Query 003215
Match_columns 838
No_of_seqs 353 out of 1375
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 6E-33 1.3E-37 272.9 15.0 143 152-295 16-158 (198)
2 KOG1717 Dual specificity phosp 100.0 3.6E-32 7.8E-37 282.3 14.2 190 90-293 121-313 (343)
3 KOG1716 Dual specificity phosp 100.0 2.5E-31 5.3E-36 282.3 19.1 193 151-347 73-267 (285)
4 smart00195 DSPc Dual specifici 100.0 3.7E-30 8.1E-35 242.1 17.6 138 153-291 1-138 (138)
5 PF00782 DSPc: Dual specificit 100.0 1.2E-28 2.5E-33 229.9 14.1 131 160-291 1-133 (133)
6 cd00127 DSPc Dual specificity 100.0 7.1E-28 1.5E-32 225.0 16.7 138 152-289 1-139 (139)
7 PRK12361 hypothetical protein; 99.9 1.7E-23 3.7E-28 239.5 17.8 140 152-292 94-237 (547)
8 PTZ00242 protein tyrosine phos 99.8 1.3E-18 2.8E-23 172.6 16.5 144 151-296 9-162 (166)
9 KOG1719 Dual specificity phosp 99.7 2E-17 4.4E-22 161.9 12.9 141 155-295 27-173 (183)
10 PTZ00393 protein tyrosine phos 99.7 4.2E-17 9.1E-22 170.1 15.6 123 169-294 107-231 (241)
11 COG2453 CDC14 Predicted protei 99.5 3.2E-14 6.9E-19 142.5 12.4 96 194-292 69-165 (180)
12 KOG0443 Actin regulatory prote 99.5 3.1E-14 6.7E-19 165.6 8.7 113 302-430 516-628 (827)
13 smart00262 GEL Gelsolin homolo 99.4 1.9E-13 4.2E-18 121.2 8.1 74 325-398 16-90 (90)
14 KOG1720 Protein tyrosine phosp 99.4 1.3E-12 2.8E-17 133.8 14.7 118 171-290 87-206 (225)
15 KOG0444 Cytoskeletal regulator 99.4 1.3E-13 2.7E-18 157.4 7.6 119 301-425 620-739 (1255)
16 PF00626 Gelsolin: Gelsolin re 99.1 1.1E-10 2.3E-15 99.8 4.3 68 325-392 8-76 (76)
17 PF05706 CDKN3: Cyclin-depende 99.1 4E-10 8.7E-15 112.7 9.0 97 168-265 61-168 (168)
18 TIGR01244 conserved hypothetic 99.0 3.3E-09 7.1E-14 102.1 12.7 116 153-275 2-128 (135)
19 PF03162 Y_phosphatase2: Tyros 98.9 6.3E-09 1.4E-13 103.8 10.0 115 153-270 7-129 (164)
20 KOG2836 Protein tyrosine phosp 98.9 7.8E-09 1.7E-13 100.3 9.4 116 170-291 33-152 (173)
21 smart00012 PTPc_DSPc Protein t 98.9 1.7E-08 3.8E-13 89.0 11.0 87 200-286 5-100 (105)
22 smart00404 PTPc_motif Protein 98.9 1.7E-08 3.8E-13 89.0 11.0 87 200-286 5-100 (105)
23 KOG0443 Actin regulatory prote 98.8 3.5E-09 7.6E-14 124.3 6.5 114 304-425 140-260 (827)
24 COG5350 Predicted protein tyro 98.6 3.1E-07 6.7E-12 91.0 10.6 113 170-283 24-146 (172)
25 PF04273 DUF442: Putative phos 98.6 2.6E-07 5.7E-12 87.0 8.9 92 153-250 2-104 (110)
26 cd00047 PTPc Protein tyrosine 98.5 5E-07 1.1E-11 92.6 10.1 57 230-286 165-226 (231)
27 KOG0444 Cytoskeletal regulator 98.4 9.7E-08 2.1E-12 110.4 2.7 75 325-402 1060-1141(1255)
28 smart00194 PTPc Protein tyrosi 98.4 1.7E-06 3.7E-11 90.5 10.3 68 219-286 177-253 (258)
29 PLN02727 NAD kinase 98.2 5.6E-06 1.2E-10 100.1 11.0 100 158-260 261-370 (986)
30 PRK15375 pathogenicity island 98.1 1.8E-05 4E-10 90.9 11.2 92 202-293 428-530 (535)
31 PF13350 Y_phosphatase3: Tyros 97.9 4.7E-05 1E-09 75.1 8.4 110 156-266 16-158 (164)
32 PF00102 Y_phosphatase: Protei 97.9 4E-05 8.7E-10 77.3 7.9 69 218-286 153-230 (235)
33 PF04179 Init_tRNA_PT: Initiat 97.8 0.00017 3.6E-09 82.8 12.4 133 155-287 291-448 (451)
34 smart00262 GEL Gelsolin homolo 97.7 2.8E-05 6.1E-10 69.2 4.2 72 740-836 17-88 (90)
35 COG3453 Uncharacterized protei 97.7 0.00035 7.5E-09 67.4 11.3 111 153-271 3-125 (130)
36 KOG2283 Clathrin coat dissocia 97.7 0.00017 3.7E-09 82.3 10.6 142 149-294 11-176 (434)
37 PF14566 PTPlike_phytase: Inos 97.6 0.00011 2.4E-09 72.2 6.9 59 195-255 90-148 (149)
38 PHA02746 protein tyrosine phos 97.5 0.00033 7.1E-09 77.0 9.5 54 232-285 248-306 (323)
39 PHA02742 protein tyrosine phos 97.5 0.00056 1.2E-08 74.5 10.8 53 231-283 229-286 (303)
40 PHA02747 protein tyrosine phos 97.5 0.00056 1.2E-08 74.9 10.2 54 232-285 230-288 (312)
41 PHA02740 protein tyrosine phos 97.4 0.0007 1.5E-08 73.9 10.3 52 231-282 221-277 (298)
42 PHA02738 hypothetical protein; 97.2 0.0017 3.8E-08 71.3 10.5 55 231-285 227-286 (320)
43 KOG1572 Predicted protein tyro 97.1 0.003 6.6E-08 67.0 10.5 113 153-268 60-184 (249)
44 KOG0792 Protein tyrosine phosp 96.9 0.0032 6.9E-08 77.4 9.5 80 206-285 1037-1122(1144)
45 COG2365 Protein tyrosine/serin 96.8 0.0021 4.5E-08 68.4 6.6 62 218-279 122-184 (249)
46 COG5599 PTP2 Protein tyrosine 96.7 0.0048 1E-07 66.6 8.1 77 205-285 193-286 (302)
47 KOG2386 mRNA capping enzyme, g 96.7 0.0027 5.8E-08 71.8 6.1 115 179-293 64-186 (393)
48 KOG0445 Actin regulatory prote 96.7 0.0012 2.6E-08 77.7 3.4 87 319-405 234-327 (919)
49 PF00626 Gelsolin: Gelsolin re 96.6 0.00091 2E-08 57.2 1.7 73 735-832 4-76 (76)
50 KOG0790 Protein tyrosine phosp 96.4 0.0059 1.3E-07 69.5 6.4 107 170-279 372-507 (600)
51 KOG0789 Protein tyrosine phosp 96.1 0.025 5.5E-07 62.8 9.9 59 227-285 295-359 (415)
52 KOG0791 Protein tyrosine phosp 95.0 0.063 1.4E-06 60.3 7.8 62 231-292 287-353 (374)
53 KOG0445 Actin regulatory prote 94.5 0.065 1.4E-06 63.8 6.4 75 325-399 663-742 (919)
54 PF14671 DSPn: Dual specificit 94.1 0.18 4E-06 50.1 7.8 102 155-272 3-111 (141)
55 KOG1984 Vesicle coat complex C 91.1 0.72 1.6E-05 56.8 8.7 64 327-390 883-973 (1007)
56 COG5028 Vesicle coat complex C 89.8 0.66 1.4E-05 56.5 6.7 62 328-389 739-828 (861)
57 KOG0260 RNA polymerase II, lar 89.2 1.9 4.2E-05 54.6 10.2 18 430-448 1418-1435(1605)
58 KOG4228 Protein tyrosine phosp 86.9 0.81 1.8E-05 57.6 5.2 57 218-274 713-778 (1087)
59 KOG0793 Protein tyrosine phosp 85.9 1.9 4.2E-05 52.2 7.3 62 230-291 926-994 (1004)
60 PTZ00395 Sec24-related protein 82.6 2.9 6.3E-05 54.1 7.3 32 327-358 1436-1467(1560)
61 KOG1985 Vesicle coat complex C 76.8 5.6 0.00012 49.2 7.0 30 328-357 766-795 (887)
62 KOG4228 Protein tyrosine phosp 75.3 4.7 0.0001 51.2 5.9 45 231-275 1018-1067(1087)
63 KOG4471 Phosphatidylinositol 3 67.4 9.5 0.00021 45.9 5.8 40 215-254 358-398 (717)
64 PF06602 Myotub-related: Myotu 54.1 41 0.00089 38.2 7.7 27 224-250 224-250 (353)
65 cd01518 RHOD_YceA Member of th 51.8 43 0.00094 30.1 6.2 28 229-259 59-86 (101)
66 COG0607 PspE Rhodanese-related 47.1 45 0.00097 29.8 5.5 68 173-255 14-83 (110)
67 KOG1089 Myotubularin-related p 41.3 38 0.00083 40.9 5.1 35 220-254 332-368 (573)
68 cd01533 4RHOD_Repeat_2 Member 39.0 60 0.0013 29.7 5.1 27 230-259 65-91 (109)
69 PF03861 ANTAR: ANTAR domain; 38.3 46 0.001 27.8 3.8 26 246-271 15-40 (56)
70 PLN02160 thiosulfate sulfurtra 36.5 52 0.0011 32.1 4.4 30 228-260 78-107 (136)
71 smart00400 ZnF_CHCC zinc finge 34.4 43 0.00094 27.8 3.1 32 235-268 23-54 (55)
72 PRK14116 gpmA phosphoglyceromu 33.5 83 0.0018 33.1 5.7 51 209-265 148-202 (228)
73 cd01528 RHOD_2 Member of the R 31.9 99 0.0021 27.8 5.2 28 230-260 57-84 (101)
74 cd01448 TST_Repeat_1 Thiosulfa 31.9 73 0.0016 29.5 4.5 31 228-260 76-106 (122)
75 PF00581 Rhodanese: Rhodanese- 31.4 2.2E+02 0.0047 25.2 7.3 82 176-260 10-98 (113)
76 PRK14118 gpmA phosphoglyceromu 28.7 1.1E+02 0.0024 32.2 5.6 51 209-265 147-201 (227)
77 KOG1984 Vesicle coat complex C 28.4 57 0.0012 41.3 3.9 78 743-830 885-973 (1007)
78 PRK10886 DnaA initiator-associ 27.9 1.1E+02 0.0025 31.9 5.5 39 213-254 23-61 (196)
79 PRK14119 gpmA phosphoglyceromu 26.9 1.1E+02 0.0025 32.0 5.4 51 209-265 148-202 (228)
80 PRK14117 gpmA phosphoglyceromu 25.8 1.3E+02 0.0028 31.8 5.5 52 209-266 148-203 (230)
81 cd01523 RHOD_Lact_B Member of 25.7 82 0.0018 28.2 3.6 28 229-259 59-86 (100)
82 cd01520 RHOD_YbbB Member of th 25.5 1.3E+02 0.0028 28.6 5.0 30 228-259 83-112 (128)
83 TIGR03865 PQQ_CXXCW PQQ-depend 24.8 1.3E+02 0.0027 30.4 5.1 29 229-259 114-142 (162)
84 PTZ00123 phosphoglycerate muta 24.3 1.4E+02 0.0031 31.6 5.6 51 209-265 135-189 (236)
85 PRK01112 phosphoglyceromutase; 24.1 1.5E+02 0.0032 31.5 5.6 53 209-267 147-203 (228)
86 PRK01415 hypothetical protein; 23.2 1.4E+02 0.0031 32.5 5.4 25 228-254 168-192 (247)
87 PRK05728 DNA polymerase III su 23.1 97 0.0021 30.7 3.8 24 216-239 14-37 (142)
88 COG2927 HolC DNA polymerase II 21.9 83 0.0018 31.9 3.1 22 218-239 16-37 (144)
89 TIGR03848 MSMEG_4193 probable 21.8 1.8E+02 0.004 29.6 5.6 50 210-265 116-172 (204)
90 PRK13938 phosphoheptose isomer 21.1 2E+02 0.0043 30.2 5.8 42 211-255 25-66 (196)
91 cd01522 RHOD_1 Member of the R 20.9 1.4E+02 0.0031 27.9 4.3 29 228-259 61-89 (117)
92 PRK05569 flavodoxin; Provision 20.6 5.1E+02 0.011 24.6 8.1 113 173-292 25-139 (141)
93 KOG0235 Phosphoglycerate mutas 20.5 3E+02 0.0064 29.7 7.0 53 209-267 130-186 (214)
94 PRK13463 phosphatase PhoE; Pro 20.3 1.9E+02 0.0042 29.7 5.4 51 209-265 119-171 (203)
95 PRK02866 cyanate hydratase; Va 20.2 60 0.0013 33.0 1.7 87 219-309 5-93 (147)
96 cd01842 SGNH_hydrolase_like_5 20.1 53 0.0011 34.5 1.3 15 796-810 162-176 (183)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=6e-33 Score=272.93 Aligned_cols=143 Identities=34% Similarity=0.536 Sum_probs=135.8
Q ss_pred ccceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCcccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcC
Q 003215 152 ECSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKG 231 (838)
Q Consensus 152 ~~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~G 231 (838)
.+++|++.|||++-.+|.+...|+++|||+|||++.+. |+....+++|.++|+.|.+...|..||+.+.|.|+....+|
T Consensus 16 ~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~g 94 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRG 94 (198)
T ss_pred chhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcC
Confidence 45999999999977888899999999999999986655 66677899999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHccC
Q 003215 232 GRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAF 295 (838)
Q Consensus 232 GrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~~~ 295 (838)
|++||||.|||||||++|+||||++++|++.|||.++|++||+|+||.|||+||+.||++|++.
