Query 003214
Match_columns 838
No_of_seqs 213 out of 1712
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 2.3E-82 7.8E-87 776.2 66.2 785 2-836 3-834 (960)
2 4fdd_A Transportin-1; heat rep 100.0 2.9E-49 1E-53 479.3 55.1 733 3-834 12-773 (852)
3 3m1i_C Exportin-1; heat repeat 100.0 8.1E-46 2.8E-50 456.8 50.6 737 1-804 13-840 (1049)
4 2x19_B Importin-13; nuclear tr 100.0 3.6E-43 1.2E-47 432.3 61.9 719 1-778 21-828 (963)
5 2x1g_F Cadmus; transport prote 100.0 1.1E-43 3.9E-48 436.4 52.8 632 1-684 4-740 (971)
6 2bpt_A Importin beta-1 subunit 100.0 2.2E-42 7.4E-47 421.4 51.0 692 1-778 1-734 (861)
7 4hat_C Exportin-1; heat repeat 100.0 9.9E-39 3.4E-43 383.6 49.6 732 1-796 13-832 (1023)
8 1qgr_A Protein (importin beta 100.0 2E-37 6.8E-42 378.3 53.9 676 5-777 2-744 (876)
9 3gjx_A Exportin-1; transport, 100.0 1E-37 3.5E-42 371.7 43.5 725 1-793 25-855 (1073)
10 3ibv_A Exportin-T; karyopherin 100.0 1.9E-34 6.5E-39 346.7 57.5 623 1-686 3-746 (980)
11 3a6p_A Exportin-5; exportin-5, 100.0 1.6E-28 5.3E-33 303.4 53.4 521 4-567 11-655 (1204)
12 1ibr_B P95, importin beta-1 su 100.0 4.6E-31 1.6E-35 297.2 27.0 424 5-510 2-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.9 3.9E-19 1.3E-23 223.8 49.2 671 3-778 5-744 (1230)
14 4fdd_A Transportin-1; heat rep 99.8 1.3E-16 4.4E-21 193.0 48.5 688 5-803 49-790 (852)
15 1qgr_A Protein (importin beta 99.8 2.9E-17 9.8E-22 200.1 42.0 624 50-793 13-718 (876)
16 2bpt_A Importin beta-1 subunit 99.8 1.7E-14 5.6E-19 175.3 57.6 653 9-778 100-836 (861)
17 1u6g_C TIP120 protein, CAND1; 99.6 1.8E-12 6E-17 163.2 43.0 606 38-761 8-685 (1230)
18 1b3u_A Protein (protein phosph 99.4 3.7E-10 1.3E-14 130.5 36.9 526 3-669 9-550 (588)
19 1b3u_A Protein (protein phosph 99.4 2.7E-10 9.2E-15 131.6 32.9 525 4-665 48-585 (588)
20 2x19_B Importin-13; nuclear tr 99.1 6.1E-06 2.1E-10 101.0 55.1 714 5-809 104-906 (963)
21 1wa5_C Importin alpha RE-expor 99.1 8.6E-06 2.9E-10 99.3 50.4 312 384-735 419-772 (960)
22 1ibr_B P95, importin beta-1 su 99.0 1.9E-07 6.6E-12 103.9 33.0 318 388-730 107-457 (462)
23 2x1g_F Cadmus; transport prote 98.8 1.2E-06 4.3E-11 107.1 29.5 307 472-804 476-821 (971)
24 3m1i_C Exportin-1; heat repeat 98.7 0.00018 6.1E-09 88.5 43.8 384 384-778 467-910 (1049)
25 2vgl_B AP-2 complex subunit be 98.6 2.4E-05 8.1E-10 89.6 30.6 126 386-531 369-495 (591)
26 2qk1_A Protein STU2; STU2P, XM 98.6 3E-07 1E-11 92.2 12.3 185 428-627 28-224 (249)
27 2jdq_A Importin alpha-1 subuni 98.3 3.1E-05 1.1E-09 85.5 22.4 348 38-532 22-393 (450)
28 4b8j_A Importin subunit alpha- 98.3 1.9E-05 6.5E-10 89.4 20.1 375 386-796 90-495 (528)
29 2qk2_A LP04448P; mini spindles 98.3 7.8E-06 2.7E-10 82.0 14.1 185 383-582 28-219 (242)
30 2jdq_A Importin alpha-1 subuni 98.2 6.6E-05 2.2E-09 82.9 21.4 339 385-757 35-392 (450)
31 1wa5_B Importin alpha subunit; 98.2 2.1E-05 7.3E-10 89.0 16.9 339 429-796 144-509 (530)
32 1w63_A Adapter-related protein 98.2 0.00028 9.7E-09 81.0 25.8 112 428-551 119-231 (618)
33 2qk1_A Protein STU2; STU2P, XM 98.2 1.3E-05 4.5E-10 80.3 12.5 190 383-582 29-234 (249)
34 2vgl_B AP-2 complex subunit be 98.1 0.00011 3.8E-09 84.0 21.4 151 384-556 63-215 (591)
35 4b8j_A Importin subunit alpha- 98.1 4.8E-05 1.6E-09 86.1 17.3 338 429-799 87-445 (528)
36 2qk2_A LP04448P; mini spindles 98.1 2.8E-05 9.6E-10 77.8 12.9 174 428-627 27-209 (242)
37 4hat_C Exportin-1; heat repeat 98.0 0.00014 4.7E-09 87.8 19.9 382 383-778 466-910 (1023)
38 1wa5_B Importin alpha subunit; 98.0 0.00019 6.6E-09 81.1 19.5 295 386-711 147-461 (530)
39 3ibv_A Exportin-T; karyopherin 98.0 0.00021 7.2E-09 86.1 19.9 285 474-776 457-789 (980)
40 1w63_A Adapter-related protein 97.7 0.0014 4.9E-08 75.1 20.6 128 385-530 122-264 (618)
41 2vgl_A Adaptor protein complex 97.6 0.15 5.2E-06 58.0 37.4 56 476-531 496-552 (621)
42 3ul1_B Importin subunit alpha- 97.6 0.0075 2.6E-07 67.4 24.0 340 429-797 114-478 (510)
43 3now_A UNC-45 protein, SD10334 97.6 0.071 2.4E-06 61.8 32.0 276 406-706 375-693 (810)
44 2vgl_A Adaptor protein complex 97.5 0.006 2E-07 69.8 22.7 144 428-587 86-234 (621)
45 3tpo_A Importin subunit alpha- 97.5 0.018 6.3E-07 64.6 25.3 259 429-710 133-409 (529)
46 2z6h_A Catenin beta-1, beta-ca 97.4 0.067 2.3E-06 61.6 29.3 123 13-151 23-168 (644)
47 4hxt_A De novo protein OR329; 97.3 0.0038 1.3E-07 62.2 15.7 218 429-671 15-245 (252)
48 2z6g_A B-catenin; FULL-length, 97.3 0.024 8.3E-07 66.8 24.8 126 15-151 161-304 (780)
49 3tpo_A Importin subunit alpha- 97.2 0.0067 2.3E-07 68.2 17.4 253 386-668 136-407 (529)
50 4hxt_A De novo protein OR329; 97.1 0.0021 7.1E-08 64.2 11.0 185 468-667 10-199 (252)
51 4db8_A Armadillo-repeat protei 97.1 0.0048 1.6E-07 61.6 13.2 186 466-666 60-250 (252)
52 1xqr_A HSPBP1 protein; armadil 97.0 0.0054 1.9E-07 62.6 13.2 180 468-666 90-286 (296)
53 3now_A UNC-45 protein, SD10334 97.0 0.35 1.2E-05 56.1 28.8 302 384-708 218-566 (810)
54 2z6g_A B-catenin; FULL-length, 97.0 0.094 3.2E-06 61.7 24.9 289 386-708 131-429 (780)
55 3ul1_B Importin subunit alpha- 96.9 0.011 3.8E-07 66.0 15.7 300 386-709 117-432 (510)
56 4db6_A Armadillo repeat protei 96.9 0.0074 2.5E-07 58.3 12.0 181 465-666 17-208 (210)
57 1xqr_A HSPBP1 protein; armadil 96.8 0.018 6.3E-07 58.7 14.7 129 386-531 98-240 (296)
58 1jdh_A Beta-catenin; beta-cate 96.7 0.34 1.2E-05 53.9 25.9 255 428-708 29-296 (529)
59 2z6h_A Catenin beta-1, beta-ca 96.6 0.13 4.5E-06 59.1 22.4 258 428-708 26-293 (644)
60 4db8_A Armadillo-repeat protei 96.5 0.011 3.7E-07 59.0 10.3 183 468-667 20-209 (252)
61 4db6_A Armadillo repeat protei 96.4 0.015 5.2E-07 56.0 10.5 153 384-555 26-192 (210)
62 3u0r_A Apoptosis inhibitor 5; 96.3 0.32 1.1E-05 51.5 20.1 149 471-648 39-187 (507)
63 3gjx_A Exportin-1; transport, 96.2 0.23 8E-06 59.7 21.2 380 384-778 493-934 (1073)
64 3nmw_A APC variant protein; AR 96.0 0.058 2E-06 56.6 13.0 183 473-667 97-292 (354)
65 2iw3_A Elongation factor 3A; a 95.9 0.049 1.7E-06 64.2 13.3 189 478-688 70-261 (986)
66 3ltj_A Alpharep-4; protein eng 95.8 0.11 3.9E-06 49.4 13.4 78 428-527 26-103 (201)
67 1oyz_A Hypothetical protein YI 95.8 0.047 1.6E-06 55.3 11.3 152 386-572 70-221 (280)
68 3b2a_A TON_1937, putative unch 95.8 0.31 1E-05 46.3 15.4 195 429-668 18-219 (265)
69 3ltm_A Alpha-REP4; protein eng 95.8 0.059 2E-06 51.9 11.3 173 428-667 31-203 (211)
70 3ltj_A Alpharep-4; protein eng 95.7 0.02 6.7E-07 54.9 7.6 108 384-528 28-135 (201)
71 1jdh_A Beta-catenin; beta-cate 95.7 0.17 6E-06 56.4 16.5 292 386-708 33-340 (529)
72 1oyz_A Hypothetical protein YI 95.6 0.36 1.2E-05 48.6 17.0 184 428-665 35-219 (280)
73 2db0_A 253AA long hypothetical 95.3 0.21 7.2E-06 45.2 11.9 164 382-569 44-207 (253)
74 3ltm_A Alpha-REP4; protein eng 95.3 0.034 1.2E-06 53.6 7.6 107 384-527 33-139 (211)
75 1xm9_A Plakophilin 1; armadill 94.6 1.2 4.1E-05 48.5 18.7 114 429-552 15-136 (457)
76 1xm9_A Plakophilin 1; armadill 94.4 0.57 1.9E-05 51.1 15.5 153 386-553 18-195 (457)
77 2db0_A 253AA long hypothetical 94.4 0.23 8E-06 45.0 9.5 164 428-624 44-211 (253)
78 1te4_A Conserved protein MTH18 94.2 0.032 1.1E-06 49.1 3.8 77 428-526 54-130 (131)
79 2iw3_A Elongation factor 3A; a 94.1 3.3 0.00011 48.9 21.6 212 384-665 109-325 (986)
80 3l6x_A Catenin delta-1; cateni 93.8 0.72 2.5E-05 51.4 14.6 221 429-669 103-386 (584)
81 3nmz_A APC variant protein; pr 93.6 0.68 2.3E-05 50.2 13.6 183 473-667 213-408 (458)
82 4ffb_C Protein STU2; tubulin f 92.7 0.66 2.2E-05 46.7 11.3 179 383-573 22-216 (278)
83 1te4_A Conserved protein MTH18 92.5 0.11 3.7E-06 45.6 4.5 78 428-528 24-101 (131)
84 3oc3_A Helicase MOT1, MOT1; re 91.8 1.4 4.6E-05 47.6 12.3 230 382-663 186-432 (800)
85 1w9c_A CRM1 protein, exportin 91.3 5.1 0.00018 40.4 15.5 121 539-669 69-198 (321)
86 3grl_A General vesicular trans 91.2 17 0.0006 40.3 20.9 329 468-813 130-519 (651)
87 3tjz_B Coatomer subunit gamma; 91.0 0.4 1.4E-05 49.7 7.4 134 408-568 68-201 (355)
88 3a6p_A Exportin-5; exportin-5, 90.8 38 0.0013 41.7 43.5 124 650-778 544-682 (1204)
89 3opb_A SWI5-dependent HO expre 88.7 5.9 0.0002 45.3 15.0 255 469-737 466-760 (778)
90 3b2a_A TON_1937, putative unch 88.0 10 0.00035 36.1 13.5 148 499-669 32-181 (265)
91 3l9t_A Putative uncharacterize 87.4 3.4 0.00012 39.5 10.3 126 383-531 84-209 (240)
92 3tjz_B Coatomer subunit gamma; 87.4 1.1 3.7E-05 46.5 7.5 91 428-530 116-206 (355)
93 3l6x_A Catenin delta-1; cateni 87.4 18 0.0006 40.3 17.7 161 385-555 207-407 (584)
94 1vsy_4 Proteasome activator BL 86.4 25 0.00085 40.7 18.8 111 459-569 338-455 (799)
95 3nmz_A APC variant protein; pr 84.3 23 0.00077 38.1 16.3 217 430-669 214-452 (458)
96 4ffb_C Protein STU2; tubulin f 82.8 11 0.00038 37.5 12.4 149 507-670 62-215 (278)
97 4ady_A RPN2, 26S proteasome re 81.8 11 0.00038 44.1 13.1 78 470-554 622-699 (963)
98 2of3_A ZYG-9; multifunctional 80.2 17 0.00058 35.7 12.1 140 429-576 100-243 (266)
99 3nmw_A APC variant protein; AR 79.2 6.7 0.00023 40.7 9.5 99 430-532 232-337 (354)
100 3grl_A General vesicular trans 77.6 24 0.00082 39.3 13.5 100 609-709 137-243 (651)
101 2of3_A ZYG-9; multifunctional 77.2 25 0.00086 34.4 12.3 165 511-702 57-231 (266)
102 4gmo_A Putative uncharacterize 74.2 15 0.00052 42.0 11.6 59 469-531 43-107 (684)
103 1vsy_4 Proteasome activator BL 74.1 1.3E+02 0.0046 34.7 20.6 70 497-568 336-408 (799)
104 2fv2_A RCD1 required for cell 71.9 74 0.0025 30.7 16.5 184 2-209 1-224 (268)
105 3fga_B Serine/threonine-protei 67.8 83 0.0028 32.8 14.1 48 614-663 271-318 (403)
106 1upk_A MO25 protein; transfera 64.4 86 0.0029 31.7 12.9 140 48-208 88-237 (341)
107 3opb_A SWI5-dependent HO expre 63.5 2.1E+02 0.0071 32.8 19.4 206 477-710 153-365 (778)
108 3fga_B Serine/threonine-protei 63.4 1.5E+02 0.005 30.9 17.0 119 433-557 188-307 (403)
109 4ady_A RPN2, 26S proteasome re 61.6 31 0.0011 40.5 10.4 102 471-587 589-694 (963)
110 2npp_B PP2A, B subunit, serine 60.9 1.7E+02 0.0059 30.9 15.8 121 431-557 219-340 (449)
111 2npp_B PP2A, B subunit, serine 59.3 32 0.0011 36.5 9.3 264 496-809 132-411 (449)
112 3d9j_A RNA-binding protein 16; 51.2 82 0.0028 27.5 9.2 89 500-594 5-100 (145)
113 1vsy_5 Proteasome activator BL 49.7 1.1E+02 0.0039 36.4 12.9 126 455-587 797-944 (997)
114 2jak_A Serine/threonine-protei 48.3 2.5E+02 0.0086 29.0 13.9 49 613-663 315-363 (392)
115 2jak_A Serine/threonine-protei 46.5 2.7E+02 0.0091 28.8 15.8 119 430-554 230-349 (392)
116 3tt9_A Plakophilin-2; cell adh 46.4 23 0.0008 34.0 5.3 109 463-572 11-123 (233)
117 3jxy_A Alkylpurine DNA glycosy 42.2 38 0.0013 32.4 6.2 128 386-542 77-206 (232)
118 4atg_A TAF6; transcription, TF 41.2 1.5E+02 0.0053 27.3 9.7 82 694-780 62-144 (196)
119 2b3g_B Cellular tumor antigen 40.8 11 0.00037 21.3 1.1 13 354-366 10-22 (28)
120 4gmo_A Putative uncharacterize 40.5 1.4E+02 0.0048 33.9 11.6 27 505-531 39-65 (684)
121 2b6c_A Hypothetical protein EF 39.6 26 0.00087 33.4 4.4 129 385-541 70-198 (220)
122 1juq_A ADP-ribosylation factor 33.2 2.7E+02 0.0091 25.0 10.0 108 457-573 14-132 (171)
123 1upk_A MO25 protein; transfera 31.3 1.2E+02 0.004 30.7 7.6 74 457-532 207-286 (341)
124 3dad_A FH1/FH2 domain-containi 30.6 2.6E+02 0.0089 28.2 10.0 113 545-669 120-233 (339)
125 2fv2_A RCD1 required for cell 30.5 3.8E+02 0.013 25.9 10.8 139 431-595 71-224 (268)
126 1vsy_5 Proteasome activator BL 29.7 1.1E+02 0.0038 36.4 8.5 96 54-157 817-929 (997)
127 1lsh_A Lipovitellin (LV-1N, LV 28.6 5.3E+02 0.018 30.9 14.4 165 386-583 411-586 (1056)
128 4atg_A TAF6; transcription, TF 27.5 2.3E+02 0.008 26.0 8.5 67 38-113 89-156 (196)
129 3oc3_A Helicase MOT1, MOT1; re 23.5 3.8E+02 0.013 29.4 10.1 118 19-153 243-366 (800)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.3e-82 Score=776.24 Aligned_cols=785 Identities=18% Similarity=0.258 Sum_probs=654.2
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
|.++|.++|.+++|||+++| ||++|++++++|||+.+|++++.+++.+.++|++|+++|||.|+++|+..++ ...+
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~--~~~l 78 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG--NHLL 78 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS--CBSS
T ss_pred cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc--CCCC
Confidence 47899999999999999988 9999999999999999999999988889999999999999999999986432 2459
Q ss_pred ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc--
Q 003214 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF-- 156 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~-- 156 (838)
++++|..||+.+++++.++++.||++++.+|+.|+++|||++||++++.+++.++++ ..+++|.+|+.+++++++
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988889999999999999999999999999999999999877 679999999999998875
Q ss_pred CCccCcchHHHHHHHHhHHHHHHHHHH---hcccCCc----hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003214 157 KSDEERTPVYRIVEETFHHLLNIFNRL---VQIVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (838)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~---~~~~~~~----~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (838)
++++.+.++..++..++|.++++|... +++..++ ....++++.++|+|++++.+++|+.+. +++..|++.+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~~~~~ 236 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMGIF 236 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHHHHHH
Confidence 333445566777888899998888765 3322211 223567788999999988888898764 7899999999
Q ss_pred HHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003214 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 (838)
Q Consensus 230 ~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~ 309 (838)
.+++....|.. ..|+++++..+++++|||+++++.+++++|++ .| .++++.+++.+|+.+....
T Consensus 237 ~~~l~~~~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~-------------~f-~~~~~~~~~~~~~~l~~~~ 300 (960)
T 1wa5_C 237 HKYLSYSNPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED-------------VF-GPMINEFIQITWNLLTSIS 300 (960)
T ss_dssp HHHHSCCSCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH-------------HH-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCCcc--cCCcccccccHHHHHHHHHHHHHHHHHHHHHH-------------HH-HHHHHHHHHHHHHHHHhcC
Confidence 99998754421 22333445667899999999999999998742 12 3577889999999887533
Q ss_pred CCcccCHHHHHHHHHHHHhhcCcchhhhhch--hhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHH
Q 003214 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 387 (838)
Q Consensus 310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~--~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r 387 (838)
..+..++++.++++||.++++.+..++.++ +++..++..+++|+|+++++|++.|++||+||++++.|+ +|.+++|
T Consensus 301 -~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s~R 378 (960)
T 1wa5_C 301 -NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRR 378 (960)
T ss_dssp -SCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHH
T ss_pred -CCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCc-ccccCcH
Confidence 235688999999999999999888888887 899999988999999999999999999999999988763 4568999
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC-cc-----hHHHHHHH
Q 003214 388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PY-----KSELERML 461 (838)
Q Consensus 388 ~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~-~~-----~~~~~~~l 461 (838)
.+|.+++..++..+++.+++.+++++.+.++++.+++. .+|+.|||+++++|+++++..... .. ..++++++
T Consensus 379 ~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 379 RACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 99999999999999988999999999999988765442 489999999999999997642111 11 12688998
Q ss_pred hhcccccccCC---CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc------
Q 003214 462 VQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------ 532 (838)
Q Consensus 462 ~~~v~p~l~~~---~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~------ 532 (838)
.++++|.++++ +|++|+||||++|+|+++. .++.+..+++.++++|.|++++||.+||.||.+|++...
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~ 534 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA 534 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccc
Confidence 88899999877 9999999999999999864 567899999999999999999999999999999998521
Q ss_pred ---cccccccchHHHHHHHHHHhhhh--------chhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCC
Q 003214 533 ---DLNEIRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE 601 (838)
Q Consensus 533 ---~~~~l~p~l~~il~~L~~ll~~~--------~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~ 601 (838)
.++.+.||++++++.|+.++++. +.+.++.+|+.++..+++++.||+..+++.|...+.+.+++ +
T Consensus 535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~----~ 610 (960)
T 1wa5_C 535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN----P 610 (960)
T ss_dssp BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS----C
T ss_pred ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC----C
Confidence 35779999999999999999986 56679999999999999999999999999999865554332 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHH
Q 003214 602 DADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP 681 (838)
Q Consensus 602 ~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~ 681 (838)
++ ..+...++++|+.++++ ..++.+..+++.++|++..+++++..+|.+++++++..+++..++++|.+|++||
T Consensus 611 ---~~-~~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 684 (960)
T 1wa5_C 611 ---SN-PRFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQ 684 (960)
T ss_dssp ---CC-HHHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHH
T ss_pred ---CC-cHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 12 34457899999999998 4556778899999999999999999999999999999999877889999999999
Q ss_pred HHH--HHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc
Q 003214 682 LMM--EALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG 759 (838)
Q Consensus 682 ~l~--~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~ 759 (838)
.++ +.++.. .+++.+.++|.+|+..+++.+.+ ++.+++++.+++.++. .+ ..++.+++.++.++++
T Consensus 685 ~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~-~~---~~a~~ll~~i~~~~~~ 752 (960)
T 1wa5_C 685 PLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKA-YE---VHGFDLLEHIMLLIDM 752 (960)
T ss_dssp HHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTT-TH---HHHHHHHHHHHHHSCH
T ss_pred HHcCHHHhcCC--CCchhHHHHHHHHHHhChHHHHH------HHHHHHHHHHHhCCCc-cc---chHHHHHHHHHHHCCH
Confidence 998 776543 49999999999999999988772 5668888888887543 21 5799999999999999
Q ss_pred C-cccchHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHhhccChHHHHHHHHhcC--ch-HHHHHHHHHhhhhhhhcCccc
Q 003214 760 Q-VDHWVEPYLRITVERLRRAEKSYLK-CLLVQVIADALYYNSSLTLSILHKLG--VA-TEVFNLWFQMLQQVKKNGLRV 834 (838)
Q Consensus 760 ~-~~~~l~~il~~~l~~l~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~L~~~~--~~-~~~~~~w~~~~~~~~~~~~rK 834 (838)
+ +.||++.++..++++++..+++.++ ..+..+...++.++|+.+++.|++++ .. ..+++.|+++++++++.+|||
T Consensus 753 ~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk 832 (960)
T 1wa5_C 753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRK 832 (960)
T ss_dssp HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHH
Confidence 8 9999999999999999887555555 55566666677899999999999885 23 335579999999999999999
Q ss_pred cC
Q 003214 835 NF 836 (838)
Q Consensus 835 ~~ 836 (838)
+.
T Consensus 833 ~~ 834 (960)
T 1wa5_C 833 IA 834 (960)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.9e-49 Score=479.32 Aligned_cols=733 Identities=15% Similarity=0.182 Sum_probs=546.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHh-cCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVD-NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 3 ~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~-~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
.++|.++|++++|||+++|++||++|++++++|+|+.+|+.++.+ .+.+..+|++|+++|||.|+++|.. +
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~--------~ 83 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN--------F 83 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG--------C
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC--------C
Confidence 578999999999999999999999999999999999999999985 5678999999999999999999985 9
Q ss_pred ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccCC
Q 003214 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKS 158 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~ 158 (838)
++++|..||+.+++++.++++.||++++.+++.|++.|+|+.||++++.+++.++++ ..++++.+|..+++++....
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 84 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 999999999999999999999999999999999999999999999999999999887 46899999999999874311
Q ss_pred ccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCC
Q 003214 159 DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVP 238 (838)
Q Consensus 159 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (838)
+. ..+...++.++|.+.+.+ ++. ...++..+++++..++.. .+..+. +.+..+++.+...++.
T Consensus 164 ~~--~~~~~~~~~il~~l~~~l----~~~-----~~~vR~~A~~aL~~~~~~-~~~~~~--~~~~~~l~~l~~~~~d--- 226 (852)
T 4fdd_A 164 DS--DVLDRPLNIMIPKFLQFF----KHS-----SPKIRSHAVACVNQFIIS-RTQALM--LHIDSFIENLFALAGD--- 226 (852)
T ss_dssp HH--CSSSSCHHHHHHHHTTTT----TCS-----SHHHHHHHHHHHHTTTTT-TCHHHH--TSHHHHHHHHHHHHTC---
T ss_pred ch--hhhcchHHHHHHHHHHHh----cCC-----CHHHHHHHHHHHHHHHhc-ccHHHH--HHHHHHHHHHHHHcCC---
Confidence 00 011112334455544432 222 346788888888755431 222111 2344455555444432
Q ss_pred CCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCHHH
Q 003214 239 SEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRV 318 (838)
Q Consensus 239 ~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (838)
.| ..+++++++++..+...+++ +..++++.+++.++..+.. .++.+
T Consensus 227 -----~~---------~~vr~~a~~~L~~l~~~~~~--------------~~~~~l~~l~~~l~~~~~~------~~~~v 272 (852)
T 4fdd_A 227 -----EE---------PEVRKNVCRALVMLLEVRMD--------------RLLPHMHNIVEYMLQRTQD------QDENV 272 (852)
T ss_dssp -----CC---------HHHHHHHHHHHHHHHHHCHH--------------HHGGGHHHHHHHHHHHHTC------SSHHH
T ss_pred -----CC---------HHHHHHHHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHccC------CcHHH
Confidence 12 25788999999999886531 2334566677777765532 35789
Q ss_pred HHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHH
Q 003214 319 TNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELV 398 (838)
Q Consensus 319 ~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~ 398 (838)
+..+++||.++++.+..++.+++++..++.. +++.|.++++|.+.|+.|+++.- ++|+..+.|++|.+|...+..++
T Consensus 273 r~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~-ll~~l~~~e~d~~~~~~d~~ed~--~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPV-LVNGMKYSDIDIILLKGDVEGGS--GGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTTHHHHHHH-HHHHTSCCHHHHHHHHC--------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHHHcCCcHhHHHHhcCCccccc--ccccccccchHHHHHHHHHHHHH
Confidence 9999999999998777777788888888865 55888899988776677765521 11111135899999999999999
Q ss_pred hhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhh
Q 003214 399 RKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRA 478 (838)
Q Consensus 399 ~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ 478 (838)
...|+.+++.+++++.+.+++ .+|+.|++++.++|.+++++.+. +...++.++ ..+.+.+.++++.+|.
T Consensus 350 ~~~~~~~~~~l~~~l~~~l~~--------~~~~~R~aa~~alg~i~~~~~~~--~~~~l~~~l-~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 350 NVYRDELLPHILPLLKELLFH--------HEWVVKESGILVLGAIAEGCMQG--MIPYLPELI-PHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHGGGGHHHHHHHHHHHHTC--------SSHHHHHHHHHHHHHTTTTTHHH--HGGGHHHHH-HHHHHHTTCSSHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcchHH--HHHHHHHHH-HHHHHHcCCCCHHHHH
Confidence 999988899999988888763 48999999999999999876542 122344444 4566778899999999
Q ss_pred HHHHHHHhhhcccc--CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc
Q 003214 479 KAAWVAGQYAHINF--SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (838)
Q Consensus 479 ra~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 556 (838)
.|+|++|++++... .....+..+++.++..+.|+++.||..|+.||..+++... +.+.||++.+++.|+.+++..+
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhC
Confidence 99999999987431 1224678999999999999889999999999999999864 5689999999999999998765
Q ss_pred hhh---HHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh-H
Q 003214 557 NED---LVFTLETIVDKFGEEMA--PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLP-H 630 (838)
Q Consensus 557 ~~~---l~~~l~~iv~~~~~~i~--p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~-~ 630 (838)
... +..+++.++...++.+. +|...+++.+.+ .|+.-.+++ ... . .++++++.++.+++..- .
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~----~~~~l~d~~-----~~~-~-~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ----KWNMLKDED-----KDL-F-PLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHH----HHHHSCTTC-----TTH-H-HHHHHHHHHHHHHGGGGHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHH----HHHhccccc-----HHH-H-HHHHHHHHHHHHHhHhHHH
Confidence 444 57788888887776653 366666655554 565433221 122 2 67999999999987532 2
Q ss_pred HHHHHHhhHHHHHHHHhc-------------cChhhHHHHHHHHHHHhhhcCC-CCCHhh--hHhHHHHHHHHhhhHhhh
Q 003214 631 LFVQIEPTLLPIMRRMLT-------------TDGQEVFEEVLEIVSYMTFFSP-TISLEM--WSLWPLMMEALADWAIDF 694 (838)
Q Consensus 631 ~~~~l~~~~~p~i~~~l~-------------~~~~~~~~~~l~ll~~~~~~~~-~~~~~l--~~l~~~l~~~~~~~~~~~ 694 (838)
....+.+.++..+...+. .+..++...+++.+..+++..+ .+.|.+ ..+++.++.++.+...+.
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~v 645 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhH
Confidence 233344445555555432 1134688888999998887553 344444 478888888886555667
Q ss_pred hhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHH
Q 003214 695 FPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE 774 (838)
Q Consensus 695 l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~ 774 (838)
.......+.......++.+. .|+..++..+.+.++.+ +...+..++..+..+..+++..+.||+..++..++.
T Consensus 646 r~~a~~~l~~l~~~~~~~~~-----~~l~~~lp~l~~~l~~~--~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 646 RQSSFALLGDLTKACFQHVK-----PCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTG-----GGHHHHHHHHHHTCCTT--SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 77888888888877777766 68888888888887532 112245688889999999988899999999999999
Q ss_pred HHhhh-hhhHHHHHHHHHHHHhhccChHHHHHHHHhcCchHHHHHHHHHhhhhhhhcCccc
Q 003214 775 RLRRA-EKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRV 834 (838)
Q Consensus 775 ~l~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~L~~~~~~~~~~~~w~~~~~~~~~~~~rK 834 (838)
.+.+. ....++......+.++...+|+.+-.. +.+|+..|+..+++.....||.
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~------l~~~~~~~~~~l~~~~d~~e~~ 773 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAPM------LQQFIRPWCTSLRNIRDNEEKD 773 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGG------HHHHHHHHHHHHHTSCSSHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHhCcc------HHHHHHHHHHHhccccccHHHH
Confidence 88764 345677778888889988898866543 5689999999998877666553
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=8.1e-46 Score=456.81 Aligned_cols=737 Identities=11% Similarity=0.151 Sum_probs=478.5
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (838)
||.+++.++|+++++||++.|++||++|++++++|+++..+.+++.+ +.+..+|++|+++|||.|+++|..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~-------- 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKL-------- 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCcc--------
Confidence 78999999999999999999999999999999999999999999976 458999999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHH
Q 003214 81 ISQVDKDMVRDHILVFVAQV---------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~~---------~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~ 149 (838)
+|+++|..||+.+++.+... ++.||++++.+++.|+++|||++||++++++++.++++ ....++.+|..
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL 163 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 99999999999999998542 47899999999999999999999999999999999754 34555666666
Q ss_pred HHHHcc-cCCc----cCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhh-hcCCcc--------
Q 003214 150 LSRKYE-FKSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPKQ-------- 215 (838)
Q Consensus 150 i~~~~~-~~~~----~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~-~~~p~~-------- 215 (838)
++++.. ++++ ..+.+++..+...+|.+++++...+.+.. ...++..+++|+.+++. .+.+..
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~----~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~ 239 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS----SSSLIVATLESLLRYLHWIPYRYIYETNILEL 239 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHH
Confidence 665442 1111 11223444555567777777776665332 24577888999977543 221110
Q ss_pred -----cCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHH-----------HHhCCCCCCC
Q 003214 216 -----LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLY-----------TRFGDLKLQN 279 (838)
Q Consensus 216 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~-----------~~~~~~~~~~ 279 (838)
+.+++....|++.+..+++...+. .+... . .++.++.-.++..+. ..|+.+...+
T Consensus 240 l~~~~l~~~~~~~~a~~~L~~i~~~~~~~----~~~~~--~---~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d 310 (1049)
T 3m1i_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIPQ----DNDLI--K---RQTVLFFQNTLQQIATSVMPVTADLKATYANANGND 310 (1049)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHCCCCT----TCHHH--H---HHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTH
T ss_pred HHHHhCCCHhHHHHHHHHHHHHHhCCCCc----chhhH--H---HHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcch
Confidence 112344456777777777664321 11000 0 134344333343322 2232221111
Q ss_pred hhh-HHHHHHHHH---Hh---------HHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcC----cchhhhhchhh
Q 003214 280 PEN-RAFAQMFQK---NY---------AGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS----KNSMYNLLQPR 342 (838)
Q Consensus 280 ~~~-~~f~~~f~~---~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~----~~~~~~~~~~~ 342 (838)
.++ ..+++.|.. .+ ..+.+..+++.+-.... ..++.+...+++||.++++ .+..+..+++.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~ 388 (1049)
T 3m1i_C 311 QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 111 233333211 11 11222333443322211 2267889999999999887 55666778899
Q ss_pred HHHHHHHhHhccccCChhhHhhhh-cCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcccc
Q 003214 343 LDVLLFEIVFPLMCFNDNDQKLWD-EDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYD 421 (838)
Q Consensus 343 l~~li~~~i~~~l~~~~~d~e~w~-~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~ 421 (838)
+..++.. +++.|.+.+ |. .|. +|+.|++++..++. |.++.|.++.++|..++...+..+++.+++.+.+.++.
T Consensus 389 l~~Lv~~-ll~~m~~~e-d~-~~~~dd~~e~~r~~~~d~-d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~-- 462 (1049)
T 3m1i_C 389 CSQLRLV-IIENMVRPE-EV-LVVENDEGEIVREFVKES-DTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG-- 462 (1049)
T ss_dssp HHHHHHH-HHHTCCCCT-TC-CEEECTTSCEEECSSCCH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHH-HHHhcCCCc-ce-eeeeCCCCcchHhhhccc-hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCC--
Confidence 9998865 668888754 33 454 46666666554432 34678999999999999888888888888877777652
Q ss_pred CCCCCCcchhhHhHHHHHHHHHHHHhhcC--CcchHHHHHHHhhccccccc---CCCcchhhHHHHHHHhhhccccCChh
Q 003214 422 ETPVEYKPYRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQN 496 (838)
Q Consensus 422 ~~~~~~~~~~~~ea~l~~lg~i~~~l~~~--~~~~~~~~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~~~ 496 (838)
+ ..+|+.+||+++++|++++.+.+. ..+...+.+++.. +|.+. +++|.+|.++||++|+|+++...+++
T Consensus 463 --~--~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~ 536 (1049)
T 3m1i_C 463 --S--EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1049)
T ss_dssp --S--SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH
T ss_pred --C--CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1 248999999999999999876432 1223344444433 23432 35788888999999999987555678
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc--------ccchHHHHHHHHHHhhhhchhh---HHHHHH
Q 003214 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI--------RPILPQLLDEFFKLMNEVENED---LVFTLE 565 (838)
Q Consensus 497 ~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l--------~p~l~~il~~L~~ll~~~~~~~---l~~~l~ 565 (838)
.+..+++.++.+|.+++++|+.+||.||.++++.+. ..+ .||++++++.+..++++.+.++ ++.++.
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999999899999999999999999874 333 5999999999999999876655 456666
Q ss_pred HHHHhhc--ccchhhHHHHHHHHHHHHHHHHhcccCCCCC--CChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHH
Q 003214 566 TIVDKFG--EEMAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLP 641 (838)
Q Consensus 566 ~iv~~~~--~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p 641 (838)
.++...+ +...||+..+++.+.+.+.++.++...++++ +.+..-....+++++..++.++++ .+.|
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~----------~f~p 684 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA----------DFYP 684 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG----------GGHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhH----------HHHH
Confidence 6666665 3467788888877776555544332211110 111111124567777777777763 2333
Q ss_pred HHHHHhccChhhHHHHHHHHHHHhhhcCCC---CCHh---hhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccc
Q 003214 642 IMRRMLTTDGQEVFEEVLEIVSYMTFFSPT---ISLE---MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLT 715 (838)
Q Consensus 642 ~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~---~~~~---l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~ 715 (838)
.+..++. +..+++.....++.......+. -.|. +..+.|.+.+++.. |...+ +.++... ..++
T Consensus 685 ~~~~i~~-~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~----~~~~~-~~l~~~~----~~~~- 753 (1049)
T 3m1i_C 685 QLGHIYY-NMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVET----YISKA-RNLDDVV----KVLV- 753 (1049)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH----HHHHC-SCHHHHH----HHTH-
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHH----HHHhC-CCHHHHH----HHHH-
Confidence 3333332 1112222222223222211111 1232 33455555554433 11111 2221110 1111
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHh-----h-hhhhHHHHHHH
Q 003214 716 CKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLR-----R-AEKSYLKCLLV 789 (838)
Q Consensus 716 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~-----~-~~~~~~~~~~l 789 (838)
++.++.+++.+.+.. ....+ ..++.+++.++..+++.+.++++.++..++++.. + ...+.++..++
T Consensus 754 ---~~~l~~ll~~~~~~~--~~~~~---~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f 825 (1049)
T 3m1i_C 754 ---EPLLNAVLEDYMNNV--PDARD---AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFY 825 (1049)
T ss_dssp ---HHHHHHHHHHHHHSC--GGGCC---THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCC--ccccc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHH
Confidence 245566666666521 11111 4699999999999998888999998888888752 2 35788999998
Q ss_pred HHHHHhhccChHHHH
Q 003214 790 QVIADALYYNSSLTL 804 (838)
Q Consensus 790 ~v~~~~~~~~~~~~~ 804 (838)
.++.+++-..|..++
T Consensus 826 ~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 826 KLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHHHHCTHHHH
T ss_pred HHHHHHHHhCHHHHH
Confidence 888887766665554
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=3.6e-43 Score=432.31 Aligned_cols=719 Identities=13% Similarity=0.185 Sum_probs=471.1
Q ss_pred CChHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCC
Q 003214 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (838)
Q Consensus 1 MD~~~l~~~L~~-~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~ 79 (838)
||.+++.++|++ ..++|++.|++||++|++++++|++|..+.+++.+ +.+..+|++|+++|||.|+++|..
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~------- 92 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSD------- 92 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGG-------
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHh-------
Confidence 358999999999 66799999999999999999999999999999865 568999999999999999999985
Q ss_pred CCChhhHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh------h--hHHHHHHHHH
Q 003214 80 KISQVDKDMVRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD------Q--QVYGALFVLR 148 (838)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~---~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s------~--~~~~~L~~L~ 148 (838)
+|+++|..||+.|++.+.+ +++.||++++.+++.|+++|||++||++++++++.+++ + ....++.+|.
T Consensus 93 -l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 93 -IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp -SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 9999999999999999865 47999999999999999999999999999999999986 3 4678888888
Q ss_pred HHHHHcccCC--ccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCc------------
Q 003214 149 ILSRKYEFKS--DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK------------ 214 (838)
Q Consensus 149 ~i~~~~~~~~--~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~------------ 214 (838)
.++++....+ .+.|..+...+...+|.+++++...+++..+. ..++..++||+.+++..+.+.
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~---~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~ 248 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP---SCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFA 248 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCC---HHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHH
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHcCCCCcccchHHHHHHHH
Confidence 8887542111 11122222233344566666666666443221 247778899997765432221
Q ss_pred ccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchh-----------H----HHHHHHHHHHHHHHhCCCCCCC
Q 003214 215 QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWK-----------V----KKWTVHILNRLYTRFGDLKLQN 279 (838)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k-----------~----kk~~~~~l~~l~~~~~~~~~~~ 279 (838)
.+.+++....++..+..++....+.. -... -..++. . ..+..+.+.+++..|+..
T Consensus 249 ~l~~~~~~~~a~~~l~~i~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~---- 318 (963)
T 2x19_B 249 ALQDSELFDSSVEAIVNAISQPDAQR----YVNT--LLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGEN---- 318 (963)
T ss_dssp HTTSTTTHHHHHHHHHHHHTCTTGGG----CHHH--HHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HhCCchHHHHHHHHHHHHHccccccc----CHHH--HHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence 11233556667777777776421100 0000 000000 0 011122222222222110
Q ss_pred hhhHHHHHHHHHHh-HHHHHHHHHHHHHhh-hC-Ccc-cCHHHHHHHHHHHHhhcCc---------chhhhhchhhHHHH
Q 003214 280 PENRAFAQMFQKNY-AGKILECHLNLLNRI-RV-GGY-LPDRVTNLILQYLSNSISK---------NSMYNLLQPRLDVL 346 (838)
Q Consensus 280 ~~~~~f~~~f~~~~-~~~~~~~~~~~l~~~-~~-~~~-~~~~~~~~~l~fl~~~~~~---------~~~~~~~~~~l~~l 346 (838)
....+.... .+..+..+++.+-.. .. +.| .++++...+++||..+++. +..+..+++.+..+
T Consensus 319 -----~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 393 (963)
T 2x19_B 319 -----HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQL 393 (963)
T ss_dssp -----HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 000111000 112223344433221 11 112 2456788999999988762 34455678888888
Q ss_pred HHHhHhccccCChhh-HhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCC
Q 003214 347 LFEIVFPLMCFNDND-QKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPV 425 (838)
Q Consensus 347 i~~~i~~~l~~~~~d-~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~ 425 (838)
+..++ +.+...+++ .+.|++|++ +++.+.|.++.+++..++...++.+++.+++++.+.++++.+
T Consensus 394 ~~~ll-~~~~~p~~~~~~~~~~de~----------~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~--- 459 (963)
T 2x19_B 394 VDVLL-HKAQFPSDEEYGFWSSDEK----------EQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE--- 459 (963)
T ss_dssp HHHHH-HHHSCCCHHHHHTSCHHHH----------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHH-HHHcCCCcccccCCChhHH----------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCC---
Confidence 86544 556553332 334443221 122346899999999999999988999999999888876521
Q ss_pred CCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHH
Q 003214 426 EYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSV 505 (838)
Q Consensus 426 ~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l 505 (838)
..+|+.+||+++++|++++++.+.. ...++.++. +++.+.+++|.+|.++||++|+|+++...+++.+..+++.+
T Consensus 460 -~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l~~--~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l 534 (963)
T 2x19_B 460 -PYSWQHTEALLYGFQSIAETIDVNY--SDVVPGLIG--LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLV 534 (963)
T ss_dssp -SCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHHHH--HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHH
T ss_pred -CCchHHHHHHHHHHHHHHhhcCchh--hHHHHHHHH--HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 2489999999999999999886532 123445443 34556667899999999999999987544567889999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh--chhh---HHHHHHHHHHhhc-ccchhhH
Q 003214 506 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV--ENED---LVFTLETIVDKFG-EEMAPYA 579 (838)
Q Consensus 506 ~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~--~~~~---l~~~l~~iv~~~~-~~i~p~~ 579 (838)
+..|++ ++|+.+||.||.++++.+ ++.+.||++++++.|..+++.. +.+. ++.+++.++...+ ++..||.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999976 689999999999999886 4779999999999999998852 2233 5677777776665 7788999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC-------------------ChHHHHHHHhhHH
Q 003214 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-------------------LPHLFVQIEPTLL 640 (838)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~-------------------~~~~~~~l~~~~~ 640 (838)
..+++.+.+.+.++.++. .+ ++........+++++.++++++. .+..+..+.+.++
T Consensus 611 ~~l~~~l~~~l~~~~~~~-~~----~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEI-PN----PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHHHHHHHHHHHHHSSC-SC----HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CC----HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence 999988887554443221 11 12223456789999999999863 1233566788999
Q ss_pred HHHHHHhccC--hhhHHHHHHHHHHHhhhcC-CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhc--cCcccccc
Q 003214 641 PIMRRMLTTD--GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYIS--RGTAHFLT 715 (838)
Q Consensus 641 p~i~~~l~~~--~~~~~~~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~--~~~~~~l~ 715 (838)
|.+..+++.. ..+..+.++.++..++... +.+.|.+..+++.++..... .-.+.++.++..++. ...+.+..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST---IPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH---SCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc---CCccHHHHHHHHHHHHhCCCcchHH
Confidence 9999988753 3578899999999887543 34455544555544443322 113345555555544 22211110
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCCc-cCchhHHHHHHHHHcccCc--ccc-hHHHHHHHHHHHhh
Q 003214 716 CKEPDYQQSLWSMVSSIMADKNLEDGD-IEPAPKLIEVVFQNCKGQV--DHW-VEPYLRITVERLRR 778 (838)
Q Consensus 716 ~~~~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~ll~~i~~~~~~~~--~~~-l~~il~~~l~~l~~ 778 (838)
.-+..++.++...-.++...-.+..+ ....+.++..++.+++..+ .+. ++.++..++..+..
