Query 003217
Match_columns 838
No_of_seqs 448 out of 2554
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 19:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566 Inositol-1,4,5-triphos 100.0 9.9E-64 2.1E-68 567.0 21.2 273 516-835 506-786 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 3.3E-58 7.2E-63 513.3 24.1 193 617-836 348-542 (621)
3 smart00128 IPPc Inositol polyp 100.0 2E-55 4.3E-60 477.8 23.7 245 551-835 2-255 (310)
4 COG5411 Phosphatidylinositol 5 100.0 2.5E-47 5.4E-52 407.2 15.9 266 528-835 6-280 (460)
5 KOG0271 Notchless-like WD40 re 100.0 4.3E-40 9.2E-45 342.5 26.3 326 141-524 126-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 2E-35 4.3E-40 307.7 28.1 318 191-566 115-466 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 1E-33 2.2E-38 299.0 21.6 266 191-524 175-458 (459)
8 KOG0281 Beta-TrCP (transducin 100.0 1.1E-32 2.3E-37 283.8 16.2 269 135-530 200-481 (499)
9 KOG0281 Beta-TrCP (transducin 100.0 2E-31 4.4E-36 274.5 11.3 231 191-527 197-429 (499)
10 KOG0286 G-protein beta subunit 100.0 9.6E-29 2.1E-33 250.8 30.2 269 138-524 63-343 (343)
11 KOG0295 WD40 repeat-containing 100.0 2.2E-29 4.7E-34 262.0 23.7 267 191-525 108-405 (406)
12 KOG0319 WD40-repeat-containing 100.0 1.8E-28 3.9E-33 274.0 27.6 363 135-524 108-617 (775)
13 KOG0263 Transcription initiati 100.0 8E-29 1.7E-33 279.9 25.1 244 191-530 378-653 (707)
14 KOG0279 G protein beta subunit 100.0 7.5E-28 1.6E-32 243.2 29.4 261 148-527 35-314 (315)
15 KOG0315 G-protein beta subunit 100.0 4.1E-28 8.8E-33 241.3 25.0 258 148-529 17-291 (311)
16 KOG0319 WD40-repeat-containing 100.0 6.2E-28 1.4E-32 269.8 28.4 373 137-565 69-580 (775)
17 KOG0272 U4/U6 small nuclear ri 100.0 9.4E-29 2E-33 261.5 20.6 256 142-485 187-458 (459)
18 KOG0263 Transcription initiati 100.0 5.6E-27 1.2E-31 265.1 25.8 240 144-487 391-649 (707)
19 KOG0279 G protein beta subunit 100.0 1.7E-26 3.8E-31 233.4 26.3 245 191-534 15-270 (315)
20 KOG0318 WD40 repeat stress pro 100.0 4.6E-25 1E-29 238.7 36.2 328 191-526 190-602 (603)
21 KOG0266 WD40 repeat-containing 100.0 5.4E-26 1.2E-30 261.6 31.1 266 141-525 170-453 (456)
22 KOG0273 Beta-transducin family 100.0 1.8E-26 4E-31 246.8 25.1 296 142-566 190-508 (524)
23 KOG0285 Pleiotropic regulator 99.9 3.3E-26 7.1E-31 237.3 24.9 265 191-524 151-437 (460)
24 KOG0274 Cdc4 and related F-box 99.9 3.1E-26 6.7E-31 264.2 27.3 268 142-535 218-491 (537)
25 KOG0315 G-protein beta subunit 99.9 1.4E-25 3E-30 223.3 26.4 265 126-506 24-308 (311)
26 KOG0313 Microtubule binding pr 99.9 3.5E-26 7.6E-31 239.2 22.4 286 188-566 103-404 (423)
27 KOG0265 U5 snRNP-specific prot 99.9 1.5E-25 3.3E-30 228.5 23.9 264 191-522 47-334 (338)
28 KOG0313 Microtubule binding pr 99.9 1.7E-25 3.8E-30 234.0 24.3 288 133-524 106-416 (423)
29 KOG0266 WD40 repeat-containing 99.9 4.6E-25 1E-29 253.9 29.5 238 191-530 159-413 (456)
30 KOG0291 WD40-repeat-containing 99.9 2.9E-24 6.2E-29 240.5 31.3 270 134-527 309-613 (893)
31 KOG0274 Cdc4 and related F-box 99.9 3.3E-25 7.2E-30 255.7 24.6 235 191-534 208-449 (537)
32 PLN00181 protein SPA1-RELATED; 99.9 1.5E-23 3.3E-28 257.9 37.4 275 133-525 484-792 (793)
33 KOG0284 Polyadenylation factor 99.9 2.3E-25 4.9E-30 234.9 17.5 265 139-528 105-382 (464)
34 KOG0306 WD40-repeat-containing 99.9 3E-23 6.6E-28 232.2 35.2 369 134-532 67-628 (888)
35 KOG0295 WD40 repeat-containing 99.9 6.4E-24 1.4E-28 221.4 25.6 266 148-485 127-404 (406)
36 KOG0291 WD40-repeat-containing 99.9 1.4E-22 2.9E-27 227.2 37.8 359 137-527 101-509 (893)
37 cd00200 WD40 WD40 domain, foun 99.9 6.9E-23 1.5E-27 215.1 33.4 266 191-524 9-289 (289)
38 KOG0645 WD40 repeat protein [G 99.9 5E-23 1.1E-27 207.6 28.9 266 145-526 30-311 (312)
39 KOG0292 Vesicle coat complex C 99.9 7.7E-24 1.7E-28 239.7 24.8 298 191-530 9-325 (1202)
40 KOG0293 WD40 repeat-containing 99.9 5.6E-24 1.2E-28 224.2 22.0 272 191-527 224-514 (519)
41 KOG0306 WD40-repeat-containing 99.9 2E-23 4.3E-28 233.7 27.6 279 134-526 375-664 (888)
42 KOG0296 Angio-associated migra 99.9 4.2E-23 9.2E-28 215.4 27.8 299 191-526 64-398 (399)
43 KOG0286 G-protein beta subunit 99.9 4.2E-23 9.1E-28 210.0 26.7 239 191-527 55-304 (343)
44 KOG0276 Vesicle coat complex C 99.9 1.7E-23 3.7E-28 229.9 24.6 277 112-530 12-302 (794)
45 KOG0308 Conserved WD40 repeat- 99.9 4.4E-24 9.6E-29 235.9 17.4 246 196-528 29-287 (735)
46 KOG0284 Polyadenylation factor 99.9 5.7E-24 1.2E-28 224.3 15.4 237 191-531 96-342 (464)
47 PLN00181 protein SPA1-RELATED; 99.9 6E-22 1.3E-26 243.8 35.8 242 191-530 483-742 (793)
48 KOG0285 Pleiotropic regulator 99.9 2.2E-22 4.8E-27 209.0 25.5 266 133-486 152-438 (460)
49 KOG0282 mRNA splicing factor [ 99.9 6.7E-24 1.4E-28 228.3 14.0 266 191-524 214-503 (503)
50 KOG0318 WD40 repeat stress pro 99.9 3.1E-21 6.7E-26 209.2 34.6 273 229-530 178-564 (603)
51 KOG0301 Phospholipase A2-activ 99.9 2.2E-22 4.8E-27 224.2 25.5 264 136-527 18-289 (745)
52 KOG0565 Inositol polyphosphate 99.9 7.5E-24 1.6E-28 205.8 12.3 143 632-799 2-145 (145)
53 KOG0276 Vesicle coat complex C 99.9 2.2E-22 4.8E-27 221.3 24.3 238 191-532 13-263 (794)
54 KOG0275 Conserved WD40 repeat- 99.9 1.1E-22 2.4E-27 208.2 16.0 271 140-524 223-507 (508)
55 KOG0273 Beta-transducin family 99.9 6.2E-21 1.3E-25 204.7 28.1 277 134-526 237-523 (524)
56 KOG0645 WD40 repeat protein [G 99.9 1.9E-20 4E-25 189.1 29.5 233 191-526 14-261 (312)
57 KOG0275 Conserved WD40 repeat- 99.9 2.9E-22 6.3E-27 205.2 15.7 244 191-529 213-470 (508)
58 KOG0316 Conserved WD40 repeat- 99.9 4.4E-21 9.5E-26 189.9 23.0 266 191-527 17-300 (307)
59 PTZ00312 inositol-1,4,5-tripho 99.9 1.5E-22 3.3E-27 206.2 10.3 119 673-827 64-219 (356)
60 KOG0265 U5 snRNP-specific prot 99.9 2.3E-20 5.1E-25 190.8 25.7 273 135-485 50-336 (338)
61 cd00200 WD40 WD40 domain, foun 99.9 2.3E-19 4.9E-24 188.3 33.6 264 134-485 11-289 (289)
62 KOG0288 WD40 repeat protein Ti 99.9 2.4E-21 5.2E-26 205.0 16.1 255 143-524 188-459 (459)
63 KOG0283 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 216.0 22.8 242 191-530 267-580 (712)
64 KOG0292 Vesicle coat complex C 99.9 4.9E-20 1.1E-24 209.2 27.4 275 150-487 30-321 (1202)
65 KOG0301 Phospholipase A2-activ 99.9 8.1E-21 1.7E-25 211.8 19.9 229 191-526 14-249 (745)
66 PTZ00421 coronin; Provisional 99.9 8.6E-20 1.9E-24 210.4 29.2 248 193-529 22-293 (493)
67 PTZ00420 coronin; Provisional 99.9 1.7E-19 3.7E-24 209.2 30.8 228 191-511 74-319 (568)
68 PTZ00420 coronin; Provisional 99.9 2.3E-19 5E-24 208.0 30.9 223 208-527 49-294 (568)
69 KOG0308 Conserved WD40 repeat- 99.9 1.2E-20 2.7E-25 208.9 19.1 275 144-526 39-327 (735)
70 KOG0300 WD40 repeat-containing 99.9 5E-20 1.1E-24 188.6 20.8 289 191-529 148-479 (481)
71 KOG0296 Angio-associated migra 99.8 9.1E-19 2E-23 183.2 30.4 296 135-487 67-398 (399)
72 PTZ00421 coronin; Provisional 99.8 9.1E-19 2E-23 201.9 32.4 224 191-510 75-315 (493)
73 KOG0294 WD40 repeat-containing 99.8 2.7E-19 5.9E-24 184.0 24.4 232 184-487 37-281 (362)
74 KOG0278 Serine/threonine kinas 99.8 6.5E-20 1.4E-24 182.9 19.0 267 182-527 6-298 (334)
75 KOG0316 Conserved WD40 repeat- 99.8 2.9E-19 6.3E-24 177.1 21.8 233 232-527 8-258 (307)
76 KOG0277 Peroxisomal targeting 99.8 2.7E-19 5.9E-24 179.2 21.4 230 191-524 60-307 (311)
77 KOG0268 Sof1-like rRNA process 99.8 5.6E-20 1.2E-24 191.8 15.9 272 182-526 56-345 (433)
78 KOG0640 mRNA cleavage stimulat 99.8 4.5E-19 9.8E-24 181.5 21.5 278 191-525 112-425 (430)
79 KOG0641 WD40 repeat protein [G 99.8 2.2E-17 4.7E-22 162.5 31.7 294 126-525 29-348 (350)
80 KOG1446 Histone H3 (Lys4) meth 99.8 8.5E-18 1.8E-22 173.8 29.9 266 191-526 14-303 (311)
81 KOG0305 Anaphase promoting com 99.8 1.6E-18 3.4E-23 194.0 26.5 262 142-528 188-463 (484)
82 KOG0278 Serine/threonine kinas 99.8 1.9E-19 4.1E-24 179.7 15.0 239 126-490 43-301 (334)
83 KOG0643 Translation initiation 99.8 4.9E-18 1.1E-22 171.3 25.0 270 191-526 10-317 (327)
84 KOG0310 Conserved WD40 repeat- 99.8 3E-18 6.5E-23 185.3 24.5 225 192-523 69-306 (487)
85 KOG0277 Peroxisomal targeting 99.8 1.3E-18 2.8E-23 174.4 19.0 245 119-486 43-308 (311)
86 KOG0299 U3 snoRNP-associated p 99.8 2E-18 4.3E-23 185.4 21.7 239 191-527 142-411 (479)
87 KOG0299 U3 snoRNP-associated p 99.8 8.2E-18 1.8E-22 180.7 26.0 275 137-524 149-454 (479)
88 KOG0973 Histone transcription 99.8 5.1E-18 1.1E-22 198.7 24.4 304 191-595 13-360 (942)
89 KOG1407 WD40 repeat protein [F 99.8 3.5E-17 7.5E-22 164.8 25.3 251 191-510 20-284 (313)
90 KOG0293 WD40 repeat-containing 99.8 7E-18 1.5E-22 178.5 21.1 264 142-487 236-513 (519)
91 KOG0282 mRNA splicing factor [ 99.8 2.6E-18 5.7E-23 185.4 18.2 259 148-485 234-503 (503)
92 KOG0646 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 182.5 19.9 208 191-535 81-316 (476)
93 KOG0641 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 157.3 26.1 245 191-526 32-303 (350)
94 KOG0310 Conserved WD40 repeat- 99.8 2.5E-17 5.4E-22 178.3 22.9 223 140-487 78-309 (487)
95 KOG0289 mRNA splicing factor [ 99.8 9.2E-17 2E-21 171.3 26.3 268 191-524 219-504 (506)
96 KOG0647 mRNA export protein (c 99.8 1.2E-16 2.6E-21 163.8 25.0 256 134-478 29-315 (347)
97 KOG0321 WD40 repeat-containing 99.8 2.1E-17 4.6E-22 183.1 20.3 302 144-527 66-392 (720)
98 KOG1408 WD40 repeat protein [F 99.8 7.1E-16 1.5E-20 172.1 31.8 383 138-527 266-714 (1080)
99 KOG0288 WD40 repeat protein Ti 99.8 4.8E-18 1E-22 180.2 13.3 257 191-563 175-443 (459)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 9.8E-16 2.1E-20 165.0 30.6 254 148-530 8-283 (300)
101 KOG0973 Histone transcription 99.7 4.4E-16 9.5E-21 182.6 28.7 295 134-527 15-356 (942)
102 KOG1539 WD repeat protein [Gen 99.7 1.8E-15 3.9E-20 172.3 31.7 349 133-537 160-617 (910)
103 KOG2048 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 168.2 31.5 279 134-527 27-320 (691)
104 KOG2445 Nuclear pore complex c 99.7 8.3E-16 1.8E-20 158.0 25.5 256 191-525 13-317 (361)
105 KOG0300 WD40 repeat-containing 99.7 3.8E-17 8.1E-22 167.7 15.4 261 204-534 125-395 (481)
106 KOG0305 Anaphase promoting com 99.7 2.3E-16 4.9E-21 176.9 22.4 221 142-487 229-461 (484)
107 KOG0640 mRNA cleavage stimulat 99.7 5.9E-17 1.3E-21 166.1 15.5 252 232-562 103-383 (430)
108 KOG0639 Transducin-like enhanc 99.7 2E-16 4.3E-21 170.7 19.8 268 137-525 426-703 (705)
109 KOG1446 Histone H3 (Lys4) meth 99.7 5.6E-15 1.2E-19 153.1 28.8 268 132-487 14-303 (311)
110 KOG2096 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 156.9 23.1 287 191-524 86-400 (420)
111 KOG1036 Mitotic spindle checkp 99.7 4E-15 8.6E-20 153.5 26.3 242 144-477 28-294 (323)
112 KOG0639 Transducin-like enhanc 99.7 1.7E-16 3.7E-21 171.2 16.5 236 191-525 419-662 (705)
113 KOG0267 Microtubule severing p 99.7 2.4E-17 5.1E-22 184.9 10.2 220 191-514 28-256 (825)
114 KOG0647 mRNA export protein (c 99.7 4.8E-15 1E-19 152.2 25.6 257 191-517 27-315 (347)
115 KOG0772 Uncharacterized conser 99.7 3.7E-16 8E-21 169.5 18.4 253 233-565 159-435 (641)
116 KOG0646 WD40 repeat protein [G 99.7 7.3E-16 1.6E-20 166.1 19.0 234 135-467 84-327 (476)
117 KOG0772 Uncharacterized conser 99.7 2.2E-15 4.8E-20 163.5 21.8 288 190-524 166-485 (641)
118 KOG2096 WD40 repeat protein [G 99.7 9.2E-16 2E-20 158.0 17.6 103 425-527 193-309 (420)
119 KOG0264 Nucleosome remodeling 99.7 1.6E-15 3.5E-20 163.4 20.1 249 191-526 124-404 (422)
120 KOG0294 WD40 repeat-containing 99.7 8.3E-15 1.8E-19 151.3 23.9 258 206-527 4-282 (362)
121 KOG0283 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 173.5 21.0 213 235-527 260-533 (712)
122 KOG2048 WD40 repeat protein [G 99.7 3.6E-14 7.7E-19 159.0 28.4 235 191-526 25-275 (691)
123 KOG0269 WD40 repeat-containing 99.7 8E-16 1.7E-20 174.0 14.8 225 202-527 99-341 (839)
124 KOG1332 Vesicle coat complex C 99.7 4.4E-15 9.5E-20 148.5 18.2 243 193-524 13-284 (299)
125 KOG0643 Translation initiation 99.7 1.6E-14 3.5E-19 146.1 21.8 174 141-363 21-242 (327)
126 KOG1407 WD40 repeat protein [F 99.6 1.5E-14 3.3E-19 145.9 20.8 242 235-535 14-270 (313)
127 KOG1408 WD40 repeat protein [F 99.6 9.4E-15 2E-19 163.2 21.2 225 191-487 459-713 (1080)
128 KOG1036 Mitotic spindle checkp 99.6 8.2E-14 1.8E-18 143.8 26.3 251 192-515 14-293 (323)
129 KOG0270 WD40 repeat-containing 99.6 1.1E-14 2.3E-19 156.4 19.9 228 202-530 191-453 (463)
130 KOG0267 Microtubule severing p 99.6 2.9E-16 6.2E-21 176.3 7.4 216 204-529 5-229 (825)
131 KOG0650 WD40 repeat nucleolar 99.6 2.7E-14 5.8E-19 157.6 22.4 287 191-523 400-732 (733)
132 KOG0642 Cell-cycle nuclear pro 99.6 6.3E-15 1.4E-19 162.2 16.4 265 133-498 295-573 (577)
133 KOG0302 Ribosome Assembly prot 99.6 1.7E-14 3.8E-19 151.8 17.6 112 415-527 253-379 (440)
134 KOG1063 RNA polymerase II elon 99.6 1.7E-13 3.8E-18 153.7 25.3 111 417-527 523-649 (764)
135 KOG0649 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 138.1 21.2 245 192-525 11-273 (325)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 9.2E-13 2E-17 141.8 30.2 244 141-506 41-298 (300)
137 KOG4283 Transcription-coupled 99.6 4.8E-14 1E-18 144.1 18.1 210 239-528 41-278 (397)
138 KOG1332 Vesicle coat complex C 99.6 6.7E-14 1.5E-18 140.1 18.3 242 142-490 23-291 (299)
139 KOG0264 Nucleosome remodeling 99.6 2E-13 4.3E-18 147.4 22.5 236 148-489 144-406 (422)
140 KOG4283 Transcription-coupled 99.6 2.4E-13 5.1E-18 139.2 21.5 295 191-526 43-365 (397)
141 KOG1539 WD repeat protein [Gen 99.6 7.9E-13 1.7E-17 151.1 27.3 330 142-524 256-646 (910)
142 KOG1273 WD40 repeat protein [G 99.6 4.4E-13 9.6E-18 138.4 22.3 272 192-527 24-323 (405)
143 KOG0268 Sof1-like rRNA process 99.6 4.9E-14 1.1E-18 147.8 15.4 257 235-564 60-328 (433)
144 KOG1274 WD40 repeat protein [G 99.6 7.8E-13 1.7E-17 152.8 26.0 233 191-527 13-263 (933)
145 KOG2106 Uncharacterized conser 99.5 1.3E-11 2.7E-16 134.4 33.3 330 107-524 170-519 (626)
146 KOG0270 WD40 repeat-containing 99.5 2.5E-13 5.4E-18 146.0 19.4 256 112-487 172-449 (463)
147 KOG1274 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 149.5 25.6 251 87-467 21-278 (933)
148 KOG0321 WD40 repeat-containing 99.5 2.6E-13 5.6E-18 151.1 17.5 259 203-530 64-351 (720)
149 KOG0642 Cell-cycle nuclear pro 99.5 2.8E-13 6E-18 149.4 13.9 263 191-530 294-565 (577)
150 KOG2445 Nuclear pore complex c 99.5 7.7E-12 1.7E-16 129.2 23.0 115 141-271 24-145 (361)
151 KOG1538 Uncharacterized conser 99.5 2.2E-12 4.7E-17 143.6 19.3 261 193-526 14-293 (1081)
152 KOG0649 WD40 repeat protein [G 99.5 1.5E-11 3.3E-16 123.1 23.4 180 133-350 63-245 (325)
153 KOG0289 mRNA splicing factor [ 99.5 1.4E-11 3.1E-16 132.0 24.4 230 191-486 261-505 (506)
154 KOG0307 Vesicle coat complex C 99.5 3.1E-13 6.7E-18 159.6 12.8 243 193-529 66-330 (1049)
155 KOG1063 RNA polymerase II elon 99.4 3.5E-11 7.6E-16 135.5 26.8 315 145-524 28-389 (764)
156 KOG1007 WD repeat protein TSSC 99.4 2.5E-11 5.4E-16 124.3 22.8 245 191-525 63-360 (370)
157 KOG0650 WD40 repeat nucleolar 99.4 4.4E-12 9.4E-17 140.4 18.6 262 232-528 391-682 (733)
158 KOG0269 WD40 repeat-containing 99.4 1.7E-12 3.8E-17 147.4 15.5 216 148-482 107-335 (839)
159 KOG1445 Tumor-specific antigen 99.4 2.2E-11 4.7E-16 135.1 23.0 107 421-527 629-751 (1012)
160 COG2319 FOG: WD40 repeat [Gene 99.4 1.4E-10 3E-15 127.7 29.7 236 191-529 65-317 (466)
161 KOG2106 Uncharacterized conser 99.4 3.7E-10 7.9E-15 123.2 31.4 266 192-527 201-478 (626)
162 KOG4328 WD40 protein [Function 99.4 2.1E-11 4.6E-16 131.6 21.4 272 191-524 186-493 (498)
163 KOG2919 Guanine nucleotide-bin 99.4 2.4E-11 5.1E-16 126.2 20.7 253 194-530 52-331 (406)
164 KOG0644 Uncharacterized conser 99.4 1.1E-12 2.4E-17 149.4 11.6 267 191-524 190-466 (1113)
165 COG2319 FOG: WD40 repeat [Gene 99.4 9.4E-10 2E-14 121.0 34.5 272 134-529 67-362 (466)
166 KOG4378 Nuclear protein COP1 [ 99.4 1.7E-11 3.8E-16 132.9 19.5 214 193-509 81-304 (673)
167 KOG2055 WD40 repeat protein [G 99.4 2.4E-11 5.3E-16 131.3 20.1 240 191-530 213-471 (514)
168 KOG0302 Ribosome Assembly prot 99.4 1.4E-11 3E-16 130.2 17.1 239 191-524 151-436 (440)
169 KOG2919 Guanine nucleotide-bin 99.4 7.9E-11 1.7E-15 122.4 21.3 221 200-517 120-361 (406)
170 PRK11028 6-phosphogluconolacto 99.3 7E-10 1.5E-14 122.8 29.3 267 148-527 9-305 (330)
171 KOG2055 WD40 repeat protein [G 99.3 2.5E-10 5.4E-15 123.6 23.8 271 134-526 215-512 (514)
172 KOG1034 Transcriptional repres 99.3 1.5E-11 3.2E-16 128.1 13.7 250 203-526 105-383 (385)
173 KOG0303 Actin-binding protein 99.3 1E-10 2.3E-15 124.3 19.5 127 191-348 81-211 (472)
174 KOG0322 G-protein beta subunit 99.3 6.6E-11 1.4E-15 120.0 16.5 267 191-525 14-322 (323)
175 KOG0303 Actin-binding protein 99.3 2.7E-11 5.8E-16 128.6 11.9 172 415-599 77-267 (472)
176 KOG1188 WD40 repeat protein [G 99.2 1.9E-10 4.2E-15 120.5 17.1 258 204-525 41-345 (376)
177 KOG1517 Guanine nucleotide bin 99.2 6.9E-10 1.5E-14 129.9 23.2 278 193-527 1066-1382(1387)
178 KOG1963 WD40 repeat protein [G 99.2 4.6E-09 9.9E-14 122.0 29.5 352 144-527 174-584 (792)
179 KOG4328 WD40 protein [Function 99.2 6.1E-10 1.3E-14 120.5 20.2 158 142-340 199-399 (498)
180 KOG1034 Transcriptional repres 99.2 1.2E-10 2.6E-15 121.3 14.1 96 148-271 112-212 (385)
181 KOG1007 WD repeat protein TSSC 99.2 7.1E-10 1.5E-14 113.8 17.7 230 211-527 38-290 (370)
182 KOG1587 Cytoplasmic dynein int 99.2 3.9E-09 8.4E-14 122.2 25.7 257 191-526 242-516 (555)
183 KOG0307 Vesicle coat complex C 99.2 1.7E-10 3.7E-15 136.8 14.3 231 144-488 81-328 (1049)
184 KOG0771 Prolactin regulatory e 99.2 3.1E-10 6.8E-15 122.1 14.4 70 195-273 148-218 (398)
185 KOG1009 Chromatin assembly com 99.2 2E-10 4.4E-15 122.7 12.7 176 191-487 13-195 (434)
186 KOG0644 Uncharacterized conser 99.2 6.4E-11 1.4E-15 135.3 9.4 240 234-532 183-432 (1113)
187 KOG4378 Nuclear protein COP1 [ 99.2 6.6E-10 1.4E-14 120.9 16.2 204 148-474 98-309 (673)
188 KOG1009 Chromatin assembly com 99.1 1.2E-08 2.6E-13 109.3 24.8 128 134-273 15-156 (434)
189 KOG1334 WD40 repeat protein [G 99.1 8.9E-10 1.9E-14 120.1 16.0 275 191-525 142-465 (559)
190 PRK01742 tolB translocation pr 99.1 2.5E-09 5.4E-14 122.9 19.8 208 191-508 203-425 (429)
191 KOG1538 Uncharacterized conser 99.1 4.4E-09 9.6E-14 117.7 20.6 266 134-487 14-293 (1081)
192 KOG4227 WD40 repeat protein [G 99.1 7.8E-09 1.7E-13 109.6 19.3 114 134-271 58-180 (609)