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999885
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.98 E-value=3.6e-32 Score=282.33 Aligned_cols=190 Identities=25% Similarity=0.490 Sum_probs=159.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCccc-cccccccccccceeeCcEEEcCcccc
Q 003215 90 ARRSLDEWPKASSDDVGEWHQPPTPSGNKSGERLKLDLSSIQRNSDKNGGLVK-RDKIAFFDKECSKVAEHIYLGGDAVA 168 (838)
Q Consensus 90 ~R~s~~~~p~a~sd~s~~~~~P~TpSG~~~~e~lsldls~~~~~~d~~~gf~r-~dkl~~~~~~~SeI~pgLYLGs~~~A 168 (838)
-|-..+++++++.+.+ .| +.++.++..+++..+++.+++..=.. .++..| +.+|+|+||||+..++
T Consensus 121 fq~e~~~~ceT~~~~s----~P-----Glgsl~~~Sd~sd~es~~~r~~~ds~G~~ra~F----PV~ilp~LYLg~a~ds 187 (343)
T KOG1717|consen 121 FQAEASEHCETNLDGS----SP-----GLGSLRISSDCSDNESDLDRDPEDSDGPQRASF----PVEILPNLYLGCAKDS 187 (343)
T ss_pred hhhhhhhhcccccccC----CC-----ccccccccccCccchhhhhcccccccCCcccCc----chhhccchhccccccc
Confidence 4556678888887772 22 66777788888766655433221000 113332 4799999999999999
Q ss_pred CCHHHHHHcCceEEEeccCccCccccc--CCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhH
Q 003215 169 RDRDILKQHGITHILNCVGFVCPEYFK--ADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRST 246 (838)
Q Consensus 169 ~d~e~Lk~~GIThILN~a~e~~p~~~~--~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSa 246 (838)
.|.+.|+++||+|||||+... |+.|. .+|.|+.||+.|+..+++.++|++|+.||++++.++..|||||.+|||||+
T Consensus 188 ~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSv 266 (343)
T KOG1717|consen 188 TNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSV 266 (343)
T ss_pred ccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchh
Confidence 999999999999999987655 55554 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHc
Q 003215 247 SLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVH 293 (838)
Q Consensus 247 TVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~ 293 (838)
||++||||++..+++.+||++|+.++..|.||.+||.||+.||+.+.
T Consensus 267 TvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 267 TVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999774
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=2.5e-31 Score=282.25 Aligned_cols=193 Identities=36% Similarity=0.541 Sum_probs=164.2
Q ss_pred cccceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCcc-cccC-CcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003215 151 KECSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCPE-YFKA-DFVYRTLWLQDSPSEDITSILYDVFDYFEDVR 228 (838)
Q Consensus 151 ~~~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~-~~~~-d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~ 228 (838)
..+.+|.|+||+|+..++.+.+.|+++||||||||....... +... .++|+++++.|.+.+||..+|+++++||+.++
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~ 152 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR 152 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999986554333 2333 89999999999999999999999999999999
Q ss_pred hcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHccCCCCccccchhccc
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRI 308 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~~~p~spsS~~RLYRL 308 (838)
.+|++|||||.+|+|||+|++|||||++++|++++||++|+.+||++.||.||++||++||+.+........ .+..
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~~----~~~~ 228 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQG----GNLP 228 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcccc----cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987644332 3334
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCeEEEecCCeEE
Q 003215 309 APHSPYDPLHLVPKMLNDPTPSALDSRGAFIVHIPAAIY 347 (838)
Q Consensus 309 aphS~ydpl~LVPKmLndPsasSLnSr~cFIL~~P~~IY 347 (838)
.....+++...++............++..|.+..+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG1716|consen 229 SPDSISQEDSSEGDLSSSHKPTSAPSSLSFPLKSPSASS 267 (285)
T ss_pred Ccccccccccccccccccccccccccccccccccccccc
Confidence 445556677777777766666677777777776654433
No 4
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=3.7e-30 Score=242.14 Aligned_cols=138 Identities=38% Similarity=0.652 Sum_probs=129.5
Q ss_pred cceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCcccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCC
Q 003215 153 CSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGG 232 (838)
Q Consensus 153 ~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GG 232 (838)
+++|.|+||+|+.+++.+.+.|+++||++||||+.+.. .....++.|+++|+.|....++...|..+++||+.++.+|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999976543 34567899999999998888999999999999999999999
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Q 003215 233 RVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKR 291 (838)
Q Consensus 233 rVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~ 291 (838)
+|||||.+|++||+++++||||++++|++++|+++||++||.+.||.+|++||++||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999973
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=1.2e-28 Score=229.90 Aligned_cols=131 Identities=34% Similarity=0.579 Sum_probs=122.5
Q ss_pred EEEcCccccCCHHHHHHcCceEEEeccCccCcc--cccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEE
Q 003215 160 IYLGGDAVARDRDILKQHGITHILNCVGFVCPE--YFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVH 237 (838)
Q Consensus 160 LYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~--~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVH 237 (838)
||||+...+. .+.|+++||++||||+...... ....++.|+++|+.|....++..+|+.+++||++++.+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999997654331 346789999999999888999999999999999999999999999
Q ss_pred eCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Q 003215 238 CCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKR 291 (838)
Q Consensus 238 C~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~ 291 (838)
|.+|+|||+++++||||++++|++++|+++||++||.+.||.+|++||.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999984
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=7.1e-28 Score=224.99 Aligned_cols=138 Identities=43% Similarity=0.716 Sum_probs=128.7
Q ss_pred ccceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCc-ccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003215 152 ECSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCP-EYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREK 230 (838)
Q Consensus 152 ~~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p-~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~ 230 (838)
++++|.|+||+|+.+++.+.+.|+++||++||||+..... .....++.|+++++.|....++...+..+++||+.++.+
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999865543 344678999999999999888888999999999999999
Q ss_pred CCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Q 003215 231 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQ 289 (838)
Q Consensus 231 GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~E 289 (838)
+++|||||.+|+|||+++++||||++++|++++|+++||++||.+.||.+|+.||++||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=239.51 Aligned_cols=140 Identities=23% Similarity=0.305 Sum_probs=125.7
Q ss_pred ccceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCc---ccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003215 152 ECSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCP---EYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVR 228 (838)
Q Consensus 152 ~~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p---~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~ 228 (838)
..++|.|+||||+...+.+.+.|+++||++||||+.+... .....++.|+++|+.|...++ ..+|+++++||++++
T Consensus 94 ~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQV 172 (547)
T ss_pred cceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999865432 234567899999999987665 467999999999999
Q ss_pred hcCCEEEEEeCCCCChhHHHHHHHHHHh-cCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRV 292 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVIAYLMk~-~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L 292 (838)
++|++|||||.+|+|||+++++||||++ +++++++|+++||++||.+.||.+|+++|.+|.+..
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999977 589999999999999999999999999999988753
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=1.3e-18 Score=172.56 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=113.7
Q ss_pred cccceeeCcEEEcCccccC----CHHHHHHcCceEEEeccCccCc-ccc-cCCcEEEEEEccCCCCCchHHHHHHHHHHH
Q 003215 151 KECSKVAEHIYLGGDAVAR----DRDILKQHGITHILNCVGFVCP-EYF-KADFVYRTLWLQDSPSEDITSILYDVFDYF 224 (838)
Q Consensus 151 ~~~SeI~pgLYLGs~~~A~----d~e~Lk~~GIThILN~a~e~~p-~~~-~~d~~Yl~LpI~D~~~eDI~~~f~eaidFI 224 (838)
..++-|...+..=..+... +.+.|+++||++||+++....+ +.+ ..++.|+++|+.|..... ...+...+++|
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~-~~~i~~~~~~i 87 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPP-KAVIDNWLRLL 87 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCC-HHHHHHHHHHH
Confidence 3445567776665555442 4588999999999998654322 122 358899999998866543 34567777888
Q ss_pred HHHHhc----CCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHccCC
Q 003215 225 EDVREK----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFP 296 (838)
Q Consensus 225 eeA~~~----GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~~~p 296 (838)
++++.. |++|+|||.+|+|||++++++|||++.++++++|+++||.+||.+ +|..|+.+|.+|++.+.+..
T Consensus 88 ~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~~ 162 (166)
T PTZ00242 88 DQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAAG 162 (166)
T ss_pred HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccCC
Confidence 877654 999999999999999999999999999999999999999999986 58999999999999876543
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.73 E-value=2e-17 Score=161.92 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=122.9
Q ss_pred eeeCcEEEcCcc-ccCCHHHHHHcCceEEEeccCccCc-----ccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003215 155 KVAEHIYLGGDA-VARDRDILKQHGITHILNCVGFVCP-----EYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVR 228 (838)
Q Consensus 155 eI~pgLYLGs~~-~A~d~e~Lk~~GIThILN~a~e~~p-----~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~ 228 (838)
+|..++.+|-.+ ...+.+.+++.|+..|+.|.....- .+..-++.++.|+..|.-..+-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 778888888765 3458889999999999998643211 1234578999999999988777778999999999999
Q ss_pred hcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHccC
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAF 295 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~~~ 295 (838)
..|..|||||.||++||+|+|++|||+..+|+.++|+++||++||.|-..+++++.|.+|.+.+...
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~ 173 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVAN 173 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999877543
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.73 E-value=4.2e-17 Score=170.12 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=106.2
Q ss_pred CCHHHHHHcCceEEEeccCccCc--ccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhH
Q 003215 169 RDRDILKQHGITHILNCVGFVCP--EYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRST 246 (838)
Q Consensus 169 ~d~e~Lk~~GIThILN~a~e~~p--~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSa 246 (838)
...+.|+++||++||++++...+ .+...++.++++++.|..... ...+++.+++|++++..|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 35688999999999998764432 223568999999999987655 356788889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHcc
Q 003215 247 SLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHA 294 (838)
Q Consensus 247 TVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~~ 294 (838)
++++||||. +||++++|+++||.+||.+ +|..+++.|.+|+++..+
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 999999997 7999999999999999988 699999999999998744
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-14 Score=142.48 Aligned_cols=96 Identities=24% Similarity=0.325 Sum_probs=81.7
Q ss_pred ccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhc-CCCHHHHHHHHHHhc
Q 003215 194 FKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFDDAFQYVKAAR 272 (838)
Q Consensus 194 ~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~-gmSledA~~~VRs~R 272 (838)
...++.++.+++.|....++ ..+.++++||++++.+|++|||||.+|+|||+||++||||++. .+..++|+.+++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 35678899999999999988 6799999999999999999999999999999999999999994 566667777777777
Q ss_pred CcccCCHHHHHHHHHHHHHH
Q 003215 273 GIADPNMGFACQLLQCQKRV 292 (838)
Q Consensus 273 P~I~PN~GFl~QLle~Ek~L 292 (838)
+. ++....+++..||...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 76 6777777777777654
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.50 E-value=3.1e-14 Score=165.61 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=92.1
Q ss_pred cchhcccCCCCCCCCCCCCCcccCCCCCCCCCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHhhhccCCceEE
Q 003215 302 LLRMYRIAPHSPYDPLHLVPKMLNDPTPSALDSRGAFIVHIPAAIYIWIGKHCESIMERDARGAVCQLVRYERAQGRIVI 381 (838)
Q Consensus 302 ~~RLYRLaphS~ydpl~LVPKmLndPsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~~~i~v 381 (838)
-.||+|+.+..+++ ...+.+++.+++|||.+||||+++..+|+|+|++|+..++++|+.++..|. .++.+.