T Consensus 763 -~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 828 (963)
T 2x19_B 763 -PIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF 828 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 00022233333322233211111122 3568899999999988763 354 77788877777754
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-43 Score=436.37 Aligned_cols=632 Identities=14% Similarity=0.194 Sum_probs=405.6
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (838)
||++++.++++.+++||++.|++||++|++++++|++|..+.+++.. +.+..+|++|+++|||.|+++|..
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~-------- 74 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHE-------- 74 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhh--------
Confidence 46789999999999999999999999999999999999999999965 568999999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh-------h--hHHHHHHHHH
Q 003214 81 ISQVDKDMVRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD-------Q--QVYGALFVLR 148 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~---~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s-------~--~~~~~L~~L~ 148 (838)
+|+++|..||+.+++.+.+ +++.||++++.+++.|++++|| .||++++++++.+++ + ....++.+|.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~ 153 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLT 153 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999865 3799999999999999999999 999999999999987 3 4577888888
Q ss_pred HHHHHc-ccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCC---chhHHHHHHHHHHHhHHhhhh-cCCcccCChhhHH
Q 003214 149 ILSRKY-EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNP---SLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFN 223 (838)
Q Consensus 149 ~i~~~~-~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~lki~~~~~~~-~~p~~~~~~~~~~ 223 (838)
.++++. +++....|..+...+...+|.+++++...++.... +.....++..+++|+..++.+ .+|.. ...
T Consensus 154 ~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-----~~~ 228 (971)
T 2x1g_F 154 AIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-----GCV 228 (971)
T ss_dssp HHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-----GHH
T ss_pred HhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-----ccc
Confidence 888653 22222234445556666677777777666543211 112236788899999887764 45543 224
Q ss_pred HHHHHHHHHh-----cCCCCCC-CCCCChhhhhhccchhHHHHHHHHHHHHH-----------------------HHhCC
Q 003214 224 AWMILFLNVL-----ERPVPSE-GEPADPEQRKSWGWWKVKKWTVHILNRLY-----------------------TRFGD 274 (838)
Q Consensus 224 ~~~~~~~~~l-----~~~~~~~-~~~~d~~~~~~~~~~k~kk~~~~~l~~l~-----------------------~~~~~ 274 (838)
.+++.+.. + ....... +...+++. .++..+++++..++ ..+..
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADEN-------ELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITK 300 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHH-------HHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCc-------HHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHH
Confidence 44444443 2 0000000 00000000 01111111111111 11100
Q ss_pred C-CCCC----hhhHHHHHHHH---H------------------HhHHHHHHHHHHHHHhhhCCcc-cCHHHHHHHHHHHH
Q 003214 275 L-KLQN----PENRAFAQMFQ---K------------------NYAGKILECHLNLLNRIRVGGY-LPDRVTNLILQYLS 327 (838)
Q Consensus 275 ~-~~~~----~~~~~f~~~f~---~------------------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~fl~ 327 (838)
. ...+ .....+++.|. . .+...+++.++..... .+.+ .++++...+++||.
T Consensus 301 ~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~~~~~~~~~v~~~~l~fw~ 378 (971)
T 2x1g_F 301 TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDK--PGIYPVEESCSTMALAFWY 378 (971)
T ss_dssp HHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC--SSCTTTTCTTHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcC--CCCCCcchhhhHHHHHHHH
Confidence 0 0001 11122222211 1 1112222222222211 1111 36788999999998
Q ss_pred hhcC----------cchhhhhchhhHHHHHHHhHhccccCC-hhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHH
Q 003214 328 NSIS----------KNSMYNLLQPRLDVLLFEIVFPLMCFN-DNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 396 (838)
Q Consensus 328 ~~~~----------~~~~~~~~~~~l~~li~~~i~~~l~~~-~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~ 396 (838)
++++ .+..+..+++.+..++..++.+ +.+. ++|.+.| |++| + +++.+.|.++.+++..
T Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~p~~~~~~~~--d~~e--~------~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 379 MLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK-SEQPDEKSLAKW--SSDD--L------ECFRCYRQDISDTFMY 447 (971)
T ss_dssp HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH-TSCCCTTTTSCS--CHHH--H------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc--CHhH--H------HHHHHHHHHHHHHHHH
Confidence 8754 1234556788888888876654 4443 2233334 5544 1 2345689999999999
Q ss_pred HHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc--CCCc
Q 003214 397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVG 474 (838)
Q Consensus 397 l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~--~~~~ 474 (838)
++..+|+.+++.+++++.+.++++..++ .+|+.+||+++++|++++++.+.. ...++.++. +++.+. +++|
T Consensus 448 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~---~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~--~l~~l~~~d~~~ 520 (971)
T 2x1g_F 448 CYDVLNDYILEILAAMLDEAIADLQRHP---THWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMR--VLAEIPYEKLNV 520 (971)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHTTTC--------CHHHHHHH--HHHHSCTTTSCH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHH--HHHhcCccccCH
Confidence 9999998899999999999887654332 489999999999999999887532 234556554 556666 3589
Q ss_pred chhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003214 475 HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (838)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (838)
.+|.++||++|+|+++...+++.+..+++.++.+| + ++|+.+||.|+.++++.+ .+.+.||++++++.+..+++.
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcC
Confidence 99999999999999876555678899999999999 4 789999999999999887 477999999999999999987
Q ss_pred --hchhh---HHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC
Q 003214 555 --VENED---LVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL 628 (838)
Q Consensus 555 --~~~~~---l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~ 628 (838)
.+.+. ++.++..++...+ ++..||+..+++.+.+.+.++.++...+ ++.......++++++.++++++..
T Consensus 596 ~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~----~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 596 GRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT----PAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C----HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----hhhHHHHHHHHHHHHHHHhhcCCC
Confidence 33333 5666666666554 6778888888888887655554432111 112234457888999999988642
Q ss_pred ----------hHHHHHHHhhHHHHHHHHhccC--hhhHHHHHHHHHHHhhhc-CCCCCHhhhHhHHHHH
Q 003214 629 ----------PHLFVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFF-SPTISLEMWSLWPLMM 684 (838)
Q Consensus 629 ----------~~~~~~l~~~~~p~i~~~l~~~--~~~~~~~~l~ll~~~~~~-~~~~~~~l~~l~~~l~ 684 (838)
++.+..+.+.++|++..+++.. ..++.++++.++..++.. .+.+.|.++.+++.+.
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 3345567788999999888653 457788888888775542 2344555555555443
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.2e-42 Score=421.37 Aligned_cols=692 Identities=14% Similarity=0.216 Sum_probs=489.8
Q ss_pred CChHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCC-
Q 003214 1 MDLPSLALILQGA-LSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPN- 76 (838)
Q Consensus 1 MD~~~l~~~L~~~-ls~d~~~r~~Ae~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~- 76 (838)
||++++.++|+++ +|||++.|++||++|++++++ |+|+..|++++.+.+.+..+|++|+++|||.|+++|....+.
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 9999999999999 999999999999999999885 999999999998866789999999999999999999653221
Q ss_pred --CCCC-CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh----hHHHHHHHHH
Q 003214 77 --EQQK-ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLR 148 (838)
Q Consensus 77 --~~~~-l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~----~~~~~L~~L~ 148 (838)
.|.. +++++|..||+.+++.+.++++.+|++++.+++.|++.+|| +.||++++.+++.++++ ..++++.+|.
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~ 160 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1333 99999999999999999999999999999999999999999 59999999999999874 3588999999
Q ss_pred HHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHH
Q 003214 149 ILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMIL 228 (838)
Q Consensus 149 ~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (838)
.+++++.. +.+ .+....+.+++.+.. .+.+.. ....++..+++++..++.+ +...+.........++.
T Consensus 161 ~l~~~~~~---~~~-~~~~~~~~ll~~l~~----~l~~~~---~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 161 YMCESADP---QSQ-ALVSSSNNILIAIVQ----GAQSTE---TSKAVRLAALNALADSLIF-IKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHTSST---TSS-TTGGGHHHHHHHHHH----HHSTTC---CCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHH
T ss_pred HHHHcCCh---hhh-HHHHHHHHHHHHHHH----hhcCCC---CCHHHHHHHHHHHHHHHHH-HHHHccChhHHHHHHHH
Confidence 99997632 111 112223334444433 333221 1356788899999876532 11111100011122333
Q ss_pred HHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHH-HHHHHHHHHHHh
Q 003214 229 FLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNR 307 (838)
Q Consensus 229 ~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~l~~ 307 (838)
+...++. .+ +++++++++++.++...+++. + .++++ .+++.++..+.
T Consensus 229 l~~~~~~--------~~---------~~~r~~a~~~l~~l~~~~~~~-------------~-~~~l~~~l~~~~~~~~~- 276 (861)
T 2bpt_A 229 VCEATQA--------ED---------IEVQAAAFGCLCKIMSKYYTF-------------M-KPYMEQALYALTIATMK- 276 (861)
T ss_dssp HHHHHTC--------SC---------HHHHHHHHHHHHHHHHHHGGG-------------C-HHHHHHTHHHHHHHHTT-
T ss_pred HHHHhcC--------CC---------HHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHc-
Confidence 3322211 11 468899999999999887531 1 11223 34443333321
Q ss_pred hhCCcccCHHHHHHHHHHHHhhcCcchhh---------------hhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHH
Q 003214 308 IRVGGYLPDRVTNLILQYLSNSISKNSMY---------------NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEY 372 (838)
Q Consensus 308 ~~~~~~~~~~~~~~~l~fl~~~~~~~~~~---------------~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~ef 372 (838)
...++++..+++||..+++..... +.+++.+..++..++ ..+ ++.+ +|
T Consensus 277 -----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll-~~l--~~~~-----~d---- 339 (861)
T 2bpt_A 277 -----SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL-NLL--TRQN-----ED---- 339 (861)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH-HHT--TCCC-----CC----
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH-HHH--Hhcc-----cc----
Confidence 135789999999999887653211 122334444444332 332 2221 11
Q ss_pred HHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc
Q 003214 373 VRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP 452 (838)
Q Consensus 373 i~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~ 452 (838)
++++.+++|.+|.+++..++..+|+.+++.+++++.+.+++ .+|+.|++++.++|.+++++... .
T Consensus 340 ------~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~ 404 (861)
T 2bpt_A 340 ------PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA--------DNWRNREAAVMAFGSIMDGPDKV-Q 404 (861)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-H
T ss_pred ------cccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC--------CChhHHHHHHHHHHHHHcCCCHH-H
Confidence 01234789999999999999999988899999988888763 47999999999999998765311 1
Q ss_pred chHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhcccc---CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 003214 453 YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (838)
Q Consensus 453 ~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~ 529 (838)
+...++.++ ..+.+.+.++++.+|.+++|++|++++... .+...+..+++.++..++|+ +.||..||.|+..+++
T Consensus 405 ~~~~l~~il-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 405 RTYYVHQAL-PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHHH-HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 223344433 345566778899999999999999987531 12356899999999999886 7899999999999998
Q ss_pred hcc--cccccccchHHHHHHHHHHhhhhchh-----hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhc--ccCC
Q 003214 530 ACR--DLNEIRPILPQLLDEFFKLMNEVENE-----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT--AEAD 600 (838)
Q Consensus 530 ~~~--~~~~l~p~l~~il~~L~~ll~~~~~~-----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~--~~~d 600 (838)
... ..+.+.||++.+++.|+.+++..+.+ ....+++.++...++++.||...+++.+...+.+.... ....
T Consensus 483 ~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp HHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred hcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 863 14778999999999999999854421 36788999999999999999998888887754433110 0000
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChh-hHHHHHHHHHHHhhhcC-CCCCHhhhH
Q 003214 601 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWS 678 (838)
Q Consensus 601 ~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~-~~~~~~l~ll~~~~~~~-~~~~~~l~~ 678 (838)
+++++.....+..+++++..++..++.. +.+..+.++|.+...++.... ...+.++..+..++... ..+.|.+..
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~ 639 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSS---VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGG---TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0000112334567899999999998752 223446788888888776655 78889998888887654 346677788
Q ss_pred hHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcc
Q 003214 679 LWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK 758 (838)
Q Consensus 679 l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~ 758 (838)
++|.+.+.+.+...+.....+.++...+...++.+. +|...++..+.+.+.+++.+......++..+..++..++
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR-----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGH-----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhcc-----chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 888888887543444555566666666655555444 678888887777776543223335678899999999999
Q ss_pred cCcccchHHHHHHHHHHHhh
Q 003214 759 GQVDHWVEPYLRITVERLRR 778 (838)
Q Consensus 759 ~~~~~~l~~il~~~l~~l~~ 778 (838)
..+.+|++.++..+++.+..
T Consensus 715 ~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 715 ADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 88999999999888887763
No 7
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=9.9e-39 Score=383.58 Aligned_cols=732 Identities=12% Similarity=0.157 Sum_probs=442.0
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (838)
||+++|.++++.+++|+++.|++|+++|++++++|++|..+.+++.+ +.+..+|++|+++|||+|+++|..
T Consensus 13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~-------- 83 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKL-------- 83 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGG--------
T ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhc--------
Confidence 89999999999999999999999999999999999999999999965 458899999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHH
Q 003214 81 ISQVDKDMVRDHILVFVAQ---V------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~---~------~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~ 149 (838)
+|+++|..||+.+++.+.. + ++.++++++.+++.|++++||++||++++++++.++++ ....+|.+|..
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~ 163 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL 163 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999998843 1 46788999999999999999999999999999999876 56677777777
Q ss_pred HHHHcc-cCCc----cCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCc-cc-------
Q 003214 150 LSRKYE-FKSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QL------- 216 (838)
Q Consensus 150 i~~~~~-~~~~----~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~-~~------- 216 (838)
+.++.. +.++ ..+..+...+...+|.+.+++...+++.. ..++...+++|+.+++.- +|- .+
T Consensus 164 L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~----~~~l~~~~L~~l~s~l~W-I~i~~i~~~~ll~ 238 (1023)
T 4hat_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA----SSSLIVATLESLLRYLHW-IPYRYIYETNILE 238 (1023)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTT-SCTHHHHSSSHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHh-CCHHHhcchhHHH
Confidence 777632 2211 12345666777778888888887775432 124567788888776531 111 11
Q ss_pred -------CChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHH-----------HHHhCCCCCC
Q 003214 217 -------LDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRL-----------YTRFGDLKLQ 278 (838)
Q Consensus 217 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l-----------~~~~~~~~~~ 278 (838)
.+++....-++.+..+++...| .+...-. . .+....-..+..+ ...|......
T Consensus 239 ~l~~~~L~~~~~r~~A~ecL~eIv~~~~~-----~~~~~~~-~---~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~ 309 (1023)
T 4hat_C 239 LLSTKFMTSPDTRAITLKCLTEVSNLKIP-----QDNDLIK-R---QTVLFFQNTLQQIATSVMPVTADLKATYANANGN 309 (1023)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHTSCCC-----SSCHHHH-H---HHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHccccC-----CchHHHH-H---HHHHHHHHHHHHHHHHhCCCcchHHHHHhccccc
Confidence 1112222223344444442211 1100000 0 0100000111111 1112110000
Q ss_pred Chhh-HHHHHHHH---HHhH---------HHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCc----chhhhhchh
Q 003214 279 NPEN-RAFAQMFQ---KNYA---------GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISK----NSMYNLLQP 341 (838)
Q Consensus 279 ~~~~-~~f~~~f~---~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~----~~~~~~~~~ 341 (838)
+.+. ..++..|. +.+. .+++......+-... ...+.++...+++||+...+. +..+..++|
T Consensus 310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~--~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~ 387 (1023)
T 4hat_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS--KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEE 387 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 1111 12222221 1111 122222122221111 123557789999999987652 112345788
Q ss_pred hHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhccccc---ccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhc
Q 003214 342 RLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIE---DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFK 418 (838)
Q Consensus 342 ~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~---d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~ 418 (838)
.+..++..+ +..|.+.++++ .+++|-.+++++..++.+ .+.+.| ++|..++...+.++++.+++.+.+.+.
T Consensus 388 ~~~~L~~vl-i~km~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 388 ICSQLRLVI-IENMVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp HHHHHHHHH-HHSCCCCTTCC-EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HHhcCCCcccc-cCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 888887764 47788776432 334443333333221111 122344 778888777677777777776655544
Q ss_pred cccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-----CCCcchhhHHHHHHHhhhccccC
Q 003214 419 RYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAAWVAGQYAHINFS 493 (838)
Q Consensus 419 ~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~-----~~~~~lr~ra~~~l~~~~~~~~~ 493 (838)
. + ..+|+.+||+++|+|++++++.+.. ....+..++. .++.... ++.+.+|..+||++|+|++|.-.
T Consensus 462 ~----~--~~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~-~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~ 533 (1023)
T 4hat_C 462 G----S--EWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIK-DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1023)
T ss_dssp S----T--TCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred C----C--CCCHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHH-HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence 2 1 2489999999999999998875421 1112222222 2222222 24567888999999999998645
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc------cccccccchHHHHHHHHHHhhhhchhh---HHHHH
Q 003214 494 DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPILPQLLDEFFKLMNEVENED---LVFTL 564 (838)
Q Consensus 494 ~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~------~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l 564 (838)
+++.++.+++.++..|.++++.|+.+||.|+.++++++. ......||++++++.+.......+.+. +.+++
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 678899999999999998888899999999999999985 122346899999999999887665544 66777
Q ss_pred HHHHHhhccc--chhhHHHHHHHHHHHHHHHHhcccCCCCC--CChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHH
Q 003214 565 ETIVDKFGEE--MAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLL 640 (838)
Q Consensus 565 ~~iv~~~~~~--i~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~ 640 (838)
+.++...+.. ...+...+++.+...+.++.++...+++- |.+.......+++|.+.+..+++. .+.
T Consensus 614 ~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~----------~f~ 683 (1023)
T 4hat_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA----------DFY 683 (1023)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG----------GGH
T ss_pred HHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH----------HHH
Confidence 7777776533 22355555555555444433322223321 111112234567777777777653 222
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcc--cccccCC
Q 003214 641 PIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTA--HFLTCKE 718 (838)
Q Consensus 641 p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~--~~l~~~~ 718 (838)
|.+..+. ++...++...-+.++..+...+.... ..-.-+.+++ ...++++++..|+.+.++ .+.+.--
T Consensus 684 ~~~~~i~-~~~l~~y~~~s~~i~~~~~~~g~~~~--~~~~~r~~r~-------ik~~il~l~~~~i~~~~~~~~~~~~~~ 753 (1023)
T 4hat_C 684 PQLGHIY-YNMLQLYRAVSSMISAQVAAEGLIAT--KTPKVRGLRT-------IKKEILKLVETYISKARNLDDVVKVLV 753 (1023)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHCGGGG--GSHHHHHHHH-------HHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhh--ccHHHHHHHH-------HHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 3333222 11122333333333333322211100 0001112222 334677777777776643 1111000
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHH----Hhh--hhhhHHHHHHHHHH
Q 003214 719 PDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVER----LRR--AEKSYLKCLLVQVI 792 (838)
Q Consensus 719 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~----l~~--~~~~~~~~~~l~v~ 792 (838)
++.++.++..+.+.. +..-+ ..++.+...++.+++..+.+.++.|+++++.. +++ .+.|..+..+...+
T Consensus 754 ~~l~~~vl~dY~~~~--~~~r~---~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll 828 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNV--PDARD---AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLL 828 (1023)
T ss_dssp HHHHHHHHHHHHHSC--GGGCC---HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--hhhcc---HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 134444555444432 21112 46899999999999988888888888877543 333 46778877776665
Q ss_pred HHhh
Q 003214 793 ADAL 796 (838)
Q Consensus 793 ~~~~ 796 (838)
.++.
T Consensus 829 ~~~~ 832 (1023)
T 4hat_C 829 KVIN 832 (1023)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2e-37 Score=378.30 Aligned_cols=676 Identities=15% Similarity=0.208 Sum_probs=471.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhh-----------hcCC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIA-----------KNWA 71 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~-----------~~W~ 71 (838)
+|.++|++++|||+++|++|+++|+++..+ |+|+..|++++.+++.+..+|++|+++|||.|. ++|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 477999999999999999999999999886 999999999998866789999999999999985 4565
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh-----hHHHHHH
Q 003214 72 PHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-----QVYGALF 145 (838)
Q Consensus 72 ~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~-----~~~~~L~ 145 (838)
.+++++|..||+.+++++.+++..+ ++.+.+++.|++.++| ++||++++.+.+.++++ ...+++.
T Consensus 82 --------~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~ 152 (876)
T 1qgr_A 82 --------AIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (876)
T ss_dssp --------TSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred --------cCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4999999999999999998888888 9999999999999999 89999999999999764 3578999
Q ss_pred HHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHH
Q 003214 146 VLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAW 225 (838)
Q Consensus 146 ~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~ 225 (838)
+|..+++.+. ++ . +...++.++..+...+.++.+ ...++..+++++..++.. ++..+.........
T Consensus 153 ~l~~l~~~~~---~~---~----~~~~~~~ll~~l~~~l~~~~~---~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~i 218 (876)
T 1qgr_A 153 AIGYICQDID---PE---Q----LQDKSNEILTAIIQGMRKEEP---SNNVKLAATNALLNSLEF-TKANFDKESERHFI 218 (876)
T ss_dssp HHHHHHHHSC---HH---H----HGGGHHHHHHHHHHHHSTTCS---CHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHH
T ss_pred HHHHHHHhcC---Hh---h----HHhHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 9999998752 11 1 222334444444444443211 245788899999877542 12111111101123
Q ss_pred HHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHH-HHHHHHHHH
Q 003214 226 MILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNL 304 (838)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~ 304 (838)
++.+...++ ..| .++++.+++++..++..+++. ..++++ .+++.++..
T Consensus 219 l~~l~~~~~--------~~~---------~~vr~~a~~~l~~l~~~~~~~--------------~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 219 MQVVCEATQ--------CPD---------TRVRVAALQNLVKIMSLYYQY--------------METYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHTT--------CSS---------HHHHHHHHHHHHHHHHHSGGG--------------CHHHHTTTHHHHHHHH
T ss_pred HHHHHHHcC--------CCC---------HHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHH
Confidence 333333221 112 257788999999999876421 111233 445555543
Q ss_pred HHhhhCCcccCHHHHHHHHHHHHhhcCcch-------------------hhhhchhhHHHHHHHhHhccccCChhhHhhh
Q 003214 305 LNRIRVGGYLPDRVTNLILQYLSNSISKNS-------------------MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLW 365 (838)
Q Consensus 305 l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~-------------------~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w 365 (838)
+. ...+.++..+++||..+++... .+...++++..++..+ +..+. +.+
T Consensus 268 ~~------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l-l~~l~--~~~---- 334 (876)
T 1qgr_A 268 MK------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL-TQTLT--KQD---- 334 (876)
T ss_dssp HT------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH-HHHTT--CCC----
T ss_pred hc------CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH-HHHhh--ccc----
Confidence 31 2367889999999998875421 1122334445554432 23332 111
Q ss_pred hcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHH
Q 003214 366 DEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (838)
Q Consensus 366 ~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~ 445 (838)
+|+ | ++.|++|.+|..++..++...++.+++.+++++.+.+.. .+|+.|++++.++|.++.
T Consensus 335 -~d~--------~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~--------~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 335 -END--------D--DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp -SSC--------C--TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSS
T ss_pred -ccc--------c--ccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC--------CChHHHHHHHHHHHHHHc
Confidence 110 1 235899999999999999999888888888888777753 489999999999999987
Q ss_pred HhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 003214 446 KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVF 522 (838)
Q Consensus 446 ~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~V~~~A~~ 522 (838)
++... .+...+..++ +.+++.++++++.+|.+|+|++|++++.... ....+..+++.++..++++ ..||..|+.
T Consensus 396 ~~~~~-~~~~~~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 396 GPEPS-QLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp SSCHH-HHHHHHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 65411 0112233333 3455567888999999999999999875321 2356899999999999885 779999999
Q ss_pred HHHHHHHhcc------------cccccccchHHHHHHHHHHhhhhch------hhHHHHHHHHHHhhcccchhhHHHHHH
Q 003214 523 ALRSFVEACR------------DLNEIRPILPQLLDEFFKLMNEVEN------EDLVFTLETIVDKFGEEMAPYALGLCQ 584 (838)
Q Consensus 523 al~~~~~~~~------------~~~~l~p~l~~il~~L~~ll~~~~~------~~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (838)
||..++.... ..+.+.||++.++..|+.++...+. ..+..+++.++...+.+..||...+++
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 552 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHH
Confidence 9999998753 1356899999999999999986532 136788899999999888899888888
Q ss_pred HHHHHHHHHHhcccCCCCCCChh---HHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh--hhHHHHHH
Q 003214 585 NLAAAFWRCMNTAEADEDADDPG---ALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QEVFEEVL 659 (838)
Q Consensus 585 ~L~~~~~~~~~~~~~d~~~~~~~---~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~--~~~~~~~l 659 (838)
.+...+......... ...+++. ...+..++.++..++..++. ..+.++.+.++|.+..++.... ....+.++
T Consensus 553 ~l~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 553 VIMERLQQVLQMESH-IQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQISDVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHTTTTS-CCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHTTHHHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCChhhHHHHHHHHHHHHHHHHHHHHHhCh--hhhhHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence 877644333211100 0001122 22345677888888877652 2334455778888888887654 35778899
Q ss_pred HHHHHhhhcC-CCCCHhhhHhHHHHHHHHhhh-HhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCC
Q 003214 660 EIVSYMTFFS-PTISLEMWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN 737 (838)
Q Consensus 660 ~ll~~~~~~~-~~~~~~l~~l~~~l~~~~~~~-~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~ 737 (838)
..+..++... ..+.|.+..++|.+...+.+. ..+.....+..+...+...++.+. ++...++..+.+.+.++.
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-----PFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhCCcc
Confidence 9999888754 346677788888888887653 344555566666666554444443 678888888878886432
Q ss_pred CCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHh
Q 003214 738 LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLR 777 (838)
Q Consensus 738 ~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~ 777 (838)
.+..-...++..++.++..+|+.+.++++.++..+...+.
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHT
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Confidence 2223346788999999999998888999999988877765
No 9
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1e-37 Score=371.72 Aligned_cols=725 Identities=11% Similarity=0.150 Sum_probs=432.2
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 003214 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (838)
||++.+.+++..+++||++.|++|+++|++++++|++|..+.+++.+ +.+..+|++|++.||+.|+++|..
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~-------- 95 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKI-------- 95 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhh--------
Confidence 78999999999999999999999999999999999999999999865 568999999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHH
Q 003214 81 ISQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (838)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~---------~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~ 149 (838)
+|+++|..||+.+++.+.. .++.+++++|.+++.|++++||+.||++++++++.++++ ....+|.+|..
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~ 175 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKL 175 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999843 357889999999999999999999999999999999766 56778889998
Q ss_pred HHHHc-ccCC----ccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhh-hcCC----------
Q 003214 150 LSRKY-EFKS----DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIP---------- 213 (838)
Q Consensus 150 i~~~~-~~~~----~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~-~~~p---------- 213 (838)
+.++. .+++ ...+..+.+.+...+|.+++++...+++.. + .++...+++++++++. .++.
T Consensus 176 L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~---~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 176 LSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-N---APLVHATLETLLRFLNWIPLGYIFETKLIST 251 (1073)
T ss_dssp HHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C---HHHHHHHHHHHHHHHHhcCHHHhccchHHHH
Confidence 88874 2211 112445777777789999999888875432 1 2344555555554432 1110
Q ss_pred ---cccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHH-HHHHHH----------HHHhCCCCCCC
Q 003214 214 ---KQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTV-HILNRL----------YTRFGDLKLQN 279 (838)
Q Consensus 214 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~-~~l~~l----------~~~~~~~~~~~ 279 (838)
..+.+++....-++.+..+++...+ +-++ ++.+ ++ .+++.+ ...|......+
T Consensus 252 L~~~~L~~~~~r~aA~dcL~eIv~k~~~------~~~~-------~~~~-lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d 317 (1073)
T 3gjx_A 252 LIYKFLNVPMFRNVSLKCLTEIAGVSVS------QYEE-------QFET-LFTLTMMQLKQMLPLNTNIRLAYSNGKDDE 317 (1073)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSCSG------GGHH-------HHHH-HHHHHHHHHHHHSCTTSCHHHHHHTCCTTH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhcccc------chHH-------HHHH-HHHHHHHHHHHhcCCchhHHHHHhccchhh
Confidence 0111122222223334444443211 0000 1111 11 112211 11121110001
Q ss_pred hhh-HHHHHHHHHHhHHHHHHHHHHHHHhh---------------hCCcccCHHHHHHHHHHHHhhcCc-----------
Q 003214 280 PEN-RAFAQMFQKNYAGKILECHLNLLNRI---------------RVGGYLPDRVTNLILQYLSNSISK----------- 332 (838)
Q Consensus 280 ~~~-~~f~~~f~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~~~~~~l~fl~~~~~~----------- 332 (838)
+++ ..++..| ..+.+.+..+++.. .-......++...+++||....+.
T Consensus 318 ~e~~~~l~~~f-----~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~ 392 (1073)
T 3gjx_A 318 QNFIQNLSLFL-----CTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSA 392 (1073)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 111 1122111 12222222222110 001122567889999999876431
Q ss_pred ------------chhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhh
Q 003214 333 ------------NSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK 400 (838)
Q Consensus 333 ------------~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~ 400 (838)
+..+..+++.+..+... ++..|...+|.. .-++|.+|++|+...+.+ ..+.+.+-.+++..++..
T Consensus 393 ~~~~~~~~~~~~~~~~~~y~~i~~~L~~v-lI~~m~~P~ev~-i~e~e~ge~~re~~~d~~-~~~ly~~mrd~L~~lt~l 469 (1073)
T 3gjx_A 393 SPLLSGSQHFDIPPRRQLYLTVLSKVRLL-MVSRMAKPEEVL-VVENDQGEVVREFMKDTD-SINLYKNMRETLVYLTHL 469 (1073)
T ss_dssp SSCTTSSCCSCSCHHHHTTHHHHHHHHHH-HHHTCCCSCCEE-EEECSSSCEEEEECSSCH-HHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHHHHHHH-HHHhcCCCcccc-ccCcccchHHHHHHhhcc-hHHHHHHHHHHHHHHhcC
Confidence 01223456677776654 456676554322 223444455544322221 123455555666666654
Q ss_pred cccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCC-----Ccc
Q 003214 401 RGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-----VGH 475 (838)
Q Consensus 401 ~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~-----~~~ 475 (838)
.+.++...+++.+.+.++. + ..+|...||+++++|++|+.+.+..+ +.-+..++ +.++.....+ -+.
T Consensus 470 ~~~~~~~i~~~~l~~~~~~----~--~~sW~~lea~~~aigaIag~~~~~~E-~~~Lp~vi-~~Ll~L~e~~~~kd~k~~ 541 (1073)
T 3gjx_A 470 DYVDTEIIMTKKLQNQVNG----T--EWSWKNLNTLCWAIGSISGAMHEEDE-KRFLVTVI-KDLLGLCEQKRGKDNKAI 541 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHTS----C--CCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHH-HHHHHHHHHSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcC----C--CCCHHHHhHHHHHHHHHHCcCCcccc-cchHHHHH-HHHhcccccccccchhHH
Confidence 4556666666655544332 1 24799999999999999976543110 11222322 2222222222 356
Q ss_pred hhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc------ccccccchHHHHHHHH
Q 003214 476 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD------LNEIRPILPQLLDEFF 549 (838)
Q Consensus 476 lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~------~~~l~p~l~~il~~L~ 549 (838)
++..+||++|+|++|.-.+++.+..++..++..+.++++.|+.+||.|+..++++|.. .....||++++++.+.
T Consensus 542 vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~ 621 (1073)
T 3gjx_A 542 IASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNIN 621 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHH
T ss_pred HHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH
Confidence 7888999999999986556789999999999999999999999999999999999961 1335689999999999
Q ss_pred HHhhhhchhh---HHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHHHHHhcccCCCCC--CChhHHHHHHHHHHHHHHH
Q 003214 550 KLMNEVENED---LVFTLETIVDKFGEEM--APYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTIL 622 (838)
Q Consensus 550 ~ll~~~~~~~---l~~~l~~iv~~~~~~i--~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~~i~~i~ 622 (838)
......+.+. +.++++.++...+++. ..+...+++.+.+.+.++.++...+++- |.+.......+++|...+.
T Consensus 622 ~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~ 701 (1073)
T 3gjx_A 622 TIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRAC 701 (1073)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHH
Confidence 9888776654 6677777777776643 2345555555554444433322111100 1110111233455555555
Q ss_pred HhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhh
Q 003214 623 ESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPL 702 (838)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L 702 (838)
.+++ ..+.|.+..+. ++.-.++.-.-+.++..+...+.+.. .+..-+.+++ .-.++++++
T Consensus 702 ~~~g----------~~f~~~~~~i~-~~~l~~y~~~s~~i~~~v~~~g~~~~--~~~~~~~~r~-------ik~eil~l~ 761 (1073)
T 3gjx_A 702 KAVG----------HPFVIQLGRIY-LDMLNVYKCLSENISAAIQANGEMVT--KQPLIRSMRT-------VKRETLKLI 761 (1073)
T ss_dssp HHHC----------GGGHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCGGGG--SSHHHHHHHH-------HHHHHHHHH
T ss_pred hhcc----------hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhh--ccHHHHHHHH-------HHHHHHHHH
Confidence 5544 34444444443 12223333333333332221111100 0011112222 334677788
Q ss_pred hhhhccCcc--cccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHH----
Q 003214 703 DNYISRGTA--HFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL---- 776 (838)
Q Consensus 703 ~~~i~~~~~--~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l---- 776 (838)
..|+.+..+ .+.+.--++.++.++..+.+.. +..-+ ..++.+...++.+++..+.+.++.|+++++..-
T Consensus 762 ~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~--p~~r~---~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi 836 (1073)
T 3gjx_A 762 SGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV--PAARE---PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMI 836 (1073)
T ss_dssp HHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC--GGGCC---THHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC--ccccc---HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 888887643 2221111245566656555532 22222 469999999999999988899999988876533
Q ss_pred hh--hhhhHHHHHHHHHHH
Q 003214 777 RR--AEKSYLKCLLVQVIA 793 (838)
Q Consensus 777 ~~--~~~~~~~~~~l~v~~ 793 (838)
.. .+.|..+..+...+-
T Consensus 837 ~~~f~~~Pe~r~~ff~ll~ 855 (1073)
T 3gjx_A 837 NKDFEEYPEHRTNFFLLLQ 855 (1073)
T ss_dssp SSCSSSCHHHHHHHHHHHH
T ss_pred hCCcccCcHHHHHHHHHHH
Confidence 22 467777766544433
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.9e-34 Score=346.68 Aligned_cols=623 Identities=13% Similarity=0.144 Sum_probs=394.3
Q ss_pred CChHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCc-ChhhHHHHHHHHHHhhhhcCCCCCCCC
Q 003214 1 MDLPSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNC-DLSVRQVASIHFKNFIAKNWAPHEPNE 77 (838)
Q Consensus 1 MD~~~l~~~L~~~ls~--d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~-~~~iR~~Aai~lKn~i~~~W~~~~~~~ 77 (838)
||.+++.++++.+++| |++.|++|+++|++++++|++|..+..++.+++. +..+|++|+.+||++|+ .
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~----- 73 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----E----- 73 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----H-----
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----h-----
Confidence 8999999999999998 7999999999999999999999999999987543 89999999999999998 2
Q ss_pred CCCCChh----hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh-h---HHHHH
Q 003214 78 QQKISQV----DKDMVRDHILVFVAQ-----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGAL 144 (838)
Q Consensus 78 ~~~l~~e----~k~~ir~~ll~~l~~-----~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-~---~~~~L 144 (838)
++++ +|..||+.+++.+.. .++.||++++.+++.|++++||..||++++++++.++++ . ....|
T Consensus 74 ---l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~L 150 (980)
T 3ibv_A 74 ---WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYL 150 (980)
T ss_dssp ---CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ---CChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHH
Confidence 8888 999999999999863 468899999999999999999999999999999999876 2 35567
Q ss_pred HHHHHHHHHccc---CCcc---Cc-chHHHHH-----HHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcC
Q 003214 145 FVLRILSRKYEF---KSDE---ER-TPVYRIV-----EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI 212 (838)
Q Consensus 145 ~~L~~i~~~~~~---~~~~---~~-~~~~~~~-----~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~ 212 (838)
++|..+.++... .++. .| ..+.+.+ +.+++..++++.....+. ...++..+++|+.+++.. +
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-----~~~l~~~~L~~l~s~i~w-i 224 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-----NYGTVGLCLQVYAQWVSW-I 224 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTT-S
T ss_pred HHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHhh-c
Confidence 777766676532 1111 11 1223333 333555555555543311 235678899999877642 2
Q ss_pred Ccc-cCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHH-------------------h
Q 003214 213 PKQ-LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTR-------------------F 272 (838)
Q Consensus 213 p~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~-------------------~ 272 (838)
|.. +.+ ..+++.+...+.. + +++..+++++..++.+ +
T Consensus 225 ~~~~i~~----~~ll~~l~~~L~~----------~---------~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 225 NINLIVN----EPCMNLLYSFLQI----------E---------ELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp CHHHHHC----HHHHHHHHHHTTS----------H---------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHhhhc----chHHHHHHHHcCC----------h---------HHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 211 111 2344444443332 0 1222233333322222 1
Q ss_pred CCCC--CCChhh-HHHHHHHHHH--------------------hHHHHHHHHHHHH-HhhhCCcccCHHHHHHHHHHHHh
Q 003214 273 GDLK--LQNPEN-RAFAQMFQKN--------------------YAGKILECHLNLL-NRIRVGGYLPDRVTNLILQYLSN 328 (838)
Q Consensus 273 ~~~~--~~~~~~-~~f~~~f~~~--------------------~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~fl~~ 328 (838)
..-. .-+.+. +.+++.+..- -....+..++..+ ..... .++++...+++||..
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~---~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD---DYDETSTAVFPFLSD 358 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC---SSHHHHHTTHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHH
Confidence 1100 001111 1222222100 0001112222222 11111 256788889999988
Q ss_pred hcCcch-------hhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhc
Q 003214 329 SISKNS-------MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKR 401 (838)
Q Consensus 329 ~~~~~~-------~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~ 401 (838)
.++.-+ .....++.+..++.. ++..|++.+++ .|++|. +.|+.+++...|.....+++.+....
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~--~~~~~~------d~ed~~~F~e~Rk~l~~l~d~~~~l~ 429 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASLKEFLKSLLEA-IIKKMKYDESQ--EWDDDP------DSEEEAEFQEMRKKLKIFQDTINSID 429 (980)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTC--CCCCCS------SSSTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHH-HHHHccCCCcc--cccccc------chhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 764311 234557788888876 44778887654 365421 01111123347777775555555545
Q ss_pred ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcC-------CcchHHHHHHHhhcccccc-cCCC
Q 003214 402 GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-------EPYKSELERMLVQHVFPEF-SSPV 473 (838)
Q Consensus 402 ~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~-------~~~~~~~~~~l~~~v~p~l-~~~~ 473 (838)
++.++..+.+++...+++...+. ...+|+.+||+++++|++++++... .+....+.+++...+-..+ +.+|
T Consensus 430 ~~~~l~~~~~~i~~~l~~~l~~~-~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h 508 (980)
T 3ibv_A 430 SSLFSSYMYSAITSSLSTAATLS-PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH 508 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC
Confidence 56666634444444443322111 1247999999999999999997631 1223345555544322222 2579
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHh--cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 003214 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS--GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (838)
|.+|..+||++|+|++|.-.+++.+..+++.++. .+.+++..||..||.|+.+|++.+ +..+.||++++++.+-.+
T Consensus 509 p~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~--~~~L~~~~~~il~~l~~l 586 (980)
T 3ibv_A 509 PLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI--KKQVVNYTESSLAMLGDL 586 (980)
T ss_dssp HHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT--TTTCSSSHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh--hHHhhhHHHHHHHHHHHh
Confidence 9999999999999999864566889999999999 999999999999999999999998 468899999999999888
Q ss_pred hhh-h---c-----------------hh---hHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003214 552 MNE-V---E-----------------NE---DLVFTLETIVDKFGE---EMAPYALGLCQNLAAAFWRCMNTAEADEDAD 604 (838)
Q Consensus 552 l~~-~---~-----------------~~---~l~~~l~~iv~~~~~---~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~ 604 (838)
+.. . + .+ .++++++.++...+. +...|+..+++.+.+.+.+..+....+ +
T Consensus 587 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~---~ 663 (980)
T 3ibv_A 587 LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSA---L 663 (980)
T ss_dssp GCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred hcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC---c
Confidence 762 1 1 01 177888888877652 344567777777776655555432221 1
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCChH---HHHHHHhhHHHHHHHHhcc--ChhhHHHHHHHHHHHhhhcCCCCCHhhhHh
Q 003214 605 DPGALAAVGCLRAISTILESVSRLPH---LFVQIEPTLLPIMRRMLTT--DGQEVFEEVLEIVSYMTFFSPTISLEMWSL 679 (838)
Q Consensus 605 ~~~~~~~~~~l~~i~~i~~~~~~~~~---~~~~l~~~~~p~i~~~l~~--~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l 679 (838)
++.. ..+.++-+++++.+.....+. .+......+++.+..+++. ......+.+...+..++.. +.+.+..+
T Consensus 664 ~~~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~---lg~~~~p~ 739 (980)
T 3ibv_A 664 ENII-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV---VGPDMLPK 739 (980)
T ss_dssp CHHH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT---THHHHTTT
T ss_pred cHHH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---ccHhHHHH
Confidence 2333 344567777888877643211 0233445666666666663 4567778888888877743 33334444
Q ss_pred HHHHHHH
Q 003214 680 WPLMMEA 686 (838)
Q Consensus 680 ~~~l~~~ 686 (838)
.|.+++.
T Consensus 740 lp~~i~~ 746 (980)
T 3ibv_A 740 VPQLISI 746 (980)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 11
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.98 E-value=1.6e-28 Score=303.44 Aligned_cols=521 Identities=13% Similarity=0.110 Sum_probs=332.9
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 4 ~~l~~~L~~~ls~--d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
+++.++|+.+++| |++.|++||++|++++++|+++..+..++.+.+.+..+|++|++.|||.|+++|.. +
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~--------l 82 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG--------M 82 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG--------S
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc--------C
Confidence 6789999999998 78889999999999999998888777777655678999999999999999999985 9
Q ss_pred ChhhHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--hHHHHHHHHHHHHH
Q 003214 82 SQVDKDMVRDHILVFVAQ-------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSR 152 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~-------~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i~~ 152 (838)
++++|..||+.+++.+.+ .++.||++++.+++.|+++|||++||++++++++.++++ ...++|.+|..+++
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999853 468999999999999999999999999999999999876 56789999999988
Q ss_pred Hccc---CCccCcchHHHHHHHHhHHHHHHHHHHhccc-----------CC---chhHHHHHHHHHHHhHHhhhhcCCcc
Q 003214 153 KYEF---KSDEERTPVYRIVEETFHHLLNIFNRLVQIV-----------NP---SLEVADLIKLICKIFWSSIYLEIPKQ 215 (838)
Q Consensus 153 ~~~~---~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~-----------~~---~~~~~~~~~~~lki~~~~~~~~~p~~ 215 (838)
+... .....+..+...+...+|.+++++...+.+. ++ +.....+...+++++.+++.. +|..
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W-i~~~ 241 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW-VSMS 241 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT-SCHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc-cCHH
Confidence 7421 1111123344444544555555554443220 00 012345778888888765431 1211
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhC----------------------
Q 003214 216 LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFG---------------------- 273 (838)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~---------------------- 273 (838)
+.. +.-..+++.+...+.. + +++..+++++..++.++.
T Consensus 242 ~i~-~~~~~ll~~l~~~l~~--~-----------------~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~ 301 (1204)
T 3a6p_A 242 HIT-AENCKLLEILCLLLNE--Q-----------------ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILS 301 (1204)
T ss_dssp HHH-TTTSHHHHHHHHGGGC--T-----------------TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHH
T ss_pred HHH-hccchHHHHHHHHcCC--H-----------------HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHH
Confidence 100 0001233333332221 0 011112222222221110
Q ss_pred -----CCCCCChhhHHHHHHHHHH---h-------------------HHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHH
Q 003214 274 -----DLKLQNPENRAFAQMFQKN---Y-------------------AGKILECHLNLLNRIRVGGYLPDRVTNLILQYL 326 (838)
Q Consensus 274 -----~~~~~~~~~~~f~~~f~~~---~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl 326 (838)
++...+++..+|++.+.+- + ...+++.++... .. .+..+...+++||
T Consensus 302 ~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t---~~---~~~~vs~~~l~fW 375 (1204)
T 3a6p_A 302 AAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFT---TH---PSQFLRSSTQMTW 375 (1204)
T ss_dssp HHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHH---TS---SCHHHHHHHHHHH
T ss_pred HhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHH---hC---ccHHhHHHHHHHH
Confidence 1110112222222222110 0 112222222221 11 2556778889999
Q ss_pred HhhcCcch--hhhhchhhHHHHHHHhH--hccccCChhhHhhhhcCHHHHHHHhcccc----cccCCHHHHHHHHHHHHH
Q 003214 327 SNSISKNS--MYNLLQPRLDVLLFEIV--FPLMCFNDNDQKLWDEDPHEYVRKGYDII----EDLYSPRTASMDFVSELV 398 (838)
Q Consensus 327 ~~~~~~~~--~~~~~~~~l~~li~~~i--~~~l~~~~~d~e~w~~Dp~efi~~~~d~~----~d~~s~r~~a~~ll~~l~ 398 (838)
...++... ....+++.+..++..+. +..+.+.+++.. -..+|..++.|+. +++.+.|....++++.++
T Consensus 376 ~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~----~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~ 451 (1204)
T 3a6p_A 376 GALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS----PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLAC 451 (1204)
T ss_dssp HHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS----THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCC----cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 97765532 12345677777776651 356677654321 0123333332211 124678999999999999
Q ss_pred hhcccchHHHHHHHHHHHhccccCC-----------------CCCCcchhhHhHHHHHHHHHHHHhhc-C--Ccch-HHH
Q 003214 399 RKRGKENLQKFIQFIVGIFKRYDET-----------------PVEYKPYRQKDGALLAIGALCDKLKQ-T--EPYK-SEL 457 (838)
Q Consensus 399 ~~~~~~~~~~il~~~~~~l~~~~~~-----------------~~~~~~~~~~ea~l~~lg~i~~~l~~-~--~~~~-~~~ 457 (838)
...+...+..+.+.+.+.+.+...+ ......|...||...+++++..++.+ . .... ..+
T Consensus 452 ~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~ 531 (1204)
T 3a6p_A 452 RLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDG 531 (1204)
T ss_dssp HHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHH
Confidence 9988878877777776666542111 01124799999999999999988843 1 1111 123
Q ss_pred HHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCC------------CCchHHHHHHHHH
Q 003214 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP------------ELPVRVDSVFALR 525 (838)
Q Consensus 458 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~V~~~A~~al~ 525 (838)
++++.. + +.++..+|.+|.+++.++|.|+.+.-++++.+..+++.++..+.+. ...||..||.++.