193 KOG1240 Protein kinase contain 99.1 1E-08 2.3E-13 122.1 21.8 250 191-528 1048-1336(1431)
194 KOG1273 WD40 repeat protein [G 99.1 6.5E-08 1.4E-12 100.7 24.6 260 142-487 35-322 (405)
195 PRK01742 tolB translocation pr 99.0 7.8E-09 1.7E-13 118.8 19.3 207 211-526 182-401 (429)
196 KOG0974 WD-repeat protein WDR6 99.0 5.5E-08 1.2E-12 114.9 25.8 110 418-527 174-289 (967)
197 KOG1240 Protein kinase contain 99.0 4E-08 8.7E-13 117.2 24.5 164 144-348 1062-1233(1431)
198 KOG0290 Conserved WD40 repeat- 99.0 1.7E-08 3.6E-13 104.1 18.1 111 417-527 194-319 (364)
199 KOG0771 Prolactin regulatory e 99.0 3.8E-09 8.2E-14 113.9 13.7 198 245-526 148-354 (398)
200 PRK11028 6-phosphogluconolacto 99.0 1.7E-07 3.7E-12 103.7 27.4 244 139-487 43-304 (330)
201 PRK03629 tolB translocation pr 99.0 1.2E-07 2.6E-12 108.9 24.8 211 191-508 198-427 (429)
202 KOG1445 Tumor-specific antigen 98.9 1.9E-08 4.1E-13 112.3 15.9 123 191-343 627-753 (1012)
203 KOG1524 WD40 repeat-containing 98.9 8.8E-08 1.9E-12 105.5 19.5 172 203-482 75-250 (737)
204 KOG1188 WD40 repeat protein [G 98.9 5.3E-08 1.1E-12 102.5 16.3 133 432-565 86-245 (376)
205 KOG1976 Inositol polyphosphate 98.9 2.7E-09 5.8E-14 110.0 5.9 129 673-838 153-334 (391)
206 KOG1310 WD40 repeat protein [G 98.8 8.6E-09 1.9E-13 113.6 8.1 130 398-527 29-179 (758)
207 PRK04922 tolB translocation pr 98.8 5.3E-07 1.1E-11 103.8 23.4 74 191-273 203-283 (433)
208 KOG0322 G-protein beta subunit 98.8 8.2E-08 1.8E-12 97.9 14.3 257 233-535 6-290 (323)
209 KOG1310 WD40 repeat protein [G 98.8 6E-08 1.3E-12 107.1 13.7 124 191-341 50-179 (758)
210 KOG0974 WD-repeat protein WDR6 98.8 1.8E-07 3.9E-12 110.7 17.4 148 198-490 140-291 (967)
211 KOG1517 Guanine nucleotide bin 98.8 1.9E-07 4.1E-12 110.0 17.3 160 141-349 1176-1341(1387)
212 KOG1963 WD40 repeat protein [G 98.7 1.4E-06 3.1E-11 101.6 24.1 108 418-525 204-321 (792)
213 KOG0290 Conserved WD40 repeat- 98.7 2.3E-07 5E-12 95.8 14.0 114 144-273 114-230 (364)
214 KOG2110 Uncharacterized conser 98.6 1.7E-06 3.7E-11 92.2 19.1 153 137-341 92-249 (391)
215 PRK05137 tolB translocation pr 98.6 5.8E-06 1.3E-10 95.3 25.0 73 191-272 201-280 (435)
216 KOG2394 WD40 protein DMR-N9 [G 98.6 4.3E-07 9.4E-12 100.5 14.5 93 191-291 290-383 (636)
217 PRK03629 tolB translocation pr 98.6 9.4E-06 2E-10 93.4 25.3 97 425-521 292-398 (429)
218 TIGR03300 assembly_YfgL outer 98.6 4E-05 8.6E-10 86.6 29.6 305 139-523 62-376 (377)
219 KOG4227 WD40 repeat protein [G 98.6 1.2E-06 2.6E-11 93.3 15.6 124 191-343 56-182 (609)
220 KOG1272 WD40-repeat-containing 98.6 1.3E-07 2.8E-12 102.9 8.5 100 433-532 224-329 (545)
221 KOG2110 Uncharacterized conser 98.6 1.3E-05 2.8E-10 85.8 23.0 89 439-527 152-249 (391)
222 KOG1523 Actin-related protein 98.6 9E-06 2E-10 85.4 21.0 238 191-522 10-274 (361)
223 KOG2394 WD40 protein DMR-N9 [G 98.5 1.2E-07 2.6E-12 104.7 7.1 87 421-507 292-383 (636)
224 PRK05137 tolB translocation pr 98.5 1.8E-05 3.9E-10 91.2 25.1 196 214-516 183-396 (435)
225 PRK02889 tolB translocation pr 98.5 8.2E-06 1.8E-10 93.8 22.2 71 191-270 195-270 (427)
226 TIGR02800 propeller_TolB tol-p 98.5 1E-05 2.2E-10 92.4 22.4 73 191-272 189-268 (417)
227 KOG1354 Serine/threonine prote 98.5 5.9E-06 1.3E-10 87.3 17.7 262 191-487 25-359 (433)
228 PF02239 Cytochrom_D1: Cytochr 98.5 5.8E-05 1.2E-09 84.9 26.8 296 206-563 9-339 (369)
229 KOG3881 Uncharacterized conser 98.5 1.7E-05 3.7E-10 85.3 20.9 103 431-533 217-327 (412)
230 KOG1272 WD40-repeat-containing 98.4 4.7E-07 1E-11 98.7 8.5 223 194-524 132-360 (545)
231 KOG4547 WD40 repeat-containing 98.4 6.1E-06 1.3E-10 92.9 16.8 95 431-527 115-221 (541)
232 PRK04922 tolB translocation pr 98.4 1.8E-05 3.8E-10 91.3 21.2 52 213-273 184-239 (433)
233 TIGR03300 assembly_YfgL outer 98.4 7.3E-05 1.6E-09 84.4 25.8 266 203-528 65-340 (377)
234 PF08662 eIF2A: Eukaryotic tra 98.4 6.7E-06 1.5E-10 84.0 15.1 114 191-347 59-185 (194)
235 KOG4190 Uncharacterized conser 98.4 9.8E-07 2.1E-11 97.4 8.8 246 191-524 735-986 (1034)
236 KOG2111 Uncharacterized conser 98.4 1.3E-05 2.8E-10 84.3 16.6 169 122-341 84-257 (346)
237 PF08662 eIF2A: Eukaryotic tra 98.3 3.7E-06 8E-11 85.9 11.7 103 420-526 60-179 (194)
238 TIGR02800 propeller_TolB tol-p 98.3 0.0001 2.2E-09 84.2 24.8 98 426-523 284-391 (417)
239 PRK02889 tolB translocation pr 98.3 9.5E-05 2.1E-09 85.1 24.4 95 425-519 289-393 (427)
240 PF02239 Cytochrom_D1: Cytochr 98.3 0.00039 8.4E-09 78.3 28.6 97 148-274 13-112 (369)
241 KOG1587 Cytoplasmic dynein int 98.3 4.5E-05 9.7E-10 88.9 21.3 94 433-527 363-473 (555)
242 PF00400 WD40: WD domain, G-be 98.3 2.2E-06 4.8E-11 63.1 6.1 37 232-268 2-39 (39)
243 KOG0309 Conserved WD40 repeat- 98.3 6.3E-06 1.4E-10 94.2 12.1 72 194-271 70-146 (1081)
244 PRK04792 tolB translocation pr 98.2 9.5E-05 2.1E-09 85.6 21.9 73 191-272 217-296 (448)
245 PRK00178 tolB translocation pr 98.2 0.00018 4E-09 82.7 23.6 73 191-272 198-277 (430)
246 KOG2321 WD40 repeat protein [G 98.2 0.0001 2.2E-09 82.8 19.3 278 239-534 49-351 (703)
247 KOG2111 Uncharacterized conser 98.2 1.4E-05 3E-10 84.0 11.9 104 142-271 147-257 (346)
248 KOG1064 RAVE (regulator of V-A 98.1 1.9E-05 4.1E-10 98.0 13.5 89 438-536 2313-2408(2439)
249 PF03372 Exo_endo_phos: Endonu 98.1 3.3E-06 7.1E-11 87.7 6.2 61 642-704 72-135 (249)
250 KOG3914 WD repeat protein WDR4 98.1 1E-05 2.2E-10 87.4 9.9 77 191-275 151-228 (390)
251 PRK11138 outer membrane biogen 98.1 0.0018 3.8E-08 73.7 27.8 96 429-524 293-392 (394)
252 KOG4497 Uncharacterized conser 98.0 0.00028 6.1E-09 74.5 18.2 99 421-519 320-425 (447)
253 KOG4190 Uncharacterized conser 98.0 5.8E-06 1.3E-10 91.4 6.1 89 436-524 847-946 (1034)
254 PLN02919 haloacid dehalogenase 98.0 0.0014 3E-08 83.3 28.1 258 195-528 571-890 (1057)
255 KOG1334 WD40 repeat protein [G 98.0 5E-05 1.1E-09 83.7 13.1 57 431-487 407-466 (559)
256 KOG4547 WD40 repeat-containing 98.0 0.00017 3.7E-09 81.5 17.2 120 203-360 70-192 (541)
257 KOG2139 WD40 repeat protein [G 98.0 0.00021 4.5E-09 76.4 16.6 113 142-269 153-267 (445)
258 KOG2315 Predicted translation 98.0 0.0019 4.1E-08 72.9 24.3 106 419-526 270-390 (566)
259 KOG1524 WD40 repeat-containing 98.0 0.00018 3.9E-09 80.1 15.6 126 395-521 116-250 (737)
260 PLN02919 haloacid dehalogenase 97.9 0.0055 1.2E-07 78.0 30.9 271 141-488 578-889 (1057)
261 PRK00178 tolB translocation pr 97.9 0.0022 4.8E-08 73.8 24.9 51 214-273 180-234 (430)
262 KOG2321 WD40 repeat protein [G 97.9 0.00012 2.6E-09 82.2 13.4 156 144-349 148-311 (703)
263 KOG2139 WD40 repeat protein [G 97.9 0.002 4.3E-08 69.1 21.5 127 193-345 100-231 (445)
264 KOG1409 Uncharacterized conser 97.9 0.00061 1.3E-08 72.5 17.6 226 142-487 36-270 (404)
265 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.013 2.8E-07 65.2 28.7 69 425-494 253-338 (352)
266 KOG1523 Actin-related protein 97.9 0.00074 1.6E-08 71.4 17.5 112 418-529 99-239 (361)
267 PRK11756 exonuclease III; Prov 97.8 6.1E-05 1.3E-09 81.0 9.6 127 555-718 2-135 (268)
268 KOG3881 Uncharacterized conser 97.8 0.00048 1E-08 74.5 16.0 178 123-346 139-326 (412)
269 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.015 3.2E-07 64.7 28.4 261 213-533 27-337 (352)
270 COG5170 CDC55 Serine/threonine 97.8 0.00034 7.3E-09 73.3 14.3 77 191-270 26-117 (460)
271 PRK04792 tolB translocation pr 97.8 0.0033 7.1E-08 72.8 24.4 51 214-273 199-253 (448)
272 PF00400 WD40: WD domain, G-be 97.8 3.9E-05 8.4E-10 56.4 5.5 37 449-485 1-39 (39)
273 KOG1409 Uncharacterized conser 97.8 0.00059 1.3E-08 72.7 16.2 78 449-526 187-270 (404)
274 PF13360 PQQ_2: PQQ-like domai 97.8 0.0083 1.8E-07 62.6 24.1 96 430-528 122-232 (238)
275 KOG0280 Uncharacterized conser 97.7 0.0002 4.4E-09 74.7 10.8 106 425-530 127-246 (339)
276 KOG2695 WD40 repeat protein [G 97.7 8E-05 1.7E-09 79.1 7.9 198 99-349 185-385 (425)
277 PRK05421 hypothetical protein; 97.7 0.00022 4.9E-09 76.5 11.4 44 676-719 134-178 (263)
278 TIGR03395 sphingomy sphingomye 97.7 0.00043 9.4E-09 75.0 13.5 76 641-719 88-169 (283)
279 KOG3914 WD repeat protein WDR4 97.6 0.00012 2.6E-09 79.4 7.6 98 437-535 129-232 (390)
280 PF13360 PQQ_2: PQQ-like domai 97.6 0.008 1.7E-07 62.7 20.9 195 202-490 35-234 (238)
281 COG2706 3-carboxymuconate cycl 97.6 0.14 3E-06 55.6 29.7 248 191-487 39-321 (346)
282 KOG2695 WD40 repeat protein [G 97.5 0.00014 3E-09 77.4 6.5 108 420-528 253-378 (425)
283 PF08450 SGL: SMP-30/Gluconola 97.5 0.069 1.5E-06 56.4 27.2 56 421-476 185-244 (246)
284 COG3292 Predicted periplasmic 97.5 0.0058 1.3E-07 69.4 19.1 300 117-482 195-527 (671)
285 KOG1064 RAVE (regulator of V-A 97.5 0.00052 1.1E-08 85.9 11.1 138 420-563 2252-2399(2439)
286 COG5354 Uncharacterized protei 97.4 0.024 5.2E-07 63.6 22.5 109 419-527 274-396 (561)
287 PF10282 Lactonase: Lactonase, 97.3 0.1 2.3E-06 58.2 26.9 207 192-486 87-321 (345)
288 PF10282 Lactonase: Lactonase, 97.3 0.15 3.3E-06 56.9 27.9 251 193-526 38-322 (345)
289 PRK01029 tolB translocation pr 97.3 0.032 6.9E-07 64.3 22.8 66 424-489 331-405 (428)
290 TIGR00633 xth exodeoxyribonucl 97.2 0.0019 4.2E-08 68.5 10.5 37 554-594 1-38 (255)
291 PRK01029 tolB translocation pr 97.2 0.05 1.1E-06 62.7 22.4 103 424-526 285-403 (428)
292 PRK11138 outer membrane biogen 97.2 0.097 2.1E-06 59.5 24.5 95 430-527 256-354 (394)
293 KOG1354 Serine/threonine prote 97.1 0.008 1.7E-07 64.3 13.9 105 422-527 216-360 (433)
294 KOG0280 Uncharacterized conser 97.0 0.0059 1.3E-07 64.1 11.6 115 194-341 124-242 (339)
295 TIGR00195 exoDNase_III exodeox 97.0 0.004 8.7E-08 66.3 10.8 37 554-594 1-37 (254)
296 KOG2041 WD40 repeat protein [G 97.0 0.068 1.5E-06 62.0 20.6 79 192-270 15-101 (1189)
297 COG4946 Uncharacterized protei 97.0 0.96 2.1E-05 50.8 28.1 125 191-348 359-485 (668)
298 KOG2756 Predicted Mg2+-depende 96.9 0.0071 1.5E-07 62.6 10.7 40 680-719 195-234 (349)
299 KOG2315 Predicted translation 96.8 0.15 3.3E-06 58.0 21.3 70 423-492 315-395 (566)
300 PRK13911 exodeoxyribonuclease 96.8 0.012 2.6E-07 62.6 12.3 38 554-595 1-39 (250)
301 KOG4714 Nucleoporin [Nuclear s 96.8 0.0016 3.4E-08 67.1 4.9 72 193-271 181-255 (319)
302 KOG0309 Conserved WD40 repeat- 96.7 0.0048 1E-07 71.4 8.8 68 196-271 163-233 (1081)
303 PF08450 SGL: SMP-30/Gluconola 96.7 0.98 2.1E-05 47.6 26.1 87 420-506 134-232 (246)
304 PRK04043 tolB translocation pr 96.7 0.23 4.9E-06 57.1 22.4 71 193-272 189-267 (419)
305 smart00476 DNaseIc deoxyribonu 96.7 0.014 3.1E-07 62.7 11.8 128 553-701 17-154 (276)
306 KOG4497 Uncharacterized conser 96.7 0.02 4.4E-07 60.9 12.4 65 197-271 14-80 (447)
307 smart00320 WD40 WD40 repeats. 96.6 0.0042 9.1E-08 43.0 5.0 37 232-268 3-40 (40)
308 PF15492 Nbas_N: Neuroblastoma 96.6 0.19 4.2E-06 53.1 18.9 72 195-269 47-126 (282)
309 COG3292 Predicted periplasmic 96.6 0.18 3.8E-06 57.9 19.5 110 126-265 158-270 (671)
310 COG3568 ElsH Metal-dependent h 96.5 0.025 5.4E-07 59.6 11.7 55 657-718 101-158 (259)
311 PF07433 DUF1513: Protein of u 96.5 0.75 1.6E-05 49.9 23.1 68 197-270 10-85 (305)
312 KOG1912 WD40 repeat protein [G 96.4 0.56 1.2E-05 55.5 22.7 110 142-279 25-152 (1062)
313 PF15492 Nbas_N: Neuroblastoma 96.4 1.2 2.7E-05 47.2 23.1 68 197-271 3-74 (282)
314 COG0708 XthA Exonuclease III [ 96.3 0.021 4.6E-07 60.3 9.7 110 555-703 2-113 (261)
315 KOG1645 RING-finger-containing 96.2 0.11 2.4E-06 56.9 15.0 72 191-271 193-267 (463)
316 PF11768 DUF3312: Protein of u 96.2 0.021 4.5E-07 65.6 9.7 71 191-271 259-330 (545)
317 COG2706 3-carboxymuconate cycl 96.2 2.6 5.6E-05 46.1 27.6 117 193-341 90-222 (346)
318 COG4946 Uncharacterized protei 96.1 2.4 5.2E-05 47.8 24.4 108 420-527 360-478 (668)
319 PRK04043 tolB translocation pr 96.0 2.2 4.9E-05 49.0 25.1 99 426-525 283-397 (419)
320 KOG2314 Translation initiation 96.0 1.8 4E-05 49.5 23.1 104 421-526 447-573 (698)
321 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.25 5.4E-06 45.3 13.2 90 427-520 10-108 (111)
322 PLN03144 Carbon catabolite rep 95.6 0.06 1.3E-06 63.8 10.5 31 689-719 417-447 (606)
323 KOG4714 Nucleoporin [Nuclear s 95.5 0.016 3.5E-07 59.9 4.7 66 461-526 181-254 (319)
324 KOG2114 Vacuolar assembly/sort 95.5 0.99 2.1E-05 54.2 19.5 80 420-501 172-259 (933)
325 smart00320 WD40 WD40 repeats. 95.5 0.036 7.8E-07 38.1 5.2 36 450-485 3-40 (40)
326 KOG2444 WD40 repeat protein [G 95.4 0.033 7.1E-07 57.0 6.4 97 431-527 71-178 (238)
327 KOG4532 WD40-like repeat conta 95.3 1 2.2E-05 47.3 16.7 73 194-271 161-234 (344)
328 KOG1275 PAB-dependent poly(A) 95.2 0.06 1.3E-06 64.3 8.5 96 433-528 150-256 (1118)
329 KOG2041 WD40 repeat protein [G 95.1 1.4 3E-05 51.8 18.5 108 148-269 33-144 (1189)
330 KOG3621 WD40 repeat-containing 95.0 8 0.00017 45.9 24.6 115 135-271 38-155 (726)
331 KOG2066 Vacuolar assembly/sort 94.9 0.19 4E-06 59.6 11.5 95 430-527 82-188 (846)
332 KOG1912 WD40 repeat protein [G 94.9 0.26 5.7E-06 58.1 12.5 47 205-259 439-485 (1062)
333 PF04762 IKI3: IKI3 family; I 94.7 8.9 0.00019 48.6 26.5 68 191-267 75-147 (928)
334 PF07433 DUF1513: Protein of u 94.7 4.3 9.4E-05 44.1 20.3 55 197-258 56-116 (305)
335 KOG2066 Vacuolar assembly/sort 94.7 0.64 1.4E-05 55.3 14.9 110 200-350 80-197 (846)
336 KOG3621 WD40 repeat-containing 94.2 9.4 0.0002 45.3 22.9 114 198-341 40-155 (726)
337 KOG0882 Cyclophilin-related pe 94.2 0.33 7.1E-06 54.1 10.6 75 191-271 9-85 (558)
338 COG3386 Gluconolactonase [Carb 94.2 6.8 0.00015 43.0 21.0 57 421-477 214-275 (307)
339 COG5170 CDC55 Serine/threonine 94.0 0.67 1.5E-05 49.3 11.9 108 418-527 171-310 (460)
340 KOG2338 Transcriptional effect 93.7 0.15 3.4E-06 57.7 7.2 74 646-719 204-282 (495)
341 PRK15251 cytolethal distending 93.6 0.97 2.1E-05 48.3 12.6 39 675-719 140-178 (271)
342 COG5354 Uncharacterized protei 93.3 5 0.00011 45.7 17.9 50 478-527 254-307 (561)
343 PF04053 Coatomer_WDAD: Coatom 93.3 15 0.00033 42.4 22.7 61 193-267 34-94 (443)
344 KOG1645 RING-finger-containing 93.2 0.28 6.1E-06 53.9 7.9 88 417-505 191-288 (463)
345 KOG1832 HIV-1 Vpr-binding prot 93.1 0.068 1.5E-06 63.4 3.3 73 191-271 1101-1176(1516)
346 PF11768 DUF3312: Protein of u 92.9 0.37 8E-06 55.7 8.8 68 419-487 259-329 (545)
347 KOG2444 WD40 repeat protein [G 92.3 0.47 1E-05 48.8 7.6 105 140-271 68-178 (238)
348 KOG4649 PQQ (pyrrolo-quinoline 92.1 18 0.00039 38.2 22.1 107 203-350 23-133 (354)
349 KOG2114 Vacuolar assembly/sort 92.0 3.4 7.4E-05 49.8 15.2 127 191-349 125-252 (933)
350 COG3386 Gluconolactonase [Carb 91.9 16 0.00036 40.0 19.7 95 419-513 162-272 (307)
351 PF14783 BBS2_Mid: Ciliary BBS 91.6 1.1 2.3E-05 41.3 8.4 55 204-269 16-70 (111)
352 KOG1920 IkappaB kinase complex 91.6 38 0.00083 42.9 23.7 66 191-266 68-135 (1265)
353 KOG2079 Vacuolar assembly/sort 91.4 0.44 9.5E-06 58.4 7.2 69 191-269 130-202 (1206)
354 cd00216 PQQ_DH Dehydrogenases 91.2 36 0.00079 39.9 26.6 69 203-279 61-137 (488)
355 PF08553 VID27: VID27 cytoplas 91.0 5.4 0.00012 49.0 16.0 65 421-486 579-646 (794)
356 PTZ00297 pantothenate kinase; 90.4 3.1 6.6E-05 54.9 14.1 69 644-717 103-177 (1452)
357 KOG4640 Anaphase-promoting com 90.3 0.92 2E-05 52.7 8.2 73 192-273 21-95 (665)
358 PF06433 Me-amine-dh_H: Methyl 90.0 35 0.00076 37.8 19.8 106 213-352 17-138 (342)
359 KOG2079 Vacuolar assembly/sort 89.7 0.66 1.4E-05 56.9 6.8 91 433-525 102-202 (1206)
360 KOG3873 Sphingomyelinase famil 89.5 0.76 1.7E-05 50.1 6.4 106 636-780 73-188 (422)
361 KOG4532 WD40-like repeat conta 89.3 3.7 8.1E-05 43.2 11.0 78 193-273 205-285 (344)
362 KOG3617 WD40 and TPR repeat-co 89.2 2.5 5.5E-05 50.6 10.7 68 194-270 62-131 (1416)
363 KOG1832 HIV-1 Vpr-binding prot 89.1 0.53 1.2E-05 56.3 5.3 117 415-536 1097-1224(1516)
364 PF04841 Vps16_N: Vps16, N-ter 89.1 47 0.001 38.1 26.2 49 214-271 62-110 (410)
365 KOG0882 Cyclophilin-related pe 88.9 7.5 0.00016 43.8 13.5 163 188-352 142-317 (558)
366 PF12894 Apc4_WD40: Anaphase-p 88.2 1.3 2.8E-05 34.2 5.2 32 191-222 11-42 (47)
367 PF08553 VID27: VID27 cytoplas 87.8 2.6 5.7E-05 51.6 10.2 93 432-525 544-646 (794)
368 PRK13616 lipoprotein LpqB; Pro 87.8 28 0.0006 41.9 18.7 61 423-483 500-564 (591)
369 PF00780 CNH: CNH domain; Int 86.6 48 0.001 35.2 24.1 61 201-271 5-65 (275)
370 KOG4640 Anaphase-promoting com 85.9 4 8.7E-05 47.7 9.7 84 424-507 25-114 (665)
371 PF14870 PSII_BNR: Photosynthe 84.7 20 0.00044 39.2 14.2 66 191-268 144-213 (302)
372 cd00216 PQQ_DH Dehydrogenases 84.1 95 0.0021 36.5 27.9 31 465-495 402-433 (488)
373 KOG2395 Protein involved in va 83.0 4.4 9.6E-05 46.5 8.3 90 434-524 398-498 (644)
374 KOG2314 Translation initiation 79.6 11 0.00023 43.7 9.8 106 424-533 215-341 (698)
375 PRK02888 nitrous-oxide reducta 78.8 22 0.00047 42.5 12.4 33 242-274 321-355 (635)
376 PRK02888 nitrous-oxide reducta 76.2 74 0.0016 38.2 15.8 67 420-487 321-404 (635)
377 PF14583 Pectate_lyase22: Olig 75.3 1.5E+02 0.0033 33.5 25.2 68 198-274 42-114 (386)
378 PF00780 CNH: CNH domain; Int 73.8 1.3E+02 0.0027 31.9 23.7 61 141-223 6-66 (275)
379 KOG4649 PQQ (pyrrolo-quinoline 71.1 41 0.0009 35.6 10.7 98 433-531 26-128 (354)
380 KOG1275 PAB-dependent poly(A) 68.9 9.6 0.00021 46.5 6.3 56 432-487 189-254 (1118)
381 KOG1916 Nuclear protein, conta 67.5 6.2 0.00013 47.9 4.4 92 436-527 201-324 (1283)
382 PF12894 Apc4_WD40: Anaphase-p 66.7 14 0.00031 28.5 4.9 29 241-269 11-40 (47)
383 PF04762 IKI3: IKI3 family; I 66.1 3.8E+02 0.0082 34.3 27.6 105 424-529 214-336 (928)
384 PF03178 CPSF_A: CPSF A subuni 65.1 1.1E+02 0.0025 33.4 13.8 104 421-526 90-202 (321)
385 PF04841 Vps16_N: Vps16, N-ter 65.1 69 0.0015 36.7 12.3 50 441-490 62-112 (410)
386 KOG1916 Nuclear protein, conta 65.1 10 0.00022 46.2 5.6 64 468-531 194-270 (1283)
387 KOG1900 Nuclear pore complex, 63.6 60 0.0013 41.7 11.9 67 419-487 178-272 (1311)
388 KOG2395 Protein involved in va 62.7 19 0.00042 41.5 6.9 68 193-269 432-499 (644)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 61.8 34 0.00074 39.2 8.9 38 469-506 79-116 (415)
390 PLN00033 photosystem II stabil 58.5 3.3E+02 0.0071 31.1 16.5 126 397-523 252-396 (398)
391 COG0823 TolB Periplasmic compo 58.1 30 0.00065 39.9 7.7 101 424-527 242-354 (425)
392 PF05694 SBP56: 56kDa selenium 56.3 2.5E+02 0.0055 32.3 14.2 29 420-448 312-342 (461)
393 PF04053 Coatomer_WDAD: Coatom 55.1 89 0.0019 36.2 11.0 96 424-525 73-172 (443)