T Consensus 516 ~t~LFqV~Gt~~~n----~kAveV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-----~~~~~~ 586 (827)
T KOG0443|consen 516 STRLFQVQGTGPSN----TKAVEVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-----RCQSTA 586 (827)
T ss_pred ceEEEEEeccCccc----ceeEeeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----cCChhh
Confidence 35889998866553 344558899999999999999999999999999999999999999999883 467778
Q ss_pred ccCCCCchHhHHHccCCCCccccCCCcccccccccccCCCccccccccc
Q 003215 382 IKEGEEPGYFWDAFSNFLPLMDKSRNGVEIRESTIKMVPGERKVNSYDV 430 (838)
Q Consensus 382 I~EGeEp~eFW~aLGGk~p~~~~~~~~~~~~~~~~~~~~g~rkv~~yn~ 430 (838)
+.||+||++||++||||.+|.-+.. ........||+|.|.|-
T Consensus 587 v~EG~Ep~~FWe~LGGk~~Y~~sk~-------~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 587 VKEGSEPDEFWELLGGKAEYPSSKR-------LEEKPERDPRLFSCSNK 628 (827)
T ss_pred hhcCCCchhhHHHcCCCCCCCcCcc-------ccccCCCCCcEEEEEec
Confidence 9999999999999999999954332 22223445688888775
No 13
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.45 E-value=1.9e-13 Score=121.21 Aligned_cols=74 Identities=23% Similarity=0.488 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHhhhccC-CceEEccCCCCchHhHHHccCC
Q 003215 325 NDPTPSALDSRGAFIVHIPAAIYIWIGKHCESIMERDARGAVCQLVRYERAQ-GRIVIIKEGEEPGYFWDAFSNF 398 (838)
Q Consensus 325 ndPsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~-~~i~vI~EGeEp~eFW~aLGGk 398 (838)
+++..+.|++++||||+.+..||||+|++|+..++..|...|..+.++++.+ .++.+|.||+||.+||..|||.
T Consensus 16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~~ 90 (90)
T smart00262 16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGGW 90 (90)
T ss_pred cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCCC
Confidence 5677889999999999999999999999999999999999999777666544 7888999999999999999983
No 14
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.44 E-value=1.3e-12 Score=133.79 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=96.7
Q ss_pred HHHHHHcCceEEEeccCccCc--ccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHH
Q 003215 171 RDILKQHGITHILNCVGFVCP--EYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSL 248 (838)
Q Consensus 171 ~e~Lk~~GIThILN~a~e~~p--~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTV 248 (838)
...++.++++.|+.+.+...+ .+...++.++.+++.|....++.. +.+.++.++.+.+ ||+|.|||.+|++|+++|
T Consensus 87 ~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~l 164 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTL 164 (225)
T ss_pred HHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHH
Confidence 356789999999998664432 233567999999999988877643 5666666677777 999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Q 003215 249 VIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQK 290 (838)
Q Consensus 249 VIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek 290 (838)
++||||+.++|+..||+..||..||.+-..+.+..-|+++-.
T Consensus 165 iAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 165 IACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999987777777666665544
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.44 E-value=1.3e-13 Score=157.41 Aligned_cols=119 Identities=24% Similarity=0.318 Sum_probs=93.3
Q ss_pred ccchhcccCCCCCCCCCCCCCcccCCCCCCCCCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHhhhccC-Cce
Q 003215 301 SLLRMYRIAPHSPYDPLHLVPKMLNDPTPSALDSRGAFIVHIPAAIYIWIGKHCESIMERDARGAVCQLVRYERAQ-GRI 379 (838)
Q Consensus 301 S~~RLYRLaphS~ydpl~LVPKmLndPsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~-~~i 379 (838)
.+.||||+........+. -|.++..+||+|+||+|+.+..||||.|.++......+||+.|++|+|.||++ ++|
T Consensus 620 h~TRlYrv~~~g~~i~lE-----PVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI 694 (1255)
T KOG0444|consen 620 HLTRLYRVGVNGTAIELE-----PVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEI 694 (1255)
T ss_pred HhhhhheeccccceeEee-----ccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceee
Confidence 477999986543222222 35568899999999999999999999999999999999999999999999999 899
Q ss_pred EEccCCCCchHhHHHccCCCCccccCCCcccccccccccCCCcccc
Q 003215 380 VIIKEGEEPGYFWDAFSNFLPLMDKSRNGVEIRESTIKMVPGERKV 425 (838)
Q Consensus 380 ~vI~EGeEp~eFW~aLGGk~p~~~~~~~~~~~~~~~~~~~~g~rkv 425 (838)
+...||+|+.|||++|||.+.-.++..-+-..+|-.. ..+.+|||
T Consensus 695 ~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p-~qpkLYkV 739 (1255)
T KOG0444|consen 695 ELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVP-EQPKLYKV 739 (1255)
T ss_pred ehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCC-CCcceEEE
Confidence 9999999999999999998766554433333222111 23567777
No 16
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.07 E-value=1.1e-10 Score=99.82 Aligned_cols=68 Identities=25% Similarity=0.444 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHhhhccC-CceEEccCCCCchHhH
Q 003215 325 NDPTPSALDSRGAFIVHIPAAIYIWIGKHCESIMERDARGAVCQLVRYERAQ-GRIVIIKEGEEPGYFW 392 (838)
Q Consensus 325 ndPsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~-~~i~vI~EGeEp~eFW 392 (838)
++.+...|++++||||+.+..||+|+|++|+..++..|...|..+...++.+ ..+.++.||+||..||
T Consensus 8 ~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 8 VPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp ESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred CCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 5567889999999999999999999999999999999999998877455555 6666789999999998
No 17
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.07 E-value=4e-10 Score=112.69 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=63.4
Q ss_pred cCCHHHHHHcCceEEEeccCccC------cc----cccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEE
Q 003215 168 ARDRDILKQHGITHILNCVGFVC------PE----YFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVH 237 (838)
Q Consensus 168 A~d~e~Lk~~GIThILN~a~e~~------p~----~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVH 237 (838)
..|.+.|+..||+.||.++.... +. +...++.++++||.|....++... .++++-|...+++|++|+||
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~-~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAA-WQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHH-HHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHH-HHHHHHHHHHHHcCCEEEEE
Confidence 34677899999999999864321 11 224589999999999998887543 45778888899999999999
Q ss_pred eCCCCChhHHHHHHHHHHhc-CCCHHHHH
Q 003215 238 CCQGVSRSTSLVIAYLMWRE-GQSFDDAF 265 (838)
Q Consensus 238 C~AGVSRSaTVVIAYLMk~~-gmSledA~ 265 (838)
|..|++||+.|++.+|+.-. .++.++|+
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999988654 58999886
No 18
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.02 E-value=3.3e-09 Score=102.11 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=83.9
Q ss_pred cceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccC----ccc-------ccCCcEEEEEEccCCCCCchHHHHHHHH
Q 003215 153 CSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVC----PEY-------FKADFVYRTLWLQDSPSEDITSILYDVF 221 (838)
Q Consensus 153 ~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~----p~~-------~~~d~~Yl~LpI~D~~~eDI~~~f~eai 221 (838)
+.+|.+.||+++.....+.+.|+++||+.|||+..... |.. ...++.|+++|+..... .. ..+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~---~~--~~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI---TP--DDVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC---CH--HHHH
Confidence 35899999999999999999999999999999964321 211 13588999999874321 11 1122
Q ss_pred HHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcc
Q 003215 222 DYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIA 275 (838)
Q Consensus 222 dFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I 275 (838)
.|.+......++||+||.+|. |++.+.+.++. ..|++.+++++..+..--.+
T Consensus 77 ~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~-~~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 77 TFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQA-AEGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHH-HcCCCHHHHHHHHHHcCCCc
Confidence 222222234689999999999 98777766655 47999999999998765443
No 19
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.90 E-value=6.3e-09 Score=103.79 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=75.0
Q ss_pred cceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCccc-----ccCCcEEEEEEccCCCCC--c-hHHHHHHHHHHH
Q 003215 153 CSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCPEY-----FKADFVYRTLWLQDSPSE--D-ITSILYDVFDYF 224 (838)
Q Consensus 153 ~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~~-----~~~d~~Yl~LpI~D~~~e--D-I~~~f~eaidFI 224 (838)
-..|.++||=|+++.+.+...|+++||+.||++..+..+.. ...++.+.++++...... . -...+.++++.|
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999987643221 146889999998654331 1 123455566655
Q ss_pred HHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003215 225 EDVREKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKA 270 (838)
Q Consensus 225 eeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs 270 (838)
.+. .+.+|||||..|..|+++|+++|= +.+||++..|++-.+.
T Consensus 87 ld~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 87 LDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp H-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred hCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 433 357999999999999999999998 6789999999997765
No 20
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.88 E-value=7.8e-09 Score=100.31 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=81.2
Q ss_pred CHHHHHHcCceEEEeccCccCc--ccccCCcEEEEEEccCCCCCchHHHHHHHHHHHH-HH-HhcCCEEEEEeCCCCChh
Q 003215 170 DRDILKQHGITHILNCVGFVCP--EYFKADFVYRTLWLQDSPSEDITSILYDVFDYFE-DV-REKGGRVFVHCCQGVSRS 245 (838)
Q Consensus 170 d~e~Lk~~GIThILN~a~e~~p--~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIe-eA-~~~GGrVLVHC~AGVSRS 245 (838)
-.+.|+++|+|.||.+++.... ....++++.+..+.+|..... .+..++=+..+. .. ..-|..|-|||.+|++|.
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra 111 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA 111 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc
Confidence 3578999999999998764332 223567788777777654332 122222222221 11 134789999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Q 003215 246 TSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKR 291 (838)
Q Consensus 246 aTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~ 291 (838)
+.+|+..|+ ..||.+++|+++||.+|..+ .|. .||.-+|+.
T Consensus 112 pvlvalali-e~gmkyedave~ir~krrga-~n~---kql~~leky 152 (173)
T KOG2836|consen 112 PVLVALALI-EAGMKYEDAVEMIRQKRRGA-INS---KQLLYLEKY 152 (173)
T ss_pred hHHHHHHHH-HccccHHHHHHHHHHHhhcc-ccH---HHHHHHHHh
Confidence 999888888 67999999999999999775 665 566666664
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.87 E-value=1.7e-08 Score=89.00 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred EEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCEEEEEeCCCCChhHHHHHHHHHHhc------CCCHHHHHHHHHH
Q 003215 200 YRTLWLQDSPSEDITSILYDVFDYFEDVRE---KGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFDDAFQYVKA 270 (838)
Q Consensus 200 Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~---~GGrVLVHC~AGVSRSaTVVIAYLMk~~------gmSledA~~~VRs 270 (838)
|+...+.|....+....|.+.++.++.... .+++|+|||.+|++||++++++|+|... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 444555555444433445555555554443 3689999999999999999999999763 3688899999999
Q ss_pred hcCcccCCHHHHHHHH
Q 003215 271 ARGIADPNMGFACQLL 286 (838)
Q Consensus 271 ~RP~I~PN~GFl~QLl 286 (838)
.|+..-.+..+...+.
T Consensus 85 ~r~~~~~~~~q~~~~~ 100 (105)
T smart00012 85 QRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhCCcHHHHHHHH
Confidence 9998877776655543
No 22
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.87 E-value=1.7e-08 Score=89.00 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred EEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCEEEEEeCCCCChhHHHHHHHHHHhc------CCCHHHHHHHHHH
Q 003215 200 YRTLWLQDSPSEDITSILYDVFDYFEDVRE---KGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFDDAFQYVKA 270 (838)
Q Consensus 200 Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~---~GGrVLVHC~AGVSRSaTVVIAYLMk~~------gmSledA~~~VRs 270 (838)
|+...+.|....+....|.+.++.++.... .+++|+|||.+|++||++++++|+|... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 444555555444433445555555554443 3689999999999999999999999763 3688899999999
Q ss_pred hcCcccCCHHHHHHHH
Q 003215 271 ARGIADPNMGFACQLL 286 (838)
Q Consensus 271 ~RP~I~PN~GFl~QLl 286 (838)
.|+..-.+..+...+.