T Consensus 532 ~~Ll~~-l-l~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~ 609 (1204)
T 3a6p_A 532 IELLQM-V-LNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSII 609 (1204)
T ss_dssp HHHHHH-H-HHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-H-HhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHH
Confidence 343322 1 1223458899999999999998874356788999999999887551 2258999999999
Q ss_pred HHHHhcccccccccchHHHHHHHHHHhhhhc---hhh---HHHHHHHH
Q 003214 526 SFVEACRDLNEIRPILPQLLDEFFKLMNEVE---NED---LVFTLETI 567 (838)
Q Consensus 526 ~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~---~~~---l~~~l~~i 567 (838)
+++.++ ++.+.||++++.+.+-.++.... ..+ +..++..+
T Consensus 610 ~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 610 KMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp HHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 999997 58999999999999988876332 333 44555444
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.98 E-value=4.6e-31 Score=297.20 Aligned_cols=424 Identities=16% Similarity=0.240 Sum_probs=297.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCC---CCC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPN---EQQ 79 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~---~~~ 79 (838)
+|.++|.+++|||+++|++||++|+++++ .|+|+..|++++.+.+.+..+|++|+++|||.|+++|....+. .+.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 47799999999999999999999999987 5999999999999876789999999999999999998643210 134
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh-----hHHHHHHHHHHHHHH
Q 003214 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRK 153 (838)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~-----~~~~~L~~L~~i~~~ 153 (838)
.+++++|..||+.|++.+.+++..+ ++++.+++.|++.++| +.||++++.+++.++++ ..++++.+|..++++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999888889 9999999999999999 59999999999999763 458899999999998
Q ss_pred cccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHH--HHHHHH
Q 003214 154 YEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAW--MILFLN 231 (838)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~--~~~~~~ 231 (838)
++.. .+....+.++|.+.. .+.+..+ ...++..+++++..++.+ +. +.+..| ...+..
T Consensus 161 ~~~~------~~~~~~~~ll~~l~~----~l~~~~~---~~~vr~~a~~~l~~~~~~-~~------~~~~~~~~~~~l~~ 220 (462)
T 1ibr_B 161 IDPE------QLQDKSNEILTAIIQ----GMRKEEP---SNNVKLAATNALLNSLEF-TK------ANFDKESERHFIMQ 220 (462)
T ss_dssp SCGG------GTGGGHHHHHHHHHH----HHSTTCC---CHHHHHHHHHHHHHHTTT-TH------HHHTSHHHHHHHHH
T ss_pred CCch------hhHhHHHHHHHHHHH----HhCCCCC---CHHHHHHHHHHHHHHHHH-HH------HhhhhhHHHHHHHH
Confidence 6321 112223334444443 3333211 246788899999876532 11 111111 112222
Q ss_pred HhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHH-HHHHHHHHHHHhhhC
Q 003214 232 VLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNRIRV 310 (838)
Q Consensus 232 ~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~l~~~~~ 310 (838)
.+..... ..| ..+++++++++..+...++.. ..++.+ .+++.++..+.
T Consensus 221 ~l~~~~~----~~~---------~~vr~~~~~~l~~l~~~~~~~--------------~~~~~~~~l~~~~~~~~~---- 269 (462)
T 1ibr_B 221 VVCEATQ----CPD---------TRVRVAALQNLVKIMSLYYQY--------------METYMGPALFAITIEAMK---- 269 (462)
T ss_dssp HHHHHTT----CSS---------HHHHHHHHHHHHHHHHHCGGG--------------CTTTTTTTHHHHHHHHHH----
T ss_pred HHHHhcC----CCC---------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHc----
Confidence 3321111 112 257889999999999886421 111333 44444444332
Q ss_pred CcccCHHHHHHHHHHHHhhcCcc-------------------hhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHH
Q 003214 311 GGYLPDRVTNLILQYLSNSISKN-------------------SMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHE 371 (838)
Q Consensus 311 ~~~~~~~~~~~~l~fl~~~~~~~-------------------~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~e 371 (838)
...+.++..+++||..+++.. ..+..+++++..++..+ +..+ ++.|. |
T Consensus 270 --~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l-~~~l--~~~d~-----d--- 336 (462)
T 1ibr_B 270 --SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL-TQTL--TKQDE-----N--- 336 (462)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH-HHHT--TCCCS-----S---
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH-HHHH--Hhccc-----c---
Confidence 236788999999999887542 12223444555555432 2322 22211 1
Q ss_pred HHHHhcccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC
Q 003214 372 YVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE 451 (838)
Q Consensus 372 fi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~ 451 (838)
.+++.|++|.+|..++..++..+|+.+++.+++++.+.+++ .+|+.|+++++++|.+++++...
T Consensus 337 -------~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~--------~~~~~r~aal~~l~~l~~~~~~~- 400 (462)
T 1ibr_B 337 -------DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGPEPS- 400 (462)
T ss_dssp -------CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCTT-
T ss_pred -------cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHhcCCcHH-
Confidence 11245899999999999999999988888889888888763 48999999999999999875421
Q ss_pred cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCC
Q 003214 452 PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLR 510 (838)
Q Consensus 452 ~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~ 510 (838)
.+...+..++ +.+.+.++++++.+|.+|||++|++++.... .+..+..+++.++..|+
T Consensus 401 ~~~~~l~~~~-~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 401 QLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTCTTTTTHH-HHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 0111223332 4456677889999999999999999875422 23578999999988775
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.88 E-value=3.9e-19 Score=223.78 Aligned_cols=671 Identities=11% Similarity=0.069 Sum_probs=402.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCC
Q 003214 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTP----------QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP 72 (838)
Q Consensus 3 ~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p----------~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~ 72 (838)
..++.++|++..|||++.|++|+..|.+.-+.+ .....|++.+. +.+..+|..|+..+.+.+.
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~----- 77 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVS----- 77 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH-----
Confidence 478999999999999999999999998765543 24556666664 3478999999999988763
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCC---------CChhHHHHHHHHhhh-h---h
Q 003214 73 HEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPE---------QWPHLLDWVKHNLQD-Q---Q 139 (838)
Q Consensus 73 ~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~---------~Wp~ll~~l~~~l~s-~---~ 139 (838)
.++++....|++.+++.+.+++..+|...+.+++.|+....|. .|+++++.+++.+++ + .
T Consensus 78 -------~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 78 -------KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp -------TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred -------hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence 1556788899999999998888999999999999999876655 499999999999984 4 4
Q ss_pred HHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCCh
Q 003214 140 VYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDP 219 (838)
Q Consensus 140 ~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~ 219 (838)
..+++.+|.++++.+... ....+.. +++.+.. .+.+. ...++..+++++..+... .+..
T Consensus 151 ~~~al~~l~~~~~~~~~~---l~~~~~~----ll~~l~~----~L~~~-----~~~vR~~a~~al~~l~~~-~~~~---- 209 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGL---LVNFHPS----ILTCLLP----QLTSP-----RLAVRKRTIIALGHLVMS-CGNI---- 209 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSS---CTTTHHH----HHHHHGG----GGGCS-----SHHHHHHHHHHHHHHTTT-C-------
T ss_pred HHHHHHHHHHHHHHhHhH---HHHHHHH----HHHHHHH----HHcCC-----cHHHHHHHHHHHHHHHHh-cCHH----
Confidence 588999999999865311 1112222 3333222 23322 135788888888776542 2222
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHH
Q 003214 220 NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE 299 (838)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~ 299 (838)
.+...++.+...+.... +. ..++.+++++..+....|. . | .++++.+++
T Consensus 210 -~~~~~l~~l~~~L~~~~-------~~---------~~r~~a~~~l~~l~~~~~~-~------------~-~~~l~~l~~ 258 (1230)
T 1u6g_C 210 -VFVDLIEHLLSELSKND-------SM---------STTRTYIQCIAAISRQAGH-R------------I-GEYLEKIIP 258 (1230)
T ss_dssp --CTTHHHHHHHHHHHTC-------SS---------CSCTTHHHHHHHHHHHSSG-G------------G-TTSCTTHHH
T ss_pred -HHHHHHHHHHHHhccCC-------ch---------hHHHHHHHHHHHHHHHhHH-H------------H-HHHHHHHHH
Confidence 23334555555554321 00 1223466777777665442 0 1 124455666
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhh----HhhhhcCHHH--HH
Q 003214 300 CHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND----QKLWDEDPHE--YV 373 (838)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d----~e~w~~Dp~e--fi 373 (838)
.+++.+.. ....-......++..|...+. +.+++++..++.. ++..+..+++. .+.|.++.++ ..
T Consensus 259 ~ll~~l~d---~~~~vR~~a~~~l~~l~~~~~-----~~~~~~l~~li~~-ll~~l~~d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 259 LVVKFCNV---DDDELREYCIQAFESFVRRCP-----KEVYPHVSTIINI-CLKYLTYDPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp HHHHHHSS---CCTTTHHHHHHHHHHHHHCTT-----CCCHHHHHHHHHH-HTTCCCCC---------------------
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHHHCh-----HHHHHhHHHHHHH-HHHHhCCCCCCCCcccccccccccccccc
Confidence 66665532 111111233444444444321 2456777777765 44556543321 1112111110 00
Q ss_pred HH------h-cccccccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHH
Q 003214 374 RK------G-YDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 446 (838)
Q Consensus 374 ~~------~-~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~ 446 (838)
.+ . .+..+..|.+|.+|.+.+..++...++ .+.++++-+...+..+... .+...|.+++.+++.+...
T Consensus 330 ~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 330 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKE----REENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSC----SSSHHHHHHHHHHHHHHHH
T ss_pred cchhhcccccccccccCHHHHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHH
Confidence 00 0 000111366899999999999987664 3333333322333322211 2567788888888877665
Q ss_pred hhcCC-------------cchHHHHHHHh---hcccccccCCCcchhhHHHHHHHhhhccccCC--hhHHHHHHHHHHhc
Q 003214 447 LKQTE-------------PYKSELERMLV---QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSG 508 (838)
Q Consensus 447 l~~~~-------------~~~~~~~~~l~---~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~ 508 (838)
..... .....+..++. ..+.+.++++++.+|..++..++.+.... .. ..++..+++.++..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~-~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL-PGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTTTGGGHHHHHHHHHHH
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc-hhhhHHHHHHHHHHHHHH
Confidence 43200 00111222221 12223367788899999999999997642 11 14689999999999
Q ss_pred CCCCCC--chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhcc-------cch
Q 003214 509 LRDPEL--PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGE-------EMA 576 (838)
Q Consensus 509 l~~~~~--~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~-------~i~ 576 (838)
|.|+.. .|+..|+.++..++.... ++.+.||++.++..++..+++.... ....++..++..+++ .+.
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHS-PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSC-GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCC-HHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 998765 689999999999987653 5678899999999999888764332 245677788888776 788
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHH
Q 003214 577 PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656 (838)
Q Consensus 577 p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~ 656 (838)
||...+++.+.. .+... |+ + ...+..++.+++.++...++.- ....+.++|.+...+..+.. ..
T Consensus 563 ~~~~~ll~~ll~----~l~~~--d~----~-~~vr~~a~~~lg~L~~~~g~~~---~~~~~~~l~~L~~~l~~e~~--r~ 626 (1230)
T 1u6g_C 563 PYIKDLFTCTIK----RLKAA--DI----D-QEVKERAISCMGQIICNLGDNL---GSDLPNTLQIFLERLKNEIT--RL 626 (1230)
T ss_dssp HHHHHHHHHHHH----HHSCS--SS----C-HHHHHHHHHHHHHHHHHTGGGC---CTHHHHHHHHHHHHTTSSSH--HH
T ss_pred HHHHHHHHHHHH----HHhcc--CC----C-HHHHHHHHHHHHHHHHHhCchh---hhhHHHHHHHHHHHhccchh--HH
Confidence 999999888775 33322 11 1 3457788899999999887532 22346778888777765432 22
Q ss_pred HHHHHHHHhhhcC--CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhc
Q 003214 657 EVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMA 734 (838)
Q Consensus 657 ~~l~ll~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~ 734 (838)
.++..+..+.... ..+++.+..++|.+.+.+.+.+.......+..+..++...++.+-. +. +..++..++.
T Consensus 627 ~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~----~~---v~~~l~~ll~ 699 (1230)
T 1u6g_C 627 TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA----AM---IDAVLDELPP 699 (1230)
T ss_dssp HHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCH----HH---HHHHHTTCGG
T ss_pred HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCH----HH---HHHHHHHHHh
Confidence 3445555554322 1345556678888877765544445556667776666665544321 22 2223323221
Q ss_pred CC-CCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh
Q 003214 735 DK-NLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (838)
Q Consensus 735 ~~-~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~ 778 (838)
.- ..+......++.++..++...+..+.++.+.++..++..+.+
T Consensus 700 ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 744 (1230)
T 1u6g_C 700 LISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRS 744 (1230)
T ss_dssp GSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTC
T ss_pred hcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcC
Confidence 10 001112235666666666665555555666666666666654
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.83 E-value=1.3e-16 Score=193.03 Aligned_cols=688 Identities=11% Similarity=0.066 Sum_probs=419.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-----CC-Ch----HHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQY-----TP-QH----LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHE 74 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~-----~p-~f----~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~ 74 (838)
.+.+++....+.|..+|..|--.|+..-+ .| +- -..+++.+. +.+..+|..++..+....+..|..
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~--~~~~~vr~~~a~~i~~ia~~~~~~-- 124 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG--DSSPLIRATVGILITTIASKGELQ-- 124 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT--CSSHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcCcc--
Confidence 45566665457889999999988885532 12 11 223444443 346789999999999988876543
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCC---------CChhHHHHHHHHhhhh--hH-HH
Q 003214 75 PNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPE---------QWPHLLDWVKHNLQDQ--QV-YG 142 (838)
Q Consensus 75 ~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~---------~Wp~ll~~l~~~l~s~--~~-~~ 142 (838)
.+|+ +-..|++.+.+++..+|.....+++.|+.. +|. .++.+++.+++.++++ .+ ..
T Consensus 125 -----~wp~-----ll~~L~~~l~~~~~~~r~~al~~L~~i~~~-~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~ 193 (852)
T 4fdd_A 125 -----NWPD-----LLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSH 193 (852)
T ss_dssp -----TCTT-----HHHHHHHHHSCSSHHHHHHHHHHHHHHHHH-HTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHH
T ss_pred -----ccHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHH
Confidence 2443 566677788888888999888899888864 332 2677888888888766 33 56
Q ss_pred HHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhH
Q 003214 143 ALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVF 222 (838)
Q Consensus 143 ~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~ 222 (838)
++.+|..+++.. . ..+...++.++|.+... .+++ ..++++.+++++..+... .|..+. +.+
T Consensus 194 A~~aL~~~~~~~----~---~~~~~~~~~~l~~l~~~----~~d~-----~~~vr~~a~~~L~~l~~~-~~~~~~--~~l 254 (852)
T 4fdd_A 194 AVACVNQFIISR----T---QALMLHIDSFIENLFAL----AGDE-----EPEVRKNVCRALVMLLEV-RMDRLL--PHM 254 (852)
T ss_dssp HHHHHHTTTTTT----C---HHHHTSHHHHHHHHHHH----HTCC-----CHHHHHHHHHHHHHHHHH-CHHHHG--GGH
T ss_pred HHHHHHHHHhcc----c---HHHHHHHHHHHHHHHHH----cCCC-----CHHHHHHHHHHHHHHHHh-CHHHHH--HHH
Confidence 677776655321 1 11222233444444432 2222 246788888888776542 233332 456
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHH
Q 003214 223 NAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHL 302 (838)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~ 302 (838)
...++.+...++. .|+ .++..++..+..+.+ .. ... .+..++.+.++..++
T Consensus 255 ~~l~~~l~~~~~~--------~~~---------~vr~~a~e~l~~l~~----~~----~~~----~~~~~~~~~l~p~ll 305 (852)
T 4fdd_A 255 HNIVEYMLQRTQD--------QDE---------NVALEACEFWLTLAE----QP----ICK----DVLVRHLPKLIPVLV 305 (852)
T ss_dssp HHHHHHHHHHHTC--------SSH---------HHHHHHHHHHHHHTT----ST----THH----HHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHccC--------CcH---------HHHHHHHHHHHHHhc----ch----hHH----HHHHHHHHHHHHHHH
Confidence 6667766666542 122 355666666655432 11 111 122334455555554
Q ss_pred HHHH----------hh-hCCccc-----CHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhh
Q 003214 303 NLLN----------RI-RVGGYL-----PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWD 366 (838)
Q Consensus 303 ~~l~----------~~-~~~~~~-----~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~ 366 (838)
..+. .. .+.... ...+...+...+..++...+ +. .+..++ |.
T Consensus 306 ~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~---~~~~l~-----~~------------ 363 (852)
T 4fdd_A 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE---LLPHIL-----PL------------ 363 (852)
T ss_dssp HHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG---GHHHHH-----HH------------
T ss_pred HHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH---HHHHHH-----HH------------
Confidence 4431 10 000000 00122222333222221100 00 111111 11
Q ss_pred cCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHH
Q 003214 367 EDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGAL 443 (838)
Q Consensus 367 ~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~---~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i 443 (838)
+.+...+ ..+..|.+|...+..+++..++ ..++.+++.+...+.. +++..|.++..++|.+
T Consensus 364 ------l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d--------~~~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 364 ------LKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--------KKALVRSITCWTLSRY 427 (852)
T ss_dssp ------HHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHT
T ss_pred ------HHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHH
Confidence 1111111 1256888999999988775543 3455666666666542 4789999999999999
Q ss_pred HHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCC-hhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 003214 444 CDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD-QNNFRKALHSVVSGLRDPELPVRVDSVF 522 (838)
Q Consensus 444 ~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~V~~~A~~ 522 (838)
+..+.... ....+.+++. .++..+.++++.+|..|+|.++.+++..-.. ..++..+++.++..+++.+......+..
T Consensus 428 ~~~~~~~~-~~~~~~~ll~-~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ 505 (852)
T 4fdd_A 428 AHWVVSQP-PDTYLKPLMT-ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYD 505 (852)
T ss_dssp HHHHHHSC-TTTTHHHHHH-HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHhccch-HHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 98775421 1112233332 2333456778999999999999997532111 1357888888888887554444455677
Q ss_pred HHHHHHHhcccccccccchHHHHHHHHHHhhhhc---h--hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcc
Q 003214 523 ALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE---N--EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA 597 (838)
Q Consensus 523 al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~---~--~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~ 597 (838)
|+..+++.....-.-.+|++.++..+++..+... . ..+..+++.++..++..+.||++.++..++..+...+...
T Consensus 506 ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~ 585 (852)
T 4fdd_A 506 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585 (852)
T ss_dssp HHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776543111113477777777776544321 1 2367888889999999999999999888776555443210
Q ss_pred ---cCCC--CCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH-HhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC-C
Q 003214 598 ---EADE--DADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-P 670 (838)
Q Consensus 598 ---~~d~--~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l-~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~-~ 670 (838)
..++ .+++++. ++..++++++.+++.++.+-..+ + .+.++|.+..+++.+..+..+.++.++..+.+.. .
T Consensus 586 ~~~~~~~~~~~~~d~~-~~~~~l~~l~~l~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 662 (852)
T 4fdd_A 586 MLNNAQPDQYEAPDKD-FMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 662 (852)
T ss_dssp HHHHHCTTTSCCCCTH-HHHHHHHHHHHHHHHHGGGGHHH--HHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHhhcCCcccCCCcch-HHHHHHHHHHHHHHHHhHhHHHH--hcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhH
Confidence 0011 0011222 45678999999999997543211 2 2678999999998777889999999999998765 4
Q ss_pred CCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHH
Q 003214 671 TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLI 750 (838)
Q Consensus 671 ~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll 750 (838)
.+.|.+..++|.+.+.+.....+........+..++...++.+. +|...++..+-+++.++.....-...++..+
T Consensus 663 ~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~-----p~~~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 663 HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----PYIPMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp GTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG-----GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH-----HHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 57777888888888887554455556666677776665555544 6888888888888875543323345677888
Q ss_pred HHHHHHcccCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHHH
Q 003214 751 EVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLT 803 (838)
Q Consensus 751 ~~i~~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~ 803 (838)
+.+....+..+.|+++.++...+..|...++...+...+.-++.++..||...
T Consensus 738 grl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~ 790 (852)
T 4fdd_A 738 GRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 790 (852)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH
Confidence 88888877778899999999999999765555556666666777777788753
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.82 E-value=2.9e-17 Score=200.06 Aligned_cols=624 Identities=12% Similarity=0.089 Sum_probs=380.3
Q ss_pred cChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhh-------C
Q 003214 50 CDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQ--VPPLLRVQLGECLKTIIHAD-------Y 120 (838)
Q Consensus 50 ~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~--~~~~i~~~~~~~i~~Ia~~d-------~ 120 (838)
.+..+|+.|...||+.- .+.+..+...|++.+.+ .+..+|...+.++...+..+ +
T Consensus 13 ~d~~~r~~A~~~L~~~~----------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (876)
T 1qgr_A 13 PDRLELEAAQKFLERAA----------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp SCHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH----------------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHH
Confidence 47789999999998732 12456788888988865 45789999999999876544 3
Q ss_pred CCCChhHHHH--------HHHHhhhh--hHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCc
Q 003214 121 PEQWPHLLDW--------VKHNLQDQ--QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPS 190 (838)
Q Consensus 121 p~~Wp~ll~~--------l~~~l~s~--~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 190 (838)
++.|+.+-+. +++.+.++ .++.+..++..+.+..... + -.+.++|.+.+.+. ++..
T Consensus 77 ~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~~~~~~~l~~i~~~~~~~--~-------~w~~ll~~l~~~l~----~~~~- 142 (876)
T 1qgr_A 77 QQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPV--N-------QWPELIPQLVANVT----NPNS- 142 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGG--T-------CCTTHHHHHHHHHH----CTTC-
T ss_pred HhhhccCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhCcc--c-------ccHHHHHHHHHHHh----CCCC-
Confidence 4568877666 66666555 2367778888888753110 1 11234555554442 2200
Q ss_pred hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHH
Q 003214 191 LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYT 270 (838)
Q Consensus 191 ~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~ 270 (838)
...++..+++++..+...--|+.+. +.+...++.+.+.++..- .+ ..++..+++++..++.
T Consensus 143 --~~~~r~~al~~l~~l~~~~~~~~~~--~~~~~ll~~l~~~l~~~~------~~---------~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 143 --TEHMKESTLEAIGYICQDIDPEQLQ--DKSNEILTAIIQGMRKEE------PS---------NNVKLAATNALLNSLE 203 (876)
T ss_dssp --CHHHHHHHHHHHHHHHHHSCHHHHG--GGHHHHHHHHHHHHSTTC------SC---------HHHHHHHHHHHHHHGG
T ss_pred --CHHHHHHHHHHHHHHHHhcCHhhHH--hHHHHHHHHHHHhhcCCC------CC---------HHHHHHHHHHHHHHHH
Confidence 1356777888888776421122222 456667777777665420 01 2567788888887754
Q ss_pred HhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHH-HHHHH
Q 003214 271 RFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLD-VLLFE 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~-~li~~ 349 (838)
.++. .. .. .. + ...+++.+...+ . ..++++...+++.+..+++. .++.+.+++. .++..
T Consensus 204 ~~~~-~~-~~--~~----~----~~~il~~l~~~~----~--~~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~ 263 (876)
T 1qgr_A 204 FTKA-NF-DK--ES----E----RHFIMQVVCEAT----Q--CPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAI 263 (876)
T ss_dssp GCHH-HH-TS--HH----H----HHHHHHHHHHHT----T--CSSHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHH
T ss_pred HHHH-HH-Hh--HH----H----HHHHHHHHHHHc----C--CCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence 2210 00 00 00 0 011233333222 1 12457777888888877643 2334566665 54443
Q ss_pred hHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhc------------------------ccch
Q 003214 350 IVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKR------------------------GKEN 405 (838)
Q Consensus 350 ~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~------------------------~~~~ 405 (838)
++ ..+. +. ....|..|.+++..+++.. .+..
T Consensus 264 ~~-~~~~--~~----------------------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 264 TI-EAMK--SD----------------------IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HH-HHHT--CS----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HH-HHhc--CC----------------------chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 22 2111 00 0113333333443333221 0012
Q ss_pred HHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHH
Q 003214 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 485 (838)
Q Consensus 406 ~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 485 (838)
+..++..+.+.+....++. +.++|..|.++..+++.++..+.+. . ++.++ +.+...+.++++.+|..|++++|
T Consensus 319 ~~~ll~~ll~~l~~~~~d~-~~~~~~~r~~a~~~l~~l~~~~~~~--~---~~~~l-~~l~~~l~~~~~~~r~~a~~~l~ 391 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDEND-DDDDWNPCKAAGVCLMLLATCCEDD--I---VPHVL-PFIKEHIKNPDWRYRDAAVMAFG 391 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSC-CTTCCCHHHHHHHHHHHHHHHHGGG--G---HHHHH-HHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhhcccccc-cccccHHHHHHHHHHHHHHHHCcHh--h---HHHHH-HHHHHHccCCChHHHHHHHHHHH
Confidence 2344444445554332221 1357999999999999999887642 2 22322 33444567788999999999999
Q ss_pred hhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc--hhhHH
Q 003214 486 QYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE--NEDLV 561 (838)
Q Consensus 486 ~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~--~~~l~ 561 (838)
.+++....+ ...+..+++.++..++|++..||..|+.++.++++.........|+++.++..++..+++.. .....
T Consensus 392 ~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~ 471 (876)
T 1qgr_A 392 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471 (876)
T ss_dssp HTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998643101 13567889999999999999999999999999999864111256899999999999987621 12356
Q ss_pred HHHHHHHHhhc--------------ccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC
Q 003214 562 FTLETIVDKFG--------------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 627 (838)
Q Consensus 562 ~~l~~iv~~~~--------------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~ 627 (838)
.++..++..++ +.+.||...+++.|.. .+.....+ + ...+..++++++.++..++.
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~----~l~~~~~~-----~-~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE----TTDRPDGH-----Q-NNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHH----HTTSCSSC-----S-TTHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHH----HHhCcCcc-----h-hhHHHHHHHHHHHHHHHCch
Confidence 77788887765 3488999999988876 33322111 1 12456789999999999875
Q ss_pred ChHHHHHHHhhHHHHHHHHhcc-----------Ch----hhHHHHHHHHHHHhhhcCC--CCCHhhhHhHHHHHHHHhhh
Q 003214 628 LPHLFVQIEPTLLPIMRRMLTT-----------DG----QEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALADW 690 (838)
Q Consensus 628 ~~~~~~~l~~~~~p~i~~~l~~-----------~~----~~~~~~~l~ll~~~~~~~~--~~~~~l~~l~~~l~~~~~~~ 690 (838)
+. ..+...++|.+...+.. +. .+....++..+..++...+ .+.|.+..++|.+++.+...
T Consensus 542 ~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~ 618 (876)
T 1qgr_A 542 DC---YPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQST 618 (876)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC---
T ss_pred hh---HHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhc
Confidence 32 22334555555444431 11 2345667788888876544 34566778888888887543
Q ss_pred H--hhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHH
Q 003214 691 A--IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPY 768 (838)
Q Consensus 691 ~--~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~i 768 (838)
. .......+..+.+++...+..+. +|+..++..+.+.+.+.. ...-+..++.++..++..++..+.++++.+
T Consensus 619 ~~~~~v~~~a~~~l~~l~~~~~~~~~-----~~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i 692 (876)
T 1qgr_A 619 AGSGGVQEDALMAVSTLVEVLGGEFL-----KYMEAFKPFLGIGLKNYA-EYQVCLAAVGLVGDLCRALQSNIIPFCDEV 692 (876)
T ss_dssp --CCHHHHHHHHHHHHHHHHHGGGGG-----GGHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 2 13456677778777776555555 677888888888886431 112235678899999999888888999999
Q ss_pred HHHHHHHHhhh-hhhHHHHHHHHHHH
Q 003214 769 LRITVERLRRA-EKSYLKCLLVQVIA 793 (838)
Q Consensus 769 l~~~l~~l~~~-~~~~~~~~~l~v~~ 793 (838)
+..++..+.+. .+..++...+..+.
T Consensus 693 ~~~l~~~l~~~~~~~~~~~~~~~~l~ 718 (876)
T 1qgr_A 693 MQLLLENLGNENVHRSVKPQILSVFG 718 (876)
T ss_dssp HHHHHHHHTCTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHhCCccccHHhhHHHHHHHH
Confidence 99999988762 22334444443333
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.79 E-value=1.7e-14 Score=175.30 Aligned_cols=653 Identities=13% Similarity=0.152 Sum_probs=407.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhc-------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214 9 ILQGALSPNPEERKAAEHSLNQFQY-------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (838)
Q Consensus 9 ~L~~~ls~d~~~r~~Ae~~L~~~~~-------~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l 81 (838)
+++...++++.+|+++-+.|..+-+ -|++...|.+.+.++ .+..+|..|...++...+. |.... .+
T Consensus 100 ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~~~~~r~~al~~l~~l~~~-~~~~~-----~~ 172 (861)
T 2bpt_A 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-QPENVKRASLLALGYMCES-ADPQS-----QA 172 (861)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHT-SSTTS-----ST
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHc-CChhh-----hH
Confidence 3445556788999999988887643 234566666666442 2678999888777776653 54210 01
Q ss_pred ChhhHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHh---hCC--CCChhHHHHHHHHhhhh--h-HHHHHHHHHHHH
Q 003214 82 SQVDKDMVRDHILVFVAQV--PPLLRVQLGECLKTIIHA---DYP--EQWPHLLDWVKHNLQDQ--Q-VYGALFVLRILS 151 (838)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~--~~~i~~~~~~~i~~Ia~~---d~p--~~Wp~ll~~l~~~l~s~--~-~~~~L~~L~~i~ 151 (838)
-......|-..+++++.++ +..+|.....+++.++.. .+. ..|+.+++.+.+.++++ . ...++.+|..++
T Consensus 173 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~ 252 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM 252 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1334556777777777766 788999999998876431 221 13677888888887665 3 367889999999
Q ss_pred HHcccCCccCcchHHHHHH-HHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhc----------------CCc
Q 003214 152 RKYEFKSDEERTPVYRIVE-ETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLE----------------IPK 214 (838)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~----------------~p~ 214 (838)
+.+. + .+...+. .+++ ++...+.+. ...++..++.++..+.... .+.
T Consensus 253 ~~~~----~---~~~~~l~~~l~~----~~~~~~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 253 SKYY----T---FMKPYMEQALYA----LTIATMKSP-----NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHG----G---GCHHHHHHTHHH----HHHHHTTCS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHH----H---HHHHHHHHHHHH----HHHHHHcCC-----cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 8752 1 1222222 2333 333333322 2355666666666554321 011
Q ss_pred ccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhH
Q 003214 215 QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYA 294 (838)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~ 294 (838)
.. .+.+...++.++..+.... .|+++ .-|.+++.+.+.+..+...+++. ..
T Consensus 317 ~~--~~~~~~il~~ll~~l~~~~------~d~~d----~~~~~r~~a~~~L~~l~~~~~~~-----------------~~ 367 (861)
T 2bpt_A 317 FA--LSSIKDVVPNLLNLLTRQN------EDPED----DDWNVSMSAGACLQLFAQNCGNH-----------------IL 367 (861)
T ss_dssp HH--HHHHHHHHHHHHHHTTCCC------CC-CC----CCCHHHHHHHHHHHHHHHHHGGG-----------------GH
T ss_pred HH--HHHHHHHHHHHHHHHHhcc------ccccc----ccCcHHHHHHHHHHHHHHHccHh-----------------HH
Confidence 11 1334556666666555321 11111 11467788888888888776521 23
Q ss_pred HHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHH
Q 003214 295 GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVR 374 (838)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~ 374 (838)
+.+++.+.+.+.. . ..+.+..++..+..+++... ...+.+++..++..++ +.+ .||
T Consensus 368 ~~l~~~l~~~l~~---~---~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~-~~l-----------~d~----- 423 (861)
T 2bpt_A 368 EPVLEFVEQNITA---D---NWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSIL-NLM-----------NDQ----- 423 (861)
T ss_dssp HHHHHHHHHHTTC---S---SHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHH-HGG-----------GCS-----
T ss_pred HHHHHHHHHHcCC---C---ChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH-HHc-----------CCC-----
Confidence 3444444433321 1 34566677777777765321 1334566666555432 222 122
Q ss_pred HhcccccccCCHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhc
Q 003214 375 KGYDIIEDLYSPRTASMDFVSELVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ 449 (838)
Q Consensus 375 ~~~d~~~d~~s~r~~a~~ll~~l~~~~~-----~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~ 449 (838)
...+|.+|...+..++...+ ...++.+++.+.+.+.. ++..+.++..+++.++..+.+
T Consensus 424 --------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~---------~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 424 --------SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD---------HPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS---------CHHHHHHHHHHHHHHHHHHSS
T ss_pred --------cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc---------ChHHHHHHHHHHHHHHHhccc
Confidence 12367777778888877654 34577777776666642 378899999999999988752
Q ss_pred --CCcchHHHHHHHhhcccccccC--CCcchhhHHHHHHHhhhccccCC-hhHHHHHHHHHHhcCCC-------------
Q 003214 450 --TEPYKSELERMLVQHVFPEFSS--PVGHLRAKAAWVAGQYAHINFSD-QNNFRKALHSVVSGLRD------------- 511 (838)
Q Consensus 450 --~~~~~~~~~~~l~~~v~p~l~~--~~~~lr~ra~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~------------- 511 (838)
...+...++.++. .+.+.+.+ .++-+|..++.+++.+.+..... ...+..+++.++..+.+
T Consensus 487 ~~~~~l~~~~~~il~-~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~ 565 (861)
T 2bpt_A 487 ATPSPIYNFYPALVD-GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLED 565 (861)
T ss_dssp SSSCGGGGGHHHHHH-HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHH
T ss_pred ccchhhHHHHHHHHH-HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhh
Confidence 1222233344432 34444553 34789999999999987643111 13455556656555432
Q ss_pred --CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch----hhHHHHHHHHHHhhcccchhhHHHHHHH
Q 003214 512 --PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQN 585 (838)
Q Consensus 512 --~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~ 585 (838)
....+|..++.+|..++.... +.+.||++.++..++..++..+. +....+++.++...++++.||.+.+++.
T Consensus 566 ~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 566 AQSLQELQSNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 133478899999999998864 57899999999999999876543 2366788899999999999999999988
Q ss_pred HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh--hhHHHHHHHHHH
Q 003214 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QEVFEEVLEIVS 663 (838)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~--~~~~~~~l~ll~ 663 (838)
+... ++. .++ -.+...+.+++.++.++++. +..+.+.++|.+...+..+. .+..+.++..+.
T Consensus 644 l~~~----l~~--~~~-------~vr~~a~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 644 LLKA----LNQ--VDS-------PVSITAVGFIADISNSLEED---FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp HHHH----HHC--TTS-------HHHHHHHHHHHHHHHHTGGG---GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred HHHH----hcc--ccH-------HHHHHHHHHHHHHHHHhchh---ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 8763 321 111 24556788899999988742 33455778888877776543 578888998888
Q ss_pred HhhhcC-CCCCHhhhHhHHHHHHHHhh-------hHhhh----hhhhhhhhhhhhccCc---ccccccCCchHHHHHHHH
Q 003214 664 YMTFFS-PTISLEMWSLWPLMMEALAD-------WAIDF----FPNILVPLDNYISRGT---AHFLTCKEPDYQQSLWSM 728 (838)
Q Consensus 664 ~~~~~~-~~~~~~l~~l~~~l~~~~~~-------~~~~~----l~~~~~~L~~~i~~~~---~~~l~~~~~~~~~~l~~~ 728 (838)
.++... +.+.|.+-.++|.+.+.+.. +..++ ...++..+...+..-+ +.+. +|+..++..
T Consensus 708 ~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~-----~~~~~i~~~ 782 (861)
T 2bpt_A 708 DIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF-----PYVGTIFQF 782 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG-----GGHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-----HHHHHHHHH
Confidence 887654 45667777888888887641 11112 2334444444443222 2232 688888888
Q ss_pred HHHHhcCCCC--CCCccCchhHHHHHHHHHc-ccCcccchH-HHHHHHHHHHhh
Q 003214 729 VSSIMADKNL--EDGDIEPAPKLIEVVFQNC-KGQVDHWVE-PYLRITVERLRR 778 (838)
Q Consensus 729 ~~~~l~~~~~--~~~~~~~~~~ll~~i~~~~-~~~~~~~l~-~il~~~l~~l~~ 778 (838)
+.+.+.+... ++.-...++.++..+...+ |+.+.++++ .++..+++++..
T Consensus 783 l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 783 IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp HHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhh
Confidence 8888753210 2223467899999999999 667899999 899999998874
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.62 E-value=1.8e-12 Score=163.23 Aligned_cols=606 Identities=13% Similarity=0.106 Sum_probs=358.3
Q ss_pred HHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003214 38 LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIH 117 (838)
Q Consensus 38 ~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~ 117 (838)
+..|++-+. +.|..+|..|.--|++.+++... .++++....+...+++.+.+++..+|...+.+++.++.
T Consensus 8 l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~--------~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 8 ISNLLEKMT--SSDKDFRFMATNDLMTELQKDSI--------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCC--------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CCCHhHHHHHHHHHHHHHccccc--------CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 334444443 35789999999999887765433 24555666777889999988999999999999999997
Q ss_pred hhCCCCChhHHHHHHHHhhhh--hH-HHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHH
Q 003214 118 ADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVA 194 (838)
Q Consensus 118 ~d~p~~Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 194 (838)
.--+..|+.+++.++..+.++ .+ ..+..+|..++..+.... ..........+.++|.+...+.. +. ..
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~~---~~-----~~ 148 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIAK---QE-----DV 148 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSC---CS-----CH
T ss_pred hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHcC---CC-----ch
Confidence 644457889999999998776 33 677889999998763210 00111234556677776654421 11 13
Q ss_pred HHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCC
Q 003214 195 DLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGD 274 (838)
Q Consensus 195 ~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~ 274 (838)
..+..++.++..+... .+..+. +.+...++.+...+..+ + ..+|+.+.+.+..+....++
T Consensus 149 ~~~~~al~~l~~~~~~-~~~~l~--~~~~~ll~~l~~~L~~~--------~---------~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSR-QGGLLV--NFHPSILTCLLPQLTSP--------R---------LAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHHH-TCSSCT--TTHHHHHHHHGGGGGCS--------S---------HHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHH-hHhHHH--HHHHHHHHHHHHHHcCC--------c---------HHHHHHHHHHHHHHHHhcCH
Confidence 5677778888766532 233332 35667777766665431 1 15778888888777653221
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhcc
Q 003214 275 LKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPL 354 (838)
Q Consensus 275 ~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~ 354 (838)
. + .+.++..+++.+..... ...+..+++.+..++... .+.+.+++..++..++ ..
T Consensus 209 ~-------------~----~~~~l~~l~~~L~~~~~-----~~~r~~a~~~l~~l~~~~--~~~~~~~l~~l~~~ll-~~ 263 (1230)
T 1u6g_C 209 I-------------V----FVDLIEHLLSELSKNDS-----MSTTRTYIQCIAAISRQA--GHRIGEYLEKIIPLVV-KF 263 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHTCS-----SCSCTTHHHHHHHHHHHS--SGGGTTSCTTHHHHHH-HH
T ss_pred H-------------H----HHHHHHHHHHHhccCCc-----hhHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH-HH
Confidence 0 1 12234444444433211 111222333333333211 1134555555544332 21
Q ss_pred ccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccch---HHHHHHHHHHHhcccc----------
Q 003214 355 MCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN---LQKFIQFIVGIFKRYD---------- 421 (838)
Q Consensus 355 l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~---~~~il~~~~~~l~~~~---------- 421 (838)
+. | +....|.+|...+..+++..++++ ++.++..+.+.+..-.
T Consensus 264 l~---------------------d---~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 264 CN---------------------V---DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HS---------------------S---CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred hc---------------------C---CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 11 1 113478899999999999887653 3334433332222100
Q ss_pred ----C---CC------------CCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh---cccccccCCCcchhhH
Q 003214 422 ----E---TP------------VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ---HVFPEFSSPVGHLRAK 479 (838)
Q Consensus 422 ----~---~~------------~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~---~v~p~l~~~~~~lr~r 479 (838)
. .. .+...|+.|.++..+++.++....+ .+.+++.. .+...+.+.++-+|..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~------~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE------MLPEFYKTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCT------THHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 0 00 0113599999999999988863221 12233322 1222345678889988
Q ss_pred HHHHHHhhhccccC---------------C-----hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc
Q 003214 480 AAWVAGQYAHINFS---------------D-----QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (838)
Q Consensus 480 a~~~l~~~~~~~~~---------------~-----~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (838)
++-+++.+....-. . ...++.+++.+.+.+++++..+|..++.++..++... ++.+.|
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~--~~~l~~ 471 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL--PGALTQ 471 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS--TTTTGG
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc--hhhhHH
Confidence 88877766431100 0 1245667777777799988899999999999999885 567889
Q ss_pred chHHHHHHHHHHhhhhch--hh---HHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 003214 540 ILPQLLDEFFKLMNEVEN--ED---LVFTLETIVDKFGEE-MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVG 613 (838)
Q Consensus 540 ~l~~il~~L~~ll~~~~~--~~---l~~~l~~iv~~~~~~-i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 613 (838)
+++.++..++..+++... +. ....+..++...+.+ +.||...+++.+.. ..+ |+ ....+..
T Consensus 472 ~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~l~----d~-----~~~v~~~ 538 (1230)
T 1u6g_C 472 HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA----CVG----DP-----FYKITSE 538 (1230)
T ss_dssp GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH----HHT----CS-----SHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH----HHc----cc-----chHHHHH
Confidence 999999999999986532 22 344555555555544 78888888777765 222 21 1223445
Q ss_pred HHHHHHHHHHhhcC----ChHHHHHHHhhHHHHHHHHhc--cChhhHHHHHHHHHHHhhhcCC-CCCHhhhHhHHHHHHH
Q 003214 614 CLRAISTILESVSR----LPHLFVQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYMTFFSP-TISLEMWSLWPLMMEA 686 (838)
Q Consensus 614 ~l~~i~~i~~~~~~----~~~~~~~l~~~~~p~i~~~l~--~~~~~~~~~~l~ll~~~~~~~~-~~~~~l~~l~~~l~~~ 686 (838)
.+.++..+++.++. .+..+.++.+.++|.+...+. ....+..+.++..+..++...+ .+.+.+..+++.+.+.
T Consensus 539 al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~ 618 (1230)
T 1u6g_C 539 ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLER 618 (1230)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHH
Confidence 68889999988865 111233455778888877774 3445778888888888887653 4556666666666655
Q ss_pred HhhhHhhhhhhhhhhhhhhhcc-CcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCc
Q 003214 687 LADWAIDFFPNILVPLDNYISR-GTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV 761 (838)
Q Consensus 687 ~~~~~~~~l~~~~~~L~~~i~~-~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~ 761 (838)
+.+. .........+...... .+.. -..+...++..+.+.+.+.. ..-...++..+..++.+.+..+
T Consensus 619 l~~e--~~r~~~~~al~~i~~~~~~~~-----~~~~~~~i~~~L~~~l~~~~--~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 619 LKNE--ITRLTTVKALTLIAGSPLKID-----LRPVLGEGVPILASFLRKNQ--RALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp TTSS--SHHHHHHHHHHHHTTCSSCCC-----CHHHHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHHHHHCCTTC
T ss_pred hccc--hhHHHHHHHHHHHHhCccccc-----hHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcccccC
Confidence 4321 0111222222211110 1111 12577777777777765331 1223467888888888887543
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.42 E-value=3.7e-10 Score=130.47 Aligned_cols=526 Identities=13% Similarity=0.071 Sum_probs=312.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHHh-cCcChhhHHHHHHHHHHhhhhcCCCCCCCCC
Q 003214 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQ---HLVRLLQIIVD-NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (838)
Q Consensus 3 ~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~---f~~~Ll~i~~~-~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~ 78 (838)
...+..++....|+|+.+|..|.+.|......-| .+..++..+.. .+.+..+|..++-.|.+..... ..
T Consensus 9 ~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~-~~------ 81 (588)
T 1b3u_A 9 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLV-GG------ 81 (588)
T ss_dssp SHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGG-TS------
T ss_pred cCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc-Cc------
Confidence 4678889999999999999999999987654211 22223333322 1336789999998887544321 11
Q ss_pred CCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHc
Q 003214 79 QKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (838)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~ 154 (838)
++....+-..|..++.+++..+|...+.+++.++..--+ ..|+.+++.+.++.+++ ....+..++..+....
