445667777777776542 33345777777775432 222235
Q ss_pred HHHHHHHHHHhhhh-----chhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003214 542 PQLLDEFFKLMNEV-----ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (838)
Q Consensus 542 ~~il~~L~~ll~~~-----~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (838)
..+++.+++-..-. +--.++.++..+++.+.+.+.....+.+..+++ .++ ++.|| +.+ ..+++
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~----~~~-gEkDP-----RnL--l~~F~ 146 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ----LID-GEKDP-----RNL--LLSFK 146 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH----Hhc-cCCCH-----HHH--HHHHH
Confidence 56666665533211 111377888888888877765555555554443 333 34455 222 24566
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChh---hH-HHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHh
Q 003214 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ---EV-FEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAI 692 (838)
Q Consensus 617 ~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~---~~-~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 692 (838)
.+..++....- ++....+.+.+..++=-.+.+... .. -++.-.-+...+...+.+. ...+|.+++-+.+...
T Consensus 147 l~~~i~~~~~~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa---~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 147 LLKVILQEFDI-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA---PFAFPLLLEKLDSTSP 222 (262)
T ss_pred HHHHHHHhccc-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH---HHHHHHHHHHHcCCCc
Confidence 66666555542 222222333333222222333211 11 1222222223332222221 2456777776654332
Q ss_pred hhhhhhhhhhhhhh-ccCcccccccCCchHHHHHHHHHHH
Q 003214 693 DFFPNILVPLDNYI-SRGTAHFLTCKEPDYQQSLWSMVSS 731 (838)
Q Consensus 693 ~~l~~~~~~L~~~i-~~~~~~~l~~~~~~~~~~l~~~~~~ 731 (838)
..-.+.+..|...+ .+|++.+. +|...+.+.++.
T Consensus 223 ~~K~D~L~tL~~c~~~y~~~~~~-----~~~~~iw~~lk~ 257 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYGADSLS-----PHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHH
Confidence 23333333333322 23444444 566666655443
No 84
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.68 E-value=1.5 Score=41.84 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=57.7
Q ss_pred CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (838)
||.+|..++.++|-++. . -+.......+.+..+|+|+++.||..|..+|..++... .+ ..-+.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~-r--~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----~i-k~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI-R--YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED----MI-KVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHH-h--CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----ce-eehhhhhHHHHHHH
Confidence 57899999999998864 2 23567889999999999999999999999999998763 22 22345556666666
Q ss_pred hhhc
Q 003214 553 NEVE 556 (838)
Q Consensus 553 ~~~~ 556 (838)
.+.+
T Consensus 73 ~D~~ 76 (178)
T PF12717_consen 73 VDEN 76 (178)
T ss_pred cCCC
Confidence 5543
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.53 E-value=9.2 Score=42.09 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=58.7
Q ss_pred hhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 003214 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 510 (838)
...+-++.++|.+.......+. +..+..||..-+--.+.++|+.|..++++|+- .-.++-..+.+...+-.|++
T Consensus 463 ey~~I~vrIL~iLG~EgP~a~~-----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~l-n~~d~~~~~sv~~~lkRcln 536 (898)
T COG5240 463 EYHQITVRILGILGREGPRAKT-----PGKYVRHIYNRLILENNIVRSAAVQALSKFAL-NISDVVSPQSVENALKRCLN 536 (898)
T ss_pred chhHHHHHHHHHhcccCCCCCC-----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-CccccccHHHHHHHHHHHhh
Confidence 3344455555555544433221 11122333333334678999999999999974 22333334667777778899
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 003214 511 DPELPVRVDSVFALRSFVE 529 (838)
Q Consensus 511 ~~~~~V~~~A~~al~~~~~ 529 (838)
|.|--||..|+.+++.+=.
T Consensus 537 D~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 537 DQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred cccHHHHHHHHHHHHhhhh
Confidence 9988999999999988753
No 86
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.47 E-value=2.6 Score=49.00 Aligned_cols=344 Identities=11% Similarity=0.075 Sum_probs=156.8
Q ss_pred hhHhHHHHHHHHHHHHhhcCC-cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChh-HHHHHHHHHHhc
Q 003214 431 RQKDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN-NFRKALHSVVSG 508 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~-~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~-~~~~~~~~l~~~ 508 (838)
+...++++++..+|+...-.. ..+..+.+.|.. .|..++.-+..-+..++.+.+-+.-.... .-..+++.+...
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~----~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVK----CLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHH----HHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 444467777777777543110 011112222222 33555666777777778777643211111 235678888888
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-HHHHHHHHHHhhcccchhh--HHHHHHH
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKFGEEMAPY--ALGLCQN 585 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-l~~~l~~iv~~~~~~i~p~--~~~l~~~ 585 (838)
+..++..++..|.++|.++..+......+.. ..++..|..+++..+... ...+|..+-. .++..+. ..+.++.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~~~~val~iLy~LS~--dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPNFREVALKILYNLSM--DDEARSMFAYTDCIPQ 415 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCchHHHHHHHHHHhcc--CHhhHHHHhhcchHHH
Confidence 8877777888899999998776542222211 113444555555433222 2222222211 1111111 1123444
Q ss_pred HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH-H-hhHHHHHHHHhccChhhHHHHHHHHHH
Q 003214 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-E-PTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (838)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l-~-~~~~p~i~~~l~~~~~~~~~~~l~ll~ 663 (838)
+++.+ .+..+++ .. .+.++.++. +..++....-+ + +.+-.++...+.... .-.+.++.
T Consensus 416 L~~~L----l~~~~~~-----v~------~eliaL~iN-La~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIR 475 (708)
T PF05804_consen 416 LMQML----LENSEEE-----VQ------LELIALLIN-LALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIR 475 (708)
T ss_pred HHHHH----HhCCCcc-----cc------HHHHHHHHH-HhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHH
Confidence 44322 1111111 00 111222221 11122111111 1 122223333332221 22334555
Q ss_pred HhhhcCCCCCHhhhHhHHHHHHHHh-hhHhhhhhhhhhhhhhhhccC--cccccccCCchHHHHHHHHHHHHhcCCCCCC
Q 003214 664 YMTFFSPTISLEMWSLWPLMMEALA-DWAIDFFPNILVPLDNYISRG--TAHFLTCKEPDYQQSLWSMVSSIMADKNLED 740 (838)
Q Consensus 664 ~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~l~~~~~~L~~~i~~~--~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~ 740 (838)
++..+.++.-..+....+.+.+++. ..+.++.-+++.+|.|.-.-+ ...+++. ..++..+.+.|.+...++
T Consensus 476 NiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~------~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 476 NISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQE------YNLLPWLKDLLKPGASED 549 (708)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHh------CCHHHHHHHHhCCCCCCh
Confidence 5555543322222334444445543 235567777777777765432 2233321 134455666665443333
Q ss_pred CccCchhHHHHHHHHHcccCcccchH--HHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhccChHHHHHHHHhcC
Q 003214 741 GDIEPAPKLIEVVFQNCKGQVDHWVE--PYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLG 811 (838)
Q Consensus 741 ~~~~~~~~ll~~i~~~~~~~~~~~l~--~il~~~l~~l~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~~ 811 (838)
.-...+..+++.+.. ....++.+. +++..++.-|.. .++.++...++.+|-+++.+. ..--.++.+.+
T Consensus 550 Dl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~-~tr~~ll~~~~ 620 (708)
T PF05804_consen 550 DLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE-ETREVLLKETE 620 (708)
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh-HHHHHHHhccc
Confidence 211222222222221 112233333 466777777766 467788889999998887663 33333444444
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=11 Score=42.89 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=68.2
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
-+.+-.+|++|+-++|+..+.++. ..+++|.+.++++.+..+|...+.-||-.|.-|+-.+... .+.+.|-.
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLc-----kLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pDa 172 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLC-----KLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPDA 172 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhh-----hcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCCh
Confidence 344556788899999999999984 4567899999999999999999989999999999998776 47788889
Q ss_pred HHHHHHHHH
Q 003214 542 PQLLDEFFK 550 (838)
Q Consensus 542 ~~il~~L~~ 550 (838)
|+++...+.
T Consensus 173 peLi~~fL~ 181 (948)
T KOG1058|consen 173 PELIESFLL 181 (948)
T ss_pred HHHHHHHHH
Confidence 998887654
No 88
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=16 Score=41.58 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=55.5
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccc-cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
.+++-...++..-+|.|+|..+....+.. -.+...+..+...+...+.|..+.||.+|..||.++-++.
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 45666667788899999999999987621 1244667888888889999999999999999999998554
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.59 E-value=0.095 Score=43.31 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=54.2
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++|..|..++.++|.+.. ....+.+.. .++++++.+|..|++.+|++.+ +..++.+..
T Consensus 12 ~~~~vr~~a~~~L~~~~~---------~~~~~~L~~----~l~d~~~~vr~~a~~aL~~i~~---------~~~~~~L~~ 69 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGD---------PEAIPALIE----LLKDEDPMVRRAAARALGRIGD---------PEAIPALIK 69 (88)
T ss_dssp SSHHHHHHHHHHHHCCTH---------HHHHHHHHH----HHTSSSHHHHHHHHHHHHCCHH---------HHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC---------HhHHHHHHH----HHcCCCHHHHHHHHHHHHHhCC---------HHHHHHHHH
Confidence 489999999999993321 122333333 4478999999999999998752 445667777
Q ss_pred cCCC-CCCchHHHHHHHHH
Q 003214 508 GLRD-PELPVRVDSVFALR 525 (838)
Q Consensus 508 ~l~~-~~~~V~~~A~~al~ 525 (838)
.+.+ ++..||..|+.||.
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 7765 45668999998874
No 90
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=0.8 Score=46.99 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=103.9
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH-
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP- 542 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~- 542 (838)
.+.+.++-+|.+|+-.+|..+--. ..- +.-+.+++.++..+.+++..|+..|..||.++..+. ++..|..+
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---~Yq~eiv~a 291 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT---EYQREIVEA 291 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc---hhhhHHHhc
Confidence 456678899999999999886310 000 223568899999999999999999999999998774 33333322
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHH--hhc---ccchhhHHH-HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003214 543 QLLDEFFKLMNEVENEDLVFTLETIVD--KFG---EEMAPYALG-LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (838)
Q Consensus 543 ~il~~L~~ll~~~~~~~l~~~l~~iv~--~~~---~~i~p~~~~-l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (838)
.-+..+.++++.. ....++.++.. ..+ -+-.+.+.+ ....|+ ++..- .++| + ..+...+
T Consensus 292 g~lP~lv~Llqs~---~~plilasVaCIrnisihplNe~lI~dagfl~pLV----rlL~~-~dnE----e---iqchAvs 356 (550)
T KOG4224|consen 292 GSLPLLVELLQSP---MGPLILASVACIRNISIHPLNEVLIADAGFLRPLV----RLLRA-GDNE----E---IQCHAVS 356 (550)
T ss_pred CCchHHHHHHhCc---chhHHHHHHHHHhhcccccCcccceecccchhHHH----HHHhc-CCch----h---hhhhHHH
Confidence 1233445555432 23333333321 111 011111111 112233 33332 2222 1 2345678
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhc
Q 003214 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 668 (838)
Q Consensus 617 ~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~ 668 (838)
++..+..+-+.+...+ .+.-.+|.+...+-.....+.++.-..+..+..+
T Consensus 357 tLrnLAasse~n~~~i--~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVI--RESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred HHHHHhhhhhhhhHHH--hhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 8888887765544332 3567788888877666667777777666666543
No 91
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.16 E-value=0.056 Score=47.68 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=58.1
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCC-hhHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc-chHHH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSD-QNNFR-KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILPQL 544 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~-~~~~~-~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p-~l~~i 544 (838)
.+.++++.+|..++++++.++...... ..... .+++.++..|++++..|+..|+.+|.+++.... +...- .-..+
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~ 92 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVLEAGG 92 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHHHCCC
Confidence 345667899999999999997631001 12233 788889999999889999999999999988753 11111 11235
Q ss_pred HHHHHHHhhhh
Q 003214 545 LDEFFKLMNEV 555 (838)
Q Consensus 545 l~~L~~ll~~~ 555 (838)
+..+.+++++.
T Consensus 93 l~~l~~~l~~~ 103 (120)
T cd00020 93 VPKLVNLLDSS 103 (120)
T ss_pred hHHHHHHHhcC
Confidence 55666666654
No 92
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.84 E-value=3.5 Score=49.30 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
+-.|..|+-++..++.+. .++..+..+++.++.++.|+...||.+|..+|..++....
T Consensus 437 ~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred chhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 345677777777777654 3556789999999999999999999999999999987653
No 93
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.63 E-value=19 Score=39.73 Aligned_cols=204 Identities=18% Similarity=0.229 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh-hhhchh-------hHHHHHHHHH
Q 003214 498 FRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM-NEVENE-------DLVFTLETIV 568 (838)
Q Consensus 498 ~~~~~~~l~~~l~-~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll-~~~~~~-------~l~~~l~~iv 568 (838)
...+++.++.... ..+...|..++.++..+++.+...+ .+..+++.+.... ...+.. .+..+..+++
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 4456666666643 4457799999999999999975344 3444444444444 111111 1344555555
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh----cC-C----hHHH-HHHHhh
Q 003214 569 DKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV----SR-L----PHLF-VQIEPT 638 (838)
Q Consensus 569 ~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~----~~-~----~~~~-~~l~~~ 638 (838)
-+.. |.+.+++..|.+ ++.... .....-+.+.-++.-. .. + +-.| +.+...
T Consensus 263 ~R~~----~~~~~~~~~L~~----lL~~~~-----------~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~ 323 (415)
T PF12460_consen 263 MRGH----PLATELLDKLLE----LLSSPE-----------LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ 323 (415)
T ss_pred HcCC----chHHHHHHHHHH----HhCChh-----------hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH
Confidence 5554 455555555554 332210 0112222222222221 10 0 1111 346677
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHhhhcCCC--CCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCccccccc
Q 003214 639 LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT--ISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716 (838)
Q Consensus 639 ~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~ 716 (838)
++|.+.........+--+..+.-++.++++.|. +-+++-.++|.+++.+.-.+.+.....+.+|..++...++.+-
T Consensus 324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~-- 401 (415)
T PF12460_consen 324 VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS-- 401 (415)
T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH--
Confidence 888887777665544445556677778876542 4466778999999988655566777888888888887765544
Q ss_pred CCchHHHHHHHHH
Q 003214 717 KEPDYQQSLWSMV 729 (838)
Q Consensus 717 ~~~~~~~~l~~~~ 729 (838)
+|++.+...+
T Consensus 402 ---~hl~sLI~~L 411 (415)
T PF12460_consen 402 ---EHLSSLIPRL 411 (415)
T ss_pred ---HHHHHHHHHH
Confidence 5666665543
No 94
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.48 E-value=15 Score=38.09 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=107.4
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCC---------------------------------Cc
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---------------------------------VG 474 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~---------------------------------~~ 474 (838)
..|...+++-.+-..+.............++.++...+.|.|... ++
T Consensus 14 ~~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~WK~~~ 93 (282)
T PF10521_consen 14 DPWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPWKSNP 93 (282)
T ss_pred CCCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCcccCC
Confidence 367766666655555543332221223345566666666655421 12
Q ss_pred chh-hHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc---c----cccchHHHHH
Q 003214 475 HLR-AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN---E----IRPILPQLLD 546 (838)
Q Consensus 475 ~lr-~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~---~----l~p~l~~il~ 546 (838)
.++ ....|++.+-.+.. .-.+++.-+++.++..+.|.++.+|..+|.++..+++...... . +.+.+.+.+.
T Consensus 94 ~~~~~~l~w~v~~~~~~~-~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 94 GLASHVLSWIVLSQLDRP-WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALF 172 (282)
T ss_pred cccHHHHHHHHHhcCCcc-hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHH
Confidence 233 34477776222111 0115688899999999999999999999999999999875222 1 1222233333
Q ss_pred HHHHHhhhh--chhh------HHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHH
Q 003214 547 EFFKLMNEV--ENED------LVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRA 617 (838)
Q Consensus 547 ~L~~ll~~~--~~~~------l~~~l~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 617 (838)
.++..+... +.++ ...++..++... .+.-.++...+...+.+.++.-+....+- .....+...++.
T Consensus 173 ~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~-----~~~~l~~~ll~~ 247 (282)
T PF10521_consen 173 PCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSF-----SYPRLRTVLLQQ 247 (282)
T ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceecccc-----CchhHHHHHHHH
Confidence 333322221 1111 233333443321 22222333333333333222222211110 012334567777
Q ss_pred HHHHHHhhcCChHHHHHHHhhHHHHHHHHhcc
Q 003214 618 ISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 649 (838)
Q Consensus 618 i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~ 649 (838)
+..+++.+|...- .....++|++..++.+
T Consensus 248 l~~~i~~lGi~~~---~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 248 LPPIIDELGISSV---KHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhccHHH---HHHHHHHHHHHHHhcC
Confidence 7888887775332 2236677777776653
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=14 Score=42.40 Aligned_cols=212 Identities=12% Similarity=0.180 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh--hchhhHHHHHHHHHHhhccc-
Q 003214 499 RKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENEDLVFTLETIVDKFGEE- 574 (838)
Q Consensus 499 ~~~~~~l~~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~~~l~~~l~~iv~~~~~~- 574 (838)
..-++.++..+.+ +=+-=|-.|+.+|+.|..... .+....-++++++ .++. .+.+.+..+|+++...+..+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR-~~Vga~Gmk~li~----vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYR-EEVGAQGMKPLIQ----VLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH-HHHHHcccHHHHH----HHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 4444444444432 112237799999999998874 3333334444444 3332 23344666677665543211
Q ss_pred ----------chhhHHHHHHHH------HHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhh
Q 003214 575 ----------MAPYALGLCQNL------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPT 638 (838)
Q Consensus 575 ----------i~p~~~~l~~~L------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~ 638 (838)
.......+...+ +..++..|+.. | -..+.+.++.++.++..-+..-.-.-...+.
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--D-------F~VR~~aIqLlsalls~r~~e~q~~ll~~P~ 166 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--D-------FHVRLYAIQLLSALLSCRPTELQDALLVSPM 166 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--c-------hhhhhHHHHHHHHHHhcCCHHHHHHHHHCch
Confidence 111111122211 22223334321 1 2345566777777776543211111111233
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHh--hhHhHHHHHHHHhhh----HhhhhhhhhhhhhhhhccCcc-
Q 003214 639 LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLE--MWSLWPLMMEALADW----AIDFFPNILVPLDNYISRGTA- 711 (838)
Q Consensus 639 ~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~--l~~l~~~l~~~~~~~----~~~~l~~~~~~L~~~i~~~~~- 711 (838)
-+.-+...+...-+....+++-++..+++..+.+..- .-.+|.++++++... |.-++.+++-++.+.+.+...
T Consensus 167 gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 167 GISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred hHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 3334444443333456688999999999877766553 347899999998542 233677888888888776632
Q ss_pred --cccccCCchHHHHHHH
Q 003214 712 --HFLTCKEPDYQQSLWS 727 (838)
Q Consensus 712 --~~l~~~~~~~~~~l~~ 727 (838)
.|.++ .|++.+.+
T Consensus 247 Q~~FrE~---~~i~rL~k 261 (970)
T KOG0946|consen 247 QNFFREG---SYIPRLLK 261 (970)
T ss_pred hhHHhcc---ccHHHHHh
Confidence 33332 56665543
No 96
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.28 E-value=15 Score=38.61 Aligned_cols=206 Identities=14% Similarity=0.123 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003214 316 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (838)
Q Consensus 316 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~ 395 (838)
...+..+|+-+..+.........+..+...++..+. ..+.-.. . .-+..|..++.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~-k~lkkg~--------------------~----~E~~lA~~~l~ 111 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALL-KSLKKGK--------------------S----EEQALAARALA 111 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHhccCC--------------------H----HHHHHHHHHHH
Confidence 445666666666665554444555555555444432 2211000 0 01334555666
Q ss_pred HHHhhcc-----cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC-cch---HHHHHHHhhccc
Q 003214 396 ELVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYK---SELERMLVQHVF 466 (838)
Q Consensus 396 ~l~~~~~-----~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~-~~~---~~~~~~l~~~v~ 466 (838)
-++-..| .+++..+.+.+.+.+... ....+.|-+++.++|.++....... +.. ..++.++.. ..
T Consensus 112 Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~------s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~-~~ 184 (309)
T PF05004_consen 112 LLALTLGAGEDSEEIFEELKPVLKRILTDS------SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLL-SI 184 (309)
T ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHHhCC------ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-Hh
Confidence 6655544 234445555555555432 1356778899999998876544322 222 233333322 11
Q ss_pred ccccC--------CCcchhhHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cc
Q 003214 467 PEFSS--------PVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DL 534 (838)
Q Consensus 467 p~l~~--------~~~~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~--~~ 534 (838)
+.... +.+-+...|+-.-|-........ .......++.+...|.+++.-||++|..+|.-+.+... ..
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~ 264 (309)
T PF05004_consen 185 LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEE 264 (309)
T ss_pred cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 22111 23556666655444444322110 13467788899999999999999999999998887754 11
Q ss_pred cccccchHHHHHHHHHHhh
Q 003214 535 NEIRPILPQLLDEFFKLMN 553 (838)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~ 553 (838)
+...+..+.+++.+-.+..
T Consensus 265 ~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 265 DFLYEDMEELLEQLRELAT 283 (309)
T ss_pred cccccCHHHHHHHHHHHHH
Confidence 2233444555544444444
No 97
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=26 Score=39.96 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=59.5
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDE 547 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~ 547 (838)
.+.++++-||+-+|.+++..... +|......-+.++.||.|.|.-+|+.|..-+..+++..+ +.+|++.
T Consensus 307 fiedsDqNLKYlgLlam~KI~kt---Hp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN--------l~eIVk~ 375 (877)
T KOG1059|consen 307 FIEDSDQNLKYLGLLAMSKILKT---HPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN--------LMEIVKT 375 (877)
T ss_pred hhhcCCccHHHHHHHHHHHHhhh---CHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh--------HHHHHHH
Confidence 34577888999999999998763 455667778899999999999999999999999998753 4555555
Q ss_pred HHHHhhh
Q 003214 548 FFKLMNE 554 (838)
Q Consensus 548 L~~ll~~ 554 (838)
|+.-+-.
T Consensus 376 LM~~~~~ 382 (877)
T KOG1059|consen 376 LMKHVEK 382 (877)
T ss_pred HHHHHHh
Confidence 5554443
No 98
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.95 E-value=0.95 Score=37.57 Aligned_cols=75 Identities=27% Similarity=0.468 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhH---HHHHHHHHHhhcccch
Q 003214 500 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEEMA 576 (838)
Q Consensus 500 ~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l---~~~l~~iv~~~~~~i~ 576 (838)
..++.++..++|+.+|||.+|...|+.++.... .-...++.++..++..+++.++=-. ...+.+++..+.+.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 456778888999999999999999999999853 3344578888888888876443223 3445555556655444
Q ss_pred h
Q 003214 577 P 577 (838)
Q Consensus 577 p 577 (838)
|
T Consensus 80 ~ 80 (92)
T PF10363_consen 80 P 80 (92)
T ss_pred H
Confidence 3
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.54 E-value=0.076 Score=43.90 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=48.1
Q ss_pred cCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 003214 470 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 549 (838)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~ 549 (838)
+++++.+|..|++++|++.. ..+++.+...++|+++.||..|+.||..+=+ +..++.|.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------------~~~~~~L~ 68 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRIGD------------PEAIPALI 68 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH------------HHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------HHHHHHHH
Confidence 57889999999999996532 3557777777799999999999999998621 33455555
Q ss_pred HHhhhh
Q 003214 550 KLMNEV 555 (838)
Q Consensus 550 ~ll~~~ 555 (838)
+++.+.
T Consensus 69 ~~l~~~ 74 (88)
T PF13646_consen 69 KLLQDD 74 (88)
T ss_dssp HHHTC-
T ss_pred HHHcCC
Confidence 666553
No 100
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.47 E-value=34 Score=40.07 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=69.3
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHH-HHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVV 506 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~-~~~l~ 506 (838)
+|...|-.|+..+|.+-.. .-+++++ .-|...++++++++|+.|+.+++.+-.. +++..... ...+.
T Consensus 104 ~N~~iR~~AlR~ls~l~~~--------el~~~~~-~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l 171 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK--------ELLGNII-DPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDIL 171 (757)
T ss_pred CCHHHHHHHHHHHHhcChH--------HHHHHHH-HHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHH
Confidence 4778999999999876542 1123333 2344567899999999999999987654 33444433 33334
Q ss_pred -hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 003214 507 -SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (838)
Q Consensus 507 -~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ 550 (838)
..+.|+++.|...|..++..+.++ ...+|...+...+-+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~~e-----~a~~~~~~~~~~i~~ 211 (757)
T COG5096 172 KELVADSDPIVIANALASLAEIDPE-----LAHGYSLEVILRIPQ 211 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhchh-----hhhhHHHHHHHHhhh
Confidence 445689999998998888887655 334454444444433
No 101
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.43 E-value=0.8 Score=43.10 Aligned_cols=89 Identities=27% Similarity=0.416 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHH---HHhh
Q 003214 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETI---VDKF 571 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~i---v~~~ 571 (838)
+...++..+..|...+-|-+.-|...+..+++.. ..+.+.|.+|+++..+-..+++-+.+. .+.+|..+ -...
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 5778899999999888889999999999999983 478899999999999999999776664 45556666 3467
Q ss_pred cccchhhHHHHHHHHH
Q 003214 572 GEEMAPYALGLCQNLA 587 (838)
Q Consensus 572 ~~~i~p~~~~l~~~L~ 587 (838)
++.+.||..++.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8889999988887665
No 102
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.25 E-value=14 Score=38.71 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcc
Q 003214 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGE 573 (838)
Q Consensus 497 ~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~ 573 (838)
.+..-+...+..+.+.....|..|-.++...+......+.+......++..+.+.++....++ ...++.-++-.++.
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 344446666667777667789999999999887765677788888999999999998765444 23445555555441
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHH-----hc
Q 003214 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRM-----LT 648 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~-----l~ 648 (838)
. .-..+++..+.+.+.+++..... ..-.+..++.+++-+.-..+.+++.... ++..++.+ .+
T Consensus 120 g--~~~~ei~~~~~~~L~~~l~d~s~-------~~~~R~~~~~aLai~~fv~~~d~~~~~~----~~~~le~if~~~~~~ 186 (309)
T PF05004_consen 120 G--EDSEEIFEELKPVLKRILTDSSA-------SPKARAACLEALAICTFVGGSDEEETEE----LMESLESIFLLSILK 186 (309)
T ss_pred C--ccHHHHHHHHHHHHHHHHhCCcc-------chHHHHHHHHHHHHHHHhhcCChhHHHH----HHHHHHHHHHHHhcC
Confidence 1 12345555555554455543221 1234467777777665555555444331 22222211 11
Q ss_pred c----------ChhhHHHHHHHHHHHhhhcC
Q 003214 649 T----------DGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 649 ~----------~~~~~~~~~l~ll~~~~~~~ 669 (838)
. +...+.-.+++-|+.++...