394 KOG2377 Uncharacterized conser 54.4 1.3E+02 0.0029 34.4 11.4 131 119-271 10-141 (657)
395 PF10313 DUF2415: Uncharacteri 52.1 37 0.00081 25.7 4.7 32 192-223 1-35 (43)
396 PF08596 Lgl_C: Lethal giant l 51.5 4.2E+02 0.0091 30.3 23.9 79 193-271 3-116 (395)
397 PF08596 Lgl_C: Lethal giant l 49.9 96 0.0021 35.4 10.0 69 418-486 85-172 (395)
398 KOG3870 Uncharacterized conser 49.6 6.3 0.00014 43.9 0.4 17 759-775 349-365 (434)
399 PF07569 Hira: TUP1-like enhan 48.9 88 0.0019 32.6 8.8 75 135-222 15-96 (219)
400 PF03178 CPSF_A: CPSF A subuni 47.9 1.7E+02 0.0038 31.9 11.6 115 128-270 84-202 (321)
401 PF12341 DUF3639: Protein of u 47.8 40 0.00087 22.9 3.9 25 460-484 2-26 (27)
402 PF05096 Glu_cyclase_2: Glutam 47.6 3.2E+02 0.007 29.3 12.8 103 423-526 48-157 (264)
403 PF07494 Reg_prop: Two compone 47.1 36 0.00078 22.1 3.6 21 241-261 4-24 (24)
404 COG3391 Uncharacterized conser 46.2 4.4E+02 0.0095 29.8 14.7 69 193-271 117-191 (381)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 44.2 1.3E+02 0.0028 34.5 9.9 77 191-275 307-403 (415)
406 COG5276 Uncharacterized conser 43.2 3.6E+02 0.0078 29.5 12.1 96 433-529 99-202 (370)
407 KOG4499 Ca2+-binding protein R 43.2 1.5E+02 0.0032 31.2 9.0 86 424-509 162-264 (310)
408 PF07569 Hira: TUP1-like enhan 42.9 1.4E+02 0.0031 31.0 9.2 73 192-269 13-94 (219)
409 KOG4499 Ca2+-binding protein R 42.2 1.1E+02 0.0023 32.2 7.8 45 426-470 218-264 (310)
410 PF06433 Me-amine-dh_H: Methyl 41.8 1.3E+02 0.0029 33.4 9.0 70 197-275 243-325 (342)
411 KOG1008 Uncharacterized conser 40.1 14 0.0003 43.5 1.3 96 149-269 127-224 (783)
412 PF11715 Nup160: Nucleoporin N 37.6 58 0.0012 38.8 6.1 31 193-223 216-250 (547)
413 KOG3616 Selective LIM binding 37.3 60 0.0013 39.0 5.8 69 193-271 16-84 (1636)
414 TIGR03075 PQQ_enz_alc_DH PQQ-d 36.7 1.2E+02 0.0026 36.0 8.5 26 253-278 473-498 (527)
415 KOG1900 Nuclear pore complex, 36.2 1.7E+02 0.0037 37.8 9.8 78 191-271 178-273 (1311)
416 PF08728 CRT10: CRT10; InterP 36.0 3.1E+02 0.0067 33.7 11.6 113 148-269 121-245 (717)
417 TIGR03074 PQQ_membr_DH membran 34.5 1E+03 0.022 29.8 17.6 69 202-279 259-353 (764)
418 TIGR03118 PEPCTERM_chp_1 conse 34.1 6.7E+02 0.015 27.6 21.4 64 435-499 217-292 (336)
419 KOG1920 IkappaB kinase complex 34.0 3.1E+02 0.0068 35.3 11.3 72 195-271 245-323 (1265)
420 PF07995 GSDH: Glucose / Sorbo 33.9 3.8E+02 0.0082 29.6 11.5 57 421-477 3-71 (331)
421 COG4257 Vgb Streptogramin lyas 33.8 6.2E+02 0.013 27.5 12.0 34 553-586 245-283 (353)
422 PF10647 Gmad1: Lipoprotein Lp 33.6 5.2E+02 0.011 27.3 12.0 65 193-268 25-93 (253)
423 PRK13684 Ycf48-like protein; P 33.5 1.6E+02 0.0034 32.7 8.4 67 191-266 172-239 (334)
424 PF05096 Glu_cyclase_2: Glutam 32.8 6.5E+02 0.014 27.0 20.6 79 242-350 45-128 (264)
425 PF10168 Nup88: Nuclear pore c 32.0 7.8E+02 0.017 30.5 14.5 79 193-271 86-180 (717)
426 PLN00033 photosystem II stabil 31.7 7.2E+02 0.016 28.4 13.3 64 421-484 329-396 (398)
427 PF11715 Nup160: Nucleoporin N 31.7 56 0.0012 38.9 4.7 29 429-457 229-258 (547)
428 TIGR02604 Piru_Ver_Nterm putat 30.7 2.2E+02 0.0047 32.0 9.0 73 193-270 15-99 (367)
429 PF10313 DUF2415: Uncharacteri 30.5 1.2E+02 0.0026 23.0 4.6 30 242-271 1-34 (43)
430 PF12234 Rav1p_C: RAVE protein 29.3 7E+02 0.015 30.4 13.0 92 469-577 41-139 (631)
431 KOG4441 Proteins containing BT 27.5 2.2E+02 0.0049 34.2 8.8 90 441-530 445-545 (571)
432 PF14870 PSII_BNR: Photosynthe 26.9 8.7E+02 0.019 26.6 16.1 102 419-520 144-255 (302)
433 PHA02713 hypothetical protein; 26.8 2.3E+02 0.0049 34.0 8.7 78 441-518 433-523 (557)
434 KOG1008 Uncharacterized conser 26.1 45 0.00098 39.5 2.4 85 439-524 128-223 (783)
435 TIGR03075 PQQ_enz_alc_DH PQQ-d 26.0 3.7E+02 0.008 32.0 10.2 62 430-491 69-143 (527)
436 PF14761 HPS3_N: Hermansky-Pud 24.7 8.1E+02 0.017 25.5 12.8 124 204-341 29-164 (215)
437 KOG4441 Proteins containing BT 24.3 2.9E+02 0.0063 33.2 8.9 99 433-531 336-452 (571)
438 PF07676 PD40: WD40-like Beta 23.8 2.6E+02 0.0056 19.8 5.4 27 241-267 8-38 (39)
439 COG0217 Uncharacterized conser 23.8 1.2E+02 0.0026 31.9 4.7 75 619-697 66-145 (241)
440 PRK13616 lipoprotein LpqB; Pro 23.4 1.4E+03 0.03 27.7 20.1 97 421-518 449-560 (591)
441 COG3490 Uncharacterized protei 22.7 5.1E+02 0.011 28.2 9.1 56 427-484 121-186 (366)
442 PF02897 Peptidase_S9_N: Proly 22.7 7.3E+02 0.016 28.0 11.6 103 137-267 130-255 (414)
443 PF13570 PQQ_3: PQQ-like domai 22.6 2E+02 0.0043 20.8 4.6 23 465-487 17-39 (40)
444 PF10515 APP_amyloid: beta-amy 22.3 29 0.00063 27.2 -0.0 6 822-827 45-50 (52)
445 PF03022 MRJP: Major royal jel 21.2 8.3E+02 0.018 26.4 11.0 73 422-494 3-104 (287)
446 TIGR02276 beta_rpt_yvtn 40-res 20.9 3.2E+02 0.0068 19.4 5.7 23 201-223 1-24 (42)
447 PF03088 Str_synth: Strictosid 20.8 5.9E+02 0.013 22.5 8.1 34 212-254 36-69 (89)
448 smart00564 PQQ beta-propeller 20.1 1.8E+02 0.0039 19.6 3.8 22 430-451 6-28 (33)
449 COG3490 Uncharacterized protei 20.0 2.7E+02 0.0058 30.3 6.4 62 198-267 120-186 (366)
No 1
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-64 Score=567.02 Aligned_cols=273 Identities=34% Similarity=0.578 Sum_probs=246.9
Q ss_pred CCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCc-ccccccccCC--C---CCceEEEEEe
Q 003217 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQ-DALISWLGSA--A---SDVGIVVVGL 589 (838)
Q Consensus 516 ~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~-~~l~~wl~~~--~---~~~di~vig~ 589 (838)
.|..+.+ ++|+...+..+|.++..+|+...+++||+||||||+..+.. ++|.+||... . ..+|||||||
T Consensus 506 ~q~~v~L-----~dpv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVIL-----YDPVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhh-----cCchhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 3455544 34577888999999999999999999999999999854433 5899999965 2 2489999999
Q ss_pred ecc-cCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCC-CCCEEEEeeeecccEEEEEEEecCCcCccCceeeceee
Q 003217 590 QEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD-GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667 (838)
Q Consensus 590 QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~-~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~ 667 (838)
||+ ++++|.+. ++ ...+.+.|++.|+++|+. ...|+++.|.||+|++|++|+|.+..++|++|+.++++
T Consensus 581 eEvVeLnag~iv-~A--------s~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIV-SA--------STTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCcccee-cc--------ChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 68887542 11 224568999999999987 78999999999999999999999999999999999999
Q ss_pred cccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCC
Q 003217 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNP 747 (838)
Q Consensus 668 ~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (838)
|||||+.||||||+|||.+++|+|||||+||||+++|+++||.||.+|.++|+|+++.
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcc
Q 003217 748 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827 (838)
Q Consensus 748 ~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~ 827 (838)
.|.+||+|||||||||||++ ++||++++|.+++|+.|+++|||+++|.+|.+|.||.|++|+|+|||||
T Consensus 710 ----------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKy 778 (1080)
T KOG0566|consen 710 ----------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKY 778 (1080)
T ss_pred ----------cccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccc
Confidence 36789999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 003217 828 EKHLAGLA 835 (838)
Q Consensus 828 ~~~~~~~~ 835 (838)
|.||.+|.
T Consensus 779 D~gTd~YD 786 (1080)
T KOG0566|consen 779 DPGTDDYD 786 (1080)
T ss_pred cCCCCccc
Confidence 99999996
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=3.3e-58 Score=513.25 Aligned_cols=193 Identities=33% Similarity=0.597 Sum_probs=173.5
Q ss_pred hhHHHHHhhhcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEec
Q 003217 617 HWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNC 696 (838)
Q Consensus 617 ~~w~~~~~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~ 696 (838)
|+|...+.........|++|.++||+||+|+||||+++.++|++|++++|+||++|.+||||||+|||+|++++||||||
T Consensus 348 ~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~ 427 (621)
T PLN03191 348 QLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCS 427 (621)
T ss_pred hhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEe
Confidence 44555555556566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcc--hHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceee
Q 003217 697 HFAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (838)
Q Consensus 697 HLaa~~~--~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (838)
|||||++ ++++||+||.+|++++.|...... .....|.+||+||||||||||
T Consensus 428 HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~--------------------------~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 428 HLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT--------------------------DQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred ccccccccchHHHHHHHHHHHHhccccCccccc--------------------------CCCccccccceEEEecCcccc
Confidence 9999875 578999999999999999742210 001236789999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccC
Q 003217 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836 (838)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~ 836 (838)
|++ ++++++++|.+++|+.||++|||+++|++|++|.||+|++|+|||||||++||+.|.+
T Consensus 482 Idl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg 542 (621)
T PLN03191 482 LNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVG 542 (621)
T ss_pred ccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccc
Confidence 996 8999999999999999999999999999999999999999999999999999999974
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=2e-55 Score=477.75 Aligned_cols=245 Identities=36% Similarity=0.646 Sum_probs=216.9
Q ss_pred ceeeEEEEEEeCCCC-CCcccccccccCCC-----CCceEEEEEeecc-cCccchhhhhhhhhhccCCCCcchhhHHHHH
Q 003217 551 NLKILAGTWNVGQGR-ASQDALISWLGSAA-----SDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (838)
Q Consensus 551 ~~~i~~~twNv~~~~-~~~~~l~~wl~~~~-----~~~di~vig~QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 623 (838)
.++|+++|||||+.. +++++|.+||.... .+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 478999999999875 55789999998632 5689999999999 454332211 1234467899999
Q ss_pred hhhcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 624 ~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
...|..+..|.++++.+|+||+|+||+|+++.++|++|+++.+++|+++.+||||||+++|++.+++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99997668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCCh-HH
Q 003217 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY-DE 782 (838)
Q Consensus 704 ~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~-~~ 782 (838)
++++||+||.+|++++.|+.... ..+.++|++||||||||||++ ++ ++
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~------------------------------~~~~~~d~~f~~GDlNyRi~~-~~~~~ 201 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE------------------------------LSQFDHDVVFWFGDLNFRLDS-PSYEE 201 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc------------------------------ccccccceEEEecCcceeecC-CCHHH
Confidence 99999999999999998875321 114579999999999999997 55 89
Q ss_pred HHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCccc-CCCCCcc
Q 003217 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE-KHLAGLA 835 (838)
Q Consensus 783 ~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~-~~~~~~~ 835 (838)
+++++.+++|+.|+++|||+.+|+++++|.||.|++|+|||||||+ .|+++|.
T Consensus 202 v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd 255 (310)
T smart00128 202 VRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGTETYD 255 (310)
T ss_pred HHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCCcccc
Confidence 9999999999999999999999999999999999999999999999 9999875
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-47 Score=407.17 Aligned_cols=266 Identities=32% Similarity=0.472 Sum_probs=235.2
Q ss_pred CCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCcccccccccC---CCCCceEEEEEeecc-cCccchhhhhh
Q 003217 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS---AASDVGIVVVGLQEV-EMGAGFLAMSA 603 (838)
Q Consensus 528 ~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~---~~~~~di~vig~QE~-~~~~~~~~~~~ 603 (838)
++|..-.+.+++..++..|.....+.+|++++|.+++.+ ...++.||.. ...-+|+||+||||+ +++.+.+. ++
T Consensus 6 ~~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sil-s~ 83 (460)
T COG5411 6 YDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSIL-SA 83 (460)
T ss_pred cCCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhc-cC
Confidence 566667777888888899999999999999999998766 6788999996 224489999999997 57665432 11
Q ss_pred hhhhccCCCCcchhhHHHHHhhhcC---CCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCcee
Q 003217 604 AKETVGLEGSAVGHWWLDMIGKILD---DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAV 680 (838)
Q Consensus 604 ~~~~~~~~~~~~~~~w~~~~~~~l~---~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v 680 (838)
.-...-+.|+..+...|+ ..++|.++.+.||+|+.+.||++.+.++.+.+|+...-+||+||..+|||+|
T Consensus 84 -------~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav 156 (460)
T COG5411 84 -------DPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAV 156 (460)
T ss_pred -------CcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceeccccccc
Confidence 112334789999998886 4678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcC
Q 003217 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELS 760 (838)
Q Consensus 681 ~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (838)
+++|.+.++.+||||||||||.+|+++|+.||+.|.+.++|.+.. .+.
T Consensus 157 ~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~--------------------------------~I~ 204 (460)
T COG5411 157 AIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGL--------------------------------RIY 204 (460)
T ss_pred ceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCc--------------------------------eec
Confidence 999999999999999999999999999999999999999998643 367
Q ss_pred cccEEEEeccceeeecCCChHHHHHHhhhcc--hHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCcc
Q 003217 761 EADMVIFLGDFNYRLDGITYDEARDFISQRC--FDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835 (838)
Q Consensus 761 ~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~--~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~ 835 (838)
+||++||+|||||||++ ++++++..+...+ +++|+++|||.+||+.|++|.||.|..|+|||||||+.||.+|.
T Consensus 205 ~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~yd 280 (460)
T COG5411 205 DHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYD 280 (460)
T ss_pred ccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCcccc
Confidence 89999999999999997 8899988887766 88999999999999999999999999999999999999999885
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-40 Score=342.49 Aligned_cols=326 Identities=18% Similarity=0.225 Sum_probs=250.0
Q ss_pred cCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 141 TEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 141 ~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
++.+|.+| .|.++|+||+.+-.+. |+-..| .++|.|++++|||+.||||+.||+|++||
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~-------------------~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPL-------------------FTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcc-------------------eeecCC-ccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45577774 5999999999763221 222344 88999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecC-----CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-----G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
..+|. +....|.||+.+|++++|-|- .+ |+|+|.||+|||||+..+.+.+.+.
T Consensus 186 pktg~-------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-------------- 244 (480)
T KOG0271|consen 186 PKTGQ-------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-------------- 244 (480)
T ss_pred CCCCC-------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--------------
Confidence 99885 566789999999999999763 33 8999999999999997655544433
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCc---ccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP---DFAME 369 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~---~~~~~ 369 (838)
+| +..|.|+..+ +.+.+++++ |+||++|++..|.+++.|.+|++.++.++++... ...++
T Consensus 245 -----gH----------T~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 245 -----GH----------TASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred -----cC----------ccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 23 5568888876 356788887 7899999999999999999999998887776421 11111
Q ss_pred ccee-eEEEecCCCCccee--eeeEeecCcceeeecCCcEEEEec----c---CccccCCCceEEEEEcCCCc-EEEEEC
Q 003217 370 DEFK-TKIVTSSKKDKAQS--SFGFFQRSRNAIMGAADAVRRVAA----K---GGFGDDNRRTEALTTSIDGM-IWTGGA 438 (838)
Q Consensus 370 ~~~~-~~~~s~~~~~~~~~--s~~~~~~~~~~~~g~~~~v~~v~~----~---g~~~~~~~~v~ala~S~dg~-l~Sgs~ 438 (838)
..-+ .+-.+.. +.++.. ....-+.+.....|+.|...-+|. + ....+|..-|..+.||||++ |+|+|-
T Consensus 309 ~t~~~~~~~se~-~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 309 HTGRKPKSFSEE-QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred cccccCCChHHH-HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence 1100 0000000 000000 000111123456777777666664 1 23457889999999999998 799999
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEE
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIF 512 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~ 512 (838)
|+.||+||. +|+.+.+|.||-.+|+.++. |.+.|+|||.|.|+++||+. .++...|.||.+.|.++. +||+.++
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 999999999 89999999999999999975 67799999999999999998 467889999999999997 5999999
Q ss_pred EEcCCCCeeeee
Q 003217 513 TLANHGGIRGWN 524 (838)
Q Consensus 513 S~S~DgtIrlWd 524 (838)
||+.|+.+|+|.