T Consensus 85 ~r~~~~~~~~q~~~~~ 100 (105)
T smart00404 85 QRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhCCcHHHHHHHH
Confidence 9998877776655543
No 23
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=98.83 E-value=3.5e-09 Score=124.28 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=92.4
Q ss_pred hhcccCCCCCCCCCCCCCcccCCCCCCCCCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHhhhccC-CceEEc
Q 003215 304 RMYRIAPHSPYDPLHLVPKMLNDPTPSALDSRGAFIVHIPAAIYIWIGKHCESIMERDARGAVCQLVRYERAQ-GRIVII 382 (838)
Q Consensus 304 RLYRLaphS~ydpl~LVPKmLndPsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~-~~i~vI 382 (838)
|||++.+. +.|....+.-..++||..+||||++...||+|+|.+++..||.+|..++..|+..|+.+ +.|.||
T Consensus 140 rL~~~KGk------r~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vv 213 (827)
T KOG0443|consen 140 RLFHCKGK------RNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVV 213 (827)
T ss_pred EEEEEccc------eeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEe
Confidence 78888764 45666667789999999999999999999999999999999999999999999999988 788888
Q ss_pred cCCCCc-----hHhHHHccCCCC-ccccCCCcccccccccccCCCcccc
Q 003215 383 KEGEEP-----GYFWDAFSNFLP-LMDKSRNGVEIRESTIKMVPGERKV 425 (838)
Q Consensus 383 ~EGeEp-----~eFW~aLGGk~p-~~~~~~~~~~~~~~~~~~~~g~rkv 425 (838)
..|++. .+||..+||.+| +....+.++ .++..+..+.+|||
T Consensus 214 dd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~--~~~~~s~~~kLYkV 260 (827)
T KOG0443|consen 214 DDGKEAADSDLGEFWGFVLGFAPALPKKSPDDD--DEQANSAAAKLYKV 260 (827)
T ss_pred cCcccccCchHHHHHHhhcCcCccCCCCCcchh--hhhhhccccEEEEE
Confidence 866554 359999999888 544444333 35666666677777
No 24
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.58 E-value=3.1e-07 Score=90.95 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=81.8
Q ss_pred CHHHHHHcCceEEEeccCccCcccccCCc---EEEEEEccCCCCC------chHHHHHHHHHHHHHHHhcCCEEEEEeCC
Q 003215 170 DRDILKQHGITHILNCVGFVCPEYFKADF---VYRTLWLQDSPSE------DITSILYDVFDYFEDVREKGGRVFVHCCQ 240 (838)
Q Consensus 170 d~e~Lk~~GIThILN~a~e~~p~~~~~d~---~Yl~LpI~D~~~e------DI~~~f~eaidFIeeA~~~GGrVLVHC~A 240 (838)
-.+...++|-||+|.+..-......+.++ .++.+-+.|...+ .-..+.+.+++|++++-+. ...||||.+
T Consensus 24 ~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~a 102 (172)
T COG5350 24 IAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYA 102 (172)
T ss_pred HHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeecc
Confidence 35666788999999986532111112222 3455555554332 2346789999999998654 899999999
Q ss_pred CCChhHHHH-HHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHH
Q 003215 241 GVSRSTSLV-IAYLMWREGQSFDDAFQYVKAARGIADPNMGFAC 283 (838)
Q Consensus 241 GVSRSaTVV-IAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~ 283 (838)
|||||++++ +|.|.....|+-.++++.+|..+|.+.||...+.
T Consensus 103 GISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 103 GISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred ccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 999996655 4456677899999999999999999999987643
No 25
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.55 E-value=2.6e-07 Score=86.99 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=55.1
Q ss_pred cceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccC-c---cc-------ccCCcEEEEEEccCCCCCchHHHHHHHH
Q 003215 153 CSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVC-P---EY-------FKADFVYRTLWLQDSPSEDITSILYDVF 221 (838)
Q Consensus 153 ~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~-p---~~-------~~~d~~Yl~LpI~D~~~eDI~~~f~eai 221 (838)
+.+|.+.||++++....+.+.|++.||++|||+..... + .. ...++.|.++|+.-. .+. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~---~~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG---AIT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT---T----HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC---CCC--HHHHH
Confidence 46899999999999999999999999999999864321 1 11 134899999999642 222 23344
Q ss_pred HHHHHHHhcCCEEEEEeCCCCChhHHHHH
Q 003215 222 DYFEDVREKGGRVFVHCCQGVSRSTSLVI 250 (838)
Q Consensus 222 dFIeeA~~~GGrVLVHC~AGVSRSaTVVI 250 (838)
.|.+......++||+||..|. |+.++..
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 444444445689999999997 9866643
No 26
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.50 E-value=5e-07 Score=92.64 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=48.7
Q ss_pred cCCEEEEEeCCCCChhHHHHHHHHHHhc-----CCCHHHHHHHHHHhcCcccCCHHHHHHHH
Q 003215 230 KGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFDDAFQYVKAARGIADPNMGFACQLL 286 (838)
Q Consensus 230 ~GGrVLVHC~AGVSRSaTVVIAYLMk~~-----gmSledA~~~VRs~RP~I~PN~GFl~QLl 286 (838)
.+++|+|||.+|+|||++++++++|... ..++.+|+..||+.|+.+-.+..++.-+.
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLY 226 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 3789999999999999999999987553 68999999999999998878876665553
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.42 E-value=9.7e-08 Score=110.37 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCeEEEecC-------CeEEEEeCCCCChHHHHHHHHHHHHHHhhhccCCceEEccCCCCchHhHHHccC
Q 003215 325 NDPTPSALDSRGAFIVHIP-------AAIYIWIGKHCESIMERDARGAVCQLVRYERAQGRIVIIKEGEEPGYFWDAFSN 397 (838)
Q Consensus 325 ndPsasSLnSr~cFIL~~P-------~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~~~i~vI~EGeEp~eFW~aLGG 397 (838)
.++++..|||.+||||++| +.+|+|.|+.|++. +++.+...+.+...-...+++++||+|+++||..+||
T Consensus 1060 in~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~---e~~~a~d~~~~~~d~~~~~~~~~egee~e~fw~~~g~ 1136 (1255)
T KOG0444|consen 1060 INCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPR---EHEFASDLVVRDDDNDFRIVEVQEGEENEEFWKVLGG 1136 (1255)
T ss_pred ecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChH---HHHHHHHhcCccccchhhhhccCCccchHHHhcccCC
Confidence 7899999999999999998 67899999999983 3333333444434344778899999999999999999
Q ss_pred CCCcc
Q 003215 398 FLPLM 402 (838)
Q Consensus 398 k~p~~ 402 (838)
+++|.
T Consensus 1137 ~k~ye 1141 (1255)
T KOG0444|consen 1137 KKKYE 1141 (1255)
T ss_pred CCccc
Confidence 99983
No 28
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.37 E-value=1.7e-06 Score=90.45 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhc----CCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHHHHHH
Q 003215 219 DVFDYFEDVREK----GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFACQLL 286 (838)
Q Consensus 219 eaidFIeeA~~~----GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl~QLl 286 (838)
..++||...... +++|+|||.+|+|||++++++++|.. ...++.+++..||..|+.+-.+..++.-+.
T Consensus 177 ~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~ 253 (258)
T smart00194 177 SILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLY 253 (258)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 344454444332 78999999999999999999998743 468999999999999999888887766553
No 29
>PLN02727 NAD kinase
Probab=98.21 E-value=5.6e-06 Score=100.08 Aligned_cols=100 Identities=11% Similarity=0.241 Sum_probs=75.1
Q ss_pred CcEEEcCccccCCHHHHHHcCceEEEeccCccCc-ccc---------cCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003215 158 EHIYLGGDAVARDRDILKQHGITHILNCVGFVCP-EYF---------KADFVYRTLWLQDSPSEDITSILYDVFDYFEDV 227 (838)
Q Consensus 158 pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p-~~~---------~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA 227 (838)
-.+|.+++....+.+.|.++||+.|||+.++... ..+ ..++.|+++|+.+.....- ..+.++.+++++
T Consensus 261 ~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~- 338 (986)
T PLN02727 261 AAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD- 338 (986)
T ss_pred eeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh-
Confidence 3589999999999999999999999999764431 111 2479999999966544332 224444444433
Q ss_pred HhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCC
Q 003215 228 REKGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 260 (838)
Q Consensus 228 ~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmS 260 (838)
...++||+||..|..|++++++.||.+.-+..
T Consensus 339 -slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 -SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999876654
No 30
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.08 E-value=1.8e-05 Score=90.88 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=66.5
Q ss_pred EEEccCCCCCchHHHHHHHHHHHHHHHhcC---------CEEEEEeCCCCChhHHHHHHHHHHhc-CCCHHHHHHHHHHh
Q 003215 202 TLWLQDSPSEDITSILYDVFDYFEDVREKG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFDDAFQYVKAA 271 (838)
Q Consensus 202 ~LpI~D~~~eDI~~~f~eaidFIeeA~~~G---------GrVLVHC~AGVSRSaTVVIAYLMk~~-gmSledA~~~VRs~ 271 (838)
...+.|+...+-...|.+.++.|+.....+ +.++|||.+|++|+++++++|+|+.. ..++++.+..+|..
T Consensus 428 yTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~q 507 (535)
T PRK15375 428 VKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNS 507 (535)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 334456554333333444455554432221 23479999999999999999999754 47999999999999
Q ss_pred cCc-ccCCHHHHHHHHHHHHHHc
Q 003215 272 RGI-ADPNMGFACQLLQCQKRVH 293 (838)
Q Consensus 272 RP~-I~PN~GFl~QLle~Ek~L~ 293 (838)
|+. +--+..++.+|.+.+.++.
T Consensus 508 Rng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 508 RNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred CCccccccHHHHHHHHHHHHHHh
Confidence 987 7788999999998888764
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.87 E-value=4.7e-05 Score=75.11 Aligned_cols=110 Identities=19% Similarity=0.289 Sum_probs=54.3
Q ss_pred eeCc-EEEcCccc---cCCHHHHHHcCceEEEeccCccC----cccccCCcEEEEEEccCCCCCc---hH----------
Q 003215 156 VAEH-IYLGGDAV---ARDRDILKQHGITHILNCVGFVC----PEYFKADFVYRTLWLQDSPSED---IT---------- 214 (838)
Q Consensus 156 I~pg-LYLGs~~~---A~d~e~Lk~~GIThILN~a~e~~----p~~~~~d~~Yl~LpI~D~~~eD---I~---------- 214 (838)
|.++ ||=++... ..+.+.|.++||+.||++..... |.....++.|+++|+.+..... +.
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 4444 66666543 33678899999999999964322 3345568999999997655441 11
Q ss_pred HHH------------HHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHH
Q 003215 215 SIL------------YDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQ 266 (838)
Q Consensus 215 ~~f------------~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~ 266 (838)
..+ ....++++......+.|||||.+|.-|++.+ +|.|+.-.|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~-~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVV-AALLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHH-HHHHHHHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHH-HHHHHHHcCCCHHHHHH
Confidence 001 1111222223334479999999999999555 45555577888877664
No 32
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.85 E-value=4e-05 Score=77.29 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHh----cCCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHHHHHH
Q 003215 218 YDVFDYFEDVRE----KGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFACQLL 286 (838)
Q Consensus 218 ~eaidFIeeA~~----~GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl~QLl 286 (838)
..+++|++.... ..++|+|||..|++||++++++.+|.. ...++.+++..||..|+.+-.+..++.-+.
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 344555555443 359999999999999999999998754 247999999999999999888877666554
No 33
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.79 E-value=0.00017 Score=82.78 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=95.4
Q ss_pred eeeCcEEEcCccccCC----HHHHHHcCceEEEeccCccCc-ccccCCcEEEEEEccCC--CCCchHHHHHHHHHHHHHH
Q 003215 155 KVAEHIYLGGDAVARD----RDILKQHGITHILNCVGFVCP-EYFKADFVYRTLWLQDS--PSEDITSILYDVFDYFEDV 227 (838)
Q Consensus 155 eI~pgLYLGs~~~A~d----~e~Lk~~GIThILN~a~e~~p-~~~~~d~~Yl~LpI~D~--~~eDI~~~f~eaidFIeeA 227 (838)
.+..+||||.....-. ...-....+..||+|...... ........|+++++... ...+|...|++++.||...