T Consensus 187 ~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~ 217 (309)
T PF05004_consen 187 SDGNAPVVAAEDDAALVAAALSAWALLLTTL 217 (309)
T ss_pred cCCCcccccCCCccHHHHHHHHHHHHHHhcC
Confidence 1 12358889999998887433
No 103
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=36 Score=39.70 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcc-ccccccc--chHHHHHHHHHH--hhhhchhhHHHHHHHHHHhh
Q 003214 498 FRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLNEIRP--ILPQLLDEFFKL--MNEVENEDLVFTLETIVDKF 571 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~-~~~V~~~A~~al~~~~~~~~-~~~~l~p--~l~~il~~L~~l--l~~~~~~~l~~~l~~iv~~~ 571 (838)
...+++.++..|+++ +.-+...||+||..+++.+. +...++. -+|-++++|+.+ +.- .|..+.+|+.|-++.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDv--AEQ~LqALE~iSR~H 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDV--AEQSLQALEKISRRH 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHH--HHHHHHHHHHHHhhc
Confidence 477888888888865 44489999999999999986 2233333 455555555443 221 245667777776655
Q ss_pred ccc
Q 003214 572 GEE 574 (838)
Q Consensus 572 ~~~ 574 (838)
+..
T Consensus 287 ~~A 289 (1051)
T KOG0168|consen 287 PKA 289 (1051)
T ss_pred cHH
Confidence 443
No 104
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=12 Score=43.39 Aligned_cols=187 Identities=12% Similarity=0.160 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHH---HHHHhhcccc
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLE---TIVDKFGEEM 575 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~---~iv~~~~~~i 575 (838)
.+.++..+..+.|+.+++|.+|...+..+++..+....+ ....+++..+..+.+-++=..+.++. ++++.+.+.+
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~--~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLI--QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 456888899999999999999999999999965322222 45567777777777644434566666 5566776665
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHH
Q 003214 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (838)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~ 655 (838)
.| .|...+.+ + .+.+. .+ . +..+=|+|..++++.|+-. ....+.+...+...+......+.
T Consensus 804 l~-------dL~e~Y~s---~-k~k~~--~d-~--~lkVGEai~k~~qa~Gel~---~~y~~~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 804 LP-------DLSEEYLS---E-KKKLQ--TD-Y--RLKVGEAILKVAQALGELV---FKYKAVLINTFLSGVREPDHEFR 864 (982)
T ss_pred HH-------HHHHHHHh---c-ccCCC--cc-c--eehHHHHHHHHHHHhccHH---HHHHHHHHHHHHHhcCCchHHHH
Confidence 55 33332211 1 11110 01 1 2233399999999987543 33335566666666665556677
Q ss_pred HHHHHHHHHhhhcC-CCCCHhhhHhHHHHHHHHhhhHhh-hhhhhhhhhhhhh
Q 003214 656 EEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAID-FFPNILVPLDNYI 706 (838)
Q Consensus 656 ~~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~-~l~~~~~~L~~~i 706 (838)
-.++..+..+.+.. ..++..+.+++..+..+...++.. ...+.+.++...+
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 77777777766543 456666777777777765443322 3344555554433
No 105
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=20 Score=41.71 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=115.3
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
.+..+.++.+-+|+.++..+..+.+-.-+.+ .....++...+..+.|.|.-|.+.|..++..+|+.. ++.+ +|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--~e~i---l~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--PEDI---LPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--chhh---HHH
Confidence 3335567788899999999999976221222 456889999999999999999999999999999875 3433 445
Q ss_pred HHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHH
Q 003214 544 LLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (838)
Q Consensus 544 il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (838)
+.+.+...-+....+. +-+++..++.+.|+-+.-|...++ .+|++-. +|| + ..++.+.+..++.
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li----~tfl~gv----rep----d-~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLI----NTFLSGV----REP----D-HEFRASSLANLGQ 873 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHH----HHHHHhc----CCc----h-HHHHHhHHHHHHH
Confidence 5554444444332333 667888888888887777765444 4444432 233 1 2346667777777
Q ss_pred HHHhhc-CChHHHHHHHhhHHHHHHHHhccChh-hHHHHHHHHHHHhhhcC
Q 003214 621 ILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 621 i~~~~~-~~~~~~~~l~~~~~p~i~~~l~~~~~-~~~~~~l~ll~~~~~~~ 669 (838)
+.+... .-++.++ .+...|-.+...|+. -..-.|..++..+++..
T Consensus 874 Lcq~~a~~vsd~~~----ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFH----EVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHHHhhhhhHHHH----HHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 777653 1122332 233333333334443 34456777777777654
No 106
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.74 E-value=5.2 Score=40.49 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=80.5
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
.+...++.++.++|..+..-... ++..++..+ ..+...+.+++|-+|-+|++++..++.- ..+....+..+..++.
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq-~~Ir~~Ggi--~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~~i~~Vc~ 100 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQ-DIIRDLGGI--SLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKMYIPQVCE 100 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHH-HHHHHcCCH--HHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHH
Confidence 47889999999999876542111 111111111 1233455778999999999999988752 2344456667777776
Q ss_pred cCC-C-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 003214 508 GLR-D-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVD 569 (838)
Q Consensus 508 ~l~-~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~ 569 (838)
.+. + -+..++.++.++|.++.-.......+.++++. ++.++...+...-..++..++.
T Consensus 101 ~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~----ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 101 ETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPD----LLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred HHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHH----HHHHHHcCChHHHHHHHHHHHH
Confidence 543 2 36679999999999884332234445555544 5566665443333455554443
No 107
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.53 E-value=55 Score=40.89 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVV 506 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~ 506 (838)
.....+.+-.+.-.++.. .++...+..+|. .|+..+..+.+-||.+|+.|++...+. ++.. .+.+-.++-
T Consensus 790 ~~~d~~~a~li~~~la~~----r~f~~sfD~yLk-~Il~~l~e~~ialRtkAlKclS~ive~---Dp~vL~~~dvq~~Vh 861 (1692)
T KOG1020|consen 790 RFADDDDAKLIVFYLAHA----RSFSQSFDPYLK-LILSVLGENAIALRTKALKCLSMIVEA---DPSVLSRPDVQEAVH 861 (1692)
T ss_pred ccccchhHHHHHHHHHhh----hHHHHhhHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHhc---ChHhhcCHHHHHHHH
Confidence 455555555555555543 123345666664 466677778899999999999999875 3332 366777788
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 507 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
..+.|+...||.+|..-+.+|+-.. ++.+..|-+.|.+++
T Consensus 862 ~R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~~i~erI 901 (1692)
T KOG1020|consen 862 GRLNDSSASVREAALDLVGRFVLSI--PELIFQYYDQIIERI 901 (1692)
T ss_pred HhhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhc
Confidence 8899999999999999999998764 455556666666554
No 108
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=39 Score=39.06 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=39.8
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
.|.++++.+|+.|+.+++-.. -+-..+-++-++-.+..|+.+-||-.||.|+-.+-+-.
T Consensus 116 ~L~DpN~LiRasALRvlSsIR-----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIR-----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 556788888888888776542 12233445555556667888888888888888876653
No 109
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.28 E-value=48 Score=38.36 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=87.8
Q ss_pred cCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003214 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~ 462 (838)
++..+.+..+.+..+.+..+.. =...+..+.+.+. +....+-+...++.+......... +.-..
T Consensus 405 g~e~K~aivd~Ii~iie~~pds-Ke~~L~~LCefIE----------Dce~~~i~~rILhlLG~EgP~a~~-----Pskyi 468 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPDS-KERGLEHLCEFIE----------DCEFTQIAVRILHLLGKEGPKAPN-----PSKYI 468 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHH----------hccchHHHHHHHHHHhccCCCCCC-----cchhh
Confidence 3667888888888888765431 1223344444443 334455566677766655543221 01112
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~ 540 (838)
.++...+--.+..+|+.|.-++.+|+- .++...+.+...+-.|+.|.|.-||..|..+++.+-+.. .....|+
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~---~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~--~~l~~~~ 541 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGA---QDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD--DVLNQNY 541 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhc---CCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh--hhhcccc
Confidence 234333345688999999999999982 244556788888889999999899999999999987543 3444444
No 110
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.83 E-value=17 Score=38.08 Aligned_cols=166 Identities=18% Similarity=0.155 Sum_probs=105.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhc-C----CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhh
Q 003214 11 QGALSPNPEERKAAEHSLNQFQY-T----PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (838)
Q Consensus 11 ~~~ls~d~~~r~~Ae~~L~~~~~-~----p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~ 85 (838)
-+..++|+.+|..|=.-|--+.- . ..++..+.+.+.. + +..+|-.|.-.+=..+..|=...-+.....-....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 35668999999999998875542 2 2466677777743 4 78888877655555554442211000000012334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccCCccCc
Q 003214 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEER 162 (838)
Q Consensus 86 k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~~~~~ 162 (838)
...+-+.+.+.+...+..++...++.++++.-.+--..||+++..++-..=++ .....-+||.-++..|.+.+.+.+
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q 191 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQ 191 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence 56777888888888888999999999999998775555789988888766555 223445677788887766443222
Q ss_pred chHHHHHHHHhHHHHHHHH
Q 003214 163 TPVYRIVEETFHHLLNIFN 181 (838)
Q Consensus 163 ~~~~~~~~~~~p~l~~~~~ 181 (838)
. .+...+.|.+..++.
T Consensus 192 ~---~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 192 E---RLAEAFLPTLRTLSN 207 (298)
T ss_pred H---HHHHHHHHHHHHHHh
Confidence 1 233334455554443
No 111
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=13 Score=38.69 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=69.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH--HHHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSV 505 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l 505 (838)
.+...++.++.-+-...+.+....++. .+..+ .. ++..++++++-||..|+|++|..+.-.++.++.. ...++.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~-~~ggl-~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLI-SLGGL-VP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHh-hccCH-HH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 478999999999998888876554432 22222 22 2225678899999999999999765222222211 2355666
Q ss_pred HhcCC-CCCCchHHHHHHHHHHHHHhcc
Q 003214 506 VSGLR-DPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 506 ~~~l~-~~~~~V~~~A~~al~~~~~~~~ 532 (838)
+..+. +.+..+|..|-.|+..++.+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 66665 4566799999999999999865
No 112
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.07 E-value=54 Score=37.45 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=74.7
Q ss_pred chhhHhHHHHHHHHHHHH-hhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 429 PYRQKDGALLAIGALCDK-LKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~-l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
|....--||.++|.+.+. +.+ .+..++..+|.. .+..+++|-.|+.++=+.-.- +.+--....-.+.+++
T Consensus 124 n~~fv~LAL~~I~niG~re~~e--a~~~DI~KlLvS------~~~~~~vkqkaALclL~L~r~-spDl~~~~~W~~riv~ 194 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREMAE--AFADDIPKLLVS------GSSMDYVKQKAALCLLRLFRK-SPDLVNPGEWAQRIVH 194 (938)
T ss_pred CcHHHHHHHHHHHhhccHhHHH--HhhhhhHHHHhC------CcchHHHHHHHHHHHHHHHhc-CccccChhhHHHHHHH
Confidence 556667778888877654 111 234455544432 234678888877777554221 1121223466788899
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (838)
.|+|.+..|-.+|..-+..++... ++..+.-++..+..|..+....
T Consensus 195 LL~D~~~gv~ta~~sLi~~lvk~~--p~~yk~~~~~avs~L~riv~~~ 240 (938)
T KOG1077|consen 195 LLDDQHMGVVTAATSLIEALVKKN--PESYKTCLPLAVSRLSRIVVVV 240 (938)
T ss_pred HhCccccceeeehHHHHHHHHHcC--CHHHhhhHHHHHHHHHHHHhhc
Confidence 999999999888888888877765 5777777777777777766543
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.96 E-value=21 Score=40.33 Aligned_cols=156 Identities=13% Similarity=0.187 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
-.+.-|.++|-...++|++ .-...+.....+... ++...|-.|+..+..++. +.+++..-+..+|.+
T Consensus 37 k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcED--------ed~~iR~~aik~lp~~ck---~~~~~v~kvaDvL~Q- 103 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCED--------EDVQIRKQAIKGLPQLCK---DNPEHVSKVADVLVQ- 103 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT---------SSHHHHHHHHHHGGGG-----T--T-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhc--------ccHHHHHHHHHhHHHHHH---hHHHHHhHHHHHHHH-
Confidence 3566788888888888865 222233333333332 356677777766665443 344455555565555
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc---ch
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP---IL 541 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p---~l 541 (838)
.|+...+.-+..+-+.+..+-... +...+..++..+... ...+..||..+..-|..-+.... .+.+.| .-
T Consensus 104 ---lL~tdd~~E~~~v~~sL~~ll~~d--~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~-~~~~~p~~E~e 176 (556)
T PF05918_consen 104 ---LLQTDDPVELDAVKNSLMSLLKQD--PKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLK-PELLTPQKEME 176 (556)
T ss_dssp ---HTT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS--TTTS---HHHH
T ss_pred ---HHhcccHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCc-HHHhhchHHHH
Confidence 345555444444434443332221 223445555555432 13455688887666655444432 455543 12
Q ss_pred HHHHHHHHHHhhhhchhhH
Q 003214 542 PQLLDEFFKLMNEVENEDL 560 (838)
Q Consensus 542 ~~il~~L~~ll~~~~~~~l 560 (838)
.-+++.+-+++.++..++.
T Consensus 177 ~~i~~~ikkvL~DVTaeEF 195 (556)
T PF05918_consen 177 EFIVDEIKKVLQDVTAEEF 195 (556)
T ss_dssp HHHHHHHHHHCTT--HHHH
T ss_pred HHHHHHHHHHHHhccHHHH
Confidence 2244455556666555443
No 114
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.94 E-value=13 Score=34.87 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhh
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKF 571 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~----l~~~l~~iv~~~ 571 (838)
.........+.+.|++++..-|-.++.-++..++.+. .+.+..+-...++.++..++..+... ...++..++...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567788888899999888889999999999999974 68887888899999999998854433 344555555543
Q ss_pred c-------ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHH
Q 003214 572 G-------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIM 643 (838)
Q Consensus 572 ~-------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~-~~~~~~~~l~~~~~p~i 643 (838)
. +..+|.++.+++.+.+ +.+. + .....+++++.+++..-. .......+++..+++.+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~----l~~~----~-------~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQ----LLQD----S-------SCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHH----HHhc----c-------ccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 3357887777777775 3321 0 123467888888888542 22234455666666654
No 115
>PF05536 Neurochondrin: Neurochondrin
Probab=86.24 E-value=33 Score=39.18 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCC-----CCCHhhhHhHHHHHH
Q 003214 611 AVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-----TISLEMWSLWPLMME 685 (838)
Q Consensus 611 ~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~-----~~~~~l~~l~~~l~~ 685 (838)
..-+++++..++ +..+.+..+ +....+|.+..++.+ .....|.++.+|..++...+ .-+..+..+.+.+.+
T Consensus 116 v~dalqcL~~Ia-s~~~G~~aL--l~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~ 191 (543)
T PF05536_consen 116 VDDALQCLLAIA-SSPEGAKAL--LESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLAR 191 (543)
T ss_pred HHHHHHHHHHHH-cCcHhHHHH--HhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHH
Confidence 446788888887 433333322 335566666666644 55678999999998886543 122334455565555
Q ss_pred HHhhhHhhhhhhhhhhhhhhhccCccc-ccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC
Q 003214 686 ALADWAIDFFPNILVPLDNYISRGTAH-FLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (838)
Q Consensus 686 ~~~~~~~~~l~~~~~~L~~~i~~~~~~-~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~ 760 (838)
.+......---+++..|..|+...+.. .....++.....+...+..++.++ .....+..+..+...+++.+|.+
T Consensus 192 ~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr-~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 192 DFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR-LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhChH
Confidence 553221122224566777777766311 111245578888988899999754 34445677899999999988864
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.97 E-value=63 Score=36.00 Aligned_cols=346 Identities=14% Similarity=0.127 Sum_probs=169.3
Q ss_pred hccccCChhhHhhhhcCHHHHHHHhc-----ccccccCCHHH---HHHHHHHHHHhhcccchHHHHHHHHHHHhccccCC
Q 003214 352 FPLMCFNDNDQKLWDEDPHEYVRKGY-----DIIEDLYSPRT---ASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDET 423 (838)
Q Consensus 352 ~~~l~~~~~d~e~w~~Dp~efi~~~~-----d~~~d~~s~r~---~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~ 423 (838)
.+.++.+......|..+-+|-+-+-- .+. ..|.|-. +-...+.-|.+...-+-+ .+.-+.+.+.+.
T Consensus 162 YhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n-~gy~Pn~~~isqYHalGlLyq~kr~dkm--a~lklv~hf~~n--- 235 (898)
T COG5240 162 YHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGN-EGYEPNGNPISQYHALGLLYQSKRTDKM--AQLKLVEHFRGN--- 235 (898)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhHhhCcCccCC-cccCCCCChHHHHHHHHHHHHHhcccHH--HHHHHHHHhhcc---
Confidence 45566778888889877766554321 111 1232221 222333334333321111 111122344331
Q ss_pred CCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHH
Q 003214 424 PVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH 503 (838)
Q Consensus 424 ~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~ 503 (838)
..-+..-|....+-.+.+.+.+...+..++.+||.. .+.+..-.+.--++..+..++.-.. .++...+.++
T Consensus 236 ----~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~----wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~~~vs 306 (898)
T COG5240 236 ----ASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNS----WLSDKFEMVFLEAARAVCALSEENV-GSQFVDQTVS 306 (898)
T ss_pred ----cccccchhheehHHHHHHHHHhChHHHHHHHHHHHH----HhcCcchhhhHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 133445566667777777776655455556665544 2344334444444444445543111 3456788888
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHH---------HHHHHhhhhchhh---HHHHHHHHHHh
Q 003214 504 SVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLD---------EFFKLMNEVENED---LVFTLETIVDK 570 (838)
Q Consensus 504 ~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~---------~L~~ll~~~~~~~---l~~~l~~iv~~ 570 (838)
.+-..|.++..+.|-+|.+.|.++.-... .-..-.|-++.++. .+..++++-..++ +...+-+++.-
T Consensus 307 ~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD 386 (898)
T COG5240 307 SLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHD 386 (898)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHh
Confidence 88888888888899999999999877642 01111222333322 2233444333333 45555555555
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHhcc-------cCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHH
Q 003214 571 FGEEMAPYALGLCQNLAAAFWRCMNTA-------EADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIM 643 (838)
Q Consensus 571 ~~~~i~p~~~~l~~~L~~~~~~~~~~~-------~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i 643 (838)
+++.+.-.+.+-+..|.-.|-+-|.+- --++ ...-+..+++++|+.++....+..+. ..+.+...|
T Consensus 387 ~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e----Gg~eFK~~~Vdaisd~~~~~p~skEr---aLe~LC~fI 459 (898)
T COG5240 387 MSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE----GGLEFKKYMVDAISDAMENDPDSKER---ALEVLCTFI 459 (898)
T ss_pred hccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHhhCchHHHH---HHHHHHHHH
Confidence 566555545454545543333322210 0011 01224556677777776665333221 112222223
Q ss_pred HHHhccChhhHHHHHHHHHHHhhhcCCC-CCH--hhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCch
Q 003214 644 RRMLTTDGQEVFEEVLEIVSYMTFFSPT-ISL--EMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD 720 (838)
Q Consensus 644 ~~~l~~~~~~~~~~~l~ll~~~~~~~~~-~~~--~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~ 720 (838)
+. .+|-+-+..++..+=+-.|. -.| .+..++.+++ ++ ..-.....+.+|.-|.....+.++
T Consensus 460 ED------cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--LE--N~ivRsaAv~aLskf~ln~~d~~~------ 523 (898)
T COG5240 460 ED------CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--LE--NNIVRSAAVQALSKFALNISDVVS------ 523 (898)
T ss_pred hh------cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--Hh--hhHHHHHHHHHHHHhccCcccccc------
Confidence 22 24555566666666543322 223 3345554432 11 112334556667666666555544
Q ss_pred HHHHHHHHHHHHhcCC
Q 003214 721 YQQSLWSMVSSIMADK 736 (838)
Q Consensus 721 ~~~~l~~~~~~~l~~~ 736 (838)
-+.+-.++.+++++.
T Consensus 524 -~~sv~~~lkRclnD~ 538 (898)
T COG5240 524 -PQSVENALKRCLNDQ 538 (898)
T ss_pred -HHHHHHHHHHHhhcc
Confidence 355666677777643
No 117
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=85.88 E-value=30 Score=32.21 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhh--CC-CCChhHHHHHHHHhhh
Q 003214 88 MVRDHILVFVAQV--PPLLRVQLGECLKTIIHAD--YP-EQWPHLLDWVKHNLQD 137 (838)
Q Consensus 88 ~ir~~ll~~l~~~--~~~i~~~~~~~i~~Ia~~d--~p-~~Wp~ll~~l~~~l~s 137 (838)
.||..|+.+|.+. ....-+.++.+++.+|..- ++ +.|++|.+.|.+...+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~ 57 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN 57 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc
Confidence 4788888998542 2345566677777766543 46 7899999999886644
No 118
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.33 E-value=53 Score=35.70 Aligned_cols=210 Identities=13% Similarity=0.146 Sum_probs=118.0
Q ss_pred hhHhhhhcCH---HHHHHHhccc--ccccCCHHHHHHH-HHHHHHhh-cc--cchHHHHHHHHHHHhccccCCCCCCcch
Q 003214 360 NDQKLWDEDP---HEYVRKGYDI--IEDLYSPRTASMD-FVSELVRK-RG--KENLQKFIQFIVGIFKRYDETPVEYKPY 430 (838)
Q Consensus 360 ~d~e~w~~Dp---~efi~~~~d~--~~d~~s~r~~a~~-ll~~l~~~-~~--~~~~~~il~~~~~~l~~~~~~~~~~~~~ 430 (838)
++.+.|.+|+ ..++++.... +.+..+-|..|.. +...+++. ++ .+.+..++..+.+.+... .+.
T Consensus 272 ~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-------~~~ 344 (516)
T KOG2956|consen 272 DSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-------EDE 344 (516)
T ss_pred cchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-------hhh
Confidence 3445555433 3455554321 1122345555654 55555543 22 345666777777777642 366
Q ss_pred hhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCc-chhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 003214 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 509 (838)
..|.-|+..++-+...=... +.+.-+-.+.+ ++-.-.+.++ .+|.++=-++.-.+.+. +......+-+.++.
T Consensus 345 ~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K-~Leaa~ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt-- 417 (516)
T KOG2956|consen 345 IIKKLALRVLREMLTNQPAR--LFDSTEIAICK-VLEAAKDSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT-- 417 (516)
T ss_pred HHHHHHHHHHHHHHHhchHh--hhchHHHHHHH-HHHHHhCCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc--
Confidence 78888888887665542211 11111121222 2222234444 34443333232233332 11222333333333
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhc-ccchhhHHHHHHH
Q 003214 510 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFG-EEMAPYALGLCQN 585 (838)
Q Consensus 510 ~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~-~~i~p~~~~l~~~ 585 (838)
.|-+.-+.+...+.++++... .+.+.+.+++++..+++--+..++. +.+.+|=+++.+.| +++.||...+...
T Consensus 418 --~D~~~~~~~iKm~Tkl~e~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 418 --ADEPRAVAVIKMLTKLFERLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred --CcchHHHHHHHHHHHHHhhcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 455566677889999998875 7888888888888888877665443 37788888889999 8999998887764
Q ss_pred H
Q 003214 586 L 586 (838)
Q Consensus 586 L 586 (838)
-
T Consensus 495 k 495 (516)
T KOG2956|consen 495 K 495 (516)
T ss_pred H
Confidence 3
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.06 E-value=2.2 Score=35.38 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=53.8
Q ss_pred ccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 467 p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
..++++.+-+|+.++..+++..+-.-........++..++..|+|+|.=|.+.|+.++..+++..
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 35678888899999999999865321123457899999999999999999999999999999885
No 120
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.97 E-value=3.2 Score=50.85 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=26.2
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 003214 469 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (838)
Q Consensus 469 l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~ 527 (838)
+.++++.+|..|.+.+|.... ...++.++..|+|++..||..|+.||..+
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA---------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 344555566666666554321 11234555555566656666666666553
No 121
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.76 E-value=16 Score=42.72 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=88.5
Q ss_pred HHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCC--CCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcc
Q 003214 634 QIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTA 711 (838)
Q Consensus 634 ~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~ 711 (838)
.+...++|++..-+......--...+..++.++.+.| .+-|++..++|.+++.+.--+.+.--+....+.-++...+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 3556777777777763322222333445556666543 46688889999999998543444434556666666555544
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCC-CCCCccCchhHHHHHHHHHcccC-cccchHHHHHHHHHHHhhh
Q 003214 712 HFLTCKEPDYQQSLWSMVSSIMADKN-LEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRRA 779 (838)
Q Consensus 712 ~~l~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~ll~~i~~~~~~~-~~~~l~~il~~~l~~l~~~ 779 (838)
..- .+...++..+-.+=.+.+ +....+..|.+++.++.+..|.. .-+|-+.++.++.+.|.++
T Consensus 943 L~t-----~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 943 LQT-----EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred cch-----HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 322 566666554433322222 12333567889999999988865 7889999999999888764
No 122
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.02 E-value=23 Score=36.64 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=83.7
Q ss_pred cchhhHhHHH-HHHHHHHH-HhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC-------ChhHH
Q 003214 428 KPYRQKDGAL-LAIGALCD-KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS-------DQNNF 498 (838)
Q Consensus 428 ~~~~~~ea~l-~~lg~i~~-~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~-------~~~~~ 498 (838)
+.|+...+.. ..+..+.. .+ +.+.+...+ +++...++..+.+..+-.|.++|.++..+.+-... .....
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~-~~~~i~~~~-~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQL-DRPWISQHW-PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcC-CcchHHHhh-hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChH
Confidence 3788877544 44444444 22 222222222 33333344444566899999999999998652211 11123
Q ss_pred HHHHHHHHhcCC--------CCCCchHHHHHHHHHHHHHhcc--cccccccchHHHH-HHHHHHhhhhch---h----hH
Q 003214 499 RKALHSVVSGLR--------DPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLL-DEFFKLMNEVEN---E----DL 560 (838)
Q Consensus 499 ~~~~~~l~~~l~--------~~~~~V~~~A~~al~~~~~~~~--~~~~l~p~l~~il-~~L~~ll~~~~~---~----~l 560 (838)
.-+..++.+++. +....+-..|-.|+..++.... ....-...+..++ +.++.-+..... . .+
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 444445555554 3344555667777777765421 1112222233333 324444433222 2 25
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 561 VFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 561 ~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
+..+..++..+|-....|...++..+.+
T Consensus 245 l~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5666777777777777777777766665
No 123
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=84.02 E-value=38 Score=37.27 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc
Q 003214 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (838)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~ 466 (838)
|.....++..+..++.+ .-..+...+...+.++.... ....-..-+|-.+|++..+... +.+.....++.+.++
T Consensus 150 R~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~---~~~~gI~elLeil~sii~gf~~--plk~eh~~fl~~vll 223 (409)
T PF01603_consen 150 RDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYET---ERHNGIAELLEILGSIINGFAV--PLKEEHKQFLRKVLL 223 (409)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTT---S--STHHHHHHHHHHHHTT--S--S--HHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHH
Confidence 33344555555544422 12233333334443332211 2455566677788877776532 345566788999999
Q ss_pred ccccCCC-cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 003214 467 PEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (838)
Q Consensus 467 p~l~~~~-~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il 545 (838)
|+...++ ..-...-..++.+|.+ +++.....++..++++=--.+..-.+.-..=+..+++..+ ++.+.+...++.