T Consensus 468 sggkdkv~~lw~ 479 (480)
T KOG0271|consen 468 SGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEeec
Confidence 999999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-35 Score=307.74 Aligned_cols=318 Identities=17% Similarity=0.249 Sum_probs=222.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|+|+.|+||+-|.|+|+||+.+. .+..+.+||...|.+|+++|||+ |+||+.||+|++||.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCC--------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 789999999999999999999999999999997 56788999999999999999998 899999999999999
Q ss_pred CCcceee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
.+++... .+..+..++.+++-++- -..+...++++++ |++|+|||+..|.++.+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~------------------------hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPL------------------------HLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCCCcccccccCcccceeEEeeccc------------------------ccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 8765432 23333334333311110 0112334566665 78999999999999999
Q ss_pred EecCCceEEeeecccC---cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-------cCcccc
Q 003217 348 FNIDGQIENRVDMSLL---PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-------KGGFGD 417 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-------~g~~~~ 417 (838)
+.+|...++.+..-.. ...+-|..+| +|.... ++- -..+.||+-.|..++. .|.|..
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIk--vw~a~d-G~~----------~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIK--VWRALD-GKL----------CRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEE--EEEccc-hhH----------HHhhcccchheeeeeccchhhhhcccccc
Confidence 9988775543322110 0111111122 221110 000 0123333333333321 122211
Q ss_pred CCCc--------------eEEEEEcCCCcEEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEE--EEcCCEEEEEeeCC
Q 003217 418 DNRR--------------TEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG 479 (838)
Q Consensus 418 ~~~~--------------v~ala~S~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sl--s~dG~~LasGs~Dg 479 (838)
...+ -+++.-....+|+|||+|.++.+|+. . .+++..+++|..-|+.+ ++|+++||++|.|.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 0000 00111111136999999999999999 3 57999999999999977 46899999999999
Q ss_pred eEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEE
Q 003217 480 IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILA 556 (838)
Q Consensus 480 tIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~ 556 (838)
.|||||.. |+.+.+|.||-+.|+.+++ |.+.|+|+|.|.|+|+|++++.....++..+ +. .+|.
T Consensus 390 SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh-----~D--------EVf~ 456 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH-----AD--------EVFA 456 (480)
T ss_pred ceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC-----Cc--------eEEE
Confidence 99999976 9999999999999999996 6779999999999999999886555544321 11 2888
Q ss_pred EEEEeCCCCC
Q 003217 557 GTWNVGQGRA 566 (838)
Q Consensus 557 ~twNv~~~~~ 566 (838)
..|...+.+.
T Consensus 457 vDwspDG~rV 466 (480)
T KOG0271|consen 457 VDWSPDGQRV 466 (480)
T ss_pred EEecCCCcee
Confidence 8998877655
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=298.95 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=222.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--C-CEEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--G-DLWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G-~L~SgS~DgtIrvW 267 (838)
+.||..+.|+.+++.|+|||.+|.++||+..+. ..+.+|.||+..|.++.|+|. + .|+|||.||+||+|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 789999999999999999999999999999886 678899999999999999997 3 38999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++++......+ .+| ...|..+++.++|..+.+++ |.+-++||++|+..+.
T Consensus 247 ~~~~e~~l~~l-------------------~gH----------~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 247 KLSQETPLQDL-------------------EGH----------LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ccCCCcchhhh-------------------hcc----------hhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 99763322222 222 22456678889999999988 5789999999998876
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCC
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNR 420 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~ 420 (838)
..++|...+. ++.|.+++..+.+|..|..-|+|. +| .+.+|.+
T Consensus 298 ~QEGHs~~v~-------------------------------~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 298 LQEGHSKGVF-------------------------------SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred hhcccccccc-------------------------------eeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 6666654322 245555566666777777777776 23 3567999
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
.|.+|+|||+|+ |++||.|+++||||+. -+++.++.+|.+-|..|.+ .|.+|++++.|++++||... +++++++
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999998 8999999999999995 5789999999999998865 37799999999999999987 6899999
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeeee
Q 003217 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrlWd 524 (838)
.||.+.|.++. .|++.++|+|.|.|+|+|.
T Consensus 427 aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999986 6899999999999999996
No 8
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=283.81 Aligned_cols=269 Identities=22% Similarity=0.360 Sum_probs=207.5
Q ss_pred eEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
++++..+...+.+| -|++|+|||..+.++... -.+| +++|+|+.++. +.|+|||+|.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GH-tGSVLCLqyd~--rviisGSSDs 257 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-------------------LTGH-TGSVLCLQYDE--RVIVSGSSDS 257 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHh-------------------hhcC-CCcEEeeeccc--eEEEecCCCc
Confidence 44444555556555 499999999987654321 2244 89999999974 7999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
|||+||.++| +++.++.+|..+|..+.|+. |.++|+|.|.+|+|||+..... .++. .
T Consensus 258 TvrvWDv~tg--------e~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~-it~r------r------- 314 (499)
T KOG0281|consen 258 TVRVWDVNTG--------EPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTD-ITLR------R------- 314 (499)
T ss_pred eEEEEeccCC--------chhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchH-HHHH------H-------
Confidence 9999999998 67888999999999999986 7899999999999999965321 1110 0
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
.|.+| -..|..+-++ ...|.++ +|.||++|++.|+++++++.+|..-
T Consensus 315 --VLvGH----------rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG------------------ 362 (499)
T KOG0281|consen 315 --VLVGH----------RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG------------------ 362 (499)
T ss_pred --HHhhh----------hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc------------------
Confidence 01222 1223444443 2344444 4789999999999999888655310
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCe
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~ 451 (838)
+. ++.+ .+..++|||.|.|||+||+ .|.|
T Consensus 363 ---------------------------------IA----------------ClQY-r~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 363 ---------------------------------IA----------------CLQY-RDRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred ---------------------------------ce----------------ehhc-cCeEEEecCCCceEEEEeccccHH
Confidence 00 0000 1223789999999999999 7999
Q ss_pred eeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-C---------cccccccccccCEEEEEeCCCEEEEEcCCCCee
Q 003217 452 LQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G---------NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 452 l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g---------~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIr 521 (838)
++.++||..-|.|+-+|.++|++|..||+|++||+. + -|+.++.-|++.|..+.+|.-.++|.+.|.+|-
T Consensus 393 LRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtIL 472 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTIL 472 (499)
T ss_pred HHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEE
Confidence 999999999999999999999999999999999964 2 167889999999999999999999999999999
Q ss_pred eeecCCCCC
Q 003217 522 GWNVTSPGP 530 (838)
Q Consensus 522 lWdl~s~~~ 530 (838)
+||+-...|
T Consensus 473 iWdFl~~~~ 481 (499)
T KOG0281|consen 473 IWDFLNGPP 481 (499)
T ss_pred EEEcCCCCc
Confidence 999876444
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2e-31 Score=274.46 Aligned_cols=231 Identities=19% Similarity=0.269 Sum_probs=184.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
...|+|+.+|. +.++||..|.||++||..+- .+...+.||++.|.|+.|..- -|+|||.|.||||||++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccH--------HHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEecc
Confidence 44799999973 67899999999999999885 567788999999999998652 37899999999999999
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
+++..-++..+ ...|..+.++ .+-.|-++.|.+|++||+.+-.-+
T Consensus 266 tge~l~tlihH-----------------------------ceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~i----- 310 (499)
T KOG0281|consen 266 TGEPLNTLIHH-----------------------------CEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDI----- 310 (499)
T ss_pred CCchhhHHhhh-----------------------------cceeEEEEEe-CCEEEEecCCceeEEEeccCchHH-----
Confidence 87754433221 2334555554 344555555889999998532100
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
. -+.++. +|...|..+.|+.
T Consensus 311 --------------------t-----------------------~rrVLv----------------GHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 311 --------------------T-----------------------LRRVLV----------------GHRAAVNVVDFDD- 330 (499)
T ss_pred --------------------H-----------------------HHHHHh----------------hhhhheeeecccc-
Confidence 0 011222 3334444455533
Q ss_pred CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCC
Q 003217 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg 508 (838)
..|+|+|.|.|||+|+. ++++++++.+|...|-|+-..|+.+++|++|.+|||||.+ |.|++.+.||.+-|.+|.+|.
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 36899999999999999 7999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CEEEEEcCCCCeeeeecCC
Q 003217 509 GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWdl~s 527 (838)
+.++||+.||+||+||+..
T Consensus 411 krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ceeeeccccceEEEEeccc
Confidence 9999999999999999865
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=9.6e-29 Score=250.81 Aligned_cols=269 Identities=17% Similarity=0.212 Sum_probs=216.1
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 138 l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
.+.+.+.+.+ ++|+.+-|||.-+.... .+-| +. ..+|+.+||+|.|+.+|.|+-|+..-
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------haip----l~-s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFTTNKV---------------HAIP----LP-SSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEcccccce---------------eEEe----cC-ceeEEEEEECCCCCeEEecCcCceeE
Confidence 3445666665 77999999998654322 1122 33 67999999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
|+++.+.. .....+....+.||++.+.++.|-+|++|+|||.|.|.-+||++++++...+..
T Consensus 123 iy~ls~~d--~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G---------------- 184 (343)
T KOG0286|consen 123 IYPLSTRD--AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG---------------- 184 (343)
T ss_pred EEeccccc--ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC----------------
Confidence 99998641 112223456789999999999999999999999999999999998766544432
Q ss_pred cccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
| .++|..|...+ ++....+++ |.+.+|||++.+.+.++|.+|..
T Consensus 185 ---H----------~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes--------------------- 230 (343)
T KOG0286|consen 185 ---H----------TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES--------------------- 230 (343)
T ss_pred ---C----------cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc---------------------
Confidence 2 56788888877 666777776 78999999999999888866532
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
.|.+|.|-|+|. +++||+|+++|++|+ ..+.+
T Consensus 231 ----------------------------------------------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 231 ----------------------------------------------DINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred ----------------------------------------------ccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 234556667777 899999999999999 67788
Q ss_pred eEeecC--CccEEEEEE--cCCEEEEEeeCCeEEEEeC-CCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeee
Q 003217 453 QDFQYL--PFAVQCLCT--FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 453 ~tl~~H--~~~V~sls~--dG~~LasGs~DgtIrlWD~-~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWd 524 (838)
..|... ...|+++++ .|++|.+|+.|.++.+||. +++.+..|.||.+.|.+|. +||.-++|||+|.++|||.
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 887642 347888866 6999999999999999995 6889999999999999986 6899999999999999994
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=261.96 Aligned_cols=267 Identities=18% Similarity=0.196 Sum_probs=211.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|..+.+.|+--++++++.|++|++||..++ +....++||+++|.+|+|+..|+ |+|+|.|-.+++||.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 789999999999999999999999999999998 56778999999999999999998 789999999999999
Q ss_pred CCc-ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
++. .+..++.. | ...+.++++-+.+..|.|++ |.+|+.|+..||.++++
T Consensus 180 ~~~~~c~ks~~g-------------------h----------~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 180 DTFFRCIKSLIG-------------------H----------EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred HHHHHHHHHhcC-------------------c----------ccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 762 22111111 1 12345566666677888877 68999999999999999
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~ 421 (838)
|.+|.+++..+....+. .....++.+-..++|. +..+.+|...
T Consensus 231 ~~~h~ewvr~v~v~~DG-------------------------------ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDG-------------------------------TIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ccCchHhEEEEEecCCe-------------------------------eEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 99998865433332211 1122233333344443 1345566666
Q ss_pred eEEEEEcCC---------------C-cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEE
Q 003217 422 TEALTTSID---------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 422 v~ala~S~d---------------g-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (838)
|+++++.|. + .+.+++.|++||+||+ +|.|+-++.+|.++|..+++. |++|+|+..|++++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 776665543 1 3789999999999999 899999999999999999875 99999999999999
Q ss_pred EEeCC-CcccccccccccCEEEEEeCC--CEEEEEcCCCCeeeeec
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRGWNV 525 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrlWdl 525 (838)
+||+. ++|..++.+|...|+++.++. -+++|||-|.++++|..
T Consensus 360 vwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 360 VWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99997 789999999999999999753 38999999999999963
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=274.04 Aligned_cols=363 Identities=18% Similarity=0.181 Sum_probs=246.0
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC--CEEEEE
Q 003217 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS--GVVWSG 209 (838)
Q Consensus 135 ~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg--~~LaSG 209 (838)
+-.+++++. .|.+ |.|+.|+|||+...+.... |++ + .+.|.++.|.|+- .+|++|
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~-----------------fkG--~-gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS-----------------FKG--H-GGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE-----------------ecC--C-CceEEEEEeCCccchhheeec
Confidence 334555533 5554 6799999999987654322 433 2 7789999999865 469999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecC---------
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLK--------- 279 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~--------- 279 (838)
..|+++|+||+.+.. .+..++++|...|++++|++|+. ++|++.|..|.|||+...++...+.
T Consensus 168 ~~D~~v~vwnl~~~~-------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKR-------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred CCCceEEEEEcccCc-------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 999999999998752 35678899999999999999997 8999999999999985422111110
Q ss_pred ---C------------Ccee-----------------------------------eeEEEEeeceeec--cc--------
Q 003217 280 ---P------------EERH-----------------------------------TAALIVERSYIDL--RS-------- 299 (838)
Q Consensus 280 ---~------------~~~~-----------------------------------~~~~~~~~s~~~l--~~-------- 299 (838)
. .+.. +..+.-+..++.. ..
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence 0 0000 0000000000000 00
Q ss_pred --ceeccce----------------------------eee---ecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc--
Q 003217 300 --HLSVNGF----------------------------SSI---LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-- 343 (838)
Q Consensus 300 --~~~~~~~----------------------------~~~---~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~-- 343 (838)
+..+..+ |++ ++.-+.++....+|..+++++ |+++++|-+..+.
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 0000000 000 112234444344556777777 7899999764332
Q ss_pred --EEEEEecCCceEEeeecccC-----cccccccceeeEEEecC----------------CCCcceeeeeEeecCcceee
Q 003217 344 --LLKVFNIDGQIENRVDMSLL-----PDFAMEDEFKTKIVTSS----------------KKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 344 --~l~~l~~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~s~~----------------~~~~~~~s~~~~~~~~~~~~ 400 (838)
++....+|...+..+.++.. ...+-|..+|+|....+ .++|.+.++...++...+.+
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 22333445443334444221 11122444454443321 23555667788888788888
Q ss_pred ecCCcEEEEec------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC
Q 003217 401 GAADAVRRVAA------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS 470 (838)
Q Consensus 401 g~~~~v~~v~~------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~ 470 (838)
|+.|-...+|. .|++.+|.+.|.+|.|++..+ ++++|.|+|||||.+ +..|+++|.||+..|.-.++ +|+
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 88887777765 467788999999999999877 789999999999999 78999999999999997655 788
Q ss_pred EEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 471 QIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 471 ~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|+|+++||-|+||+.+ +.|+.++.+|++.||+++. ....++||+.|+.|.+|.
T Consensus 561 qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999997 6799999999999999884 566889999999999997
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=8e-29 Score=279.94 Aligned_cols=244 Identities=19% Similarity=0.331 Sum_probs=197.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------c-----------CCCCCcceeEEeccccccEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------------L-----------DSDDGFGEVLSWQAHRGPVLSL 247 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~------------~-----------~~~~~~~~~~~l~gH~~~V~sl 247 (838)
...|.|..|++|+.+||-|-.|-.|++|.+.... . .+...-....++.||.+||.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 5579999999999999999999999999987311 0 0011122345688999999999
Q ss_pred EEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEE
Q 003217 248 CISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV 326 (838)
Q Consensus 248 afs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V 326 (838)
.|+|+.+ |+|+|+|++||+|.+.+..+.+.+. +| ...|-.+.++|-|...
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------------------GH----------~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------GH----------LAPVWDVQFAPRGYYF 508 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEec-------------------CC----------CcceeeEEecCCceEE
Confidence 9999998 7999999999999998765544332 22 2234455677778888
Q ss_pred EEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc
Q 003217 327 WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (838)
Q Consensus 327 ~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~ 405 (838)
++++ |+|.++|....-++++.|
T Consensus 509 atas~D~tArLWs~d~~~PlRif--------------------------------------------------------- 531 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIF--------------------------------------------------------- 531 (707)
T ss_pred EecCCCceeeeeecccCCchhhh---------------------------------------------------------
Confidence 8877 578899987654444333
Q ss_pred EEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeE
Q 003217 406 VRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (838)
Q Consensus 406 v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtI 481 (838)
.+|...|.++.|.|+.. +++||.|.|||+||+ +|.+++.|.||..+|.+|+ ++|++|++|+.||.|
T Consensus 532 ----------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 532 ----------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ----------cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 34445566778888876 899999999999999 8999999999999999985 579999999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+|||+. |+++..+.+|++.|.+|.+ ||..|+++|.|++|++||+.....
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999997 7899999999999999985 899999999999999999865433
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=7.5e-28 Score=243.21 Aligned_cols=261 Identities=20% Similarity=0.262 Sum_probs=195.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
+.|.++-+|++..-... .| .+-..|++ | .--|..+++++||.+..|||.|+++|+||++++
T Consensus 35 srDk~ii~W~L~~dd~~-----------~G-~~~r~~~G--H-sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---- 95 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIK-----------YG-VPVRRLTG--H-SHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---- 95 (315)
T ss_pred ccceEEEEEEeccCccc-----------cC-ceeeeeec--c-ceEecceEEccCCceEEeccccceEEEEEecCC----
Confidence 56999999999532110 00 00111333 2 447889999999999999999999999999998
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccce
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 306 (838)
+..+.|.||+.-|.+++|++|.+ ++|||.|+||++|++-+. +.++...+.
T Consensus 96 ----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~------------------------ 146 (315)
T KOG0279|consen 96 ----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS------------------------ 146 (315)
T ss_pred ----cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCC------------------------
Confidence 67888999999999999999986 999999999999998542 223222110
Q ss_pred eeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCC
Q 003217 307 SSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 307 ~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
...-|.|+.++|. ...|++++ |+++++||+++.++...
T Consensus 147 ---~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~------------------------------------ 187 (315)
T KOG0279|consen 147 ---HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT------------------------------------ 187 (315)
T ss_pred ---CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc------------------------------------
Confidence 0234677788776 56788887 68999999987665333
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCcc
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA 461 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~ 461 (838)
+.+|.+.+.++++||||. +++|+.||.+.+||+ ++++++++ .|...
T Consensus 188 -------------------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 188 -------------------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred -------------------------------cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 334556677899999998 589999999999999 79998887 57889
Q ss_pred EEEEEEcCC-EEEEEeeCCeEEEEeCCC-ccccccc----cc---ccCEEE--EEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 462 VQCLCTFGS-QIWVGYMNGIVQVLDLEG-NLLGGWV----AH---SSPVIK--MAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 462 V~sls~dG~-~LasGs~DgtIrlWD~~g-~~i~~l~----gH---~~~V~s--la~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
|.++++..+ +...+..+..|+|||++. .++..++ |. .+.+.| +++ ||+.|++|-+|+.||+|.+..
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 999999765 444445577899999984 4444443 22 123444 454 799999999999999998753
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=241.26 Aligned_cols=258 Identities=16% Similarity=0.220 Sum_probs=199.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
|.|.+||+|...++.+.+. +.+ .+-|..|.+.|+++.||.|+. ..||++|+.++.+
T Consensus 17 ~YDhTIRfWqa~tG~C~rT---------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np- 73 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRT---------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP- 73 (311)
T ss_pred cCcceeeeeehhcCeEEEE---------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-
Confidence 6799999999988665431 112 667999999999999999887 4799999998742
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
..+.++.+|++.|++|.|-.||+ ++|||+||++||||+....+...+.
T Consensus 74 -----~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-------------------------- 122 (311)
T KOG0315|consen 74 -----NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-------------------------- 122 (311)
T ss_pred -----CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--------------------------
Confidence 46889999999999999999999 7999999999999996632211110
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCc
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (838)
..+.|..+...+....+.++. ++.|++||+.+..+...+-+.
T Consensus 123 ----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--------------------------------- 165 (311)
T KOG0315|consen 123 ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--------------------------------- 165 (311)
T ss_pred ----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC---------------------------------
Confidence 134566677766666666665 578999999877664333211
Q ss_pred ceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CC------CeeeEee
Q 003217 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------NRLQDFQ 456 (838)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g------~~l~tl~ 456 (838)
....|.++.+.+||. ++.+..-|++.+|++ ++ +.+..|+
T Consensus 166 ---------------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 166 ---------------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred ---------------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence 111234567778888 455556789999998 43 3556678
Q ss_pred cCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 457 YLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 457 ~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
.|...|+.. ++|+++||++++|.+++||+.++ ++-.++++|..+||.-++ ||+||+|||.|+++|+|++....
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 899988854 77999999999999999999985 567789999999998775 89999999999999999987654
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=269.76 Aligned_cols=373 Identities=19% Similarity=0.248 Sum_probs=245.2
Q ss_pred EEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003217 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (838)
Q Consensus 137 ~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtI 215 (838)
.|.+++..|+. +...-+|+|++.++..... .+. .| .+||.-++|+|.|.+|++|+.||.+
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irs-----------------wKa-~H-e~Pvi~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRS-----------------WKA-IH-EAPVITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHh-----------------Hhh-cc-CCCeEEEEEcCCCceEEeccccceE
Confidence 34455556665 4566899999988654421 111 34 8899999999999999999999999
Q ss_pred EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
+|||+..+ .+...|+||.+.|.++.|.|+-. |++|..|++||+||+.+...++.
T Consensus 130 ~VWdi~~~--------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~--------------- 186 (775)
T KOG0319|consen 130 KVWDIKNG--------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH--------------- 186 (775)
T ss_pred EEEEeeCC--------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH---------------
Confidence 99999987 67899999999999999999864 68999999999999975332110
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeeccc---------
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL--------- 362 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~--------- 362 (838)
.+..| .+.++.++++.++..+.+++ |+.+.|||+.+.+.++++....+++..+-+..
T Consensus 187 ---~~~~H----------~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 187 ---TMILH----------KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred ---HHHhh----------hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 11122 45677888877777666655 67888999977776666542222111000000
Q ss_pred -------C-----------------c----------------------cc---ccc-cce--------------------
Q 003217 363 -------L-----------------P----------------------DF---AME-DEF-------------------- 372 (838)
Q Consensus 363 -------~-----------------~----------------------~~---~~~-~~~-------------------- 372 (838)
. . ++ .++ ++.
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 0 0 00 000 000
Q ss_pred ----eeEEEecCCCCc-----------------ceeeeeEeecCcceeeecCCcEEEEec----------cCccccCCCc
Q 003217 373 ----KTKIVTSSKKDK-----------------AQSSFGFFQRSRNAIMGAADAVRRVAA----------KGGFGDDNRR 421 (838)
Q Consensus 373 ----~~~~~s~~~~~~-----------------~~~s~~~~~~~~~~~~g~~~~v~~v~~----------~g~~~~~~~~ 421 (838)
.+.+.+++..-+ .+-++..+..+....+++.|...++|- .+...+|...