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~ 370 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSH 370 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4677999998775211 111235568899998654432 33456678888888643 3456888999999999999
Q ss_pred Hhc--CCEEEEEeCCCCChhHHHHHHHHHHhcCCCH----------------HHHHHHHHHhcCcccCCHHHHHHHHH
Q 003215 228 REK--GGRVFVHCCQGVSRSTSLVIAYLMWREGQSF----------------DDAFQYVKAARGIADPNMGFACQLLQ 287 (838)
Q Consensus 228 ~~~--GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSl----------------edA~~~VRs~RP~I~PN~GFl~QLle 287 (838)
+.+ +.+|||+|..|.-.|++|++|.|++++.... .+-+.+|-+.+|.++|.++.+++.-.
T Consensus 371 L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNs 448 (451)
T PF04179_consen 371 LSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNS 448 (451)
T ss_pred hcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 888 8999999999999999999999999875321 23445555556666666666666543
No 34
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=97.75 E-value=2.8e-05 Score=69.17 Aligned_cols=72 Identities=25% Similarity=0.550 Sum_probs=60.5
Q ss_pred cccCCCCCCccEEEEeccCCCCCCCCCcEEEEEeccceecCCcceeeccCcccCCCCCCcchhhHHhHHHhcCCCCCcce
Q 003215 740 KFDSSALNSKSAFAIFSPSRDSGKSAARVLYFWVGRSFCHGKSRIQLDNNKELGNIEGSDQNQFGYDILTRMGLPKDTPI 819 (838)
Q Consensus 740 ~~~~~~ldsks~~~~~~p~~~~g~~~~~~ly~WvG~~~~~~~~~~~~~~~~~~~~~~~vdw~qvg~~~l~q~gl~~~~~i 819 (838)
.|..++|||+.+||+-.+ ..||+|+|+.-+- .+.-...+++.+++.++. +..++|
T Consensus 17 ~~~~~~L~s~d~fild~~---------~~iyvW~G~~as~---------------~ek~~A~~~a~~~~~~~~-~~~~~i 71 (90)
T smart00262 17 PFSQGSLNSGDCYILDTG---------SEIYVWVGKKSSQ---------------DEKKKAAELAVELDDTLG-PGPVQV 71 (90)
T ss_pred CCCHHHCCCCCEEEEECC---------CEEEEEECCCCCH---------------HHHHHHHHHHHHHHHhcC-CCCceE
Confidence 467799999999999875 4799999998653 233357789999998888 788999
Q ss_pred eeeccCCChHHHHhhcC
Q 003215 820 KIVKEDEEPREFLALLS 836 (838)
Q Consensus 820 kvvke~ee~~~~l~~l~ 836 (838)
.+|+|++||.+|...|.
T Consensus 72 ~~v~eg~E~~~F~~~f~ 88 (90)
T smart00262 72 RVVDEGKEPPEFWSLFG 88 (90)
T ss_pred EEEeCCCCCHHHHHHhC
Confidence 99999999999999874
No 35
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.00035 Score=67.38 Aligned_cols=111 Identities=21% Similarity=0.228 Sum_probs=75.7
Q ss_pred cceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccC----ccc-------ccCCcEEEEEEccCC-CCCchHHHHHHH
Q 003215 153 CSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVC----PEY-------FKADFVYRTLWLQDS-PSEDITSILYDV 220 (838)
Q Consensus 153 ~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~----p~~-------~~~d~~Yl~LpI~D~-~~eDI~~~f~ea 220 (838)
+.+|.+.|+|+++....|...++.+|++.|||-..... |.. ...++.|.++|+.-. .+++ ++
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~------dV 76 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEA------DV 76 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHH------HH
Confidence 46799999999999999999999999999999653211 111 124789999999542 2222 12
Q ss_pred HHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 003215 221 FDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAA 271 (838)
Q Consensus 221 idFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~ 271 (838)
-.|-+..-+.+|+||.||..|- ||.++=.--. ...||+.+++.++=+.+
T Consensus 77 ~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 77 EAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 2233333355799999999994 7744422222 45689999888776543
No 36
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=97.70 E-value=0.00017 Score=82.29 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=89.7
Q ss_pred cccccceeeCcEEEcCccccCCHHHHHHcCc--------------eEEEeccCccCcccccCCc--EEEEEEccCCCCCc
Q 003215 149 FDKECSKVAEHIYLGGDAVARDRDILKQHGI--------------THILNCVGFVCPEYFKADF--VYRTLWLQDSPSED 212 (838)
Q Consensus 149 ~~~~~SeI~pgLYLGs~~~A~d~e~Lk~~GI--------------ThILN~a~e~~p~~~~~d~--~Yl~LpI~D~~~eD 212 (838)
++.+++=|+++|..-+.++..... +.++.+ =.|.|++++. .|....| ....+++.|.....
T Consensus 11 ~DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er--~yd~~~f~g~V~~~~~~Dh~~P~ 87 (434)
T KOG2283|consen 11 FDLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSER--LYDPSRFHGRVARFGFDDHNPPP 87 (434)
T ss_pred ccccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCccc--cCCccccccceeecCCCCCCCCc
Confidence 344455566666555555433222 333333 2356665422 1222222 34457777877766
Q ss_pred hHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCChhHHHHHHHHHHhcCCC-HHHHHHHHHHhc---C--cccCCHHHHHH
Q 003215 213 ITSILYDVFDYFEDVREK--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FDDAFQYVKAAR---G--IADPNMGFACQ 284 (838)
Q Consensus 213 I~~~f~eaidFIeeA~~~--GGrVLVHC~AGVSRSaTVVIAYLMk~~gmS-ledA~~~VRs~R---P--~I~PN~GFl~Q 284 (838)
|.. +..+++=++..+.. ..-|.|||.+|.+|+++++.||||+..-.. .++|+.+.-.+| . ...--+.+.+.
T Consensus 88 L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RY 166 (434)
T KOG2283|consen 88 LEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRY 166 (434)
T ss_pred HHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHH
Confidence 643 66666667766643 478999999999999999999999886554 999999999999 3 12234556777
Q ss_pred HHHHHHHHcc
Q 003215 285 LLQCQKRVHA 294 (838)
Q Consensus 285 Lle~Ek~L~~ 294 (838)
+..|+..+..
T Consensus 167 v~Y~~~~l~~ 176 (434)
T KOG2283|consen 167 VGYFSRVLLN 176 (434)
T ss_pred HHHHHHHhhc
Confidence 7777774433
No 37
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.63 E-value=0.00011 Score=72.25 Aligned_cols=59 Identities=15% Similarity=0.324 Sum_probs=44.8
Q ss_pred cCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHH
Q 003215 195 KADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMW 255 (838)
Q Consensus 195 ~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk 255 (838)
..++.|++||+.|... +....|++.++||..+ .++..+.+||.+|.+|+.+.++.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~-P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQA-PDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCC-CCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999864 4567799999999888 678999999999999999988888774
No 38
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.53 E-value=0.00033 Score=77.04 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=43.8
Q ss_pred CEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHHHHH
Q 003215 232 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFACQL 285 (838)
Q Consensus 232 GrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl~QL 285 (838)
++|+|||.+|+|||+++|+..++.. ...++.+++..+|..|+.+-.+..++.-+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~ 306 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFC 306 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHH
Confidence 7999999999999999988765432 36899999999999999887776554443
No 39
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.51 E-value=0.00056 Score=74.52 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=42.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHHH
Q 003215 231 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFAC 283 (838)
Q Consensus 231 GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl~ 283 (838)
.++|+|||.+|+|||+++++...+.. ...++.+++..+|..|+.+-.+..++.
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~ 286 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYI 286 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHH
Confidence 37999999999999999988776543 256788999999999997766665443
No 40
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.47 E-value=0.00056 Score=74.87 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=44.2
Q ss_pred CEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHHHHH
Q 003215 232 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFACQL 285 (838)
Q Consensus 232 GrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl~QL 285 (838)
++|+|||.+|+|||+++|+..++.. ...+..+++..+|..|+.+-.+..++.-+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 7999999999999999998875432 46889999999999999887776554444
No 41
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.43 E-value=0.0007 Score=73.87 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=42.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHH
Q 003215 231 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFA 282 (838)
Q Consensus 231 GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl 282 (838)
.++|+|||.+|+|||+++|+...+.. ...++.+++..+|..|+..-.+..++
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY 277 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDY 277 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHH
Confidence 47999999999999999988775543 35789999999999998776665443
No 42
>PHA02738 hypothetical protein; Provisional
Probab=97.22 E-value=0.0017 Score=71.35 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=43.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCHHHHHHH
Q 003215 231 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNMGFACQL 285 (838)
Q Consensus 231 GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~GFl~QL 285 (838)
.++|+|||.+|+|||+++++..++.. ...++.+++..||..|+..-.+..++.-+
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~ 286 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFC 286 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHH
Confidence 36899999999999998877664332 35788999999999999877776655443
No 43
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.12 E-value=0.003 Score=67.04 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=84.7
Q ss_pred cceeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCcc----cc-cCCcEEEEEEccC------CCCCchH-HHHHHH
Q 003215 153 CSKVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCPE----YF-KADFVYRTLWLQD------SPSEDIT-SILYDV 220 (838)
Q Consensus 153 ~SeI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~----~~-~~d~~Yl~LpI~D------~~~eDI~-~~f~ea 220 (838)
.+.|.++||=++++...+..+|+.+++..||.++.+..|+ ++ ...+.+.++-+.- .+..++. ..+..+
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~ 139 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKA 139 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHH
Confidence 3778889999999999999999999999999998765442 22 4578899998853 2333333 335566
Q ss_pred HHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHH
Q 003215 221 FDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYV 268 (838)
Q Consensus 221 idFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~V 268 (838)
++++ ....+..+||||..|--|..+||-..- +..+|++--.+.--
T Consensus 140 l~~l--ld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey 184 (249)
T KOG1572|consen 140 LKVL--LDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEY 184 (249)
T ss_pred HHHH--hcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHH
Confidence 6663 334678999999999999988877665 66789888776643
No 44
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.0032 Score=77.37 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCH
Q 003215 206 QDSPSEDITSILYDVFDYFEDVREK-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIADPNM 279 (838)
Q Consensus 206 ~D~~~eDI~~~f~eaidFIeeA~~~-GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I~PN~ 279 (838)
.|+...+-...|-+-++.|+.++.. +-+|||||.||||||++++++=+|.. .-...-+.++.+|..|-.+-++.
T Consensus 1037 PDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~ 1116 (1144)
T KOG0792|consen 1037 PDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTL 1116 (1144)
T ss_pred ccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccch
Confidence 3444444445565566666666665 56999999999999998887655544 35677799999999998887877
Q ss_pred HHHHHH
Q 003215 280 GFACQL 285 (838)
Q Consensus 280 GFl~QL 285 (838)
.++.-.
T Consensus 1117 ~QYkFV 1122 (1144)
T KOG0792|consen 1117 SQYKFV 1122 (1144)
T ss_pred HHhhHH
Confidence 655433
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=96.84 E-value=0.0021 Score=68.44 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcC-CEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCH
Q 003215 218 YDVFDYFEDVREKG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNM 279 (838)
Q Consensus 218 ~eaidFIeeA~~~G-GrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~ 279 (838)
+....+++-.+..+ ++||+||.+|.-|.+.+++.|++...++.-..+-++++..++....+.
T Consensus 122 e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 122 ERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 33444444444444 999999999999999999999998877777788888887777654444
No 46
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.72 E-value=0.0048 Score=66.58 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=48.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHH---hcCCEEEEEeCCCCChhHHHHHHH-HHHhcCCC-------------HHHHHHH
Q 003215 205 LQDSPSEDITSILYDVFDYFEDVR---EKGGRVFVHCCQGVSRSTSLVIAY-LMWREGQS-------------FDDAFQY 267 (838)
Q Consensus 205 I~D~~~eDI~~~f~eaidFIeeA~---~~GGrVLVHC~AGVSRSaTVVIAY-LMk~~gmS-------------ledA~~~ 267 (838)
+.|....++.+ ..++|+-.. -++++++|||.||+||++|+++.- ||....-+ ..+.+..