T Consensus 224 PLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~-~~~f~~i~~~lf 299 (409)
T PF01603_consen 224 PLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP-PEEFQKIMVPLF 299 (409)
T ss_dssp GGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 9998764 4445666777777765 2667788899999988654555555666667777777664 677888888888
Q ss_pred HHHHHHhhhhch
Q 003214 546 DEFFKLMNEVEN 557 (838)
Q Consensus 546 ~~L~~ll~~~~~ 557 (838)
..+..+++....
T Consensus 300 ~~la~ci~S~h~ 311 (409)
T PF01603_consen 300 KRLAKCISSPHF 311 (409)
T ss_dssp HHHHHHHTSSSH
T ss_pred HHHHHHhCCCCH
Confidence 888888876544
No 124
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=83.11 E-value=7.2 Score=41.19 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhcc---Chhh-HHHHHHHHHHHhhhcCCC-CCHhhhHhHH----H
Q 003214 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT---DGQE-VFEEVLEIVSYMTFFSPT-ISLEMWSLWP----L 682 (838)
Q Consensus 612 ~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~---~~~~-~~~~~l~ll~~~~~~~~~-~~~~l~~l~~----~ 682 (838)
..++..+.+.++...+...+.. ..+-|++..++.. ...+ -..+++.++++++.+.+. +.|.+..++. .
T Consensus 45 keIL~Li~t~i~~~~~~~~v~~---~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 45 KEILKLIETFISKAEDPEEVAN---NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHT-S-HHHHHH---HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3567777777776654333333 3333444445432 1222 346888888888876432 4454444444 4
Q ss_pred HHHHHhhhH---hhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc
Q 003214 683 MMEALADWA---IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG 759 (838)
Q Consensus 683 l~~~~~~~~---~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~ 759 (838)
.++.+.++. .++.......|++.+....+.+++ -+++....++..+.-.+.++..+- ...++.++..++.++..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~-lp~~~f~~~idsi~wg~kh~~~~I--~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ-LPPEQFKLVIDSIVWGFKHTNREI--SETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH-S-HHHHHHHHHHHHHHHTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHHHHHh
Confidence 444444322 344556677777777777666663 233445556665555555443222 24577888888877654
Q ss_pred ---C-----cccchHHHHHHHHHHHhhh
Q 003214 760 ---Q-----VDHWVEPYLRITVERLRRA 779 (838)
Q Consensus 760 ---~-----~~~~l~~il~~~l~~l~~~ 779 (838)
+ ...+.-.+++.++..+.+.
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 1 1234445566666666553
No 125
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=82.60 E-value=9 Score=37.12 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC---------
Q 003214 558 EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL--------- 628 (838)
Q Consensus 558 ~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~--------- 628 (838)
+.++.++.++.++++..-.|++..++..+.+ |.+..+ -..+..+=++++..++++|..
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~-----lr~~~~--------f~~~~~~e~~lgaAi~amGpe~vL~~lPLn 84 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGD-----LRESED--------FSFRKELEQVLGAAIRAMGPEQVLSILPLN 84 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHH-----HHcCCC--------cchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence 4588888999999988877888888877775 222111 112345666777778877631
Q ss_pred ---hHHHHHHHhhHHHHHHHHhccCh-hhHHHHHHHHHHHhhhcC-------C--------CCCHhhhHhHHHHHHHHhh
Q 003214 629 ---PHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFS-------P--------TISLEMWSLWPLMMEALAD 689 (838)
Q Consensus 629 ---~~~~~~l~~~~~p~i~~~l~~~~-~~~~~~~l~ll~~~~~~~-------~--------~~~~~l~~l~~~l~~~~~~ 689 (838)
++....=..-++|++...+.... ..|.++.+-+...+-+.. + .+-.++|.++|..++.-.|
T Consensus 85 l~~~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D 164 (198)
T PF08161_consen 85 LDNADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTD 164 (198)
T ss_pred ccCCCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCccc
Confidence 00001112568899988776544 456666665555443321 1 1123467777776665322
Q ss_pred hHhhhhhhhhhhhhhhhcc
Q 003214 690 WAIDFFPNILVPLDNYISR 708 (838)
Q Consensus 690 ~~~~~l~~~~~~L~~~i~~ 708 (838)
-.+.++.+.+.|.+.+..
T Consensus 165 -~~~~F~~~a~~L~~~L~~ 182 (198)
T PF08161_consen 165 -LAESFPSFAKLLGNALYD 182 (198)
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 223446666666555433
No 126
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.56 E-value=3.5 Score=26.12 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 003214 91 DHILVFVAQVPPLLRVQLGECLKTIIHA 118 (838)
Q Consensus 91 ~~ll~~l~~~~~~i~~~~~~~i~~Ia~~ 118 (838)
..+++++.+++..||...+.+++.|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4577888899999999999999999874
No 127
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.09 E-value=17 Score=39.96 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHH
Q 003214 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSY 664 (838)
Q Consensus 613 ~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~ 664 (838)
..++-+..++..+. ++.+..+...+...+..+++.......|.++.+|.+
T Consensus 274 ~FL~el~~il~~~~--~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 274 LFLNELEEILEVLP--PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 45666667766653 456777888999999999999988999999988863
No 128
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.86 E-value=25 Score=35.88 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
+.|..+.+++..+.+++....-..--.++...++... ...+++..--++.++..+.....- .++..++-..+.-+
T Consensus 97 ~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~----gEkDPRnLl~~F~l~~~i~~~~~~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 97 STRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID----GEKDPRNLLLSFKLLKVILQEFDI-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHhhhe
Confidence 4688899999999888743221000112222222111 024566555555555555444332 22333333333333
Q ss_pred ccccccCC--Cc--c----hhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccc
Q 003214 465 VFPEFSSP--VG--H----LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536 (838)
Q Consensus 465 v~p~l~~~--~~--~----lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~ 536 (838)
..-.++.| +| + |+.+-.-|+ ..++...+-.++.++..|.++.+.++..+..+|...++... .+.
T Consensus 172 FPI~F~pp~~dp~~IT~edLk~~L~~cl-------~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~-~~~ 243 (262)
T PF14500_consen 172 FPITFRPPPNDPYGITREDLKRALRNCL-------SSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG-ADS 243 (262)
T ss_pred eeeeeeCCCCCCCCCCHHHHHHHHHHHh-------cCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC-HHH
Confidence 22234422 22 2 222222222 22445567889999999998888899999999999998875 778
Q ss_pred cccchHHHHHHH
Q 003214 537 IRPILPQLLDEF 548 (838)
Q Consensus 537 l~p~l~~il~~L 548 (838)
+.||..++.+.|
T Consensus 244 ~~~~~~~iw~~l 255 (262)
T PF14500_consen 244 LSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHH
Confidence 888888888765
No 129
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.61 E-value=41 Score=38.81 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=69.4
Q ss_pred HhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 003214 461 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540 (838)
Q Consensus 461 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~ 540 (838)
..+.++.+..+++|.+|+-|+...|... .+.....+..-+.++++|.++.||-.|+.+...+..... +...
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~-----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~--~~~~-- 157 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLR-----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP--DLVE-- 157 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEe-----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh--hhcc--
Confidence 3455666778899999999998887653 234567788889999999999999999999999877653 2221
Q ss_pred hHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 003214 541 LPQLLDEFFKLMNEVENEDLVFTLETIVD 569 (838)
Q Consensus 541 l~~il~~L~~ll~~~~~~~l~~~l~~iv~ 569 (838)
-.+++..|-.++.+.+...+..++.++.+
T Consensus 158 ~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 158 DSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred ccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 23445555556654444456666655544
No 130
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=81.38 E-value=67 Score=34.06 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=44.4
Q ss_pred CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
..--++-|..+|++|-++ | |+.....+.+-+.+..|.+..||.+|.+-|-.||..
T Consensus 37 ~~k~k~lasq~ip~~fk~-f--p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKH-F--PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred chHHHHHHHHHHHHHHhh-C--chhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 444567778888888663 2 356788889999999999999999999999999876
No 131
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=80.88 E-value=87 Score=33.82 Aligned_cols=234 Identities=12% Similarity=0.227 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHhhcccc---hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcc--hHHHH
Q 003214 384 YSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY--KSELE 458 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~---~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~--~~~~~ 458 (838)
+..+.++.+.+...+++|++. .++.+++.+.+++.+....+. .++ ....++.-++.++........+ ...+.
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~--~D~-lv~~al~FL~~v~~~~~~~~lf~~~~~L~ 186 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK--YDI-LVSKALQFLSSVAESPHHKNLFENKPHLQ 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG--GHH-HHHHHHHHHHHHHTSHHHHTTT-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccH-HHHHHHHHHHHHHcchhHHHHhCCHHHHH
Confidence 457777888888888888653 334444445555554322211 122 2334444555555443222112 34677
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 537 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l 537 (838)
.++.+.|+|.+.- |-.- ...|. .+| |..+. =+.. .|.+ ..|.+|+.-++.++... .+.+
T Consensus 187 ~Iie~VI~Pnl~~-------~e~D-~ElfE----ddP~EYIrr----d~e~-sd~~-TrR~AA~dfl~~L~~~~--~~~v 246 (370)
T PF08506_consen 187 QIIEKVIFPNLCL-------REED-EELFE----DDPEEYIRR----DLEG-SDSD-TRRRAACDFLRSLCKKF--EKQV 246 (370)
T ss_dssp HHHHHTHHHHHS---------HHH-HHHHH----HSHHHHHHH----HSCS-S----SHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHhccCccCC-------CHHH-HHHHc----cCHHHHHHh----hccc-cccC-CcHHHHHHHHHHHHHHH--hHHH
Confidence 7777777775541 1110 00111 122 23222 2222 2332 36889999999998875 3555
Q ss_pred ccchHHHHHHHHHHhhhh------chhhHHHHHHHHHHhhcc---cchh--hHHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 003214 538 RPILPQLLDEFFKLMNEV------ENEDLVFTLETIVDKFGE---EMAP--YALGLCQNLAAAFWRCMNTAEADEDADDP 606 (838)
Q Consensus 538 ~p~l~~il~~L~~ll~~~------~~~~l~~~l~~iv~~~~~---~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (838)
.+.+...++.+++-.+.. ..+.....+.++..+... .++. -..++.+-+.+....-.. +.. +.
T Consensus 247 ~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~-----~~ 320 (370)
T PF08506_consen 247 TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDV-----NS 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS------S
T ss_pred HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccC-----CC
Confidence 555555555554422221 112355666666544321 1111 011222222211111122 111 12
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChh
Q 003214 607 GALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (838)
Q Consensus 607 ~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~ 652 (838)
.++++..++..+...-..+. ++ ....++|.+...|..+..
T Consensus 321 ~piLka~aik~~~~Fr~~l~--~~----~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 321 HPILKADAIKFLYTFRNQLP--KE----QLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp -HHHHHHHHHHHHHHGGGS---HH----HHHHHHHHHHHHTTSS-H
T ss_pred CcchHHHHHHHHHHHHhhCC--HH----HHHHHHHHHHHHhCCCCc
Confidence 46667666666666655442 22 235678888888876553
No 132
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=80.64 E-value=43 Score=34.26 Aligned_cols=166 Identities=11% Similarity=0.140 Sum_probs=89.4
Q ss_pred HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhc------CCCCCHhhhHhHHHHHHHHhhhH-----hhhhhhhhhhhh
Q 003214 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF------SPTISLEMWSLWPLMMEALADWA-----IDFFPNILVPLD 703 (838)
Q Consensus 635 l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~------~~~~~~~l~~l~~~l~~~~~~~~-----~~~l~~~~~~L~ 703 (838)
+..-++|++...- +...+...++.|+..++.- ..+-++.-+..++.+.+.+.+.- ...+..++..+.
T Consensus 42 v~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~ 119 (266)
T PF04821_consen 42 VQKDLIPILISYK--DDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLL 119 (266)
T ss_pred hhhhHHHHHHhcc--CchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 3467888887763 3567888889988888741 11123344555555555543321 234444444444
Q ss_pred hhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCcc--CchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhh
Q 003214 704 NYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI--EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK 781 (838)
Q Consensus 704 ~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~--~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~ 781 (838)
..+.......-+ .+...++.++..+.+++.-+....... ..-..+-..++..+..+ .++..++.-.++...
T Consensus 120 ~~l~~~~~~rt~-~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~------~v~~lLL~l~s~~~~ 192 (266)
T PF04821_consen 120 PPLEKDWEDRTE-RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFES------GVLDLLLTLASSPQE 192 (266)
T ss_pred HHhhcccccCCH-HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHc------CHHHHHHHHHhCccc
Confidence 444433332221 233578889999999987543222111 12334455555554431 233444443444433
Q ss_pred hHHHHHHHHHHHHhhc-cChHHHHHHHHh
Q 003214 782 SYLKCLLVQVIADALY-YNSSLTLSILHK 809 (838)
Q Consensus 782 ~~~~~~~l~v~~~~~~-~~~~~~~~~L~~ 809 (838)
..+...++++|+.++- .+|..++..-.+
T Consensus 193 ~~f~~~lLEIi~ll~k~~~p~~L~~~~~~ 221 (266)
T PF04821_consen 193 SDFNLLLLEIIYLLFKGQDPESLASAQPQ 221 (266)
T ss_pred cchhhHHHHHHHHHHcCCCHHHHhhcccc
Confidence 4466678888877664 467776655433
No 133
>PF05536 Neurochondrin: Neurochondrin
Probab=79.80 E-value=1.2e+02 Score=34.76 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhccChh-hHHHHHHHHHHHhhhcCCCCCHhhh--HhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccc
Q 003214 637 PTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHF 713 (838)
Q Consensus 637 ~~~~p~i~~~l~~~~~-~~~~~~l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~ 713 (838)
-.-+|.+..++..... ...+++++++..+..+ +.-...+. ...|.+++++.+ ........+.++.+.+.......
T Consensus 97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~ 174 (543)
T PF05536_consen 97 VSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKS 174 (543)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhh
Confidence 3467888888877666 9999999999999833 22222233 245666666533 22345556666666666555444
Q ss_pred cccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc---C---cccchHHHHHHHHHHHhhhhhhHHHHH
Q 003214 714 LTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG---Q---VDHWVEPYLRITVERLRRAEKSYLKCL 787 (838)
Q Consensus 714 l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~---~---~~~~l~~il~~~l~~l~~~~~~~~~~~ 787 (838)
.. ..+..+..++.-+.+.+... ....+..++.++..++...+. . -..|..++...+-.-+++.-++.-+..
T Consensus 175 ~~-~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 175 WA-EDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hh-hhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 43 23344555555555555422 333356678888888887742 1 124666666666555555333333333
Q ss_pred HHHH
Q 003214 788 LVQV 791 (838)
Q Consensus 788 ~l~v 791 (838)
.+.+
T Consensus 252 al~L 255 (543)
T PF05536_consen 252 ALNL 255 (543)
T ss_pred HHHH
Confidence 3333
No 134
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=79.67 E-value=1.3e+02 Score=34.99 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=58.2
Q ss_pred CcchhhHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH--HHHH
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL--LDEF 548 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~i--l~~L 548 (838)
+|=+-+.++-|+|+|.+|. +-.. -...++.+.+.|+- ..+|.+||.++-.+++..-.+-+=.+.+..+ ...+
T Consensus 206 npgl~~~cLdc~g~fVSWI--dInLIaNd~f~nLLy~fl~i--eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~l 281 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWI--DINLIANDYFLNLLYKFLNI--EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLEL 281 (980)
T ss_pred CchHHHHHHHHHHHHhhhh--hhhhhhchhHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 6889999999999998875 2211 24566777777763 3589999999999999864222223344443 2333
Q ss_pred HHHhhhh--chhhHHHHHHHHHHhhc
Q 003214 549 FKLMNEV--ENEDLVFTLETIVDKFG 572 (838)
Q Consensus 549 ~~ll~~~--~~~~l~~~l~~iv~~~~ 572 (838)
+..-+.- +.-++..-+..++..+|
T Consensus 282 fg~~s~dq~~d~df~e~vskLitg~g 307 (980)
T KOG2021|consen 282 FGYHSADQMDDLDFWESVSKLITGFG 307 (980)
T ss_pred HhhhccccccCchHHHHHHHHHhhcc
Confidence 3333221 11234555555555554
No 135
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=79.57 E-value=1.3e+02 Score=35.39 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=96.9
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccc----cccCCCcchhhHHHHHHHhhhccc-cCChhHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP----EFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALH 503 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p----~l~~~~~~lr~ra~~~l~~~~~~~-~~~~~~~~~~~~ 503 (838)
+-...+.++.++..++..-. .+. .++..-++| .+.++ -.+.-|+.++...+.-. .+..-....+++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~----~R~---~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPE----LRS---QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIP 414 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHH----HHH---HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence 44677888888887765311 111 222222222 33333 23333444454443210 001001234556
Q ss_pred HHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcc---cchhhH
Q 003214 504 SVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE---EMAPYA 579 (838)
Q Consensus 504 ~l~~~l~-~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~---~i~p~~ 579 (838)
.++..+. .++..+...+...+.++..+....+.+.. ...++.|+...-+....-++.++..+..+=++ .+.+|.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i 492 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE--GNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFI 492 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh--cCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 6666543 35556666666666666655431222221 12233333333222223356666666654321 123333
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH-HhhHHHHHHHHhccCh--hhHHH
Q 003214 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDG--QEVFE 656 (838)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l-~~~~~p~i~~~l~~~~--~~~~~ 656 (838)
.+++. ...+.+ ++ ...++|++.+..---.+.....-+ ...++|.+...+.+.. .+..-
T Consensus 493 ~~L~~--------~v~~~~-~e----------e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~L 553 (708)
T PF05804_consen 493 GDLAK--------IVSSGD-SE----------EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLL 553 (708)
T ss_pred HHHHH--------HhhcCC-cH----------HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHH
Confidence 33332 332221 11 134666666655432222222222 2589999999998754 36777
Q ss_pred HHHHHHHHhh
Q 003214 657 EVLEIVSYMT 666 (838)
Q Consensus 657 ~~l~ll~~~~ 666 (838)
++..++.++.
T Consensus 554 E~Vi~~gtla 563 (708)
T PF05804_consen 554 EVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHH
Confidence 7776777665
No 136
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.94 E-value=88 Score=32.96 Aligned_cols=126 Identities=12% Similarity=0.157 Sum_probs=64.6
Q ss_pred ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHH
Q 003214 402 GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAA 481 (838)
Q Consensus 402 ~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~ 481 (838)
+.++++.++..+.+++... | ... . ++...+..-.. ..+.+++. .+..++.+++..|+
T Consensus 70 ~~d~v~yvL~li~dll~~~---~------~~~-~---~~~~~~~~~~~-----~~~~~fl~-----ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDD---P------SRV-E---LFLELAKQDDS-----DPYSPFLK-----LLDRNDSFIQLKAA 126 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-S---S------SSH-H---HHHHHHH-TTH-------HHHHHH-----H-S-SSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---H------HHH-H---HHHHhcccccc-----hhHHHHHH-----HhcCCCHHHHHHHH
Confidence 4578888888888877642 1 111 1 12222221111 13445543 34567899999999
Q ss_pred HHHHhhhccccC-Ch----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003214 482 WVAGQYAHINFS-DQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (838)
Q Consensus 482 ~~l~~~~~~~~~-~~----~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (838)
.+++.+...... .. +.+..+++.+.+.+++++..++..|+.++..++.....+..+.. ...++.+..++
T Consensus 127 ~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 127 FILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 999998653211 11 22344444444444444556778899999999977653333322 45555555555
No 137
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.72 E-value=28 Score=32.51 Aligned_cols=127 Identities=19% Similarity=0.290 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-----CCCcchhhHHH
Q 003214 407 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAA 481 (838)
Q Consensus 407 ~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~-----~~~~~lr~ra~ 481 (838)
+.+++.+.+.+... .+|..|..++.++|.++- +. +++ .+.+..... +++.-......
T Consensus 9 P~LL~~L~~iLk~e-------~s~~iR~E~lr~lGilGA-LD---P~~-------~k~~~~~~~~~~~~~~~~~~~~~~l 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-------QSQSIRREALRVLGILGA-LD---PYK-------HKSIQKSLDSKSSENSNDESTDISL 70 (160)
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHhhhccc-cC---cHH-------HhcccccCCccccccccccchhhHH
Confidence 45666666666541 369999999999998752 21 111 111111111 11111122212
Q ss_pred HHHHhhhccccCChhH-HHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch
Q 003214 482 WVAGQYAHINFSDQNN-FRKALHSVVSGLRDPELP-VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (838)
Q Consensus 482 ~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~-V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 557 (838)
. ....+ ...++. ..-++..++..|+|+... -+..++.|+-.++.... .. -.||++.++..++..+.+.+.
T Consensus 71 ~-~~~~~---~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~-~~-cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 71 P-MMGIS---PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLG-LK-CVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred h-hccCC---CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC-cC-chhHHHHHhHHHHHHHHhCCH
Confidence 1 11111 112233 466778888888887654 44567888888886643 33 389999999999999987654
No 138
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=76.97 E-value=2.7 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 003214 500 KALHSVVSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 500 ~~~~~l~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
..++.++.+|.+++..|+..|+.||.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46788888999888899999999999875
No 139
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.70 E-value=17 Score=37.04 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
|-....+.+.+..|+...++.....+...|..+..+..+ ..-..--+|+.+++-+...+.+. ....++..+.
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN-----lRS~VsraA~~t~~difs~ln~~--i~~~ld~lv~- 173 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN-----LRSAVSRAACMTLADIFSSLNNS--IDQELDDLVT- 173 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-
Confidence 445566778888888776654444455555555544221 12345566777777776665442 1122333332
Q ss_pred ccccccc---CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 464 HVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 464 ~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
.++. ..+.|+|..|-..+-...... . ...+++.+..+++...+.+|..|+.++.+++...
T Consensus 174 ---~Ll~ka~~dnrFvreda~kAL~aMV~~v--t---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 174 ---QLLHKASQDNRFVREDAEKALVAMVNHV--T---PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred ---HHHhhhcccchHHHHHHHHHHHHHHhcc--C---hHHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 2222 247899999988887765432 2 3667788888888888889999888877766554
No 140
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=76.21 E-value=16 Score=31.35 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCC----CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh-hHHHHHHHHHHhhc-c
Q 003214 500 KALHSVVSGLRD----PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE-DLVFTLETIVDKFG-E 573 (838)
Q Consensus 500 ~~~~~l~~~l~~----~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~-~l~~~l~~iv~~~~-~ 573 (838)
.+++.+-..++| .+..-|..|..++..++... .+.+.++.|+++-.|-..+...+.. ....+-..++...+ +
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~--~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLG--GSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHH
Confidence 334444444444 34557889999999999954 6888888899888777776654433 35677777887775 4
Q ss_pred cchhhHHHHHHHHHH
Q 003214 574 EMAPYALGLCQNLAA 588 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~ 588 (838)
++.|+..+++..+.+
T Consensus 89 ~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 89 DLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777666665554
No 141
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=73.77 E-value=2e+02 Score=34.24 Aligned_cols=260 Identities=13% Similarity=0.139 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC
Q 003214 435 GALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE 513 (838)
Q Consensus 435 a~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 513 (838)
.++.+++..++..... .++.+.+.+.-+..+. +..+.+|.+|+....-|++... -.+..+.++.++++...+.+
T Consensus 469 Ra~~~i~~fs~~~~~~----~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~~p~ild~L~qlas~~s 543 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVIN----PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSLQPMILDGLLQLASKSS 543 (1005)
T ss_pred HHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccccchHHHHHHHHHccccc
Confidence 6666777665543322 2233333333333333 4567889999888877775321 12456888888888876554
Q ss_pred CchHHHHHHHHHHHHHhcc-ccccccc-chHHHHHHHHHHhhhhchhhHHHHHHHHHHhh---cccchhhHHHHHHHHHH
Q 003214 514 LPVRVDSVFALRSFVEACR-DLNEIRP-ILPQLLDEFFKLMNEVENEDLVFTLETIVDKF---GEEMAPYALGLCQNLAA 588 (838)
Q Consensus 514 ~~V~~~A~~al~~~~~~~~-~~~~l~p-~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~---~~~i~p~~~~l~~~L~~ 588 (838)
.-|-..-..||+..+.-.. ....... ..|.++.-.+...++. .+....+.+++.. .+.-.|+...+++.+++
T Consensus 544 ~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP---~V~~~~qd~f~el~q~~~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP---QVASLAQDLFEELLQIAANYGPMQERLIPSLIS 620 (1005)
T ss_pred HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4455556667777665432 1122222 2223333222322222 2332222222211 12233555555555554
Q ss_pred HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHH-hccChhhHHHHHHHHHHHhhh
Q 003214 589 AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRM-LTTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 589 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~-l~~~~~~~~~~~l~ll~~~~~ 667 (838)
+++...++. .+....-.++.++++++.-... .-..+...++|.+..| +..+..+.+..+-+++..++.
T Consensus 621 ----il~~~~~~~-----~~~l~~~aidvLttvvr~tp~p--L~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 621 ----VLQLNADKA-----PAGLCAIAIDVLTTVLRNTPSP--LPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred ----HHcCccccc-----CchhhHHHHHHHHHHHhcCCCC--ccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 444332111 0122234578888888875422 2233445666666555 555677888888888888886
Q ss_pred cCC--------CCCHhhhHhHHHHHHHHhhhHhhhhh-hhhhhhhhhhccCcccc
Q 003214 668 FSP--------TISLEMWSLWPLMMEALADWAIDFFP-NILVPLDNYISRGTAHF 713 (838)
Q Consensus 668 ~~~--------~~~~~l~~l~~~l~~~~~~~~~~~l~-~~~~~L~~~i~~~~~~~ 713 (838)
... .-.-.+|.++..+.++++-...+.-. .+-+++...+.+.+.++
T Consensus 690 ~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el 744 (1005)
T KOG2274|consen 690 VTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSEL 744 (1005)
T ss_pred cCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHh
Confidence 631 11122677766666665321111111 33444555555555543
No 142
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=73.30 E-value=8.1 Score=39.61 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=74.6
Q ss_pred hhhHhHHHHHHHHHHHHhhcCCcch--HHHHHHHhhcccccccCCCcchhhHHHHHHHhhhcc--ccCChhHHHHHHHHH
Q 003214 430 YRQKDGALLAIGALCDKLKQTEPYK--SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI--NFSDQNNFRKALHSV 505 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~~~~--~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~--~~~~~~~~~~~~~~l 505 (838)
-...||+ +++..++.+-+..-... ..-.+.|.+ .|.+++.-+|-.+.|.+|..+.- ..++.-.--.+++-+
T Consensus 130 mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiq----lL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl 204 (526)
T COG5064 130 MLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQ----LLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204 (526)
T ss_pred HHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHH----HHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH
Confidence 3444555 47777777644311110 011122323 34567788999999999998641 111211112344555
Q ss_pred HhcCCCCC--CchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHH
Q 003214 506 VSGLRDPE--LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL 564 (838)
Q Consensus 506 ~~~l~~~~--~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l 564 (838)
+..+.++- ...--.|.++|.++|...+.++.- ..+...+..|.+++...+.+.+..++
T Consensus 205 L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w-~~isqalpiL~KLiys~D~evlvDA~ 264 (526)
T COG5064 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW-SNISQALPILAKLIYSRDPEVLVDAC 264 (526)
T ss_pred HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 66655432 233447899999999987633333 35667777888888877777665544
No 143
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.24 E-value=4.7 Score=49.46 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=55.3
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++|..|.++..++|.+.. . . -+ ..+.+.|.++++.||..|.+.||++.. + ....+.+..