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 001111110000 000111112222334444444333331 1223458889
Q ss_pred eEEEEEcCCCc--EEEEECCCeEEEEcCCC----------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 422 TEALTTSIDGM--IWTGGANGLLLQWDPNG----------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~--l~Sgs~DgtIrlWD~~g----------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
|.+|+++..+- ++++|.|+|+|+|++.. ++..+...|...|+||+. ..+.||+||.|.+.+||+++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 99999977764 79999999999999833 122234469999999865 56799999999999999998
Q ss_pred -CcccccccccccCEEEEEeC--CCEEEEEcCCCCeeeeecCCCCCCchhh-------hhhhhccccccccccceeeEEE
Q 003217 488 -GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSPGPLDSIL-------CKELAGKEFLYTRMENLKILAG 557 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrlWdl~s~~~~d~~~-------~~~l~~r~~~y~~~~~~~i~~~ 557 (838)
.+++.+|.||.-.|++|.+. .+.++|+|.|+|||+|.+.++.++..+- +.+|..+.....+-+. .=.+-
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-dGliK 572 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-DGLIK 572 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-CCcEE
Confidence 67899999999999999975 4589999999999999999887765433 3333333332221111 23355
Q ss_pred EEEeCCCC
Q 003217 558 TWNVGQGR 565 (838)
Q Consensus 558 twNv~~~~ 565 (838)
-||+..+.
T Consensus 573 lWnikt~e 580 (775)
T KOG0319|consen 573 LWNIKTNE 580 (775)
T ss_pred EEeccchh
Confidence 69997553
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.4e-29 Score=261.45 Aligned_cols=256 Identities=15% Similarity=0.164 Sum_probs=210.2
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003217 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaSGs~DGtIrvW 218 (838)
++.|.++ -+|.++||+..+.... ..|++ | ++.|.++.|.|. +..||||+.||++|+|
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~-----------------~~l~g--H-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLL-----------------QTLRG--H-TSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCeEEEeecCCceeEeecCCccee-----------------EEEec--c-ccceeeEEEccCCCccceeeeccCCceeee
Confidence 4466654 4899999998765221 12433 3 779999999997 5799999999999999
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
++++. .++..|.||...|..++|.|+|+ |.|+|.|.|-|+||++++...+-.
T Consensus 247 ~~~~e--------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------------------- 299 (459)
T KOG0272|consen 247 KLSQE--------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------------------- 299 (459)
T ss_pred ccCCC--------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-------------------
Confidence 99986 67888999999999999999999 789999999999999885533211
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
.+| +..|..+++.++|..+.+|+ |..-+|||++||.++-.|.+|...+
T Consensus 300 EGH----------s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I--------------------- 348 (459)
T KOG0272|consen 300 EGH----------SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI--------------------- 348 (459)
T ss_pred ccc----------ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccce---------------------
Confidence 123 45677889999999999988 5677899999999998888765432
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~- 447 (838)
-++.|+|++-++.+|+.|...++|.. -+...|..-|..|.|+| .|+ |+++|.|++++||..
T Consensus 349 ----------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 349 ----------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ----------eeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 23567777888888999998888861 23456888899999998 565 899999999999999
Q ss_pred CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEe
Q 003217 448 NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD 485 (838)
+..+++++.||.+.|.++ ++||..|++++.|++||+|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 679999999999999988 56899999999999999995
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=5.6e-27 Score=265.07 Aligned_cols=240 Identities=19% Similarity=0.294 Sum_probs=188.9
Q ss_pred EEEE-ec-CCCEEEEeCCCCc--cccc--------cccccccCCCCCCCCCCceeeec-CCCCeEEEEEcCCCCEEEEEe
Q 003217 144 QLWA-GG-ENGLRVWNLKELY--DESE--------SDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 144 ~l~~-g~-d~~vrvWd~~~~~--~~~~--------~~~~~~~~~~~~~~~~p~~~~~~-g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+ |. |+.|++|.+.... .... +-+.....+..|+....-+..+- |.+||+.+.|+|+.++|.|+|
T Consensus 391 smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScS 470 (707)
T KOG0263|consen 391 SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCS 470 (707)
T ss_pred chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeecc
Confidence 4555 43 8899999986311 1100 00011112344554444332222 299999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++||+|.+.+- .+....+||..||+.+.|+|.|. ++|||.|+|.|+|..+.....- .
T Consensus 471 ED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-i----------- 530 (707)
T KOG0263|consen 471 EDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-I----------- 530 (707)
T ss_pred CCcceeeeecccc--------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-h-----------
Confidence 9999999999986 56777899999999999999997 8999999999999986532111 1
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
+.+| -++|.|+.+.|+...+++|+ |.++++||+.+|..++.|.+
T Consensus 531 -------fagh----------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G------------------ 575 (707)
T KOG0263|consen 531 -------FAGH----------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG------------------ 575 (707)
T ss_pred -------hccc----------ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC------------------
Confidence 1122 56899999999999999998 68999999999987666543
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~ 447 (838)
|...|.+|++||+|+ |+||+.||.|++||+
T Consensus 576 -------------------------------------------------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 576 -------------------------------------------------HKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred -------------------------------------------------CCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 445577899999998 899999999999999
Q ss_pred -CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 448 -~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+|+.+.++.+|++.|.+|++ ||..|++|+.|.+|+|||+.
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 78999999999999999865 89999999999999999975
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-26 Score=233.35 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=197.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
++.|..++..+. -++|.++|.|.+|.+|++.... -..-...+.+.||...|+.++.++||+ .+|||+|+++|+||
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCc---cccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 889999999876 4899999999999999987641 111234677899999999999999999 47999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+++++....+. +| ..+|.+++++++..+|.+|+ |+||++||+..+... +
T Consensus 92 l~~g~~t~~f~-------------------GH----------~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t 141 (315)
T KOG0279|consen 92 LATGESTRRFV-------------------GH----------TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-T 141 (315)
T ss_pred ecCCcEEEEEE-------------------ec----------CCceEEEEecCCCceeecCCCcceeeeeeecccEEE-E
Confidence 98865443332 23 66899999999999999998 789999998643321 1
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
...+ .+...|.+|.|
T Consensus 142 ~~~~-----------------------------------------------------------------~~~~WVscvrf 156 (315)
T KOG0279|consen 142 IHED-----------------------------------------------------------------SHREWVSCVRF 156 (315)
T ss_pred EecC-----------------------------------------------------------------CCcCcEEEEEE
Confidence 1000 11345667778
Q ss_pred cCCC---cEEEEECCCeEEEEcCC-CCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 428 SIDG---MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 428 S~dg---~l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
+|.. .|+++|.|++||+||+. -+..+++.+|++.|+.+ ++||...++|+.||.+.|||++ ++.+.++ .|...
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 7763 48999999999999995 57888899999999977 5699999999999999999997 7888777 67889
Q ss_pred EEEEEeCCC-EEEEEcCCCCeeeeecCCCCCCchh
Q 003217 501 VIKMAVGAG-YIFTLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 501 V~sla~dg~-~l~S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
|.++++.++ +.+.++++.+|||||+.+...++.+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 999999876 5667889999999999887666554
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.6e-25 Score=238.66 Aligned_cols=328 Identities=15% Similarity=0.181 Sum_probs=223.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---cccccEEEEEEecCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (838)
..-|.|+.|+|||.+++|.+.||+|.++|-.+| +....|. +|++.|.+|+++||++ ++|+|.|.++||
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 668999999999999999999999999999887 5666676 9999999999999997 999999999999
Q ss_pred EECCCcceeeecCC----CceeeeEEEEeeceeecccceec----------cceeeeecCCeEEEEEcCCCCEEEEeC-C
Q 003217 267 WPWEAIEKALSLKP----EERHTAALIVERSYIDLRSHLSV----------NGFSSILTSDIKNLLSDHSRAKVWSAG-F 331 (838)
Q Consensus 267 Wd~~~~~~~~~~~~----~~~~~~~~~~~~s~~~l~~~~~~----------~~~~~~~s~~v~~las~~~~~~V~s~s-~ 331 (838)
||+.+.+...++.. +...+..+.-...++.+...++. ..+..-++..+.+|..++++..+.+++ |
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 99987543322211 12222222222222221111111 111112355688999999999999999 5
Q ss_pred CcEEEEeccCccEEEEE-ecCCceEEeeecccC---ccccccccee----------------------------------
Q 003217 332 LSFALWDARTRELLKVF-NIDGQIENRVDMSLL---PDFAMEDEFK---------------------------------- 373 (838)
Q Consensus 332 ~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~---~~~~~~~~~~---------------------------------- 373 (838)
+.|.-||..+|..-+.. .+|...+.....+.. ...++|+.++
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 78999999888764332 222222122221110 0001111111
Q ss_pred ------eEEEecCCCCc------ceeeeeEeecCcceeeecCCcEEEEec-c-------CccccCCCceEEEEEcCCCc-
Q 003217 374 ------TKIVTSSKKDK------AQSSFGFFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGM- 432 (838)
Q Consensus 374 ------~~~~s~~~~~~------~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-------g~~~~~~~~v~ala~S~dg~- 432 (838)
+.+++..++.. ....+++.+.+..+.+|..|+-..+.. . +.+.+|...+.++++|||+.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 11111111100 012455566667778888887655544 2 23456788899999999998
Q ss_pred EEEEECCCeEEEEcC-CCCe-eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe
Q 003217 433 IWTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~-l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~ 506 (838)
|++|...+.|.+||+ +.+. ...+.-|+..|+|++. +..++|+|+.|-+|.||+++ .+.+....+|...|+.|.+
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 677778889999999 4433 3445569999999975 56799999999999999987 4567778899999999985
Q ss_pred -CCCEEEEEcCCCCeeeeecC
Q 003217 507 -GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 -dg~~l~S~S~DgtIrlWdl~ 526 (838)
|...++|.+.|..||+|++.
T Consensus 582 lde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 582 LDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ecCceEEeccCcceeEEeccc
Confidence 88899999999999999864
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.4e-26 Score=261.60 Aligned_cols=266 Identities=23% Similarity=0.340 Sum_probs=209.6
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 141 ~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+++.|.+ +.|+.+++|+...... .. . .. . ..| ...|.+++|+|+++.|++|+.|++||+||
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~-~~------------~-~~-l--~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKS-NL------------L-RE-L--SGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccc-hh------------h-cc-c--ccc-ccceeeeEECCCCcEEEEecCCceEEEee
Confidence 3555555 4799999999854331 00 0 00 0 123 77899999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
+.... ....+++||...|++++|+|+|+ ++|||.|++|||||+.+++....+.
T Consensus 232 ~~~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~------------------- 285 (456)
T KOG0266|consen 232 LKDDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK------------------- 285 (456)
T ss_pred ccCCC-------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-------------------
Confidence 94431 67789999999999999999997 6899999999999998755433322
Q ss_pred cceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE--EEEEecCCceEEeeecccCcccccccceeeE
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~--l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
+| +..+..++++.++..+++++ |+.|++||+.+++. ++.+..+.
T Consensus 286 ~h----------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------------------- 332 (456)
T KOG0266|consen 286 GH----------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE----------------------- 332 (456)
T ss_pred cc----------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC-----------------------
Confidence 22 55688889999999999988 67899999999984 33322110
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeee
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (838)
... .+..+.|+|++. +++++.|+++++||+ .+.+++
T Consensus 333 -----------------------------------------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 333 -----------------------------------------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred -----------------------------------------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 011 355678999987 899999999999999 689999
Q ss_pred EeecCCccEEEE-----EEcCCEEEEEeeCCeEEEEeCC-Cccccccccc-ccCEEEEEe--CCCEEEEEc--CCCCeee
Q 003217 454 DFQYLPFAVQCL-----CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAV--GAGYIFTLA--NHGGIRG 522 (838)
Q Consensus 454 tl~~H~~~V~sl-----s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla~--dg~~l~S~S--~DgtIrl 522 (838)
++.+|...+.|+ ...|+++++|+.|+.|++||.. +..+..+.+| ...|..+.. ...++++++ .|+.|++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 999999876665 2368899999999999999998 6789999999 888887774 567888888 8999999
Q ss_pred eec
Q 003217 523 WNV 525 (838)
Q Consensus 523 Wdl 525 (838)
|..
T Consensus 451 w~~ 453 (456)
T KOG0266|consen 451 WKY 453 (456)
T ss_pred ecC
Confidence 974
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=246.79 Aligned_cols=296 Identities=18% Similarity=0.272 Sum_probs=210.2
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC---CCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG---VSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 142 ~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g---~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
...+++ +.|.+.|+|++..-... ++. -+ +-..++++.++. ..-|+||+|+.+|..||+|+.||.+|
T Consensus 190 ~~~llasg~~~s~ari~~l~e~~~~-~~~--q~------~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 190 RDGLLASGSGDSTARIWNLLENSNI-GST--QL------VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred hhhhhhccCCccceeeeeehhhccc-cch--hh------hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 444665 34789999999641111 100 00 011122221110 45799999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
+|+..+ ..+.+|--|++||.+|.++..|. |+||+-|+|+-+||..+++....+..++
T Consensus 261 iw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s------------- 318 (524)
T KOG0273|consen 261 IWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS------------- 318 (524)
T ss_pred EEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-------------
Confidence 999987 46778889999999999999998 8999999999999996654322111100
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEE-eCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
.+.-+|... +...+++ +.++.|+++.+.-..+.
T Consensus 319 -------------~~~lDVdW~----~~~~F~ts~td~~i~V~kv~~~~P~----------------------------- 352 (524)
T KOG0273|consen 319 -------------APALDVDWQ----SNDEFATSSTDGCIHVCKVGEDRPV----------------------------- 352 (524)
T ss_pred -------------CCccceEEe----cCceEeecCCCceEEEEEecCCCcc-----------------------------
Confidence 001122221 1112222 22344544433222211
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
.+|.+|...|.++.+.|-|. |+|+|.|+|+|||.. .+.+.
T Consensus 353 --------------------------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 353 --------------------------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred --------------------------------------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 23556777888899999888 689999999999998 78899
Q ss_pred eEeecCCccEEEEEE-----------cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCC
Q 003217 453 QDFQYLPFAVQCLCT-----------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (838)
Q Consensus 453 ~tl~~H~~~V~sls~-----------dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (838)
..|.+|+..|..+.. .+..|++++.|++|++||++ |.++.+|..|+.+|++|++ +|.|++||+.||
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 999999999888742 24589999999999999997 8999999999999999985 699999999999
Q ss_pred CeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCC
Q 003217 519 GIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (838)
Q Consensus 519 tIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (838)
.|.+|+.+.+..... |...+. ||..-||.++.+.
T Consensus 475 ~V~iws~~~~~l~~s------------~~~~~~--Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 475 CVHIWSTKTGKLVKS------------YQGTGG--IFELCWNAAGDKL 508 (524)
T ss_pred eeEeccccchheeEe------------ecCCCe--EEEEEEcCCCCEE
Confidence 999999876433222 222233 8999999987544
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3.3e-26 Score=237.31 Aligned_cols=265 Identities=17% Similarity=0.192 Sum_probs=204.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++++|.+++++||+.|++|++||+++| +...++.||-..|..|++|+--- |+|+++|+.||.||+
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 789999999999999999999999999999998 78889999999999999998654 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+..+-...++ ++. +.|.+|...+.-..|++++ |.++++||++|+..+.+|
T Consensus 223 e~nkvIR~Yh---------------------GHl--------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 223 EYNKVIRHYH---------------------GHL--------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred hhhhhHHHhc---------------------ccc--------ceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence 7644222221 222 2466777777677777776 679999999999999999
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (838)
.+|...+.++ .+-+...++++|+.|+..++|. . -++..|...|
T Consensus 274 ~GH~~~V~~V-------------------------------~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 274 SGHTNPVASV-------------------------------MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred cCCCCcceeE-------------------------------EeecCCCceEEecCCceEEEeeeccCceeEeeeccccee
Confidence 8876543222 2233344667777777777775 1 2455677888
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCC-Cc---cccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GN---LLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~---~i~~l~ 495 (838)
.+++..|... ++|+|.|. |+.|++ +|+.++.+.+|+.-|++++.. ...+++|+..|+|..||-+ |- ..++..
T Consensus 323 ral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred eEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc
Confidence 9999888766 68888886 999999 899888899999999999874 4588899999999999976 42 122121
Q ss_pred --c---cccCEEEEEeC--CCEEEEEcCCCCeeeee
Q 003217 496 --A---HSSPVIKMAVG--AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 --g---H~~~V~sla~d--g~~l~S~S~DgtIrlWd 524 (838)
| ....|.+-.+| |..|+||..|++|++|.
T Consensus 402 qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 1 12345555554 67899999999999997
No 24
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.1e-26 Score=264.19 Aligned_cols=268 Identities=21% Similarity=0.282 Sum_probs=216.9
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
.+.+..++ |.+|++||..+.+...+ ++. +| .+.|.++++...+..|+|||.|.++|+||.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~----------------~l~--GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT----------------RLV--GH-FGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe----------------ecc--CC-CCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 44555554 77999999987664321 121 33 889999999877899999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
.+| ++..++.||.+.|.+|...+ ..+++||.|.+||||+++++.....+ ++|
T Consensus 279 ~sg--------~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~-------------------~~h 330 (537)
T KOG0274|consen 279 STG--------ECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLL-------------------RGH 330 (537)
T ss_pred CCC--------cEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEe-------------------ccc
Confidence 998 78899999999999998755 34789999999999999865432221 112
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
...|+++..+ +..+++++ +++|++||+.+++++++|.+|..
T Consensus 331 ----------~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-------------------------- 372 (537)
T KOG0274|consen 331 ----------TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-------------------------- 372 (537)
T ss_pred ----------cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc--------------------------
Confidence 4567777775 66777776 57899999999999988866533
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CC-CeeeEeec
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG-NRLQDFQY 457 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g-~~l~tl~~ 457 (838)
+|.++.+.....+++|+.|++|++||+ +. +|+.++.+
T Consensus 373 -----------------------------------------~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 373 -----------------------------------------RVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred -----------------------------------------eEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 233444444346899999999999999 56 79999999
Q ss_pred CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 458 LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 458 H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
|..-|.++...+++|.+++.|++|++||.+ +++++++.+ |...|..+......+++++.|+++++||+.+..+...++
T Consensus 412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred CcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhh
Confidence 999999999999999999999999999987 889999999 789999988776789999999999999999877766553
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=223.25 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=197.4
Q ss_pred CCccccCceeEEEEe------------cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCC
Q 003217 126 LRETQIGCFLRTIVC------------TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS 193 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~------------~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~ 193 (838)
+|+..+|.|.|+|.. +++.|.++..-.||+||+.+... .+.+.| .++ +..
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np---------------~Pv~t~--e~h-~kN 85 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP---------------NPVATF--EGH-TKN 85 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC---------------CceeEE--ecc-CCc
Confidence 456666777777643 24455556778999999976432 112223 234 789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCc
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~ 272 (838)
|.++.|..+|++++|||.||++||||+... . +...-.|..+|++|+..|+.. |++|..+|.|||||+...
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~--------~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--------S-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCc--------c-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999999874 2 233345789999999999864 999999999999999654
Q ss_pred ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecC
Q 003217 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (838)
.+...+.++. -..+..+...++|.+++.+.. ++..+|++-+++....|.+
T Consensus 157 ~c~~~liPe~----------------------------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P- 207 (311)
T KOG0315|consen 157 SCTHELIPED----------------------------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP- 207 (311)
T ss_pred ccccccCCCC----------------------------CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE-
Confidence 3333333322 124667788888988888876 5799999876433211110
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
. ..|..|..-+....+|||+
T Consensus 208 ----------------------------~--------------------------------~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 208 ----------------------------V--------------------------------HKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred ----------------------------h--------------------------------hheecccceEEEEEECCCC
Confidence 0 0133444556667799999
Q ss_pred c-EEEEECCCeEEEEcCCC--CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE
Q 003217 432 M-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 432 ~-l~Sgs~DgtIrlWD~~g--~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (838)
+ |+++|.|.+++||+.++ +.-..+++|..+|+..++ ||++|++|+.|+++|+||++ ++.++.+.||.....+++
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 8 89999999999999965 455678899999997654 79999999999999999998 889999999998887776
Q ss_pred e
Q 003217 506 V 506 (838)
Q Consensus 506 ~ 506 (838)
.
T Consensus 308 l 308 (311)
T KOG0315|consen 308 L 308 (311)
T ss_pred e
Confidence 4
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.5e-26 Score=239.25 Aligned_cols=286 Identities=17% Similarity=0.289 Sum_probs=208.9
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE-ecCCC---EEEeeCCCc
Q 003217 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD---LWSGSEGGG 263 (838)
Q Consensus 188 ~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~---L~SgS~Dgt 263 (838)
.| ..+|.++... ++.|.||++||++|+||..+ +.+.+..||+++|.++++ .++.. ++|||.|.|
T Consensus 103 ~h-dDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LH-DDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cc-hhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 44 7788888776 69999999999999999987 678889999999997776 34443 899999999
Q ss_pred EEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCc
Q 003217 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR 342 (838)
Q Consensus 264 IrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg 342 (838)
+++|.++.++..+..... -++| ...|.++...+++.++.++++ .+|++|+..+.
T Consensus 171 l~Lw~~~~~~~~~~~~~~---------------~~GH----------k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKV---------------CRGH----------KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred EEEEEecCchhhhhHHhH---------------hccc----------ccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 999998664432211100 0122 345777888888999999995 68999994322
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
. ...++.. .. ..+ ...++++. .+.... .-++.+|..+|
T Consensus 226 ~-~~~~E~~----------s~-------~rr----k~~~~~~~--------------~~~r~P------~vtl~GHt~~V 263 (423)
T KOG0313|consen 226 E-EDELESS----------SN-------RRR----KKQKREKE--------------GGTRTP------LVTLEGHTEPV 263 (423)
T ss_pred c-ccccccc----------ch-------hhh----hhhhhhhc--------------ccccCc------eEEecccccce
Confidence 1 1111100 00 000 00000000 010001 11366899999
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC---Cc-cccccc
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE---GN-LLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~---g~-~i~~l~ 495 (838)
.+|.+++.+.++|+|-|.|||.||+ +|.++.++.+ ....+|++. ..++|++|+.|..|||||+. |. ..++|.
T Consensus 264 s~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 264 SSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred eeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 9999999888999999999999999 7888888876 557888865 45699999999999999986 33 478999
Q ss_pred ccccCEEEEEeC---CCEEEEEcCCCCeeeeecCCCC-CCchhhhhhhhccccccccccceeeEEEEEEeCCCCC
Q 003217 496 AHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTSPG-PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (838)
Q Consensus 496 gH~~~V~sla~d---g~~l~S~S~DgtIrlWdl~s~~-~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (838)
||.++|.++.+. ..+++|+|+|+++|+||+++.. |+.++.++ .-||+..+||-+....
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------------~DKvl~vdW~~~~~Iv 404 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------------NDKVLSVDWNEGGLIV 404 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------------CceEEEEeccCCceEE
Confidence 999999999864 4579999999999999999877 88877653 3369999999875433
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.5e-25 Score=228.50 Aligned_cols=264 Identities=19% Similarity=0.227 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|+++.|+|+|..++||+.|..|-+|++.+.. +....++||+++|..+.|.+|+. |+|+|.|++|+.||+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 8899999999999999999999999999987642 56677899999999999999998 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+++++..++..+...+.+ +.-..-+ ..|-+++ |+|++|||+++++++++
T Consensus 120 ~tG~~~rk~k~h~~~vNs-----------------------------~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNS-----------------------------LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ccceeeehhccccceeee-----------------------------cCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 998877665543333221 1111112 2455555 47999999999999888
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec----c--CccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA----K--GGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~----~--g~~~~~~~~ 421 (838)
+.-..+. + .++|.+.+.+++.|.-+....+|. . -.+.+|...