T Consensus 193 W~D~~~p~i~s----l~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDIRS----LTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCHHH----HHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 45766666544 455555444 367999999999999999987766 45433222 2345566
Q ss_pred HHHhcCcccCCHHHHHHH
Q 003215 268 VKAARGIADPNMGFACQL 285 (838)
Q Consensus 268 VRs~RP~I~PN~GFl~QL 285 (838)
+|+.|-.+--|..++..|
T Consensus 269 LRsQRmkmVQn~~Qf~fl 286 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFL 286 (302)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 677775444555444444
No 47
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=96.67 E-value=0.0027 Score=71.76 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=80.3
Q ss_pred ceEEEeccCcc----CcccccCCcEEEEEEccCC---CCCchH-HHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHH
Q 003215 179 ITHILNCVGFV----CPEYFKADFVYRTLWLQDS---PSEDIT-SILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVI 250 (838)
Q Consensus 179 IThILN~a~e~----~p~~~~~d~~Yl~LpI~D~---~~eDI~-~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVI 250 (838)
|.-+|+++.-. .+.....++.|+.+...-. +..... .+...+-.|+......+.=|+|||.+|.+|..-++.
T Consensus 64 vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~ 143 (393)
T KOG2386|consen 64 VGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLIC 143 (393)
T ss_pred EEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeee
Confidence 55566654211 1233345666766655322 222233 334555567777778889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHc
Q 003215 251 AYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVH 293 (838)
Q Consensus 251 AYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L~ 293 (838)
+|||...+|+..+|++.+...|+-..--..++..|...+....
T Consensus 144 ~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 144 AYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred eeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 9999999999999999999999766556666677765555444
No 48
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=96.66 E-value=0.0012 Score=77.67 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCCcccCCCCCCCCCCCCeEEEecCCeEEEEeCCCCChHHHHHHHHHHHHHHhhhccCC---ceEEccCCCCc----hHh
Q 003215 319 LVPKMLNDPTPSALDSRGAFIVHIPAAIYIWIGKHCESIMERDARGAVCQLVRYERAQG---RIVIIKEGEEP----GYF 391 (838)
Q Consensus 319 LVPKmLndPsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr~~~---~i~vI~EGeEp----~eF 391 (838)
.|-.-+|+|-+++||+.+||||..|..+|.|+|.-++-.|+.+|..++-.|+-...-++ .|++|.+-.-. ..|
T Consensus 234 hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~ivtit~~~~~t~~~~~F 313 (919)
T KOG0445|consen 234 HVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATYIVTITEINTHTHAAKDF 313 (919)
T ss_pred cceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEEEEEEeccchhHHHHHHH
Confidence 35556899999999999999999999999999999999999999999886653332332 34455552211 239
Q ss_pred HHHccCCCCccccC
Q 003215 392 WDAFSNFLPLMDKS 405 (838)
Q Consensus 392 W~aLGGk~p~~~~~ 405 (838)
|..|||+..+....
T Consensus 314 w~llg~qs~~~~~g 327 (919)
T KOG0445|consen 314 WKLLGGQSSYQSAG 327 (919)
T ss_pred HHHhCCccchhhcC
Confidence 99999998776544
No 49
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=96.63 E-value=0.00091 Score=57.16 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=53.8
Q ss_pred ccccccccCCCCCCccEEEEeccCCCCCCCCCcEEEEEeccceecCCcceeeccCcccCCCCCCcchhhHHhHHHhcCCC
Q 003215 735 FERVGKFDSSALNSKSAFAIFSPSRDSGKSAARVLYFWVGRSFCHGKSRIQLDNNKELGNIEGSDQNQFGYDILTRMGLP 814 (838)
Q Consensus 735 ~ek~~~~~~~~ldsks~~~~~~p~~~~g~~~~~~ly~WvG~~~~~~~~~~~~~~~~~~~~~~~vdw~qvg~~~l~q~gl~ 814 (838)
+.+...++.+.|++..+||+-... .+|+|+|+.-+. .+..--.++..+++ ....+
T Consensus 4 ~~~~~~~s~~~L~s~~~yIld~~~---------~i~vW~G~~~~~---------------~e~~~a~~~a~~~~-~~~~~ 58 (76)
T PF00626_consen 4 RPEQVPLSQSSLNSDDCYILDCGY---------EIFVWVGKKSSP---------------EEKAFAAQLAQELL-SEERP 58 (76)
T ss_dssp EEEEESSSGGGEETTSEEEEEESS---------EEEEEEHTTSHH---------------HHHHHHHHHHHHHH-HHHTT
T ss_pred cCCcCCCCHHHcCCCCEEEEEeCC---------CcEEEEeccCCH---------------HHHHHHHHHHHHhh-hhcCC
Confidence 345667889999999999998776 999999998322 11222234555555 34567
Q ss_pred CCcceeeeccCCChHHHH
Q 003215 815 KDTPIKIVKEDEEPREFL 832 (838)
Q Consensus 815 ~~~~ikvvke~ee~~~~l 832 (838)
....|.++.|+.||..||
T Consensus 59 ~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 59 PLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp TTSEEEEEETTHHHHHHH
T ss_pred CCCEEEEecCCCCChHHC
Confidence 788888889999999996
No 50
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.37 E-value=0.0059 Score=69.49 Aligned_cols=107 Identities=19% Similarity=0.329 Sum_probs=64.8
Q ss_pred CHHHHHHcCceEEEeccCccCcccc---------------cCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH------H
Q 003215 170 DRDILKQHGITHILNCVGFVCPEYF---------------KADFVYRTLWLQDSPSEDITSILYDVFDYFEDV------R 228 (838)
Q Consensus 170 d~e~Lk~~GIThILN~a~e~~p~~~---------------~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA------~ 228 (838)
+...++.+|+-+|-||.+.....|. ..-++|+.+-+.|+.... . -..+++|+++. +
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~-d--Pg~vLnFLe~V~~rq~~l 448 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPS-D--PGGVLNFLEEVNHRQESL 448 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcC-C--ccHHHHHHHHhhhhhccc
Confidence 3456778888888776442222221 112455555556654321 0 11234455543 3
Q ss_pred hcCCEEEEEeCCCCChhHHHHH-HHHHHh-------cCCCHHHHHHHHHHhcCcccCCH
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVI-AYLMWR-------EGQSFDDAFQYVKAARGIADPNM 279 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVI-AYLMk~-------~gmSledA~~~VRs~RP~I~PN~ 279 (838)
..-|.|.|||.|||+|++|+++ -.||-. +.++....+++||..|..+--..
T Consensus 449 ~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTE 507 (600)
T KOG0790|consen 449 MDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTE 507 (600)
T ss_pred cccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhH
Confidence 3457999999999999988654 444432 45788999999999997554333
No 51
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.13 E-value=0.025 Score=62.81 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHhcCCEEEEEeCCCCChhHHHHHHH-HHHh--c---CCCHHHHHHHHHHhcCcccCCHHHHHHH
Q 003215 227 VREKGGRVFVHCCQGVSRSTSLVIAY-LMWR--E---GQSFDDAFQYVKAARGIADPNMGFACQL 285 (838)
Q Consensus 227 A~~~GGrVLVHC~AGVSRSaTVVIAY-LMk~--~---gmSledA~~~VRs~RP~I~PN~GFl~QL 285 (838)
.....+++.|||.+|+||++|+++.. .|.. . .....+.+..+|..|+.+-.+..++.-+
T Consensus 295 ~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~ 359 (415)
T KOG0789|consen 295 LRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFI 359 (415)
T ss_pred hcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHH
Confidence 33346899999999999999999655 3333 1 2458888888999998766666555333
No 52
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.05 E-value=0.063 Score=60.27 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=47.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHH-HHHhcC----CCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Q 003215 231 GGRVFVHCCQGVSRSTSLVIAY-LMWREG----QSFDDAFQYVKAARGIADPNMGFACQLLQCQKRV 292 (838)
Q Consensus 231 GGrVLVHC~AGVSRSaTVVIAY-LMk~~g----mSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L 292 (838)
.+.++|||.||++|++|+++.- |++..+ .+.-..+..+|..|+.+-+|..++.-|.++-...
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 6899999999999999987766 444333 3455666677788898889998888887765443
No 53
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=94.49 E-value=0.065 Score=63.75 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCeEEEecC--CeEEEEeCCCCChHHHHHHHHHHHHHHhhhc---cCCceEEccCCCCchHhHHHccCCC
Q 003215 325 NDPTPSALDSRGAFIVHIP--AAIYIWIGKHCESIMERDARGAVCQLVRYER---AQGRIVIIKEGEEPGYFWDAFSNFL 399 (838)
Q Consensus 325 ndPsasSLnSr~cFIL~~P--~~IYVWiGk~~~~~e~~~Ar~aa~~i~kYEr---~~~~i~vI~EGeEp~eFW~aLGGk~ 399 (838)
++-..+.|-||-.+|+.-. ..+|+|.|.++-..-+.-+..|+..+.+--- ....+..|.||.||..||++||-|.
T Consensus 663 v~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs~~~~~~~alGrkd 742 (919)
T KOG0445|consen 663 VACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGSEPLGFWDALGRKD 742 (919)
T ss_pred hhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCCCchhhhhhccccc
Confidence 4456788999999998755 4599999999988888888888875533211 1146667999999999999999764
No 54
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.12 E-value=0.18 Score=50.13 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=54.5
Q ss_pred eeeCcEEEcCccccCCHHHHHHcCceEEEeccCccCcccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc---C
Q 003215 155 KVAEHIYLGGDAVARDRDILKQHGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREK---G 231 (838)
Q Consensus 155 eI~pgLYLGs~~~A~d~e~Lk~~GIThILN~a~e~~p~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~---G 231 (838)
-|.+.||.+.... ..+...=+|-+++-+ ++.|..+ -.|.+.-+|.. +..-+..+++.++. .
T Consensus 3 ~i~drLyf~~~~~-----~p~~~~~~~yF~iD~---------~l~Y~~F-~~DFGPlnL~~-lyrfc~~l~~~L~~~~~~ 66 (141)
T PF14671_consen 3 IIPDRLYFASLRN-----KPKSTPNTHYFSIDD---------ELVYENF-YADFGPLNLAQ-LYRFCCKLNKKLKSPELK 66 (141)
T ss_dssp -SSSSEEEEE-SS---------BTTEEEEE-TT---------TS----S-SS------HHH-HHHHHHHHHHHHH-GGGT
T ss_pred CCCCcEEEEEeCC-----CCCCCCCcEEEEeCC---------eEEEecc-cCcCCCccHHH-HHHHHHHHHHHHcCHHhc
Confidence 3667788887654 233334556666422 2333333 23555556544 55555556655544 6
Q ss_pred CEEEEEeCCCCCh----hHHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 003215 232 GRVFVHCCQGVSR----STSLVIAYLMWREGQSFDDAFQYVKAAR 272 (838)
Q Consensus 232 GrVLVHC~AGVSR----SaTVVIAYLMk~~gmSledA~~~VRs~R 272 (838)
++.+|||...-.+ ++.++.||+|.+.+|+.++|++.+...-
T Consensus 67 ~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 67 KKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp TSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 7888999875433 4888999999999999999999997664
No 55
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=0.72 Score=56.80 Aligned_cols=64 Identities=19% Similarity=0.465 Sum_probs=48.0
Q ss_pred CCCCCCCCCCeEEEecCCeEEEEeCCCCChHHH---------------------------HHHHHHHHHHHhhhccCCce
Q 003215 327 PTPSALDSRGAFIVHIPAAIYIWIGKHCESIME---------------------------RDARGAVCQLVRYERAQGRI 379 (838)
Q Consensus 327 PsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~---------------------------~~Ar~aa~~i~kYEr~~~~i 379 (838)
.+...|...+||+|..+..+|+|+|+.++.... +++|.+...|++.....-.+
T Consensus 883 aS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~~r~~~l~v 962 (1007)
T KOG1984|consen 883 ASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRRQRSSELPV 962 (1007)
T ss_pred cchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHhcccccccc
Confidence 355679999999999999999999999987644 34555555555522222578
Q ss_pred EEccCCCCchH
Q 003215 380 VIIKEGEEPGY 390 (838)
Q Consensus 380 ~vI~EGeEp~e 390 (838)
+++++|+++.+
T Consensus 963 ~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 963 VLVKQGLDGSE 973 (1007)
T ss_pred EEEecCCCchh
Confidence 88999999875
No 56
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=89.77 E-value=0.66 Score=56.47 Aligned_cols=62 Identities=23% Similarity=0.527 Sum_probs=47.1
Q ss_pred CCCCCCCCCeEEEecCCeEEEEeCCCCChHHHH---------------------------HHHHHHHHHHh-hhccCCce
Q 003215 328 TPSALDSRGAFIVHIPAAIYIWIGKHCESIMER---------------------------DARGAVCQLVR-YERAQGRI 379 (838)
Q Consensus 328 sasSLnSr~cFIL~~P~~IYVWiGk~~~~~e~~---------------------------~Ar~aa~~i~k-YEr~~~~i 379 (838)
..+.|++.|+|+|+++..||+|+|+.|++...+ .++.+.+.++. |..-.-++
T Consensus 739 T~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl~l 818 (861)
T COG5028 739 TSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPL 818 (861)
T ss_pred hHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCccce
Confidence 345799999999999999999999999876543 34555566655 33333678
Q ss_pred EEccCCCCch
Q 003215 380 VIIKEGEEPG 389 (838)
Q Consensus 380 ~vI~EGeEp~ 389 (838)
++|++|.++.