T Consensus 82 ----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~ 157 (588)
T 1b3u_A 82 ----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV 157 (588)
T ss_dssp ----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred ----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 111122333444445678899999999999999975332 23677888887777665 2355666676665432
Q ss_pred ccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhc
Q 003214 155 EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE 234 (838)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 234 (838)
+ ....+.++|.+..+ ..+. ...++..+++.+..+... .+. .......++.+...++
T Consensus 158 ----~------~~~~~~l~~~l~~l----~~d~-----~~~VR~~a~~~l~~l~~~-~~~----~~~~~~l~~~l~~~~~ 213 (588)
T 1b3u_A 158 ----S------SAVKAELRQYFRNL----CSDD-----TPMVRRAAASKLGEFAKV-LEL----DNVKSEIIPMFSNLAS 213 (588)
T ss_dssp ----C------HHHHHHHHHHHHHH----HTCS-----CHHHHHHHHHHHHHHHHT-SCH----HHHHHTHHHHHHHHHT
T ss_pred ----C------HHHHHHHHHHHHHH----hCCC-----CHHHHHHHHHHHHHHHHH-hcH----HhHHHHHHHHHHHHhc
Confidence 1 12234455555443 3322 256778888888766532 121 1222334555555443
Q ss_pred CCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCccc
Q 003214 235 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 314 (838)
Q Consensus 235 ~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (838)
. .+ +.+++.+++.+..+....+. + . ..+.++..+...+.. .
T Consensus 214 d--------~~---------~~vr~~a~~~l~~l~~~~~~------~------~----~~~~~~~~l~~~~~d------~ 254 (588)
T 1b3u_A 214 D--------EQ---------DSVRLLAVEACVNIAQLLPQ------E------D----LEALVMPTLRQAAED------K 254 (588)
T ss_dssp C--------SC---------HHHHTTHHHHHHHHHHHSCH------H------H----HHHHTHHHHHHHHTC------S
T ss_pred C--------Cc---------HHHHHHHHHHHHHHHHhCCH------H------H----HHHHHHHHHHHHccC------C
Confidence 2 11 25667788888877765421 1 0 112222223232211 1
Q ss_pred CHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHH
Q 003214 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV 394 (838)
Q Consensus 315 ~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll 394 (838)
+.+++..+.+.+..+...... .. ....++..++ ..+ .| +...+|.+|...+
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~-~~---~~~~l~~~l~-~~l-----------~d-------------~~~~vr~~a~~~l 305 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGP-EI---TKTDLVPAFQ-NLM-----------KD-------------CEAEVRAAASHKV 305 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCH-HH---HHHTHHHHHH-HHH-----------TC-------------SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCc-cc---chhHHHHHHH-HHh-----------CC-------------CcHHHHHHHHHHH
Confidence 345566666555544321100 00 0111111111 100 01 1134788899999
Q ss_pred HHHHhhcccc-----hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccc
Q 003214 395 SELVRKRGKE-----NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF 469 (838)
Q Consensus 395 ~~l~~~~~~~-----~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l 469 (838)
..+++..+.+ ..+.+++.+.+.++. .+|..|.++..+++.++..+.+.. ....+.+ .+...+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d--------~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~p----~l~~~l 372 (588)
T 1b3u_A 306 KEFCENLSADCRENVIMSQILPCIKELVSD--------ANQHVKSALASVIMGLSPILGKDN-TIEHLLP----LFLAQL 372 (588)
T ss_dssp HHHHHTSCTTTHHHHHHHTHHHHHHHHHTC--------SCHHHHHHHHTTGGGGHHHHCHHH-HHHHTHH----HHHHHH
T ss_pred HHHHHHhChhhhhhHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHHhhHhH-HHHHHHH----HHHHHh
Confidence 9999887653 345566665555542 489999999999999987764321 1111222 233345
Q ss_pred cCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 003214 470 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 549 (838)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~ 549 (838)
+++++-+|..++..++.+.+.. ........+++.+...+.|++..||..++.++..+..... .+.+ .+.++..++
T Consensus 373 ~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~---~~~l~~~l~ 447 (588)
T 1b3u_A 373 KDECPEVRLNIISNLDCVNEVI-GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-VEFF---DEKLNSLCM 447 (588)
T ss_dssp TCSCHHHHHHHHTTCHHHHHHS-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-GGGC---CHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC-HHHH---HHHHHHHHH
Confidence 6778899999999999887642 2223457788888888889888999999999999988764 3332 345666777
Q ss_pred HHhhhhchh---hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 003214 550 KLMNEVENE---DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (838)
Q Consensus 550 ~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~ 626 (838)
.++++.+.+ ....++..++..++++ .+...+++.+. +.. .++ ....+...+.+++.+...++
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~----~~~----~~~-----~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVL----AMS----GDP-----NYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHH----HTT----TCS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHH----HHh----hCC-----CHHHHHHHHHHHHHHHHhcC
Confidence 777654332 3567777788777653 12333443333 221 122 24567788899999988876
Q ss_pred CChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q 003214 627 RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 627 ~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~ 669 (838)
... +.+.++|.+...+..+..+....++..+..+....
T Consensus 513 ~~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 513 QDI-----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHH-----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred HHH-----HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh
Confidence 321 34678888888887766778888888888877543
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.38 E-value=2.7e-10 Score=131.61 Aligned_cols=525 Identities=12% Similarity=0.068 Sum_probs=305.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CCChHHHHHHHHHh--cCcChhhHHHHHHHHHHhhhhcCCCCCCCCC
Q 003214 4 PSLALILQGALSPNPEERKAAEHSLNQFQY---TPQHLVRLLQIIVD--NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (838)
Q Consensus 4 ~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~---~p~f~~~Ll~i~~~--~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~ 78 (838)
+++...|....+++.++|..+-..|..+.. .+.+...++.++.. .+.+..+|..|+-.+++....
T Consensus 48 ~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~---------- 117 (588)
T 1b3u_A 48 SELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---------- 117 (588)
T ss_dssp HTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH----------
Confidence 356777777778899999999999987654 23344444443321 134789999999999887643
Q ss_pred CCCChh-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh--h-HHHHHHHHHHHHHHc
Q 003214 79 QKISQV-DKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q-VYGALFVLRILSRKY 154 (838)
Q Consensus 79 ~~l~~e-~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~-~~~~L~~L~~i~~~~ 154 (838)
++++ .+..+-..+.++..+++..+|...+.+++.++..--+..|+++++.+.+.++++ . ...+..+|..+++..
T Consensus 118 --~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~ 195 (588)
T 1b3u_A 118 --HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL 195 (588)
T ss_dssp --SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS
T ss_pred --CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 2322 222333333333345678899999999998876533356889999999888766 3 367788888888754
Q ss_pred ccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhc
Q 003214 155 EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE 234 (838)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 234 (838)
. . ....+.++|.+.. +++++ ...++..+++++..+... ++. .......++.+...++
T Consensus 196 ~---~------~~~~~~l~~~l~~----~~~d~-----~~~vr~~a~~~l~~l~~~-~~~----~~~~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 196 E---L------DNVKSEIIPMFSN----LASDE-----QDSVRLLAVEACVNIAQL-LPQ----EDLEALVMPTLRQAAE 252 (588)
T ss_dssp C---H------HHHHHTHHHHHHH----HHTCS-----CHHHHTTHHHHHHHHHHH-SCH----HHHHHHTHHHHHHHHT
T ss_pred c---H------HhHHHHHHHHHHH----HhcCC-----cHHHHHHHHHHHHHHHHh-CCH----HHHHHHHHHHHHHHcc
Confidence 2 1 1223445555443 33322 245677777777665432 221 1222334444444443
Q ss_pred CCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCccc
Q 003214 235 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 314 (838)
Q Consensus 235 ~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (838)
. + -|++|+.+.+.+..+....+. + . +.+.++..+.+.+.. .
T Consensus 253 d----------~-------~~~vR~~a~~~l~~l~~~~~~------~------~----~~~~l~~~l~~~l~d------~ 293 (588)
T 1b3u_A 253 D----------K-------SWRVRYMVADKFTELQKAVGP------E------I----TKTDLVPAFQNLMKD------C 293 (588)
T ss_dssp C----------S-------SHHHHHHHHHTHHHHHHHHCH------H------H----HHHTHHHHHHHHHTC------S
T ss_pred C----------C-------CHHHHHHHHHHHHHHHHHhCc------c------c----chhHHHHHHHHHhCC------C
Confidence 1 1 167888888888888776531 1 1 122334444444421 1
Q ss_pred CHHHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHH
Q 003214 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV 394 (838)
Q Consensus 315 ~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll 394 (838)
...+...+...+..++..-.......+.+..++..+. . .-.| ..+..|.++...+
T Consensus 294 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~-~-----------~l~d-------------~~~~vR~~a~~~l 348 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK-E-----------LVSD-------------ANQHVKSALASVI 348 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH-H-----------HHTC-------------SCHHHHHHHHTTG
T ss_pred cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHH-H-----------HhcC-------------CCHHHHHHHHHHH
Confidence 3445555555554443211000000012222222111 0 0011 1245788888888
Q ss_pred HHHHhhcccch-HHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCC
Q 003214 395 SELVRKRGKEN-LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV 473 (838)
Q Consensus 395 ~~l~~~~~~~~-~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~ 473 (838)
..++...|++. .+.++..+...+.. .++..|.+++.+++.+...+... .+...+.+ .+...+.+++
T Consensus 349 ~~l~~~~~~~~~~~~l~p~l~~~l~d--------~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~lp----~l~~~~~d~~ 415 (588)
T 1b3u_A 349 MGLSPILGKDNTIEHLLPLFLAQLKD--------ECPEVRLNIISNLDCVNEVIGIR-QLSQSLLP----AIVELAEDAK 415 (588)
T ss_dssp GGGHHHHCHHHHHHHTHHHHHHHHTC--------SCHHHHHHHHTTCHHHHHHSCHH-HHHHHHHH----HHHHHHTCSS
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHHHHhcCHH-HHHHHHHH----HHHHHhcCCC
Confidence 88888776543 34455555555542 36789999999999888764321 01111222 2333446778
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhh
Q 003214 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 553 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 553 (838)
..+|..++.+++.++... ........+++.++..++|++..||..|+.++..++.... .+ .+.+.++..+..+.+
T Consensus 416 ~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~---~~~~~llp~l~~~~~ 490 (588)
T 1b3u_A 416 WRVRLAIIEYMPLLAGQL-GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG-KE---WAHATIIPKVLAMSG 490 (588)
T ss_dssp HHHHHHHHHHHHHHHHHH-CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-HH---HHHHHTHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHhh
Confidence 889999999999987532 1111235678888999999888899999999999998754 22 134555555555554
Q ss_pred hhchh---hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChH
Q 003214 554 EVENE---DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPH 630 (838)
Q Consensus 554 ~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~ 630 (838)
+.+.. ....+++.+...++.+ +|...+++.+.. ..+ |+ ....+..++.+++.+...++..
T Consensus 491 ~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~----~l~----d~-----~~~Vr~~a~~~l~~l~~~~~~~-- 553 (588)
T 1b3u_A 491 DPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLR----MAG----DP-----VANVRFNVAKSLQKIGPILDNS-- 553 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHH----GGG----CS-----CHHHHHHHHHHHHHHGGGSCHH--
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHh----hCC----CC-----CchHHHHHHHHHHHHHHHhchh--
Confidence 33222 2456666666666543 244444444432 221 22 1345778889999998877532
Q ss_pred HHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHh
Q 003214 631 LFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM 665 (838)
Q Consensus 631 ~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~ 665 (838)
. +.+.+.|.+...++....+....+..-+..+
T Consensus 554 ~---~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 554 T---LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp H---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred h---hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 1 2367889888876555566666666655544
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.14 E-value=6.1e-06 Score=100.96 Aligned_cols=714 Identities=12% Similarity=0.084 Sum_probs=359.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC------CChHHHHHHHHHhc--C-cChhhHHHHHHHHHHhhh----hcCC
Q 003214 5 SLALILQGALSPNPEERKAAEHSLNQFQYT------PQHLVRLLQIIVDN--N-CDLSVRQVASIHFKNFIA----KNWA 71 (838)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~------p~f~~~Ll~i~~~~--~-~~~~iR~~Aai~lKn~i~----~~W~ 71 (838)
.|.+.+...-++.+.+|.+.-..+..+-++ |++...|.+.+.+. + .+...+..+...|+.... ..+.
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~ 183 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLP 183 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCc
Confidence 444555443223578888888887776543 56677777765330 0 133455666666655442 1220
Q ss_pred C-CCCCCCCCCChhhHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhhhh-hHHHHHHH
Q 003214 72 P-HEPNEQQKISQVDKDMVRDHILVFVAQV--PPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-QVYGALFV 146 (838)
Q Consensus 72 ~-~~~~~~~~l~~e~k~~ir~~ll~~l~~~--~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~-~~~~~L~~ 146 (838)
. +.......+.. .-..|-+.+.+.+... +..++.+...|+...+...++ ..++.+++.+++.+.++ ....++.|
T Consensus 184 ~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~ 262 (963)
T 2x19_B 184 QYRKGLVRTSLAV-ECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEA 262 (963)
T ss_dssp --------CCSGG-GHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHH
Confidence 0 00000112222 2233444445555432 224777777777766665554 35789999999988766 45778899
Q ss_pred HHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHH---hcccCCchhHHHHHHHHHHHhHHhhhhcCCcccC----Ch
Q 003214 147 LRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRL---VQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLL----DP 219 (838)
Q Consensus 147 L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~---~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~----~~ 219 (838)
+.+++..... .+ ....+..++|.+.+....+ ...++ ....+.++++|..+.... +..+. ..
T Consensus 263 l~~i~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~ 330 (963)
T 2x19_B 263 IVNAISQPDA--QR----YVNTLLKLIPLVLGLQEQLRQAVQNGD-----METSHGICRIAVALGENH-SRALLDQVEHW 330 (963)
T ss_dssp HHHHHTCTTG--GG----CHHHHHHHHHHHHTTHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH-HHHHHHCGGGH
T ss_pred HHHHHccccc--cc----CHHHHHHHHHHHHhhHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHh-HHHHHcCccch
Confidence 9999864311 11 1234445555554432221 11111 133444556665443211 11111 23
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhh-HHHHHHHHHHhHHHHH
Q 003214 220 NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPEN-RAFAQMFQKNYAGKIL 298 (838)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~-~~f~~~f~~~~~~~~~ 298 (838)
+.+..+++.++.+...+- . ...|++ +...++.....+.+.+... +.+. ..... ...++.+.++
T Consensus 331 ~~~~~~l~~ll~~~~~~~--~-~~~~~~---------v~~~~l~fw~~l~~~~~~~---~~~~~~~~~~-~~~~~l~~l~ 394 (963)
T 2x19_B 331 QSFLALVNMIMFCTGIPG--H-YPVNET---------TSSLTLTFWYTLQDDILSF---EAEKQAVYQQ-VYRPVYFQLV 394 (963)
T ss_dssp HHHHHHHHHHHHHHTCSS--C-TTTTCG---------GGGGGHHHHHHHHHHHTTS---CHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--C-CCchhh---------hhhhhHHHHHHHHHHHHhh---hhhhhHHHHH-HHHHHHHHHH
Confidence 566777777777655421 0 011221 1123455555555532111 1110 11111 2223445555
Q ss_pred HHHHHHHHhhhCC----cccCH------HHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcC
Q 003214 299 ECHLNLLNRIRVG----GYLPD------RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDED 368 (838)
Q Consensus 299 ~~~~~~l~~~~~~----~~~~~------~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~D 368 (838)
..++..+.. ... .+..| ..+..+.+++..++. ...+.+-..+...+-. -+..+
T Consensus 395 ~~ll~~~~~-p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~------~~~~~~l~~~~~~l~~-------~l~~~--- 457 (963)
T 2x19_B 395 DVLLHKAQF-PSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYE------MLGAELLSNLYDKLGR-------LLTSS--- 457 (963)
T ss_dssp HHHHHHHSC-CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHH-------HHHTC---
T ss_pred HHHHHHHcC-CCcccccCCChhHHHHHHHHHHHHHHHHHHHHH------HccHHHHHHHHHHHHH-------HHHhc---
Confidence 555544421 000 01111 112222333322221 1111100101111100 00000
Q ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHH
Q 003214 369 PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (838)
Q Consensus 369 p~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~---~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~ 445 (838)
.+ ...|..|.+|...+..+++.... ..++.+++ .+.+... ++...+.++++++|..++
T Consensus 458 --------~~--~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~~l~~-----~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 458 --------EE--PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIPRISI-----SNVQLADTVMFTIGALSE 518 (963)
T ss_dssp --------CC--SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGGGSCC-----CSHHHHHHHHHHHHHTHH
T ss_pred --------CC--CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHHhCCC-----CcHHHHHHHHHHHHHHHH
Confidence 01 11355678888888888876543 33444443 3332211 256799999999999998
Q ss_pred HhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCC--CCchHHHHH
Q 003214 446 KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP--ELPVRVDSV 521 (838)
Q Consensus 446 ~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l~~~--~~~V~~~A~ 521 (838)
.+.+..+ .+..++ +.++..+.+ +.++.+||+.+.++++- .++. .++..+++.+...++.. +..++..+.
T Consensus 519 ~l~~~~~---~l~~vl-~~l~~~l~~--~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 519 WLADHPV---MINSVL-PLVLHALGN--PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp HHHHCHH---HHTTTH-HHHHHHTTC--GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHhCHH---HHHHHH-HHHHHHhCC--chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 7765322 222222 122233333 78999999999999752 1111 34677777777766542 345888899
Q ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHhhhh-----chh------hHHHHHHHHHHhhcccc---------------
Q 003214 522 FALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV-----ENE------DLVFTLETIVDKFGEEM--------------- 575 (838)
Q Consensus 522 ~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-----~~~------~l~~~l~~iv~~~~~~i--------------- 575 (838)
.|+..++.... .+...||+..+++.+...++.. +.+ ...++|..++..++...
T Consensus 592 eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 670 (963)
T 2x19_B 592 QALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV 670 (963)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------------
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCC
Confidence 99999987643 4677788888887777766431 111 13455666666665321
Q ss_pred ----hhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh
Q 003214 576 ----APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG 651 (838)
Q Consensus 576 ----~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~ 651 (838)
.| ...+.+.+.+.+.++.+...++ ......+..++..++..+++... ++.+.+++.+........
T Consensus 671 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-------~~v~e~~~~~l~~~~~~~~~~~~---~~l~~~~~~l~~~~~~~~ 739 (963)
T 2x19_B 671 PQGPNP-VVVVLQQVFQLIQKVLSKWLND-------AQVVEAVCAIFEKSVKTLLDDFA---PMVPQLCEMLGRMYSTIP 739 (963)
T ss_dssp --CCCH-HHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHSSSTTG---GGHHHHHHHHHHHHHHSC
T ss_pred CCCCCc-hHHHHHHHHHHHHHHHHhccCc-------hHHHHHHHHHHHHHHHhhccccc---ccHHHHHHHHHHHHHcCC
Confidence 11 1223333333333444332221 12233456677777777765421 222333333333332211
Q ss_pred hhHHHHHHHHHHHhhh--cCC-CCCHhhhHhHHHHHH----HHhh---hHhhhhhhhhhhhhhhhccCcccccccCCchH
Q 003214 652 QEVFEEVLEIVSYMTF--FSP-TISLEMWSLWPLMME----ALAD---WAIDFFPNILVPLDNYISRGTAHFLTCKEPDY 721 (838)
Q Consensus 652 ~~~~~~~l~ll~~~~~--~~~-~~~~~l~~l~~~l~~----~~~~---~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~ 721 (838)
....+.+++.++. ... .+.|.+.+++..+++ ++.+ ...+...+.+..+..++...+..++. .+..
T Consensus 740 ---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~--~~~~ 814 (963)
T 2x19_B 740 ---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC--ERLD 814 (963)
T ss_dssp ---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC--TTSC
T ss_pred ---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC--Cccc
Confidence 2356677777766 443 355666555544443 3332 13567788888899999888888874 2222
Q ss_pred HHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc-C-----cccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 003214 722 QQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-Q-----VDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADA 795 (838)
Q Consensus 722 ~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~-~-----~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~ 795 (838)
.+.++..+...+..+ +......++..+..++...++ . +.++.+.++..++..+.+.........+..++..+
T Consensus 815 ~~~i~~~~~~~l~~~--~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l 892 (963)
T 2x19_B 815 VKAVFQCAVLALKFP--EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFAL 892 (963)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence 777887777777532 222234577778877766542 1 34667778888888876532222222222222233
Q ss_pred hccChHHHHHHHHh
Q 003214 796 LYYNSSLTLSILHK 809 (838)
Q Consensus 796 ~~~~~~~~~~~L~~ 809 (838)
+..+|..+.+++.+
T Consensus 893 ~~~~~~~~~~~l~~ 906 (963)
T 2x19_B 893 NKHCFSLLSMWIKE 906 (963)
T ss_dssp HHHSHHHHHHHHHH
T ss_pred HHHChHHHHHHHHH
Confidence 33467777766654
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.05 E-value=8.6e-06 Score=99.27 Aligned_cols=312 Identities=11% Similarity=0.121 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHHhhc-----c-c------chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC
Q 003214 384 YSPRTASMDFVSELVRKR-----G-K------ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE 451 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~-----~-~------~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~ 451 (838)
|..|.+|..++..++... + . ++.+.+.+.+...++. +. ......|.+++.++|.+++.+.+
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~----~~-~~~p~vr~~a~~~lg~~~~~~~~-- 491 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS----NN-IPHIILRVDAIKYIYTFRNQLTK-- 491 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC----SS-CSCHHHHHHHHHHHHHTGGGSCH--
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC----CC-CCCceehHHHHHHHHHHHhhCCH--
Confidence 567888888888887542 1 1 2223333444444442 11 12678899999999999886522
Q ss_pred cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc---------cCCh---hHHHHHHHHHHhcCCCCC-----C
Q 003214 452 PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---------FSDQ---NNFRKALHSVVSGLRDPE-----L 514 (838)
Q Consensus 452 ~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---------~~~~---~~~~~~~~~l~~~l~~~~-----~ 514 (838)
..+.+++. .++..+.++++.+|.+||+++.+|.+.. +... .++..+++.++..++... .
T Consensus 492 ---~~l~~~l~-~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 492 ---AQLIELMP-ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp ---HHHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ---HHHHHHHH-HHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 23444442 3444556778999999999999987631 1111 457888888888876531 1
Q ss_pred chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh-ch--h-----hHHHHHHHHHHhhcc-cchhhHHHHHHH
Q 003214 515 PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV-EN--E-----DLVFTLETIVDKFGE-EMAPYALGLCQN 585 (838)
Q Consensus 515 ~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~--~-----~l~~~l~~iv~~~~~-~i~p~~~~l~~~ 585 (838)
.....+..|+..+++.. .+.+.||.+.+++.|...++.. ++ + .+.++++.++...+. .+.++...+++
T Consensus 568 ~~~e~l~~al~~vv~~~--~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p- 644 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTS--EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMP- 644 (960)
T ss_dssp TSCHHHHHHHHHHHHHH--TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-
Confidence 14468889999998886 5889999999999999988764 11 1 256667777766332 34444444444
Q ss_pred HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHH--HHhccChhhHHHHHHHHHH
Q 003214 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMR--RMLTTDGQEVFEEVLEIVS 663 (838)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~--~~l~~~~~~~~~~~l~ll~ 663 (838)
.+.++.++...+ +.-.+++.+..++...+.-++ ....++|.+. .+++.. .++.....++.
T Consensus 645 ---~~~~iL~~~~~~---------~~~~~~~i~~~l~~~~~~~~~----~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~ 706 (960)
T 1wa5_C 645 ---TFLTVFSEDIQE---------FIPYVFQIIAFVVEQSATIPE----SIKPLAQPLLAPNVWELK--GNIPAVTRLLK 706 (960)
T ss_dssp ---HHHHHHHTTCTT---------THHHHHHHHHHHHHHCSSCCT----TTGGGHHHHTSGGGGCCT--TTHHHHHHHHH
T ss_pred ---HHHHHHHhhhHh---------hHHHHHHHHHHHHHhccCCCH----HHHHHHHHHcCHHHhcCC--CCchhHHHHHH
Confidence 334455432211 233567777777776532222 2244566665 555443 37777777777
Q ss_pred HhhhcC-CCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCccc-ccccCCchHHHHHHHHHHHHhcC
Q 003214 664 YMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH-FLTCKEPDYQQSLWSMVSSIMAD 735 (838)
Q Consensus 664 ~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~-~l~~~~~~~~~~l~~~~~~~l~~ 735 (838)
.++... +.+.+ +-.++..+.+++.+...+ +..+.++..++..-+.. +. +|+..++..+...+..
T Consensus 707 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~-----~yl~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 707 SFIKTDSSIFPD-LVPVLGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLR-----PYIKQIAVLLLQRLQN 772 (960)
T ss_dssp HHHHHHGGGCSC-SHHHHHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHG-----GGHHHHHHHHHHGGGS
T ss_pred HHHHhChHHHHH-HHHHHHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHHHHhh
Confidence 776432 22221 112333233333221111 45666676666655555 44 6888888877777654
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.05 E-value=1.9e-07 Score=103.88 Aligned_cols=318 Identities=11% Similarity=0.113 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHhhc-ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc
Q 003214 388 TASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (838)
Q Consensus 388 ~~a~~ll~~l~~~~-~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~ 466 (838)
..+..++..++... +....+.+++.+.+.+++. . .++..+++++.+++.+++..... .....+..++ +.+.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~----~--~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~~ll-~~l~ 178 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP----N--STEHMKESTLEAIGYICQDIDPE-QLQDKSNEIL-TAII 178 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT----T--CCHHHHHHHHHHHHHHHHHSCGG-GTGGGHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccC----C--CCHHHHHHHHHHHHHHHHhCCch-hhHhHHHHHH-HHHH
Confidence 45667777777763 2223344555555565431 0 16899999999999999865211 0112233332 3344
Q ss_pred ccccCC--CcchhhHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 467 PEFSSP--VGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 467 p~l~~~--~~~lr~ra~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
..+.++ ++-+|..|+++++.+..+. +........+++.+...+.+++..||..|+.+|..++... .+.+.|++
T Consensus 179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~ 256 (462)
T 1ibr_B 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY--YQYMETYM 256 (462)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC--GGGCTTTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 455665 6889999999999875431 1111112335667777778888889999999999999985 57788899
Q ss_pred H-HHHHHHHHHhhhhchhh---HHHHHHHHHHhh---------------------cccchhhHHHHHHHHHHHHHHHHhc
Q 003214 542 P-QLLDEFFKLMNEVENED---LVFTLETIVDKF---------------------GEEMAPYALGLCQNLAAAFWRCMNT 596 (838)
Q Consensus 542 ~-~il~~L~~ll~~~~~~~---l~~~l~~iv~~~---------------------~~~i~p~~~~l~~~L~~~~~~~~~~ 596 (838)
+ .+++.++..+++.+.+. ...++..++..- ...+.|+...+++.+. +.+..
T Consensus 257 ~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~----~~l~~ 332 (462)
T 1ibr_B 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT----QTLTK 332 (462)
T ss_dssp TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH----HHTTC
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH----HHHHh
Confidence 8 89988888776544332 233344444321 0112234445554444 33432
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCC--CCCH
Q 003214 597 AEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISL 674 (838)
Q Consensus 597 ~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~--~~~~ 674 (838)
.+ ++++++....+.....++..+...+++ . +.+.++|.+...++...-...+.++..+..+..... .+.+
T Consensus 333 ~d--~d~~~~~~~~r~~a~~~L~~l~~~~~~--~----~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 333 QD--ENDDDDDWNPCKAAGVCLMLLATCCED--D----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp CC--SSCCTTCCSHHHHHHHHHHHHHHHTTT--T----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred cc--cccccccchHHHHHHHHHHHHHHhccH--H----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 21 111122223456778888888888763 2 336788888888877667788899999999987543 3556
Q ss_pred hhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHH
Q 003214 675 EMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVS 730 (838)
Q Consensus 675 ~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~ 730 (838)
.+.+++|.+.+.+.+............|..+....++.+.. ++++..++..+.
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~---~~~l~~ll~~Ll 457 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN---DVYLAPLLQCLI 457 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCS---TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccccc---HHHHHHHHHHHH
Confidence 67788888888886544445566677777776655544321 146666665443
No 23
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.79 E-value=1.2e-06 Score=107.10 Aligned_cols=307 Identities=10% Similarity=0.112 Sum_probs=189.0
Q ss_pred CCcchhhHHHHHHHhhhccccCC-hhHHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 003214 472 PVGHLRAKAAWVAGQYAHINFSD-QNNFRKALHSVVSGLR--DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (838)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~--~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (838)
++..-|-.|++++|.+++..... ...+..+++ ++..+. |+++.||..|+.++.++.+... +.. .|++++++.+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~--~~~-~~l~~vl~~l 551 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLM--ENP-AYIPPAINLL 551 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHh--cCH-HHHHHHHHHH
Confidence 45677889999999998743211 245677787 444454 4578899999999999997753 111 6788888888
Q ss_pred HHHhhhhch-hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC
Q 003214 549 FKLMNEVEN-EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 627 (838)
Q Consensus 549 ~~ll~~~~~-~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~ 627 (838)
+..++ ... .....++..+++.+++.+.||.+.+++.+.. +.++...+ ......++++++.++.+++.
T Consensus 552 ~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~----~l~~~~~~-------~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 552 VRGLN-SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA----SLNTGRMK-------NSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHSTTSC-------HHHHHHHHHHHHHHHHTSCT
T ss_pred HHHhC-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH----HHcCCCCC-------hHHHHHHHHHHHHHHHhCCH
Confidence 77773 222 2367888888988999999999999998886 33332111 22356789999999988751
Q ss_pred --ChHHHHHHHhhHHHHHHHHhccCh--h---hHHHHHHHHHHHhhhcCC--------------CCCHhhhHhHHHHHHH
Q 003214 628 --LPHLFVQIEPTLLPIMRRMLTTDG--Q---EVFEEVLEIVSYMTFFSP--------------TISLEMWSLWPLMMEA 686 (838)
Q Consensus 628 --~~~~~~~l~~~~~p~i~~~l~~~~--~---~~~~~~l~ll~~~~~~~~--------------~~~~~l~~l~~~l~~~ 686 (838)
..+.+..+.+.++..+..+.+... . .-.-+.++.++.+++..+ ++.|...+++|.+..+
T Consensus 620 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 699 (971)
T 2x1g_F 620 EEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRI 699 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHH
Confidence 122333333444444445544331 1 334456666666655311 2333455677766666
Q ss_pred Hhhh--HhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC--cc
Q 003214 687 LADW--AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--VD 762 (838)
Q Consensus 687 ~~~~--~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~--~~ 762 (838)
+... +.+....++.++...+..-++.+. +++..++..+...+... +. ..+..++..++..++.. ..
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~-----p~l~~~~~~l~~~~~~~--~~---~~~l~l~~~~i~~~~~~~~~~ 769 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITNLRSSFQ-----PMLQDLCLFIVASFQTR--CC---APTLEISKTAIVMFFKDEGCK 769 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC--C-----THHHHHHHHHHHHCC----CC---HHHHHHHHHHHTTCCC-----
T ss_pred HHhccccHHHHHHHHHHHHHHHHhhhhhcc-----ccHHHHHHHHHHHHhcC--Cc---hHHHHHHHHHHHHhCCCcchH
Confidence 6432 345677777777665443334443 68888887766665432 21 35889999999988763 33
Q ss_pred cchHHH----HHHHHHHHhh------hhhhHHHHHHHHHHHHhhccChHHHH
Q 003214 763 HWVEPY----LRITVERLRR------AEKSYLKCLLVQVIADALYYNSSLTL 804 (838)
Q Consensus 763 ~~l~~i----l~~~l~~l~~------~~~~~~~~~~l~v~~~~~~~~~~~~~ 804 (838)
+.+..+ ...++..+.. ...+.++..++.++.+++-++|..++
T Consensus 770 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~ 821 (971)
T 2x1g_F 770 PLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLE 821 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHc
Confidence 444444 4444444432 24677888999998888888776554
No 24
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.68 E-value=0.00018 Score=88.49 Aligned_cols=384 Identities=10% Similarity=0.055 Sum_probs=202.1
Q ss_pred CCHHHHHHHHHHHHHhhcccc----hHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHH
Q 003214 384 YSPRTASMDFVSELVRKRGKE----NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 459 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~----~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~ 459 (838)
|..|.+|.-.+..+++..++. .++.+++++..... ... + +.+....+..+++++|..+..+.... ..+..
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~-~~~-~-~~~~~~v~~~~~~~lgry~~~~~~~~---~~l~~ 540 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV-KKR-G-KDNKAVVASDIMYVVGQYPRFLKAHW---NFLRT 540 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT-SSC-S-HHHHHHHHHHHHHHHHHCHHHHHHCH---HHHHH
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh-hhc-c-ccchHHHHHHHHHHHHHHHHHHHhHH---HHHHH
Confidence 567888888888877654332 24444544433211 100 0 01234555568889998887765532 23444
Q ss_pred HHhhcccccccCCCcchhhHHHHHHHhhhccccCCh----------hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 003214 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----------NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (838)
Q Consensus 460 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~----------~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~ 529 (838)
.+. .++..+.++++.++.+||+.+.++++-. +.. ..+..+++.+...+.+.+..-......|+..++.
T Consensus 541 vl~-~ll~~l~~~~~~V~~~A~~al~~l~~~~-~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 541 VIL-KLFEFMHETHEGVQDMACDTFIKIVQKC-KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHH-HHHHHTTSSCHHHHHHHHHHHHHHHHHH-THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 443 3444567788999999999999997521 110 2356666666666655333334566788888876
Q ss_pred hcccccccccchHHHHHH----HHHHhhhh--------chh---h---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 003214 530 ACRDLNEIRPILPQLLDE----FFKLMNEV--------ENE---D---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFW 591 (838)
Q Consensus 530 ~~~~~~~l~p~l~~il~~----L~~ll~~~--------~~~---~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~ 591 (838)
.....+...+++..+++. +-.+++.. +.+ . ++.++..++..+++.+.|++..+...+...|.
T Consensus 619 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~ 698 (1049)
T 3m1i_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1049)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 643224455555554444 44444321 111 1 34456667788899999998887776654433
Q ss_pred HHH---hcc---cCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH-HhhHHHHHHHHhc---cC-hhhHHHHHHH
Q 003214 592 RCM---NTA---EADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLT---TD-GQEVFEEVLE 660 (838)
Q Consensus 592 ~~~---~~~---~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l-~~~~~p~i~~~l~---~~-~~~~~~~~l~ 660 (838)
..+ +.. .+.............++...+..+++.......+.+.. .+.+-|++..++. .. ...-..++++
T Consensus 699 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~ 778 (1049)
T 3m1i_C 699 AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLN 778 (1049)
T ss_dssp HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHH
T ss_pred HHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHH
Confidence 322 111 00000000000111123333333343332111111111 1111222222221 11 1101156888
Q ss_pred HHHHhhhcC-CCCCHhhhHhHHHHHHH----Hh---hhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHH
Q 003214 661 IVSYMTFFS-PTISLEMWSLWPLMMEA----LA---DWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSI 732 (838)
Q Consensus 661 ll~~~~~~~-~~~~~~l~~l~~~l~~~----~~---~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~ 732 (838)
+++.++... +.+.|.+.++++.+... +. +...|...+.+.++..++.+.+..++. ..+.....++..+...
T Consensus 779 l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~-~~~~~~~~v~~~~~~a 857 (1049)
T 3m1i_C 779 CMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE-LPPAAFKLFVDAICWA 857 (1049)
T ss_dssp HHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHc-CCHHHHHHHHHHHHHH
Confidence 888877643 34556666666655554 32 124567788888888888888887763 1223356666666666
Q ss_pred hcCCCCCCCccCchhHHHHHHHHHccc--C-------cccchHHHHHHHHHHHhh
Q 003214 733 MADKNLEDGDIEPAPKLIEVVFQNCKG--Q-------VDHWVEPYLRITVERLRR 778 (838)
Q Consensus 733 l~~~~~~~~~~~~~~~ll~~i~~~~~~--~-------~~~~l~~il~~~l~~l~~ 778 (838)
+..+ +......+++++..++.+... . +..+...+++.++..+.+
T Consensus 858 l~~~--~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~ 910 (1049)
T 3m1i_C 858 FKHN--NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTD 910 (1049)
T ss_dssp HTCC--SHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hCCC--CchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6533 222235677888888877542 1 123445566666666655
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.60 E-value=2.4e-05 Score=89.64 Aligned_cols=126 Identities=13% Similarity=0.226 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcc
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v 465 (838)
.|..+...+..++.+++. ....++..+.+.+... .++...++ +.+++.+.....+.... -+.. +...
T Consensus 369 ~r~~~v~aI~~la~~~~~-~~~~~v~~Ll~ll~~~-------~~~v~~e~-i~~l~~ii~~~p~~~~~--~v~~-L~~~- 435 (591)
T 2vgl_B 369 FVRKAVRAIGRCAIKVEQ-SAERCVSTLLDLIQTK-------VNYVVQEA-IVVIRDIFRKYPNKYES--IIAT-LCEN- 435 (591)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHTC-------CHHHHHHH-HHHHHHHHHHSCSSCCT--THHH-HHHT-
T ss_pred HHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHccc-------chHHHHHH-HHHHHHHHHHCcchHHH--HHHH-HHHH-
Confidence 677788888888888753 3455666666666531 35666666 44666655443322111 1222 2222
Q ss_pred ccccc-CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 466 FPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 466 ~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+. ...|-+|..++|++|+|++.. .+ ...++..+++.+.+.+..||.++..|+..+....
T Consensus 436 ---l~~~~~~~~~~~~~wilGey~~~~-~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 436 ---LDSLDEPDARAAMIWIVGEYAERI-DN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp ---TTTCCSHHHHHHHHHHHHTTCTTC-TT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred ---HHhccCHHHHHHHHHHHHcccccc-cC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 22 346778999999999998754 22 3567777888887777889999999999998764
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3e-07 Score=92.25 Aligned_cols=185 Identities=8% Similarity=-0.002 Sum_probs=135.1
Q ss_pred cchhhHhHHHHHHHH-HHHHhhcCCcchHHHHHHHhhcccccc-cCCCcchhhHHHHHHHhhhcccc--CCh-hHHHHHH
Q 003214 428 KPYRQKDGALLAIGA-LCDKLKQTEPYKSELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAHINF--SDQ-NNFRKAL 502 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~-i~~~l~~~~~~~~~~~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~~~~--~~~-~~~~~~~ 502 (838)
.+|+.|.+++..++. +.+++.+..+-..++..++ ..+.+.+ +++++.+|..||.++|++++..- .-. .+...++
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~-~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLL-GIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHH-HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHH-HHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 599999999999999 8765433210011222332 2344456 57899999999999999986331 112 4678899
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch---hhHHHHHHHHHHhhc---ccch
Q 003214 503 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFG---EEMA 576 (838)
Q Consensus 503 ~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~---~~l~~~l~~iv~~~~---~~i~ 576 (838)
+.++..+.|....|+.+|..|+..++...+ +....+|++.+++.|+..++..+. +..+.+|..++...+ +.+.
T Consensus 107 p~ll~~l~dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 107 TPLLDRTKEKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999888899999999999999864 333335599999999999976433 236677777787776 3477
Q ss_pred hhH-HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC
Q 003214 577 PYA-LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 627 (838)
Q Consensus 577 p~~-~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~ 627 (838)
||. +.+++.|... +. |. ...++....++++.+...+|+
T Consensus 186 ~~l~~~iip~l~~~----l~----D~-----~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 186 RYLKDEVVPIVIQI----VN----DT-----QPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHTTTHHHHHHHH----HT----CS-----SHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHH----hc----CC-----CHHHHHHHHHHHHHHHHHhCH
Confidence 888 8888888763 31 11 245678899999999999986
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.34 E-value=3.1e-05 Score=85.55 Aligned_cols=348 Identities=12% Similarity=0.118 Sum_probs=187.4
Q ss_pred HHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Q 003214 38 LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKD-MVRDHILVFVAQV-PPLLRVQLGECLKTI 115 (838)
Q Consensus 38 ~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~-~ir~~ll~~l~~~-~~~i~~~~~~~i~~I 115 (838)
+..|++.+.+ .+..+|..|+..|++.+.+.+.. .+..-.+. .+...|++.+.++ +..+|...+.+++.+
T Consensus 22 l~~l~~~l~s--~~~~~r~~A~~~L~~l~~~~~~~-------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 22 TSDMIEMIFS--KSPEQQLSATQKFRKLLSKEPNP-------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp CHHHHHHHHS--SCHHHHHHHHHHHHHHHHSSSSC-------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC-------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 5566776644 37789999999999998766553 12111122 3556667777776 789999999999999
Q ss_pred HHhhCC--CC--ChhHHHHHHHHhhhh--h-HHHHHHHHHHHHHHcccCCccCcchHHHHH-HHHhHHHHHHHHHHhccc
Q 003214 116 IHADYP--EQ--WPHLLDWVKHNLQDQ--Q-VYGALFVLRILSRKYEFKSDEERTPVYRIV-EETFHHLLNIFNRLVQIV 187 (838)
Q Consensus 116 a~~d~p--~~--Wp~ll~~l~~~l~s~--~-~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~ 187 (838)
+..+-. .. ..+.++.+++.++++ . ...++.+|..+.... ++.+. .++ ...+|.+..++. +.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~----~~~~~---~~~~~~~i~~L~~~l~----~~ 161 (450)
T 2jdq_A 93 ASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS----TMCRD---YVLDCNILPPLLQLFS----KQ 161 (450)
T ss_dssp HSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----HHHHH---HHHHTTCHHHHHHHTT----SC
T ss_pred hcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC----HHHHH---HHHHCCCHHHHHHHhc----CC
Confidence 973211 11 357999999999887 3 467788888887532 11111 111 123455444332 11
Q ss_pred CCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHH
Q 003214 188 NPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNR 267 (838)
Q Consensus 188 ~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~ 267 (838)
....++..++.++..+....-|.. ........++.+...+.. .|+ .++..++..+..
T Consensus 162 ----~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~l~~--------~~~---------~v~~~a~~~L~~ 218 (450)
T 2jdq_A 162 ----NRLTMTRNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLLFV--------SDT---------DVLADACWALSY 218 (450)
T ss_dssp ----CCHHHHHHHHHHHHHHHCCSSSCC--CGGGTGGGHHHHHHHTTC--------CCH---------HHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHcc--------CCH---------HHHHHHHHHHHH
Confidence 124567777777776653221211 011222333444444431 111 122323333322
Q ss_pred HHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCcchhhhhch-hhHHHH
Q 003214 268 LYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ-PRLDVL 346 (838)
Q Consensus 268 l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~-~~l~~l 346 (838)
+... .+.... .... ..++.+
T Consensus 219 l~~~-------------------------------------------~~~~~~----------------~~~~~~~i~~L 239 (450)
T 2jdq_A 219 LSDG-------------------------------------------PNDKIQ----------------AVIDAGVCRRL 239 (450)
T ss_dssp HTSS-------------------------------------------SHHHHH----------------HHHHTTTHHHH
T ss_pred HHCC-------------------------------------------CcHHHH----------------HHHHcCcHHHH
Confidence 2110 000000 0000 011111
Q ss_pred HHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHhhcccc---hH-HHHHHHHHHHhccccC
Q 003214 347 LFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE---NL-QKFIQFIVGIFKRYDE 422 (838)
Q Consensus 347 i~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~---~~-~~il~~~~~~l~~~~~ 422 (838)
+. .+. . .| ...|..|...+..++...+.. ++ ..+++.+.+.+..
T Consensus 240 ~~-----ll~--~-------~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--- 287 (450)
T 2jdq_A 240 VE-----LLM--H-------ND---------------YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--- 287 (450)
T ss_dssp HH-----HTT--C-------SC---------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---
T ss_pred HH-----HHC--C-------Cc---------------hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---
Confidence 11 110 0 00 123444555555554432110 00 0123334445542
Q ss_pred CCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHh----hcccccccCCCcchhhHHHHHHHhhhccccCChhHH
Q 003214 423 TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV----QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF 498 (838)
Q Consensus 423 ~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~----~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~ 498 (838)
.++..+..++.++|.++.+..+ ....++. ..++..+.++++.+|..|+|+++.++... +++..
T Consensus 288 -----~~~~vr~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~ 354 (450)
T 2jdq_A 288 -----PKESIKKEACWTISNITAGNRA------QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGG--SAEQI 354 (450)
T ss_dssp -----SSHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC--CHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC--CHHHH
Confidence 3689999999999999853221 1111111 12233445678899999999999997531 22221
Q ss_pred -----HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 499 -----RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 499 -----~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
..+++.++..+++++..|+..|+.||.+++....
T Consensus 355 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 355 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 3478889999998888899999999999998653
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.31 E-value=1.9e-05 Score=89.38 Aligned_cols=375 Identities=11% Similarity=0.103 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHhhcccchHH-----HHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHH--
Q 003214 386 PRTASMDFVSELVRKRGKENLQ-----KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE-- 458 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~-----~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~-- 458 (838)
.|..|...+..++...+..... .+++.+.+.+... +++..++.++.+++.++..-.+. ...+.
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~~~~~~---~~~~~~~ 159 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-------DFPQLQFEAAWALTNIASGTSEN---TKVVIDH 159 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHTSCHHH---HHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-------CCHHHHHHHHHHHHHHhCCCHHH---HHHHHhC
Confidence 5666666676665533211111 1223333444431 24889999999999998742211 00000
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChh---HH--HHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN---NF--RKALHSVVSGL-RDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~---~~--~~~~~~l~~~l-~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
..+ ..++..+.++++-+|..|+|+++.++.. ++. .. ..+++.++..| .+++..++..|+.+|.+++....