T Consensus 171 ~~~kyql-t-------------------------------Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 171 FENKYQL-T-------------------------------AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred cccceeE-E-------------------------------EEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 7433222 1 123333333444444444444443 1 124567778
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcCC----C-CeeeEeecCCc--cEEEE----EEcCCEEEEEeeCCeEEEEeCCC-
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDPN----G-NRLQDFQYLPF--AVQCL----CTFGSQIWVGYMNGIVQVLDLEG- 488 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~~----g-~~l~tl~~H~~--~V~sl----s~dG~~LasGs~DgtIrlWD~~g- 488 (838)
|..+..+++|. +++-+.|.++++||+. + +|++.+.+|.. .++.| +++++.+.+|+.|+.+.+||..+
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 88899999987 8999999999999983 3 67999998654 34433 46788999999999999999985
Q ss_pred cccccccccccCEEEEEeCC--CEEEEEcCCCCeee
Q 003217 489 NLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRG 522 (838)
Q Consensus 489 ~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrl 522 (838)
.++..|.||.+.|+++.+.+ ..|.|++.|++|.+
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 78999999999999999765 47899999999875
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.7e-25 Score=234.04 Aligned_cols=288 Identities=18% Similarity=0.239 Sum_probs=199.6
Q ss_pred ceeEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc---CCCCEEEE
Q 003217 133 CFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD---EASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s---~dg~~LaS 208 (838)
..+.++....+.+++| .|+.+|+||.+- ... +....| +++|.++++- +....++|
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~~G-k~~-------------------~~~~Gh-t~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDLKG-KSI-------------------KTIVGH-TGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEecCC-ceE-------------------EEEecC-CcceeeeEEEecCCccceEEE
Confidence 3444555556677765 599999999852 111 222334 7788866653 33356999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc-eeeecCCC-c---
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE-KALSLKPE-E--- 282 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~-~~~~~~~~-~--- 282 (838)
||.|.++++|..+.+. +..+....-+||.++|-+|...++|. +.|||.|.+|++|+.++.+ ..+.-... .
T Consensus 165 as~Dqtl~Lw~~~~~~----~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGE----NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred ecCCceEEEEEecCch----hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 9999999999998762 33333344469999999999999997 7899999999999943311 00100000 0
Q ss_pred -eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 283 -RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 283 -~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
.........-..+.+.+| ...|..+..++ ...+.+++ |.||+.||+.+|.+..++....
T Consensus 241 ~~~~~~~~~r~P~vtl~GH----------t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------- 301 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGH----------TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------- 301 (423)
T ss_pred hhhhhcccccCceEEeccc----------ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--------
Confidence 000000000113344444 55677777765 55677777 5799999999988755443211
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~D 439 (838)
...++..++... |++||.|
T Consensus 302 ------------------------------------------------------------sl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 302 ------------------------------------------------------------SLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ------------------------------------------------------------ceeEeecccccceeeecCCC
Confidence 112333444333 7899999
Q ss_pred CeEEEEcC-CC--C-eeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC-Cc-ccccccccccCEEEEEe-CCC
Q 003217 440 GLLLQWDP-NG--N-RLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-GN-LLGGWVAHSSPVIKMAV-GAG 509 (838)
Q Consensus 440 gtIrlWD~-~g--~-~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~-g~-~i~~l~gH~~~V~sla~-dg~ 509 (838)
..||+||+ ++ . ..++|.+|+++|.++... -.++++|+.|++++|||+. .+ .+..+.+|.+.|.++.+ .+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 99999999 43 3 568899999999999653 3489999999999999987 44 79999999999999997 677
Q ss_pred EEEEEcCCCCeeeee
Q 003217 510 YIFTLANHGGIRGWN 524 (838)
Q Consensus 510 ~l~S~S~DgtIrlWd 524 (838)
+++|||.|++||+..
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 999999999999976
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=253.91 Aligned_cols=238 Identities=21% Similarity=0.336 Sum_probs=197.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|+.|+++|+.+++++.|++|++|+..+.. . .....+.+|...|++++|+|||+ +++|+.|++|||||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~-----~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK-----S-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeeccccc-----c-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 5689999999999999999999999999996651 0 25566789999999999999997 799999999999999
Q ss_pred CCc-ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
... ....+ +++| ...+.++++.+.+..|.+|+ |.+|+|||+++++++++
T Consensus 233 ~~~~~~~~~-------------------l~gH----------~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 233 KDDGRNLKT-------------------LKGH----------STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cCCCeEEEE-------------------ecCC----------CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 332 22121 2334 56788999999888999988 57999999999998877
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
|.+|. ..|.+++|
T Consensus 284 l~~hs-------------------------------------------------------------------~~is~~~f 296 (456)
T KOG0266|consen 284 LKGHS-------------------------------------------------------------------DGISGLAF 296 (456)
T ss_pred eeccC-------------------------------------------------------------------CceEEEEE
Confidence 75443 23456788
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCC--eeeEeecCCcc--EEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFA--VQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~--~l~tl~~H~~~--V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
++||. |++++.|++|++||+ ++. |++++.++... ++++.+ +|++|++++.|+++++||+. +.+...+.+|.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 88887 788999999999999 777 67888887766 777754 78999999999999999998 78999999999
Q ss_pred cCEEEEE-----eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 499 SPVIKMA-----VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 499 ~~V~sla-----~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
..+.++. .++.+++|++.|+.|.+|++.+...
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred CcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 9766653 3788999999999999999877433
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.9e-24 Score=240.48 Aligned_cols=270 Identities=16% Similarity=0.274 Sum_probs=201.8
Q ss_pred eeEEEEe--cCCEEEEecC--CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 134 FLRTIVC--TEEQLWAGGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 134 ~~~~l~~--~~~~l~~g~d--~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.+.+++. +++.|..|.- +.+-||+...-. .-+++..| ...+.|++++|||++||||
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-------------------YVlKQQgH-~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-------------------YVLKQQGH-SDRITSLAYSPDGQLIATG 368 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccc-------------------eeeecccc-ccceeeEEECCCCcEEEec
Confidence 3445544 4666666553 589999986421 12445555 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.||+|||||...| -+..+|..|+..|+++.|+..|+ |+|.|-|||||.||+....+-.+++...
T Consensus 369 ~eDgKVKvWn~~Sg--------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~------ 434 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSG--------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE------ 434 (893)
T ss_pred cCCCcEEEEeccCc--------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC------
Confidence 99999999999988 57899999999999999999998 7899999999999996533222221100
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC--cEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL--SFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~--tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.....|++.++.|..|.+|+-. .|.+|+++||+++.+|.+|.
T Consensus 435 ----------------------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-------------- 478 (893)
T KOG0291|consen 435 ----------------------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-------------- 478 (893)
T ss_pred ----------------------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--------------
Confidence 1134678888888877776633 69999999999987766553
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlW 445 (838)
+.|..++|+|+|. |+|||-|+|||+|
T Consensus 479 -----------------------------------------------------gPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 479 -----------------------------------------------------GPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred -----------------------------------------------------CcceeeEEccccCeEEeccccceEEEE
Confidence 2344567888887 7999999999999
Q ss_pred cC-CC-CeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccc----------------cccc----ccccC
Q 003217 446 DP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLL----------------GGWV----AHSSP 500 (838)
Q Consensus 446 D~-~g-~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i----------------~~l~----gH~~~ 500 (838)
|+ .. ....++. +...|+.++ |||+.|++++.||.|.+||.+ +... ..++ +-...
T Consensus 506 ~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 99 43 3445554 566777775 579999999999999999964 2211 1111 22344
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++|. +||..+++||..+.|+++++..
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 55554 6999999999999999999754
No 31
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=255.66 Aligned_cols=235 Identities=21% Similarity=0.339 Sum_probs=193.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE-eccccccEEEEEEecCC-CEEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd 268 (838)
...+.|..+. .+.+.+|+.|.+|++|+..++ ..+.. +.||.+.|.+++|..-+ .|+|||.|.|+||||
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 5578999998 578999999999999999987 56666 99999999999998733 489999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
..++++...+..+ .+.+.++.. .+..+.+|+ |.+|++|++.++.++++
T Consensus 278 ~~sg~C~~~l~gh-----------------------------~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 278 CSTGECTHSLQGH-----------------------------TSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCcEEEEecCC-----------------------------CceEEEEEc--cCceEeeccCCceEEEEeccCcceEEE
Confidence 9888776554322 223444433 234445544 68999999999999888
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+.+|... |.++..
T Consensus 327 ~~~h~~~-------------------------------------------------------------------V~~v~~ 339 (537)
T KOG0274|consen 327 LRGHTGP-------------------------------------------------------------------VNCVQL 339 (537)
T ss_pred ecccccc-------------------------------------------------------------------EEEEEe
Confidence 7654321 223333
Q ss_pred cCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcC-CEEEEEeeCCeEEEEeCCC--cccccccccccCEEE
Q 003217 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIK 503 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~s 503 (838)
. ++.+++|+.|++|++||+ +++|++++++|+.+|+++.+++ .++++|+.|++|++||+++ +|+.++.+|.+.|.+
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 3 456899999999999999 8999999999999999999999 9999999999999999984 599999999999999
Q ss_pred EEeCCCEEEEEcCCCCeeeeecCCCCCCchh
Q 003217 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 504 la~dg~~l~S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
+...++.|+|++.|++||+||...+..+..+
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeee
Confidence 9999999999999999999998877665544
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.5e-23 Score=257.86 Aligned_cols=275 Identities=16% Similarity=0.144 Sum_probs=195.7
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaS 208 (838)
..+.+++.+ ++.+.+ |.|+.|+|||+........ ....|.....+ ...|.+++|++ ++.+|+|
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------~~~~~~~~~~~-~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------DIHYPVVELAS-RSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc------------ccccceEEecc-cCceeeEEeccCCCCEEEE
Confidence 346666665 334544 6699999999864211110 11112222122 56799999987 4789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|+.||+|++||+.++ +.+..+.+|.+.|++|+|+| ++. |+|||.|++|++||+.++.....+..
T Consensus 551 ~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------ 616 (793)
T PLN00181 551 SNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------ 616 (793)
T ss_pred EeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------
Confidence 999999999999986 66778899999999999997 676 78999999999999976432211100
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEE-cCCCCEEEEeC-CCcEEEEeccCccE-EEEEecCCceEEeeecccC
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL-LKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s-~~tI~lWD~~tg~~-l~~l~~~~~~~~~~~~s~~ 363 (838)
...+.++.+ .+++..+++++ +++|++||++++.. +.++.
T Consensus 617 ------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-------------- 658 (793)
T PLN00181 617 ------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-------------- 658 (793)
T ss_pred ------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec--------------
Confidence 123445555 34566777776 67899999976531 11111
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIr 443 (838)
.|...|.++.|.++..+++++.|++|+
T Consensus 659 -----------------------------------------------------~h~~~V~~v~f~~~~~lvs~s~D~~ik 685 (793)
T PLN00181 659 -----------------------------------------------------GHSKTVSYVRFVDSSTLVSSSTDNTLK 685 (793)
T ss_pred -----------------------------------------------------CCCCCEEEEEEeCCCEEEEEECCCEEE
Confidence 223345566676556689999999999
Q ss_pred EEcCC-------CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc-------------cccccccC
Q 003217 444 QWDPN-------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-------------GWVAHSSP 500 (838)
Q Consensus 444 lWD~~-------g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~-------------~l~gH~~~ 500 (838)
+||+. +++++++.+|...+.++++ +|.+|++|+.|++|++|+.. ...+. ....|...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99983 2578899999999888754 68899999999999999965 22211 12345667
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 501 VIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|.++++ ++..+++|+.||+|++|++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999885 6779999999999999985
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=234.88 Aligned_cols=265 Identities=22% Similarity=0.239 Sum_probs=209.5
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003217 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (838)
Q Consensus 139 ~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrv 217 (838)
+.++++|.+|+ .|.+-+|+........+ ..-| .++|.++.++++|.+++||+.||.||.
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFEti-------------------lQaH-Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFETI-------------------LQAH-DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHHHH-------------------hhhh-cccceeEEEccCCCEEEEcCCCceEEe
Confidence 35677888865 57999999854332222 1134 889999999999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccc-ccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
|+.+- ..+..+++|. .+|++|+|||+. +++|+|+||+|||||..-.+....
T Consensus 165 Wqpnm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------------------ 217 (464)
T KOG0284|consen 165 WQPNM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------------------ 217 (464)
T ss_pred cccch---------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe------------------
Confidence 99876 3456677765 999999999965 489999999999999754221111
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
|++| .-+|+++.-.+....|++++ |..|++||.++|.|+.++.+|
T Consensus 218 -L~GH----------gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H----------------------- 263 (464)
T KOG0284|consen 218 -LRGH----------GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH----------------------- 263 (464)
T ss_pred -eccC----------CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-----------------------
Confidence 2334 44788888888888999988 568999999999997665433
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
...|.++.|++++. |+++|.|.+++++|+ .-+.+
T Consensus 264 --------------------------------------------KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 264 --------------------------------------------KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred --------------------------------------------cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 23455677888877 899999999999999 57889
Q ss_pred eEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Cccc-ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 453 QDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLL-GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 453 ~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i-~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
+++.+|...|+++.. ....+.+|+.||.|..|.+. .+.+ ..=.+|...|++++. -|..|+|||.|.++|.|.-
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999999999999954 35699999999999999987 4444 444699999999996 4778999999999999985
Q ss_pred CCC
Q 003217 526 TSP 528 (838)
Q Consensus 526 ~s~ 528 (838)
..|
T Consensus 380 ~rp 382 (464)
T KOG0284|consen 380 NRP 382 (464)
T ss_pred CCC
Confidence 443
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3e-23 Score=232.21 Aligned_cols=369 Identities=15% Similarity=0.181 Sum_probs=251.0
Q ss_pred eeEEEEecCC-E-EEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCTEE-Q-LWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~~~-~-l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.++....+ . |..| .||.||+|++.... .+++..+| ..+|+|+.||..|..|+|||
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------------------~~~tfngH-K~AVt~l~fd~~G~rlaSGs 126 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEE-------------------ILITFNGH-KAAVTTLKFDKIGTRLASGS 126 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCc-------------------eeeeeccc-ccceEEEEEcccCceEeecC
Confidence 3444544444 3 3444 69999999986421 12344556 88999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCC--cee---
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE--ERH--- 284 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~--~~~--- 284 (838)
.|+.|.+||+-.. .-...+.||...|+.+.|..+.+ |+|.|.|+.||+||+++..+--++-.+ +.+
T Consensus 127 kDt~IIvwDlV~E--------~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 127 KDTDIIVWDLVGE--------EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred CCccEEEEEeccc--------eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 9999999999875 45678999999999999998555 789999999999999874432111000 000
Q ss_pred ------------------------------------------------eeEEEEe---e---------------------
Q 003217 285 ------------------------------------------------TAALIVE---R--------------------- 292 (838)
Q Consensus 285 ------------------------------------------------~~~~~~~---~--------------------- 292 (838)
...+..+ |
T Consensus 199 ~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 199 LDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred EecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 0000000 0
Q ss_pred ---------------------------c------------------eeec--ccce-------eccceee----------
Q 003217 293 ---------------------------S------------------YIDL--RSHL-------SVNGFSS---------- 308 (838)
Q Consensus 293 ---------------------------s------------------~~~l--~~~~-------~~~~~~~---------- 308 (838)
+ .+++ .++. ..+.++.
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 0 0000 0000 0000000
Q ss_pred ------------eecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCccccc--ccceee
Q 003217 309 ------------ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM--EDEFKT 374 (838)
Q Consensus 309 ------------~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~--~~~~~~ 374 (838)
-+.++|+.++++.+...++|++.+.|++|+..|.+|++++...-.. .+ .+-+.....+ ...-++
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l-~~-~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYIL-AS-KFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEE-EE-EecCCCceEEEeccCCce
Confidence 0124688888888888888888889999999999999988643111 11 1111000000 000000
Q ss_pred EEE---e------cCCCCcceeeeeEeecCcceeeecCCcEEEEec-----c--Ccc-----------ccCCCceEEEEE
Q 003217 375 KIV---T------SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----K--GGF-----------GDDNRRTEALTT 427 (838)
Q Consensus 375 ~~~---s------~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~--g~~-----------~~~~~~v~ala~ 427 (838)
.++ + ...++.+..++...+++...++|++|.+.+.|. . |+- .+-...|.++.+
T Consensus 437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred EEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 000 0 012355566777777777788888888777775 1 111 112346788999
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEE
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI 502 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~ 502 (838)
||||+ |+.+=-|+||+++-+ +-+..-.+-||.-||.|+ ++|++.|++||.|.+|++|-+. |.|-+++-+|.+.|.
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 99999 566668999999999 557777888999999997 7899999999999999999999 999999999999999
Q ss_pred EEEe--CCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 503 KMAV--GAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 503 sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
+|.+ ....++|+|.|+.||-||-..+..+.
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 9986 44568899999999999966655443
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.4e-24 Score=221.36 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=206.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
+.|.+|++||..++.... .+++ | +.+|..++|+..|++|+|.|.|-.|++||.++-
T Consensus 127 s~d~tikv~D~~tg~~e~-----------------~LrG--H-t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---- 182 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELER-----------------SLRG--H-TDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---- 182 (406)
T ss_pred cCCceEEEEEccchhhhh-----------------hhhc--c-ccceeEEEEecCccEEEecCCccchhheeHHHH----
Confidence 468999999998765432 1222 2 678999999999999999999999999999874
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccce
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 306 (838)
++++..+.||.-.|.+++|-|.|. ++|+|.|.+||.|+++++.+..++.++.
T Consensus 183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~------------------------ 235 (406)
T KOG0295|consen 183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS------------------------ 235 (406)
T ss_pred ---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch------------------------
Confidence 367788899999999999999997 8999999999999999987666555432
Q ss_pred eeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcc
Q 003217 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (838)
Q Consensus 307 ~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (838)
.-++.+....+|..+++++ +.++++|-+.+++|...|..|..++..+.+.+....+- +. ...+. .+
T Consensus 236 -----ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~---i~--~at~~-~~-- 302 (406)
T KOG0295|consen 236 -----EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS---IS--EATGS-TN-- 302 (406)
T ss_pred -----HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc---hh--hccCC-CC--
Confidence 2355666666677777776 68999999999999888888877554444433221110 00 00000 00
Q ss_pred eeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec
Q 003217 386 QSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (838)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~ 457 (838)
.+.....++.|.++++|. .| ++.+|...|..++|+|.|+ |+|+.+|+++++||+ +++|.+++..
T Consensus 303 --------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 303 --------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred --------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 112345677788877776 23 4668999999999999998 899999999999999 7899999999
Q ss_pred CCccEEEEEEc--CCEEEEEeeCCeEEEEe
Q 003217 458 LPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 458 H~~~V~sls~d--G~~LasGs~DgtIrlWD 485 (838)
|..-|+++.++ -.++++|+-|.++++|.
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999875 34999999999999996
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.4e-22 Score=227.17 Aligned_cols=359 Identities=16% Similarity=0.226 Sum_probs=250.8
Q ss_pred EEEecCC--EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeee---cCCCCeEEEEEcCCCCEEEEEeC
Q 003217 137 TIVCTEE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESV---KGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 137 ~l~~~~~--~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+|..+.+ .+.++-.+-+.||-...... +.-.||..+. .+...|.|+.|+.|.++|++||+
T Consensus 101 ~i~fSPng~~fav~~gn~lqiw~~P~~~~---------------~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr 165 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGCGNLLQIWHAPGEIK---------------NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR 165 (893)
T ss_pred eEEECCCCcEEEEEecceeEEEecCcchh---------------cccCcceEeeeecCCccceeEEEeccCCceEEeccc
Confidence 4444433 45557788999997633111 1345664321 12668999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeec------------
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL------------ 278 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~------------ 278 (838)
|-++|+|.++... + -....+.||+++|-+..|..|.. |+|-|.||.+.+|..........-
T Consensus 166 D~s~rl~~v~~~k----~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~ 239 (893)
T KOG0291|consen 166 DLSARLFGVDGNK----N--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE 239 (893)
T ss_pred cceEEEEEecccc----c--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence 9999999998741 1 12456889999999999999886 999999999999987631110000
Q ss_pred ---CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCce
Q 003217 279 ---KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQI 354 (838)
Q Consensus 279 ---~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~ 354 (838)
..++ .+... .+...+-| .+.-.+.++++.++......++++-. +.+.|+.+-.-.+++.+....+.
T Consensus 240 ~~~~~Ee-k~~~~----~~~k~~k~-----~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~ 309 (893)
T KOG0291|consen 240 MDEDGEE-KTHKI----FWYKTKKH-----YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK 309 (893)
T ss_pred ccccchh-hhcce----EEEEEEee-----eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce
Confidence 0000 00000 00000001 01111356777777666666666643 55679999999999988876555
Q ss_pred EEeeecccCcccccccc-----eeeEEEec-------CCCCcceeeeeEeecCcceeeecCCcEEEEecc------Cccc
Q 003217 355 ENRVDMSLLPDFAMEDE-----FKTKIVTS-------SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFG 416 (838)
Q Consensus 355 ~~~~~~s~~~~~~~~~~-----~~~~~~s~-------~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~ 416 (838)
+..+.+...++...-.. ..+|-|.. ..+-....++..++++..+.+|..|+-.++|.. .+|.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 45555544333322111 11232322 112334457888888889999999998888862 3688
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEE--EEEEc--CCEEEEEeeCC-eEEEEeCC-C
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTF--GSQIWVGYMNG-IVQVLDLE-G 488 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~d--G~~LasGs~Dg-tIrlWD~~-g 488 (838)
+|+..|.++.|+..|+ +++.|-|||||.||+ .+++.++|+. ..++. ||+.| |..+.+|+.|. .|.||+++ |
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 9999999999999998 789999999999999 7899999986 33444 77776 88888888775 79999987 8
Q ss_pred cccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 489 NLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 489 ~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+++..+.||.++|.+++ ++++.|+|+|+|+|||+||+-.
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 99999999999999876 5889999999999999999744
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=6.9e-23 Score=215.08 Aligned_cols=266 Identities=21% Similarity=0.334 Sum_probs=203.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++++|++++|++|+.||.|++|++.++ +....+.+|...|.++.|+++++ |++++.|+.|++|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 779999999999999999999999999999886 45667889999999999999996 889999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+.+....+.. + ...+.++...+.+..+++++ ++.+++||+.+++.+..+
T Consensus 81 ~~~~~~~~~~~-------------------~----------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 81 ETGECVRTLTG-------------------H----------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CcccceEEEec-------------------c----------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 76422211110 1 22466677776667777777 789999999988887777
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-c-----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~~~~~~v 422 (838)
..+......+.+. +.+..++.+..++..+++. . ..+..+...+
T Consensus 132 ~~~~~~i~~~~~~-------------------------------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 132 RGHTDWVNSVAFS-------------------------------PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred ccCCCcEEEEEEc-------------------------------CcCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 6443322222222 2222223333233333332 1 1233455678
Q ss_pred EEEEEcCCC-cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-Cccccccccc
Q 003217 423 EALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 423 ~ala~S~dg-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (838)
.++.+++++ .+++++.|+.|++||. .++.+..+..|...|.++.++ +..+++++.|+.|++||+. ++.+..+.+|
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 899999998 5888888999999999 588888888999999998764 5688887779999999987 7788888899
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 498 SSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
...|.++.+ +++++++++.|+.|++|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999986 458999999999999996
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=207.60 Aligned_cols=266 Identities=16% Similarity=0.203 Sum_probs=198.4
Q ss_pred EEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 145 LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 145 l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
|++ |+|..||+|+........| ...+.+ .| ...|.++|++|.|++|++||.|.++-+|.-..+
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~c--------------k~vld~-~h-krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTC--------------KTVLDD-GH-KRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEE--------------EEeccc-cc-hheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 444 6799999999864322222 000001 23 779999999999999999999999999987764
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccccee
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 302 (838)
.|++..++.||.+.|.+++||++|. |+|+|.|+.|-||.++.... + .+ .++ |..|
T Consensus 94 ------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-f------ec-~aV--------L~~H-- 149 (312)
T KOG0645|consen 94 ------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-F------EC-IAV--------LQEH-- 149 (312)
T ss_pred ------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-E------EE-Eee--------eccc--
Confidence 5788999999999999999999998 89999999999999863211 1 01 111 1223
Q ss_pred ccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCC
Q 003217 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (838)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (838)
+.+|+.+...|....+++++ |+||++|+-..+ ..++.