T Consensus 819 vlVR~~~d~s 828 (861)
T COG5028 819 VLVRGGGDPS 828 (861)
T ss_pred EEEecCCCcc
Confidence 8899998887
No 57
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=89.18 E-value=1.9 Score=54.64 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=11.8
Q ss_pred cchHHHHHHHhCCccCCcC
Q 003215 430 VDYEIFRKAIMGGFVPPFS 448 (838)
Q Consensus 430 ~d~~~~~~~~~~~~~~~~~ 448 (838)
+|-|+..++|..=. |-+.
T Consensus 1418 ld~e~l~~~~~~~~-p~~~ 1435 (1605)
T KOG0260|consen 1418 LDAEKLKKGIEIPM-PWSN 1435 (1605)
T ss_pred ccHHhhhccCccCC-cccc
Confidence 57788888877653 4443
No 58
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.92 E-value=0.81 Score=57.63 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhc----CCEEEEEeCCCCChhHHHHHHHHH-----HhcCCCHHHHHHHHHHhcCc
Q 003215 218 YDVFDYFEDVREK----GGRVFVHCCQGVSRSTSLVIAYLM-----WREGQSFDDAFQYVKAARGI 274 (838)
Q Consensus 218 ~eaidFIeeA~~~----GGrVLVHC~AGVSRSaTVVIAYLM-----k~~gmSledA~~~VRs~RP~ 274 (838)
...+.|+++.+.- .|+++|||.||+||++++++-=-| .....+...-...+|..|..
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 3456788877654 399999999999999986543222 22234444455555555553
No 59
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.90 E-value=1.9 Score=52.20 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=44.1
Q ss_pred cCCEEEEEeCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHH
Q 003215 230 KGGRVFVHCCQGVSRSTSLVIAYLMWR------EGQSFDDAFQYVKAARGIA-DPNMGFACQLLQCQKR 291 (838)
Q Consensus 230 ~GGrVLVHC~AGVSRSaTVVIAYLMk~------~gmSledA~~~VRs~RP~I-~PN~GFl~QLle~Ek~ 291 (838)
+...|+|||..|-+|+++-|+-=|+.. ..++....++++|..||.+ .-...|...|...-++
T Consensus 926 RScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeE 994 (1004)
T KOG0793|consen 926 RSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEE 994 (1004)
T ss_pred CCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHH
Confidence 467999999999999988655443322 3567888999999999754 4455666666544433
No 60
>PTZ00395 Sec24-related protein; Provisional
Probab=82.56 E-value=2.9 Score=54.05 Aligned_cols=32 Identities=16% Similarity=0.470 Sum_probs=28.3
Q ss_pred CCCCCCCCCCeEEEecCCeEEEEeCCCCChHH
Q 003215 327 PTPSALDSRGAFIVHIPAAIYIWIGKHCESIM 358 (838)
Q Consensus 327 PsasSLnSr~cFIL~~P~~IYVWiGk~~~~~e 358 (838)
.++..|.+.|+|+|+.+..||+|+|+.+++..
T Consensus 1436 LS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1436 SSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred chHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 45667899999999999999999999998654
No 61
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.75 E-value=5.6 Score=49.18 Aligned_cols=30 Identities=20% Similarity=0.698 Sum_probs=26.9
Q ss_pred CCCCCCCCCeEEEecCCeEEEEeCCCCChH
Q 003215 328 TPSALDSRGAFIVHIPAAIYIWIGKHCESI 357 (838)
Q Consensus 328 sasSLnSr~cFIL~~P~~IYVWiGk~~~~~ 357 (838)
.+..|+.++.|+++.+..+|+|+|+.|++.
T Consensus 766 tae~l~~~GlyL~D~g~~lfl~vg~~a~P~ 795 (887)
T KOG1985|consen 766 TAELLSRRGLYLMDTGTTLFLWVGSNADPS 795 (887)
T ss_pred HHHHhccCceEEEecCcEEEEEEcCCCCcc
Confidence 456799999999999999999999999864
No 62
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=75.25 E-value=4.7 Score=51.24 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcc
Q 003215 231 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFDDAFQYVKAARGIA 275 (838)
Q Consensus 231 GGrVLVHC~AGVSRSaTVVIAYLMk~-----~gmSledA~~~VRs~RP~I 275 (838)
.+++.|||.+|++|+.+++++-++.. .-++.-+|.+-+|..||.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 58999999999999987776654432 2356667777888888765
No 63
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=9.5 Score=45.93 Aligned_cols=40 Identities=33% Similarity=0.541 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHH-HHHH
Q 003215 215 SILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVI-AYLM 254 (838)
Q Consensus 215 ~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVI-AYLM 254 (838)
.+|..++...+..-..+..|||||.-|=-|++-++. |-||
T Consensus 358 ~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 358 SLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 345556666666667788999999999999987664 5566
No 64
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=54.14 E-value=41 Score=38.16 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=18.7
Q ss_pred HHHHHhcCCEEEEEeCCCCChhHHHHH
Q 003215 224 FEDVREKGGRVFVHCCQGVSRSTSLVI 250 (838)
Q Consensus 224 IeeA~~~GGrVLVHC~AGVSRSaTVVI 250 (838)
++....+|..|||||..|-.|++-|+.
T Consensus 224 ~~~l~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 224 ADLLHDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HHHHHTT--EEEEECTTSSSHHHHHHH
T ss_pred HHHhhccCceEEEEcCCCCcccHHHHH
Confidence 333336889999999999999865543
No 65
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=51.75 E-value=43 Score=30.07 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=18.7
Q ss_pred hcCCEEEEEeCCCCChhHHHHHHHHHHhcCC
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 259 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gm 259 (838)
.++..|+|||..| .||... +.+| +..|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4678999999988 688543 3344 44454
No 66
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=47.09 E-value=45 Score=29.79 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=37.5
Q ss_pred HHHHcCceEEEeccCccCccccc-CCcE-EEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHH
Q 003215 173 ILKQHGITHILNCVGFVCPEYFK-ADFV-YRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVI 250 (838)
Q Consensus 173 ~Lk~~GIThILN~a~e~~p~~~~-~d~~-Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVI 250 (838)
.+...+-..||++... .++.. .-.. ..++|+.+...... ... +.+...|+|+|..|. || ..++
T Consensus 14 ~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~---------~~~--~~~~~~ivv~C~~G~-rS-~~aa 78 (110)
T COG0607 14 LLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAEN---------LLE--LPDDDPIVVYCASGV-RS-AAAA 78 (110)
T ss_pred HhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhc---------ccc--cCCCCeEEEEeCCCC-Ch-HHHH
Confidence 3445556788887543 22222 1122 55566655433110 000 567899999999996 77 4455
Q ss_pred HHHHH
Q 003215 251 AYLMW 255 (838)
Q Consensus 251 AYLMk 255 (838)
.+|..
T Consensus 79 ~~L~~ 83 (110)
T COG0607 79 AALKL 83 (110)
T ss_pred HHHHH
Confidence 55553
No 67
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=41.32 E-value=38 Score=40.91 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=25.9
Q ss_pred HHHHHHHHHh-cCCEEEEEeCCCCChhHHHHH-HHHH
Q 003215 220 VFDYFEDVRE-KGGRVFVHCCQGVSRSTSLVI-AYLM 254 (838)
Q Consensus 220 aidFIeeA~~-~GGrVLVHC~AGVSRSaTVVI-AYLM 254 (838)
+..+|.+++. +|..|||||.-|.-|++-|+. |=||
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQll 368 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLL 368 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHH
Confidence 3446666666 568999999999999976654 4455
No 68
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=38.95 E-value=60 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=17.6
Q ss_pred cCCEEEEEeCCCCChhHHHHHHHHHHhcCC
Q 003215 230 KGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 259 (838)
Q Consensus 230 ~GGrVLVHC~AGVSRSaTVVIAYLMk~~gm 259 (838)
++..|+|||..|. ||.. ++ .+++..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~-~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GA-QSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HH-HHHHHCCC
Confidence 4679999999996 7733 33 33345554
No 69
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=38.33 E-value=46 Score=27.83 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q 003215 246 TSLVIAYLMWREGQSFDDAFQYVKAA 271 (838)
Q Consensus 246 aTVVIAYLMk~~gmSledA~~~VRs~ 271 (838)
..-+.+.||..+|++.++||++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45678899999999999999999865
No 70
>PLN02160 thiosulfate sulfurtransferase
Probab=36.52 E-value=52 Score=32.09 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=19.9
Q ss_pred HhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCC
Q 003215 228 REKGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 260 (838)
Q Consensus 228 ~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmS 260 (838)
+..+.+|+|||..| .||... |.++...|.+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 35678999999999 588644 3333444543
No 71
>smart00400 ZnF_CHCC zinc finger.
Probab=34.44 E-value=43 Score=27.77 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=24.1
Q ss_pred EEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHH
Q 003215 235 FVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYV 268 (838)
Q Consensus 235 LVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~V 268 (838)
..||.+ -++.. =+|.++|+.+++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gG-d~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGG-NVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCC-CHHHHHHHHHCcCHHHHHHHh
Confidence 477774 23443 358899999999999999876
No 72
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=33.53 E-value=83 Score=33.11 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=36.7
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVRE----KGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 265 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~~----~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~ 265 (838)
..+.+......+..++++.+. .+++|||-|++|+-|. +++|++ ++++++..
T Consensus 148 gGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~~ 202 (228)
T PRK14116 148 GGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDIM 202 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHHH
Confidence 457788888888888877542 4689999999998874 444544 67766543
No 73
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=31.90 E-value=99 Score=27.76 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=18.0
Q ss_pred cCCEEEEEeCCCCChhHHHHHHHHHHhcCCC
Q 003215 230 KGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 260 (838)
Q Consensus 230 ~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmS 260 (838)
++.+|+|+|..| .||... +.+|. ..|..
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHH-HcCCc
Confidence 478999999998 577443 33333 45543
No 74
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=31.86 E-value=73 Score=29.47 Aligned_cols=31 Identities=16% Similarity=-0.064 Sum_probs=20.9
Q ss_pred HhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCC
Q 003215 228 REKGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 260 (838)
Q Consensus 228 ~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmS 260 (838)
+..+..|+|+|..| ++.++.++.+|. ..|+.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 45678999999998 566666555444 44543
No 75
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=31.38 E-value=2.2e+02 Score=25.17 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=41.4
Q ss_pred HcCceEEEeccCccCcccccCCc-EEEEEEccCC---CCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHH--
Q 003215 176 QHGITHILNCVGFVCPEYFKADF-VYRTLWLQDS---PSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLV-- 249 (838)
Q Consensus 176 ~~GIThILN~a~e~~p~~~~~d~-~Yl~LpI~D~---~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVV-- 249 (838)
..+=..||+|.... .+....+ .-.++++... ...-....+............++..|+|+|..|. |+...+
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44667888875422 1111111 1255666332 2222333444444444455567789999996665 443332
Q ss_pred -HHHHHHhcCCC
Q 003215 250 -IAYLMWREGQS 260 (838)
Q Consensus 250 -IAYLMk~~gmS 260 (838)
++|++...|..
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 34445555543
No 76
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=28.73 E-value=1.1e+02 Score=32.23 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=36.3
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVRE----KGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 265 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~~----~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~ 265 (838)
..+.+......+.++|++.+. .+++|||-|++|+-|. +++|++ ++++++..