T Consensus 160 g~i-~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 160 GAV-PIFVKLLGSSSDDVREQAVWALGNVAGD---SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp THH-HHHHHHTTCSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred CcH-HHHHHHhcCCCHHHHHHHHHHHHHHhCC---ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 011 1233345678889999999999999752 222 11 23678889999 56778899999999999998742
Q ss_pred cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhcccCCCCCCChhHHHH
Q 003214 533 DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAA 611 (838)
Q Consensus 533 ~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (838)
..-......++..|..++...+.+....++..+..-... -......++. ..++.+.+++... + ...+
T Consensus 236 --~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~--~-------~~v~ 303 (528)
T 4b8j_A 236 --QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHP--S-------PSVL 303 (528)
T ss_dssp --CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCS--C-------HHHH
T ss_pred --CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCC--C-------hhHH
Confidence 222234566777777888765444444444444332211 1111111111 1222222344321 1 2234
Q ss_pred HHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHhccC-hhhHHHHHHHHHHHhhhcCCCCCHhhh--HhHHHHHHHH
Q 003214 612 VGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEAL 687 (838)
Q Consensus 612 ~~~l~~i~~i~~~~~~~~~~~~-~l~~~~~p~i~~~l~~~-~~~~~~~~l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~ 687 (838)
..++.+++.+... ++.... -+...++|.+...+... ......+++..+.++....+..-..+. .++|.+++++
T Consensus 304 ~~a~~~L~nl~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 304 IPALRTVGNIVTG---DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHTTS---CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Confidence 4566666666542 222222 23456788888888877 778889999999998853211111122 5678888888
Q ss_pred hhhHhhhhhhhhhhhhhhhccCcccccccCCchHH--HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc------
Q 003214 688 ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ--QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG------ 759 (838)
Q Consensus 688 ~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~--~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~------ 759 (838)
.+.+.+........|.++...+..... .++ ..++..+..++..+ +..-...++..+..++...+.
T Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~~~~~~-----~~l~~~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 381 QTAEFDIKKEAAWAISNATSGGSHDQI-----KYLVSEGCIKPLCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCHHHH-----HHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHH-----HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 665556777788888888776433222 111 12334444555432 212234456666666654332
Q ss_pred -CcccchHHHHH----HHHHHHhhhhhhHHHHHHHHHHHHhh
Q 003214 760 -QVDHWVEPYLR----ITVERLRRAEKSYLKCLLVQVIADAL 796 (838)
Q Consensus 760 -~~~~~l~~il~----~~l~~l~~~~~~~~~~~~l~v~~~~~ 796 (838)
...++...+.+ ..+..+....++.+......++-+.+
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12223333221 12333444455555555555555544
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.28 E-value=7.8e-06 Score=81.96 Aligned_cols=185 Identities=11% Similarity=0.173 Sum_probs=137.5
Q ss_pred cCCHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHH
Q 003214 383 LYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 459 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~---~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~ 459 (838)
.|..|.+|...|..+++..++ ..+..++..+...+.. ..+...+.+++.++|.++..+... +...++.
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~k-------d~~~~V~~~a~~~l~~la~~l~~~--~~~~~~~ 98 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK-------DSNVVLVAMAGKCLALLAKGLAKR--FSNYASA 98 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHHHGGG--GHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHhhh--HHHHHHH
Confidence 477899999999998876322 2235666666666641 137889999999999999887652 3334444
Q ss_pred HHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc
Q 003214 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (838)
Q Consensus 460 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (838)
++ ..++..+.++.+.+|..|+-++..+.... + +..+++.+...+++.++.||..++..|..++........+.+
T Consensus 99 il-p~ll~~l~d~~~~vr~~a~~aL~~~~~~~--~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 99 CV-PSLLEKFKEKKPNVVTALREAIDAIYAST--S---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HH-HHHHHGGGCCCHHHHHHHHHHHHHHHTTS--C---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HH-HHHHHHHcCCCHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 44 34666677888999999999999887632 2 567889999999998889999999999998877532335788
Q ss_pred chHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhccc-chhhHHHH
Q 003214 540 ILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEE-MAPYALGL 582 (838)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~-i~p~~~~l 582 (838)
+++.++..+..++++...+ ....++..++..++++ +.||...+
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999999765443 3667788888777765 66665544
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.22 E-value=6.6e-05 Score=82.91 Aligned_cols=339 Identities=11% Similarity=0.065 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHHHHhhc-cc---chHH--HHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC-cc-hHH
Q 003214 385 SPRTASMDFVSELVRKR-GK---ENLQ--KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PY-KSE 456 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~-~~---~~~~--~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~-~~-~~~ 456 (838)
..|..|...+..+.... .. ..+. .+++.+.+.+.. ..++..+..+..+++.++..-.+.. .+ ...
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 107 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR-------KENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC-------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Confidence 36777888887775422 11 1111 233434445543 1267888888999998875311100 00 001
Q ss_pred HHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH-----HHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHh
Q 003214 457 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHSVVSGLRD-PELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 457 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~-----~~~~~~l~~~l~~-~~~~V~~~A~~al~~~~~~ 530 (838)
.-+ .+...+.++++-+|..|+|+++.++.. +++.. ..+++.++..+.+ ++..||..|+.+|.+++..
T Consensus 108 ~i~----~L~~lL~~~~~~vr~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 108 AVP----IFIELLSSEFEDVQEQAVWALGNIAGD---STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHH----HHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHH----HHHHHHcCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 112 233345678899999999999999763 22111 2467888888985 6788999999999999976
Q ss_pred cccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHHhcccCCCCCCChhHH
Q 003214 531 CRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGAL 609 (838)
Q Consensus 531 ~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (838)
.. +..-...+..++..|+.++...+.+....++..+..-... ..+....+. ..+++.+.+++.. .+ ..
T Consensus 181 ~~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~--~~-------~~ 249 (450)
T 2jdq_A 181 KS-PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMH--ND-------YK 249 (450)
T ss_dssp SS-SCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTTHHHHHHHTTC--SC-------HH
T ss_pred CC-CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-CcHHHHHHHHcCcHHHHHHHHCC--Cc-------hh
Confidence 41 1111223355666677777654433233333333222211 111111111 1122222334431 11 22
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhh--hHhHHHHHHH
Q 003214 610 AAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM--WSLWPLMMEA 686 (838)
Q Consensus 610 ~~~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l--~~l~~~l~~~ 686 (838)
.+...+.++..+... .+..... +...++|.+...+..+.......++..+.++....+.....+ ..++|.+.++
T Consensus 250 v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 250 VVSPALRAVGNIVTG---DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp HHHHHHHHHHHHTTS---CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC---ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 344556666665432 2222222 234688888888887777888999999998875332111112 2567788888
Q ss_pred HhhhHhhhhhhhhhhhhhhhccCcccccccCCchHH-HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHc
Q 003214 687 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ-QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 757 (838)
Q Consensus 687 ~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~ 757 (838)
+.+...+........|.++...+.+...+ ... ..++..+.+++.++ +..-...++..+..++...
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~----~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGGSAEQIK----YLVELGCIKPLCDLLTVM--DSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHH----HHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhc
Confidence 76544556667777777776653222111 111 12334444555432 1122345566666666544
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.19 E-value=2.1e-05 Score=89.01 Aligned_cols=339 Identities=13% Similarity=0.134 Sum_probs=182.5
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHh----hcccccccCCCcchhhHHHHHHHhhhccccCChh--HHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLV----QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN--NFRKAL 502 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~----~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~--~~~~~~ 502 (838)
++..++.+..+++.++..-.+. . ..+.. ..++..+.++++-+|..|+|+++.++........ .-..++
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~---~---~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 217 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQ---T---KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH---H---HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhCCCHHH---H---HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcH
Confidence 6888999999999888632110 0 01110 1122233467889999999999999753100001 123467
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhH---HHHHHHHHHhhcccchhhH
Q 003214 503 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEEMAPYA 579 (838)
Q Consensus 503 ~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l---~~~l~~iv~~~~~~i~p~~ 579 (838)
+.++..+.+++..|+..|+.+|.+++.... +..-......++..|+.++...+.+.. ..+|..+.....+.+....
T Consensus 218 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKK-PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHHGGGSCCHHHHHHHHHHHHHHHCCSS-SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhCCCC-CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888889988888899999999999997642 111123445667777777775443333 3334433321111111111
Q ss_pred H-HHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHH
Q 003214 580 L-GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEE 657 (838)
Q Consensus 580 ~-~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~ 657 (838)
. .+++.|+ .++.. .+ ...+..++.++..+... ++..... +...++|.+...+..........
T Consensus 297 ~~~~v~~Lv----~lL~~--~~-------~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~ 360 (530)
T 1wa5_B 297 DVRIPKRLV----ELLSH--ES-------TLVQTPALRAVGNIVTG---NDLQTQVVINAGVLPALRLLLSSPKENIKKE 360 (530)
T ss_dssp HTTCHHHHH----HGGGC--SC-------HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred hcCcHHHHH----HHHCC--CC-------hhhHHHHHHHHHHHHcC---CHHHHHHHHHcchHHHHHHHHcCCCHHHHHH
Confidence 0 1222333 33332 11 22344556666665432 2222221 33578888888888877788899
Q ss_pred HHHHHHHhhhcCCCCCHhh--hHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcc--cccccCCchHH-HHHHHHHHHH
Q 003214 658 VLEIVSYMTFFSPTISLEM--WSLWPLMMEALADWAIDFFPNILVPLDNYISRGTA--HFLTCKEPDYQ-QSLWSMVSSI 732 (838)
Q Consensus 658 ~l~ll~~~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~--~~l~~~~~~~~-~~l~~~~~~~ 732 (838)
++..+..+....+..-..+ ..++|.+++++.+...+........|.++...+.. .... ... ..++..+..+
T Consensus 361 A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~----~l~~~~~l~~L~~l 436 (530)
T 1wa5_B 361 ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR----YLVSQGCIKPLCDL 436 (530)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHH----HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHH----HHHHCCCHHHHHHH
Confidence 9999998875432111112 24678888887654556667777888877766532 1110 000 0122333444
Q ss_pred hcCCCCCCCccCchhHHHHHHHHHccc-------CcccchHHHHHH----HHHHHhhhhhhHHHHHHHHHHHHhh
Q 003214 733 MADKNLEDGDIEPAPKLIEVVFQNCKG-------QVDHWVEPYLRI----TVERLRRAEKSYLKCLLVQVIADAL 796 (838)
Q Consensus 733 l~~~~~~~~~~~~~~~ll~~i~~~~~~-------~~~~~l~~il~~----~l~~l~~~~~~~~~~~~l~v~~~~~ 796 (838)
+.++ +..-...++..+..++...+. ...++...+.+. .+..|....++.++.....++.+++
T Consensus 437 l~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 437 LEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp TTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 4432 111234566667777765432 123343333222 2223334445555555555655554
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.17 E-value=0.00028 Score=80.98 Aligned_cols=112 Identities=21% Similarity=0.154 Sum_probs=77.6
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
.+...+-.|+.++|.++.. +.. +. +...+...+.+++|++|..|+++++++... +|+....+++.+..
T Consensus 119 ~n~~vr~lAL~~L~~i~~~-----~~~---~~-l~~~l~~~L~~~~~~VRk~A~~al~~l~~~---~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGSS-----EMC---RD-LAGEVEKLLKTSNSYLRKKAALCAVHVIRK---VPELMEMFLPATKN 186 (618)
T ss_dssp SSSHHHHHHHHHHHHHCCH-----HHH---HH-HHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---CGGGGGGGGGGTTT
T ss_pred CCHhHHHHHHHHHHhcCCH-----HHH---HH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHHH
Confidence 3668889999999988632 111 12 223344456788999999999999998763 34555677788888
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKL 551 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~l 551 (838)
.+.|.++.|+..|+.+|..++.... ....+.+.++.+++.|-.+
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~ 231 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL 231 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999876532 1124455555555544443
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.3e-05 Score=80.28 Aligned_cols=190 Identities=9% Similarity=0.154 Sum_probs=136.5
Q ss_pred cCCHHHHHHHHHHH-HHhhcc-----cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhh-cCCcch-
Q 003214 383 LYSPRTASMDFVSE-LVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK-QTEPYK- 454 (838)
Q Consensus 383 ~~s~r~~a~~ll~~-l~~~~~-----~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~-~~~~~~- 454 (838)
.|.-|.+|..-|.. +++..+ ..-+..++..+.+.+.. ..+...+.+++.++|.++.++. .. +.
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-------D~n~~v~~~A~~al~~la~~l~~~~--f~~ 99 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-------DANIQAVALAAQSVELICDKLKTPG--FSK 99 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHHHCTTT--SCH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHhccccc--ccH
Confidence 36678888877777 764321 11224556666666632 1477889999999999999886 43 32
Q ss_pred HHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC-Ch-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 455 SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS-DQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 455 ~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~-~~-~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
.....++ ..++..+.+..+.+|..+..++-.+.+..-. .. ..+..+++.++..|++.++.||..|+.+|..+++...
T Consensus 100 ~y~~~ll-p~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVF-TPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHH-HHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 2333333 3355556777788999988888888663200 11 1267899999999998888999999999999999864
Q ss_pred c-ccccccch-HHHHHHHHHHhhhhchhh---HHHHHHHHHHhhccc-chhhHHHH
Q 003214 533 D-LNEIRPIL-PQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE-MAPYALGL 582 (838)
Q Consensus 533 ~-~~~l~p~l-~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~-i~p~~~~l 582 (838)
. +..+.+++ +.++..+.+++++.+.+- ...++..+...+|++ +.||+..+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1 26788999 999999999998765442 567888888888875 88887665
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.13 E-value=0.00011 Score=84.02 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
+..|..+.-.+..+++..++ .. -.+.+.+.+-.++ ++...|..|+.++|.+.. .+. .+.+..
T Consensus 63 ~~~Krl~yl~l~~~~~~~~e-~~----~l~~n~l~kdL~~----~n~~ir~~AL~~L~~i~~-----~~~----~~~l~~ 124 (591)
T 2vgl_B 63 LELKKLVYLYLMNYAKSQPD-MA----IMAVNSFVKDCED----PNPLIRALAVRTMGCIRV-----DKI----TEYLCE 124 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSHH-HH----HTTHHHHGGGSSS----SSHHHHHHHHHHHHTCCS-----GGG----HHHHHH
T ss_pred HHHHHHHHHHHHHHcccCch-HH----HHHHHHHHHHcCC----CCHHHHHHHHHHHHcCCh-----HHH----HHHHHH
Confidence 34566666666666554322 21 1112233332222 477889999988887642 112 222233
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHH--HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR--KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
.+...+.+++|.+|..|+++++++... +++... .+++.+...|+|+++.|+..|+.+|..++.... .....+..
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~---~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~-~~~~~~l~ 200 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDI---NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP-NSNLLDLN 200 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC-SCCSCCCH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhh---ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC-Cccchhcc
Confidence 344566789999999999999998763 233333 688999999999999999999999999887642 12144566
Q ss_pred HHHHHHHHHHhhhhc
Q 003214 542 PQLLDEFFKLMNEVE 556 (838)
Q Consensus 542 ~~il~~L~~ll~~~~ 556 (838)
+..+..|++.+++.+
T Consensus 201 ~~~~~~Ll~~l~~~~ 215 (591)
T 2vgl_B 201 PQNINKLLTALNECT 215 (591)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 777777777776543
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.10 E-value=4.8e-05 Score=86.05 Aligned_cols=338 Identities=14% Similarity=0.097 Sum_probs=176.3
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccc----cccCCC-cchhhHHHHHHHhhhccccCChhH---H--
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP----EFSSPV-GHLRAKAAWVAGQYAHINFSDQNN---F-- 498 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p----~l~~~~-~~lr~ra~~~l~~~~~~~~~~~~~---~-- 498 (838)
++..+..|..+++.++..-.. +. ...+...-++| .+.+++ +-+|..|+|+++.++.. +++. .
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~--~~---~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~~~~~~~~~ 158 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERS--PP---IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG---TSENTKVVID 158 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSS--CC---HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCC--ch---HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CHHHHHHHHh
Confidence 677777888888776543211 11 11112112222 344554 89999999999999863 2222 1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhhcc
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGE 573 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~----l~~~l~~iv~~~~~ 573 (838)
..+++.++..|.+++..||..|+.+|.+++.... ..+.+.. ..++..|+.++....... ...+|..+......
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~--~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA--NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH--TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH--CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 2478889999999888999999999999987642 1112211 135666667774322222 33444444432211
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHhccChh
Q 003214 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQ 652 (838)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~-~l~~~~~p~i~~~l~~~~~ 652 (838)
........+++.|+ +++.. .| .-....++.++..+... .++... -+...++|.+...+.....
T Consensus 237 ~~~~~~~~~l~~L~----~lL~~--~~-------~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 237 PSFEQTRPALPALA----RLIHS--ND-------EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSP 300 (528)
T ss_dssp CCHHHHTTHHHHHH----HHTTC--CC-------HHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCH
T ss_pred CcHHHHHHHHHHHH----HHHCC--CC-------HHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCCh
Confidence 11112223333333 34432 11 12233445555555422 222221 2345678888888888778
Q ss_pred hHHHHHHHHHHHhhhcCCCCCHhh--hHhHHHHHHHHhhh-HhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHH
Q 003214 653 EVFEEVLEIVSYMTFFSPTISLEM--WSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMV 729 (838)
Q Consensus 653 ~~~~~~l~ll~~~~~~~~~~~~~l--~~l~~~l~~~~~~~-~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~ 729 (838)
.....++..+..+....+.....+ ..++|.+.+++.+. ...........|.++....++....-.+...+..+
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L---- 376 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL---- 376 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH----
Confidence 888999999999886432211122 24578888887654 45566677777777765333211100001223333
Q ss_pred HHHhcCCCCCCCccCchhHHHHHHHHHcccCcccch--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccC
Q 003214 730 SSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV--EPYLRITVERLRRAEKSYLKCLLVQVIADALYYN 799 (838)
Q Consensus 730 ~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l--~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~ 799 (838)
.+++.+. +..-...++..+..+..........++ ...+..++..+.. .++.++...+..+..++...
T Consensus 377 ~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 377 VNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHH
Confidence 3344322 222234567777777765222111111 1233444444433 33455555555555555433
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.07 E-value=2.8e-05 Score=77.85 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=125.2
Q ss_pred cchhhHhHHHHHHHHHHHHhhc--CCcchHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCC-hhHHHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSD-QNNFRKALH 503 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~--~~~~~~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~-~~~~~~~~~ 503 (838)
.+|+.|.+++.+++.+..+..+ ...+ ..+.+. +...+. ++++.+|..|+.++|.++...-.. ..+...+++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~----L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp 101 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSA----LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVP 101 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHH----HHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHH----HHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5899999999999999887433 1222 233333 344564 788999999999999997532111 246789999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhcc--cchhh
Q 003214 504 SVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGE--EMAPY 578 (838)
Q Consensus 504 ~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~--~i~p~ 578 (838)
.++..+.|++..||.+|+.|+..++... .++.+++.++..+++-+.. .....|..++..++. ...+|
T Consensus 102 ~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 102 SLLEKFKEKKPNVVTALREAIDAIYAST--------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 9999999999999999999999998864 2467777777877754332 356666776666653 35678
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC
Q 003214 579 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 627 (838)
Q Consensus 579 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~ 627 (838)
.+.+++.|... ++ |+ ..-.+....++++.+...+++
T Consensus 174 l~~l~p~l~~~----l~----D~-----~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 174 LKLLTTSLVKT----LN----EP-----DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHH----HT----SS-----CHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHH----hc----CC-----ChHHHHHHHHHHHHHHHHcCH
Confidence 88888888763 32 21 244677889999999999874
No 37
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.02 E-value=0.00014 Score=87.80 Aligned_cols=382 Identities=9% Similarity=0.031 Sum_probs=215.8
Q ss_pred cCCHHHHHHHHHHHHHhhccc----chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHH
Q 003214 383 LYSPRTASMDFVSELVRKRGK----ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 458 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~----~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~ 458 (838)
.|..|.||.-.+.++++.... ..++.++..+.++.... +........+.++++++|..++-+..... .++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~---~~~d~k~~v~~t~~~~lGry~~wl~~~~~---~L~ 539 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKK---RGKDNKAVVASDIMYVVGQYPRFLKAHWN---FLR 539 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHC---CSHHHHHHHHHHHHHHHHTCHHHHHHCHH---HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcc---ccCcchHHHHHHHHHHHHHHHHHHhccHH---HHH
Confidence 377888888888888776543 34455555555544321 11012456788899999999988865432 344
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhcc-c--cCC------hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI-N--FSD------QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~-~--~~~------~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~ 529 (838)
+.+ +.++..+.+++|.+...|||.+..+++- . +.. ...+..+++.+.....+-+..-+..+..|+..+++
T Consensus 540 ~vl-~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 540 TVI-LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 544 3355556677899999999999998651 1 100 12456666666665554444556788899999998
Q ss_pred hccc----ccccccchHHHHHHHHHHhhhh----------c-hhh---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 003214 530 ACRD----LNEIRPILPQLLDEFFKLMNEV----------E-NED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFW 591 (838)
Q Consensus 530 ~~~~----~~~l~p~l~~il~~L~~ll~~~----------~-~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~ 591 (838)
.... .+.+...++.+.+.+-.+.+.. + ... ++.++.++....+....|++..+...+.+.+.
T Consensus 619 ~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 7641 2233333444444444444321 0 112 45556667778888889999888887776443
Q ss_pred HHHh-------cccCCCCCCC--hhH--HHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccCh---hhH-HH
Q 003214 592 RCMN-------TAEADEDADD--PGA--LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG---QEV-FE 656 (838)
Q Consensus 592 ~~~~-------~~~~d~~~~~--~~~--~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~---~~~-~~ 656 (838)
...+ +.+... ... .+. ..+..++..+.+.+....+...+. ...+-|++..++.... .+. ..
T Consensus 699 ~~s~~i~~~~~~~g~~~-~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~---~~~~~~l~~~vl~dY~~~~~~~r~~ 774 (1023)
T 4hat_C 699 AVSSMISAQVAAEGLIA-TKTPKVRGLRTIKKEILKLVETYISKARNLDDVV---KVLVEPLLNAVLEDYMNNVPDARDA 774 (1023)
T ss_dssp HHHHHHHHHHHHHCGGG-GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHH---HHTHHHHHHHHHHHHHHSCGGGCCH
T ss_pred HHHHHHHHHHHhCCchh-hccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHhHHHHHHHHHHHHHhCChhhccH
Confidence 3211 111000 000 011 112233444444444332222222 2344555566654211 111 26
Q ss_pred HHHHHHHHhhhcC-CCCCHhhhHhHHHHHH----HHhh---hHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHH
Q 003214 657 EVLEIVSYMTFFS-PTISLEMWSLWPLMME----ALAD---WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSM 728 (838)
Q Consensus 657 ~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~----~~~~---~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~ 728 (838)
+.+.+.+.++... ..+.|.+..++..+++ .+++ +..|+..+++..+.++..+.+..+++ ..++....+++.
T Consensus 775 ~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~-~~~~~~~~~~~~ 853 (1023)
T 4hat_C 775 EVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE-LPPAAFKLFVDA 853 (1023)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHc-CCHHHHHHHHHH
Confidence 7888888887654 3455666655555544 4433 23556777889999999999888885 233455666665
Q ss_pred HHHHhcCCCCCCCccCchhHHHHHHHHHccc----Cc-----ccchHHHHHHHHHHHhh
Q 003214 729 VSSIMADKNLEDGDIEPAPKLIEVVFQNCKG----QV-----DHWVEPYLRITVERLRR 778 (838)
Q Consensus 729 ~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~----~~-----~~~l~~il~~~l~~l~~ 778 (838)
+.-.+.++..+. ...+.+++..++.++.. ++ ..|...+++.++..+.+
T Consensus 854 ~~~a~~h~~r~~--~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td 910 (1023)
T 4hat_C 854 ICWAFKHNNRDV--EVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTD 910 (1023)
T ss_dssp HHHHHTCCCHHH--HHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCchHH--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 554554332221 24567777777776553 11 24555566666666665
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.99 E-value=0.00019 Score=81.09 Aligned_cols=295 Identities=13% Similarity=0.130 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHhhcc--------cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHH
Q 003214 386 PRTASMDFVSELVRKRG--------KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~--------~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~ 457 (838)
.|..|...|..++.... ...++.++ +.+.+ .++..++.++.+++.++..-.+ ....+
T Consensus 147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv----~lL~~--------~~~~vr~~A~~aL~~l~~~~~~---~~~~~ 211 (530)
T 1wa5_B 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFI----QLLYT--------GSVEVKEQAIWALGNVAGDSTD---YRDYV 211 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH----HHHHH--------CCHHHHHHHHHHHHHHHTTCHH---HHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH----HHHcC--------CCHHHHHHHHHHHHHHhCCCcc---chHHH
Confidence 56666677776665321 12333333 34443 2678999999999999864211 00000
Q ss_pred H--HHHhhcccccccCCCcchhhHHHHHHHhhhccc-c-CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc
Q 003214 458 E--RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-F-SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD 533 (838)
Q Consensus 458 ~--~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~ 533 (838)
. ..+ ..++..+.++++-++..|+|+++.++... . ........+++.++..|.+++..|+..|+.+|.+++....
T Consensus 212 ~~~~~l-~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~- 289 (530)
T 1wa5_B 212 LQCNAM-EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ- 289 (530)
T ss_dssp HHTTCH-HHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-
T ss_pred HHcCcH-HHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-
Confidence 0 000 11222345567889999999999998532 1 1223456788999999998888899999999999987532
Q ss_pred ccccccchH-HHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHHhcccCCCCCCChhHHHH
Q 003214 534 LNEIRPILP-QLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAA 611 (838)
Q Consensus 534 ~~~l~p~l~-~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (838)
+.....+. .++..|+.++...+.+....++..+..-.... ......++ ..+++.+..++... + ...+
T Consensus 290 -~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~--~-------~~vr 358 (530)
T 1wa5_B 290 -EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN-DLQTQVVINAGVLPALRLLLSSP--K-------ENIK 358 (530)
T ss_dssp -HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCS--C-------HHHH
T ss_pred -HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC-HHHHHHHHHcchHHHHHHHHcCC--C-------HHHH
Confidence 22222222 45666777777544333333333332222110 00111111 12222333344321 1 2234
Q ss_pred HHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCC---CHhhh--HhHHHHHH
Q 003214 612 VGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI---SLEMW--SLWPLMME 685 (838)
Q Consensus 612 ~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~---~~~l~--~l~~~l~~ 685 (838)
...+.+++.+.. .+++.... +...++|.+...+.....+....++..+..+.....+. ...+. .+.|.+++
T Consensus 359 ~~A~~aL~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ 435 (530)
T 1wa5_B 359 KEACWTISNITA---GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 435 (530)
T ss_dssp HHHHHHHHHHTT---SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHH
Confidence 445555555543 22332222 23567788888887777788899999999888754321 12233 37788888
Q ss_pred HHhhhHhhhhhhhhhhhhhhhccCcc
Q 003214 686 ALADWAIDFFPNILVPLDNYISRGTA 711 (838)
Q Consensus 686 ~~~~~~~~~l~~~~~~L~~~i~~~~~ 711 (838)
++.+.+......++..|.+++..++.
T Consensus 436 ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 436 LLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 87654556667778888888776543
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.95 E-value=0.00021 Score=86.13 Aligned_cols=285 Identities=10% Similarity=0.046 Sum_probs=167.1
Q ss_pred cchhhHHHHHHHhhhccccC-----Ch--hHHHHHHHHHHhcCC-----CCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 474 GHLRAKAAWVAGQYAHINFS-----DQ--NNFRKALHSVVSGLR-----DPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~-----~~--~~~~~~~~~l~~~l~-----~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
..-+-.++.+++.+++..-. .+ ...+.+++.+...++ ++++.||.+++.++.++.+..... ..++
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~---~~~l 533 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE---SAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC---CTTH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC---chhH
Confidence 44577788888888874311 01 123345555554433 667889999999999998876421 1578
Q ss_pred HHHHHHHHH--Hhhhhch---hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCCh----------
Q 003214 542 PQLLDEFFK--LMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP---------- 606 (838)
Q Consensus 542 ~~il~~L~~--ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~---------- 606 (838)
+++++.++. .+...+. ....+++..+++.++..+.||+..+++.+.. +..... .+..+++
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~----lL~~~~-~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD----LLNISV-SPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG----GGCCCC-CCCCC--CSSCCHHHHH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH----hhcCcC-CCCCcccccccchhhhc
Confidence 888888777 6554322 2367889999999999999999999887765 222110 0111011
Q ss_pred ---hHHHHHHHHHHHHHHHHhhcCChH-HHHHHHhhHHHH---HHHHhccCh---hh--HHHHHHHHHHHhhhcCC----
Q 003214 607 ---GALAAVGCLRAISTILESVSRLPH-LFVQIEPTLLPI---MRRMLTTDG---QE--VFEEVLEIVSYMTFFSP---- 670 (838)
Q Consensus 607 ---~~~~~~~~l~~i~~i~~~~~~~~~-~~~~l~~~~~p~---i~~~l~~~~---~~--~~~~~l~ll~~~~~~~~---- 670 (838)
..-...+++++++.++.+.+..++ ....+...+-|+ ++.+++... .+ -....+..+..+.+.-+
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~ 688 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS 688 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC
Confidence 011345799999999999764332 222233333343 334443221 11 23344444556655321
Q ss_pred C---CCHhhhHhHHHHHHHHhhh--HhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCc
Q 003214 671 T---ISLEMWSLWPLMMEALADW--AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEP 745 (838)
Q Consensus 671 ~---~~~~l~~l~~~l~~~~~~~--~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 745 (838)
. +.+.+++.++.++.++..+ .......+...+...+..-+..++ +++..+.+.+.... +..+...
T Consensus 689 ~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~-----~~~e~~~ 758 (980)
T 3ibv_A 689 EEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSI-----DMNELVD 758 (980)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHC-----CTTTHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcC-----CHHHHHH
Confidence 1 2234567777776666532 233455555566555554444455 56676665544322 2223456
Q ss_pred hhHHHHHHHHHcccCcccchHHHHHHHHHHH
Q 003214 746 APKLIEVVFQNCKGQVDHWVEPYLRITVERL 776 (838)
Q Consensus 746 ~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l 776 (838)
...++..++..++.++.+.+..++..+++++
T Consensus 759 fL~l~~qli~~f~~~~~~~l~~ll~~l~~~i 789 (980)
T 3ibv_A 759 VLSFISQLIHIYKDNMMEITNRMLPTLLMRI 789 (980)
T ss_dssp HHHHHHHHHHHTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999886666666555555544
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.71 E-value=0.0014 Score=75.09 Aligned_cols=128 Identities=12% Similarity=0.034 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
..|..|...+..+. ..++.+.+.+.+.+.+.. .+...|-+|..+++.+...-.+ .++.++ +.
T Consensus 122 ~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~--------~~~~VRk~A~~al~~l~~~~p~------~v~~~~-~~ 183 (618)
T 1w63_A 122 FVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKT--------SNSYLRKKAALCAVHVIRKVPE------LMEMFL-PA 183 (618)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHS--------CCHHHHHHHHHHHHHHHHHCGG------GGGGGG-GG
T ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHChH------HHHHHH-HH
Confidence 36766766655553 456667777777777764 3678888999999988875332 123443 45
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC---------------CCCCchHHHHHHHHHHHHH
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR---------------DPELPVRVDSVFALRSFVE 529 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---------------~~~~~V~~~A~~al~~~~~ 529 (838)
+...+.++++.++..|++++++.+.........+..+++.+++.|. .+++-.+.....+|..+..
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 6777888899999999999999875321001123344444443332 1355577777778877765
Q ss_pred h
Q 003214 530 A 530 (838)
Q Consensus 530 ~ 530 (838)
.
T Consensus 264 ~ 264 (618)
T 1w63_A 264 N 264 (618)
T ss_dssp T
T ss_pred C
Confidence 4
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.64 E-value=0.15 Score=58.05 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=37.9
Q ss_pred hhhHHHHHHHhhhccccCChhH-HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 476 LRAKAAWVAGQYAHINFSDQNN-FRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 476 lr~ra~~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+-..|+|++|.|++..-..+.. ...++..+.+.+.+.+..||.++..|+-.+....
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 4456679999998743222111 2345666666666777889999999999987653
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.60 E-value=0.0075 Score=67.41 Aligned_cols=340 Identities=15% Similarity=0.143 Sum_probs=175.4
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCc-ch-HHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH-----HHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEP-YK-SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKA 501 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~-~~-~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~-----~~~ 501 (838)
+...+..|.++++.++.+-.+... .. ...-+ .++..|.++++-+|..|+|+++.++.- +++.. ...
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp----~Lv~lL~s~~~~v~e~A~~aL~nLa~d---~~~~r~~v~~~G~ 186 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIP----AFISLLASPHAHISEQAVWALGNIAGD---GSAFRDLVIKHGA 186 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH----HHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH----HHHHHHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHcCC
Confidence 556777788899998754221100 00 00111 223345788899999999999999742 23222 234
Q ss_pred HHHHHhcCCCCCC-----chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhccc--
Q 003214 502 LHSVVSGLRDPEL-----PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE-- 574 (838)
Q Consensus 502 ~~~l~~~l~~~~~-----~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~-- 574 (838)
++.++..+.+++. .+...|+.++.+++.... ...-......++..|..++...+.+....++..+..-....
T Consensus 187 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~ 265 (510)
T 3ul1_B 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN-PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265 (510)
T ss_dssp HHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS-SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred hHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc-chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh
Confidence 6677888875432 245578888888887653 11112244667778888887655544444444443322110
Q ss_pred chhhH--HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChh
Q 003214 575 MAPYA--LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (838)
Q Consensus 575 i~p~~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~ 652 (838)
..... ..++..|+ +++... + .......+.++..++.. .+.....-+...++|.+...+.....
T Consensus 266 ~~~~i~~~g~i~~Lv----~lL~~~--~-------~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~ 330 (510)
T 3ul1_B 266 RIEMVVKKGVVPQLV----KLLGAT--E-------LPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKT 330 (510)
T ss_dssp HHHHHHTTTCHHHHH----HHHTCS--C-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSH
T ss_pred hHHHHHhcccchhhh----hhhcCC--C-------hhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCH
Confidence 00000 01223333 234321 1 22344556666665432 11111122345567777777777777
Q ss_pred hHHHHHHHHHHHhhhcCCCCCHhhh--HhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCccccccc-CCchHHHHHHHHH
Q 003214 653 EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC-KEPDYQQSLWSMV 729 (838)
Q Consensus 653 ~~~~~~l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~-~~~~~~~~l~~~~ 729 (838)
+....+...+.++....+.....+. .++|.+.+++.+.+.+........|.++...+...-... .+...++ .+
T Consensus 331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~----~L 406 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE----PL 406 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH----HH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH----HH
Confidence 8888999888888754322111222 467888888766556666777778877776554321100 0001222 33
Q ss_pred HHHhcCCCCCCCccCchhHHHHHHHHHcccC-cccchHHHHH-----HHHHHHhhhhhhHHHHHHHHHHHHhhc
Q 003214 730 SSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLR-----ITVERLRRAEKSYLKCLLVQVIADALY 797 (838)
Q Consensus 730 ~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~-~~~~l~~il~-----~~l~~l~~~~~~~~~~~~l~v~~~~~~ 797 (838)
.++|..+ +..-...++..+..|++..+.. -..-+...+. ..+..|+..++..+......++=+.+-
T Consensus 407 ~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 407 MNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 3445432 1111233455555555543211 0111111111 134555666666776666666666553
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.58 E-value=0.071 Score=61.85 Aligned_cols=276 Identities=9% Similarity=-0.031 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHH
Q 003214 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 485 (838)
Q Consensus 406 ~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 485 (838)
+..+...+.+.+.+. . .+...++-+..+++.++..-..+..+..+ ..++. .++..+.++++-++..|.|+++
T Consensus 375 i~~Lv~~l~~lL~~~----~--~d~~v~~~AveaLayLS~~~~vk~~lv~d-~g~Ip-~LV~LL~s~d~~i~~~al~~L~ 446 (810)
T 3now_A 375 ALKLAEACRRFLIKP----G--KDKDIRRWAADGLAYLTLDAECKEKLIED-KASIH-ALMDLARGGNQSCLYGVVTTFV 446 (810)
T ss_dssp HHHHHHHHHHHHHCS----S--CCSSHHHHHHHHHHHHTTSHHHHHHHHHC-HHHHH-HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC----C--CCHHHHHHHHHHHHHHhCCcHHHHHHHHc-cchHH-HHHHHhCCCChHHHHHHHHHHH
Confidence 456666666676641 0 14567778888888776542211111100 12222 2333455678889999999999
Q ss_pred hhhccc--------------cCC-------h----hHH---------HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 486 QYAHIN--------------FSD-------Q----NNF---------RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 486 ~~~~~~--------------~~~-------~----~~~---------~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
..+... +.. + +.. ..+++.++.++.++++.+|..|++||.++..+.
T Consensus 447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~ 526 (810)
T 3now_A 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK 526 (810)
T ss_dssp HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH
T ss_pred HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 997521 000 0 111 146788888888888899999999999998653
Q ss_pred ccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhcccch-h--hHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 003214 532 RDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMA-P--YALGLCQNLAAAFWRCMNTAEADEDADD 605 (838)
Q Consensus 532 ~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~-p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~ 605 (838)
+....+.. ...+..|+.+++..+.. ....+|..+.....++.. + .....++.|+ +++.. +.
T Consensus 527 ~~r~~Vv~--~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv----~LL~~---~~---- 593 (810)
T 3now_A 527 ELRGKVVQ--EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL----NLLQQ---DC---- 593 (810)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH----HTTST---TS----
T ss_pred HHHHHHHH--CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH----HHhCC---CC----
Confidence 32222221 13455566666643332 245566666543332221 1 1122334444 34432 11
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHH-HHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhh--hHhHHH
Q 003214 606 PGALAAVGCLRAISTILESVSRLPHLF-VQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM--WSLWPL 682 (838)
Q Consensus 606 ~~~~~~~~~l~~i~~i~~~~~~~~~~~-~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l--~~l~~~ 682 (838)
........+.+++.+... +++.. .-++...+|.+...+..+.......+..+++++........... ...+|.
T Consensus 594 -~~l~~~eAl~AL~NLa~~---~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~ 669 (810)
T 3now_A 594 -TALENFESLMALTNLASM---NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669 (810)
T ss_dssp -CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHH
T ss_pred -cHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHH
Confidence 112122334455555432 22222 22345678888888888888889999999999985321111111 124455
Q ss_pred HHHHHhhhHhhhhhhhhhhhhhhh
Q 003214 683 MMEALADWAIDFFPNILVPLDNYI 706 (838)
Q Consensus 683 l~~~~~~~~~~~l~~~~~~L~~~i 706 (838)
++.++...+.+........|.+..
T Consensus 670 Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 670 LALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHh
Confidence 555554333334444444444433
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.55 E-value=0.006 Score=69.76 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=97.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++...|-.+|.+++..++.- .++.-+..+.+..++++++|.+|+-|+-++|.+. .++..+.+.+.+.+
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~-------~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-----~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSN-------SELIRLINNAIKNDLASRNPTFMGLALHCIANVG-----SREMAEAFAGEIPK 153 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCC-------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-----CHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHccCC-------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-----CHHHHHHHHHHHHH
Confidence 47889999999888766421 2233444556677888999999999999999874 45788999999999
Q ss_pred cC--CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHH---HHHHHHHhhcccchhhHHHH
Q 003214 508 GL--RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVF---TLETIVDKFGEEMAPYALGL 582 (838)
Q Consensus 508 ~l--~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~---~l~~iv~~~~~~i~p~~~~l 582 (838)
++ .|+++.||-.|+.|+..++... ++.+.+ +.+++.+..++++.+...... ++..+...-.+...++.+.+
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~ 229 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLA 229 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 99 8999999999999999999864 344432 345556666776544433333 33334333223334455555
Q ss_pred HHHHH
Q 003214 583 CQNLA 587 (838)
Q Consensus 583 ~~~L~ 587 (838)
+..|.
T Consensus 230 ~~~L~ 234 (621)
T 2vgl_A 230 VSRLS 234 (621)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.48 E-value=0.018 Score=64.57 Aligned_cols=259 Identities=16% Similarity=0.159 Sum_probs=146.0
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCc-c-hHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH-----HHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEP-Y-KSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKA 501 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~-~-~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~-----~~~ 501 (838)
+...+..|.++++.++.+-.+... . ....-+ .++..+.++++-+|..|+|++|.++.. +++.. ..+
T Consensus 133 ~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip----~Lv~LL~s~~~~v~e~A~~aL~nLa~~---~~~~r~~i~~~g~ 205 (529)
T 3tpo_A 133 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIP----AFISLLASPHAHISEQAVWALGNIAGA---GSAFRDLVIKHGA 205 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH----HHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH----HHHHHHcCCCHHHHHHHHHHHHHHhcc---CHHHHHHHHHcCC
Confidence 566777777899988864221100 0 000111 223356788999999999999998752 33322 234
Q ss_pred HHHHHhcCCCCCC-----chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcc--c
Q 003214 502 LHSVVSGLRDPEL-----PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE--E 574 (838)
Q Consensus 502 ~~~l~~~l~~~~~-----~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~--~ 574 (838)
++.++..|.+++. .+...|+.++.+++....... -......++..|..++...+.+....++.++..-... +
T Consensus 206 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~ 284 (529)
T 3tpo_A 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 284 (529)
T ss_dssp HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCC-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchh-hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh
Confidence 6778888875432 245568888888887653111 1223466777788888765554444444443322211 1
Q ss_pred chhhH--HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChh
Q 003214 575 MAPYA--LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (838)
Q Consensus 575 i~p~~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~ 652 (838)
..... ..+++.|+. ++... + .......+.++..++.. .+.....-+...++|.+...+.....
T Consensus 285 ~~~~v~~~g~i~~Lv~----lL~~~--~-------~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~ 349 (529)
T 3tpo_A 285 RIEMVVKKGVVPQLVK----LLGAT--E-------LPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKT 349 (529)
T ss_dssp HHHHHHTTTCHHHHHH----HHTCS--C-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSH
T ss_pred hHHHHHhccchHHHHH----HhcCC--C-------hhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCH
Confidence 00000 112223332 33321 1 22344566666666432 11111222345677888888887778
Q ss_pred hHHHHHHHHHHHhhhcCCCCCHhhh--HhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCc
Q 003214 653 EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGT 710 (838)
Q Consensus 653 ~~~~~~l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~ 710 (838)
+...+++..+.++....+.....+. .++|.+..++.+...+........|.++...+.
T Consensus 350 ~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 350 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 8888999999888754322111122 467888888766556666677777877776553
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.39 E-value=0.067 Score=61.64 Aligned_cols=123 Identities=9% Similarity=-0.005 Sum_probs=87.0
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCC
Q 003214 13 ALSPNPEERKAAEHSLNQFQYTP----------QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKIS 82 (838)
Q Consensus 13 ~ls~d~~~r~~Ae~~L~~~~~~p----------~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~ 82 (838)
..++|+.+|..|-..|..+...+ |....|.+.+.+ +.+..+|..|+-.|++....
T Consensus 23 L~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~-------------- 87 (644)
T 2z6h_A 23 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH-------------- 87 (644)
T ss_dssp HTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS--------------
T ss_pred HcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC--------------
Confidence 34689999999999999887633 557778888865 34778999999889865321
Q ss_pred hhhHHH-----HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHhhhh--hH-HHHHHHHHH
Q 003214 83 QVDKDM-----VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQW-----PHLLDWVKHNLQDQ--QV-YGALFVLRI 149 (838)
Q Consensus 83 ~e~k~~-----ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~W-----p~ll~~l~~~l~s~--~~-~~~L~~L~~ 149 (838)
++.+.. .-..|++++.+++..++...+.++..++..+-+ .- ...++.+++.++++ .+ ..++.+|..
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 112222 234566667778899999999999999987522 11 46789999999876 32 344556666
Q ss_pred HH
Q 003214 150 LS 151 (838)
Q Consensus 150 i~ 151 (838)
+.
T Consensus 167 La 168 (644)
T 2z6h_A 167 LA 168 (644)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.33 E-value=0.0038 Score=62.23 Aligned_cols=218 Identities=12% Similarity=0.119 Sum_probs=128.9
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHH-H-HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH-----HHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSEL-E-RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKA 501 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~-~-~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~-----~~~ 501 (838)
+...+..++.+++.++..-.+ ....+ + ..+ ..+...+.++++-+|..|+|+++.++.. +++.. ...
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~i-~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPAS---AIKAIVDAGGV-EVLVKLLTSTDSEVQKEAARALANIASG---PDEAIKAIVDAGG 87 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHH---HHHHHHHTTHH-HHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhcCCcH---HHHHHHHCCCH-HHHHHHHhCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHCCC
Confidence 567788888888888754221 01000 0 111 2233445677899999999999998753 22221 246
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc--ccchhh
Q 003214 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG--EEMAPY 578 (838)
Q Consensus 502 ~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~--~~i~p~ 578 (838)
++.++..+.+++..|+..|+.+|.+++.... ....+.. ...+..|..+++..+.+....++..+..-.. +.....
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999888999999999999995432 1111111 2467777788876544333333333333221 111111
Q ss_pred H--HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHH
Q 003214 579 A--LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVF 655 (838)
Q Consensus 579 ~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~ 655 (838)
. ...++.|+ ++..+ .+ ...+...+.++..+.. .+++.... ....++|.+...+..+..+..
T Consensus 166 ~~~~~~i~~L~----~ll~~--~~-------~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 229 (252)
T 4hxt_A 166 IVDAGGVEVLV----KLLTS--TD-------SEVQKEAARALANIAS---GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQ 229 (252)
T ss_dssp HHHTTHHHHHH----HHTTC--SC-------HHHHHHHHHHHHHHTT---SBHHHHHHHHHTTHHHHHHHGGGCSCHHHH
T ss_pred HHHCcCHHHHH----HHHCC--CC-------HHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHCCCcHHHH
Confidence 1 11333333 34432 11 2334455666666654 23333322 246688999999988888899
Q ss_pred HHHHHHHHHhhhcCCC
Q 003214 656 EEVLEIVSYMTFFSPT 671 (838)
Q Consensus 656 ~~~l~ll~~~~~~~~~ 671 (838)
+.++..+.++....+.