T Consensus 819 ~d~~VR~~Aa~aL~~l~~----~-~---a~-----~~L~~~L~D~~~~VR~~A~~aL~~~~~----~----~~a~~~L~~ 877 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA----D-V---AV-----PALVEALTDPHLDVRKAAVLALTRWPG----D----PAARDALTT 877 (897)
T ss_pred CChHHHHHHHHHHHhccc----c-c---hH-----HHHHHHhcCCCHHHHHHHHHHHhccCC----C----HHHHHHHHH
Confidence 478888888888875532 1 0 11 223445678999999999999999621 2 234555667
Q ss_pred cCCCCCCchHHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRS 526 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~ 526 (838)
.++|++.-||..|+.||..
T Consensus 878 al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhCCCHHHHHHHHHHHhh
Confidence 7889999999999999863
No 144
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=72.67 E-value=30 Score=29.69 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCCC--Cch--HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-HHHHHHHHHHhh
Q 003214 497 NFRKALHSVVSGLRDPE--LPV--RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKF 571 (838)
Q Consensus 497 ~~~~~~~~l~~~l~~~~--~~V--~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-l~~~l~~iv~~~ 571 (838)
++-.+++.+-+.++|.+ .++ |..|..|+..++... ...+.++.|+++-.|-..+...+... ...+-..++...
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~--g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM--GKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 34445555555666543 444 889999999999975 58888899998887777776544332 556667777776
Q ss_pred cc-cchhhHHHHHHHHH
Q 003214 572 GE-EMAPYALGLCQNLA 587 (838)
Q Consensus 572 ~~-~i~p~~~~l~~~L~ 587 (838)
++ ++.|...+++..+.
T Consensus 86 ~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 86 KEEELGPLLDQIFAAIL 102 (107)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 53 45555555554444
No 145
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=72.36 E-value=10 Score=31.59 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=41.6
Q ss_pred ccCCHHHHHHHHHHHHHhhcccc---hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHH
Q 003214 382 DLYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (838)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~~---~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~ 445 (838)
+.|..|.-|++++..+++.++.. .-+.+...+.+.+. +|. .++...++|+.+++.+..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~----d~~--~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALL----DPK--KPLGTHYGAIVGLSALGP 78 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHHHH
Confidence 35789999999999999998752 23344444444443 332 478899999999998854
No 146
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=72.08 E-value=24 Score=42.93 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhcccchH---HHHHHHHHHHhccccCCC-CCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003214 387 RTASMDFVSELVRKRGKENL---QKFIQFIVGIFKRYDETP-VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (838)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~---~~il~~~~~~l~~~~~~~-~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~ 462 (838)
|..|.-+|..+++.+|.... +.+.+++...++.+.... ..........+++-.+|... .. +.+.+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l---------~~-~~~~l- 818 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFL---------HP-LGSLL- 818 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhh---------hh-hhhhh-
Confidence 77788999999999986543 455566666666543211 00011222222221221111 11 11111
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (838)
..+...+.+.++.+|..|..++|-+.+.. .-+....++..++..+.+.+..++-.++..+-..+... ..-.+.||.+
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~-l~~~l~~~~~ 895 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV-LMVGLVPYNP 895 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh-hcccccccce
Confidence 12333345788999999999999886532 33678889999999999877777766665555555443 2577889999
Q ss_pred HHHHHHHHHhhhh
Q 003214 543 QLLDEFFKLMNEV 555 (838)
Q Consensus 543 ~il~~L~~ll~~~ 555 (838)
-++.-|+..++..
T Consensus 896 Llv~pllr~msd~ 908 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQ 908 (1549)
T ss_pred eehhhhhcccccc
Confidence 9999899988764
No 147
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.61 E-value=2.6e+02 Score=34.52 Aligned_cols=128 Identities=23% Similarity=0.275 Sum_probs=86.8
Q ss_pred HHHHHHHHhh---cc-cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc
Q 003214 391 MDFVSELVRK---RG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (838)
Q Consensus 391 ~~ll~~l~~~---~~-~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~ 466 (838)
.+++..+++. +| +.+++.+.+++.+.... |.-..+....-||..|+|-+.---.+ -...+++-++ +.+
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n----~~~~sdp~Lq~AAtLaL~klM~iSa~--fces~l~llf-tim- 969 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRN----PGLFSDPELQAAATLALGKLMCISAE--FCESHLPLLF-TIM- 969 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC----CCcCCCHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHH-HHH-
Confidence 4666667764 46 66777777777666543 33334678888999998865421100 0112343333 222
Q ss_pred ccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 467 p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
=.+|+|++|+.+...+|-++- .| |..+...-+.+...|+|+++-||..|...|..++-+.
T Consensus 970 --eksp~p~IRsN~VvalgDlav-~f--pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd 1029 (1251)
T KOG0414|consen 970 --EKSPSPRIRSNLVVALGDLAV-RF--PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND 1029 (1251)
T ss_pred --hcCCCceeeecchheccchhh-hc--ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh
Confidence 136899999999999988863 33 3456777788888999999999999999999988764
No 148
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.26 E-value=56 Score=36.51 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHHhhcccccccCCCcchhhHHHHHHHhhhcccc-CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 457 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF-SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 457 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+.+++ .|++-.+.++..-+|.|+|..++..+...- -++.....++..+.+.+-|.++.||..|..+|..+-+..
T Consensus 89 V~~~~-~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 89 VAGTF-YHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHH-HHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 44555 467777778889999999999999987531 123455667777777777889999999999999987654
No 149
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.03 E-value=41 Score=38.27 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc----chHHHHH
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP----YKSELER 459 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~----~~~~~~~ 459 (838)
..||. -..++..+.+-.|+-++... +.+.+.+.+ +....|-+.+-+.|.+.....+... |+..+..
T Consensus 277 ~Gpk~-islFl~kls~l~p~i~lrq~-~~~~~LLds--------es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~ 346 (1128)
T COG5098 277 SGPKD-ISLFLNKLSELSPGIMLRQY-EHFDELLDS--------ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND 346 (1128)
T ss_pred cChHH-HHHHHHHHhhcCchHHHHHH-HHHHHHhcc--------cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH
Confidence 34554 44567777776665444332 223344442 4788888888888888877654321 2223322
Q ss_pred HHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 460 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
|...+..-|.+.+|+.|..|+.++.+..+...+-+....++...+..+++|...+||--|..-+..++-.-
T Consensus 347 -Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 347 -LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred -HHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 22334445678899999999999999866433334457889999999999999999999999888877543
No 150
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=2.5e+02 Score=34.16 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
.-+|-+|+.=+..+....+.+....+++-+.+.++-. ++...|. +++.+++-+|..----+....++.+++..
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~----e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~k 427 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPA----EDDSAWH---GACLALAELALRGLLLPSLLEDVVPLILK 427 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcC----CchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3478889988999988888666666666555544321 1124687 88888887776522111112233343333
Q ss_pred ccccccc----CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc-----CCCCCCchHHHHHHHHHHHHHh
Q 003214 464 HVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG-----LRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 464 ~v~p~l~----~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~~V~~~A~~al~~~~~~ 530 (838)
-+.-+-. +...-+|..||+++-.|+..- ++..+.++++.+.++ +-|++.-+|-+|..|+...+..
T Consensus 428 aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray--s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 428 ALHYDVRRGQHSVGQHVRDAACYVCWAFARAY--SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhcC--ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 2221111 123579999999987776532 344445555544443 4588888999999999988765
No 151
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.58 E-value=29 Score=37.12 Aligned_cols=122 Identities=12% Similarity=0.190 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhH----hccccCChhhHhhhhcC
Q 003214 293 YAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIV----FPLMCFNDNDQKLWDED 368 (838)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i----~~~l~~~~~d~e~w~~D 368 (838)
.+|.|+..+-+.+...-.+ .-..+.+.++....++.++.. .+.+++-+++..++ -+.++-+++
T Consensus 211 LlPyf~~fI~~~v~~n~~~---nl~~L~~lm~~v~ALl~N~~l--~le~Ylh~Lip~vltclv~~~l~~~~~-------- 277 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQ---NLALLIYLMRMVRALLDNPNL--HLEPYLHQLIPSVLTCLVAKQLCSRPP-------- 277 (343)
T ss_pred hhhHHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHhcCCCC--chHHhHHHHHHHHHHHhhhHhhcCCCC--------
Confidence 4455555544443321110 334567778888888877654 34565555444333 222221111
Q ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccc---hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHH
Q 003214 369 PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 444 (838)
Q Consensus 369 p~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~---~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~ 444 (838)
.++.|..|.-|++++..++++++.. .-+.+...+.+.+.. |. .....++||+.+++.++
T Consensus 278 -----------~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d----~~--~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 278 -----------DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD----PK--KPLTTHYGAIVGLSALG 339 (343)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC----CC--CCcchhhHHHHHHHHhC
Confidence 1245889999999999999999753 334455444444432 22 24555999999988775
No 152
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=69.71 E-value=2.4e+02 Score=33.53 Aligned_cols=347 Identities=11% Similarity=0.052 Sum_probs=162.1
Q ss_pred hhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHH
Q 003214 364 LWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE--NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIG 441 (838)
Q Consensus 364 ~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~--~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg 441 (838)
.+...+..|+.-..| |..++|-+|.+-+..+.+.+..+ +...+.+-+.+... ...|+.++..--...
T Consensus 273 ~~s~v~~~~~~L~~D---dqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~--------d~~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 273 VKSEVLPTLIQLLRD---DQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVE--------DGSWRVSYMVADKFS 341 (759)
T ss_pred HHhhccHHHhhhhhc---chhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhc--------ChhHHHHHHHhhhhh
Confidence 344555555544433 34789999999999999888643 22222222222222 247888877666666
Q ss_pred HHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCC---h-hHHHHHHHHHHhcCCCCCCchH
Q 003214 442 ALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD---Q-NNFRKALHSVVSGLRDPELPVR 517 (838)
Q Consensus 442 ~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~---~-~~~~~~~~~l~~~l~~~~~~V~ 517 (838)
.++..+... ....+..+.+.. .+.+...-.|..+..=...+..+. +. + -....+++.+-....|++..||
T Consensus 342 ~L~~~~~~~-~~~~~~~~~~~~----l~~~~~~e~r~a~a~~~~~l~~~l-~~~~~~~i~~~~ilp~~~~lv~d~~~~vr 415 (759)
T KOG0211|consen 342 ELSSAVGPS-ATRTQLVPPVSN----LLKDEEWEVRYAIAKKVQKLACYL-NASCYPNIPDSSILPEVQVLVLDNALHVR 415 (759)
T ss_pred hHHHHhccc-cCcccchhhHHH----HhcchhhhhhHHhhcchHHHhhhc-CcccccccchhhhhHHHHHHHhcccchHH
Confidence 565555431 112222222222 223343444444444444443322 10 1 1235567888888888888899
Q ss_pred HHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHH--HHHHhhccc--chhhHHHHHHHHHHHHHHH
Q 003214 518 VDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLE--TIVDKFGEE--MAPYALGLCQNLAAAFWRC 593 (838)
Q Consensus 518 ~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~--~iv~~~~~~--i~p~~~~l~~~L~~~~~~~ 593 (838)
.+.+.-.............+.+.+|..+.. +++...+.....+. .......+. +.-+...+...++. +
T Consensus 416 ~a~a~~~~~~~p~~~k~~ti~~llp~~~~~----l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e----l 487 (759)
T KOG0211|consen 416 SALASVITGLSPILPKERTISELLPLLIGN----LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE----L 487 (759)
T ss_pred HHHhccccccCccCCcCcCccccChhhhhh----cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh----h
Confidence 888776666554443334444444444432 22211111111221 111111111 11122222222221 1
Q ss_pred HhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCC
Q 003214 594 MNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTIS 673 (838)
Q Consensus 594 ~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~ 673 (838)
.+ +...-.+..+++.|-.+....+ ...+. +.+.+++..-+.+......+.+..-+..+++..+ -.
T Consensus 488 ------~~---d~~wRvr~ail~~ip~la~q~~--~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~ 552 (759)
T KOG0211|consen 488 ------AE---DLLWRVRLAILEYIPQLALQLG--VEFFD---EKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SE 552 (759)
T ss_pred ------cc---chhHHHHHHHHHHHHHHHHhhh--hHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cc
Confidence 11 0123345566666666665544 12222 3344444444433334455555555555554333 11
Q ss_pred HhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHH
Q 003214 674 LEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVV 753 (838)
Q Consensus 674 ~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i 753 (838)
=....+-|.++....++..-+....+..+..++...++++ +.+.++-++..+..++.... +..+++.+..+
T Consensus 553 w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei-------~~~~Llp~~~~l~~D~vanV--R~nvak~L~~i 623 (759)
T KOG0211|consen 553 WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI-------TCEDLLPVFLDLVKDPVANV--RINVAKHLPKI 623 (759)
T ss_pred hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH-------HHHHHhHHHHHhccCCchhh--hhhHHHHHHHH
Confidence 1122233333333322222334445555554544444443 34556666666665443222 46788888888
Q ss_pred HHHccc
Q 003214 754 FQNCKG 759 (838)
Q Consensus 754 ~~~~~~ 759 (838)
...+..
T Consensus 624 ~~~L~~ 629 (759)
T KOG0211|consen 624 LKLLDE 629 (759)
T ss_pred Hhhcch
Confidence 877664
No 153
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=68.95 E-value=1.8e+02 Score=31.80 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC-------hH---HHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCC
Q 003214 4 PSLALILQGALSP-NPEERKAAEHSLNQFQYTPQ-------HL---VRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP 72 (838)
Q Consensus 4 ~~l~~~L~~~ls~-d~~~r~~Ae~~L~~~~~~p~-------f~---~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~ 72 (838)
+.+.+.|.+.-+. ..+.|+.|-.+|..+....+ |. ..+++++.+ ..+..+|.+|.=.|+...+..=..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD-SEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHhchHh
Confidence 4566666665444 45678888888887765432 22 244455543 468899999998888888765443
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH-HHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHH
Q 003214 73 HEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGEC-LKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLR 148 (838)
Q Consensus 73 ~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~-i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~ 148 (838)
+=+ .-...-..++++-.++++.+-+...++ ....+.++ |.. -+..+..++.+. ....++.++.
T Consensus 365 --------l~D-stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-P~~---~I~~i~~~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 365 --------LFD-STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-PLQ---CIVNISPLILTADEPRAVAVIKMLT 431 (516)
T ss_pred --------hhc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-chh---HHHHHhhHHhcCcchHHHHHHHHHH
Confidence 111 122333445666566666655555554 44455544 632 233333344333 3345566778
Q ss_pred HHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhh
Q 003214 149 ILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI 208 (838)
Q Consensus 149 ~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~ 208 (838)
+++++.. .+.+..+++.+.|.+.+-+++ .+..+++.++-|+-.+.
T Consensus 432 kl~e~l~------~EeL~~ll~diaP~~iqay~S---------~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 432 KLFERLS------AEELLNLLPDIAPCVIQAYDS---------TSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHhhcC------HHHHHHhhhhhhhHHHHHhcC---------chHHhhhhHHHhHHHHH
Confidence 8887652 345667777888877665542 24567888877775543
No 154
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.78 E-value=2.3e+02 Score=32.81 Aligned_cols=141 Identities=16% Similarity=0.262 Sum_probs=92.4
Q ss_pred hhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 003214 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 510 (838)
..+.|.|+-.-.++-++...+.. +.+-. +.+...+.+..+-+|.=|+--..+.+...| ..+..+.-...+++.|+
T Consensus 304 na~naVLFeaI~l~~h~D~e~~l---l~~~~-~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h~d~Ii~sLk 378 (938)
T KOG1077|consen 304 NAKNAVLFEAISLAIHLDSEPEL---LSRAV-NQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKHQDTIINSLK 378 (938)
T ss_pred hhHHHHHHHHHHHHHHcCCcHHH---HHHHH-HHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHHHHHHHHHhc
Confidence 45677777666666655443221 11211 112223445567788888877777766554 33556777888999998
Q ss_pred -CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhcccchhhHHHHHH
Q 003214 511 -DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPYALGLCQ 584 (838)
Q Consensus 511 -~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (838)
+.|..||-.|+.-|-.+|+.. ....|++.+++.+..++.. ++..=+.-+.+.|..+..=|..-+.+
T Consensus 379 terDvSirrravDLLY~mcD~~--------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLq 448 (938)
T KOG1077|consen 379 TERDVSIRRRAVDLLYAMCDVS--------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQ 448 (938)
T ss_pred cccchHHHHHHHHHHHHHhchh--------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 788899999999999999985 3667888888888876542 34444555667777666655555443
No 155
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.72 E-value=21 Score=39.37 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=76.7
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (838)
|=-.|.||..|+|.++- +..+ .+...|-++-.+.++.+|+.....+|-++.-.- .......+-..
T Consensus 565 nDDVrRAAViAlGfvc~---~D~~-------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G-----~~~a~diL~~L 629 (926)
T COG5116 565 NDDVRRAAVIALGFVCC---DDRD-------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG-----DKVATDILEAL 629 (926)
T ss_pred chHHHHHHHHheeeeEe---cCcc-------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc-----cHHHHHHHHHH
Confidence 33556677777776542 2211 122223222345678999999999998865321 23334444445
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhH
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL 560 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l 560 (838)
+.|+.--||-.|+.|+.-++-.+ .+.+.|.+..|.+++.+++.+-..+-+
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q~--n~~Lnp~v~~I~k~f~~vI~~Khe~gl 679 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQC--NPELNPNVKRIIKKFNRVIVDKHESGL 679 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhhc--CcccChhHHHHHHHHHHHHhhhhHhHH
Confidence 56776679999999999999887 488999999999999999887544433
No 156
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.02 E-value=1.2e+02 Score=32.01 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=84.0
Q ss_pred CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003214 35 PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKT 114 (838)
Q Consensus 35 p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~ 114 (838)
+++...++.++..-+.+..+.+.....+-..+...=...+-. ...+..+....=..++..+..+|..|+.+.+.+++.
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~--~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELF--LELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHH--HHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHH--HHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 356667777776542477888888888888776543210000 001111111133556666778899999999999999
Q ss_pred HHHhhCCCCCh---hHHHHHHHHhhhh-------hHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHh
Q 003214 115 IIHADYPEQWP---HLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLV 184 (838)
Q Consensus 115 Ia~~d~p~~Wp---~ll~~l~~~l~s~-------~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 184 (838)
++...-+..=. +.++.+++.+++. ....++.+|..+++. ++-|..+-. ...++.+.+++....
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-----~~~R~~f~~--~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-----KEYRQVFWK--SNGVSPLFDILRKQA 204 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-----HHHHHHHHT--HHHHHHHHHHHH---
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-----chhHHHHHh--cCcHHHHHHHHHhhc
Confidence 99876554444 7888888888763 247888999988853 222322211 334455554442111
Q ss_pred cccCCchhHHHHHHHHHHHhHHhh
Q 003214 185 QIVNPSLEVADLIKLICKIFWSSI 208 (838)
Q Consensus 185 ~~~~~~~~~~~~~~~~lki~~~~~ 208 (838)
... +....+++..++-|++-++
T Consensus 205 ~~~--~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 205 TNS--NSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp --------HHHHHHHHHHHHHHHT
T ss_pred ccC--CCCchhHHHHHHHHHHHHh
Confidence 111 1235677777888887654
No 157
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=66.89 E-value=34 Score=29.36 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=51.1
Q ss_pred HHHHHHHHhcC--CCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHH
Q 003214 725 LWSMVSSIMAD--KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSL 802 (838)
Q Consensus 725 l~~~~~~~l~~--~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~ 802 (838)
++..+...+.+ ...+..++..+.+-++.++...++.+..+.++|...+-..+..++-.......+..|.+. .++..
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~--L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKT--LDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH--CCHHH
Confidence 44555566654 233444567788889999996666677777777666555555444344445566666665 45565
Q ss_pred HHHHHHh
Q 003214 803 TLSILHK 809 (838)
Q Consensus 803 ~~~~L~~ 809 (838)
+-.++..
T Consensus 90 l~~ll~~ 96 (107)
T PF08064_consen 90 LGPLLDQ 96 (107)
T ss_pred HHHHHHH
Confidence 5555543
No 158
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.97 E-value=1.8e+02 Score=30.98 Aligned_cols=151 Identities=14% Similarity=0.197 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHH---HHHHHHh--cCChHHHHHHHH
Q 003214 36 QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRD---HILVFVA--QVPPLLRVQLGE 110 (838)
Q Consensus 36 ~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~---~ll~~l~--~~~~~i~~~~~~ 110 (838)
+.+..|+.-+ +..+.+.|.-++..+.+.+++.-+++ .++ ...++-+ .++..|. -+++.+...++.
T Consensus 76 dll~~Li~~L--~~L~fEsrKdv~~if~~llr~~~~~~-------~~p-~v~yl~~~~peil~~L~~gy~~~dial~~g~ 145 (335)
T PF08569_consen 76 DLLYLLIRNL--PKLDFESRKDVAQIFSNLLRRQIGSR-------SPP-TVDYLERHRPEILDILLRGYENPDIALNCGD 145 (335)
T ss_dssp THHHHHHHTG--GGS-HHHHHHHHHHHHHHHT--BTTB---------H-HHHHHHT--THHHHHHHHGGGSTTTHHHHHH
T ss_pred CHHHHHHHHh--hhCCCcccccHHHHHHHHHhhccCCC-------CCc-hHHHHHhCCHHHHHHHHHHhcCccccchHHH
Confidence 5555554444 34688999999999999887655542 211 1233322 2444432 245667777777
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHhhhh--hH-HHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHh
Q 003214 111 CLKTIIHADYPE---QWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLV 184 (838)
Q Consensus 111 ~i~~Ia~~d~p~---~Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 184 (838)
.+...++++--. -+++.+..+++.++.+ .+ --|+.++++++... .....+.+..-+..+...+..++
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-------k~~~a~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-------KKLVAEFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-------HHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 777766654110 1244555566777666 33 45677888877542 22334455555666666777777
Q ss_pred cccCCchhHHHHHHHHHHHhHHhh
Q 003214 185 QIVNPSLEVADLIKLICKIFWSSI 208 (838)
Q Consensus 185 ~~~~~~~~~~~~~~~~lki~~~~~ 208 (838)
.+++ .-+++..+|.+..+.
T Consensus 219 ~s~N-----YvtkrqslkLL~ell 237 (335)
T PF08569_consen 219 ESSN-----YVTKRQSLKLLGELL 237 (335)
T ss_dssp T-SS-----HHHHHHHHHHHHHHH
T ss_pred cCCC-----eEeehhhHHHHHHHH
Confidence 6553 456778888887765
No 159
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=65.63 E-value=1.2e+02 Score=30.75 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=72.5
Q ss_pred hhhHhHHHHHHHHHHHHhhc--CCcchHHHHHHHhhcccccccCC-Cc---chhhHH---HHHHHhhhccccCChhHHHH
Q 003214 430 YRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSSP-VG---HLRAKA---AWVAGQYAHINFSDQNNFRK 500 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~--~~~~~~~~~~~l~~~v~p~l~~~-~~---~lr~ra---~~~l~~~~~~~~~~~~~~~~ 500 (838)
.-..++++-++..++..+.. .+.+......|+.. ++..+.+. .. +.|+.| ..+.+-...-.-.....+..
T Consensus 111 rGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~-~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~ 189 (255)
T PF10350_consen 111 RGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDE-LLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHR 189 (255)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-HHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHH
Confidence 34677888888888888763 22333334555554 33333433 22 455555 22333333211111245677
Q ss_pred HHHHHHhcCCCCC--------CchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003214 501 ALHSVVSGLRDPE--------LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (838)
Q Consensus 501 ~~~~l~~~l~~~~--------~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (838)
.+..+++.-..+. ..-+++|...|+.++.+....+.+.||+++.+..-+.-+
T Consensus 190 ~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 190 TMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC
Confidence 7777776654332 146889999999999998777888899988876555443
No 160
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.50 E-value=3.7e+02 Score=34.09 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=42.3
Q ss_pred cCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHH
Q 003214 743 IEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSL 802 (838)
Q Consensus 743 ~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~ 802 (838)
+..|..+++.++...+..++.--+++..+-+.|+.+. ...+|..++...-.|+..||..
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchh
Confidence 4567888888887766555555667777777777663 3457888888888888877753
No 161
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.12 E-value=64 Score=35.86 Aligned_cols=102 Identities=12% Similarity=0.257 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhcCcchhhhhchhhH----HHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHH
Q 003214 317 RVTNLILQYLSNSISKNSMYNLLQPRL----DVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMD 392 (838)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l----~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ 392 (838)
+.+.+.+....++..++.. .+.+++ ..++..++-+.|+..++. ++.|..|.-|++
T Consensus 262 ~lL~~lm~m~rSLl~Np~i--~lepYlh~L~PSvlTCvVsk~l~~~p~~-------------------dnhwaLRDfAA~ 320 (576)
T KOG2549|consen 262 ELLIYLMRMVRSLLDNPNI--FLEPYLHQLVPSVLTCVVSKNLCLRPEL-------------------DNHWALRDFAAR 320 (576)
T ss_pred HHHHHHHHHHHHHhcCCcc--chhhHHHHHhhHHHHhhhhhhccCCccc-------------------cchHHHHHHHHH
Confidence 4566667777777766643 234544 455556666777765521 235789999999
Q ss_pred HHHHHHhhcccch---HHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHH
Q 003214 393 FVSELVRKRGKEN---LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (838)
Q Consensus 393 ll~~l~~~~~~~~---~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~ 445 (838)
++..+++.++... -+-+...+...+. ++ ...|...++++..+..+..