T Consensus 147 ~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~---ll~~~l---~~~~~~~~ 201 (227)
T PRK14118 147 DAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA---LAKHIE---GISDADIM 201 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHh
Confidence 357788888888888877543 4689999999998764 334444 66766544
No 77
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.42 E-value=57 Score=41.25 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=43.3
Q ss_pred CCCCCCccEEEEeccCCCCCCCCCcEEEEEeccceecCC--------cceeeccCcc-cCCCCCCcchhhHHhHH--Hhc
Q 003215 743 SSALNSKSAFAIFSPSRDSGKSAARVLYFWVGRSFCHGK--------SRIQLDNNKE-LGNIEGSDQNQFGYDIL--TRM 811 (838)
Q Consensus 743 ~~~ldsks~~~~~~p~~~~g~~~~~~ly~WvG~~~~~~~--------~~~~~~~~~~-~~~~~~vdw~qvg~~~l--~q~ 811 (838)
.+.|-..-+|+| +++..+|+|||.+.+-+= +-.++++-++ +-+.++..=.|| .+++ .|+
T Consensus 885 ~e~l~negiYll---------~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~-r~~i~~i~~ 954 (1007)
T KOG1984|consen 885 SEFLSNEGIYLL---------DNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKV-RNVISLIRR 954 (1007)
T ss_pred hhhccCCceEEE---------ecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHH-HHHHHHHHh
Confidence 344555556665 457889999999987542 2233333321 112222222222 2221 233
Q ss_pred CCCCCcceeeeccCCChHH
Q 003215 812 GLPKDTPIKIVKEDEEPRE 830 (838)
Q Consensus 812 gl~~~~~ikvvke~ee~~~ 830 (838)
==...++|++||+++++.+
T Consensus 955 ~r~~~l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 955 QRSSELPVVLVKQGLDGSE 973 (1007)
T ss_pred ccccccccEEEecCCCchh
Confidence 3345899999999999873
No 78
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.86 E-value=1.1e+02 Score=31.92 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHH
Q 003215 213 ITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLM 254 (838)
Q Consensus 213 I~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLM 254 (838)
+...+.++++.|.+++.++++|+|. |+|+|++++.-+-+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 3456788888898999999999886 88899887665544
No 79
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=26.86 E-value=1.1e+02 Score=31.98 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=36.7
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVRE----KGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 265 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~~----~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~ 265 (838)
..+.+......+..++++.+. .+++|||-|++|+-|. +++|++ +++.++..
T Consensus 148 ~GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~---l~~~~~---~~~~~~~~ 202 (228)
T PRK14119 148 YSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRA---LIKYLE---DVSDEDII 202 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHH---HHHHHh---CCCHHHHh
Confidence 367788888889998887543 4678999999998874 455555 56655443
No 80
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=25.83 E-value=1.3e+02 Score=31.84 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHHHHHHH-h---cCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVR-E---KGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQ 266 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~-~---~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~ 266 (838)
..+.+......+..|+++.+ . .++.|||-|+.|+-|. +++|++ ++++.+.+.
T Consensus 148 ~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~---ll~~~l---g~~~~~~~~ 203 (230)
T PRK14117 148 DAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRA---LVKHIK---GLSDDEIMD 203 (230)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHH---HHHHHh---CcCHHHHhh
Confidence 45778888899999998754 2 3578999999998774 344444 666665543
No 81
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=25.70 E-value=82 Score=28.17 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=18.1
Q ss_pred hcCCEEEEEeCCCCChhHHHHHHHHHHhcCC
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 259 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gm 259 (838)
..+.+|+|||..|. ||.. ++.+ |+..|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~-L~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAEL-LAERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHH-HHHcCc
Confidence 46789999999995 7733 3333 344454
No 82
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.49 E-value=1.3e+02 Score=28.59 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=20.9
Q ss_pred HhcCCEEEEEeCCCCChhHHHHHHHHHHhcCC
Q 003215 228 REKGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 259 (838)
Q Consensus 228 ~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gm 259 (838)
+.++..|+|+|..|-.||..++ ++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4567899999986556776443 67766665
No 83
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=24.78 E-value=1.3e+02 Score=30.38 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=21.1
Q ss_pred hcCCEEEEEeCCCCChhHHHHHHHHHHhcCC
Q 003215 229 EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 259 (838)
Q Consensus 229 ~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gm 259 (838)
.++.+|+|+|..|..||.. ++++++..|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 4678999999998877765 4555555554
No 84
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=24.28 E-value=1.4e+02 Score=31.59 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=35.2
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVR----EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 265 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~----~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~ 265 (838)
..+...+....+..+|++.+ ..+++|||-|+.|+-|. ++++++ +++.++++
T Consensus 135 ~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vir~---ll~~l~---~~~~~~~~ 189 (236)
T PTZ00123 135 NTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRA---LVKYLD---KMSEEDIL 189 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHh
Confidence 35777888888888887643 34679999999998763 344444 56665544
No 85
>PRK01112 phosphoglyceromutase; Provisional
Probab=24.12 E-value=1.5e+02 Score=31.51 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVR----EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQY 267 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~----~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~ 267 (838)
..+.+.++...+..+|++.+ ..+++|||-|++|+-|+ ++++|. +++.++++.+
T Consensus 147 ~GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~---l~~~ll---~~~~~~~~~~ 203 (228)
T PRK01112 147 QGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRS---LIMDLE---KLSEEEVLSL 203 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHhhc
Confidence 45777787888888887643 25689999999998874 334444 6777766643
No 86
>PRK01415 hypothetical protein; Validated
Probab=23.21 E-value=1.4e+02 Score=32.54 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=18.4
Q ss_pred HhcCCEEEEEeCCCCChhHHHHHHHHH
Q 003215 228 REKGGRVFVHCCQGVSRSTSLVIAYLM 254 (838)
Q Consensus 228 ~~~GGrVLVHC~AGVSRSaTVVIAYLM 254 (838)
..++.+|+++|..|+ || ..+++||.
T Consensus 168 ~~k~k~Iv~yCtgGi-Rs-~kAa~~L~ 192 (247)
T PRK01415 168 LLKGKKIAMVCTGGI-RC-EKSTSLLK 192 (247)
T ss_pred hcCCCeEEEECCCCh-HH-HHHHHHHH
Confidence 356789999999995 76 45556665
No 87
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=23.07 E-value=97 Score=30.72 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeC
Q 003215 216 ILYDVFDYFEDVREKGGRVFVHCC 239 (838)
Q Consensus 216 ~f~eaidFIeeA~~~GGrVLVHC~ 239 (838)
.+.-++..++++.++|.+|+|+|.
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~ 37 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCE 37 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcC
Confidence 466789999999999999999994
No 88
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=21.88 E-value=83 Score=31.93 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEeC
Q 003215 218 YDVFDYFEDVREKGGRVFVHCC 239 (838)
Q Consensus 218 ~eaidFIeeA~~~GGrVLVHC~ 239 (838)
..++.+++++...|.||||+|.
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC
Confidence 3788999999999999999994
No 89
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=21.75 E-value=1.8e+02 Score=29.59 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=33.4
Q ss_pred CCchHHHHHHHHHHHHHHHh-------cCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHH
Q 003215 210 SEDITSILYDVFDYFEDVRE-------KGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 265 (838)
Q Consensus 210 ~eDI~~~f~eaidFIeeA~~-------~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~ 265 (838)
.+.+......+..+|++..+ .++.|||-|++|+-|. ++++++ +++++...
T Consensus 116 gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~---ll~~~l---g~~~~~~~ 172 (204)
T TIGR03848 116 GESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKS---VLADAL---GMHLDLFQ 172 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHH---HHHHHh---CCCHHHhh
Confidence 56677777778888776543 3568999999998763 233433 66665443
No 90
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.09 E-value=2e+02 Score=30.16 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHH
Q 003215 211 EDITSILYDVFDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMW 255 (838)
Q Consensus 211 eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk 255 (838)
..+.+.+.++.+-+.+++.+|++|+|. |+|+|+.++..+-++
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 355667788888888889999999886 888897776665553
No 91
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=20.88 E-value=1.4e+02 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=18.7
Q ss_pred HhcCCEEEEEeCCCCChhHHHHHHHHHHhcCC
Q 003215 228 REKGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 259 (838)
Q Consensus 228 ~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gm 259 (838)
.....+|+|+|..| .||..++ .+++..|.
T Consensus 61 ~~~~~~ivv~C~~G-~rs~~aa--~~L~~~G~ 89 (117)
T cd01522 61 VGKDRPVLLLCRSG-NRSIAAA--EAAAQAGF 89 (117)
T ss_pred CCCCCeEEEEcCCC-ccHHHHH--HHHHHCCC
Confidence 35678999999988 4776543 33344443
No 92
>PRK05569 flavodoxin; Provisional
Probab=20.61 E-value=5.1e+02 Score=24.63 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=57.9
Q ss_pred HHHHcCce-EEEeccCccCcccccCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEeCCCCC-hhHHHHH
Q 003215 173 ILKQHGIT-HILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKGGRVFVHCCQGVS-RSTSLVI 250 (838)
Q Consensus 173 ~Lk~~GIT-hILN~a~e~~p~~~~~d~~Yl~LpI~D~~~eDI~~~f~eaidFIeeA~~~GGrVLVHC~AGVS-RSaTVVI 250 (838)
.+++.|+. .++++...........+.-.+.-|+....... ...+...++.+....-+|.+|.+.+..|-+ ..+.-.+
T Consensus 25 ~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~ 103 (141)
T PRK05569 25 GAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLW 103 (141)
T ss_pred HHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHH
Confidence 34456654 44554322112222345556666665443210 011233333333323468899999999865 3333234
Q ss_pred HHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Q 003215 251 AYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRV 292 (838)
Q Consensus 251 AYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L 292 (838)
.-++...|+.....+.. .-.|+..-++++.+|-+++
T Consensus 104 ~~~l~~~g~~~~~~~~~------~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 104 KDRMKDYGFNVIGDLAV------NESPNKEELNSAKELGKKL 139 (141)
T ss_pred HHHHHHCCCeEeeeEEE------ccCCCHHHHHHHHHHHHHH
Confidence 44445555544332111 1248888888888887776
No 93
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=20.53 E-value=3e+02 Score=29.68 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVR----EKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQY 267 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~----~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~ 267 (838)
..+.+...+..+..|+++.+ .+|.+|+|||+.. ..=|++|+-.+++.++....
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGn------sLR~i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGN------SLRAIVKHLEGISDEAIKEL 186 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcH------HHHHHHHHHhcCCHhhhhhe
Confidence 45667777888888877544 5689999999873 34456777778777665543
No 94
>PRK13463 phosphatase PhoE; Provisional
Probab=20.33 E-value=1.9e+02 Score=29.67 Aligned_cols=51 Identities=14% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHH
Q 003215 209 PSEDITSILYDVFDYFEDVREK--GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 265 (838)
Q Consensus 209 ~~eDI~~~f~eaidFIeeA~~~--GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~ 265 (838)
..+.+......+..++++..++ ++.|||-+++|+-| ++++|++ ++.++...
T Consensus 119 ~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir---~~~~~~~---~~~~~~~~ 171 (203)
T PRK13463 119 SGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAK---LLVGHFA---GIEIENVW 171 (203)
T ss_pred CCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHH---HHHHHHh---CCCHHHHh
Confidence 3466777777788888776543 57899999999887 3455554 66666543
No 95
>PRK02866 cyanate hydratase; Validated
Probab=20.19 E-value=60 Score=32.97 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCEEEEEeCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH--ccCC
Q 003215 219 DVFDYFEDVREKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRV--HAFP 296 (838)
Q Consensus 219 eaidFIeeA~~~GGrVLVHC~AGVSRSaTVVIAYLMk~~gmSledA~~~VRs~RP~I~PN~GFl~QLle~Ek~L--~~~p 296 (838)
+..+.|.+++.+.|-..=.-...+++|...++|.+.-...++.++|-...+.. ........+|+.+-.+- ...+
T Consensus 5 ~~~e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L----gL~~~~~~~l~~~P~rg~~~~~~ 80 (147)
T PRK02866 5 ELTEKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL----GLDEDAVALLQEVPYRGSLPPAV 80 (147)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh----CCCHHHHHHHhcCCcCCCCCCCC
Confidence 34556666666555444344456778888888888888899999998887644 34444556666554332 1111
Q ss_pred CCccccchhcccC
Q 003215 297 LSPSSLLRMYRIA 309 (838)
Q Consensus 297 ~spsS~~RLYRLa 309 (838)
.+-..+||+|.+-
T Consensus 81 ptdP~iYR~yE~v 93 (147)
T PRK02866 81 PTDPLIYRFYEMV 93 (147)
T ss_pred CCCcHHHHHHHHH
Confidence 1222588888853
No 96
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.15 E-value=53 Score=34.51 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=6.9
Q ss_pred CCCcchhhHHhHHHh
Q 003215 796 EGSDQNQFGYDILTR 810 (838)
Q Consensus 796 ~~vdw~qvg~~~l~q 810 (838)
+.|||++.|+..|+|
T Consensus 162 DgVHwn~~a~r~ls~ 176 (183)
T cd01842 162 DGVHWNYVAHRRLSN 176 (183)
T ss_pred CCcCcCHHHHHHHHH
Confidence 344444444444444
Done!