BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003217
(838 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 36/284 (12%)
Query: 545 LYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAA 604
+YT ++N + AGT+NV G++ ++ L WL + + VG QE+++ +
Sbjct: 1 MYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------S 50
Query: 605 KETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
KE + W + + L + + +V +L G+++ ++V++ Y+ +V+
Sbjct: 51 KEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE 110
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
V G +GNKG V +R + ++ +C VN H AAH+E RRN D+ + M FC+P
Sbjct: 111 TVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQP 170
Query: 725 SNLCXXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEAR 784
S PL+ +S D++++LGD NYR++ + ++ +
Sbjct: 171 DP-----------------SLPPLT---------ISNHDVILWLGDLNYRIEELDVEKVK 204
Query: 785 DFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
I ++ F L DQL+ ++ A VF+G E ++ F PTYK++
Sbjct: 205 KLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD 248
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 36/280 (12%)
Query: 549 MENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETV 608
++N + AGT+NV G++ ++ L WL + + VG QE+++ +KE
Sbjct: 2 IQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------SKEAF 51
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
+ W + + L + + +V +L G+++ ++V++ Y+ +V+ V
Sbjct: 52 FFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGT 111
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKG V +R + ++ +C VN H AAH+E RRN D+ + M FC+P
Sbjct: 112 GIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDP-- 169
Query: 729 XXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
S PL+ +S D++++LGD NYR++ + ++ + I
Sbjct: 170 ---------------SLPPLT---------ISNHDVILWLGDLNYRIEELDVEKVKKLIE 205
Query: 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
++ F L DQL+ ++ A VF+G E ++ F PTYK++
Sbjct: 206 EKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD 245
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 132/304 (43%), Gaps = 47/304 (15%)
Query: 530 PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVG-IVVVG 588
P+ + EL +E ++ +N+KI ++N+ G ++ L +WL + + I VVG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLN-GCSATTKLENWLFPENTPLADIYVVG 61
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGL 644
QE+ +SA A W + ++L+ G + ++ S QL G
Sbjct: 62 FQEIVQLTPQQVISA--------DPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+ ++ +++ + +V+ G G GNKGAV +R D +CF+ H AA
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCXXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADM 764
+ R DH YRT+ SGL + D
Sbjct: 174 YDER----DHDYRTIA----------------------------SGLRFRRGRSIFNHDY 201
Query: 765 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 824
V++ GDFNYR+ +TY+E I+Q +L E DQL +M G VF E I FPPT
Sbjct: 202 VVWFGDFNYRI-SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPT 260
Query: 825 YKFE 828
YKF+
Sbjct: 261 YKFD 264
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 54/287 (18%)
Query: 552 LKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLE 611
+ + GTWN+G ++ + SW S + L EV + + G +
Sbjct: 8 ISVFIGTWNMGSVPPPKN-VTSWFTSKG-----LGKTLDEVT-----VTIPHDIYVFGTQ 56
Query: 612 GSAVG-HWWLDMIGKILDDGST--FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
++VG WLD++ L + + + + + L + +AV V+ ++ + V ++V
Sbjct: 57 ENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKT 116
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKGAVG+ FVNCH + E RRN ++ + R ++
Sbjct: 117 GIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL------- 169
Query: 729 XXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADM------VIFLGDFNYRLDGITYDE 782
G +L+ D+ + + GD NYRLD + E
Sbjct: 170 --------------------------GDRQLNAFDISLRFTHLFWFGDLNYRLD-MDIQE 202
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
++IS++ F+ L DQL E E VF E +I FPPTY++E+
Sbjct: 203 ILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYER 249
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 46/282 (16%)
Query: 551 NLKILAGTWNVGQGRASQDALISWLGSAASDVG--IVVVGLQEVEMGAGFLAMSAAKETV 608
N+ + TWN+ + +L +L A +D + V+G+QE
Sbjct: 25 NVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE----------------- 67
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
G + W + + L G + + S L +++++R++L + +V+ + V
Sbjct: 68 ---GCSDRREWETRLQETL--GPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTT 122
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
I KGA+G+ + F+ HF + V R D+ + + P N+
Sbjct: 123 RIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVL--PRNVP 180
Query: 729 XXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
TNP + E V + GDFN+RL G
Sbjct: 181 ---------------DTNPYRSSAADVTTRFDE---VFWFGDFNFRLSGGRTVVDALLCQ 222
Query: 789 QRCFD--WLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
D L + DQL EM G++F+G +E DI F P+YKF+
Sbjct: 223 GLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD 264
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKF 821
+D + ++GD N R++ A+ + Q D L DQL+ E +F G E + F
Sbjct: 163 SDFLFWIGDLNVRVE-TNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTF 220
Query: 822 PPTYKFE 828
PTYKF+
Sbjct: 221 KPTYKFK 227
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI- 362
Query: 460 FAVQCLCTFG 469
FA L G
Sbjct: 363 FAHPTLSVKG 372
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI- 362
Query: 460 FAVQCLCTFG 469
FA L G
Sbjct: 363 FAHPTLSVKG 372
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQ 363
Query: 460 FA 461
A
Sbjct: 364 AA 365
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|3L92|A Chain A, Phosphopantetheine Adenylyltransferase From Yersinia
Pestis Complexed With Coenzyme A.
pdb|3L93|A Chain A, Phosphopantetheine Adenylyltransferase From Yersinia
Pestis
Length = 162
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 59 RLDYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKP-PVRAAL 111
+L M L KL S +EK F SSS + E GGDI F P PV AL
Sbjct: 104 QLANMNRHLMPKLESVFLIPSEKWSFISSSLVKEVARHGGDITPFLPKPVTKAL 157
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 61 DYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAA 110
D FL RK SAT TNEK+ A+ + L E I K G P + + ++
Sbjct: 342 DLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKYYTAINSS 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,602,266
Number of Sequences: 62578
Number of extensions: 1019951
Number of successful extensions: 2161
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2126
Number of HSP's gapped (non-prelim): 42
length of query: 838
length of database: 14,973,337
effective HSP length: 107
effective length of query: 731
effective length of database: 8,277,491
effective search space: 6050845921
effective search space used: 6050845921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)