T Consensus 150 --------tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---------ddW~c------------------------- 187 (312)
T KOG0645|consen 150 --------TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---------DDWEC------------------------- 187 (312)
T ss_pred --------cccccEEEEcCCcceeEEeccCCeEEEEeecCC---------CCeeE-------------------------
Confidence 66899999999889999999 579999974311 11100
Q ss_pred CCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCCCCeeeEee-cCC
Q 003217 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQ-YLP 459 (838)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~g~~l~tl~-~H~ 459 (838)
..++.+|...|.+++|++.| +|++++.|++|+||-.- ..+. .|+
T Consensus 188 ------------------------------~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~~~~~~~s 233 (312)
T KOG0645|consen 188 ------------------------------VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----TDLSGMHS 233 (312)
T ss_pred ------------------------------EEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----cCcchhcc
Confidence 00133455567889999988 59999999999999752 1111 377
Q ss_pred ccEEEEEEcCCEEEEEeeCCeEEEEeCCC-------cc-cccccccccCEEEEEeCC---CEEEEEcCCCCeeeeecC
Q 003217 460 FAVQCLCTFGSQIWVGYMNGIVQVLDLEG-------NL-LGGWVAHSSPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 460 ~~V~sls~dG~~LasGs~DgtIrlWD~~g-------~~-i~~l~gH~~~V~sla~dg---~~l~S~S~DgtIrlWdl~ 526 (838)
.+++.++.....|++|+.|+.|+|+--.. ++ ...-.+|...|++|.+++ +.|+|+|.||.|++|.+.
T Consensus 234 r~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 88888888867999999999999997431 22 335678999999999654 589999999999999864
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.7e-24 Score=239.75 Aligned_cols=298 Identities=13% Similarity=0.205 Sum_probs=237.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
++-|..++|.|.--+|.++-..|.|++||-.-+ .++..|..|.++|.+|+|.|.+- ++||++|-.||||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhh--------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 446888999999999999999999999998765 56778999999999999999988 579999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
.+..+.+++.++ -..|+.+.+.+.-..|.|++| +||+||+-.+++|+.++
T Consensus 81 k~rrclftL~GH-----------------------------lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 81 KTRRCLFTLLGH-----------------------------LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ccceehhhhccc-----------------------------cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 776665555432 234677788887778888885 79999999999999999
Q ss_pred ecCCceEEeeeccc----CcccccccceeeEEEecCCCCcceeeeeEee--cCcc---eeeecCCcEEEEeccCccccCC
Q 003217 349 NIDGQIENRVDMSL----LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRN---AIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 349 ~~~~~~~~~~~~s~----~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~---~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
++|.+.+....+.+ ..+.+.|+++|+|..++.++...... ++.+ .+.+ -+.|..|.|... .+.+|.
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~----VLEGHD 206 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKH----VLEGHD 206 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcCeeeee----eecccc
Confidence 99999877777776 34566788999998888754332111 1111 1111 134555655433 367899
Q ss_pred CceEEEEEcCC-CcEEEEECCCeEEEEcC-CCC--eeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCC-Ccccc
Q 003217 420 RRTEALTTSID-GMIWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 420 ~~v~ala~S~d-g~l~Sgs~DgtIrlWD~-~g~--~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~ 492 (838)
..|...+|.|- ..++||++|..||+|.. +.+ .+.+..||.+.|.|+-+++ ..|.|.++|++|||||++ .+.++
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 99999999885 45899999999999998 343 4677889999999998887 699999999999999998 67899
Q ss_pred cccccccCEEEEEeCCCE-EEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSSPVIKMAVGAGY-IFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~~V~sla~dg~~-l~S~S~DgtIrlWdl~s~~~ 530 (838)
+++--.+.-|.|+.++.. |+.+++|+++.++.+..-.|
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 998888899999988764 77899999999999875444
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.6e-24 Score=224.23 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=193.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+..|+-+.||++|++|||||+|.+..+|++... ..++...++.||..+|.-|.||||.+ |++|+.|..+++||+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 889999999999999999999999999998763 34677888999999999999999997 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++.....+... + ...+.+.+--+++..+.+|+ |++|..||+.- +.+...
T Consensus 299 ~tgd~~~~y~~~------------------~----------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W 349 (519)
T KOG0293|consen 299 DTGDLRHLYPSG------------------L----------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNW 349 (519)
T ss_pred CcchhhhhcccC------------------c----------CCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcc
Confidence 887643322110 0 01233344455666666666 68999999863 333332
Q ss_pred ecCC-ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEec----cCccccCCCce
Q 003217 349 NIDG-QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA----KGGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~----~g~~~~~~~~v 422 (838)
++-. +-+..++++. ++..+++-..+. ++.+.. .-.+......+
T Consensus 350 ~gvr~~~v~dlait~-------------------------------Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITY-------------------------------DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred cccccceeEEEEEcC-------------------------------CCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 2110 0001111111 111111111111 111111 11133455778
Q ss_pred EEEEEcCCCcEE-EEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EE---cCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 423 EALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CT---FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 423 ~ala~S~dg~l~-Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~---dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
.++.+|.||+++ +.=.+..|.+||+ +.+.++.+.||...-.-+ ++ +.++|+|||+|+.|+||+.. |+++.++
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 899999999964 4457889999999 567788899988653333 23 34699999999999999986 8999999
Q ss_pred cccccCEEEEEe---CCCEEEEEcCCCCeeeeecCC
Q 003217 495 VAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s 527 (838)
.||+..|++|++ ++.+++|||.|||||+|....
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999996 566899999999999998643
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=233.67 Aligned_cols=279 Identities=16% Similarity=0.226 Sum_probs=213.5
Q ss_pred eeEEEEecCCEEE--EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVCTEEQLW--AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~~~~~l~--~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
-+|++....+.+. ++..+.|++||..+..+... +. .+-+.|..|-|.+++|++|.+
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT---------------------i~-~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT---------------------IT-CGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEE---------------------ec-cccEEEEEecCCCceEEEecc
Confidence 4777877655333 35678999999988665431 22 567899999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
.|.+.++|+... ..+-+.++|.++|++|+.+||++ ++|||.|.|||.||..-. .. .+.... ..+.+
T Consensus 433 ~Gel~vfdlaS~--------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~---~~-~~gt~~-k~lsl 499 (888)
T KOG0306|consen 433 NGELQVFDLASA--------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV---VS-VPGTQK-KVLSL 499 (888)
T ss_pred CCceEEEEeehh--------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE---ec-cCcccc-eeeee
Confidence 999999999986 45556789999999999999998 999999999999997321 01 000000 00000
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
. |.... --..++.|+..+|++..++.+- +.|++++-+.|-++--.
T Consensus 500 ~--------~~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls---------------------- 545 (888)
T KOG0306|consen 500 K--------HTRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS---------------------- 545 (888)
T ss_pred c--------cceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee----------------------
Confidence 0 00000 0156789999999887776554 67787776654332111
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~- 447 (838)
+-+|.-+|.++-+|||+. +++||.|.+||+|-+
T Consensus 546 ---------------------------------------------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 546 ---------------------------------------------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred ---------------------------------------------ecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 234555677888999998 689999999999999
Q ss_pred CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeee
Q 003217 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrl 522 (838)
=|.|-+.|-+|.+.|+++-+ ....+++++.|+.|+-||.+ -.+++++.+|...|++++ ++|.+++|+|+|.+||+
T Consensus 581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 49999999999999999965 34589999999999999987 578999999999999987 58899999999999999
Q ss_pred eecC
Q 003217 523 WNVT 526 (838)
Q Consensus 523 Wdl~ 526 (838)
|.-.
T Consensus 661 wE~t 664 (888)
T KOG0306|consen 661 WERT 664 (888)
T ss_pred eecc
Confidence 9843
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=4.2e-23 Score=215.44 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=189.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+.+|+|++.+|+.++++||+.|...-+|+..++ .....+.||+..|+++.||.||. |+||..+|.|+||..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 889999999999999999999999999999998 56788999999999999999998 689999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++.....+..+ -.++..+.-.+....++.|+ |+.+-.|.+.++...+++
T Consensus 136 stg~~~~~~~~e-----------------------------~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 136 STGGEQWKLDQE-----------------------------VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred ccCceEEEeecc-----------------------------cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 886655444211 11122222222222222222 223334444443333444
Q ss_pred ecCCceEEeeecccCccccc----ccceeeEEEecCCCCc--------ceeeeeEeecCcceeeecCCcEEEEec-----
Q 003217 349 NIDGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDK--------AQSSFGFFQRSRNAIMGAADAVRRVAA----- 411 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~g~~~~v~~v~~----- 411 (838)
.+|.+..+...+.+...... +..+++|..+...... ....+.+...+..++.|..++...+-.
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 44433333223332222111 1111111111000000 000111111122223333333222211
Q ss_pred -----cCc----cccC---CCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEEcC-CEEEEEee
Q 003217 412 -----KGG----FGDD---NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFG-SQIWVGYM 477 (838)
Q Consensus 412 -----~g~----~~~~---~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG-~~LasGs~ 477 (838)
.++ ...+ ...|.++.++..=. .+.|+-||+|-|||.....++..-.|...|..+.+.+ .+|++++.
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~ 346 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA 346 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeecc
Confidence 100 0112 22344444444323 4789999999999997666667778999999998877 69999999
Q ss_pred CCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
+|.|++||.. |++..++.||+..|..++ ++.+.++|+|.|++.+++++.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999986 999999999999999987 688899999999999999863
No 43
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=4.2e-23 Score=209.98 Aligned_cols=239 Identities=19% Similarity=0.269 Sum_probs=184.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|+|+-|++|.++|+|+|.||.+.|||.-+. .....+.-...+|..+||+|.|+ ++.|+-|+..-|+++
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 779999999999999999999999999998886 33444445578999999999999 578999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+........ +++ .+.+| .+.+.+.-+-+++..|-+++|.|..+||+++|+.+..|.
T Consensus 127 s~~d~~g~~~----------v~r---~l~gH----------tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 127 STRDAEGNVR----------VSR---ELAGH----------TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred ccccccccce----------eee---eecCc----------cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence 6532111000 000 12223 334555556555555555568899999999999887776
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
+|.. .|.+|.++|
T Consensus 184 GH~g-------------------------------------------------------------------DV~slsl~p 196 (343)
T KOG0286|consen 184 GHTG-------------------------------------------------------------------DVMSLSLSP 196 (343)
T ss_pred CCcc-------------------------------------------------------------------cEEEEecCC
Confidence 5432 234555666
Q ss_pred -CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc--cccCE
Q 003217 430 -DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HSSPV 501 (838)
Q Consensus 430 -dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g--H~~~V 501 (838)
+++ .+||+.|++.+|||+ .+.|.|+|.+|...|++|.+ +|.-+++|+.|++.|+||+. .+.+..+.. -...|
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 555 789999999999999 89999999999999999864 78999999999999999997 555666542 23468
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 502 IKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+++++ .|++|+.|..|.++.+||.-.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc
Confidence 88886 799999999999999999543
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-23 Score=229.94 Aligned_cols=277 Identities=17% Similarity=0.210 Sum_probs=202.2
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC
Q 003217 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (838)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 190 (838)
+++|..++.+ ||- +--+.+ =..|.|.|||.++..-... | .+.
T Consensus 12 rSdRVKsVd~--HPt---------------ePw~la~LynG~V~IWnyetqtmVks-----------------f--eV~- 54 (794)
T KOG0276|consen 12 RSDRVKSVDF--HPT---------------EPWILAALYNGDVQIWNYETQTMVKS-----------------F--EVS- 54 (794)
T ss_pred cCCceeeeec--CCC---------------CceEEEeeecCeeEEEecccceeeee-----------------e--eec-
Confidence 6778888877 541 111222 2367999999976443321 1 123
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.-||.+..|-+.-.++++||.|..|||++.+++ +.+.+|.+|.+.|.+|+..|.-- ++|+|+|-+||+||+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccc--------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 558888888888899999999999999999997 78899999999999999999764 789999999999999
Q ss_pred CCc-ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEE
Q 003217 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
+.. .+..++.+ | +..|..+++.|. ..+.+|++ |+||++|.+-+..+..
T Consensus 127 e~~wa~~qtfeG-------------------H----------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 127 ENEWACEQTFEG-------------------H----------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred cCceeeeeEEcC-------------------c----------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 762 22222322 2 234667777664 45777777 7899999987655544
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+|.+|. +.|.++.
T Consensus 178 Tl~gHe-------------------------------------------------------------------kGVN~Vd 190 (794)
T KOG0276|consen 178 TLEGHE-------------------------------------------------------------------KGVNCVD 190 (794)
T ss_pred eeeccc-------------------------------------------------------------------cCcceEE
Confidence 444332 2223333
Q ss_pred EcCCC---cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCC--EEEEEeeCCeEEEEeCCC-ccccccccccc
Q 003217 427 TSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (838)
Q Consensus 427 ~S~dg---~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (838)
+=+.| .|+||++|.+||+||- +..|++++.||.+.|.++++... .|++|++|||+|||+..+ ++..++.---+
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 33333 6999999999999999 77999999999999999988764 999999999999999764 56677777778
Q ss_pred CEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 500 PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 500 ~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.||+|+ .++..++.|...|.| .-.+....|
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP 302 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEP 302 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcE-EEEccCCCC
Confidence 999998 344556666555554 334444333
No 45
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.4e-24 Score=235.94 Aligned_cols=246 Identities=21% Similarity=0.332 Sum_probs=187.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 196 ~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
.+..|. .+++|+||+.||.||+|+...... ......+.+++.|..+|+.+++..+|+ |+|+|.|.|||+|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 455554 456699999999999999876420 001123677899999999999999996 9999999999999985432
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE-cCCCCEEEEeC-CCcEEEEeccCccE--EEEEe
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL--LKVFN 349 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s-~~tI~lWD~~tg~~--l~~l~ 349 (838)
.+.. . .++.| ...|+|++. ......|++|+ |+.|.|||+.+|.. +..+.
T Consensus 107 -~~c~-------s---------tir~H----------~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 107 -TFCM-------S---------TIRTH----------KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred -chhH-------h---------hhhcc----------cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 1111 0 12223 567889988 56667888888 68899999998732 22111
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
++ . .... . .++...|.+++..+
T Consensus 160 ---~~---------t------------~~sl------------------~----------------sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 160 ---NV---------T------------VNSL------------------G----------------SGPKDSIYSLAMNQ 181 (735)
T ss_pred ---cc---------c------------cccC------------------C----------------CCCccceeeeecCC
Confidence 00 0 0000 0 03344566788888
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEE
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sl 504 (838)
.|. +++|+..+.+++||. +++.+..+.||+.-|.+|- .||+++++||+||+|||||+. .+|+.++..|.+.||++
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 887 688999999999999 7888999999999999985 479999999999999999998 67999999999999999
Q ss_pred EeC--CCEEEEEcCCCCeeeeecCCC
Q 003217 505 AVG--AGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 505 a~d--g~~l~S~S~DgtIrlWdl~s~ 528 (838)
..+ =+.+++|+.|+.|..=|+++|
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCc
Confidence 854 457999999999999898886
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=5.7e-24 Score=224.35 Aligned_cols=237 Identities=21% Similarity=0.306 Sum_probs=189.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|..|.+.|+|+.|.+|++-|.+.+|+..+- .-...+++|..+|++|.++++|. ++||+.||.||+|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee--------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 347899999999999999999999999997542 22334689999999999999998 899999999999997
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
.-.- .... .+| ....|+++++++.+.+.+++++ ++|+|||..-.+.-.+|
T Consensus 168 nmnn-Vk~~-------------------~ah---------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 168 NMNN-VKII-------------------QAH---------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred chhh-hHHh-------------------hHh---------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 4210 0000 011 1356899999998889998885 78999998765544444
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+|+ ..|.++.+.
T Consensus 219 ~GHg-------------------------------------------------------------------wdVksvdWH 231 (464)
T KOG0284|consen 219 RGHG-------------------------------------------------------------------WDVKSVDWH 231 (464)
T ss_pred ccCC-------------------------------------------------------------------CCcceeccC
Confidence 4443 223344444
Q ss_pred CC-CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 429 ID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 429 ~d-g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
|. |.|+|||.|+.||+||. +|+|+-++.+|.+.|+.+.+ +|.+|+++|.|..++++|.. -+-+.+++||...|++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 43 45899999999999999 89999999999999999876 57899999999999999998 4678999999999999
Q ss_pred EEe---CCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 504 MAV---GAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 504 la~---dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
+.+ ..+.+.||+.||.|..|.+..-.|+
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccc
Confidence 985 4578889999999999998744443
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=6e-22 Score=243.77 Aligned_cols=242 Identities=16% Similarity=0.177 Sum_probs=181.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd 268 (838)
.+.|.+++|+|+|++|+||+.|++|++|+.................+.+ ...|.+++|++. +. |+||+.||+|+|||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 7789999999999999999999999999986421000000012233333 468999999885 44 89999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
+.++.....+. +| ...|.++++.+ ++..+++++ |++|++||+++++++.
T Consensus 562 ~~~~~~~~~~~-------------------~H----------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 562 VARSQLVTEMK-------------------EH----------EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCCCeEEEEec-------------------CC----------CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 97643322211 12 44677888875 566788777 6799999999887765
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
++..+. .+.++.
T Consensus 613 ~~~~~~--------------------------------------------------------------------~v~~v~ 624 (793)
T PLN00181 613 TIKTKA--------------------------------------------------------------------NICCVQ 624 (793)
T ss_pred EEecCC--------------------------------------------------------------------CeEEEE
Confidence 543211 122344
Q ss_pred E-cCCCc-EEEEECCCeEEEEcC-CCC-eeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-------Ccccccc
Q 003217 427 T-SIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-------GNLLGGW 494 (838)
Q Consensus 427 ~-S~dg~-l~Sgs~DgtIrlWD~-~g~-~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-------g~~i~~l 494 (838)
+ +++|. +++|+.|++|++||+ +++ .+.++.+|...|.++.+ ++.+|++|+.|++|+|||+. .+++.++
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 4 34455 889999999999999 554 57788899999999976 68899999999999999975 2568899
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.+|...|..+. ++++++++|+.|++|++|+...+.+
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 99999988876 4688999999999999999765543
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=2.2e-22 Score=209.00 Aligned_cols=266 Identities=16% Similarity=0.315 Sum_probs=192.6
Q ss_pred ceeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+|+++.+.. +.++ +.|.+++|||++++..... +. +| ...|..|++|+.--+|+|+
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-----------------lt--Gh-i~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-----------------LT--GH-IETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-----------------ec--ch-hheeeeeeecccCceEEEe
Confidence 46889988744 6655 4599999999987643211 11 22 6689999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.|+.|+.||++.. +-++..-||-..|.+++..|.-+ |+||+.|.++||||+.+......+
T Consensus 212 gedk~VKCwDLe~n--------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---------- 273 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYN--------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---------- 273 (460)
T ss_pred cCCCeeEEEechhh--------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe----------
Confidence 99999999999986 66788899999999999999765 899999999999999775433222
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
.+| .+.|..+.+.+.+..|.+++ |.+|++||++.|+-..++..|...+..+.+.+...
T Consensus 274 ---------~GH----------~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-- 332 (460)
T KOG0285|consen 274 ---------SGH----------TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-- 332 (460)
T ss_pred ---------cCC----------CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh--
Confidence 223 34566666666667777777 78999999999999888877765443333332110
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-c----CccccCCCceEEEEEcCCCcEEEEECCCeE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K----GGFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~----g~~~~~~~~v~ala~S~dg~l~Sgs~DgtI 442 (838)
....++.+.+..+.. . ..+.+|...+.+++...||.+++|+++|++
T Consensus 333 -----------------------------~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 333 -----------------------------LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred -----------------------------hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence 011122222222211 1 124567778899999999999999999999
Q ss_pred EEEcC-CCCeeeEe---ec-----CCccEEEEEEc--CCEEEEEeeCCeEEEEeC
Q 003217 443 LQWDP-NGNRLQDF---QY-----LPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 443 rlWD~-~g~~l~tl---~~-----H~~~V~sls~d--G~~LasGs~DgtIrlWD~ 486 (838)
..||- +|-..|.+ .+ ....|.+-++| |.+|++|..|.+|++|.-
T Consensus 384 ~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred EEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 99999 67444433 22 12346666665 779999999999999963
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=6.7e-24 Score=228.26 Aligned_cols=266 Identities=17% Similarity=0.205 Sum_probs=204.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
+-.|.|+.|.| .+.+|.||+.|++|+||++-... +++++++||+.+|.+++|+++|. ++|+|.|++||+||
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCc-------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 78899999999 89999999999999999987632 77899999999999999999997 89999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++++.+..+++... -..|+-+.+++ ..+.+|+ ++.|+.||++++++++
T Consensus 287 tETG~~~~~f~~~~------------------------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 287 TETGQVLSRFHLDK------------------------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred cccceEEEEEecCC------------------------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 99987766553211 12344455555 3444444 6789999999999765
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc-----cc--cCC
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FG--DDN 419 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~-----~~--~~~ 419 (838)
.+..|-+ .+.++.|.+.++.-++.+.+..+++|.-+. +. .+.
T Consensus 337 eYd~hLg-------------------------------~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 337 EYDRHLG-------------------------------AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred HHHhhhh-------------------------------heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 4432221 122355666666666666777777775211 11 133
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcCC----CCeeeEeecCCccEEE----EEEcCCEEEEEeeCCeEEEEeCC-Cc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GN 489 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~----g~~l~tl~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~ 489 (838)
....++...|.+. ++.-+.|+.|.++.+. -+.-+.|+||..+=++ +++||++|++|+.||.+.+||-+ .+
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 4566788888877 6777789999999873 2455778888754333 36799999999999999999987 68
Q ss_pred ccccccccccCEEEEEeC---CCEEEEEcCCCCeeeee
Q 003217 490 LLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrlWd 524 (838)
++..|++|+.++..+.++ .+.++|+|.||.|++|+
T Consensus 466 l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999875 45799999999999996
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=3.1e-21 Score=209.20 Aligned_cols=273 Identities=17% Similarity=0.220 Sum_probs=185.0
Q ss_pred CCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecccee
Q 003217 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (838)
Q Consensus 229 ~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 307 (838)
.+|+-..+++.|..-|+++.|+|||. ++|++.||+|-++|=.++++...+.... +|
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~----------------aH------- 234 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD----------------AH------- 234 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC----------------Cc-------
Confidence 45666777889999999999999998 6899999999999987777655443211 12
Q ss_pred eeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec-----------ccCccccc----ccc
Q 003217 308 SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM-----------SLLPDFAM----EDE 371 (838)
Q Consensus 308 ~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~-----------s~~~~~~~----~~~ 371 (838)
.+.+..+.-+|++.++++++ |.+++|||+.++++++++....+++...-. +......+ +.+
T Consensus 235 ---kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 ---KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ---cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 45577777788888888877 789999999999999998765443221100 00000000 001
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC--------------------------------------
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-------------------------------------- 413 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g-------------------------------------- 413 (838)
-.+++++ +.|.++.++.++++..++.|+.+|...-|..+
T Consensus 312 -~~~~i~G--HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 312 -VLKVISG--HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred -hhheecc--cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 0111122 23344444444443334444443333222100
Q ss_pred ------c----------------------------------ccc---------CCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 414 ------G----------------------------------FGD---------DNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 414 ------~----------------------------------~~~---------~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
. +.. -.....+++++|++. ++.|+.|+.|.