T Consensus 230 ~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 230 KEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHcCCCc
Confidence 9999999999876543
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.33 E-value=0.024 Score=66.77 Aligned_cols=126 Identities=11% Similarity=0.066 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChh
Q 003214 15 SPNPEERKAAEHSLNQFQY----------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQV 84 (838)
Q Consensus 15 s~d~~~r~~Ae~~L~~~~~----------~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e 84 (838)
++|+.+|..|-..|..+.. .++.+..|.+.+.+. .+..+|..|+-.|++.. ..-.. ...-
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls-~~~~~--------~~~i 230 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTSGTLHNLS-HHREG--------LLAI 230 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH-TSHHH--------HHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-CCHHHHHHHHHHHHHHh-CCchh--------HHHH
Confidence 6899999999999998875 457889999999764 37889999999999843 22000 0000
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHhhhh--h-HHHHHHHHHHHH
Q 003214 85 DKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQW-----PHLLDWVKHNLQDQ--Q-VYGALFVLRILS 151 (838)
Q Consensus 85 ~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~W-----p~ll~~l~~~l~s~--~-~~~~L~~L~~i~ 151 (838)
.+...-..|+++|.+++..++...+.++..|+... ++.. ...++.++++++++ . ...++.+|..+.
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11123345666677788999999999999999763 2222 35788899999876 2 344555665444
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.20 E-value=0.0067 Score=68.20 Aligned_cols=253 Identities=12% Similarity=0.132 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhhcccc---hHH-HHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcch---HHHH
Q 003214 386 PRTASMDFVSELVRKRGKE---NLQ-KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK---SELE 458 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~---~~~-~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~---~~~~ 458 (838)
.+..|...|..++...... ++. -.++.+.+++.+ .+...++.|.+++|.++..-.+..+.. .-++
T Consensus 136 ~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s--------~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~ 207 (529)
T 3tpo_A 136 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAID 207 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcH
Confidence 3445666677766533211 110 122333345543 367889999999999985321100000 0122
Q ss_pred HHHhhcccccccCC-----CcchhhHHHHHHHhhhccc--cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 459 RMLVQHVFPEFSSP-----VGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 459 ~~l~~~v~p~l~~~-----~~~lr~ra~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
.++ . .+..+ ..-+.+.++|+++.++... .........+++.++..+.+++..|+..||.||..+....
T Consensus 208 ~Ll-~----lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 208 PLL-A----LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp HHH-H----TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHH-H----HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 222 2 22222 2345778999999987532 1122446788999999999988899999999999998764
Q ss_pred cccccccc-chHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc--ccchhhHHHHH-HHHHHHHHHHHhcccCCCCCCChh
Q 003214 532 RDLNEIRP-ILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG--EEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPG 607 (838)
Q Consensus 532 ~~~~~l~p-~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~--~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~ 607 (838)
. +.... .-..++..|..++...+......++..+..-.. +..+. .++ ...+..+..++.+. +
T Consensus 283 ~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~---~i~~~g~l~~L~~LL~~~--~------- 348 (529)
T 3tpo_A 283 N--ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ---KVIDAGALAVFPSLLTNP--K------- 348 (529)
T ss_dssp H--HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH---HHHHTTGGGGHHHHTTCS--S-------
T ss_pred h--hhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH---HHhhcccHHHHHHHHcCC--C-------
Confidence 3 11110 012345556666665443333333333322211 11111 111 01112222343321 1
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhc
Q 003214 608 ALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 668 (838)
Q Consensus 608 ~~~~~~~l~~i~~i~~~~~~~~~~~~-~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~ 668 (838)
.-.+....-+++.+.. .++.... -+...++|.+-..+.....+...++...+.+++..
T Consensus 349 ~~i~~~a~~aL~nl~~---~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 349 TNIQKEATWTMSNITA---GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHHHHHT---SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 1123334444444432 2332222 23456888888888888888888888888887754
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.11 E-value=0.0021 Score=64.20 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=106.9
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQL 544 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~i 544 (838)
.+.++++-+|..|+|.++.++.........+ ..+++.++..|.+++..|+..|+.+|.++..... ....+. -...
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~ 87 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV--DAGG 87 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HCCC
Confidence 4466778899999999999975321000111 2478899999999888899999999999987632 112221 1235
Q ss_pred HHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 003214 545 LDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623 (838)
Q Consensus 545 l~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~ 623 (838)
+..+..+++..+.+....++..+..-.... ......+.. ..++.+.++... .+ .-.+...+.++..+..
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~--~~-------~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTS--TD-------SEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTC--SC-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcC--CC-------HHHHHHHHHHHHHHHc
Confidence 667777777544333333333333222111 011111111 122222234432 11 2234455666666644
Q ss_pred hhcCChHH-HHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhh
Q 003214 624 SVSRLPHL-FVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 624 ~~~~~~~~-~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~ 667 (838)
. .++. -.-+...++|.+...+..+..+....++..+..+..
T Consensus 158 ~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 158 G---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 2 2222 122346688989999988778889999999988875
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.08 E-value=0.0048 Score=61.63 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=105.9
Q ss_pred cccccCCCcchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc-cccccchH
Q 003214 466 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL-NEIRPILP 542 (838)
Q Consensus 466 ~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~-~~l~p~l~ 542 (838)
+..+.++++-+|..|+|+++.++.........+ ...++.++..|++++..|+..|+.+|.++....... ..+ .-.
T Consensus 60 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~ 137 (252)
T 4db8_A 60 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV--IDA 137 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH--HHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH--HHC
Confidence 334567778999999999999875210011111 237889999999888899999999999998765311 111 112
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHH
Q 003214 543 QLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621 (838)
Q Consensus 543 ~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i 621 (838)
..++.|..+++..+.+....++..+..-.... ......++ ...++.+.++.... + ...+...+.++..+
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~--~-------~~v~~~a~~~L~~l 207 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSP--N-------EQILQEALWALSNI 207 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGCS--S-------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCCC--C-------HHHHHHHHHHHHHH
Confidence 46777778887654433333343333322211 00111111 11222222344321 1 22344556666666
Q ss_pred HHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhh
Q 003214 622 LESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 666 (838)
Q Consensus 622 ~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~ 666 (838)
.. .+++.... ++...+|.+...+..+..+..+.+...+.++.
T Consensus 208 ~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 208 AS---GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TT---SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred hc---CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 52 23333322 24557888888887777777888887777664
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.04 E-value=0.0054 Score=62.63 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=101.6
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCChhH---H--HHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQNN---F--RKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~---~--~~~~~~l~~~l~-~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
.|.++++-+|..|+|++|..+.- ++.. + ...++.++..|. +++..||..|+.||.+++.... +....+.
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~---n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~--~~~~~~~ 164 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQN---VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE--AGLLQFL 164 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc--HHHHHHH
Confidence 67788999999999999998752 3321 1 246778888887 4567799999999999997643 2221222
Q ss_pred -HHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHH--HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHH
Q 003214 542 -PQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALG--LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 615 (838)
Q Consensus 542 -~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~--l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 615 (838)
...+..|..+++..+... ...+|..+... .++...+..+ +++.|+. ++... ++ -.+..++
T Consensus 165 ~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~----LL~~~--d~-------~v~~~al 230 (296)
T 1xqr_A 165 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVA----LVRTE--HS-------PFHEHVL 230 (296)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHH----HHTSC--CS-------THHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHH----HHcCC--Ch-------hHHHHHH
Confidence 145666777776544432 45566666654 2333332222 4444443 44432 21 1344677
Q ss_pred HHHHHHHHhhcCChHHHHHHHhhHHHHHHHH---hc-cC-hhhHHHHHHHHHHHhh
Q 003214 616 RAISTILESVSRLPHLFVQIEPTLLPIMRRM---LT-TD-GQEVFEEVLEIVSYMT 666 (838)
Q Consensus 616 ~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~---l~-~~-~~~~~~~~l~ll~~~~ 666 (838)
.++..|+.........+......+..+++.. ++ ++ ..+.++.+..||..+.
T Consensus 231 ~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 231 GALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 7777777652111111111112233333332 22 33 3566777777777665
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.97 E-value=0.35 Score=56.12 Aligned_cols=302 Identities=8% Similarity=-0.010 Sum_probs=164.3
Q ss_pred CCHHHHHHHHHHHHHhhccc----chH-HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHH
Q 003214 384 YSPRTASMDFVSELVRKRGK----ENL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 458 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~----~~~-~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~ 458 (838)
.+.|..|.-++..+.+..+. +.+ ..+-.|+...+... +...+=-+..++..+..+..+.-.....-+
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~a~~alt~i~~g~~~~~~~~~~~~ 289 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAP--------DMESKVRVTVAITALLNGPLDVGNQVVARE 289 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSC--------CHHHHHHHHHHHHHHHSSSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccC--------ChHhHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 45788888788777776541 222 33344555555431 222233334455555444322100000001
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---ccc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---DLN 535 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~---~~~ 535 (838)
.++ ..+++.+.++++.++..|+|.++..+.-.-...-....-++.+...+.+.+..+|..|+.+|.++-.... ...
T Consensus 290 G~v-~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~ 368 (810)
T 3now_A 290 GIL-QMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIR 368 (810)
T ss_dssp THH-HHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred chH-HHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCcccc
Confidence 222 2234456788999999999999997642100001123334778888887777799999999999864321 112
Q ss_pred ccc-cchHHHHHHHHHHhhhh--chhhHHHHHHHHHHhh-cccchhh-H--HHHHHHHHHHHHHHHhcccCCCCCCChhH
Q 003214 536 EIR-PILPQLLDEFFKLMNEV--ENEDLVFTLETIVDKF-GEEMAPY-A--LGLCQNLAAAFWRCMNTAEADEDADDPGA 608 (838)
Q Consensus 536 ~l~-p~l~~il~~L~~ll~~~--~~~~l~~~l~~iv~~~-~~~i~p~-~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 608 (838)
.+. .-+++++..+.+++... +.+..-.+++.+..-- +.++.-. . ...++.|+. +.++ .|+
T Consensus 369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~----LL~s--~d~------- 435 (810)
T 3now_A 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMD----LARG--GNQ------- 435 (810)
T ss_dssp SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH----HHHT--TCG-------
T ss_pred chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHH----HhCC--CCh-------
Confidence 222 23578888888888876 4555666666665422 2111111 1 123444443 4432 121
Q ss_pred HHHHHHHHHHHHHHHhhcCC---------------------h-----HH----HHHHHhhHHHHHHHHhccChhhHHHHH
Q 003214 609 LAAVGCLRAISTILESVSRL---------------------P-----HL----FVQIEPTLLPIMRRMLTTDGQEVFEEV 658 (838)
Q Consensus 609 ~~~~~~l~~i~~i~~~~~~~---------------------~-----~~----~~~l~~~~~p~i~~~l~~~~~~~~~~~ 658 (838)
....+++.++++|...-.+. + .. -.-++.-.+|.+-..+..+.....+.+
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~A 515 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELI 515 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHH
Confidence 12346677777776532100 0 00 112345688999999988888899999
Q ss_pred HHHHHHhhhcCCCCCHhhh--HhHHHHHHHHhhhHhhhhhhhhhhhhhhhcc
Q 003214 659 LEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISR 708 (838)
Q Consensus 659 l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 708 (838)
...+.++.... +.-..+. ...|.+++++.+............|.+....
T Consensus 516 a~aL~NLA~d~-~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 516 ARVLNAVCGLK-ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Confidence 99999887421 1111122 3567777777543333445555666555443
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.97 E-value=0.094 Score=61.74 Aligned_cols=289 Identities=12% Similarity=0.041 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcc
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v 465 (838)
.|.++..++....+. .+....+..+.+.+.. .+...++.++.+++.++..-....... .....+. .+
T Consensus 131 ~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~--------~d~~vr~~A~~~L~~L~~~~~~~~~i~-~~~~~i~-~L 197 (780)
T 2z6g_A 131 LKHAVVNLINYQDDA---ELATRAIPELTKLLND--------EDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVS-AI 197 (780)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHTSHHHHHHHT-TCHHHHH-HH
T ss_pred HHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCC--------CCHHHHHHHHHHHHHHhCCChhHHHHH-hccChHH-HH
Confidence 566677776644221 1222333444445542 367889999999999886422110000 0001111 11
Q ss_pred ccccc-CCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch-
Q 003214 466 FPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL- 541 (838)
Q Consensus 466 ~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l- 541 (838)
+..|. ++++-+|..|++++..++... .+... -..+++.++..|++++..|+..|+.+|.+++.... +.-....
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~~~~v~~ 274 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE--GAKMAVRL 274 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST--THHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh--hhHHHHHH
Confidence 22233 347889999999999876521 01111 13578889999998888899999999999998742 1111111
Q ss_pred HHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhh--HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003214 542 PQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPY--ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (838)
Q Consensus 542 ~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~--~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (838)
..++..|+.++...+.+. ...++..+.... ++.... ....+..|+. ++... ++ + .....+..
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~e~~~~i~~~~~i~~Lv~----lL~~~--~~----~--~~~~~a~~ 341 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QESKLIILASGGPQALVN----IMRTY--TY----E--KLLWTTSR 341 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHH----HHTTC--CC----H--HHHHHHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCCHHHHHH----HHhcC--CH----H--HHHHHHHH
Confidence 246777778887533221 233444332110 111100 0112333332 44322 11 1 11122333
Q ss_pred HHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhh
Q 003214 617 AISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFF 695 (838)
Q Consensus 617 ~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l 695 (838)
++..+.. .+..... +...++|.+...+..........++..+..+....+.. .....+.|.+.+++.+.+.+..
T Consensus 342 aL~~Ls~----~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~i~~Lv~lL~~~d~~vr 416 (780)
T 2z6g_A 342 VLKVLSV----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVV 416 (780)
T ss_dssp HHHHHHT----STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhhc----ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHHHcCCCHHHH
Confidence 3333332 2222222 24567788888887777778888888888887655331 2234677888888765555566
Q ss_pred hhhhhhhhhhhcc
Q 003214 696 PNILVPLDNYISR 708 (838)
Q Consensus 696 ~~~~~~L~~~i~~ 708 (838)
.....+|.+....
T Consensus 417 ~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 417 TCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhC
Confidence 6677777666543
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.92 E-value=0.011 Score=65.99 Aligned_cols=300 Identities=12% Similarity=0.129 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHhhccc---chHH-HHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcc---hHHHH
Q 003214 386 PRTASMDFVSELVRKRGK---ENLQ-KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY---KSELE 458 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~---~~~~-~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~---~~~~~ 458 (838)
.+..|...|..++....+ .++. -.++.+.+.+.+ ++...++.|.+++|.++..-....+. ..-++
T Consensus 117 lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s--------~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~ 188 (510)
T 3ul1_B 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 188 (510)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH
Confidence 344566677777643221 1111 122333345543 36789999999999998532110000 00122
Q ss_pred HHHhhcc-cccccCCCcchhhHHHHHHHhhhcccc--CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 003214 459 RMLVQHV-FPEFSSPVGHLRAKAAWVAGQYAHINF--SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (838)
Q Consensus 459 ~~l~~~v-~p~l~~~~~~lr~ra~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~ 535 (838)
.++ ..+ .+.......-+++.++|+++..+...- ........+++.++..+.+++..|+..||.||..+++... +
T Consensus 189 ~Ll-~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~ 265 (510)
T 3ul1_B 189 PLL-ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--E 265 (510)
T ss_dssp HHH-HHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--H
T ss_pred HHH-HHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--h
Confidence 222 211 011111223467789999999875321 1224457889999999999888899999999999987643 1
Q ss_pred cccc-chHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 003214 536 EIRP-ILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVG 613 (838)
Q Consensus 536 ~l~p-~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 613 (838)
.... .-..++..|..++...+......++..+..-.... ......++. ..+..+.+++.+ + + .-.+..
T Consensus 266 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~----~----~-~~v~~~ 335 (510)
T 3ul1_B 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTN----P----K-TNIQKE 335 (510)
T ss_dssp HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTC----S----S-HHHHHH
T ss_pred hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcC----C----C-HHHHHH
Confidence 1110 01234555666776544433333333333221110 000111110 011111112221 1 1 112333
Q ss_pred HHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCC-CCHhhh--HhHHHHHHHHhh
Q 003214 614 CLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT-ISLEMW--SLWPLMMEALAD 689 (838)
Q Consensus 614 ~l~~i~~i~~~~~~~~~~~~-~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~-~~~~l~--~l~~~l~~~~~~ 689 (838)
..-+++.+.. .++.... -+...++|.+-..+.....+...++...+.+++..... .-..+. ...+.+++++..
T Consensus 336 A~~aL~nl~a---~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 336 ATWTMSNITA---GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHc---CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 3444444432 2222222 23456888888888888888888888888888764321 000111 235555665544
Q ss_pred hHhhhhhhhhhhhhhhhccC
Q 003214 690 WAIDFFPNILVPLDNYISRG 709 (838)
Q Consensus 690 ~~~~~l~~~~~~L~~~i~~~ 709 (838)
.+...+..++..|.+.+..+
T Consensus 413 ~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 44445555555565555443
No 56
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.86 E-value=0.0074 Score=58.29 Aligned_cols=181 Identities=14% Similarity=0.164 Sum_probs=107.3
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHH-----HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccc
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIR 538 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~ 538 (838)
+.+.+.++++-+|..|+|.++.++.. +++.. ..+++.++..|.+++..|+..|+.+|.+++.... ....+.
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 33456788899999999999999753 22221 2578899999999888999999999999985432 111111
Q ss_pred cchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHHhcccCCCCCCChhHHHHHHH
Q 003214 539 PILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (838)
Q Consensus 539 p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (838)
-...+..|+.+++..+.+. ...+|..+...-.+ ....++ ...++.+.+++++. + ...+...
T Consensus 94 --~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~i~~L~~ll~~~--~-------~~v~~~a 158 (210)
T 4db6_A 94 --DAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVIDAGALPALVQLLSSP--N-------EQILQEA 158 (210)
T ss_dssp --HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTHHHHHHHHTTCS--C-------HHHHHHH
T ss_pred --HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH----HHHHHHHcCcHHHHHHHHcCC--C-------HHHHHHH
Confidence 1235666777777654333 33344444321111 111111 11222333344321 1 2234456
Q ss_pred HHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhh
Q 003214 615 LRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 666 (838)
Q Consensus 615 l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~ 666 (838)
+.++..+... +++.... .....+|.+...+..+..+..+.+...+..+.
T Consensus 159 ~~aL~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 159 LWALSNIASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTS---CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC---CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 6666666543 2222222 34568888888888777888888888887764
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.79 E-value=0.018 Score=58.66 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhccc--------chHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHH
Q 003214 386 PRTASMDFVSELVRKRGK--------ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~--------~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~ 457 (838)
.|..|...|..++...+. ..+++++. ++.+ . .+-..++.++++++.++.+-.. ..
T Consensus 98 vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~----LL~~---~----~~~~v~~~A~~ALsnl~~~~~~------~~ 160 (296)
T 1xqr_A 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR----LLDR---D----ACDTVRVKALFAISCLVREQEA------GL 160 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH----HHHH---C----SCHHHHHHHHHHHHHHHTTCHH------HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH----HHcc---C----CCHHHHHHHHHHHHHHHcCCcH------HH
Confidence 566677777777654321 23444444 4432 1 1457788999999998753211 11
Q ss_pred HHHHh----hcccccccCCCcchhhHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 458 ERMLV----QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 458 ~~~l~----~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
..+.. ..+...+.++++.++..|||+++.++.........+ ..+++.++..|.+++..|+..|+.||.+++...
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 11111 122234467889999999999999875321111222 357788889999889999999999999999874
No 58
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.68 E-value=0.34 Score=53.94 Aligned_cols=255 Identities=14% Similarity=0.048 Sum_probs=141.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcc---hHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCChhH--HHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPY---KSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNN--FRKA 501 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~---~~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~ 501 (838)
++...++.+..+++.++..-...... ..-++. +...+. ++++.+|..|++.++.++... ..... -...
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~-----Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~ 102 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGG 102 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCC
Confidence 36788888888999887542111000 011222 122233 347789999999999886521 11111 1247
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchh
Q 003214 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAP 577 (838)
Q Consensus 502 ~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p 577 (838)
++.++..|+++++.++..|+.+|.+++.... ....+. -...+..|..+++..+.+. ...++..+... .++...
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-~~~~~~ 179 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKL 179 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-CHHHHH
Confidence 7889999998888899999999999988742 111111 1356777777877533222 22344433321 111111
Q ss_pred h--HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhH
Q 003214 578 Y--ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEV 654 (838)
Q Consensus 578 ~--~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~ 654 (838)
. ....++.|+. ++... ++ ......+..++..+ ..+++.... +....+|.+...+..+..++
T Consensus 180 ~i~~~~~i~~L~~----ll~~~--~~------~~~~~~a~~~L~~l----~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 180 IILASGGPQALVN----IMRTY--TY------EKLLWTTSRVLKVL----SVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHTTHHHHHHH----HHHHC--CC------HHHHHHHHHHHHHH----TTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHCCCHHHHHH----HHHhC--Ch------HHHHHHHHHHHHHH----hcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 0 0012233332 33322 11 11122223333333 233332222 23567888888887777788
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhcc
Q 003214 655 FEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR 708 (838)
Q Consensus 655 ~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 708 (838)
...++..+..+....+.. .......|.+.+++.+.+.+........|.+....
T Consensus 244 ~~~a~~~L~~l~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCChhh-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 889999998888754332 23446788888888655556666777777766554
No 59
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.63 E-value=0.13 Score=59.13 Aligned_cols=258 Identities=14% Similarity=0.042 Sum_probs=143.5
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccC-CCcchhhHHHHHHHhhhccccCChhHH--HHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHS 504 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~ 504 (838)
++...++.+..+++.++..-....... .-...+. .++..|.+ +++-+|..|+.++..++... .....+ ...++.
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~-~~~~~i~-~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~ 102 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVS-AIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPA 102 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHT-TCHHHHH-HHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHH-hccChHH-HHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHH
Confidence 367889999999999886432110000 0001111 12222333 46788999999998876421 011111 247788
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHhhhhchhhH---HHHHHHHHHhhcccchh--h
Q 003214 505 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEEMAP--Y 578 (838)
Q Consensus 505 l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~l---~~~l~~iv~~~~~~i~p--~ 578 (838)
++..|++++..|+..|+.+|.+++.... +....+. ...+..|+.+++..+.+.. ..+|..+.... ++... .
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~~i~ 179 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QESKLIIL 179 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHST--THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCcc--hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 8999998888899999999999998742 1111111 3567777778875433222 22344443211 11100 0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHH
Q 003214 579 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEE 657 (838)
Q Consensus 579 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~ 657 (838)
....++.|+ +++.+.. . + .....+..++..+. ..++.... +....+|.+...+......+...
T Consensus 180 ~~g~v~~Lv----~lL~~~~-~-----~--~~~~~a~~~L~nLs----~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 180 ASGGPQALV----NIMRTYT-Y-----E--KLLWTTSRVLKVLS----VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp HTTHHHHHH----HHHTTCC-C-----H--HHHHHHHHHHHHHT----TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred HcCChHHHH----HHHHcCC-h-----H--HHHHHHHHHHHHHh----cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 111233333 3443321 1 1 11223333333332 23322222 23457888888887777888899
Q ss_pred HHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhcc
Q 003214 658 VLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR 708 (838)
Q Consensus 658 ~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 708 (838)
++..+.++.+..+.. ......+|.+++++.+.+.+.......+|.+....
T Consensus 244 a~~~L~nL~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHGGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999988765332 23346788888888655555666677777666554
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.47 E-value=0.011 Score=58.98 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCCh--hH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQ--NN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILP 542 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~--~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~ 542 (838)
.+.++++-+|..|+|.+..+.... ++ .. -..+++.++..|++++..|+..|+.+|.++..... ....+.. .
T Consensus 20 ~L~s~~~~~~~~a~~~L~~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~ 95 (252)
T 4db8_A 20 QLNSDDMQEQLSATRKFSQILSDG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--A 95 (252)
T ss_dssp HHHSSCSSHHHHHHHHHHHHHHHH--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--T
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCC--CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--c
Confidence 356788999999999997764321 11 11 23567889999998888899999999999987432 1121111 1
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHH
Q 003214 543 QLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621 (838)
Q Consensus 543 ~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i 621 (838)
..+..|..+++..+.+....++..+..-.... ......+.. ..++.+.++++.. + ...+...+.++..+
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~--~-------~~v~~~a~~~L~~l 165 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSP--N-------EQILQEALWALSNI 165 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGCS--C-------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-chHHHHHHHCCCHHHHHHHHhCC--C-------HHHHHHHHHHHHHH
Confidence 36777788887643332333333332211111 000011111 1222233344321 1 22334455555555
Q ss_pred HHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhh
Q 003214 622 LESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 622 ~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~ 667 (838)
... .++.... +...++|.+-..+..+..+....++..+.++..
T Consensus 166 ~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 166 ASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp TTS---CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HcC---ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 432 2222222 336678888888888878889999999998874
No 61
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.39 E-value=0.015 Score=56.04 Aligned_cols=153 Identities=13% Similarity=0.184 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHhhcccc---hH-HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHH
Q 003214 384 YSPRTASMDFVSELVRKRGKE---NL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 459 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~---~~-~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~ 459 (838)
...|..|...|..++...+.. +. ...++.+.+.+.. .+...++.++.+++.++..-.+. ...
T Consensus 26 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~------~~~ 91 (210)
T 4db6_A 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQ------IQA 91 (210)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHHH------HHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCcHH------HHH
Confidence 346777888888887543211 11 0123344445543 36788999999999987431110 011
Q ss_pred HHh----hcccccccCCCcchhhHHHHHHHhhhccccCChhH-----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 460 MLV----QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 460 ~l~----~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
++. ..++..+.++++.+|..|+|+++.++.. +++. -...++.++..+.+++..|+..|+.+|.+++..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 1233345677899999999999999752 2222 134688899999988889999999999999976
Q ss_pred cc-cccccccchHHHHHHHHHHhhhh
Q 003214 531 CR-DLNEIRPILPQLLDEFFKLMNEV 555 (838)
Q Consensus 531 ~~-~~~~l~p~l~~il~~L~~ll~~~ 555 (838)
.. ....+ .-...++.|..++...
T Consensus 169 ~~~~~~~~--~~~g~i~~L~~ll~~~ 192 (210)
T 4db6_A 169 GNEQKQAV--KEAGALEKLEQLQSHE 192 (210)
T ss_dssp CHHHHHHH--HHTTHHHHHHHGGGCS
T ss_pred CcHHHHHH--HHCCCHHHHHHHHhCC
Confidence 32 11111 1124666677777653
No 62
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.31 E-value=0.32 Score=51.54 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=103.7
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 003214 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (838)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ 550 (838)
.+++-.+.=|+.+|.+|-.. | |+.....+.+.+.+..|.|..||..|.+.|-.+|.+ -+++.+.+.|.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~-F--P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKH-F--PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--------ENLPRVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGG-C--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--------TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh-C--hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--------hhhhhHHHHHHH
Confidence 45688899999999999763 3 467788999999999999999999999999888765 258888999999
Q ss_pred HhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChH
Q 003214 551 LMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPH 630 (838)
Q Consensus 551 ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~ 630 (838)
+++.-+..++..+=.+++..+..+-.--...++.+ +... | ...+..++..|..-+..+..+.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~-------i~~~---~-------e~~Rer~lkFi~~kl~~l~~~~- 169 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ-------ILQG---E-------DIVRERAIKFLSTKLKTLPDEV- 169 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-------HHHS---C-------HHHHHHHHHHHHHHGGGSCTTT-
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH-------Hccc---c-------hHHHHHHHHHHHHHHhhcchhh-
Confidence 99976666665555566655543322112222222 2221 2 2456677888777777765432
Q ss_pred HHHHHHhhHHHHHHHHhc
Q 003214 631 LFVQIEPTLLPIMRRMLT 648 (838)
Q Consensus 631 ~~~~l~~~~~p~i~~~l~ 648 (838)
.-..++..+.-.+..+++
T Consensus 170 l~~E~E~~i~~~ikK~L~ 187 (507)
T 3u0r_A 170 LTKEVEELILTESKKVLE 187 (507)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhc
Confidence 124567888888999984
No 63
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.19 E-value=0.23 Score=59.73 Aligned_cols=380 Identities=12% Similarity=0.087 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHhccccCCCCCCcchh--hHhHHHHHHHHHHHHhhcCCcchHHH
Q 003214 384 YSPRTASMDFVSELVRKRG----KENLQKFIQFIVGIFKRYDETPVEYKPYR--QKDGALLAIGALCDKLKQTEPYKSEL 457 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~----~~~~~~il~~~~~~l~~~~~~~~~~~~~~--~~ea~l~~lg~i~~~l~~~~~~~~~~ 457 (838)
|..+.++.-.+.+++.... +..++.++..+.+.... +.. ++-+ ..-..++.+|.-++-+.....+ +
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~----~~~-kd~k~~vas~i~~vlgrY~~wl~~h~~~---L 564 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ----KRG-KDNKAIIASNIMYIVGQYPRFLRAHWKF---L 564 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH----SCS-HHHHHHHHHHHHHHHHHCHHHHHHCHHH---H
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc----ccc-cchhHHHHHHHHHHHhhhHHHHHhCHHH---H
Confidence 5667777777777765443 24566666666555432 110 1222 3333457888877777654332 3
Q ss_pred HHHHhhcccccccCCCcchhhHHHHHHHhhhc-c--ccCC------hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 003214 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-I--NFSD------QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 458 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~-~--~~~~------~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
+..+. .++..+.++++-++..||-++..+++ + .+-. ...+.++++.+-+...+-++.-...-..|+..++
T Consensus 565 ~~vl~-~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 565 KTVVN-KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHH-HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33332 23334466789999999999888754 1 1111 1244555554444433322223344556677777
Q ss_pred Hhcc----cccccccchHHHHHHHHHHhhhh--------ch---hhHH---HHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 003214 529 EACR----DLNEIRPILPQLLDEFFKLMNEV--------EN---EDLV---FTLETIVDKFGEEMAPYALGLCQNLAAAF 590 (838)
Q Consensus 529 ~~~~----~~~~l~p~l~~il~~L~~ll~~~--------~~---~~l~---~~l~~iv~~~~~~i~p~~~~l~~~L~~~~ 590 (838)
+... ....+.-.+++.++.+-.+++.. +. ..+. .+..++....+....|++..+...+.+.+
T Consensus 644 ~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y 723 (1073)
T 3gjx_A 644 GAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY 723 (1073)
T ss_dssp TTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 6653 12334445555555555555421 11 1233 33445566778878888877777666533
Q ss_pred HHH---Hhcc--cCCCCCCChhHHHHHHHHHHHH----HH-HHhhcCChHHHHHHHhhHHHHHHHHhccC---hhhH-HH
Q 003214 591 WRC---MNTA--EADEDADDPGALAAVGCLRAIS----TI-LESVSRLPHLFVQIEPTLLPIMRRMLTTD---GQEV-FE 656 (838)
Q Consensus 591 ~~~---~~~~--~~d~~~~~~~~~~~~~~l~~i~----~i-~~~~~~~~~~~~~l~~~~~p~i~~~l~~~---~~~~-~~ 656 (838)
... +.+. .+.+.. ...+. ...+.++. .+ ...++...+.-.-....+=|++..++... ..+. ..
T Consensus 724 ~~~s~~i~~~v~~~g~~~-~~~~~--~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~ 800 (1073)
T 3gjx_A 724 KCLSENISAAIQANGEMV-TKQPL--IRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREP 800 (1073)
T ss_dssp HHHHHHHHHHHHHHCGGG-GSSHH--HHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCT
T ss_pred HHHHHHHHHHHHhCCchh-hccHH--HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccH
Confidence 221 1110 000000 00011 11223322 12 22233222111112244455555555421 1112 25
Q ss_pred HHHHHHHHhhhcC-CCCCHhhhHhHHHHHHH----Hhh---hHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHH
Q 003214 657 EVLEIVSYMTFFS-PTISLEMWSLWPLMMEA----LAD---WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSM 728 (838)
Q Consensus 657 ~~l~ll~~~~~~~-~~~~~~l~~l~~~l~~~----~~~---~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~ 728 (838)
+.|.+.+.++... ..+.|.+..++..++++ +++ +..++...++.++.++..+..+.+++- .+.....++..
T Consensus 801 evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l-~~~~~~~~i~~ 879 (1073)
T 3gjx_A 801 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAI-PPAQFKLVLDS 879 (1073)
T ss_dssp HHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHH
Confidence 7888888887654 34566666666665544 433 234566778899999999998888852 22344555554
Q ss_pred HHHHhcCCCCCCCccCchhHHHHHHHHHcccC-------cccchHHHHHHHHHHHhh
Q 003214 729 VSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-------VDHWVEPYLRITVERLRR 778 (838)
Q Consensus 729 ~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~-------~~~~l~~il~~~l~~l~~ 778 (838)
+.-.+.++..+. ...+.+++..++.+.... +..|...+++.++..+.+
T Consensus 880 i~wa~kh~~r~i--~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td 934 (1073)
T 3gjx_A 880 IIWAFKHTMRNV--ADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTD 934 (1073)
T ss_dssp HHHHHTCSSHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCChhH--HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444332221 235778888888775531 234445566666666655
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.97 E-value=0.058 Score=56.56 Aligned_cols=183 Identities=10% Similarity=0.063 Sum_probs=97.1
Q ss_pred CcchhhHHHHHHHhhhccccCChhHH---HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc--ccccccccchHHHHHH
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNNF---RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC--RDLNEIRPILPQLLDE 547 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~--~~~~~l~p~l~~il~~ 547 (838)
++-++..|+|+++..+.-.-...... ..+++.++..|.+++..|+..|+.||.++.... ..+..+.. ...+..
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~Ip~ 174 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCHHH
Confidence 46799999999999874220011112 345899999999888889999999999998642 11233321 134555
Q ss_pred HHHHhhhhchhh----HHHHHHHHHHhhcccchhhH---HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHH
Q 003214 548 FFKLMNEVENED----LVFTLETIVDKFGEEMAPYA---LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (838)
Q Consensus 548 L~~ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~---~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (838)
|..++....... ...+|..+.... ++..+-. ...++.|+ +++....+.+ .... .....-++..
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~~nk~~i~~~~Gai~~Lv----~lL~~~~~~~----~~~v-~~~A~~aL~n 244 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLV----GTLTYRSQTN----TLAI-IESGGGILRN 244 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHSTTHHHHHH----HHTTCCCSSS----CCHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHccC-hhhhHHHHHhcCcHHHHH----HHhccCCCcc----cHHH-HHHHHHHHHH
Confidence 556543322222 334454444312 1111111 11233333 3444321110 0011 1122233333
Q ss_pred HHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhh
Q 003214 621 ILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 621 i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~ 667 (838)
+...+..+++.... .+.-.+|.+-..+........+++...+.++..
T Consensus 245 Ls~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 245 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 33221122322222 234578888888887777888999988888874
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.92 E-value=0.049 Score=64.22 Aligned_cols=189 Identities=15% Similarity=0.210 Sum_probs=124.9
Q ss_pred hHHHHHHHhhhccc-c--CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003214 478 AKAAWVAGQYAHIN-F--SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (838)
Q Consensus 478 ~ra~~~l~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (838)
-+||..++..++.. . .-+..+...++.++....|....||.+|..|+..++...+ ++.+...+|.++..+-.--+-
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~kw 148 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN-PVAIKALLPHLTNAIVETNKW 148 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhccccch
Confidence 88888888887421 1 1124566788999999999888999999999999999875 555544555554443111111
Q ss_pred hchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003214 555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 634 (838)
Q Consensus 555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~ 634 (838)
......+.+++.+++...+.+.-.++++++.+..++ |+. +.-.......++..+...++ |.++
T Consensus 149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~d~----------k~~v~~~~~~~~~~~~~~~~-n~d~--- 211 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM---WDT----------KKEVKAAATAAMTKATETVD-NKDI--- 211 (986)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT---TCS----------SHHHHHHHHHHHHHHGGGCC-CTTT---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc---ccC----------cHHHHHHHHHHHHHHHhcCC-Ccch---
Confidence 122236788888888777777777888888777642 321 22334456677777776664 3443
Q ss_pred HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHh
Q 003214 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALA 688 (838)
Q Consensus 635 l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~ 688 (838)
+.++|.+-.++.+... .+++...++..+....--+|.+--+.|.+.+-+.
T Consensus 212 --~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~ 261 (986)
T 2iw3_A 212 --ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLN 261 (986)
T ss_dssp --GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred --hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence 4577888888765533 7788888877776654445666666777766653
No 66
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.80 E-value=0.11 Score=49.36 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=56.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
+++..+..++.+++.+... . .++.+ .. .+.++++.+|..|++.+|.+.. + ..++.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~-----~---~~~~L-~~----~l~~~~~~vr~~a~~~L~~~~~-----~----~~~~~L~~ 83 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDE-----R---AVEPL-IK----ALKDEDAWVRRAAADALGQIGD-----E----RAVEPLIK 83 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCG-----G---GHHHH-HH----HTTCSSHHHHHHHHHHHHHHCC-----G----GGHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCh-----h---HHHHH-HH----HHcCCCHHHHHHHHHHHHhhCC-----H----HHHHHHHH
Confidence 4789999999999876531 1 12222 22 3467889999999999998753 2 23566667
Q ss_pred cCCCCCCchHHHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSF 527 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~ 527 (838)
.|+|+++.||..|+.+|..+
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHh
Confidence 78888889999999999886
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.80 E-value=0.047 Score=55.31 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcc
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v 465 (838)
.|..|...|..+.. .....+.++..+.+.+.+ .+++..+.++..++|.+...... ......+. +
T Consensus 70 vR~~A~~aL~~l~~--~~~~~~~l~~~L~~~~~~-------d~~~~vr~~a~~aL~~l~~~~~~---~~~~~~~~----L 133 (280)
T 1oyz_A 70 RRDIGAFILGQIKI--CKKCEDNVFNILNNMALN-------DKSACVRATAIESTAQRCKKNPI---YSPKIVEQ----S 133 (280)
T ss_dssp HHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHHCGG---GHHHHHHH----H
T ss_pred HHHHHHHHHHHhcc--ccccchHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHhccCCc---ccHHHHHH----H
Confidence 56666666654421 123344555554432222 14789999999999988754221 11122222 3
Q ss_pred cccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 003214 466 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (838)
Q Consensus 466 ~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il 545 (838)
...++++++.+|..|++.+|.+.. + ..++.++..+.|++..||..|+.+|..+-.. -+.++
T Consensus 134 ~~~l~d~~~~vR~~a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~ 194 (280)
T 1oyz_A 134 QITAFDKSTNVRRATAFAISVIND-----K----ATIPLLINLLKDPNGDVRNWAAFAININKYD----------NSDIR 194 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHTC------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHhcCC-----H----HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC----------cHHHH
Confidence 334678899999999999998754 1 1456667778888889999999999876211 23556
Q ss_pred HHHHHHhhhhchhhHHHHHHHHHHhhc
Q 003214 546 DEFFKLMNEVENEDLVFTLETIVDKFG 572 (838)
Q Consensus 546 ~~L~~ll~~~~~~~l~~~l~~iv~~~~ 572 (838)
..|..++++.+...-..++..+.....
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 666777765443333444555444333
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.79 E-value=0.31 Score=46.30 Aligned_cols=195 Identities=14% Similarity=0.148 Sum_probs=123.6
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC--ChhHHHHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS--DQNNFRKALHSVV 506 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~--~~~~~~~~~~~l~ 506 (838)
.|+.|++.=.+... + ..+ ..+...+.+.++.++.|++.+++..-+-..+ +......+++.++
T Consensus 18 sWkiK~a~ela~~~--e-------------~~l-~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI 81 (265)
T 3b2a_A 18 SWQILDAVSLALED--K-------------RAL-FLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFI 81 (265)
T ss_dssp TTCHHHHHHHHHHC--H-------------HHH-HHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhc--h-------------hHH-HHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 79999987433321 1 111 1244456788999999999999998553101 2245789999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchh----hHHHHHHHHHHhhcccchhhHHH
Q 003214 507 SGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENE----DLVFTLETIVDKFGEEMAPYALG 581 (838)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~----~l~~~l~~iv~~~~~~i~p~~~~ 581 (838)
..+.+++-.|.+.|.++|+.++++.+ .++ -..-++..+..++.+ .++ +....++.+ .++...+.
T Consensus 82 ~llk~~dEkval~A~r~L~~LLe~vpL~~~----~y~Kl~~aL~dlik~-~~~il~~eaae~Lgkl------kv~~~~~~ 150 (265)
T 3b2a_A 82 NALSQENEKVTIKALRALGYLVKDVPMGSK----TFLKAAKTLVSLLES-PDDMMRIETIDVLSKL------QPLEDSKL 150 (265)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHTTCCBCHH----HHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHC------CBSCCCHH
T ss_pred HHHhccchhHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHHhcC-CCchHHHHHHHHhCcC------CcccchHH
Confidence 99999999999999999999999864 222 233455555555553 222 233333333 33333445
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHH
Q 003214 582 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEI 661 (838)
Q Consensus 582 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~l 661 (838)
+...+.. ++. +.| ......-+..+.++...-+ ++++. ..++.-+...++.++..+.+-+++.
T Consensus 151 V~~~l~s----Ll~--Skd-------~~vK~agl~~L~eia~~S~-D~~i~----~~I~~eI~elL~~eD~~l~e~aLd~ 212 (265)
T 3b2a_A 151 VRTYINE----LVV--SPD-------LYTKVAGFCLFLNMLNSSA-DSGHL----TLILDEIPSLLQNDNEFIVELALDV 212 (265)
T ss_dssp HHHHHHH----HHT--CSS-------HHHHHHHHHHHHHHGGGCS-SCCCG----GGTTTTHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHH----HHh--CCC-------hhHHHHHHHHHHHhhcccC-CHHHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555543 552 222 2234445666666655433 34333 4455667788888888999999999
Q ss_pred HHHhhhc
Q 003214 662 VSYMTFF 668 (838)
Q Consensus 662 l~~~~~~ 668 (838)
+..++.+
T Consensus 213 Le~ils~ 219 (265)
T 3b2a_A 213 LEKALSF 219 (265)
T ss_dssp HHHHTTS
T ss_pred HHHHHcC
Confidence 9988854
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.77 E-value=0.059 Score=51.88 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=100.9
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
+++..+..++.++|.+... . -++. |.. .+.++++.+|..|++.+|++.. + ..++.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-----~---~~~~-L~~----~l~~~~~~vr~~a~~aL~~~~~-----~----~~~~~L~~ 88 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-----R---AVEP-LIK----ALKDEDAWVRRAAADALGQIGD-----E----RAVEPLIK 88 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-----G---GHHH-HHH----HTTCSCHHHHHHHHHHHHHHCC-----G----GGHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-----c---HHHH-HHH----HHcCCCHHHHHHHHHHHHhhCC-----H----HHHHHHHH
Confidence 4789999999999876431 1 1222 222 3467889999999999999763 2 23456667
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 587 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (838)
.|+|+++.||..|+.+|..+-+. ..+..|..++++.+...-..++..+...-.++.. ..|.
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~L~ 149 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV-------EPLI 149 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-------HHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHH-------HHHH
Confidence 78899999999999999886321 1234444555554433344445554443332222 2222
Q ss_pred HHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhh
Q 003214 588 AAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 588 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~ 667 (838)
. ..+ |+ ....+....+++..+ + . +...|.+...++.+.......+...+..+-.
T Consensus 150 ~----~l~----d~-----~~~vr~~a~~aL~~~----~-~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 150 K----ALK----DE-----DGWVRQSAADALGEI----G-G--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp H----HTT----CS-----SHHHHHHHHHHHHHH----C-S--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred H----HHc----CC-----CHHHHHHHHHHHHHh----C-c--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2 221 22 133455556665554 2 1 3456666666766666677777776665543
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.72 E-value=0.02 Score=54.85 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
...|..|...|..+. +...++.++ +.+.. +++..+..++.++|.+... . .++. +..
T Consensus 28 ~~vr~~A~~~L~~~~---~~~~~~~L~----~~l~~--------~~~~vr~~a~~~L~~~~~~-----~---~~~~-L~~ 83 (201)
T 3ltj_A 28 YYVRRAAAYALGKIG---DERAVEPLI----KALKD--------EDAWVRRAAADALGQIGDE-----R---AVEP-LIK 83 (201)
T ss_dssp HHHHHHHHHHHHHHC---CGGGHHHHH----HHTTC--------SSHHHHHHHHHHHHHHCCG-----G---GHHH-HHH
T ss_pred HHHHHHHHHHHHhcC---ChhHHHHHH----HHHcC--------CCHHHHHHHHHHHHhhCCH-----H---HHHH-HHH
Confidence 457777776665543 234554444 34432 3788899999999876431 1 1222 222
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~ 528 (838)
.+.++++.+|..|++.+|++.. ++ .++.+...+.|++..||..|+.+|..+-
T Consensus 84 ----~l~d~~~~vr~~a~~aL~~~~~-----~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 84 ----ALKDEDGWVRQSAAVALGQIGD-----ER----AVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ----HTTCSSHHHHHHHHHHHHHHCC-----GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ----HHcCCCHHHHHHHHHHHHHhCc-----HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3567899999999999999753 22 3555677788999999999999999873
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.67 E-value=0.17 Score=56.40 Aligned_cols=292 Identities=12% Similarity=0.091 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHhhccc--chH--HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHH--H
Q 003214 386 PRTASMDFVSELVRKRGK--ENL--QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE--R 459 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~--~~~--~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~--~ 459 (838)
.|..|...|..++..... ..+ +..+..+.+.+.+. .++..+..+..+++.++..-. ....+. .