T Consensus 321 ll~~i~k~f~~~y~~L~~Rit~tl~k~l~----D~--~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 321 LLAQICKNFSTLYNNLQPRITRTLSKALL----DN--KKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CC--CCCchhhhhHHHHHHHhhh
Confidence 9999999987532 2233333334433 22 2478999999998887765
No 162
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=63.25 E-value=69 Score=27.48 Aligned_cols=78 Identities=9% Similarity=0.187 Sum_probs=55.9
Q ss_pred cccccchHHHHHHHHHHhhhhch-------hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChh
Q 003214 535 NEIRPILPQLLDEFFKLMNEVEN-------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPG 607 (838)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~~~~~-------~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~ 607 (838)
+.+.+++-.+++.+-..+++.+- ......++.+++..++.+.++.++++..|-.. . +.|
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~sa----L----~~~------ 68 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSA----L----EIP------ 68 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h----Cch------
Confidence 45667778888888888776541 12677888899988888988888888666542 2 122
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 003214 608 ALAAVGCLRAISTILESVSR 627 (838)
Q Consensus 608 ~~~~~~~l~~i~~i~~~~~~ 627 (838)
-++..++++-..++..+++
T Consensus 69 -eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 69 -ELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred -hHHHHHHHHHHHHHHhCCH
Confidence 2466788999999999864
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.60 E-value=70 Score=36.85 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=73.4
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (838)
|=-.|.||..++|.+.. +.++ +... .|-++-.+-+|.+|+.+...+|-.+.-. -....+..+-..
T Consensus 568 nDDVrRaAVialGFVl~---~dp~---~~~s----~V~lLses~N~HVRyGaA~ALGIaCAGt-----G~~eAi~lLepl 632 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLF---RDPE---QLPS----TVSLLSESYNPHVRYGAAMALGIACAGT-----GLKEAINLLEPL 632 (929)
T ss_pred chHHHHHHHHHheeeEe---cChh---hchH----HHHHHhhhcChhhhhhHHHHHhhhhcCC-----CcHHHHHHHhhh
Confidence 34567777778876543 2211 1111 1211223457899999999998876432 123344444445
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED 559 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~ 559 (838)
+.|+.--||-.|+.|+.-+.-.+ .+.+-|-+..+.+.+.+++++-..+.
T Consensus 633 ~~D~~~fVRQgAlIa~amIm~Q~--t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 633 TSDPVDFVRQGALIALAMIMIQQ--TEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred hcChHHHHHHHHHHHHHHHHHhc--ccccCchHHHHHHHHHHHhhhhhhHH
Confidence 55766668999999998887765 58888999999999999888754433
No 164
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=62.25 E-value=1.7e+02 Score=31.40 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHh------hhcCCCCCHhhhHhHHHHHHHH
Q 003214 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM------TFFSPTISLEMWSLWPLMMEAL 687 (838)
Q Consensus 614 ~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~------~~~~~~~~~~l~~l~~~l~~~~ 687 (838)
.+.-|..|+++++ |.-|..++.-+...|..|++.+.....|.++.+|++= .++...+ +.-+||.+.+.-
T Consensus 319 FL~ElEEILe~ie--p~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~i---lPiiFpaLyr~s 393 (457)
T KOG2085|consen 319 FLNELEEILEVIE--PSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVI---LPIVFPALYRNS 393 (457)
T ss_pred eHhhHHHHHHhcC--HHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhcccee---eehhhHHHHHHH
Confidence 4666778888874 5667777777888888889888888899999999742 2233333 234577776664
Q ss_pred h-hhHhhhhhhhhhhhhhhhccCccc
Q 003214 688 A-DWAIDFFPNILVPLDNYISRGTAH 712 (838)
Q Consensus 688 ~-~~~~~~l~~~~~~L~~~i~~~~~~ 712 (838)
. -|......-+..++..|+..++..
T Consensus 394 k~hWN~~i~~l~~nvlk~f~emd~~L 419 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFMEMDPKL 419 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 3 355555555666666666666554
No 165
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.26 E-value=4e+02 Score=32.99 Aligned_cols=137 Identities=16% Similarity=0.200 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHH-hhcCC--cchHHHHHHHhh
Q 003214 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK-LKQTE--PYKSELERMLVQ 463 (838)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~-l~~~~--~~~~~~~~~l~~ 463 (838)
...-+.+|..++...++-.++.+-.++ ..+.. ++...|.+.+-++|-+... +.+.. +....+..-+..
T Consensus 292 ~k~v~~fL~elS~~~P~l~~~~l~~lv-~lld~--------es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le 362 (1251)
T KOG0414|consen 292 PKIVGNFLVELSERVPKLMLRQLTLLV-DLLDS--------ESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLE 362 (1251)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHH-HhcCC--------chHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 344567888888777664443333222 23332 4788999999888866544 33211 111112221122
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
.+..-+.+-++++|.+++.+..+.....-........++..++..+.|.+..||..|+.-+..++....
T Consensus 363 ~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 363 LLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 233334577899999999999987664322335689999999999999999999999999999998753
No 166
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.80 E-value=2e+02 Score=30.38 Aligned_cols=178 Identities=10% Similarity=0.083 Sum_probs=94.2
Q ss_pred cchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHH
Q 003214 474 GHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFK 550 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ 550 (838)
+-=|-.|+--+-.+.+- .++...+ -..+..++..+++++.-||..|++.+.+.+.+.. ..+.+... ..++.|+.
T Consensus 97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~Ll~ 173 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKLLK 173 (342)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHHHH
Confidence 33345555556555541 1222111 2234455558888889999999999999998864 22222111 15666666
Q ss_pred Hhhhhchhh----HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 003214 551 LMNEVENED----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (838)
Q Consensus 551 ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~ 626 (838)
.++..+... .+.++++++..+.....-+.. +.. ...+.+++++...+ ..+...++..++.++..-.
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~--~~G-~~~L~~vl~~~~~~-------~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK--LNG-YQVLRDVLQSNNTS-------VKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh--cCC-HHHHHHHHHcCCcc-------hHHHHHHHHHHHHHHHhhh
Confidence 666433332 677788888877544332210 001 11222344443222 3456677888888888776
Q ss_pred CChHHHHHHHhhHHHHHHHHh-ccChhhHHHHHHHHHHHhhh
Q 003214 627 RLPHLFVQIEPTLLPIMRRML-TTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 627 ~~~~~~~~l~~~~~p~i~~~l-~~~~~~~~~~~l~ll~~~~~ 667 (838)
.+.++.. ...+|.....+ .....+..+.++.-...+++
T Consensus 244 s~~d~~~---~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 244 SDEDIAS---SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHH---HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5554332 23333333222 23344555666555555443
No 167
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.51 E-value=3.7e+02 Score=32.42 Aligned_cols=127 Identities=9% Similarity=-0.036 Sum_probs=72.8
Q ss_pred CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHH----HHHHHhc-CCCCCCCccC
Q 003214 670 PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWS----MVSSIMA-DKNLEDGDIE 744 (838)
Q Consensus 670 ~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~----~~~~~l~-~~~~~~~~~~ 744 (838)
..+-|...+.||.++.++.+++.-.+.-++.++.....+.++.+.. .+++.++- .|..... ....+.....
T Consensus 839 n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s----R~l~dvlP~l~~~~~~~~~~~~~~~~~~qt 914 (1014)
T KOG4524|consen 839 NLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS----RFLEDVLPWLKHLCQDSFARTILKELRIQT 914 (1014)
T ss_pred hhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3455777889999999987666667778888888888887775443 34444332 2222221 1111222234
Q ss_pred chhHHHHHHHHHcccC------cccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccCh
Q 003214 745 PAPKLIEVVFQNCKGQ------VDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNS 800 (838)
Q Consensus 745 ~~~~ll~~i~~~~~~~------~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~ 800 (838)
...++=..++.+.+.- .+..++.+...+.-.+.......+.......|+..+.|++
T Consensus 915 a~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~F~~~V~~ek 976 (1014)
T KOG4524|consen 915 AEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIARSCFLDLVPVEK 976 (1014)
T ss_pred HHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHHHHHHHHhccCC
Confidence 5667766777765531 1233444555554444433333344555667777777776
No 168
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.04 E-value=77 Score=30.13 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhh
Q 003214 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM 676 (838)
Q Consensus 613 ~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l 676 (838)
-....+..+++. + ..+-.-++.+.+++.+...++..+.+....++.++..++..++.+-+.+
T Consensus 57 lA~~g~~dll~~-~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aL 118 (183)
T PF10274_consen 57 LARQGIKDLLER-G-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEAL 118 (183)
T ss_pred HHHHHHHHHHHh-c-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 345566667666 2 2233445668889999999999999999999999999987665555443
No 169
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=58.19 E-value=1.8e+02 Score=32.63 Aligned_cols=141 Identities=13% Similarity=0.221 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh---hchhhHHHHHHHHHHhh---
Q 003214 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKF--- 571 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~---~~~~~l~~~l~~iv~~~--- 571 (838)
++-+|..+.+.+.+.+...|-.|..+|.+ +.. -..+.||+-..+. +-... ..+-.++..+..++..+
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T---DsG-L~~LlPyFv~fIa---e~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLET---DSG-LQQLLPYFVTFIA---EGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc---Ccc-HHHHHHHHHHHHh---hheeeccccccHHHHHHHHHHHHHHhcC
Confidence 34555555555555666677666555543 432 3334444433332 22211 11112333333333333
Q ss_pred -cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccC
Q 003214 572 -GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD 650 (838)
Q Consensus 572 -~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~ 650 (838)
.=.+.||..+++..+..|... .+-...|..| +.+.++....+.+..|+... +..|..+..++...+..++..+
T Consensus 278 p~i~lepYlh~L~PSvlTCvVs--k~l~~~p~~d-nhwaLRDfAA~ll~~i~k~f---~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVS--KNLCLRPELD-NHWALRDFAARLLAQICKNF---STLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhh--hhccCCcccc-chHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhcCC
Confidence 224789999999999887543 2222233222 33445655566666555543 4567778889999999888665
Q ss_pred h
Q 003214 651 G 651 (838)
Q Consensus 651 ~ 651 (838)
.
T Consensus 352 ~ 352 (576)
T KOG2549|consen 352 K 352 (576)
T ss_pred C
Confidence 4
No 170
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=57.48 E-value=1.2e+02 Score=34.57 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCCh---HHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCC
Q 003214 6 LALILQGALSPNPEERKAAEHSLNQFQY----TPQH---LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (838)
Q Consensus 6 l~~~L~~~ls~d~~~r~~Ae~~L~~~~~----~p~f---~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~ 78 (838)
|.-+|...-||+..+|+..-+-|+++.+ .|.. ...|++...+++.+..+|.++.+|++..+.
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~----------- 93 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD----------- 93 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh-----------
Confidence 4445566668999999999999887765 3543 578888888877788999999999988873
Q ss_pred CCCChhhHHHHHHHHHHHHhc
Q 003214 79 QKISQVDKDMVRDHILVFVAQ 99 (838)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~ 99 (838)
.++.++|..+--.+++++..
T Consensus 94 -Rl~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 -RLDDEERRELLPSLLKGISK 113 (501)
T ss_pred -cCCHHHHHHHHHHHHHhhcc
Confidence 38889999998999988864
No 171
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=57.25 E-value=1.7e+02 Score=27.40 Aligned_cols=47 Identities=30% Similarity=0.476 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhCCCCCh-----hHHHHHHHHhhhh---hHHHHHHHHHHHHHHc
Q 003214 108 LGECLKTIIHADYPEQWP-----HLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (838)
Q Consensus 108 ~~~~i~~Ia~~d~p~~Wp-----~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~ 154 (838)
++.+++.+....-|+.|+ +++|.+..+++|. .+..||.+|..+++.|
T Consensus 46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 366777777555567785 7999999999988 6789999999999987
No 172
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.65 E-value=1.4e+02 Score=34.51 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=75.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++...|.+.++.++. ++.-+..+ .-+..+|.- ..++.+-=+|+.|...+|- +.|++|+.+..+++.+..
T Consensus 531 kdpilR~~Gm~t~al-Ay~GTgnn---kair~lLh~----aVsD~nDDVrRaAVialGF---Vl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 531 KDPILRYGGMYTLAL-AYVGTGNN---KAIRRLLHV----AVSDVNDDVRRAAVIALGF---VLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred CchhhhhhhHHHHHH-HHhccCch---hhHHHhhcc----cccccchHHHHHHHHHhee---eEecChhhchHHHHHHhh
Confidence 366777777777764 33222221 122233321 2355666688888888876 346677766655554443
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch---hhHHHHHHHHHHhhcccchhhHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQ 584 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (838)
. -++-||..|+-||.-+|......+. +.-|-.++++... ...+-++.-|.....+...|-...+-+
T Consensus 600 s---~N~HVRyGaA~ALGIaCAGtG~~eA--------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 600 S---YNPHVRYGAAMALGIACAGTGLKEA--------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred h---cChhhhhhHHHHHhhhhcCCCcHHH--------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 3 3567999999999998877542222 2222223332111 113334444555666777776666665
Q ss_pred HHHH
Q 003214 585 NLAA 588 (838)
Q Consensus 585 ~L~~ 588 (838)
.+..
T Consensus 669 ~l~k 672 (929)
T KOG2062|consen 669 QLEK 672 (929)
T ss_pred HHHH
Confidence 5543
No 173
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.97 E-value=6e+02 Score=33.41 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCc--chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccc
Q 003214 390 SMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYK--PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 467 (838)
Q Consensus 390 a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~--~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p 467 (838)
|..++..+..+.+...--.+++...+.+.+....+...- +...-.|.+.+++.+++......-....+..+-...+..
T Consensus 804 a~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~ 883 (2067)
T KOG1822|consen 804 AVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVN 883 (2067)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhh
Confidence 444444455555544444455544444433222211000 111112333444444443222111123344444444555
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchHHHHH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLD 546 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~ 546 (838)
.+..++|.+|.++.-.+++.+... .++.....+.+..+..+.+. |+.-|..=..|+..+-.... .-.=..++..-+.
T Consensus 884 sl~~~~p~~rc~~~ea~arLaq~v-~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg-s~~s~qhl~t~v~ 961 (2067)
T KOG1822|consen 884 SLINPNPKLRCAAAEALARLAQVV-GSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG-SIGSGQHLNTSVS 961 (2067)
T ss_pred hhccCChHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc-CCCCchhcccHHH
Confidence 667789999999999999997643 23345677888888888765 44455555556665555432 1111224555667
Q ss_pred HHHHHhhhhch
Q 003214 547 EFFKLMNEVEN 557 (838)
Q Consensus 547 ~L~~ll~~~~~ 557 (838)
.++.+.++.+.
T Consensus 962 illal~~Ds~~ 972 (2067)
T KOG1822|consen 962 ILLALATDSTS 972 (2067)
T ss_pred HHHHHhhcCCC
Confidence 77777776555
No 174
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=53.84 E-value=60 Score=35.31 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccc---chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhh--cCCcchHHHHHHHhh
Q 003214 389 ASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK--QTEPYKSELERMLVQ 463 (838)
Q Consensus 389 ~a~~ll~~l~~~~~~---~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~--~~~~~~~~~~~~l~~ 463 (838)
+.++.-..+..+.+. ..-...-..+..+++.......+ +-+.++-+..++|.....+. ....+..-++.-..+
T Consensus 456 tlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad--~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~ 533 (728)
T KOG4535|consen 456 SLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASAD--KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQA 533 (728)
T ss_pred HhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHh
Q ss_pred cccccccCCCcchhhHHHHHHHhhhc---cccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAH---INFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFAL 524 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~---~~~~~~~~~~~~~~~l~~~l~~-~~~~V~~~A~~al 524 (838)
.+--.......-+|..||+++|..-+ +.+.+......+++.++..+.+ .+..||+.|+.||
T Consensus 534 l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 534 LISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred cccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhh
No 175
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=52.80 E-value=7e+02 Score=33.24 Aligned_cols=97 Identities=13% Similarity=0.269 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCCh--hhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhCC---CCC
Q 003214 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQ--VDKDMVRDHILVFV-AQVPPLLRVQLGECLKTIIHADYP---EQW 124 (838)
Q Consensus 51 ~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~--e~k~~ir~~ll~~l-~~~~~~i~~~~~~~i~~Ia~~d~p---~~W 124 (838)
+..++.+|.-.||..-.+.-...+ ++. -+|..+|- +...+ ...+..||..+..|+..|...-.. ..|
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE------L~~f~FQkefLkP-fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGW 1222 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE------LANYNFQNEFMKP-FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 1222 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh------hhchhHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 456788887777776665554311 221 13444433 22333 345678999999999988765443 579
Q ss_pred hhHHHHHHHHhhhh---hHHHHHHHHHHHHHHc
Q 003214 125 PHLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (838)
Q Consensus 125 p~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~ 154 (838)
+.++..+-....+. -+..|..++..|++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 99999888777655 3577888999988764
No 176
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.72 E-value=1.4e+02 Score=29.03 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHH---HHHHHHH---hh
Q 003214 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVF---TLETIVD---KF 571 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~---~l~~iv~---~~ 571 (838)
.-..++..+..|.+.+-+-|..|-.-+..++... .+.+.|.+|+++--|-..+...+.+.... +|..++. -.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~--g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG--GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc--ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 3556777777787777788888888888888775 58999999999999988888777665444 4444443 24
Q ss_pred cccchhhHHHHHHHHH
Q 003214 572 GEEMAPYALGLCQNLA 587 (838)
Q Consensus 572 ~~~i~p~~~~l~~~L~ 587 (838)
+..+.||..++...+-
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 6788999998886553
No 177
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.52 E-value=1.7e+02 Score=29.90 Aligned_cols=135 Identities=15% Similarity=0.244 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHh-hc---c
Q 003214 499 RKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDK-FG---E 573 (838)
Q Consensus 499 ~~~~~~l~~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~-~~---~ 573 (838)
+-.+..+++.|-| ++...|-+|..+|++ +. .-..+.||.-..+.. ++.+...+-..+.++-.++.. .+ =
T Consensus 196 q~YF~kvisal~dEs~~~~r~aAl~sLr~---ds-GlhQLvPYFi~f~~e--qit~Nl~nl~~LtTv~~m~~sLL~N~~i 269 (450)
T COG5095 196 QMYFDKVISALLDESDEQTRDAALESLRN---DS-GLHQLVPYFIHFFNE--QITKNLKNLEKLTTVVMMYSSLLKNKYI 269 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cc-cHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHhcCCce
Confidence 4444555555543 344456555555543 33 244556665443332 111222222222222222222 22 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh-cCChHHHHHHHhhHHHHHHHH
Q 003214 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV-SRLPHLFVQIEPTLLPIMRRM 646 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~-~~~~~~~~~l~~~~~p~i~~~ 646 (838)
-+.||..++++.+..++.. +.-+++|++ .... .+=+.-+.++..+ ..-+..|..+.+++...+...
T Consensus 270 FvdPY~hqlmPSilTclia--kklg~~p~d---he~~--alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKa 336 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIA--KKLGNVPDD---HEHY--ALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKA 336 (450)
T ss_pred eecHHHHHHHHHHHHHHHH--HHhcCCCcc---hhHH--HHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHH
Confidence 3679999999998876543 222333422 1221 1222333445544 234566666666666655554
No 178
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.11 E-value=2.2e+02 Score=27.18 Aligned_cols=121 Identities=17% Similarity=0.287 Sum_probs=63.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
+.|+++.||..|+.++..+++..+ +|+.. ..+.+. =...++|+...+...+.+
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk------~~L~~--------Ae~~~~-------------~~~sFtslS~tLa~~i~~ 101 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSK------PFLAQ--------AEESKG-------------PSGSFTSLSSTLASMIME 101 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccH------HHHHH--------HHhcCC-------------CCCCcccHHHHHHHHHHH
Confidence 468999999999999999999853 22222 111110 012345555554444433
Q ss_pred H---HHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC---hHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHH
Q 003214 589 A---FWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL---PHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIV 662 (838)
Q Consensus 589 ~---~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~---~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll 662 (838)
. +...++. +.+ .-....++.|++.++++..-+ ++.. ..++..+...+.+.+.+....++..+
T Consensus 102 lH~~Ll~~L~~-E~~-------~~~l~q~lK~la~Lv~~tPY~rL~~~ll----~~~v~~v~~~l~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 102 LHRGLLLALQA-EKS-------PPVLTQLLKCLAVLVQATPYHRLPPGLL----TEVVTQVRPLLRHRDPNVRVAALSCL 169 (182)
T ss_pred HHHHHHHHHhc-ccc-------cHHHHHHHHHHHHHHccCChhhcCHhHH----HHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 1 1112222 111 123347888888888876321 2222 33333333334345556666677777
Q ss_pred HHhhhc
Q 003214 663 SYMTFF 668 (838)
Q Consensus 663 ~~~~~~ 668 (838)
+.++..
T Consensus 170 ~~l~s~ 175 (182)
T PF13251_consen 170 GALLSV 175 (182)
T ss_pred HHHHcC
Confidence 766643
No 179
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=52.01 E-value=90 Score=28.19 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHH
Q 003214 474 GHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFAL 524 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al 524 (838)
.-+...++.+++.|.++. +.+.. ..+++.+++.|++++ .+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 778899999999998754 44332 348888888887655 488888875
No 180
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=51.38 E-value=11 Score=25.16 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 003214 501 ALHSVVSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 501 ~~~~l~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
.++.++.++++++..++..|+.||.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777777777889999999998874
No 181
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=50.83 E-value=3.3e+02 Score=30.31 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=53.1
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC-Ch-hHHHHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS-DQ-NNFRKALHSVV 506 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~-~~-~~~~~~~~~l~ 506 (838)
-++.|-++-.|+|.++..+.+. .+..++...+.+.|++++..=|--|+.++..|+...-. ++ .....+-..+.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~-----~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPES-----SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 4678888889999999887543 23344444566677899999999999999999864211 11 11244555555
Q ss_pred hcCCCCCC
Q 003214 507 SGLRDPEL 514 (838)
Q Consensus 507 ~~l~~~~~ 514 (838)
..|.++.+
T Consensus 175 ~~L~~~~~ 182 (441)
T PF12054_consen 175 EILENPEP 182 (441)
T ss_pred HHHcCCCC
Confidence 66664433
No 182
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=50.65 E-value=2.7e+02 Score=27.81 Aligned_cols=134 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHH----h-----cCChHHHHHHHHHHHHHHHhhCCC-
Q 003214 53 SVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFV----A-----QVPPLLRVQLGECLKTIIHADYPE- 122 (838)
Q Consensus 53 ~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l----~-----~~~~~i~~~~~~~i~~Ia~~d~p~- 122 (838)
+-|---+..|=..+..|=+. -+.++|..+.-.+ . .+..-+|...--+|+.+++.|=.+
T Consensus 93 snRVcnaL~LlQcvASHpdT------------r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV 160 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDT------------RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV 160 (293)
T ss_pred cchHHHHHHHHHHHhcCcch------------HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH
Confidence 44555555555555544332 4556666555433 2 234567877777888888877442
Q ss_pred ----CChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhH---HHHHHHHHHhcccCCchh
Q 003214 123 ----QWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFH---HLLNIFNRLVQIVNPSLE 192 (838)
Q Consensus 123 ----~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p---~l~~~~~~~~~~~~~~~~ 192 (838)
-|.+.+|..+..+.+| ....|..++..|+-+ +.+...+-+..+.++. .+.++..++.+. .
T Consensus 161 i~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld-----D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-----p 230 (293)
T KOG3036|consen 161 IRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD-----DVGLYYICQTAERFSAVALVLGKMVFQLVSM-----P 230 (293)
T ss_pred HHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc-----cccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-----C
Confidence 4888899888888877 345667777777643 2222222222222211 122222333222 2
Q ss_pred HHHHHHHHHHHhHHhh
Q 003214 193 VADLIKLICKIFWSSI 208 (838)
Q Consensus 193 ~~~~~~~~lki~~~~~ 208 (838)
+..+++-+++||-++.
T Consensus 231 s~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 231 SPRLLKHVIRCYLRLS 246 (293)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4677888899987765
No 183
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=48.12 E-value=2.3e+02 Score=33.82 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCC-CHhhhHhHHHHHHHHhhh
Q 003214 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI-SLEMWSLWPLMMEALADW 690 (838)
Q Consensus 612 ~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~-~~~l~~l~~~l~~~~~~~ 690 (838)
+-.+..++.++..+-. ++..+-.+.++|++-+++.-.+.+..-..+..+..++.-++++ +..+..++|.++.+-.+.
T Consensus 885 ~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 885 HNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred hHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 4567788888876643 3344445889999999988766666566777777666555554 556778999888874332
Q ss_pred H---hhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCC
Q 003214 691 A---IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADK 736 (838)
Q Consensus 691 ~---~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~ 736 (838)
+ ..+....+.+|.+....-|..-+. .|...+++.+.+.|+++
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~----~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLL----SFRPLVLRALIKILDDK 1007 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccc----cccHHHHHHhhhccCcH
Confidence 2 345556677777777755554443 67778888888888765
No 184
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.90 E-value=44 Score=22.53 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=20.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHH
Q 003214 92 HILVFVAQVPPLLRVQLGECLKTIIH 117 (838)
Q Consensus 92 ~ll~~l~~~~~~i~~~~~~~i~~Ia~ 117 (838)
.|+++|.+++..++...+.+++.|++
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35566678899999999999998874
No 185
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=47.90 E-value=6.7e+02 Score=31.55 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=70.4
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh----ccccccc---CC--CcchhhHHHHHHHhhhccccCChhHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ----HVFPEFS---SP--VGHLRAKAAWVAGQYAHINFSDQNNF 498 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~----~v~p~l~---~~--~~~lr~ra~~~l~~~~~~~~~~~~~~ 498 (838)
++|..|+++-.++.-+...=.+.-.+ ..++..+.. ..+--+. ++ -.-+|..+.|.++.+-+.. ++...
T Consensus 89 ~~we~rhg~~i~lrei~~~h~~~~~~-~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~--~~s~~ 165 (1549)
T KOG0392|consen 89 PQWEIRHGAAIALREILKTHGDSLSY-ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHM--DESLI 165 (1549)
T ss_pred chhhhhcCcchhhhhHHHHhcchhhH-HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhh--hhHhh
Confidence 37888888877776555432211111 112222211 1111111 11 2458999999999987754 56677
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (838)
...+..+...+..+.-.+|-.....++.++... .+.+...++.++.....-+++.
T Consensus 166 ~~~~~il~q~~~q~~w~ir~Ggll~iky~~air--~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 166 KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIR--QDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred HHHHHHHHHHHcCcchhheechHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhc
Confidence 888888888776665556667777777777632 3444445555555555555543
No 186
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=47.60 E-value=3.6e+02 Score=32.46 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhh-hhchhh---HHHHHHHHHHhh
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-EVENED---LVFTLETIVDKF 571 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~-~~~~~~---l~~~l~~iv~~~ 571 (838)
+....+-..+-..|.+++-.=|..|...+...+++.. .+...+ ...++..++.... +++..- -...|..+....
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~-~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKG-YTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccC-cchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 3455566666666777777778899888888888754 233333 3344444444332 222222 234566667777
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh
Q 003214 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG 651 (838)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~ 651 (838)
+....+|+..+.+.+...+.. .+..++..++.++..++.+.. ...+.+.+...+....