T Consensus 33 v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-------~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~g 101 (529)
T 1jdh_A 33 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTAGTLHNLSHHRE----GLLAIFKSG 101 (529)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTSHH----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCch----hHHHHHHcC
Confidence 567777788887754321 111 12333344455431 367888888888888764311 011110 0
Q ss_pred HHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccc
Q 003214 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNE 536 (838)
Q Consensus 460 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~ 536 (838)
.+ ..+...+.++++-++..|+|+++..+......... -...++.++..+.+++..++..|+.+|..+..... .+..
T Consensus 102 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 102 GI-PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 11 11222356678899999999999987532111111 25678899999998888899999999998876421 1122
Q ss_pred cccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc--ccchhhHHHHH-HHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 003214 537 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG--EEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVG 613 (838)
Q Consensus 537 l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~--~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 613 (838)
+.. ...+..|+.++...+.+........++..+. ++... .++ ...++.+.++.... + .-.+..
T Consensus 181 i~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~g~~~~L~~ll~~~--~-------~~~~~~ 246 (529)
T 1jdh_A 181 ILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDP--S-------QRLVQN 246 (529)
T ss_dssp HHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH---HHHHTTHHHHHHTTTTSS--C-------HHHHHH
T ss_pred HHH--CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH---HHHHCCCHHHHHHHHhCC--C-------hHHHHH
Confidence 211 1345666667766544444333333333222 11111 111 11222222233211 1 122334
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhh--HhHHHHHHHHhhhH
Q 003214 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWA 691 (838)
Q Consensus 614 ~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~ 691 (838)
+..++..+....... . ....++|.+...+..+..+..+.++..+..+....+.....+. ...|.+.+++.+.+
T Consensus 247 a~~~L~~l~~~~~~~-~----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQ-E----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHTTCTTC-S----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCChhh-H----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 555666655432211 1 1245778888888777788889999988888654211111122 34667777764321
Q ss_pred --hhhhhhhhhhhhhhhcc
Q 003214 692 --IDFFPNILVPLDNYISR 708 (838)
Q Consensus 692 --~~~l~~~~~~L~~~i~~ 708 (838)
.+.....+..|.+....
T Consensus 322 ~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 322 DREDITEPAICALRHLTSR 340 (529)
T ss_dssp TCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHcC
Confidence 34555666777666544
No 72
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.59 E-value=0.36 Score=48.59 Aligned_cols=184 Identities=13% Similarity=-0.005 Sum_probs=105.5
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
+++..+..+..++|.+... .-++. + ...+.++++.+|..|++.+|++... +.....+++.+..
T Consensus 35 ~~~~vr~~A~~~L~~~~~~--------~~~~~-L----~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ--------DAVRL-A----IEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNN 97 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH--------HHHHH-H----HHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc--------hHHHH-H----HHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHH
Confidence 3788888999999877521 11222 2 2245678899999999999998641 2234556666653
Q ss_pred -cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 003214 508 -GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNL 586 (838)
Q Consensus 508 -~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L 586 (838)
.++|++..||..|+.+|..+..... ++.+.++..|..++++.+...-..++..+.....+.. ++.|
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~-------~~~L 164 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT-------IPLL 164 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CC-------HHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCC------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHH-------HHHH
Confidence 4578888899999999999875431 2345667777777776444333444444433222222 2223
Q ss_pred HHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHh
Q 003214 587 AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM 665 (838)
Q Consensus 587 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~ 665 (838)
.. .++ |+ + ...+.....++..+ +... +..+|.+...++.+..+....+...+..+
T Consensus 165 ~~----~l~----d~----~-~~vr~~a~~aL~~~----~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 165 IN----LLK----DP----N-GDVRNWAAFAININ----KYDN-------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HH----HHT----CS----S-HHHHHHHHHHHHHH----TCCC-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HH----HHc----CC----C-HHHHHHHHHHHHhh----ccCc-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 22 222 21 1 23455555555443 2111 34556666666655555666666655544
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.33 E-value=0.21 Score=45.24 Aligned_cols=164 Identities=10% Similarity=0.236 Sum_probs=102.5
Q ss_pred ccCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003214 382 DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (838)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l 461 (838)
|.|+++.-|..++.++.+.++. ...++..-+.-++... +..-.....-.++|.++..-.+ ....+.++
T Consensus 44 DlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ks-------EaIpltqeIa~a~G~la~i~Pe---~v~~vVp~- 111 (253)
T 2db0_A 44 DLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKS-------EAIPLTQEIAKAFGQMAKEKPE---LVKSMIPV- 111 (253)
T ss_dssp SCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHC-------CSHHHHHHHHHHHHHHHHHCHH---HHHHHHHH-
T ss_pred HHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhc-------ccCchHHHHHHHHhHHHHhCHH---HHHhhHHH-
Confidence 5699999999999999999865 4555555444455441 2344445556688888764222 11122222
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
+...+.-..|-.|-...+++++.... +|+....++.-+...+.+++-.=|+.|..-+..+-++ ...++.||+
T Consensus 112 ---lfanyrigd~kikIn~~yaLeeIara---nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv~PfL 183 (253)
T 2db0_A 112 ---LFANYRIGDEKTKINVSYALEEIAKA---NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNPFL 183 (253)
T ss_dssp ---HHHHSCCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHHGGGH
T ss_pred ---HHHHHhcCCccceecHHHHHHHHHHh---ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--CccccCcch
Confidence 22233446788898999999998763 6788999999999999988744444443333322222 467778887
Q ss_pred HHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 003214 542 PQLLDEFFKLMNEVENEDLVFTLETIVD 569 (838)
Q Consensus 542 ~~il~~L~~ll~~~~~~~l~~~l~~iv~ 569 (838)
|.++ .++.+-+.-.-.++.++++.
T Consensus 184 prL~----aLL~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 184 PRII----NLLHDGDEIVRASAVEALVH 207 (253)
T ss_dssp HHHH----GGGGCSSHHHHHHHHHHHHH
T ss_pred HHHH----HHHcCcchhhhHHHHHHHHH
Confidence 7654 56665332223455666554
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.28 E-value=0.034 Score=53.63 Aligned_cols=107 Identities=22% Similarity=0.369 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
...|..|...|..+. ....++.++. .+.. +++..+..++.++|.+... . .+ +.+..
T Consensus 33 ~~vR~~A~~~L~~~~---~~~~~~~L~~----~l~~--------~~~~vr~~a~~aL~~~~~~-----~---~~-~~L~~ 88 (211)
T 3ltm_A 33 YYVRRAAAYALGKIG---DERAVEPLIK----ALKD--------EDAWVRRAAADALGQIGDE-----R---AV-EPLIK 88 (211)
T ss_dssp HHHHHHHHHHHHHHC---CGGGHHHHHH----HTTC--------SCHHHHHHHHHHHHHHCCG-----G---GH-HHHHH
T ss_pred HHHHHHHHHHHHHhC---CccHHHHHHH----HHcC--------CCHHHHHHHHHHHHhhCCH-----H---HH-HHHHH
Confidence 446776766655442 2345544443 4432 3788999999999876531 1 12 22222
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~ 527 (838)
.+.++++.+|..|++.+|++.. + ..++.++..+.|++..||..|+.+|..+
T Consensus 89 ----~l~~~~~~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 89 ----ALKDEDGWVRQSAAVALGQIGD-----E----RAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp ----HTTCSSHHHHHHHHHHHHHHCC-----G----GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHcCCCHHHHHHHHHHHHHhCc-----H----HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3477889999999999998753 2 2356667778899999999999999987
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.65 E-value=1.2 Score=48.54 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=73.7
Q ss_pred chhhHhHHHHHHHHHHHHhhcCCcchHHHH--HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHH-----HH
Q 003214 429 PYRQKDGALLAIGALCDKLKQTEPYKSELE--RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KA 501 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~--~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~-----~~ 501 (838)
++..++.+..+++.++.. ..+.+..+. ..+ ..++..|.++++-++..|+|++..++.. +++... ..
T Consensus 15 ~~~~q~~A~~~L~~l~~~---~~~~~~~i~~~g~i-~~Lv~lL~s~~~~~~~~A~~aL~nLa~~---~~~~k~~i~~~G~ 87 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGI-CKLVDLLRSPNQNVQQAAAGALRNLVFR---STTNKLETRRQNG 87 (457)
T ss_dssp CTHHHHHHHHHHHHHTSS---CSSHHHHHHHTTHH-HHHHHHTTSSCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCH-HHHHHHHcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCC
Confidence 567778888888877642 111111110 001 1122345678889999999999998752 333323 34
Q ss_pred HHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003214 502 LHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (838)
Q Consensus 502 ~~~l~~~l~-~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (838)
++.++..|. +.+..++..|+.||.++......+..+. ...+..|+.++
T Consensus 88 i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~---~g~i~~Lv~ll 136 (457)
T 1xm9_A 88 IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI---ADALPVLADRV 136 (457)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH---hccHHHHHHHH
Confidence 778899998 6778899999999999997743333332 26777777777
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.44 E-value=0.57 Score=51.15 Aligned_cols=153 Identities=9% Similarity=0.081 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhccc---chH-HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc-ch--HHHH
Q 003214 386 PRTASMDFVSELVRKRGK---ENL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP-YK--SELE 458 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~---~~~-~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~-~~--~~~~ 458 (838)
.+..|...|..++...+. .+. .-.++.+.+.+.+ ++...++.+..+++.++..-.+... +. .-++
T Consensus 18 ~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 18 YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--------PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 566677777777643221 111 0122333345542 3567788999999988853111000 00 0111
Q ss_pred HHHhhccccccc-CCCcchhhHHHHHHHhhhccccCCh-hHHHHHHHHHHhcC--------CCC--------CCchHHHH
Q 003214 459 RMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGL--------RDP--------ELPVRVDS 520 (838)
Q Consensus 459 ~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~-~~~~~~~~~l~~~l--------~~~--------~~~V~~~A 520 (838)
. | +..|. ++++-++..|+|+++..+... ... ......++.++..| .++ +..|...|
T Consensus 90 ~-L----v~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 90 E-A----VSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp H-H----HHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred H-H----HHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 2 1 22345 567889999999999998642 222 23347888888888 222 23355599
Q ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHHhh
Q 003214 521 VFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 553 (838)
Q Consensus 521 ~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 553 (838)
+.||.+++...+....+... +.++..|..+++
T Consensus 164 ~~aL~nLs~~~~~~~~i~~~-~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 164 TGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHc-CCCHHHHHHHHH
Confidence 99999998763222223210 244555555554
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.23 Score=44.97 Aligned_cols=164 Identities=14% Similarity=0.218 Sum_probs=110.1
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHH
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 506 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~ 506 (838)
+-|..+--++..+..++....+ -.++++.. ++-.+. +...-+.......+|+.+.. +|+....+++.++
T Consensus 44 DlwtV~kNAl~vi~~i~~~~~e------l~epl~~k-L~vm~~ksEaIpltqeIa~a~G~la~i---~Pe~v~~vVp~lf 113 (253)
T 2db0_A 44 DLWTVVKNAISIIMVIAKTRED------LYEPMLKK-LFSLLKKSEAIPLTQEIAKAFGQMAKE---KPELVKSMIPVLF 113 (253)
T ss_dssp SCHHHHHHHHHHHHHHHTTCGG------GHHHHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhHH------HHHHHHHH-HHHHHhhcccCchHHHHHHHHhHHHHh---CHHHHHhhHHHHH
Confidence 4698888888888887765333 34555544 222333 44444656677788888875 5788899999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccchhhHHHHH
Q 003214 507 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLC 583 (838)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~ 583 (838)
....-.++..|+--+.+|..+..... + .++.+...++.++...+..+ .+..++++.++--..++||.+.+.
T Consensus 114 anyrigd~kikIn~~yaLeeIaranP--~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~ 187 (253)
T 2db0_A 114 ANYRIGDEKTKINVSYALEEIAKANP--M----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRII 187 (253)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHHHCH--H----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH
T ss_pred HHHhcCCccceecHHHHHHHHHHhCh--H----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHH
Confidence 98876677899999999999987752 2 45667777778887555444 344444444444455888888776
Q ss_pred HHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHh
Q 003214 584 QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILES 624 (838)
Q Consensus 584 ~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~ 624 (838)
.-|- ++ ..+.+.+..+++..+...
T Consensus 188 aLL~----------D~-------deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 188 NLLH----------DG-------DEIVRASAVEALVHLATL 211 (253)
T ss_dssp GGGG----------CS-------SHHHHHHHHHHHHHHHTS
T ss_pred HHHc----------Cc-------chhhhHHHHHHHHHHHHc
Confidence 4322 11 257888889988887653
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.16 E-value=0.032 Score=49.06 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=56.7
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
++|..|..+..++|.+... ..++. |. ..+.++++.+|..|+|.+|++.. ...++.+..
T Consensus 54 ~~~~vR~~A~~aL~~~~~~--------~a~~~-L~----~~L~d~~~~VR~~A~~aL~~~~~---------~~a~~~L~~ 111 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDE--------RAVEP-LI----KLLEDDSGFVRSGAARSLEQIGG---------ERVRAAMEK 111 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSH--------HHHHH-HH----HHHHHCCTHHHHHHHHHHHHHCS---------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCH--------HHHHH-HH----HHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHH
Confidence 4789999999999876531 11222 22 23457889999999999998752 235667777
Q ss_pred cCCCCCCchHHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRS 526 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~ 526 (838)
.++|++..||..|+.||..
T Consensus 112 ~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 112 LAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HTTSCCTHHHHHHHHHGGG
T ss_pred HHhCCCHHHHHHHHHHHHh
Confidence 8888899999999999864
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.12 E-value=3.3 Score=48.91 Aligned_cols=212 Identities=15% Similarity=0.218 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003214 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (838)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~ 463 (838)
..+|.+|.....+++...+...+..++..+...+.. ...|+.|.++|.+++.+++...+ ++.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~kw~~k~~~l~~~~~~~~~~~~------~~~----- 170 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-------TNKWQEKIAILAAFSAMVDAAKD------QVA----- 170 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHSHH------HHH-----
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHHHHHHhHH------HHH-----
Confidence 358999999999999998876667777777777753 13799999999999988763210 110
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
..++.+++.+..+|.|..+-|+.+|..++..+|.-.. ..++.|++|.
T Consensus 171 --------------------------------~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d~~~~~~~ 217 (986)
T 2iw3_A 171 --------------------------------LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKDIERFIPS 217 (986)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTTTGGGHHH
T ss_pred --------------------------------HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-CcchhhhHHH
Confidence 1357778888888998888899999999999998764 7889999999
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 003214 544 LLDEFFKLMNEVENEDLVFTLETIVD-KFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (838)
Q Consensus 544 il~~L~~ll~~~~~~~l~~~l~~iv~-~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~ 622 (838)
+++.+. + .+++..++..+.. .|-.+++.=... .+++.+.+-+.. . ..+.-+ ...-.+.++.
T Consensus 218 ~~~~~~----~--p~~~~~~~~~l~~~tfv~~v~~~~l~---~~~p~l~r~l~~----~----~~~~~r-~~~~~~~n~~ 279 (986)
T 2iw3_A 218 LIQCIA----D--PTEVPETVHLLGATTFVAEVTPATLS---IMVPLLSRGLNE----R----ETGIKR-KSAVIIDNMC 279 (986)
T ss_dssp HHHHHH----C--TTHHHHHHHHHTTCCCCSCCCHHHHH---HHHHHHHHHHTS----S----SHHHHH-HHHHHHHHHH
T ss_pred HHHHhc----C--hhhhHHHHHHhhcCeeEeeecchhHH---HHHHHHHhhhcc----C----cchhhe-eeEEEEcchh
Confidence 887543 2 2456667666644 455555532222 333322332321 1 112212 2222233333
Q ss_pred HhhcCChHHHHHHHhhHHHHHHHHhccCh----hhHHHHHHHHHHHh
Q 003214 623 ESVSRLPHLFVQIEPTLLPIMRRMLTTDG----QEVFEEVLEIVSYM 665 (838)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~p~i~~~l~~~~----~~~~~~~l~ll~~~ 665 (838)
+-+ ++|.....+.+.++|-+..+.+.-. -++...++..+...
T Consensus 280 ~lv-~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 280 KLV-EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp TTC-CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhc-CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 333 4677777888999999998876532 24555555555444
No 80
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.80 E-value=0.72 Score=51.41 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=110.7
Q ss_pred chhhHhHHHHHHHHHHHHh-hcCCc-ch--HHHHHHHhhcccccccC-CCcchhhHHHHHHHhhhccccCChhHHHHHHH
Q 003214 429 PYRQKDGALLAIGALCDKL-KQTEP-YK--SELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALH 503 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l-~~~~~-~~--~~~~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~ 503 (838)
+...++.|..+++.++.+- .+... +. .-++.+ .. .|.+ +++-++..|++++..++...-.........++
T Consensus 103 ~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~L-V~----LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp 177 (584)
T 3l6x_A 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL-VR----LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALH 177 (584)
T ss_dssp SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHH-HH----HHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHH-HH----HHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHH
Confidence 6788999999999998631 11000 00 012221 12 2343 45667888777777766532101123344566
Q ss_pred HHHhcC-----------------C-CCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhh------chh
Q 003214 504 SVVSGL-----------------R-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEV------ENE 558 (838)
Q Consensus 504 ~l~~~l-----------------~-~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~------~~~ 558 (838)
.++..+ . ..+..|+..|+.+|.++..... .+..+.. .+.+++.|+.+++.. +..
T Consensus 178 ~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~ 256 (584)
T 3l6x_A 178 ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSK 256 (584)
T ss_dssp HHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCH
T ss_pred HHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHH
Confidence 666654 1 1245789999999999986532 1233322 123455555655532 111
Q ss_pred ---hHHHHHHHHHHhhcccch---hh-----------------------HHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 003214 559 ---DLVFTLETIVDKFGEEMA---PY-----------------------ALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (838)
Q Consensus 559 ---~l~~~l~~iv~~~~~~i~---p~-----------------------~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (838)
....+|..+......++. .| -+..+..|+ .++....+ + .
T Consensus 257 ~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll----~LL~~s~~-~-------~ 324 (584)
T 3l6x_A 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI----SLLKESKT-P-------A 324 (584)
T ss_dssp HHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH----HHHHHCCC-H-------H
T ss_pred HHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH----HHHccCCC-H-------H
Confidence 234444444433221110 01 012233333 34432211 1 1
Q ss_pred HHHHHHHHHHHHHHhhcCCh--HHHH-HH-HhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q 003214 610 AAVGCLRAISTILESVSRLP--HLFV-QI-EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 610 ~~~~~l~~i~~i~~~~~~~~--~~~~-~l-~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~ 669 (838)
.......++..+.. +..+ .... .+ +...+|.+...+.....+....+...+.++....
T Consensus 325 v~E~Aa~AL~nL~a--g~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 325 ILEASAGAIQNLCA--GRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHS--SCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHc--CCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 12223333434332 1111 1111 12 2466999999998888899999999999998643
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.58 E-value=0.68 Score=50.15 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=98.6
Q ss_pred CcchhhHHHHHHHhhhccccCChhHH---HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cccccccchHHHHHH
Q 003214 473 VGHLRAKAAWVAGQYAHINFSDQNNF---RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDE 547 (838)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~--~~~~l~p~l~~il~~ 547 (838)
++-++..|+|+++..+.-.-.....+ ..+++.++..|.+++..|+..|+.||.++..... .+..+.. ...+..
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~~ 290 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHHH
Confidence 46789999999999874220011122 3458999999998888899999999999875311 1222221 134556
Q ss_pred HHHHhhhhchhh----HHHHHHHHHHhhcccchhhH---HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHH
Q 003214 548 FFKLMNEVENED----LVFTLETIVDKFGEEMAPYA---LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (838)
Q Consensus 548 L~~ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~---~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (838)
|+.++....... ...+|..+.....+ ..+-. ...++.|+ +++....+.+ .-.. .....-++..
T Consensus 291 LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~-nk~~I~~~~Gal~~Lv----~LL~~~~~~~----~~~v-~~~A~~aL~n 360 (458)
T 3nmz_A 291 LMECALEVKKESTLKSVLSALWNLSAHCTE-NKADICAVDGALAFLV----GTLTYRSQTN----TLAI-IESGGGILRN 360 (458)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHSTTHHHHHH----HHTTCCCSSS----TTHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHhcCcHHHHH----HHhcCCCCcc----hHHH-HHHHHHHHHH
Confidence 666543322222 34455555442211 11111 11233333 3444322110 0011 1122333334
Q ss_pred HHHhhcCChHHHHH-HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhh
Q 003214 621 ILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 667 (838)
Q Consensus 621 i~~~~~~~~~~~~~-l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~ 667 (838)
+...+..+++.... .+.-.+|.+-..+.....+..+++...+.++..
T Consensus 361 Ls~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 33322123332222 235578888888887777888999988888874
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.66 Score=46.70 Aligned_cols=179 Identities=11% Similarity=0.103 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHHhhcccchH--------HHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcch
Q 003214 383 LYSPRTASMDFVSELVRKRGKENL--------QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 454 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~~--------~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~ 454 (838)
.|..|..|.+-+..+....+.... ..+...+...+. ..|....+.++-++..++..+.......
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~--------DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT--------DSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT--------CSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc--------cchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 477899888777776654322111 011112222332 2477888999999988877553221111
Q ss_pred ----HHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 455 ----SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 455 ----~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
..+..++...+-..+.++.+.+|..|.-++-.+.+... . ...+++.++..+++.++.|+..++..|..++..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-S---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-S---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-c---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 11222222111123456677888888888877765331 1 245677888889988999999999999999988
Q ss_pred cc-cccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcc
Q 003214 531 CR-DLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGE 573 (838)
Q Consensus 531 ~~-~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~ 573 (838)
.. ..-...+.++.++..+..++++.+.+. ...++..+...+|+
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 64 122345677888888888888766543 33344444444443
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.55 E-value=0.11 Score=45.60 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=55.1
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
+++..|..++.++|.+.+ . .++. |. ..+.++++.+|..|+|.+|++.. ...++.+..
T Consensus 24 ~~~~vR~~A~~~L~~~~~----~-----~~~~-L~----~~L~d~~~~vR~~A~~aL~~~~~---------~~a~~~L~~ 80 (131)
T 1te4_A 24 ENKWVRRDVSTALSRMGD----E-----AFEP-LL----ESLSNEDWRIRGAAAWIIGNFQD---------ERAVEPLIK 80 (131)
T ss_dssp SCCCSSSSCCSSTTSCSS----T-----THHH-HH----HGGGCSCHHHHHHHHHHHGGGCS---------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc----h-----HHHH-HH----HHHcCCCHHHHHHHHHHHHhcCC---------HHHHHHHHH
Confidence 367777777777774422 1 1222 22 34567899999999999998753 234566666
Q ss_pred cCCCCCCchHHHHHHHHHHHH
Q 003214 508 GLRDPELPVRVDSVFALRSFV 528 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~ 528 (838)
.++|++..||..|+.+|..+-
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhC
Confidence 677889999999999999863
No 84
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.84 E-value=1.4 Score=47.63 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=133.8
Q ss_pred ccCCHHHHHHHHHHHHHhhccc----------chHHHHHH-HHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcC
Q 003214 382 DLYSPRTASMDFVSELVRKRGK----------ENLQKFIQ-FIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT 450 (838)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~----------~~~~~il~-~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~ 450 (838)
..|..|..|+--|..+.+..|. +..-.++- +....+..|.++. .-.-.||+|-.++|++ ..+.+.
T Consensus 186 p~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDq---VVAPVRETaAQtLGaL-~hLp~e 261 (800)
T 3oc3_A 186 YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDR---TVAPVRDAAAYLLSRI-YPLIGP 261 (800)
T ss_dssp SSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSS---CBCHHHHHHHHHHHHH-TTTSCS
T ss_pred cchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCe---eeeehHHHHHHHHHHH-HhCChh
Confidence 3477899998888888887652 11111111 2233344443322 2467899999999998 666554
Q ss_pred CcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 451 EPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 451 ~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
+ .-+..++. .+..+.--+|-.++..+..+.+... + +..+++.++.+|+|.|-=||..||.+|.-++ .
T Consensus 262 --~-~IL~qLV~-----~l~~~~WEVRHGGLLGLKYL~DLL~---~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~ 328 (800)
T 3oc3_A 262 --N-DIIEQLVG-----FLDSGDWQVQFSGLIALGYLKEFVE---D-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I 328 (800)
T ss_dssp --C-CHHHHHTT-----GGGCSCHHHHHHHHHHHHHTGGGCC---C-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C
T ss_pred --H-HHHHHHHh-----hcCCCCeeehhhhHHHHHHHHHHHH---H-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c
Confidence 2 12333331 2344445677778877776644332 1 7999999999999988789999999998877 1
Q ss_pred cccccccccchHHHHHHHHHHhhhhch-----hhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 003214 531 CRDLNEIRPILPQLLDEFFKLMNEVEN-----EDLVFTLETIVDKFGE-EMAPYALGLCQNLAAAFWRCMNTAEADEDAD 604 (838)
Q Consensus 531 ~~~~~~l~p~l~~il~~L~~ll~~~~~-----~~l~~~l~~iv~~~~~-~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~ 604 (838)
+ ..++.+++.+-.++.+.+. ..++..|..++..=.. ...| .+++.|.+ | ....
T Consensus 329 ---p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp---~LVPRL~P-F---LRHt------- 387 (800)
T 3oc3_A 329 ---T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPP---ERLKDIFP-C---FTSP------- 387 (800)
T ss_dssp ---S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCS---GGGGGTGG-G---GTCS-------
T ss_pred ---h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccCh---HHHHHHHh-h---hcCC-------
Confidence 2 3466677777666665421 2356666666553211 1112 33433432 1 1111
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHH
Q 003214 605 DPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (838)
Q Consensus 605 ~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~ 663 (838)
.+-.+.++++++.+++ +. ..+-=+++.++-....+..+-++++|.
T Consensus 388 --ITSVR~AVL~TL~tfL-----~~-------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 388 --VPEVRTSILNMVKNLS-----EE-------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp --SHHHHHHHHHHTTTCC-----CH-------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHH-----hh-------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1234556666666555 11 222233444454566777888888885
No 85
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.27 E-value=5.1 Score=40.39 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=80.7
Q ss_pred cchHHHHHHHHH----HhhhhchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHH
Q 003214 539 PILPQLLDEFFK----LMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (838)
Q Consensus 539 p~l~~il~~L~~----ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (838)
.++|++++..+. ....+...+++.++.+++.++++.+.|+.+.+...+..+-+..++..- ++.+--+...
T Consensus 69 ~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df------~eyPehR~~F 142 (321)
T 1w9c_A 69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDF------EEYPEHRTNF 142 (321)
T ss_dssp HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTT------TCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccc------ccChHHHHHH
Confidence 345555554333 223333446999999999999999999999999999988777665322 1334456677
Q ss_pred HHHHHHHHHhhcC-----ChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q 003214 615 LRAISTILESVSR-----LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 615 l~~i~~i~~~~~~-----~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~ 669 (838)
+..+..+...+-. .++.+ ..++.-+--.+.+..-+..+.|+.++..++.+.
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~f----klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQF----KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHH----HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 8777777765421 12222 334444445566677788999999888887654
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=91.21 E-value=17 Score=40.33 Aligned_cols=329 Identities=12% Similarity=0.106 Sum_probs=159.3
Q ss_pred cccCCCcchhhHHHHHHHhhhccccC-ChhHH---HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 003214 468 EFSSPVGHLRAKAAWVAGQYAHINFS-DQNNF---RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (838)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~~~~-~~~~~---~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (838)
.|...+..+|.-++.++......... .++.. +.-++.++..|.|+..++|-.|...|..+......-+.+. -.+.
T Consensus 130 lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklV-AFEn 208 (651)
T 3grl_A 130 LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIV-AFEN 208 (651)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTT
T ss_pred HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhc
Confidence 45677889999999999888653211 11211 2467788999999888999999999999988753122222 1235
Q ss_pred HHHHHHHHhhhhch-------hhHHHHHHHHHHhhcccchhhHHH--HHHHHHHHHHHHHhcccCCCCCC--ChhHHHHH
Q 003214 544 LLDEFFKLMNEVEN-------EDLVFTLETIVDKFGEEMAPYALG--LCQNLAAAFWRCMNTAEADEDAD--DPGALAAV 612 (838)
Q Consensus 544 il~~L~~ll~~~~~-------~~l~~~l~~iv~~~~~~i~p~~~~--l~~~L~~~~~~~~~~~~~d~~~~--~~~~~~~~ 612 (838)
.++.|+.++..-.. ++.+.+|..+... ...-..|..+ .++.|.. +.+. +++... +.+..-..
T Consensus 209 aFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~~L~~----LL~~--~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 209 AFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQRMKP----WFEV--GDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGGGGGG----GGCC--CSCSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHH----HhCC--CccccccHHHHHHHHH
Confidence 67777788765322 1122333333321 0000001111 1112221 1111 111001 11211223
Q ss_pred HHHHHHHHHHHhhcC---ChHHHHHH--HhhHHHHHHHHhccCh-hhHHHHHHHHHHHhhhcCCC------------C--
Q 003214 613 GCLRAISTILESVSR---LPHLFVQI--EPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFSPT------------I-- 672 (838)
Q Consensus 613 ~~l~~i~~i~~~~~~---~~~~~~~l--~~~~~p~i~~~l~~~~-~~~~~~~l~ll~~~~~~~~~------------~-- 672 (838)
+.+++|..++..-+. .+..-..+ ...+.++++..+.+.. .....+++..+..+++..+. .
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence 455555555543221 11111111 1234455555554332 45667777777777764321 0
Q ss_pred CHhhhHhHHHHHHHHhh-hHhhhhhhhhhhhhhhhccCcc-------cccccC-----C-chHHHHHHHHHHHHhcCCCC
Q 003214 673 SLEMWSLWPLMMEALAD-WAIDFFPNILVPLDNYISRGTA-------HFLTCK-----E-PDYQQSLWSMVSSIMADKNL 738 (838)
Q Consensus 673 ~~~l~~l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~-------~~l~~~-----~-~~~~~~l~~~~~~~l~~~~~ 738 (838)
.|.+..+ ++..+.+ ..++..-+...++.+|+....+ .++... + .+.++.+ +..+.. .
T Consensus 362 ~p~li~l---L~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll---~~~l~s-~-- 432 (651)
T 3grl_A 362 RPAIVVL---LMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLL---CGGLFS-T-- 432 (651)
T ss_dssp EEHHHHH---HHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHH---HHHHTS-S--
T ss_pred cChHHHH---HHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhh---hhhhcc-C--
Confidence 1112121 2222221 2344445667777777766542 111100 0 0122222 222221 1
Q ss_pred CCCccCchhHHHHHHHHHcc------------cCcccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccChHHHHHH
Q 003214 739 EDGDIEPAPKLIEVVFQNCK------------GQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSI 806 (838)
Q Consensus 739 ~~~~~~~~~~ll~~i~~~~~------------~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~ 806 (838)
+.....+++.++..++..-+ ...+.-....++.+...|.....+.+++.++.+++.-++.+|..+=.+
T Consensus 433 d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dF 512 (651)
T 3grl_A 433 DSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHF 512 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHH
Confidence 21222344444444443211 111111123455555555544556788889999999999999999999
Q ss_pred HHhcCch
Q 003214 807 LHKLGVA 813 (838)
Q Consensus 807 L~~~~~~ 813 (838)
|.+-+-+
T Consensus 513 L~~~s~l 519 (651)
T 3grl_A 513 LHNSANV 519 (651)
T ss_dssp HHSTTHH
T ss_pred HcCCchH
Confidence 9887544
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.96 E-value=0.4 Score=49.73 Aligned_cols=134 Identities=9% Similarity=0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhh
Q 003214 408 KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 487 (838)
Q Consensus 408 ~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 487 (838)
.++--+...+++ ++...|--+|..+...+.. ..+. + +..+.+..++++++|++|+-|+.++++.
T Consensus 68 ~lf~~v~kl~~s--------~d~~lKrLvYLyl~~~~~~---~~e~---i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I 131 (355)
T 3tjz_B 68 EAFFAMTKLFQS--------NDPTLRRMCYLTIKEMSCI---AEDV---I--IVTSSLTKDMTGKEDSYRGPAVRALCQI 131 (355)
T ss_dssp HHHHHHHGGGGC--------CCHHHHHHHHHHHHHHTTT---SSCG---G--GGHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------CCHHHHHHHHHHHHHhCCC---HHHH---H--HHHHHHHhhcCCCcHhHHHHHHHHHhcC
Confidence 444444556654 4788888888888776654 1111 1 2344455577899999999999999886
Q ss_pred hccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHH
Q 003214 488 AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 567 (838)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~i 567 (838)
. +++..+.+.+.+-++|.|.++-||-.|+-|...++... ++.+..+ ++.+-.++.+.+.-....++..+
T Consensus 132 ~-----~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v~~~----~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 132 T-----DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVVKRW----VNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp C-----CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHHHTT----HHHHHHHTTCSSHHHHHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHHHHH----HHHHHHHhcCCCccHHHHHHHHH
Confidence 5 34678889999999999999999999999988887764 3444433 33344444432222233444444
Q ss_pred H
Q 003214 568 V 568 (838)
Q Consensus 568 v 568 (838)
.
T Consensus 201 ~ 201 (355)
T 3tjz_B 201 Y 201 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.82 E-value=38 Score=41.70 Aligned_cols=124 Identities=9% Similarity=0.020 Sum_probs=69.3
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhh------------hHhhhhhhhhhhhhhhhccCcccccccC
Q 003214 650 DGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALAD------------WAIDFFPNILVPLDNYISRGTAHFLTCK 717 (838)
Q Consensus 650 ~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~------------~~~~~l~~~~~~L~~~i~~~~~~~l~~~ 717 (838)
+........+.+|..+......-++.+..++..++..+.+ ...+....+...+..+....++.+.
T Consensus 544 ~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~--- 620 (1204)
T 3a6p_A 544 KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL--- 620 (1204)
T ss_dssp SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG---
T ss_pred CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH---
Confidence 3445677888888777665433233344555555544432 1223445566667777777777777
Q ss_pred CchHHHHHHHHHHHHhcCCC-CCCCccCchhHHHHHHHHHcccC--cccchHHHHHHHHHHHhh
Q 003214 718 EPDYQQSLWSMVSSIMADKN-LEDGDIEPAPKLIEVVFQNCKGQ--VDHWVEPYLRITVERLRR 778 (838)
Q Consensus 718 ~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~ll~~i~~~~~~~--~~~~l~~il~~~l~~l~~ 778 (838)
+|.+.+...+..++.... ....+.......+..+....+.. ...+++.++.-+++++.+
T Consensus 621 --p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 621 --PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp --GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 788989888888886544 44433333334333332222321 234466666666665554
No 89
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.72 E-value=5.9 Score=45.29 Aligned_cols=255 Identities=14% Similarity=0.119 Sum_probs=135.6
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCCh-hH-HHHHHHHHHhcCCCCCC---chHHHHHHHHHHHHHhcccccccccc-hH
Q 003214 469 FSSPVGHLRAKAAWVAGQYAHINFSDQ-NN-FRKALHSVVSGLRDPEL---PVRVDSVFALRSFVEACRDLNEIRPI-LP 542 (838)
Q Consensus 469 l~~~~~~lr~ra~~~l~~~~~~~~~~~-~~-~~~~~~~l~~~l~~~~~---~V~~~A~~al~~~~~~~~~~~~l~p~-l~ 542 (838)
+.++++-+|..|+|+++.++.-. ++- .. -...++.++..+.+... .+|..|+.||.++.-..+..-.|..+ ..
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred HcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 45678889999999999997521 111 11 24567788888875432 38999999999998654311122111 12
Q ss_pred HHHHHHHHHhhh-hchh----------------hHHHHHHHHHHhhc---ccchhhHHHHHH--HHHHHHHHHHhcccCC
Q 003214 543 QLLDEFFKLMNE-VENE----------------DLVFTLETIVDKFG---EEMAPYALGLCQ--NLAAAFWRCMNTAEAD 600 (838)
Q Consensus 543 ~il~~L~~ll~~-~~~~----------------~l~~~l~~iv~~~~---~~i~p~~~~l~~--~L~~~~~~~~~~~~~d 600 (838)
..+..|+.++.. .+.+ +.+.+|..+...=+ +++. ..++. ...+.+.+++.+ +
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r---~~Ii~~~ga~~~L~~LL~s--~- 618 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC---KHIVSTKVYWSTIENLMLD--E- 618 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH---HHHHHSHHHHHHHHHGGGC--S-
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH---HHHHHhcCHHHHHHHHHhC--C-
Confidence 677777788762 2211 12334444443211 1222 12232 122223333332 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhcCC-hHHHHHHH-hh---HHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHh
Q 003214 601 EDADDPGALAAVGCLRAISTILESVSRL-PHLFVQIE-PT---LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLE 675 (838)
Q Consensus 601 ~~~~~~~~~~~~~~l~~i~~i~~~~~~~-~~~~~~l~-~~---~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~ 675 (838)
+...+-...+++..++..-..- ...+. .+ +. -++++-..++.++.+....+...+..+....+.+...
T Consensus 619 ------n~~VrrAA~elI~NL~~~~e~i~~k~~~-~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 619 ------NVPLQRSTLELISNMMSHPLTIAAKFFN-LENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp ------SHHHHHHHHHHHHHHHTSGGGTGGGTSC-CSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHhCCcHHHHHHHHh-hcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 2345667788888887632210 01110 00 11 2566767777777788888877777775332222222
Q ss_pred h---hHhHHHHHHHHhh--hHhhhhhhhhhhhhhhhccCcccccccCCchHH--HHHHHHHHHHhcCCC
Q 003214 676 M---WSLWPLMMEALAD--WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ--QSLWSMVSSIMADKN 737 (838)
Q Consensus 676 l---~~l~~~l~~~~~~--~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~--~~l~~~~~~~l~~~~ 737 (838)
+ ...++.+++++.+ .+.+.......++.|.+.+.++..-+..-..+. +.+.+.+.+.+..+.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 2 2455666777665 456666777888888876544322211001121 344566667776543
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.99 E-value=10 Score=36.12 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc-ccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcc-cch
Q 003214 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI-RPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE-EMA 576 (838)
Q Consensus 499 ~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l-~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~-~i~ 576 (838)
...+..+.+.++|.|..|+.-|..+|..++...+ ... ...+..+++.+.+++.+.+......++.++-.-..+ .+.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~--~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRAD--SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 4578888999999999999999999999998842 222 235677777777888765444445555444333322 233
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHH
Q 003214 577 PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656 (838)
Q Consensus 577 p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~ 656 (838)
| +-...+...+..+..+. + .+...+..+.++.+ ..... ...+...+...+.....+.-.
T Consensus 110 ~---~~y~Kl~~aL~dlik~~--~-------~il~~eaae~Lgkl-kv~~~--------~~~V~~~l~sLl~Skd~~vK~ 168 (265)
T 3b2a_A 110 S---KTFLKAAKTLVSLLESP--D-------DMMRIETIDVLSKL-QPLED--------SKLVRTYINELVVSPDLYTKV 168 (265)
T ss_dssp H---HHHHHHHHHHHHHTTSC--C-------HHHHHHHHHHHHHC-CBSCC--------CHHHHHHHHHHHTCSSHHHHH
T ss_pred H---HHHHHHHHHHHHHhcCC--C-------chHHHHHHHHhCcC-Ccccc--------hHHHHHHHHHHHhCCChhHHH
Confidence 3 33334444444455521 1 34455555655555 21111 144556666666566677778
Q ss_pred HHHHHHHHhhhcC
Q 003214 657 EVLEIVSYMTFFS 669 (838)
Q Consensus 657 ~~l~ll~~~~~~~ 669 (838)
-|+.++..+..++
T Consensus 169 agl~~L~eia~~S 181 (265)
T 3b2a_A 169 AGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHhhccc
Confidence 8888888887654
No 91
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=87.44 E-value=3.4 Score=39.47 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003214 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (838)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~ 462 (838)
.+++|..|..+|..+ . ....++.++...+.. .++|..+|.+-.+++-++...... .....+..|
T Consensus 84 ~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~-------D~~WrVre~lA~a~~~~~~~~~pe-~~l~~~~~W-- 147 (240)
T 3l9t_A 84 VYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSK-------DNNWRVQEVLAKAFDEFCKKIEYK-KALPIIDEW-- 147 (240)
T ss_dssp SHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGG-------CSCHHHHHHHHHHHHHHHHHHCTT-TTHHHHHHH--
T ss_pred chHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCC-------CCCccHHHHHHHHHHHHHHhcCHH-HHHHHHHHH--
Confidence 467899999877666 2 224566766664443 258999999988888666421111 112233333
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
..++++.+|+.|.-..--|+.. .........+++.+-.+..|++.-||-+-+.+|+.+....
T Consensus 148 ------~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 148 ------LKSSNLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------HHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------hcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 3578999999998877666643 1122345667888888888999889999999999876653
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=87.38 E-value=1.1 Score=46.48 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=68.7
Q ss_pred cchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 428 ~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
+|...|=.|+.++|.+.+. ++...+++.+. ..+.+.+|++|..|+.+..+... .+|+..+..++.+-.
T Consensus 116 ~N~~iR~lALRtL~~I~~~-----~m~~~l~~~lk----~~L~d~~pyVRk~A~l~~~kL~~---~~pe~v~~~~~~l~~ 183 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDS-----TMLQAIERYMK----QAIVDKVPSVSSSALVSSLHLLK---CSFDVVKRWVNEAQE 183 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCT-----TTHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHTT---TCHHHHHTTHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCCH-----HHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHH
Confidence 3678898999999988642 23334444444 45688999999999999887643 367777888888888
Q ss_pred cCCCCCCchHHHHHHHHHHHHHh
Q 003214 508 GLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
.+.|.++.|...|..++..+...
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCccHHHHHHHHHHHHHhh
Confidence 99999988988888888777654
No 93
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=87.37 E-value=18 Score=40.28 Aligned_cols=161 Identities=13% Similarity=0.118 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCc---
Q 003214 385 SPRTASMDFVSELVRKRG---------KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP--- 452 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~---------~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~--- 452 (838)
.++..|..+|..|+.... ...++.++.++...+... ..+-+..|-|+.++..+++.+....+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~------~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK------DSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT------CCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc------CccHHHHHHHHHHHHHhhccccccccchh
Confidence 356667777877764321 123345566555544321 12457888899999888877532110
Q ss_pred -chH---------------HHH-----HHHhhccccccc-CCCcchhhHHHHHHHhhhccccCCh-h---HH--HHHHHH
Q 003214 453 -YKS---------------ELE-----RMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQ-N---NF--RKALHS 504 (838)
Q Consensus 453 -~~~---------------~~~-----~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~-~---~~--~~~~~~ 504 (838)
+.. .++ ..+ ..++..++ +..+-++..|+|+++.++....... . .+ ...++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v-~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~ 359 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVV-RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHH-HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence 000 000 001 11222333 3467888999999998864221101 1 11 466899
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003214 505 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (838)
Q Consensus 505 l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (838)
++..|.+++..|+..|+.||.++......+..| -...+..|..++...
T Consensus 360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 360 IADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCC
Confidence 999999888899999999999999876534444 356778888888754
No 94
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=86.39 E-value=25 Score=40.74 Aligned_cols=111 Identities=10% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChh-HHHHHHHHHHhcCCC--CCCchHH-HHHHHHHHHHHhcccc
Q 003214 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN-NFRKALHSVVSGLRD--PELPVRV-DSVFALRSFVEACRDL 534 (838)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~--~~~~V~~-~A~~al~~~~~~~~~~ 534 (838)
..+.+.+...+.+.+.-+...+.-++..++...+.+++ .++.+++.+...|.. -..+=|+ +|..+|..++.-.-..
T Consensus 338 ~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~ 417 (799)
T 1vsy_4 338 EIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMD 417 (799)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 33333333334466777888888888888865422223 467777777777766 3223343 4556666665544334
Q ss_pred cccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHH
Q 003214 535 NEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVD 569 (838)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~ 569 (838)
...++++.+++..++.-+.--+..- .+..+..++.
T Consensus 418 ~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 418 KLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 4567888888887776665433322 3444455544
No 95
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=84.27 E-value=23 Score=38.14 Aligned_cols=217 Identities=11% Similarity=0.058 Sum_probs=118.5
Q ss_pred hhhHhHHHHHHHHHHHHhhcCCcchHHH---HHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH---H--HHH
Q 003214 430 YRQKDGALLAIGALCDKLKQTEPYKSEL---ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN---F--RKA 501 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~~~~~~~---~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~---~--~~~ 501 (838)
...++-+.++++.++..-.. .+..+ ...+ ..++..|.++++-++..|+|+++.++.. .+++. . ...
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~---~k~~i~~~~GaI-p~LV~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVA---NKATLCSMKGCM-RALVAQLKSESEDLQQVIASVLRNLSWR--ADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHH---HHHHHHHCHHHH-HHHHHGGGCSCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhCCCcc---cHHHHHHcCCcH-HHHHHHHhCCCHHHHHHHHHHHHHHhcC--CCHHHHHHHHHcCC
Confidence 44566777788877743111 11111 1212 2233355678889999999999998742 12221 1 245
Q ss_pred HHHHHhcC-CCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhch-------hhHHHHHHHHHHh--
Q 003214 502 LHSVVSGL-RDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVEN-------EDLVFTLETIVDK-- 570 (838)
Q Consensus 502 ~~~l~~~l-~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~-------~~l~~~l~~iv~~-- 570 (838)
++.++..| .+.+..++..|+.||.++...+. .+..+.- ....+..|..++..... +....+|..+...