T Consensus 327 r~~~~~~~~~v~p~lld~lke-------------kk~~l~d~l~~~~d~~~ns~~---------l~~~~~~I~e~lk~kn 384 (815)
T KOG1820|consen 327 RPLFRKYAKNVFPSLLDRLKE-------------KKSELRDALLKALDAILNSTP---------LSKMSEAILEALKGKN 384 (815)
T ss_pred chhhHHHHHhhcchHHHHhhh-------------ccHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHhcCCC
Confidence 777888887777766653222 122233334444444433211 1456666666676666
Q ss_pred hhHHHHHHHHHHHhhhcCCCC---CHhhhHhHHHHHHHHhhhHhhhhhhhhhhhh
Q 003214 652 QEVFEEVLEIVSYMTFFSPTI---SLEMWSLWPLMMEALADWAIDFFPNILVPLD 703 (838)
Q Consensus 652 ~~~~~~~l~ll~~~~~~~~~~---~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~ 703 (838)
...-.++..++...++..++. .+....+.|.++...++-+.++.......+-
T Consensus 385 p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 385 PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVA 439 (815)
T ss_pred hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH
Confidence 677777777777777665422 2345667777766665444444444444443
No 187
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=47.06 E-value=4.1e+02 Score=28.81 Aligned_cols=245 Identities=10% Similarity=0.151 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCC--CcchhhHHHHH
Q 003214 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP--VGHLRAKAAWV 483 (838)
Q Consensus 406 ~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~--~~~lr~ra~~~ 483 (838)
++.+.++++.-+.+.. +..+..+-+..-.|+.++|.+-..-.=...+..+...++..+.+..+.++ +.-+..+++|+
T Consensus 37 ~~~l~~~i~rDi~~~~-~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ 115 (372)
T PF12231_consen 37 MSLLLQFIQRDISSSS-SKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWC 115 (372)
T ss_pred HHHHHHHHHHHHhccc-CCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555555444211 11111256777788888887665421111112233343444444444433 45788999999
Q ss_pred HHhhhccccCCh---hHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHhhhhc
Q 003214 484 AGQYAHINFSDQ---NNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNEVE 556 (838)
Q Consensus 484 l~~~~~~~~~~~---~~~~~~~~~l~~~l~~--~~~~V~~~A~~al~~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~ 556 (838)
++.- .|... .....-+-.++..+.+ +...+-..+..++++++.... ..+...-.++.++..++...+...
T Consensus 116 ls~Q---~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir 192 (372)
T PF12231_consen 116 LSDQ---KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIR 192 (372)
T ss_pred HHcC---CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 9762 22211 2233333344444443 345577789999999998863 222233355566666665544332
Q ss_pred hhhHHHHHHHHHHhhc--------------ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 003214 557 NEDLVFTLETIVDKFG--------------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (838)
Q Consensus 557 ~~~l~~~l~~iv~~~~--------------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~ 622 (838)
.. ...+...+...++ ....+- .+++.+.+.+.+.....+ + ...+..+...+..++
T Consensus 193 ~~-a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~-~-------~~~a~~iW~~~i~LL 261 (372)
T PF12231_consen 193 TK-AISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKD-E-------YKLAMQIWSVVILLL 261 (372)
T ss_pred HH-HHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcC-C-------cchHHHHHHHHHHHh
Confidence 21 1111111111111 111110 112222222222332211 1 123345555555555
Q ss_pred HhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhc
Q 003214 623 ESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 668 (838)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~ 668 (838)
..-.-+ -.......+.+.+.+++..+...--.++.-|..+++.
T Consensus 262 ~~~~~~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 262 GSSRLD---SWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred CCchhh---ccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 421100 1123467788888888877777778888888888873
No 188
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.48 E-value=3.8e+02 Score=28.69 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhhcc
Q 003214 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGE 573 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~----l~~~l~~iv~~~~~ 573 (838)
++.+|..+.+.+.+.+...|..| |..+-.+. .-..+.||+-..+..-...--.. +-. ++..+.+++.+=.=
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~a---L~sL~tD~-gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREA---LQSLRTDP-GLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHH---HHHhccCC-CchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCC
Confidence 45566666666555554555444 44433343 24555566555444332221110 222 33444444443334
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhc
Q 003214 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT 648 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~ 648 (838)
.+.||+.++++.+..++..- .-...++ .++..-++...-+.+..|++..+.. +..+.+++...+..++.
T Consensus 251 ~le~Ylh~Lip~vltclv~~--~l~~~~~-~~~h~~LRd~AA~ll~~i~~~f~~~---y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAK--QLCSRPP-DDNHWALRDYAARLLAQICRKFSTS---YNTLQPRITRTLLKALL 319 (343)
T ss_pred chHHhHHHHHHHHHHHhhhH--hhcCCCC-CchHHHHHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHHHHc
Confidence 57899999999888765441 1111111 1234556777778888888877543 33355666665555553
No 189
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=46.07 E-value=3.3e+02 Score=27.54 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHhh-cCCC----------hHHHHHHHHHhc---------CcChhhHHHHHHHHHHhhhhcCCCCCCC
Q 003214 17 NPEERKAAEHSLNQFQ-YTPQ----------HLVRLLQIIVDN---------NCDLSVRQVASIHFKNFIAKNWAPHEPN 76 (838)
Q Consensus 17 d~~~r~~Ae~~L~~~~-~~p~----------f~~~Ll~i~~~~---------~~~~~iR~~Aai~lKn~i~~~W~~~~~~ 76 (838)
+++.|..|=..|..-. ..|+ -...|++-+.+. +...+-|--.++.|=..|..|=..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet---- 83 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET---- 83 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT----
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH----
Confidence 5667877777666433 2344 344444444321 012345666666666677665443
Q ss_pred CCCCCChhhHHHHHHHHHHHH----hcC-----ChHHHHHHHHHHHHHHHhhCCC-----CChhHHHHHHHHhhhh---h
Q 003214 77 EQQKISQVDKDMVRDHILVFV----AQV-----PPLLRVQLGECLKTIIHADYPE-----QWPHLLDWVKHNLQDQ---Q 139 (838)
Q Consensus 77 ~~~~l~~e~k~~ir~~ll~~l----~~~-----~~~i~~~~~~~i~~Ia~~d~p~-----~Wp~ll~~l~~~l~s~---~ 139 (838)
-+.+++.++.-.| ... -..+|-..--+|+.+++.|=++ -..|++|-.+..+..| .
T Consensus 84 --------r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselS 155 (262)
T PF04078_consen 84 --------RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELS 155 (262)
T ss_dssp --------HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHH
T ss_pred --------HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHH
Confidence 3445555555333 221 2457777777888888876553 2457777777777776 2
Q ss_pred HHHHHHHHHHHHHHcccCCccCcchH---HHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhh
Q 003214 140 VYGALFVLRILSRKYEFKSDEERTPV---YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY 209 (838)
Q Consensus 140 ~~~~L~~L~~i~~~~~~~~~~~~~~~---~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~ 209 (838)
--.|..++.+|+-+- .+...+ .+-+..+...+..+..++..+ .+..+++.+++||.++..
T Consensus 156 KtvAtfIlqKIL~dd-----~GL~yiC~t~eRf~av~~vL~~mV~~l~~~-----pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 156 KTVATFILQKILLDD-----VGLNYICQTAERFFAVAMVLNKMVEQLVKQ-----PSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHHHHHHSH-----HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcch-----hHHHHHhcCHHHHHHHHHHHHHHHHHHccC-----CChhHHHHHHHHHHHHcc
Confidence 345666777776431 111111 011112222333333333332 357889999999998864
No 190
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=44.68 E-value=4.4e+02 Score=28.54 Aligned_cols=189 Identities=11% Similarity=0.120 Sum_probs=89.7
Q ss_pred CcchhhHHHHHHHhhhcc-----ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHH
Q 003214 473 VGHLRAKAAWVAGQYAHI-----NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLD 546 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~ 546 (838)
...+...|+.++|.+-.. .+ +.+...-++...+..+.++..+ +..+..++..+. ..+ ....+....+..+-
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l-~~d~~~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls-~Q~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTL-SDDFASFIIDHSIESLQNPNSP-KSICTHYLWCLS-DQKFSPKIMTSDRVERLL 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhC-ChHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-cCCCCCcccchhhHHHHH
Confidence 346778888888887421 01 2234455888888888776543 333333333332 222 23333443333333
Q ss_pred HHHHHhhh-hchh----hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHH
Q 003214 547 EFFKLMNE-VENE----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621 (838)
Q Consensus 547 ~L~~ll~~-~~~~----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i 621 (838)
..+.-+.+ .... +.+.++..++..+.+.+...+..=++.+... .... .. ..+..+......+
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~---l~~~-~k---------~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPD---LLSS-AK---------DIRTKAISLLLEA 202 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhc-ch---------HHHHHHHHHHHHH
Confidence 33333332 3322 2455666677766665554443333333321 1111 11 1122344444444
Q ss_pred HHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC--CCCCHhhhHhHHHH
Q 003214 622 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS--PTISLEMWSLWPLM 683 (838)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~--~~~~~~l~~l~~~l 683 (838)
...++.++.. ...+...+...+.++ .+.+...+-+..++... ....|.+|..+-.+
T Consensus 203 ~~~l~~~~~~----s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~L 260 (372)
T PF12231_consen 203 KKCLGPNKEL----SKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILL 260 (372)
T ss_pred HHHhChhHHH----HHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHH
Confidence 4455543322 133333333333222 67777777777777652 23445566554433
No 191
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=43.86 E-value=48 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 003214 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHA 118 (838)
Q Consensus 84 e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~ 118 (838)
.+..++|+.+++.|...++.-|.++..+|+.+.+.
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 46789999999999887788888888998888754
No 192
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.78 E-value=80 Score=34.64 Aligned_cols=77 Identities=19% Similarity=0.097 Sum_probs=51.8
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
.+...+.+++-++|... ..+ .+. +.+.++++++.+|+.|+.++|.+.... ... .+..
T Consensus 129 ~~p~vR~aal~al~~r~-----~~~----~~~-----L~~~L~d~d~~Vra~A~raLG~l~~~~-----a~~----~L~~ 185 (410)
T TIGR02270 129 SEPPGRAIGLAALGAHR-----HDP----GPA-----LEAALTHEDALVRAAALRALGELPRRL-----SES----TLRL 185 (410)
T ss_pred CChHHHHHHHHHHHhhc-----cCh----HHH-----HHHHhcCCCHHHHHHHHHHHHhhcccc-----chH----HHHH
Confidence 36678888887766511 111 112 333456899999999999999976421 122 2345
Q ss_pred cCCCCCCchHHHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSF 527 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~ 527 (838)
.+.|.++.||..|+.++..+
T Consensus 186 al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 186 YLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHcCCCHHHHHHHHHHHHHc
Confidence 58899999999999999654
No 193
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=43.14 E-value=2.2e+02 Score=26.31 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch----h---hHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 516 VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN----E---DLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 516 V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~----~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
|-..+..|+..++-..+ ...++|..-.+++--..-+.+.+. + +....+..+.++++.-++||+.-++...+.
T Consensus 37 vE~~v~~~~~~lV~KLn-E~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLN-EATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHcc-cchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777776664 788899888877765542322111 1 256788888899999999999999988886
Q ss_pred HH
Q 003214 589 AF 590 (838)
Q Consensus 589 ~~ 590 (838)
.+
T Consensus 116 ~L 117 (153)
T PF08146_consen 116 LL 117 (153)
T ss_pred HH
Confidence 43
No 194
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=42.05 E-value=1.5e+02 Score=27.71 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhh
Q 003214 720 DYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK 781 (838)
Q Consensus 720 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~ 781 (838)
-|...++..+.+.+.++..... ...+...+..|+...+..--++++.++...+..+.....
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~-h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSH-HTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH
Confidence 3556666666677766654322 235677777888777766789999999999888876543
No 195
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=41.89 E-value=6.4e+02 Score=29.65 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHH
Q 003214 606 PGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMME 685 (838)
Q Consensus 606 ~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~ 685 (838)
+++..+-|++..++++...+.+.+..-.-++..+++.+.-.++.....+...++++++.+- -.=+....+.+++...++
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~e-eDfkd~~ill~aye~t~n 506 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE-EDFKDNGILLEAYENTHN 506 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHH-HhcccchHHHHHHHHHHH
Confidence 3456677999999999987766666556667778887777777677777889999988872 221233346788999999
Q ss_pred HHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccch
Q 003214 686 ALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV 765 (838)
Q Consensus 686 ~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l 765 (838)
++.+......-+....+..|+... ++- +...+.+-.+.+++|.-.+.-+ .-..-.+++.++..++.++.|+-
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~--q~h----~k~sahVp~tmekLLsLSn~fe--iD~LS~vMe~fVe~fseELspfa 578 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNE--QSH----EKFSAHVPETMEKLLSLSNTFE--IDPLSMVMESFVEYFSEELSPFA 578 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhch--hhh----HHHHhhhhHHHHHHHHhccccc--chHHHHHHHHHHHHhHHhhchhH
Confidence 987633333333444566666654 221 2344445455556654222111 12466788999999999898988
Q ss_pred HHHHHHHHH
Q 003214 766 EPYLRITVE 774 (838)
Q Consensus 766 ~~il~~~l~ 774 (838)
+.+.+.+.+
T Consensus 579 ~eLa~~Lv~ 587 (970)
T COG5656 579 PELAGSLVR 587 (970)
T ss_pred HHHHHHHHH
Confidence 888777766
No 196
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=41.19 E-value=2.5e+02 Score=32.55 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhh-HhHHHHHHHH-hhh
Q 003214 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW-SLWPLMMEAL-ADW 690 (838)
Q Consensus 613 ~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~-~l~~~l~~~~-~~~ 690 (838)
-+++-+..|.+-+.. + .+.+.++|++..+++.......+.+++++.++....+ -+.+. .++|++.++. ...
T Consensus 369 ~i~e~mdlL~~Kt~~--e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 369 FILENMDLLKEKTPP--E---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred hHHhhHHHHHhhCCh--H---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhccc
Confidence 467777777776532 2 2458899999999988888888899988888875443 12232 4667666652 222
Q ss_pred Hhhhhhhhhhhhhhhh
Q 003214 691 AIDFFPNILVPLDNYI 706 (838)
Q Consensus 691 ~~~~l~~~~~~L~~~i 706 (838)
......+++.++..++
T Consensus 442 ~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLI 457 (700)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3334444555554444
No 197
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=41.00 E-value=77 Score=30.45 Aligned_cols=65 Identities=26% Similarity=0.217 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc----CC-ChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQY----TP-QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWA 71 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~----~p-~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~ 71 (838)
-+.++|+-++++|..+|..|=+.+...-+ +| ...++|..+.++ .+..+|..|.-.+|..-.||=+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts--~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS--PNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC--CChHHHHHHHHHHHHHHHHhHH
Confidence 46788899999999999999999987765 67 367788777765 4778999999999888776643
No 198
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.77 E-value=4.6e+02 Score=33.65 Aligned_cols=150 Identities=14% Similarity=0.184 Sum_probs=93.9
Q ss_pred CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003214 34 TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (838)
Q Consensus 34 ~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~ 113 (838)
+|+|+..+.... ..+..-.+|..+.-+++-.|=.+=- ...+..|.-|+..+...+.+.+..+|...+.+++
T Consensus 1524 ~~e~l~~l~~~~-~~~~tw~vr~avl~fl~~~vy~n~F--------v~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Ls 1594 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLT-ADSSTWRVRSAVLKFLQTVVYSNIF--------VSQELRRDDIRKLLESLLNDDQIEVREEAAKCLS 1594 (1710)
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 456777776633 3345667887766666655533322 2467789999999999999998999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhhh-----hHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccC
Q 003214 114 TIIHADYPEQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVN 188 (838)
Q Consensus 114 ~Ia~~d~p~~Wp~ll~~l~~~l~s~-----~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 188 (838)
-+.+--+-.-=++--.......++. ..|+|...|.+++--+.| .++..+|..+....+...+.
T Consensus 1595 gl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy-----------~vP~wip~~L~~Ls~fa~e~- 1662 (1710)
T KOG1851|consen 1595 GLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY-----------VVPLWIPKPLMNLSSFARES- 1662 (1710)
T ss_pred HHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc-----------cchhhhHHHHHHHHhhcCCc-
Confidence 9988655332232222222222222 569999999999976543 44556777666655543221
Q ss_pred CchhHHHHHHHHHHHhHH
Q 003214 189 PSLEVADLIKLICKIFWS 206 (838)
Q Consensus 189 ~~~~~~~~~~~~lki~~~ 206 (838)
....+..+-++.-|++
T Consensus 1663 --~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1663 --AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred --hHHHHHHHHHHHHHHH
Confidence 2233444445555554
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.07 E-value=88 Score=37.67 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=61.3
Q ss_pred hhhHhHHHHHHHHHHHHhhcCC--cchHHHHHHHhhcccccccC-CCcchhhHHHHHHHhh-hccccCCh---hHHHHHH
Q 003214 430 YRQKDGALLAIGALCDKLKQTE--PYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQY-AHINFSDQ---NNFRKAL 502 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~--~~~~~~~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~-~~~~~~~~---~~~~~~~ 502 (838)
...|--+-+.+..+.....-.. =+..++..+ -+..+++ ++|.+|-=+|.|+|+. .++. .. -......
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~i----Cle~lnd~~~pLLrQW~~icLG~LW~d~~--~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGI----CLEHLNDDPEPLLRQWLCICLGRLWEDYD--EARWSGRRDNAH 644 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHH----HHHHhcCCccHHHHHHHHHHHHHHhhhcc--hhhhccccccHH
Confidence 3555556667777776643211 011122222 2233455 4799999999999996 3321 11 1234556
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 503 HSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 503 ~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+.+...|.|+.+-||.+|+.||.+|+...
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 77778889988889999999999999963
No 200
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.66 E-value=1.9e+02 Score=33.46 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++-+.|.-++.++..+.+...+..+ ++-+-+...+..-+.+-.|.+|..|..++++|-+-. .+++. .+...+..
T Consensus 97 kdk~VRfrvlqila~l~d~~~eidd---~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee~--~v~n~l~~ 170 (892)
T KOG2025|consen 97 KDKKVRFRVLQILALLSDENAEIDD---DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEEC--PVVNLLKD 170 (892)
T ss_pred cchhHHHHHHHHHHHHhccccccCH---HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCcc--cHHHHHHH
Confidence 3567788888888888774333222 222223333433456778999999999999997522 33322 22333333
Q ss_pred cC-CCCCCchHHHHHHH
Q 003214 508 GL-RDPELPVRVDSVFA 523 (838)
Q Consensus 508 ~l-~~~~~~V~~~A~~a 523 (838)
.+ +||+.-||-+|...
T Consensus 171 liqnDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 171 LIQNDPSDEVRRAALSN 187 (892)
T ss_pred HHhcCCcHHHHHHHHHh
Confidence 33 36666677766543
No 201
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=39.64 E-value=4.1e+02 Score=32.06 Aligned_cols=139 Identities=10% Similarity=0.163 Sum_probs=95.0
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (838)
|....--+...++.++..+... +...... ..+.++.-+....+.+|..+.-++-.|+.. ..+..+.+.++..
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~--~~~~~~~-v~p~lld~lkekk~~l~d~l~~~~d~~~ns-----~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPL--FRKYAKN-VFPSLLDRLKEKKSELRDALLKALDAILNS-----TPLSKMSEAILEA 379 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchh--hHHHHHh-hcchHHHHhhhccHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHH
Confidence 5666666777888888887653 1111111 112233334455788888888888777652 2367888999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccc
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEM 575 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i 575 (838)
+.+.++.++......+.+.+.........+.-+..++..+....++.+.+- ...++..++..+|+.+
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999998888988888764445667778888888888887765543 4566677777666643
No 202
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.33 E-value=1.1e+02 Score=32.47 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=51.2
Q ss_pred HHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChh------HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 457 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN------NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 457 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
++.|+. ..-.++.+++-+.|+.++.++|.+-.-. .+.+ .-+..+..++..|.|++..+|..|-+.++-|+.+
T Consensus 207 ~d~ff~-~~~~Ll~s~NYvtkrqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 207 YDRFFQ-KYNKLLESSNYVTKRQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHH-HHHHHCT-SSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHH-HHHHHccCCCeEeehhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 344444 3344667888899999999999984210 0111 1256678899999999999999999999999998
Q ss_pred cccc
Q 003214 531 CRDL 534 (838)
Q Consensus 531 ~~~~ 534 (838)
.+.+
T Consensus 285 p~K~ 288 (335)
T PF08569_consen 285 PNKP 288 (335)
T ss_dssp SS-B
T ss_pred CCCC
Confidence 7533
No 203
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.74 E-value=1.5e+02 Score=31.21 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=82.4
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhcc-ccCChhHHHHHHHHHHh
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI-NFSDQNNFRKALHSVVS 507 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~-~~~~~~~~~~~~~~l~~ 507 (838)
+...++-|..++|.++-.-...+ ...+-++-+...+..+..++++.++..|-..++..+.- .+.-+-.-..-++.+++
T Consensus 221 d~dvqyycttaisnIaVd~~~Rk-~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 221 DLDVQYYCTTAISNIAVDRRARK-ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred ChhHHHHHHHHhhhhhhhHHHHH-HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHH
Confidence 66777888888888875432111 11111222222233334578899999999999888642 12122223445678889
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHhhhhchhh----HHHHHHHHHHhhcc
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENED----LVFTLETIVDKFGE 573 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~----l~~~l~~iv~~~~~ 573 (838)
.++++..+.-.+.+.+++++.-..- .+.+ .. ...+.-|..++.-.++|+ ...+|..+...+..
T Consensus 300 Llqs~~~plilasVaCIrnisihpl-Ne~l--I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISIHPL-NEVL--IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred HHhCcchhHHHHHHHHHhhcccccC-cccc--eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 9999988888899999988755432 1111 11 113333556776666664 45666666654443
No 204
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.72 E-value=7.3e+02 Score=29.38 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHH
Q 003214 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG 581 (838)
Q Consensus 502 ~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~ 581 (838)
+.-++..|.+++..|...+-..+...+.... + +.++..|+...-...+..++.+|..+ + .|+...
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~--~------~~l~~~l~~y~~~t~s~~~~~il~~~----~---~P~~K~ 70 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDR--E------PWLVNGLVDYYLSTNSQRALEILVGV----Q---EPHDKH 70 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccc--h------HHHHHHHHHHHhhcCcHHHHHHHHhc----C---CccHHH
Confidence 4456677777777777777777777766542 1 14566666665444444455544433 2 266666
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh-hhHHHHHHH
Q 003214 582 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLE 660 (838)
Q Consensus 582 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~-~~~~~~~l~ 660 (838)
++..|-..|.+ + -.+..++..++.+++. +-+..+.-....+++-+-.|+..|. .-.+..|+-
T Consensus 71 ~~~~l~~~~~~--------~-------~~Rl~~L~Ll~~~v~~--qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 71 LFDKLNDYFVK--------P-------SYRLQALTLLGHFVRS--QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHHHHHcC--------c-------hhHHHHHHHHHHHHhc--CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 66666543221 1 1244556666666664 2334444455677777778876654 345566666
Q ss_pred HHHHhhhcCCCCCHhhhHhHHHHHHH
Q 003214 661 IVSYMTFFSPTISLEMWSLWPLMMEA 686 (838)
Q Consensus 661 ll~~~~~~~~~~~~~l~~l~~~l~~~ 686 (838)
++..++ |.++..+-..+|.++.+
T Consensus 134 ~LimlL---P~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 134 VLIMLL---PHIPSSLGPHLPDLFNI 156 (668)
T ss_pred HHHHHh---ccccchhhHHHHHHHHH
Confidence 666666 44443333344444333
No 205
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.04 E-value=3.4e+02 Score=30.52 Aligned_cols=139 Identities=12% Similarity=0.135 Sum_probs=75.7
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccc-ccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPE-FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~-l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
+...|.+..++++. ++.-+... ..+. .+++. .++.+-=+|+.|...+|-.+ ++++..+. ..++
T Consensus 529 ds~lRy~G~fs~al-Ay~GTgn~-------~vv~-~lLh~avsD~nDDVrRAAViAlGfvc---~~D~~~lv----~tve 592 (926)
T COG5116 529 DSILRYNGVFSLAL-AYVGTGNL-------GVVS-TLLHYAVSDGNDDVRRAAVIALGFVC---CDDRDLLV----GTVE 592 (926)
T ss_pred hHHhhhccHHHHHH-HHhcCCcc-------hhHh-hhheeecccCchHHHHHHHHheeeeE---ecCcchhh----HHHH
Confidence 45666666666653 22222211 1122 22332 45566678888888887643 44654444 4444
Q ss_pred cCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 003214 508 GLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNL 586 (838)
Q Consensus 508 ~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L 586 (838)
.|.+ -+..||...+.||.-+|..... .. .-.+++.|..=-++.--...+-++.-|.....+++.|-...+..++
T Consensus 593 lLs~shN~hVR~g~AvaLGiacag~G~-~~----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f 667 (926)
T COG5116 593 LLSESHNFHVRAGVAVALGIACAGTGD-KV----ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF 667 (926)
T ss_pred HhhhccchhhhhhhHHHhhhhhcCCcc-HH----HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence 5544 3566999999999998887541 11 1223332222111111122444555666677888888777777666
Q ss_pred HH
Q 003214 587 AA 588 (838)
Q Consensus 587 ~~ 588 (838)
-.
T Consensus 668 ~~ 669 (926)
T COG5116 668 NR 669 (926)
T ss_pred HH
Confidence 54
No 206
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.00 E-value=64 Score=22.79 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 003214 85 DKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHAD 119 (838)
Q Consensus 85 ~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d 119 (838)
+..++|+.+++.|...+.. |.++..+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999999876665 888888888887543
No 207
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=5.7e+02 Score=30.53 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=40.7
Q ss_pred ccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcc-ChHHHHHHHHhc
Q 003214 758 KGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYY-NSSLTLSILHKL 810 (838)
Q Consensus 758 ~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~L~~~ 810 (838)
|+-++.+...++..+++-+.+.-++.++-.++.++.|++++ ++....++|...
T Consensus 546 pel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~ 599 (1051)
T KOG0168|consen 546 PELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNT 599 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcc
Confidence 33355667777777777777778899999999999999975 677777777765
No 208
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=37.41 E-value=83 Score=24.83 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=31.7
Q ss_pred hHhHHHHHHHHHHHHhhcCCcchH--HHHHHHhhcccccccCCCcchhhHHHHHHHhhhc
Q 003214 432 QKDGALLAIGALCDKLKQTEPYKS--ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH 489 (838)
Q Consensus 432 ~~ea~l~~lg~i~~~l~~~~~~~~--~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~ 489 (838)
+.-++++|+|.++..-... .+.+ ++.+.+.+. .-+++..-+|+.|++++|-++.
T Consensus 3 ~lKaaLWaighIgss~~G~-~lL~~~~iv~~iv~~---a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI-QLLDESDIVEDIVKI---AENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHH-HHHhhcCHHHHHHHH---HHhCCccchHHHHHHHHHHHhC
Confidence 5678999999887642110 0000 111111111 1135677899999999999876
No 209
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.12 E-value=7.7e+02 Score=29.19 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+...+..+-.++.++...+|-+|.++|.......
T Consensus 280 l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 280 LAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred cchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 3445555556666777778888888888876653
No 210
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=36.98 E-value=3.6e+02 Score=27.49 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 003214 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (838)
Q Consensus 456 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~ 535 (838)
++..++..+....+++..-+++.-+-.+-..| | |+.-.+++..++..|.+...-+|......|+.++...+..