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 77888864 55667789999999999987432 1222210 13456666677664322 1234555555432
Q ss_pred hcccchhhHH--HHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH-HHhhHHHHHHHHh
Q 003214 571 FGEEMAPYAL--GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRML 647 (838)
Q Consensus 571 ~~~~i~p~~~--~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~-l~~~~~p~i~~~l 647 (838)
..++....+. ..++.|+ +++.+. + .-.......++..+.. .+++.... .+.-.+|.+...+
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv----~LL~~~--~-------~~v~~~A~~aL~nLa~---~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLL----QHLKSH--S-------LTIVSNACGTLWNLSA---RNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHH----HHSSCS--C-------HHHHHHHHHHHHHHHS---SCHHHHHHHHHHTHHHHHHTTT
T ss_pred CCHHHHHHHHHcccHHHHH----HHHcCC--C-------hHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHH
Confidence 1222111111 1233333 344321 1 1122334444555432 23332222 3466788898888
Q ss_pred ccChhhHHHHHHHHHHHhhhcC
Q 003214 648 TTDGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 648 ~~~~~~~~~~~l~ll~~~~~~~ 669 (838)
........+.+...+.+++.+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCC
T ss_pred hCCCHHHHHHHHHHHHHHHcCC
Confidence 8777788899999999988654
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=82.75 E-value=11 Score=37.47 Aligned_cols=149 Identities=7% Similarity=0.095 Sum_probs=84.1
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcc----cccccccchHHHHHHHHHH-hhhhchhhHHHHHHHHHHhhcccchhhHHH
Q 003214 507 SGLRDPELPVRVDSVFALRSFVEACR----DLNEIRPILPQLLDEFFKL-MNEVENEDLVFTLETIVDKFGEEMAPYALG 581 (838)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~----~~~~l~p~l~~il~~L~~l-l~~~~~~~l~~~l~~iv~~~~~~i~p~~~~ 581 (838)
..+.|++..|...|+.++..++.... ......+++..++..|+.- +.+........+++.+...+.... | ...
T Consensus 62 k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~-~~~ 139 (278)
T 4ffb_C 62 QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-S-ITQ 139 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-S-SHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-c-HHH
Confidence 45678888899999999999988653 1223344555566655542 333222222233333333222111 1 112
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHH
Q 003214 582 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEI 661 (838)
Q Consensus 582 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~l 661 (838)
+...+.. .++ .. ++-.+.+++..+..++...+...-........+++.+..+++..+.+..+.+..+
T Consensus 140 ~~e~l~~----~l~--~K-------npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 140 SVELVIP----FFE--KK-------LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp HHHHHGG----GGG--CS-------CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHH----HHh--cc-------CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 2222221 111 11 2456778899999999887543211222335566777777877788899999999
Q ss_pred HHHhhhcCC
Q 003214 662 VSYMTFFSP 670 (838)
Q Consensus 662 l~~~~~~~~ 670 (838)
+..+.+..+
T Consensus 207 ~~~ly~~~G 215 (278)
T 4ffb_C 207 IVEIYKVTG 215 (278)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhC
Confidence 888876543
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.82 E-value=11 Score=44.14 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=61.1
Q ss_pred cCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 003214 470 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 549 (838)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~ 549 (838)
.+.+|.+|+.|++.+|..+-.. + ...++..+....+|++.-||..|+.||..+.-.. .+...|.+.+++..|.
T Consensus 622 ~~~d~~VR~gAalALGli~aGn---~--~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt--nna~~~rva~~l~~L~ 694 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGK---G--LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ--TEKLNPQVADINKNFL 694 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSS---C--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC--CTTTCTTHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCC---C--cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC--ccccchHHHHHHHHHH
Confidence 4567999999999999986432 1 1556666667778999899999999999987653 4666788999999888
Q ss_pred HHhhh
Q 003214 550 KLMNE 554 (838)
Q Consensus 550 ~ll~~ 554 (838)
....+
T Consensus 695 ~~~~d 699 (963)
T 4ady_A 695 SVITN 699 (963)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 88865
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=80.18 E-value=17 Score=35.68 Aligned_cols=140 Identities=10% Similarity=0.095 Sum_probs=84.3
Q ss_pred chhhHhHHHHHHHHHHHHhhcCC-cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003214 429 PYRQKDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (838)
Q Consensus 429 ~~~~~ea~l~~lg~i~~~l~~~~-~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (838)
|....-.++-++..+...+.+.. .+.+.-...+..+++--+.++..-+|..+--++-.+..+. + ...+++.+++
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~--~---~~~v~~~l~~ 174 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV--G---PLKMTPMLLD 174 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--C---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--C---HHHHHHHHHH
Confidence 56666777777777766665421 1221111222333433445666678888877776666532 3 2557788888
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccch
Q 003214 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMA 576 (838)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~ 576 (838)
.+.+.+..+|..++..+..+++.... . ...++ .+...+..++++.+... ...++..+....|+.+-
T Consensus 175 g~ksKN~R~R~e~l~~l~~li~~~G~-~-~~~~l-~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 175 ALKSKNARQRSECLLVIEYYITNAGI-S-PLKSL-SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHCS-G-GGGGG-CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHhcCC-C-ccccc-cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99888899999999999999998652 2 12222 00055667777665543 34444444445565543
No 99
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=79.16 E-value=6.7 Score=40.71 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=63.8
Q ss_pred hhhHhHHHHHHHHHHHHhhcCCcchHHHH--HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHH-----HHHH
Q 003214 430 YRQKDGALLAIGALCDKLKQTEPYKSELE--RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKAL 502 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~~~~~~~~--~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~-----~~~~ 502 (838)
+..++.+..++..++..+....+.+..+. ..+ ..++..|.+++.-++..|+|+++.++.. +++.. ..++
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i-~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~~~~i~~~G~i 307 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCL-QTLLQHLKSHSLTIVSNACGTLWNLSAR---NPKDQEALWDMGAV 307 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH-HHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCH-HHHHHHHcCCChHHHHHHHHHHHHHhCC---CHHHHHHHHHCCCH
Confidence 35677777888887753211111111000 011 1122245667778999999999998742 33222 3457
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 003214 503 HSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (838)
Q Consensus 503 ~~l~~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (838)
+.++..|.+.+..++..|+.||.+++....
T Consensus 308 ~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 889999998888899999999999998753
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=77.63 E-value=24 Score=39.26 Aligned_cols=100 Identities=8% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHh--hhHhHHHHHH
Q 003214 609 LAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLE--MWSLWPLMME 685 (838)
Q Consensus 609 ~~~~~~l~~i~~i~~~~~~-~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~--l~~l~~~l~~ 685 (838)
..+.+.+.+++.++..=.+ ..++.- -.+.-+|.+...|..+.+.+..+++.++..+++..+.+..- .-..|+.+++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il-~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIIL-VSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHH-HSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHH-hCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 3466778888888776322 111111 12467788888887777788899999999999766444332 2256888888
Q ss_pred HHhhhH----hhhhhhhhhhhhhhhccC
Q 003214 686 ALADWA----IDFFPNILVPLDNYISRG 709 (838)
Q Consensus 686 ~~~~~~----~~~l~~~~~~L~~~i~~~ 709 (838)
++...+ ....++++.++.+.+.+.
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 875432 245566666666655544
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.25 E-value=25 Score=34.45 Aligned_cols=165 Identities=10% Similarity=0.073 Sum_probs=89.4
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhcc---cchhh-HHHHH
Q 003214 511 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGE---EMAPY-ALGLC 583 (838)
Q Consensus 511 ~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~---~i~p~-~~~l~ 583 (838)
+.+..-+..|+..|...++.. ++.+...++-++.-+.--+-+.+.. ..+.+|..++.++++ .+.+| +..++
T Consensus 57 s~d~k~~~~ale~L~~~l~~~--~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTS--PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHC--HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhC--hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 445667788888888877653 3444444444444332112222221 245666666666644 35665 34555
Q ss_pred HHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHH
Q 003214 584 QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (838)
Q Consensus 584 ~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~ 663 (838)
+.|+. -. + |. +.-++..+-+.+..+.... .+ ..+++.+...+...+..-.+++++.+.
T Consensus 135 P~Lve----Kl---G-d~-----k~~vR~~~r~il~~l~~v~--~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 135 PYLLL----KT---G-EA-----KDNMRTSVRDIVNVLSDVV--GP-------LKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp HHHHH----GG---G-CS-----SHHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHH----Hh---C-CC-----hHHHHHHHHHHHHHHHHHC--CH-------HHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 55543 12 2 21 2334544444444443322 11 457777777887666677788888888
Q ss_pred HhhhcCCCCCHhhhHhH---HHHHHHHhhhHhhhhhhhhhhh
Q 003214 664 YMTFFSPTISLEMWSLW---PLMMEALADWAIDFFPNILVPL 702 (838)
Q Consensus 664 ~~~~~~~~~~~~l~~l~---~~l~~~~~~~~~~~l~~~~~~L 702 (838)
.++...+.- | ...+ |.+.+++++-+.......+.++
T Consensus 193 ~li~~~G~~-~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 193 YYITNAGIS-P--LKSLSVEKTVAPFVGDKDVNVRNAAINVL 231 (266)
T ss_dssp HHHHHHCSG-G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred HHHHhcCCC-c--cccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 887644322 3 2245 7777777655555665555554
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.21 E-value=15 Score=42.03 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=45.6
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCChh-----HHHHHHHHH-HhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 469 FSSPVGHLRAKAAWVAGQYAHINFSDQN-----NFRKALHSV-VSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 469 l~~~~~~lr~ra~~~l~~~~~~~~~~~~-----~~~~~~~~l-~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
|+++++-.|..||+.++.++. +++ ....++..+ ..+|.|++..||.+|+.||++++.+.
T Consensus 43 L~S~~~~~r~~A~~al~~l~~----~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQ----DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTT----SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHc----CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 478899999999999999874 222 123445444 45688999999999999999998764
No 103
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=74.12 E-value=1.3e+02 Score=34.66 Aligned_cols=70 Identities=9% Similarity=0.155 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh--h-chhhHHHHHHHHH
Q 003214 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--V-ENEDLVFTLETIV 568 (838)
Q Consensus 497 ~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~-~~~~l~~~l~~iv 568 (838)
....+.+.++..+.+.+..+...+..|++.++.-. +..-.-.+|.+++.+..-+.. . +...+..+|.++.
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~--P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD--PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC--CCccceehHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 34566667777778888888999999999998864 311112466788888777766 3 3334555555554
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=71.88 E-value=74 Score=30.72 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=100.7
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCC----------ChHHHHHHHHHhc--C-------cChhhHHHHHHH
Q 003214 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQ-YTP----------QHLVRLLQIIVDN--N-------CDLSVRQVASIH 61 (838)
Q Consensus 2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~-~~p----------~f~~~Ll~i~~~~--~-------~~~~iR~~Aai~ 61 (838)
|.+++.|.+....+|+ .|..|=..|..-. ..| |-...|++-+.+- . ...+-|--.++.
T Consensus 1 ~~~~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 1 DREKIYQWINELSSPE--TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp -CHHHHHHHHHTSSTT--THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCch--hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 4578889998887766 4777766665422 234 4444555444331 0 113446566666
Q ss_pred HHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHH----hc--CC---hHHHHHHHHHHHHHHHhhCCC--C---ChhH
Q 003214 62 FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFV----AQ--VP---PLLRVQLGECLKTIIHADYPE--Q---WPHL 127 (838)
Q Consensus 62 lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l----~~--~~---~~i~~~~~~~i~~Ia~~d~p~--~---Wp~l 127 (838)
|=..|..|-.. -+.+++.++.-.| .. .+ ..+|-..--+|+.+++.|=|+ . ..|+
T Consensus 79 LlQcvAshpet------------r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEi 146 (268)
T 2fv2_A 79 LLQCVASHPET------------RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEI 146 (268)
T ss_dssp HHHHHHHCTTT------------HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTH
T ss_pred HHHHHHcCcch------------hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhH
Confidence 66666655443 3445555555433 22 12 457777777888888877552 1 2567
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHHHcccCCccCcchHH---HHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHH
Q 003214 128 LDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPVY---RIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLIC 201 (838)
Q Consensus 128 l~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~~~~~~~~~---~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~l 201 (838)
+|-.+..++.| ..-.|..++.+|+-+- .+...+- +-+.++...+.++..++..+ .+..+++-++
T Consensus 147 iplCLrime~GselSKtvAtfIlqKIL~dd-----~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-----ps~RLLKhii 216 (268)
T 2fv2_A 147 IPLCLRIMESGSELSKTVATFILQKILLDD-----TGLAYICQTYERFSHVAMILGKMVLQLSKE-----PSARLLKHVV 216 (268)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHSH-----HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-----CCHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhccc-----hhHHHHHccHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHH
Confidence 77777777766 3345667777776532 1111111 11112222333333333322 2467889999
Q ss_pred HHhHHhhh
Q 003214 202 KIFWSSIY 209 (838)
Q Consensus 202 ki~~~~~~ 209 (838)
+||-++..
T Consensus 217 rcYlRLsd 224 (268)
T 2fv2_A 217 RCYLRLSD 224 (268)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99988764
No 105
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=67.77 E-value=83 Score=32.79 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHH
Q 003214 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (838)
Q Consensus 614 ~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~ 663 (838)
.+.-+..++..+ .++.+..+...+...+..++........|.++.+|.
T Consensus 271 FL~Ele~iLe~~--~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 271 FLNELEEILDVI--EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 456666677665 355677778888888999998888888899998885
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=64.37 E-value=86 Score=31.66 Aligned_cols=140 Identities=11% Similarity=0.149 Sum_probs=80.8
Q ss_pred cCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCCh----hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCC
Q 003214 48 NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQ----VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQ 123 (838)
Q Consensus 48 ~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~----e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~ 123 (838)
+..+.+.|.-++..+.+.+++.-.++ .+. +.+..|-..|+.+. .++.+...++..+...++++--..
T Consensus 88 ~~L~fE~RKd~~~if~~llr~~~~~~-------~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 88 QLIDFEGKKDVAQIFNNILRRQIGTR-------TPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp GGSCHHHHHHHHHHHHHHHTCCBTTB-------CHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred ccCCchhhccHHHHHHHHHhcccCCC-------CchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHHHHH
Confidence 35688899999999999888665432 111 01223333333333 355666677777776666542111
Q ss_pred ---ChhHHHHHHHHhhhh--hH-HHHHHHHHHHHHHcccCCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHH
Q 003214 124 ---WPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLI 197 (838)
Q Consensus 124 ---Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 197 (838)
+.+.+-.+++.++.+ .+ --|+.++++++... .....+.+..-+..+..-+..++++++ .-++
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-------k~lvaefL~~nyd~Ff~~y~~Ll~S~N-----YVTk 226 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-------KLLSAEFLEQHYDRFFSEYEKLLHSEN-----YVTK 226 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-------HHHHHHHHHHTHHHHHHHHHHHTTCSS-----HHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-------HHHHHHHHHHhHHHHHHHHHHHhcCCc-----chhH
Confidence 223344555677666 32 45677777777543 223334445555566666667776553 4567
Q ss_pred HHHHHHhHHhh
Q 003214 198 KLICKIFWSSI 208 (838)
Q Consensus 198 ~~~lki~~~~~ 208 (838)
+..+|.+..+.
T Consensus 227 RQSlKLLgelL 237 (341)
T 1upk_A 227 RQSLKLLGELL 237 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887765
No 107
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=63.52 E-value=2.1e+02 Score=32.75 Aligned_cols=206 Identities=12% Similarity=0.193 Sum_probs=97.9
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh-hhh
Q 003214 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM-NEV 555 (838)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll-~~~ 555 (838)
-.-...++++|. +.|.+ +.-++..+...+.. .-||-.+.-++.++.... ++.+...+..+++.++-=. ...
T Consensus 153 l~~~~~l~~~~~-~~~~~---~~~l~~~~~~~~~~--~~~~~~~l~i~~~~~~~~--~~~~~~~~~~~~~~l~~e~~~~~ 224 (778)
T 3opb_A 153 LSIILQLLNKFK-YNFKE---VRFLVKELILRISE--DEVKSMMLIIFAELQSSF--QKDFDKAVVDFMSSLIVEAEIDV 224 (778)
T ss_dssp HHHHHHHHHHSC-CCSTT---TTHHHHHHHTTTTC--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC-ccccc---hhhHHHHhccccCh--hhhHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHhhccCC
Confidence 333444455554 23332 33333443333332 336777777777766654 3555555555555333111 122
Q ss_pred chhhHHHHHHHHHHhhcccchhhHHHHHHHH------HHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh
Q 003214 556 ENEDLVFTLETIVDKFGEEMAPYALGLCQNL------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLP 629 (838)
Q Consensus 556 ~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~ 629 (838)
+++++..++..+..-| |.+++++..+ .+.+.+.|.+... .. +-..+-.++.+.+.+.
T Consensus 225 ~~~~~~~~~~~l~~lf-----Pi~p~~~s~lfl~e~~~~~l~~~~~~~~~--------~~----~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 225 GNDPLSIIVKTLSELY-----PSLTTLCSEIFLTKGLSKLFKKRVFEEQD--------LQ----FTKELLRLLSSACIDE 287 (778)
T ss_dssp SSCHHHHHHHHHHHHT-----TTTHHHHHHHHSTTTHHHHHHHHHHSSCC--------HH----HHHHHHHHHHHHCCSH
T ss_pred CCccHHHHHHHHHHHh-----cCCHHHHHHHHccccHHHHHHHHHhcccc--------hH----HHHHHHHHHHHHhCCc
Confidence 3455555555554433 5555666655 3344455543211 11 2223344555555666
Q ss_pred HHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccC
Q 003214 630 HLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRG 709 (838)
Q Consensus 630 ~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~ 709 (838)
.+-.-+...++|.+...+..+ ++-..+.-.|.-+-...+.-...+..+.+.+.+.+.+...+.....++-| +|+..+
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgL-aYLSl~ 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNVE--DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEAL-AYLSLK 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHH-HHHTTS
T ss_pred HHHHHHHHhHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHH-HHHhCC
Confidence 666667788899999998653 34444444444333222221122344555555554332222333333333 344444
Q ss_pred c
Q 003214 710 T 710 (838)
Q Consensus 710 ~ 710 (838)
+
T Consensus 365 ~ 365 (778)
T 3opb_A 365 A 365 (778)
T ss_dssp S
T ss_pred H
Confidence 3
No 108
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=63.36 E-value=1.5e+02 Score=30.93 Aligned_cols=119 Identities=14% Similarity=0.193 Sum_probs=82.2
Q ss_pred HhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCC-cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC
Q 003214 433 KDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD 511 (838)
Q Consensus 433 ~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~-~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 511 (838)
..-.|-++|++..+..- +.+..-..|+.+.++|+-..++ ..-...-..|+.+|.+ +++.....++..++++=--
T Consensus 188 IaeLLeilgsIinGfa~--PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~e---KDp~L~~~vi~~LLk~WP~ 262 (403)
T 3fga_B 188 IAELLEILGSIINGFAL--PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLKYWPK 262 (403)
T ss_dssp HHHHHHHHHHHHHHCCS--SCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHcccCC--CchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCC
Confidence 34577888888887532 3445567888899999887653 3334566677777765 3677788899999888544
Q ss_pred CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch
Q 003214 512 PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (838)
Q Consensus 512 ~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 557 (838)
++..-.+.=..=+..+++..+ ++.+.+...++...+..+++....
T Consensus 263 tns~KevlFL~Ele~iLe~~~-~~~f~~i~~~lf~~la~ci~S~hf 307 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSSPHF 307 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred CCcHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHCCCCH
Confidence 444444455555666666553 677888888888888888876543
No 109
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=61.63 E-value=31 Score=40.46 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 003214 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 549 (838)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~ 549 (838)
+++..+|+.|...+|... +.+++. .+.++..| ++.++.||..|+.||..++... | .+.+++.|-
T Consensus 589 d~~d~VRraAViaLGlI~---~g~~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aGn-------~-~~~aid~L~ 653 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVL---LRDYTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAGK-------G-LQSAIDVLD 653 (963)
T ss_dssp CSCHHHHHHHHHHHHHHT---SSSCSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS-------C-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhc---cCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-------C-cHHHHHHHH
Confidence 344456666666666532 112222 22233333 3455667777777776654321 1 144555555
Q ss_pred HHhhhhchhhHHHHHHHHHH---hhcccchhhHHHHHHHHH
Q 003214 550 KLMNEVENEDLVFTLETIVD---KFGEEMAPYALGLCQNLA 587 (838)
Q Consensus 550 ~ll~~~~~~~l~~~l~~iv~---~~~~~i~p~~~~l~~~L~ 587 (838)
.++.+.+...-..++.++-. .-.+...|...++...|.
T Consensus 654 ~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 55554443333333333322 222333444444444443
No 110
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=60.86 E-value=1.7e+02 Score=30.93 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=81.9
Q ss_pred hhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCC-cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 003214 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~-~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 509 (838)
.-..-.|-++|++..+.. .+.+..-..|+.+.++|+...++ ..-...-..|+.+|.+ +++.....++..++++=
T Consensus 219 nGIaeLLeilgSIinGfa--~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~e---KDp~L~~~vi~~LLk~W 293 (449)
T 2npp_B 219 NGIAELLEILGSIINGFA--LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLKYW 293 (449)
T ss_dssp SCHHHHHHHHHHHHSSCC--SSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHh---cCcHhHHHHHHHHHHhC
Confidence 344456778888877653 23445667888899999988653 3334455677777765 36777888999998885
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch
Q 003214 510 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (838)
Q Consensus 510 ~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 557 (838)
--++..-.+.-..-+..+++..+ ++.+.+...++...+..+++....
T Consensus 294 P~tns~KevlFL~eleeile~~~-~~ef~~i~~~lF~~la~ci~S~hf 340 (449)
T 2npp_B 294 PKTHSPKEVMFLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSSPHF 340 (449)
T ss_dssp CSSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred CCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44444444455556666666553 777888888899888888876443
No 111
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=59.30 E-value=32 Score=36.49 Aligned_cols=264 Identities=14% Similarity=0.195 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH-HHHHHHHHHhhhhchhh---HHHHHHHHHHhh
Q 003214 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP-QLLDEFFKLMNEVENED---LVFTLETIVDKF 571 (838)
Q Consensus 496 ~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~-~il~~L~~ll~~~~~~~---l~~~l~~iv~~~ 571 (838)
.++.-+|+.++..+.+++.. +...+.|++ ..+..|+.++...+..+ +..+|-.+...+
T Consensus 132 pHLqlVYe~llrfv~s~~f~------------------~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 193 (449)
T 2npp_B 132 PHLQLVYEFFLRFLESPDFQ------------------PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 193 (449)
T ss_dssp HHHHHHHHHHHHHHTSTTCC------------------STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHccCCC------------------hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 46777888777776654321 122223333 36777777777655443 444555554443
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC-ChHHHHH-HHhhHHHHHHHHhcc
Q 003214 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQ-IEPTLLPIMRRMLTT 649 (838)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~-~~~~~~~-l~~~~~p~i~~~l~~ 649 (838)
- ...++... .+...|.+.+.+... ... ...+++.+++|+....- -.+.... +...++|+... +
T Consensus 194 ~-~~R~~Irk---~i~nif~~fi~e~e~------~nG--IaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~---~ 258 (449)
T 2npp_B 194 L-GLRAYIRK---QINNIFYRFIYETEH------HNG--IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKV---K 258 (449)
T ss_dssp T-TTHHHHHH---HHHHHHHHHHHTCSC------CSC--HHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGS---S
T ss_pred H-HHHHHHHH---HHHHHHHHHhcccCC------CCC--HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcc---c
Confidence 2 23344333 333444454432111 011 24678888888887631 1111111 22334444331 1
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCCCHhh----hHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHH
Q 003214 650 DGQEVFEEVLEIVSYMTFFSPTISLEM----WSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSL 725 (838)
Q Consensus 650 ~~~~~~~~~l~ll~~~~~~~~~~~~~l----~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l 725 (838)
....|......++..++.+.+.++..+ ...||.-.. .-..-++..+..+|+ ...+++|. ..+..+
T Consensus 259 ~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns---~KevlFL~eleeile---~~~~~ef~-----~i~~~l 327 (449)
T 2npp_B 259 SLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHS---PKEVMFLNELEEILD---VIEPSEFV-----KIMEPL 327 (449)
T ss_dssp CGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCH---HHHHHHHHHHHHHHT---TCCHHHHH-----HHHHHH
T ss_pred hhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHH---hCCHHHHH-----HHHHHH
Confidence 223444444455555565544433321 122221100 001235555555554 22455554 578889
Q ss_pred HHHHHHHhcCCCCCCCccCchhHHHH--HHHHHcccCcccchHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHhhccC
Q 003214 726 WSMVSSIMADKNLEDGDIEPAPKLIE--VVFQNCKGQVDHWVEPYLRITVERLRR----AEKSYLKCLLVQVIADALYYN 799 (838)
Q Consensus 726 ~~~~~~~l~~~~~~~~~~~~~~~ll~--~i~~~~~~~~~~~l~~il~~~l~~l~~----~~~~~~~~~~l~v~~~~~~~~ 799 (838)
+..+.+++.++.....+ .|+.+.. .++.- +...-..|+..++..|.. .=++.++.....+.-.++-.|
T Consensus 328 F~~la~ci~S~hfqVAE--rAL~~w~N~~i~~l----i~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 328 FRQLAKCVSSPHFQVAE--RALYYWNNEYIMSL----ISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHHHHTCSCHHHHH--HHHGGGGCHHHHHH----HHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHH--HHHHHHCCHHHHHH----HHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 99999999765322111 1111110 00000 122333455556665533 225556666666666666678
Q ss_pred hHHHHHHHHh
Q 003214 800 SSLTLSILHK 809 (838)
Q Consensus 800 ~~~~~~~L~~ 809 (838)
|..+-+...+
T Consensus 402 ~~lf~~c~~~ 411 (449)
T 2npp_B 402 QKLFDDCTQQ 411 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877665543
No 112
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=51.19 E-value=82 Score=27.48 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhccc--
Q 003214 500 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE-- 574 (838)
Q Consensus 500 ~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~-- 574 (838)
.-+...+..|.+..+++.-.....|..++.+.. .+-..+++.+.+-+.....+. +++++.+|+...+.+
T Consensus 5 ~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~------~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~ 78 (145)
T 3d9j_A 5 KTFNSELYSLNDYKPPISKAKMTQITKAAIKAI------KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFG 78 (145)
T ss_dssp HHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcC
Confidence 345555666665444456666777777766532 255667777777776665543 788999999877653
Q ss_pred --chhhHHHHHHHHHHHHHHHH
Q 003214 575 --MAPYALGLCQNLAAAFWRCM 594 (838)
Q Consensus 575 --i~p~~~~l~~~L~~~~~~~~ 594 (838)
..||++.....|++.|..+.
T Consensus 79 ~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 79 QEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHHHHH
Confidence 34788888888887665544
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=49.66 E-value=1.1e+02 Score=36.35 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=73.8
Q ss_pred HHHHHHHhhccccccc-CCCcchhhHHHHHHHhhh--cc-ccCChhHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHH
Q 003214 455 SELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYA--HI-NFSDQNNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVE 529 (838)
Q Consensus 455 ~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~--~~-~~~~~~~~~~~~~~l~~~l~~~~-~~V~~~A~~al~~~~~ 529 (838)
..++.++. .+..... +++- .|.+++-++..|. .. .+.+ +....+...++.+|.|+. +-||..|+.+|..++.
T Consensus 797 ~~~~~~l~-~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~-~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~ 873 (997)
T 1vsy_5 797 NHVAAIVD-YVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTE-EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH 873 (997)
T ss_dssp HHHHHHHH-HSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCT-THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 34555554 3444444 3455 8888877765442 22 2223 345789999999999999 8899999999999986
Q ss_pred hcccccccccchHHHHHHHHHHhhh-------------h--chhhHHHHHHHHHHhhcccc--hhhHHHHHHHHH
Q 003214 530 ACRDLNEIRPILPQLLDEFFKLMNE-------------V--ENEDLVFTLETIVDKFGEEM--APYALGLCQNLA 587 (838)
Q Consensus 530 ~~~~~~~l~p~l~~il~~L~~ll~~-------------~--~~~~l~~~l~~iv~~~~~~i--~p~~~~l~~~L~ 587 (838)
-........ +++..+...... . .--.....|+++|..+.-.+ =|++++++..|.
T Consensus 874 c~~~~~~~~----~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 874 NWKEEQPLL----SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp SCCSHHHHH----HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred cCCchhhHH----HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 531111111 222222222200 0 00124456788888886655 347888776665
No 114
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=48.33 E-value=2.5e+02 Score=29.04 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHH
Q 003214 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (838)
Q Consensus 613 ~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~ 663 (838)
-.+.-+..++..++ ++-+.++...+...+..|+........|.|+.+|.
T Consensus 315 lFL~eleeiLe~~~--~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 315 MFLNELEEILDVIE--PSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 34666677777663 55667777888888888988888788888888775
No 115
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=46.50 E-value=2.7e+02 Score=28.84 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=74.1
Q ss_pred hhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCC-cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003214 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (838)
Q Consensus 430 ~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~-~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (838)
..-..-.|-.+|++..+..- +.+.....|+.+.++|+...++ ..-...-..|+.+|.+ +++.....++..++++
T Consensus 230 ~~GIaeLLeilgsIIngfa~--PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~e---KDp~L~~~vi~~LLk~ 304 (392)
T 2jak_A 230 HNGIAELLEILGSIINGFAL--PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLKY 304 (392)
T ss_dssp CSCHHHHHHHHHHHHHTCCS--SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHh---cCchhHHHHHHHHHHh
Confidence 34445677788888877532 3445667888899999988653 2333445566666654 3666777888888877
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003214 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (838)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (838)
=--++..-.+.=..-+..+++..+ .+.+.+...++...+..+++.
T Consensus 305 WP~tns~KevlFL~eleeiLe~~~-~~~f~~i~~~lF~~la~ci~S 349 (392)
T 2jak_A 305 WPKTHSPKEVMFLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSS 349 (392)
T ss_dssp SCSSCCTTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHcC
Confidence 533333334444455555565553 566666667777666666654
No 116
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=46.35 E-value=23 Score=34.00 Aligned_cols=109 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred hcccccccCCCc--chhhHHHHHHHhhhccccCChhHHHH--HHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 003214 463 QHVFPEFSSPVG--HLRAKAAWVAGQYAHINFSDQNNFRK--ALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 538 (838)
Q Consensus 463 ~~v~p~l~~~~~--~lr~ra~~~l~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~ 538 (838)
..++..|.++++ -++..|++.+...+.-...+...... .++.++..|.+++..++..|+.||.++..... .....
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~-~nk~~ 89 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN-DNKLE 89 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHH
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc
Q 003214 539 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG 572 (838)
Q Consensus 539 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~ 572 (838)
=.-...+..|.+++.......+..-.-.....++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
No 117
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=42.19 E-value=38 Score=32.43 Aligned_cols=128 Identities=9% Similarity=0.082 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHH-HHHHHHHHHhhcCCc-chHHHHHHHhh
Q 003214 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGAL-LAIGALCDKLKQTEP-YKSELERMLVQ 463 (838)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l-~~lg~i~~~l~~~~~-~~~~~~~~l~~ 463 (838)
.|-.|..++....+....+.++.+ ...+.. .+||...|+.. .++|.+.. +.+. ....+..
T Consensus 77 ~r~~ai~~l~~~~k~~~~~~l~~~----~~~l~~-------~~nWd~~D~~a~~~~g~~~~---~~p~~~~~~l~~---- 138 (232)
T 3jxy_A 77 FQAAALDIMQKYKKHINETHIPFL----EELIVT-------KSWWDSVDSIVPTFLGDIFL---KHPELISAYIPK---- 138 (232)
T ss_dssp HHHHHHHHHHHTGGGCCGGGHHHH----HHHHTS-------SCCHHHHHHHTTTHHHHHHH---HCGGGGGGTHHH----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH----HHHHcc-------CCChHHHHHhhHHHHHHHHH---HCHHHHHHHHHH----
Confidence 677777776644333333444333 233332 24899999763 45554332 2211 1122233
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 003214 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (838)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (838)
...++++++|+.|+...-.|. ........+..+...+.|++.-|+-+-+.+|+.+.-.. ++.+.+|+.
T Consensus 139 ----W~~s~~~w~rR~ai~~~l~~~-----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~--p~~v~~fl~ 206 (232)
T 3jxy_A 139 ----WIASDNIWLQRAAILFQLKYK-----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN--PDVVWEYVQ 206 (232)
T ss_dssp ----HHHSSCHHHHHHHHHTTTTCG-----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred ----HhcCCchHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC--HHHHHHHHH
Confidence 335788999998876542221 11223456666677788888889999999999876653 455555554
No 118
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=41.17 E-value=1.5e+02 Score=27.25 Aligned_cols=82 Identities=7% Similarity=0.133 Sum_probs=48.3
Q ss_pred hhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCC-CccCchhHHHHHHHHHcccCcccchHHHHHHH
Q 003214 694 FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLED-GDIEPAPKLIEVVFQNCKGQVDHWVEPYLRIT 772 (838)
Q Consensus 694 ~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~ 772 (838)
.+..++...++.+.+.. -.++ .|++.++..+-.++-.+.... .-+..+++++..|..+++......-+.+...+
T Consensus 62 ~L~~lm~~~~ALl~N~~-l~le----pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl 136 (196)
T 4atg_A 62 VLKTCIALYFSLIKNKH-VFID----PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTL 136 (196)
T ss_dssp HHHHHHHHHHHHHHCTT-CCCG----GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CChH----HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHH
Confidence 34445555555555433 3332 677777665444443233322 22357888888888888876666666677777
Q ss_pred HHHHhhhh
Q 003214 773 VERLRRAE 780 (838)
Q Consensus 773 l~~l~~~~ 780 (838)
.+.+.++.
T Consensus 137 ~k~l~dp~ 144 (196)
T 4atg_A 137 KGVWMDPN 144 (196)
T ss_dssp HHHHTCTT
T ss_pred HHHHcCCC
Confidence 77776654
No 119
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=40.75 E-value=11 Score=21.31 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=10.2
Q ss_pred cccCChhhHhhhh
Q 003214 354 LMCFNDNDQKLWD 366 (838)
Q Consensus 354 ~l~~~~~d~e~w~ 366 (838)
-++++++|++.|-
T Consensus 10 dlmlspddi~qw~ 22 (28)
T 2b3g_B 10 DLMLSPDDIEQWF 22 (28)
T ss_dssp GGGCCHHHHHHHH
T ss_pred hhhcChHHHHHHh
Confidence 4568999999883
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=40.49 E-value=1.4e+02 Score=33.91 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.0
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhc
Q 003214 505 VVSGLRDPELPVRVDSVFALRSFVEAC 531 (838)
Q Consensus 505 l~~~l~~~~~~V~~~A~~al~~~~~~~ 531 (838)
+++.|+++++..|..||.||.+++.+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~ 65 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDA 65 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCc
Confidence 445678899999999999999999764
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.56 E-value=26 Score=33.38 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003214 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (838)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~ 464 (838)
..|..|..++....+.... .-+..+...+.. .+||...|+...++|.+.. ..+. .+...
T Consensus 70 E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~-------~~nWd~~D~~a~~~~~~~~---~~~~---~~~~~---- 128 (220)
T 2b6c_A 70 EYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQ-------KAWWDSVDAWRKFFGSWVA---LHLT---ELPTI---- 128 (220)
T ss_dssp HHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTT-------TCSHHHHHHHHHHHHHHHH---HSGG---GHHHH----
T ss_pred HHHHHHHHHHHHHHhhCCH----HHHHHHHHHhcc-------CCcHHHHHHHHHHHHHHHH---HChH---HHHHH----
Confidence 3577777776654322222 223333333322 2599999987655554432 2211 12222
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 003214 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (838)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (838)
+.....+++.++|+.|+...=.|. .......+++.+-..+.|++--|+-+-+.+|+.+.... ++.+.+|+
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~-----~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~--~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLK-----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN--PQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCG-----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC--HHHHHHHH
Confidence 223446789999999887442221 22334566777777889988889999999999876653 45555554
No 122
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.23 E-value=2.7e+02 Score=24.97 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=64.0
Q ss_pred HHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cc
Q 003214 457 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DL 534 (838)
Q Consensus 457 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~--~~ 534 (838)
++.++...--+.+..++.-+--..|-.+.. ++.....++.++.+.|++.++.|++.|...|..++.+|. .+
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~-------~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh 86 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINK-------ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFH 86 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHH-------STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHc-------CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 455555544444444544333445554422 223457788888888988888999999999999999985 22
Q ss_pred cccccchHHHHHHHHHHhhhh-----chh----hHHHHHHHHHHhhcc
Q 003214 535 NEIRPILPQLLDEFFKLMNEV-----ENE----DLVFTLETIVDKFGE 573 (838)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~~~-----~~~----~l~~~l~~iv~~~~~ 573 (838)
..+. -..+++.|..+++.- ... .++.++..-...|+.
T Consensus 87 ~eva--s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 87 NEVG--KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHT--SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHh--hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2222 245566666666421 111 245555555556654
No 123
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=31.25 E-value=1.2e+02 Score=30.68 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH------HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 003214 457 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN------FRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (838)
Q Consensus 457 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~ 530 (838)
.+.|+..+- .++.+++-+.|+.++.++|.+-.-. .+... -...+..++.+|.|.+.-++..|-+.++-|+.+
T Consensus 207 yd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelLldr-~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 207 YDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDR-HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHhcCCcchhHHHHHHHHHHHHhCc-hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 344444332 3668888899999999999973210 01110 155678889999999999999999999999998
Q ss_pred cc
Q 003214 531 CR 532 (838)
Q Consensus 531 ~~ 532 (838)
.+
T Consensus 285 P~ 286 (341)
T 1upk_A 285 PN 286 (341)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 124
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=30.59 E-value=2.6e+02 Score=28.21 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 003214 545 LDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623 (838)
Q Consensus 545 l~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~ 623 (838)
.+.++.-+...+.+++-.+|-++-..+.++. .|+.+.+. .=..++.++...+. .. ...+++.++..++.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~-~Fa~EFI~~~GL~~Li~vi~~~~--------gN-~q~Y~L~AL~~LM~ 189 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDK-DLVPEFVHSEGLSCLIRVGAAAD--------HN-YQSYILRALGQLML 189 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCT-THHHHHHHTTHHHHHHHHHTTSC--------HH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcch-HHHHHHHHhccHHHHHHHHHhcC--------hH-HHHHHHHHHHHHHh
Confidence 3334444444444556666666665554332 23444332 11223334443321 11 24567777777766
Q ss_pred hhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q 003214 624 SVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (838)
Q Consensus 624 ~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~ 669 (838)
.+..-..+.. .+.++..+...+..........++.|+..++.++
T Consensus 190 ~v~Gm~gvvs--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 190 FVDGMLGVVA--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp SHHHHHHHHH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchhC--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC
Confidence 5321112221 2344444554554444567788999999888765
No 125
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=30.53 E-value=3.8e+02 Score=25.87 Aligned_cols=139 Identities=15% Similarity=0.205 Sum_probs=82.8
Q ss_pred hhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhh----cccccccC-----CCcchhhHHHHHHHhhhccccCChhH----
Q 003214 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQ----HVFPEFSS-----PVGHLRAKAAWVAGQYAHINFSDQNN---- 497 (838)
Q Consensus 431 ~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~----~v~p~l~~-----~~~~lr~ra~~~l~~~~~~~~~~~~~---- 497 (838)
...-.++.++.++|.+ ++.+. .|+.. ++.|.|+. +.-.+|-.++=++|...+.. +++.
T Consensus 71 nRVcnaLaLlQcvAsh----petr~---~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d--d~eVi~fL 141 (268)
T 2fv2_A 71 NRVCNALALLQCVASH----PETRS---AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD--EQEVINFL 141 (268)
T ss_dssp HHHHHHHHHHHHHHHC----TTTHH---HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC--CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC----cchhh---HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC--cHHHHHHH
Confidence 4456666677777753 22221 22322 34444442 24589999999999988643 5432
Q ss_pred -HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc-hhhHHHHHHHHHHhhcccc
Q 003214 498 -FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE-NEDLVFTLETIVDKFGEEM 575 (838)
Q Consensus 498 -~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~-~~~l~~~l~~iv~~~~~~i 575 (838)
-.++++..++.|...+..-|.-|..-+..++.+...-+++ -...+ ...+..+++.++....++-
T Consensus 142 L~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~Yi--------------C~t~eRF~av~~vL~~mV~~l~~~p 207 (268)
T 2fv2_A 142 LTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYI--------------CQTYERFSHVAMILGKMVLQLSKEP 207 (268)
T ss_dssp HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHH--------------TSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHH--------------HccHHHHHHHHHHHHHHHHHHhcCC
Confidence 2567777777776555566777777777777664311111 11111 1236677777777665543
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 003214 576 APYALGLCQNLAAAFWRCMN 595 (838)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~ 595 (838)
.+.+.++.+.++.++.+
T Consensus 208 ---s~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 208 ---SARLLKHVVRCYLRLSD 224 (268)
T ss_dssp ---CHHHHHHHHHHHHHHTT
T ss_pred ---ChHHHHHHHHHHHHHhc
Confidence 33778888888888643
No 126
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=29.66 E-value=1.1e+02 Score=36.42 Aligned_cols=96 Identities=11% Similarity=0.246 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhh-CCCCChhHHHHH
Q 003214 54 VRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVP-PLLRVQLGECLKTIIHAD-YPEQWPHLLDWV 131 (838)
Q Consensus 54 iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~-~~i~~~~~~~i~~Ia~~d-~p~~Wp~ll~~l 131 (838)
+|..+..++...+=+|.- .++.+++..|.+.++.+|.++. -.||...+.+++-+.+.- +...=.+++...
T Consensus 817 ~R~~~L~~lq~~~f~n~f--------~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f 888 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAELL--------QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERF 888 (997)
T ss_dssp SHHHHHHHHHHHHHHHTT--------TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 888877777777666654 4888899999999999999999 999999999999998764 312222455544
Q ss_pred HHHhhh------------h---hHHHHHHHHHHHHHHcccC
Q 003214 132 KHNLQD------------Q---QVYGALFVLRILSRKYEFK 157 (838)
Q Consensus 132 ~~~l~s------------~---~~~~~L~~L~~i~~~~~~~ 157 (838)
...+.. . ..|+|...|.+++..+.|.
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~ 929 (997)
T 1vsy_5 889 AKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYV 929 (997)
T ss_dssp TTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCC
Confidence 444411 1 4699999999999988765
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=28.62 E-value=5.3e+02 Score=30.87 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=88.5
Q ss_pred HHHHHH----HHHHHHHhhc---ccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHH
Q 003214 386 PRTASM----DFVSELVRKR---GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 458 (838)
Q Consensus 386 ~r~~a~----~ll~~l~~~~---~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~ 458 (838)
.|.+|. .++...|... +.+.++++...+.+.+.+ .+...+-.+|.+||.+... . .+.
T Consensus 411 l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~--------~~~~~~~~~LkaLGN~g~p--~------~l~ 474 (1056)
T 1lsh_A 411 LRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR--------AKEEEIVLALKALGNAGQP--N------SIK 474 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTCG--G------GHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc--------CChHHHHHHHHHhhccCCh--h------HHH
Confidence 455444 4444444332 234567777766666643 2566778888888877541 1 122
Q ss_pred HHHhhccccccc----CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc
Q 003214 459 RMLVQHVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL 534 (838)
Q Consensus 459 ~~l~~~v~p~l~----~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~ 534 (838)
.+.++ +|... +....+|..|+|.+.+++.. .|.....++-.+... ...+.-||.+|+..|-.. ...
T Consensus 475 -~l~~~-l~~~~~~~~~~~~rvr~aAi~ALr~~~~~---~p~~v~~il~~i~~n-~~e~~EvRiaA~~~Lm~t--~P~-- 544 (1056)
T 1lsh_A 475 -KIQRF-LPGQGKSLDEYSTRVQAEAIMALRNIAKR---DPRKVQEIVLPIFLN-VAIKSELRIRSCIVFFES--KPS-- 544 (1056)
T ss_dssp -HHHTT-STTSSSCCCCSCHHHHHHHHHTTTTGGGT---CHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHT--CCC--
T ss_pred -HHHHh-hcCccccccccchHHHHHHHHHHHHhhhh---chHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHH--CcC--
Confidence 23343 33221 12346778899999888742 343333332222221 223455999988777431 211
Q ss_pred cccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccchhhHHHHH
Q 003214 535 NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC 583 (838)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~ 583 (838)
...++.+...+..-.+..+...+.+.+..+.+.-.|....+.
T Consensus 545 -------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la 586 (1056)
T 1lsh_A 545 -------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVA 586 (1056)
T ss_dssp -------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred -------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 234555556665434556666666666666655556444433
No 128
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.48 E-value=2.3e+02 Score=26.05 Aligned_cols=67 Identities=13% Similarity=-0.005 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCcCh-hhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003214 38 LVRLLQIIVDNNCDL-SVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (838)
Q Consensus 38 ~~~Ll~i~~~~~~~~-~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~ 113 (838)
...++..+.+++... .+|-+||-.+..-++++=.. .+.-+..|-+.+.+.+.++++.+...++.+.+
T Consensus 89 ipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~---------y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~G 156 (196)
T 4atg_A 89 LPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS---------YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYC 156 (196)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT---------STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc---------CchHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 344444444443322 68888888888877665442 23356667777777776666655555555444
No 129
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=23.52 E-value=3.8e+02 Score=29.39 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHh-cCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 003214 19 EERKAAEHSLNQFQYTPQHLVRLLQIIVD-NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFV 97 (838)
Q Consensus 19 ~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~-~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l 97 (838)
-+|..|-|.|-.+..-|+-...|.+++.. ....=++|+-|.+-+|-. .. .+.. ...+-+.++.+|
T Consensus 243 PVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~D-------LL~~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 243 PVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KE-------FVED--KDGLCRKLVSLL 308 (800)
T ss_dssp HHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GG-------GCCC--HHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HH-------HHHH--HHHHHHHHHhhc
Confidence 47888888888884445434555555522 123568999999999855 21 1222 667888888999
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh-----hHHHHHHHHHHHHHH
Q 003214 98 AQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRK 153 (838)
Q Consensus 98 ~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-----~~~~~L~~L~~i~~~ 153 (838)
.+.+.-||...|.++.-|+ .|+.-+.++..+..++.+- ..-+.|..|..++..
T Consensus 309 ~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcC
Confidence 9999999999999999998 6778888999888888764 456677888888764
Done!