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f----~--P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~- 222 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAF----F--PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR- 222 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----C--chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-
Confidence 45566665544444444445554444333332 1 2234667777888887766679999999999999886522
Q ss_pred ccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcc
Q 003214 536 EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 573 (838)
Q Consensus 536 ~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~ 573 (838)
+|+.++++.-+++++++.--.+.+.+++.++..-+.
T Consensus 223 --~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 223 --SPHGADLISPLLRLLQTDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred --CCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhccc
Confidence 568889999999999876666788888888876654
No 211
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=36.31 E-value=32 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHH
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFA 523 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~a 523 (838)
..+...+...+.|+++.||.+|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5788888899999999999988765
No 212
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=8e+02 Score=29.13 Aligned_cols=239 Identities=16% Similarity=0.275 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
.-|+.|..-|+.++++|...+...=+..+.+.++. +...-|+.=+++-.+..-+... +
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~---------D~~D~E~ik~~LdTl~il~~~d-d------------ 95 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQR---------DYMDPEIIKYALDTLLILTSHD-D------------ 95 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhh---------ccCCHHHHHHHHHHHHHHHhcC-c------------
Confidence 34778888999999998765543333333345543 3344444444444444332221 1
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHH
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQ 543 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ 543 (838)
.|+..++..-.-.-..|+.-+|. +++ ..+..++..+..-|..||.+|+.-|..++.... ......-..|.
T Consensus 96 -~~~v~dds~qsdd~g~~iae~fi----k~q----d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~ 166 (970)
T KOG0946|consen 96 -SPEVMDDSTQSDDLGLWIAEQFI----KNQ----DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPM 166 (970)
T ss_pred -chhhcccchhhhHHHHHHHHHHH----cCc----hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCch
Confidence 11111111122233455554443 233 346667777777788999999999999998764 12222234567
Q ss_pred HHHHHHHHhhhhch---hhHHHHHHHHHHhhcccchh--hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHH
Q 003214 544 LLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 618 (838)
Q Consensus 544 il~~L~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i 618 (838)
-+..++.++.+.-. .+....|..++...+. |.. -...+...|. .++++.++ .+..+...-|+-.+
T Consensus 167 gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~-IQKlVAFENaFerLf----sIIeeEGg-----~dGgIVveDCL~ll 236 (970)
T KOG0946|consen 167 GISKLMDLLRDSREPIRNEAILLLSELVKDNSS-IQKLVAFENAFERLF----SIIEEEGG-----LDGGIVVEDCLILL 236 (970)
T ss_pred hHHHHHHHHhhhhhhhchhHHHHHHHHHccCch-HHHHHHHHHHHHHHH----HHHHhcCC-----CCCcchHHHHHHHH
Confidence 77777777765321 1234445555443221 111 0112222333 24443221 12345555566666
Q ss_pred HHHHHhhcCChHHHHHHHhhHHHHHHHHhcc----Ch---------hhHHHHHHHHHHHhh
Q 003214 619 STILESVSRLPHLFVQIEPTLLPIMRRMLTT----DG---------QEVFEEVLEIVSYMT 666 (838)
Q Consensus 619 ~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~----~~---------~~~~~~~l~ll~~~~ 666 (838)
..+++.=..+...|. ++..+|-+.+++.. ++ .--+-.+++++..++
T Consensus 237 ~NLLK~N~SNQ~~Fr--E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lV 295 (970)
T KOG0946|consen 237 NNLLKNNISNQNFFR--EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLV 295 (970)
T ss_pred HHHHhhCcchhhHHh--ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhc
Confidence 666665555556653 57778888876643 11 123556777777777
No 213
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.82 E-value=1e+02 Score=26.96 Aligned_cols=75 Identities=12% Similarity=0.249 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003214 37 HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTII 116 (838)
Q Consensus 37 f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia 116 (838)
-+..|.+++...+ |..+-..|.==+-.+|+.+=... .-=++-..|..++++|.++++.||.+.-.|+.++.
T Consensus 44 llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr--------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGR--------NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGH--------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHH--------HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4678888885433 66666667777777777763321 11256678999999999999999999999999998
Q ss_pred HhhC
Q 003214 117 HADY 120 (838)
Q Consensus 117 ~~d~ 120 (838)
.+.|
T Consensus 115 ~~~w 118 (119)
T PF11698_consen 115 VNNW 118 (119)
T ss_dssp HHS-
T ss_pred HhcC
Confidence 8754
No 214
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.22 E-value=1.7e+02 Score=32.99 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=49.2
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH-HHHHHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-FRKALHSVV 506 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~-~~~~~~~l~ 506 (838)
++-+.|.-++.++..+++.+.+.. +.+-+.|...+..-+-+-.+.+|..|..++++|-+... +++. ...++..++
T Consensus 103 kdk~VR~r~lqila~~~d~v~eID---e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-neen~~~n~l~~~v 178 (885)
T COG5218 103 KDKKVRKRSLQILALLSDVVREID---EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-NEENRIVNLLKDIV 178 (885)
T ss_pred cchhHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHH
Confidence 356778888888888887765422 12222222222222335679999999999999987543 3432 333333333
Q ss_pred hcCCCCCCchHHHH
Q 003214 507 SGLRDPELPVRVDS 520 (838)
Q Consensus 507 ~~l~~~~~~V~~~A 520 (838)
+ +||+.-||-.|
T Consensus 179 q--nDPS~EVRr~a 190 (885)
T COG5218 179 Q--NDPSDEVRRLA 190 (885)
T ss_pred h--cCcHHHHHHHH
Confidence 2 24444455444
No 215
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=33.76 E-value=2.1e+02 Score=23.38 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHHHHHhhCC---CCChhHHHHHHHHhhhh---hHHHHHHHHH
Q 003214 99 QVPPLLRVQLGECLKTIIHADYP---EQWPHLLDWVKHNLQDQ---QVYGALFVLR 148 (838)
Q Consensus 99 ~~~~~i~~~~~~~i~~Ia~~d~p---~~Wp~ll~~l~~~l~s~---~~~~~L~~L~ 148 (838)
.++..+|..+-.|+..+...-.. ..|+.++..+-....++ -+..|..++.
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 46788999999999999876544 46999999888877755 2466666654
No 216
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.64 E-value=8.1e+02 Score=28.42 Aligned_cols=57 Identities=23% Similarity=0.144 Sum_probs=46.4
Q ss_pred CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
..=+|..|..-++..+. ..|......+..++..++|+...||+.|..||..+.....
T Consensus 386 f~EVR~AAV~Sl~~La~---ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLAT---SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA 442 (823)
T ss_pred HHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence 34578888888877764 2456678899999999999999999999999999988743
No 217
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=32.98 E-value=57 Score=20.17 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.8
Q ss_pred chhhHHHHHHHhhh
Q 003214 475 HLRAKAAWVAGQYA 488 (838)
Q Consensus 475 ~lr~ra~~~l~~~~ 488 (838)
.+|.+|.+.+|++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57999999999874
No 218
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=32.94 E-value=84 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=43.1
Q ss_pred cCCCcchhhHHHHHHHhhhccccCCh-----hHHHHHH-HHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 470 SSPVGHLRAKAAWVAGQYAHINFSDQ-----NNFRKAL-HSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~-----~~~~~~~-~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
.++.+-+|..+.|++-... |.+. +....+. +.+....+|++.+|+.++-.-++++..++.
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~---f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLM---FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred cCCCchHHHHHHHHHHHHH---hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 4567789999999996542 3222 2233333 345566689999999999999999988864
No 219
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.91 E-value=1.2e+03 Score=29.99 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHH
Q 003214 723 QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSL 802 (838)
Q Consensus 723 ~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~ 802 (838)
+.+--++.+++... ......|..+-..++..++..+.+.+..++...+..-.. ........+-.++..+-.+.|+.
T Consensus 181 e~L~~ll~~lv~~~---~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~l 256 (1266)
T KOG1525|consen 181 ELLDVLLENLVKPG---RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQL 256 (1266)
T ss_pred HHHHHHHHHhccCC---CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHHH
Confidence 33334556666532 122356889999999999888777777776666443322 34445666777777776677777
Q ss_pred HHHHHHh
Q 003214 803 TLSILHK 809 (838)
Q Consensus 803 ~~~~L~~ 809 (838)
+..++..
T Consensus 257 l~~vip~ 263 (1266)
T KOG1525|consen 257 LLAVIPQ 263 (1266)
T ss_pred HHHHHHH
Confidence 7666554
No 220
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=32.76 E-value=80 Score=27.79 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 484 AGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+...++..+.++..+..+...+.+.|++.++.|+.-|-..|+.+|...
T Consensus 22 ~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 22 YEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 334444445566678999999999999999899999999999999885
No 221
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.44 E-value=27 Score=21.21 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=10.5
Q ss_pred hhhHHHHHHHhhhc
Q 003214 476 LRAKAAWVAGQYAH 489 (838)
Q Consensus 476 lr~ra~~~l~~~~~ 489 (838)
+|..|.|.+|++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 58888999988764
No 222
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=31.92 E-value=78 Score=30.97 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=63.8
Q ss_pred cchhhHhHH-HHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHH
Q 003214 428 KPYRQKDGA-LLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 506 (838)
Q Consensus 428 ~~~~~~ea~-l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~ 506 (838)
++|-..|.. -.++|.+...- +.....+..| ..+++++.|+.++.++-.+..- .....++..+.
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~---~~~~~~~~~W--------~~s~~~w~rR~~~v~~~~~~~~-----~~~~~~l~~~~ 161 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH---PEALELLEKW--------AKSDNEWVRRAAIVMLLRYIRK-----EDFDELLEIIE 161 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH---GGHHHHHHHH--------HHCSSHHHHHHHHHCTTTHGGG-----CHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHhh---HHHHHHHHHH--------HhCCcHHHHHHHHHHHHHHHHh-----cCHHHHHHHHH
Confidence 589999888 55555543221 1122233343 3568899888887766554331 45678888888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 507 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
..+.|++.-||.+.+.+|+.+.... ++...+++..
T Consensus 162 ~~~~d~~~~vq~ai~w~L~~~~~~~--~~~v~~~l~~ 196 (213)
T PF08713_consen 162 ALLKDEEYYVQKAIGWALREIGKKD--PDEVLEFLQK 196 (213)
T ss_dssp HCTTGS-HHHHHHHHHHHHHHCTT---HHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhC--HHHHHHHHHH
Confidence 8999999899999999999987664 4555555444
No 223
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.72 E-value=5e+02 Score=33.26 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHH
Q 003214 102 PLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLN 178 (838)
Q Consensus 102 ~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~ 178 (838)
..+-..++.+++.++..+ +++|+.+..+++....++ ..+.++.....+.++.. + .....+++..|.+.+
T Consensus 1518 ~~v~~~li~~i~~~~~a~-~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lg----e---~~~~lL~q~iPfLaE 1589 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVAD-KDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLG----E---NVIVLLPQSIPFLAE 1589 (1621)
T ss_pred hHHHHHHHHHHHhhccCC-hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----c---hhHHhhhhhhHHHHH
Confidence 446667777777777666 344999999999988877 35778888888887652 2 334566777777776
Q ss_pred HHH
Q 003214 179 IFN 181 (838)
Q Consensus 179 ~~~ 181 (838)
++.
T Consensus 1590 L~E 1592 (1621)
T KOG1837|consen 1590 LME 1592 (1621)
T ss_pred HHh
Confidence 664
No 224
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=31.53 E-value=6.9e+02 Score=26.96 Aligned_cols=198 Identities=12% Similarity=0.172 Sum_probs=85.6
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhc----ccc---CChhHHHHHHHHHHhc--C-CCCCCc--hHHHHHHHHHHHHHh
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAH----INF---SDQNNFRKALHSVVSG--L-RDPELP--VRVDSVFALRSFVEA 530 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~----~~~---~~~~~~~~~~~~l~~~--l-~~~~~~--V~~~A~~al~~~~~~ 530 (838)
..|.|.+....+-...+..|++|.... ... +....+..++..++-- + .+..++ +-...-+.+..+++.
T Consensus 72 k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~lpl~lqG 151 (373)
T PF14911_consen 72 KWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKSLPLFLQG 151 (373)
T ss_pred HHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHHHHHHHHH
Confidence 346666665677788889999988643 111 1112333343333321 1 232222 222222333333332
Q ss_pred cc-----cccccccchHHHHHHHHHHhhhhchhh-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003214 531 CR-----DLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDAD 604 (838)
Q Consensus 531 ~~-----~~~~l~p~l~~il~~L~~ll~~~~~~~-l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~ 604 (838)
.. ...++...+.+++.+.+.-.....+.. ... +........+...++..-+++.+...|++.-. ...-
T Consensus 152 l~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~-l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~-~~p~---- 225 (373)
T PF14911_consen 152 LGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVAR-LSTLLSAFTPRNEELRKFILQVIRSNFLEFKG-SAPP---- 225 (373)
T ss_pred HHhcccccChHHHHHHHHHHHHHHhHhccCCCcccccc-ccccccchhhhhhHHHHHHHHHHHHHHhcCCC-CCCC----
Confidence 21 233344444444444444333222111 111 11111122222333444555555555554311 1111
Q ss_pred ChhHHHHHHHHHHHHHHHHhhc-C-ChHHHHHHHhhHHHHHHHHhccC-hhhHHHHHHHHHHHhhhcCC
Q 003214 605 DPGALAAVGCLRAISTILESVS-R-LPHLFVQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSP 670 (838)
Q Consensus 605 ~~~~~~~~~~l~~i~~i~~~~~-~-~~~~~~~l~~~~~p~i~~~l~~~-~~~~~~~~l~ll~~~~~~~~ 670 (838)
+ -...++..|..+++.+. . ......-+.-.+.|++++.+--+ ...--.-+.+++..+++.+.
T Consensus 226 ---p-~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 226 ---P-RLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred ---C-cHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 1 13456777778887752 1 11222223344444555544333 33444566667777776553
No 225
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.97 E-value=6.2e+02 Score=29.57 Aligned_cols=113 Identities=9% Similarity=0.140 Sum_probs=70.7
Q ss_pred HHhhcc-cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-----
Q 003214 397 LVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS----- 470 (838)
Q Consensus 397 l~~~~~-~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~----- 470 (838)
|.++.+ +++.+.++.++...+.. .+....|.++..+..+++.+.- ++..+.|+|.+.
T Consensus 377 L~~Kt~~e~~~~~IlplL~~S~~~--------~~~~iQ~~~L~~lptv~e~iD~---------~~vk~~ilP~l~~l~~~ 439 (700)
T KOG2137|consen 377 LKEKTPPEEVKEKILPLLYRSLED--------SDVQIQELALQILPTVAESIDV---------PFVKQAILPRLKNLAFK 439 (700)
T ss_pred HHhhCChHHHHHHHHHHHHHHhcC--------cchhhHHHHHHhhhHHHHhccH---------HHHHHHHHHHhhcchhc
Confidence 444443 45666777766666543 4789999999999999987631 334445555443
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 003214 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
.....++-.++-+++.+.+-. +-......+..+..+++..++.+...-........
T Consensus 440 tt~~~vkvn~L~c~~~l~q~l--D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 440 TTNLYVKVNVLPCLAGLIQRL--DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred ccchHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 356788999999999987532 22234445555666666556655544444444443
No 226
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.29 E-value=9.2e+02 Score=28.01 Aligned_cols=95 Identities=22% Similarity=0.280 Sum_probs=63.0
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhcccc------CCh-hHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF------SDQ-NNFRKA 501 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~------~~~-~~~~~~ 501 (838)
+.+.+-+|+-++-.++++++=. ...-+.....+.+.+--+|..|..++.-|+...+ .+. .....+
T Consensus 211 D~~Vrt~A~eglL~L~eg~kL~--------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFKLS--------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred CcchHHHHHHHHHhhccccccc--------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 6677888888887777754311 1111111223456777788888666666654321 111 346888
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 502 LHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 502 ~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+..++..+.|-+..||+.|+++|..|=...
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 999999999999999999999999886553
No 227
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=8.1e+02 Score=27.33 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=69.2
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCC-hhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSD-QNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il 545 (838)
-..+|+..+|+-||-.+|.-++..++. -.+...++.+++..|-| .+..|...|..+|....+... ...+.+|+-++-
T Consensus 266 ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-~~~l~~~~l~ia 344 (533)
T KOG2032|consen 266 KATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-NDDLESYLLNIA 344 (533)
T ss_pred hccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-hcchhhhchhHH
Confidence 345678899999999999987642111 14567788888888765 467799999999999998874 788889999988
Q ss_pred HHHHHHhhhhchh
Q 003214 546 DEFFKLMNEVENE 558 (838)
Q Consensus 546 ~~L~~ll~~~~~~ 558 (838)
-++-++....+.+
T Consensus 345 lrlR~l~~se~~~ 357 (533)
T KOG2032|consen 345 LRLRTLFDSEDDK 357 (533)
T ss_pred HHHHHHHHhcChh
Confidence 8888887764443
No 228
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=30.25 E-value=70 Score=30.59 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
...+...+.+|+... ...+++.+-.... +..||.+|+..|+.+ ..+.+.-|+++++|.|
T Consensus 61 ~~e~~~ll~~W~~~~------~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~-----~d~~l~~yLpQLVQaL 119 (184)
T smart00145 61 VAQALSLLKKWAPLD------PEDALELLSPKFP--DPFVRAYAVERLESA-----SDEELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHcCCCCC------HHHHHHHhCccCC--CHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 229
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=30.16 E-value=4e+02 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
.....++.++-+.|+++++.|+..|...|..++.+|.
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 4467788888999999999999999999999999985
No 230
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=30.04 E-value=4.2e+02 Score=23.99 Aligned_cols=67 Identities=9% Similarity=0.086 Sum_probs=43.8
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
.++...--|.+..++--+--..|-.+.. ++......+.++.+.|++.++.|++.|...|..++.+|.
T Consensus 4 ~~iekAT~~~l~~~dw~~ileicD~In~-------~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG 70 (139)
T cd03567 4 AWLNKATNPSNREEDWEAIQAFCEQINK-------EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG 70 (139)
T ss_pred HHHHHHcCccCCCCCHHHHHHHHHHHHc-------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 3333333333444443334444554421 223457788888899999898899999999999999986
No 231
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=29.75 E-value=4e+02 Score=26.98 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=79.2
Q ss_pred hhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh----cccccccC-----CCcchhhHHHHHHHhhhccccCChhH----
Q 003214 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQ----HVFPEFSS-----PVGHLRAKAAWVAGQYAHINFSDQNN---- 497 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~----~v~p~l~~-----~~~~lr~ra~~~l~~~~~~~~~~~~~---- 497 (838)
...-.++.++.++|.+- +.+. .|+.. ++.|.|+. +.-.+|-..+=++|...+.. +++.
T Consensus 65 nRVcnaLaLlQ~vAshp----etr~---~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d--~~evi~fL 135 (262)
T PF04078_consen 65 NRVCNALALLQCVASHP----ETRM---PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTD--DPEVISFL 135 (262)
T ss_dssp HHHHHHHHHHHHHHH-T----TTHH---HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCh----HHHH---HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCC--cHHHHHHH
Confidence 55666777777777642 2221 22322 34454542 24579999999999987643 4432
Q ss_pred -HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc-hhhHHHHHHHHHHhhcccc
Q 003214 498 -FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE-NEDLVFTLETIVDKFGEEM 575 (838)
Q Consensus 498 -~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~-~~~l~~~l~~iv~~~~~~i 575 (838)
-.++++..++.|...+...|.-|..-+..++.+...-+ -.-++.+ ...+..+++.++....++-
T Consensus 136 l~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~--------------yiC~t~eRf~av~~vL~~mV~~l~~~p 201 (262)
T PF04078_consen 136 LQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLN--------------YICQTAERFFAVAMVLNKMVEQLVKQP 201 (262)
T ss_dssp HCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHH--------------HHTSSHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHH--------------HHhcCHHHHHHHHHHHHHHHHHHccCC
Confidence 14667777777765555667777777777776642111 1111111 1236677777777665443
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 003214 576 APYALGLCQNLAAAFWRCMN 595 (838)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~ 595 (838)
.+-+..+.+.++.++.+
T Consensus 202 ---S~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 202 ---SPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp ----HHHHHHHHHHHHHHTT
T ss_pred ---ChhHHHHHHHHHHHHcc
Confidence 44788888888888643
No 232
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.58 E-value=2.4e+02 Score=23.39 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003214 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKT 114 (838)
Q Consensus 51 ~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~ 114 (838)
.-.+|-+||-.++..+++ +.+ -.+.-|..|-+.+.+.+.++.+.+.++++.+.+-
T Consensus 19 h~~LRd~AA~lL~~I~~~-~~~--------~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL 73 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRK-FSS--------SYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGL 73 (92)
T ss_pred hHHHHHHHHHHHHHHHHH-hcc--------ccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 558999999999997766 443 2344677788888888888888888888776553
No 233
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.06 E-value=3.7e+02 Score=31.19 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=53.1
Q ss_pred cchhhHhHHHHHHHHHHHHhh-cCCc----chHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLK-QTEP----YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKAL 502 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~-~~~~----~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~ 502 (838)
.....+.+++.++|++..... +... ....+.+.+...+.......+..-+-.++..+|..+. ...+
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~---------~~~i 479 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH---------PSSI 479 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC---------hhHH
Confidence 366899999999999998543 3221 1123334443333222222333345556667776543 1122
Q ss_pred HHHHhcCC-C--CCCchHHHHHHHHHHHHHhc
Q 003214 503 HSVVSGLR-D--PELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 503 ~~l~~~l~-~--~~~~V~~~A~~al~~~~~~~ 531 (838)
..+...+. + .+..+|..|+.||+++...+
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 22222222 3 34569999999999887654
No 234
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=28.26 E-value=5.3e+02 Score=24.61 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccc-----cCCCC------CCcchhhHhHHHHHHHHHHHHhhc-----
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY-----DETPV------EYKPYRQKDGALLAIGALCDKLKQ----- 449 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~-----~~~~~------~~~~~~~~ea~l~~lg~i~~~l~~----- 449 (838)
.|.+|..+|.++++..++..+- ++-...+-+. ...+. .+.+.+.|-+++.++..+-++.+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~---~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLF---GYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeH---hhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 6899999999999995544432 2222333222 01110 124789999999999988877531
Q ss_pred --CC----cc---hHHHHHHHhh---cccccccC-CCcchhhHHHHHHHhhhccc-cC--ChhHHHHHHHHHHhcCCCCC
Q 003214 450 --TE----PY---KSELERMLVQ---HVFPEFSS-PVGHLRAKAAWVAGQYAHIN-FS--DQNNFRKALHSVVSGLRDPE 513 (838)
Q Consensus 450 --~~----~~---~~~~~~~l~~---~v~p~l~~-~~~~lr~ra~~~l~~~~~~~-~~--~~~~~~~~~~~l~~~l~~~~ 513 (838)
.. .| -..+..++.+ .+.-.++. .++-+-...+.+++...... |. +.+.+..++..+...+.+.|
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 00 11 1222222221 12222332 34555667778887765432 11 23677888888888888888
Q ss_pred CchHHHHHHHHHHHHHhc
Q 003214 514 LPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 514 ~~V~~~A~~al~~~~~~~ 531 (838)
..|++.|..++..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 899999999999988764
No 235
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=28.22 E-value=73 Score=30.02 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
...+...+.+|.... ...+++.+-....| ..||.+|+..|+.+ +.+.+.-|+++++|.|
T Consensus 56 v~e~~~lL~~W~~i~------~~~aLeLL~~~f~d--~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaL 114 (171)
T cd00872 56 VAQMYQLLKRWPKLK------PEQALELLDCNFPD--EHVREFAVRCLEKL-----SDDELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHHHCCCCCC------HHHHHHHCCCcCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 236
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=28.11 E-value=2.1e+02 Score=24.91 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=45.2
Q ss_pred HHHHhcCC-CC-CCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhhcccc
Q 003214 503 HSVVSGLR-DP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGEEM 575 (838)
Q Consensus 503 ~~l~~~l~-~~-~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~----l~~~l~~iv~~~~~~i 575 (838)
.-++..|. +. +.--...|..+...++.... ....+..+..+++..|+.+=++++.+. -..+|-+++-.....+
T Consensus 6 rDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~ 85 (114)
T PF10193_consen 6 RDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKV 85 (114)
T ss_dssp HHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHH
Confidence 33444444 22 34455678888899998863 123788999999999999988776543 4667777777776677
Q ss_pred hhhH
Q 003214 576 APYA 579 (838)
Q Consensus 576 ~p~~ 579 (838)
+||.
T Consensus 86 ~~~L 89 (114)
T PF10193_consen 86 APYL 89 (114)
T ss_dssp HH-H
T ss_pred HHHH
Confidence 7654
No 237
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.81 E-value=8.6e+02 Score=26.88 Aligned_cols=310 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--------hHHHHHHHHHHHHHHcccCCccCc
Q 003214 91 DHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--------QVYGALFVLRILSRKYEFKSDEER 162 (838)
Q Consensus 91 ~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--------~~~~~L~~L~~i~~~~~~~~~~~~ 162 (838)
...+..|..++..|....+.+++.++...-...=...++.+.+.+.+. .+..|+.||..+++. ++-|
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-----~~~R 178 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-----DEYR 178 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-----chHH
Q ss_pred chHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhh-cCCcccCChhhHHHHHHHHHHHhcCCCCCCC
Q 003214 163 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFNAWMILFLNVLERPVPSEG 241 (838)
Q Consensus 163 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (838)
..+-..= .++.+.++...... ..+++..++=|++-++.. +.-+.+...+.+...+..+......
T Consensus 179 ~~f~~~~--~v~~L~~~L~~~~~-------~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KE------ 243 (429)
T cd00256 179 FAFVLAD--GVPTLVKLLSNATL-------GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKE------ 243 (429)
T ss_pred HHHHHcc--CHHHHHHHHhhccc-------cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhH------
Q ss_pred CCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHH-HHHHHHHhhhCCcccCHHHHH
Q 003214 242 EPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE-CHLNLLNRIRVGGYLPDRVTN 320 (838)
Q Consensus 242 ~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 320 (838)
|+-+-++.++..+...-.+.. -...+.+.+++ .+...++.....+|.++++..
T Consensus 244 --------------KvvRv~l~~l~Nll~~~~~~~------------~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~e 297 (429)
T cd00256 244 --------------KVIRIVLAIFRNLISKRVDRE------------VKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTD 297 (429)
T ss_pred --------------HHHHHHHHHHHHHhhcccccc------------hhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHH
Q ss_pred HHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhh
Q 003214 321 LILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK 400 (838)
Q Consensus 321 ~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~ 400 (838)
--..+.+.+...+ .++-.| ++|..+-..+-- .|||-.....+=..=+.+
T Consensus 298 ------------------dl~~L~e~L~~~~--------k~ltsf----D~Y~~El~sg~L-~WSp~H~se~FW~EN~~k 346 (429)
T cd00256 298 ------------------DLKFLTEELKNSV--------QDLSSF----DEYKSELRSGRL-HWSPVHKSEKFWRENADR 346 (429)
T ss_pred ------------------HHHHHHHHHHHHH--------HHcCCH----HHHHHHHhcCCc-cCCCCCCCchHHHHHHHH
Q ss_pred cccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHH
Q 003214 401 RGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 480 (838)
Q Consensus 401 ~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra 480 (838)
+.+.- -.++..+.+++.+ +.+....--|++=+|.+....+........+.. +..|+.+++++++-+|..|
T Consensus 347 f~~~~-~~llk~L~~iL~~-------s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~--K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 347 LNEKN-YELLKILIHLLET-------SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG--KQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred HHhcc-hHHHHHHHHHHhc-------CCCcceeehhhhhHHHHHHHCccHHHHHHHcCc--HHHHHHHhcCCCHHHHHHH
Q ss_pred HHHHHhh
Q 003214 481 AWVAGQY 487 (838)
Q Consensus 481 ~~~l~~~ 487 (838)
+.+++++
T Consensus 417 L~avQkl 423 (429)
T cd00256 417 LLAVQKL 423 (429)
T ss_pred HHHHHHH
No 238
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=27.37 E-value=3e+02 Score=32.23 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=60.4
Q ss_pred cCCCcchhhHHHHHHHhhhccccCChhH-----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-cccc-ccchH
Q 003214 470 SSPVGHLRAKAAWVAGQYAHINFSDQNN-----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEI-RPILP 542 (838)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~-~~~l-~p~l~ 542 (838)
.++.+.++++|.-.+...+. .+.+. --.-++.++..+..+..-|+..||.||++++..... .+.+ .++.+
T Consensus 243 ~~q~~~~qsnaaaylQHlcf---gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~ 319 (717)
T KOG1048|consen 243 MSQDPSVQSNAAAYLQHLCF---GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELN 319 (717)
T ss_pred hccChhhhHHHHHHHHHHHh---hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcC
Confidence 46778888888877765442 22221 223355677777777778999999999999987641 1222 22222
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHHhhcc
Q 003214 543 QLLDEFFKLMNEVENEDLVFTLETIVDKFGE 573 (838)
Q Consensus 543 ~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~ 573 (838)
. +-.++.++.+....++-..+..+..+++.
T Consensus 320 G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 320 G-VPTLVRLLRHTQDDEVRELITGILWNLSS 349 (717)
T ss_pred C-hHHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence 2 22344556655555555556566655544
No 239
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.06 E-value=5.6e+02 Score=24.48 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=57.7
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~i 544 (838)
|+....++++-+|..|+-+++.....-+-+| ...++.++....|+++.+|..|...++.+.+.. ++.+..-..+-
T Consensus 13 Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~--~s~v~~~~~~g 87 (187)
T PF12830_consen 13 ILELCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH--ESLVESRYSEG 87 (187)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 4444456788899999999988755333354 567888888889999999999999999887774 24443333334
Q ss_pred HHHHHHHhh
Q 003214 545 LDEFFKLMN 553 (838)
Q Consensus 545 l~~L~~ll~ 553 (838)
++.-+..-.
T Consensus 88 i~~af~~~~ 96 (187)
T PF12830_consen 88 IRLAFDYQR 96 (187)
T ss_pred HHHHHHHHH
Confidence 444444433
No 240
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=27.00 E-value=1.2e+03 Score=28.25 Aligned_cols=122 Identities=14% Similarity=0.214 Sum_probs=75.3
Q ss_pred CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc----cccc---cccchHHH
Q 003214 472 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR----DLNE---IRPILPQL 544 (838)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~----~~~~---l~p~l~~i 544 (838)
.+-.+......++|+.+..+|. ...+.+++.+++.|++.|.++-.....++..++..+. +.+. ++|.+..+
T Consensus 97 s~n~l~iq~a~avs~IA~~DfP--deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei~p~L~~~ 174 (947)
T COG5657 97 SSNQLQIQNALAVSRIARLDFP--DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEIAPVLLSI 174 (947)
T ss_pred ccchHHHHHHHHHHHHHhccCc--ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 3344555777888888887764 4589999999999998777777777777777776653 2333 44555555
Q ss_pred HHHHHHHhhhhc------hhhH---HHHHHHHHHh----hcccchhhHHHHHHHHHHHHHHHHh
Q 003214 545 LDEFFKLMNEVE------NEDL---VFTLETIVDK----FGEEMAPYALGLCQNLAAAFWRCMN 595 (838)
Q Consensus 545 l~~L~~ll~~~~------~~~l---~~~l~~iv~~----~~~~i~p~~~~l~~~L~~~~~~~~~ 595 (838)
+...+......+ .+++ +.++-.++++ -.+++.++..+.++.....|.++..
T Consensus 175 l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls 238 (947)
T COG5657 175 LCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLS 238 (947)
T ss_pred HHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHh
Confidence 544444332211 1222 2222222232 2456778888888877777777765
No 241
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.92 E-value=1.6e+03 Score=32.11 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhc
Q 003214 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT 648 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~ 648 (838)
-.+||.++++..-.. +..+.. + ++ ..+..+.+++++++... +..++..++|++..+++
T Consensus 626 vl~phv~~Ii~~sme----la~~a~-e-------pl---nYf~LLraLFRsigGg~--~d~ly~e~lplL~~lLe 683 (3550)
T KOG0889|consen 626 VLRPHVHDIISTSME----LATTAP-E-------PL---NYFQLLRALFRSIGGGA--FDSLYREVLPLLPNLLE 683 (3550)
T ss_pred hcccchhHHHHHHHH----HHhcCC-c-------ch---hHHHHHHHHHHHhhccc--hHhHHHHHHHHHHHHHH
Confidence 467899888876443 222221 1 22 46777888899887543 34455666766666554
No 242
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.58 E-value=2.2e+02 Score=29.42 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=62.6
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++|..+=-++..+..++..=.+. ....+...+. .|...++++..-+.+.||.+++-..+.. +. .+.+.+..++.
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~--l~~~L~~vii-~vvkslKNlRS~VsraA~~t~~difs~l--n~-~i~~~ld~lv~ 173 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPES--LNPMLHEVII-AVVKSLKNLRSAVSRAACMTLADIFSSL--NN-SIDQELDDLVT 173 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHH--HHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHH
Confidence 48888888888888777653221 1222322222 2344555666678889999998865432 21 22223333333
Q ss_pred cC-C--CC-CCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 508 GL-R--DP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 508 ~l-~--~~-~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
.| . +. +-=|+..|-.||........ +..+.+.+.+
T Consensus 174 ~Ll~ka~~dnrFvreda~kAL~aMV~~vt-p~~~L~~L~~ 212 (334)
T KOG2933|consen 174 QLLHKASQDNRFVREDAEKALVAMVNHVT-PQKLLRKLIP 212 (334)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 33 1 22 33489999999999998864 4444333333
No 243
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.47 E-value=1.1e+02 Score=30.66 Aligned_cols=51 Identities=24% Similarity=0.157 Sum_probs=40.6
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
..+|.+|.-|.-.+|..++ .+.++.+..+++|++.+|+..+..||.-.-..
T Consensus 231 ~E~pMVRhEaAeALGaIa~---------e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD---------EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred hcchHHHHHHHHHHHhhcC---------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 4689999999999988764 34566777888999999999999888876443
No 244
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.93 E-value=5.4e+02 Score=23.93 Aligned_cols=62 Identities=8% Similarity=0.247 Sum_probs=41.1
Q ss_pred CchhHHHHHHHHHcccCcccchHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhhccChHHHHHH
Q 003214 744 EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK--SYLKCLLVQVIADALYYNSSLTLSI 806 (838)
Q Consensus 744 ~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~ 806 (838)
..+++++..++.++...+..-++.++..++.++...++ ..-+...++++-.. ..+|..++++
T Consensus 91 ~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l-~~~p~~l~~l 154 (168)
T PF12783_consen 91 SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL-CKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH-HhChhHHHHH
Confidence 45677788888877766667777788888886655332 23455567776554 4788766654
No 245
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.59 E-value=41 Score=29.40 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=40.4
Q ss_pred CCcchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 003214 472 PVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (838)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~ 529 (838)
.++...+-||.=+|+|....+.--..+ -.+=..++.+|+++|+-||..|..|+..+.-
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467777889999999987431110111 2234578889999999999999999998864
No 246
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.19 E-value=3.2e+02 Score=26.69 Aligned_cols=129 Identities=15% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHH-HHHHHHhhcCCcchHHHHHHHhhc
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAI-GALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~l-g~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
.|..|.+++....+...... ++.+...+.. .+||-..|+...-+ |.+ +...+ .+.+.
T Consensus 62 ~r~~al~~l~~~~~~~~~~~----~~~~~~~l~~-------~~~Wd~vD~~~~~i~g~~---~~~~~----~~~~~---- 119 (208)
T cd07064 62 YQYVAIDLLRKYKKFLTPED----LPLLEELITT-------KSWWDTVDSLAKVVGGIL---LADYP----EFEPV---- 119 (208)
T ss_pred HHHHHHHHHHHHHhcCCHHH----HHHHHHHHcC-------CchHHHHHHHHHHHhHHH---HhCCh----hHHHH----
Confidence 46677776666544433322 3333344432 24899989754333 332 11211 11121
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
+.....+++.++|+.|+...-.+.+ ......++..+..++.|++--|+-+-..+|+.+.... ++.+.+|+..
T Consensus 120 l~~W~~s~~~W~rR~ai~~~l~~~~-----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d--~~~V~~fl~~ 191 (208)
T cd07064 120 MDEWSTDENFWLRRTAILHQLKYKE-----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN--PDWVRDFVAA 191 (208)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC--HHHHHHHHHH
Confidence 2223357889999999865433322 1224556666777788887778888889999887663 4555555543
No 247
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=24.50 E-value=6e+02 Score=23.97 Aligned_cols=24 Identities=8% Similarity=0.385 Sum_probs=19.3
Q ss_pred cCcChhhHHHHHHHHHHhhhhcCC
Q 003214 48 NNCDLSVRQVASIHFKNFIAKNWA 71 (838)
Q Consensus 48 ~~~~~~iR~~Aai~lKn~i~~~W~ 71 (838)
+.++..+..+....+|++|...|+
T Consensus 2 ~~vd~~l~~li~~I~rdfV~sWY~ 25 (185)
T PF02194_consen 2 PEVDEALHELIDLILRDFVNSWYS 25 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456778889999999999999443
No 248
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.36 E-value=4.4e+02 Score=23.54 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
.....++.++-+.|+++++.|++.|...|..++.++.
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg 69 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCG 69 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC
Confidence 3457788888899998889999999999999999985
No 249
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=2.8e+02 Score=28.90 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=64.6
Q ss_pred hhhhhhhhhhhhhhhccCcccccccCCch---HHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC---c--cc
Q 003214 692 IDFFPNILVPLDNYISRGTAHFLTCKEPD---YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ---V--DH 763 (838)
Q Consensus 692 ~~~l~~~~~~L~~~i~~~~~~~l~~~~~~---~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~---~--~~ 763 (838)
++.-.+++++|+..+...|+.|+.+..|+ .++.++.++.++++.. ++. . .+...++...+.. + .|
T Consensus 238 FeLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrV--t~e---~--~lf~rvv~~~~~~le~V~hyp 310 (489)
T KOG4692|consen 238 FELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRV--TDE---F--FLFVRVVRRQGQPLEKVSHYP 310 (489)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhh--ccc---c--chhHHHHHhhcCChhhhcccc
Confidence 33445667777777788888888775553 4666667777777522 222 1 1445555443322 2 36
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHHH
Q 003214 764 WVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLT 803 (838)
Q Consensus 764 ~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~ 803 (838)
.+...+..+++-|...+.+..+.....+..+.+..+|...
T Consensus 311 il~a~~GIll~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq 350 (489)
T KOG4692|consen 311 ILAALVGILLNLLEASEDSKPRQQHDVIGLFASLDDPDFQ 350 (489)
T ss_pred hHHHHHHHHHHHHHhCcccCcccchhhhhhheeccCcchH
Confidence 7777777788888776655556666555566666777644
No 250
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=24.08 E-value=5.5e+02 Score=29.14 Aligned_cols=134 Identities=19% Similarity=0.099 Sum_probs=79.6
Q ss_pred HHHHHHHHhhccc-chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHH---HHHHHHhhcCCcchHHHHHHHhhccc
Q 003214 391 MDFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAI---GALCDKLKQTEPYKSELERMLVQHVF 466 (838)
Q Consensus 391 ~~ll~~l~~~~~~-~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~l---g~i~~~l~~~~~~~~~~~~~l~~~v~ 466 (838)
..++..|++.... ...+.+++.+...+.+. + .+-+.+-.++..+ ......+.. .....+.+++.....
T Consensus 301 ~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~----~--~~~klk~~~l~F~~~~~~~~~~~~~--~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 301 EKILSLLSKSVIAATSFPNILQIVFDGLYSD----N--TNSKLKSLALQFIRGSSWIFKHISP--QILKLLRPVILSQGW 372 (501)
T ss_pred HHHHHHHHHhHHHHhCCccHHHHHhccccCC----c--cccccchhcchhhhcchHHhhhcCH--HHHHHHHHHHHhcCc
Confidence 3556666665432 23345555555555431 1 1456666666666 444443322 123456677777777
Q ss_pred cccc--------CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 467 PEFS--------SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 467 p~l~--------~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
|.+. ....-+|+.+.-++|.++.-.+..-..--.+++.++..|.++..-||.+.-.||..+.....
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 7773 12467999999999999763211111124566667777766666688888888888877654
No 251
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=23.83 E-value=1e+02 Score=28.97 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
...+...+.+|.... ...+++.+-....| ..||.+|+..|+.+ +.+.+.-|+++++|.|
T Consensus 63 ~~e~~~lL~~W~~i~------~~~aLeLL~~~f~~--~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaL 121 (166)
T cd00870 63 VKQALELMPKWAKID------IEDALELLSPYFTN--PVVRKYAVSRLKLA-----SDEELLLYLLQLVQAL 121 (166)
T ss_pred HHHHHHHHhcCCCCC------HHHHHHHcCccCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 252
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.38 E-value=1.1e+03 Score=26.44 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-HHHHHHHH---HHhh
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETI---VDKF 571 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-l~~~l~~i---v~~~ 571 (838)
..+..++..+.....|++-.+|-.||+.|.+..... ++..+.|.+.++..+..-+-+..+++ ...++..+ ....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 567889999999999998899999999999999885 56777777777776666554433333 34444443 3332
Q ss_pred -cccchhhHHHHHHHHHH
Q 003214 572 -GEEMAPYALGLCQNLAA 588 (838)
Q Consensus 572 -~~~i~p~~~~l~~~L~~ 588 (838)
+..+.||...+.-.+-+
T Consensus 332 ~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhcchhhhchhHHHHHHH
Confidence 45677887777766664
No 253
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.21 E-value=3.7e+02 Score=32.81 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhcc--c-chH-HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003214 386 PRTASMDFVSELVRKRG--K-ENL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~--~-~~~-~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l 461 (838)
-|..|+=+|..++..|+ + ..+ ..+++.|.+.++.. ..|..|.=++.++|.+=+...+.. +. -....-
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~-------~~pLLrQW~~icLG~LW~d~~~Ar-w~-G~r~~A 643 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD-------PEPLLRQWLCICLGRLWEDYDEAR-WS-GRRDNA 643 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHhhhcchhh-hc-cccccH
Confidence 57778878888888774 2 222 45677777777641 258888888889998766543321 00 001111
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccc---cCCh-hH-----------------HHHHHHHHHhcCCCCCCchHHHH
Q 003214 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQ-NN-----------------FRKALHSVVSGLRDPELPVRVDS 520 (838)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---~~~~-~~-----------------~~~~~~~l~~~l~~~~~~V~~~A 520 (838)
...+..+|.++.|-+|+.|...+|-|-... |... .. .......++..++|..+.||..-
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 223445677889999999999999985421 2211 11 11112245555678788888888
Q ss_pred HHHHHHHHHhc
Q 003214 521 VFALRSFVEAC 531 (838)
Q Consensus 521 ~~al~~~~~~~ 531 (838)
+-+|..+.-..
T Consensus 724 ~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 724 VVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHhh
Confidence 88888876553
No 254
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=5.6e+02 Score=27.63 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred hcccccccCCCcchhhHHHHHHHhh-hccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQY-AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
..+++-+...+.-+|-.|..-+-++ ......-......+++.+...+.|.+.-||..+..++..++.... ++.+.|++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~-~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC-KEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-hhhhcchH
Q ss_pred HHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 003214 542 PQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (838)
Q Consensus 542 ~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (838)
.-++..+...|.....+. -+..+.-++.+|.+.+.-++..+......
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d 189 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKD 189 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHH
No 255
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.41 E-value=1.1e+02 Score=28.11 Aligned_cols=59 Identities=24% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
...+..++..|.... ....++.+.....| +.||.+|++.|+.+ ..+.+.-|+++++|.|
T Consensus 56 ~~e~~~lL~~W~~~~------~~~aL~LL~~~~~~--~~vr~yAv~~L~~~-----~~~~l~~ylpQLVQaL 114 (152)
T cd00864 56 VSELYQLLKWWAPLS------PEDALELLSPKYPD--PVVRQYAVRVLESA-----SDDELLLYLPQLVQAL 114 (152)
T ss_pred HHHHHHHHhcCCCCC------HHHHHHHcCCcCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 256
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.35 E-value=1.2e+02 Score=35.74 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=51.0
Q ss_pred chhhHhHHHHHHHHHHHHhhcCC-----------cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTE-----------PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN 497 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~-----------~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~ 497 (838)
+...+.+|+.++|++........ .....+.+.+.+.+.......+.--+--++..+|..+.
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 45788999999999998854431 11111122222211111112233445555666666542
Q ss_pred HHHHHHHHHhcCCCC---CCchHHHHHHHHHHHHHhc
Q 003214 498 FRKALHSVVSGLRDP---ELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~---~~~V~~~A~~al~~~~~~~ 531 (838)
...++.+...+.+. +..+|.+|+.||+.+...+
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 23456666766654 5569999999999875543
No 257
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.35 E-value=3.5e+02 Score=22.15 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHhhc---CCC-----hHHHHHHHHHhcCcChhhHH
Q 003214 5 SLALILQGALSPN----PEERKAAEHSLNQFQY---TPQ-----HLVRLLQIIVDNNCDLSVRQ 56 (838)
Q Consensus 5 ~l~~~L~~~ls~d----~~~r~~Ae~~L~~~~~---~p~-----f~~~Ll~i~~~~~~~~~iR~ 56 (838)
+..++|.. ...| .++|+.|++....+.+ .|+ ....|=+|..+++.|...|.
T Consensus 17 q~~~lL~~-Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT 79 (93)
T COG1698 17 QVMQLLDE-IIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHART 79 (93)
T ss_pred HHHHHHHH-HHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44555555 2233 4689999998887764 232 12333344444555555554
No 258
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=1.5e+03 Score=27.66 Aligned_cols=108 Identities=13% Similarity=0.214 Sum_probs=58.5
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc---chHHHHHHHhhccccccc
Q 003214 394 VSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP---YKSELERMLVQHVFPEFS 470 (838)
Q Consensus 394 l~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~---~~~~~~~~l~~~v~p~l~ 470 (838)
+..++...|++.-+.++.++...+..... ++.....+|-.++..+++.+.-..+ +..+. +++.+.+--.++
T Consensus 572 I~~~a~~~g~~F~~~L~~~ly~vl~k~a~-----~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~-DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 572 IGTIAAVMGEEFQPELMDYLYPVLEKLAS-----PSEAISQVAQSCALRIADALNYGSPPHLIRENV-DYLVNSLALRLN 645 (1014)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHHHHHHHcCCCChHHHHHhhh-HHHHHHHHHHhc
Confidence 33344445666666667766666655432 2456777777788888887754221 11122 233333433333
Q ss_pred -CC-CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 003214 471 -SP-VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (838)
Q Consensus 471 -~~-~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 510 (838)
++ +|.+ ...+-++++|++.- .-..+..+++.++..+.
T Consensus 646 ~~~~s~~~-~~Vl~vVl~~s~~~--~i~~l~dvvq~i~~~lD 684 (1014)
T KOG4524|consen 646 TSGMSPRV-PDVLMVVLQYSDYG--TIPNLKDVVQTIFKLLD 684 (1014)
T ss_pred cCCCCchh-HHHHHHHhhcCCCC--chhhHHHHHHHHHHHHH
Confidence 22 3322 34566677777543 22456777777777764
No 259
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.64 E-value=3.3e+02 Score=23.09 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCC-CHh-hhHhHHHHHHHH
Q 003214 632 FVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI-SLE-MWSLWPLMMEAL 687 (838)
Q Consensus 632 ~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~-~~~-l~~l~~~l~~~~ 687 (838)
.....+.++..+...+++=..+...|++.++..++.+.|.. -+. -..+++..+.++
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 34455677777777776666789999999999999887654 222 224555555554
No 260
>PHA01351 putative minor structural protein
Probab=21.54 E-value=1.3e+03 Score=27.00 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=10.9
Q ss_pred HHHHHHcccCcccchHHHHHHHHHHH
Q 003214 751 EVVFQNCKGQVDHWVEPYLRITVERL 776 (838)
Q Consensus 751 ~~i~~~~~~~~~~~l~~il~~~l~~l 776 (838)
+.|+..+++...+++.++-..+++.+
T Consensus 213 g~i~k~~~e~~~d~lkdi~de~~tt~ 238 (1070)
T PHA01351 213 GEIIKAFAETSVDFLNEIRDELATTL 238 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444334444444444444433
No 261
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.39 E-value=2.6e+03 Score=30.24 Aligned_cols=242 Identities=16% Similarity=0.152 Sum_probs=119.6
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCC--cchHHHHHHHhhcccccccCCCcchhhHHHHHHHh-----h-hccccCCh--hH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTE--PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQ-----Y-AHINFSDQ--NN 497 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~--~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~-----~-~~~~~~~~--~~ 497 (838)
+.|..|.++..+++++.+.+...- ++..++..-+.- ++-.+.+..+-...+.+..+.. + .+..+... ..
T Consensus 1045 ~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~f-vl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~ 1123 (3550)
T KOG0889|consen 1045 STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFF-VLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKS 1123 (3550)
T ss_pred HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHH-hhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 489999999999999988765210 111111111111 2222332222222222222111 1 12221111 23
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh--h--chh-----hHHHHHHHHH
Q 003214 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--V--ENE-----DLVFTLETIV 568 (838)
Q Consensus 498 ~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~--~~~-----~l~~~l~~iv 568 (838)
...++..++..+.+++..||..+..+|..+.+... +-+..++..+.+++-. . ..+ ...+.++.+.
T Consensus 1124 ~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~------~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~ 1197 (3550)
T KOG0889|consen 1124 AMNVFSPLVLELFNPNSDVREFSQKLLRLISELSG------KSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAIT 1197 (3550)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHH
Confidence 56677777778888888999999999999888753 2333444444444310 0 111 1223333332
Q ss_pred H--hhcccchhhHHHHHHHHHHHHHHHHhcccCCCC-------CCC---hhHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 003214 569 D--KFGEEMAPYALGLCQNLAAAFWRCMNTAEADED-------ADD---PGALAAVGCLRAISTILESVSRLPHLFVQIE 636 (838)
Q Consensus 569 ~--~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~-------~~~---~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~ 636 (838)
. ..++..-.+-.++..... .+-.+.. ..+++. ... .-...+..|++.+.+..............+.
T Consensus 1198 fC~~l~p~~f~~~~~l~~l~~-~~~~La~-~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r 1275 (3550)
T KOG0889|consen 1198 FCLSLGPCLFDFTEELYRLKR-FLIALAD-AEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELR 1275 (3550)
T ss_pred HHHHcCCcccCchHHHHHHHH-HHHHhhh-hhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhh
Confidence 2 223332223333332111 0001110 000000 000 0011245566666666555543333334556
Q ss_pred hhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhH
Q 003214 637 PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWS 678 (838)
Q Consensus 637 ~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~ 678 (838)
+.++-++-..+..+..++.+.+...+...+......+-+.++
T Consensus 1276 ~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq 1317 (3550)
T KOG0889|consen 1276 EKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQ 1317 (3550)
T ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHH
Confidence 777777777787888899998888888887665556655553
No 262
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=21.26 E-value=1.2e+02 Score=28.41 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
...+..++.+|.... ....++.+.....| ..||.+|+.+|+.+ ..+.+.-|+++++|.|
T Consensus 56 ~~e~~~LL~~W~p~~------p~~ALeLL~~~f~d--~~VR~yAV~~L~~~-----~ddeL~~yLpQLVQaL 114 (169)
T cd00869 56 LMDVYQLLHQWAPLR------PLIALELLLPKFPD--QEVRAHAVQWLARL-----SNDELLDYLPQLVQAL 114 (169)
T ss_pred HHHHHHHHhCCCCCC------HHHHHHHcCCcCCC--hHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 263
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=20.83 E-value=1.1e+03 Score=25.56 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=75.8
Q ss_pred HHHHHHHHHh-cCCCCCCchHHHHHHHHHHHHHhccc-ccccccchHHHHHHHHHHhhhh--chhhHHHHHHHHHHhhcc
Q 003214 498 FRKALHSVVS-GLRDPELPVRVDSVFALRSFVEACRD-LNEIRPILPQLLDEFFKLMNEV--ENEDLVFTLETIVDKFGE 573 (838)
Q Consensus 498 ~~~~~~~l~~-~l~~~~~~V~~~A~~al~~~~~~~~~-~~~l~p~l~~il~~L~~ll~~~--~~~~l~~~l~~iv~~~~~ 573 (838)
+....+.+.. .++++ ..||.+|-+.++.++.+... .....-.++-++-.-+..-++. |-+..+..+..+++.-+
T Consensus 23 ~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~- 100 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK- 100 (371)
T ss_pred HHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-
Confidence 3444444544 34554 77999999999999988652 2222334555444444333322 33357777788777632
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhh
Q 003214 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQE 653 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~ 653 (838)
....+-..++..++. +.+. .+ | -++..|++++.++.-. +|+.... .+-+-+++..+++ ...+
T Consensus 101 ~~~~~~~~vvralva----iae~-~~------D--~lr~~cletL~El~l~---~P~lv~~-~gG~~~L~~~l~d-~~~~ 162 (371)
T PF14664_consen 101 GPKEIPRGVVRALVA----IAEH-ED------D--RLRRICLETLCELALL---NPELVAE-CGGIRVLLRALID-GSFS 162 (371)
T ss_pred CcccCCHHHHHHHHH----HHhC-Cc------h--HHHHHHHHHHHHHHhh---CHHHHHH-cCCHHHHHHHHHh-ccHh
Confidence 111122355555554 4332 11 1 2456788888777654 4554321 1333444444443 2222
Q ss_pred HHHHHHHHHHHhh
Q 003214 654 VFEEVLEIVSYMT 666 (838)
Q Consensus 654 ~~~~~l~ll~~~~ 666 (838)
..+..+..+..++
T Consensus 163 ~~~~l~~~lL~lL 175 (371)
T PF14664_consen 163 ISESLLDTLLYLL 175 (371)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444344443
No 264
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=20.66 E-value=1.5e+02 Score=34.11 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=56.6
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
..+++.+..++.-+|.+-+.-+-+|.+.. ..+..-.++++.+...+.|++..+|..+..++..++....
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhc-CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 34555778888889999888888888754 3445568999999999999999999999999998887764
Done!