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 0 000 011345688999988 78999999999
Q ss_pred EEcCCC-Ce--eeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCCCc-c-cccccccccCEEEEEe--CCCEEEEE
Q 003217 444 QWDPNG-NR--LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-L-LGGWVAHSSPVIKMAV--GAGYIFTL 514 (838)
Q Consensus 444 lWD~~g-~~--l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g~-~-i~~l~gH~~~V~sla~--dg~~l~S~ 514 (838)
++.++| +. ...+..|..+|++++ +||.+||+|...+.|.+||++.+ . ...|.-|+..|.+|++ +.++++||
T Consensus 469 vysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 469 VYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred EEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEec
Confidence 999976 32 223557999999985 58999999999999999999844 3 5567779999999996 56789999
Q ss_pred cCCCCeeeeecCCCCC
Q 003217 515 ANHGGIRGWNVTSPGP 530 (838)
Q Consensus 515 S~DgtIrlWdl~s~~~ 530 (838)
|-|..|.+|++..|..
T Consensus 549 SlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 549 SLDTNVIIYSVKKPAK 564 (603)
T ss_pred cccceEEEEEccChhh
Confidence 9999999999987643
No 51
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.2e-22 Score=224.20 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=195.6
Q ss_pred EEEEecCCE-EEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEE-EEEc-CCCCEEEEEeC
Q 003217 136 RTIVCTEEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGD-EASGVVWSGHR 211 (838)
Q Consensus 136 ~~l~~~~~~-l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~-la~s-~dg~~LaSGs~ 211 (838)
|+++..... +.+ |.|+++|||+-....-.. ..+|.. + .+-|.+ +++. .++..|.+|+.
T Consensus 18 r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~---------------~~~~~~--~-~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 18 RAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE---------------THAFEG--P-KGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred heeEecCCeEEeecCCCCceeeeeccCccccc---------------ceeccc--C-cceeeccceeccccCcceEeecc
Confidence 444444443 444 459999999974322111 112221 1 334444 4444 36678999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
|++|.+|...+. .+...|+||+..|.|+....++.|+|||+|.|+|||...... .++.
T Consensus 80 D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~--~~l~------------ 137 (745)
T KOG0301|consen 80 DTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELV--YSLQ------------ 137 (745)
T ss_pred cceEEEEecCCC--------CchhhhhccccceeeeecCCcCceEecccccceEEecchhhh--cccC------------
Confidence 999999999886 678899999999999999888999999999999999873321 1111
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
+| ...|-.+++-+.+ ++.+|+ |++|++|.. ++++++|.+
T Consensus 138 -------gH----------~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-------------------- 177 (745)
T KOG0301|consen 138 -------GH----------TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-------------------- 177 (745)
T ss_pred -------Cc----------chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--------------------
Confidence 12 2234445555555 555555 789999986 555555443
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCC
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN 450 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~ 450 (838)
|...|+.|++-+++.++|++.||.||+|+++|+
T Consensus 178 -----------------------------------------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 178 -----------------------------------------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred -----------------------------------------------chhheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 344456677778888999999999999999999
Q ss_pred eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe-CCCEEEEEcCCCCeeeeecCC
Q 003217 451 RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrlWdl~s 527 (838)
++.++.+|++-|++++. ++..|+++++|+++|+|+.. .|.+.+...+-.||++.. ...-++.|+.||.||+|....
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999999999973 57799999999999999976 777888777778999874 556689999999999999653
No 52
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.5e-24 Score=205.84 Aligned_cols=143 Identities=35% Similarity=0.520 Sum_probs=125.3
Q ss_pred CEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHH-HHH
Q 003217 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-RNA 710 (838)
Q Consensus 632 ~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~-Rn~ 710 (838)
.|+.+.+.+|+++.+.+|++.++..++.++++.++++|+++.+||||+|+++++++++.+|||+|||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999998888 999
Q ss_pred HHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhc
Q 003217 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQR 790 (838)
Q Consensus 711 d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~ 790 (838)
||++|++++.|...... ..+......+|+|||+||||||+...++.+...++.++
T Consensus 82 d~~~i~~~~~~~~~~~~-------------------------~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~ 136 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPA-------------------------SEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVK 136 (145)
T ss_pred cHHHHHhhccccccCcc-------------------------cccccccccccEEEEecceeeeecCcccccchhhhhhc
Confidence 99999999998753221 00000011289999999999999984488899999999
Q ss_pred chHHHhhcc
Q 003217 791 CFDWLRERD 799 (838)
Q Consensus 791 ~~~~Ll~~D 799 (838)
.++.|+++|
T Consensus 137 ~~~~l~~~d 145 (145)
T KOG0565|consen 137 SRDGLLEKD 145 (145)
T ss_pred chhhhhccC
Confidence 999998876
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-22 Score=221.27 Aligned_cols=238 Identities=13% Similarity=0.186 Sum_probs=197.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..-|.|+.+.|.--++..+-+.|.+.+|+.++. ....++.--.-||.+..|-+--+ +++||+|..|||++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 557999999999999999999999999999985 45667766678999999988655 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCcc-EEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRE-LLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~-~l~~ 347 (838)
.+.++...++. | +..+++++..|....|.+++| .+|++||-..+- |.++
T Consensus 85 nt~ekV~~FeA-------------------H----------~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 85 NTGEKVKTFEA-------------------H----------SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred ccceeeEEeec-------------------c----------ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE
Confidence 88776554432 2 556889999988888888885 699999976432 2223
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
|.+|.+-|..++|
T Consensus 136 -------------------------------------------------------------------feGH~HyVMqv~f 148 (794)
T KOG0276|consen 136 -------------------------------------------------------------------FEGHEHYVMQVAF 148 (794)
T ss_pred -------------------------------------------------------------------EcCcceEEEEEEe
Confidence 4455555666777
Q ss_pred cCCC--cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE-c---CCEEEEEeeCCeEEEEeCCC-ccccccccccc
Q 003217 428 SIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-F---GSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (838)
Q Consensus 428 S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~-d---G~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (838)
.|.. +.+|+|-|+|||+|.+ ...+..||++|...|+|+.. . ..+|++|+.|.+|+|||-.+ .|+++|.||+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 6643 4899999999999999 67899999999999999965 2 34999999999999999874 68999999999
Q ss_pred CEEEEEeCCC--EEEEEcCCCCeeeeecCCCCCCc
Q 003217 500 PVIKMAVGAG--YIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 500 ~V~sla~dg~--~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
.|..+.+++. .++|||.|||+|+|+-.++...+
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 9999999887 58899999999999988776544
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=208.24 Aligned_cols=271 Identities=17% Similarity=0.239 Sum_probs=202.8
Q ss_pred ecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCC--CCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 140 CTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGE--DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 140 ~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
.++..|.+|+ ||-|-|||.-++.... .- .....| ..+ ..+|.|+.|+.|..+||||+.||.|+
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~f--MMm-d~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNF--MMM-DDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhh-----------hhhhhhhcce--eec-ccceEEEeecccHHHhhccCcCCcEE
Confidence 3455566654 9999999986543211 10 000112 234 77999999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeece
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
+|.+.+| .+++.|. +|+..|+++.||.|+. ++|+|.|.+||+-.+.++++...+
T Consensus 289 vWri~tG--------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf---------------- 344 (508)
T KOG0275|consen 289 VWRIETG--------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF---------------- 344 (508)
T ss_pred EEEEecc--------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh----------------
Confidence 9999999 5677775 9999999999999986 999999999999998776543322
Q ss_pred eecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccccee
Q 003217 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
++| ++.+.-..+.++|..|.+++ |++|++|+.+|.+|+.+|.+.+.-
T Consensus 345 ---rGH----------sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d------------------- 392 (508)
T KOG0275|consen 345 ---RGH----------SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD------------------- 392 (508)
T ss_pred ---cCc----------cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------------------
Confidence 233 34455556667777777766 789999999999999888653310
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCeee
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQ 453 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~ 453 (838)
-.+.++-..|. ....++.+-..++|.+-++.|+.++
T Consensus 393 ----------~~vnsv~~~PK----------------------------------npeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 393 ----------YPVNSVILLPK----------------------------------NPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred ----------ccceeEEEcCC----------------------------------CCceEEEEcCCCeEEEEeccceEEe
Confidence 00000000000 0123667777889999999999999
Q ss_pred EeecC----CccEEEE-EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 454 DFQYL----PFAVQCL-CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 454 tl~~H----~~~V~sl-s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|... ..-|.|+ ++-|.++++.++|+.++.+.+. |++-+++.-|...|..++. +.+.++|-|.||.+++|.
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98742 3456654 7789999999999999999975 9999999999999999985 556788999999999995
No 55
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=6.2e-21 Score=204.69 Aligned_cols=277 Identities=13% Similarity=0.223 Sum_probs=207.2
Q ss_pred eeEEEE--ecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIV--CTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~--~~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
=+.+|+ .+++.|..| .||.+|+|+...... ..| .-| .+||++|.++.+|.+|+||+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl--~~H-kgPI~slKWnk~G~yilS~~ 295 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STL--GQH-KGPIFSLKWNKKGTYILSGG 295 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhh--hcc-CCceEEEEEcCCCCEEEecc
Confidence 344454 335566654 589999999753211 111 123 88999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
.||++.+||.-++ ...+.+.-|..+-..|.+-.+..+++.+.|+.|+|..+.......++.
T Consensus 296 vD~ttilwd~~~g--------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~----------- 356 (524)
T KOG0273|consen 296 VDGTTILWDAHTG--------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI----------- 356 (524)
T ss_pred CCccEEEEeccCc--------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee-----------
Confidence 9999999999887 456677778888677888888889999999999999985433222221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
+| ++.|.++-..+.+..+++++| +|++||....+.+...|..|.+.+....
T Consensus 357 --------GH----------~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~---------- 408 (524)
T KOG0273|consen 357 --------GH----------HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK---------- 408 (524)
T ss_pred --------cc----------cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe----------
Confidence 22 567888888888889999885 7999999888777777766654321111
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-C
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N 448 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~ 448 (838)
|++. |....+. ..+-.+++++.|++|++||+ .
T Consensus 409 -------wsp~--------------------------------g~v~~n~--------~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 409 -------WSPT--------------------------------GPVTSNP--------NMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred -------ecCC--------------------------------CCccCCC--------cCCceEEEeecCCeEEEEEccC
Confidence 1111 0000000 01124788999999999999 7
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeee
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlW 523 (838)
|.++.+|..|..+|++|++ +|+++|+|+.||.|.+|+.. +++.+.+++ ++.|..|.+ +|+++.-+..|+.+++-
T Consensus 442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 9999999999999999976 59999999999999999987 788888876 455888875 78888888899999998
Q ss_pred ecC
Q 003217 524 NVT 526 (838)
Q Consensus 524 dl~ 526 (838)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 864
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-20 Score=189.14 Aligned_cols=233 Identities=17% Similarity=0.184 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
.+-|..++++|. |.+|||++.|..||+|+...+ +.+.+...+ .+|+..|.++|++|.|+ |++||.|.|+-||
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-----~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-----DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCC-----CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 668999999998 789999999999999998853 223444444 58999999999999999 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc---
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--- 343 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~--- 343 (838)
.-...+... .. .+.+| -++|++++.+.+|..+++++ |+.|=+|.+..+.
T Consensus 89 ~k~~~efec--------v~---------~lEGH----------EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 89 KKEDGEFEC--------VA---------TLEGH----------ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred ecCCCceeE--------Ee---------eeecc----------ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 875433211 11 12233 56899999999999999988 6789999876332
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
++.+| .+|.+.|.
T Consensus 142 c~aVL-------------------------------------------------------------------~~HtqDVK 154 (312)
T KOG0645|consen 142 CIAVL-------------------------------------------------------------------QEHTQDVK 154 (312)
T ss_pred EEeee-------------------------------------------------------------------cccccccc
Confidence 22223 23444444
Q ss_pred EEEEcCC-CcEEEEECCCeEEEEcCC-C---CeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCCcccccc-c
Q 003217 424 ALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGW-V 495 (838)
Q Consensus 424 ala~S~d-g~l~Sgs~DgtIrlWD~~-g---~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l-~ 495 (838)
.+.+.|- +.|+|+|-|+|||+|+-. + +|.+++.+|.+.|.+++++ |.+|++++.|++|+||-.- ..+ .
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~~~~~ 230 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----TDLSG 230 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----cCcch
Confidence 4555553 458999999999999873 4 6999999999999999874 7899999999999999843 222 2
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
-|+..++.++++...|+|++.|+.||++.-.
T Consensus 231 ~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 231 MHSRALYDVPWDNGVIASGGGDDAIRLFKES 261 (312)
T ss_pred hcccceEeeeecccceEeccCCCEEEEEEec
Confidence 4778899999887789999999999999854
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.9e-22 Score=205.24 Aligned_cols=244 Identities=19% Similarity=0.285 Sum_probs=191.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+-+-|..|+|||++|+|||.||.|.+|+..+|...-+-..+..-.|.-|..+|.|+.||.|.. |+||+.||.||||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 5678999999999999999999999999998873110011111223445789999999999998 799999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++.+...+.. +| +..+.++.++.++..+.+++ |.++++--+++|++++.|
T Consensus 293 ~tG~ClRrFdr------------------AH----------tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 293 ETGQCLRRFDR------------------AH----------TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ecchHHHHhhh------------------hh----------ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 98876544321 22 45678888988888888888 679999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+|... |....|+
T Consensus 345 rGHsSy-------------------------------------------------------------------vn~a~ft 357 (508)
T KOG0275|consen 345 RGHSSY-------------------------------------------------------------------VNEATFT 357 (508)
T ss_pred cCcccc-------------------------------------------------------------------ccceEEc
Confidence 776543 2223466
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeec--CCccEEEEEE---cCCEEEEEeeCCeEEEEeCCCccccccccc----
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLGGWVAH---- 497 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i~~l~gH---- 497 (838)
+||. ++|+|.||+||+|+. +++|+.+|+. ...+|+++-. +..+++++....+|.+.++.|+.++++..-
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 7776 899999999999999 7899999984 4457888754 456899999999999999999998888632
Q ss_pred ccCEEEE-EeCCCEEEEEcCCCCeeeeecCCCC
Q 003217 498 SSPVIKM-AVGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 498 ~~~V~sl-a~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
.+.|.++ .+.|.+++..+.|+.+..+.+.+.+
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 2346654 5789999999999999999877644
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=189.89 Aligned_cols=266 Identities=17% Similarity=0.226 Sum_probs=201.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.++.|.-||++..+++.|.+||+|+.-.| .++.+..||...|..++.+.|.. ++||+.|+.|-+||+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeeccccc--------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 779999999999999999999999999999887 67889999999999999999875 999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE--EE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~--l~ 346 (838)
++++.... +++| -..|..+.+......|++++ |.++++||-++..+ ++
T Consensus 89 ~TGkv~Rr-------------------~rgH----------~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 89 NTGKVDRR-------------------FRGH----------LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccCeeeee-------------------cccc----------cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 88754322 2333 34567777877777888888 57899999987532 33
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCcccc--CCCce
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFGD--DNRRT 422 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~~~--~~~~v 422 (838)
+|.... +. +.++.. ....++.|+.||..|... +|++.. -...|
T Consensus 140 ildea~-----------------D~--------------V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 140 ILDEAK-----------------DG--------------VSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred hhhhhc-----------------Cc--------------eeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 321100 00 001111 122456788888766654 455443 24678
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEE----EEEcCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+++.||+||. .+.++.|+++|+-|- +|+.++.++||.+.=.- +.....++++|++||.|.+||+. +.++..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999999998 688899999999999 79999999999986543 33456799999999999999986 77888898
Q ss_pred ccccC-EEEEEeCCCE--EEEEcCCCCeeeeecCC
Q 003217 496 AHSSP-VIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 496 gH~~~-V~sla~dg~~--l~S~S~DgtIrlWdl~s 527 (838)
.|... |.+|+..++. ++++ .++.+..|--..
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITA-TGHGDLFWYQEN 300 (307)
T ss_pred cCCceeEEeeecccCccceeEe-cCCceeceeehh
Confidence 88887 7888877663 4444 455667776443
No 59
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.87 E-value=1.5e-22 Score=206.22 Aligned_cols=119 Identities=25% Similarity=0.296 Sum_probs=96.0
Q ss_pred ccCCCceeEEEEEEcCeEEEEEeccccCCcchH-----------HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeee
Q 003217 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (838)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (838)
.++.||.+.+|++++++.|||||+||.++.+|+ +.|.+++..|+.++.
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------------- 122 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------------- 122 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh---------------------
Confidence 378999999999999999999999999998765 457788888887631
Q ss_pred cccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHH-------Hh------hhcchHHHhhccchHHHHhc-
Q 003217 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD-------FI------SQRCFDWLRERDQLRAEMEA- 807 (838)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~-------~i------~~~~~~~Ll~~DQL~~~~~~- 807 (838)
..+...+++|||||||||+++..+.+-.. .+ ...+|.+|+++|||.+|+++
T Consensus 123 ---------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~f 187 (356)
T PTZ00312 123 ---------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRF 187 (356)
T ss_pred ---------------hccCCCCcEEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhh
Confidence 12346799999999999999755432211 11 14569999999999999995
Q ss_pred ------------CCCcCCcccCCCCCCCCCcc
Q 003217 808 ------------GNVFQGMREADIKFPPTYKF 827 (838)
Q Consensus 808 ------------~~~f~gf~E~~I~F~PTYK~ 827 (838)
.+.|.++.|+||+||||||-
T Consensus 188 d~e~q~l~~~va~~s~~eLaE~pI~FpPTYkr 219 (356)
T PTZ00312 188 DLELQRLMDVVAQQSGVELAEFAIRFPPTYPR 219 (356)
T ss_pred hhhhhhhhhhhhhhcccchhcccccCCCcchh
Confidence 66778999999999999994
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=2.3e-20 Score=190.78 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=193.9
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.++.++.+ .+++ |.|..|-+|+.-. -| ++... ..+| .++|+.|.+.+|+..|+|++.
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----dc------------eN~~~--lkgH-sgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG----DC------------ENFWV--LKGH-SGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc----cc------------cceee--eccc-cceeEeeeeccCCCEEEEecC
Confidence 445555433 4444 6799999999632 12 22222 2245 889999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
|.+|+.||+++| +.+..+++|.+-|+++.-+.-|. | .|||.|+|+||||+...+...++. .
T Consensus 111 Dk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~-------- 173 (338)
T KOG0265|consen 111 DKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N-------- 173 (338)
T ss_pred CceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c--------
Confidence 999999999999 77889999999999999665564 4 599999999999997644322211 0
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
...+..+.+...+..+.+|+ ++.|++||++.++.+.++.+|...+..+..++......
T Consensus 174 ---------------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 174 ---------------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred ---------------------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 12355666777777888888 67899999999999999999988777666666555443
Q ss_pred ----ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 369 ----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 369 ----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
+..+++|.+..- ...+.++.. ..|+.- .|. ......++||+++ +-+|+.|..+.
T Consensus 233 snsMd~tvrvwd~rp~--~p~~R~v~i-------f~g~~h---------nfe---knlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPF--APSQRCVKI-------FQGHIH---------NFE---KNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccccceEEEEEeccc--CCCCceEEE-------eecchh---------hhh---hhcceeeccCCCCccccccccceEE
Confidence 333333322211 111111111 111110 010 1223467899988 77899999999
Q ss_pred EEcCCC-CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 444 QWDPNG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 444 lWD~~g-~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
+||.++ .++..+.||...|+++.+ ....|.++++|.+|.|=.
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999965 788999999999999976 456999999999998743
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=2.3e-19 Score=188.31 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=189.0
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.++... ++.|+++ .|+.|++||+.+..... ....+ ..++.++.+.++++.|++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~-~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR-------------------TLKGH-TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE-------------------EEecC-CcceeEEEECCCCCEEEEEc
Confidence 35555544 3456654 48999999987532211 11123 56788999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||.|++|++.++ +....+.+|...|.++.|++++++ ++++.|+.|++|++.+......+.
T Consensus 71 ~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------- 132 (289)
T cd00200 71 SDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------- 132 (289)
T ss_pred CCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------
Confidence 9999999999885 456778899999999999999884 567779999999996533222111
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.+ ...+.++...+.+..+++++ ++.|++||+++++++..+..+......
T Consensus 133 ---------~~----------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~----------- 182 (289)
T cd00200 133 ---------GH----------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS----------- 182 (289)
T ss_pred ---------cC----------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccce-----------
Confidence 01 33567777777777888887 789999999988887777644322111
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCceEEEEEcCCCcEE-EEECCCe
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIW-TGGANGL 441 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~ala~S~dg~l~-Sgs~Dgt 441 (838)
+.+.+++...+++..++..+++.. ..+..+...+.++.+++++.++ +++.|+.
T Consensus 183 --------------------~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 183 --------------------VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred --------------------EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 222333333444444554444431 1233456688899999988755 5555999
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
|++||. +++.+..+..|...|.++++ ++++|++++.|+.|++||
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 58888999999999999876 568999999999999996
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=205.00 Aligned_cols=255 Identities=16% Similarity=0.270 Sum_probs=186.8
Q ss_pred CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 143 ~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+.|.. |+|.-|++|+....... +..++.| .++|+.+.|+++++.+.+++.|+..++|++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred chhhhcchhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 35554 67999999998532211 1122333 568999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 299 (838)
+.. +...+|.||++.|+++.|..... ++|||.|.|||+||+....+.-+..+..
T Consensus 249 d~~--------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S----------------- 303 (459)
T KOG0288|consen 249 DSL--------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS----------------- 303 (459)
T ss_pred cch--------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-----------------
Confidence 986 67888999999999999987654 8999999999999997654443332211
Q ss_pred ceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEe
Q 003217 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (838)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (838)
.+..++.+ ...+.|+. |++|+.||.++..+..+...+
T Consensus 304 -------------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--------------------------- 341 (459)
T KOG0288|consen 304 -------------QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--------------------------- 341 (459)
T ss_pred -------------cccceEec--ceeeeecccccceEEEeccCCceeeEeecC---------------------------
Confidence 11111211 22334443 578999999988765443222
Q ss_pred cCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEee
Q 003217 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQ 456 (838)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~ 456 (838)
+.|.+|..+++|. |++++.|.++++.|+. .+..++|.
T Consensus 342 -----------------------------------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 342 -----------------------------------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred -----------------------------------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 1345666777877 8888999999999994 46666665
Q ss_pred c------CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Cccccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 457 Y------LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 457 ~------H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
. |.-.--+++++++|+++||.||.|+||++. |++-..+...+. .|+++++ .|.++++++.++.+++|.
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3 332222457899999999999999999987 788666665444 5999997 477899999999999994
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=216.02 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=181.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------c------------------------------------CC-
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------L------------------------------------DS- 227 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~------~------------------------------------~~- 227 (838)
.++|+|+-||+||++||||+.||.||||.+.... + ..
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 7899999999999999999999999999976500 0 00
Q ss_pred -------CC--CcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 228 -------DD--GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 228 -------~~--~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
.. .-++.+.|+||.+.|..|.||.++-|+|+|.|+|||||.+...+++..+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-------------------- 406 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-------------------- 406 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--------------------
Confidence 00 1122356789999999999999999999999999999999765543322
Q ss_pred cceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
.++.-|+|+++.|.+ ..+.+|+ |+.|+||++...++..
T Consensus 407 ----------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------------------------ 446 (712)
T KOG0283|consen 407 ----------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------------------------ 446 (712)
T ss_pred ----------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------------------------
Confidence 226679999998854 4566777 7889999987554310
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeee-E
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQ-D 454 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~-t 454 (838)
|.. -..-|+++.++|||+ .+.|+-+|.+++++..|..++ .
T Consensus 447 W~D--------------------------------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 447 WND--------------------------------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ehh--------------------------------------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 111 112367889999999 689999999999999775443 2
Q ss_pred ee--cC------CccEEEEEE---cCCEEEEEeeCCeEEEEeCC-CcccccccccccC---EEE-EEeCCCEEEEEcCCC
Q 003217 455 FQ--YL------PFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP---VIK-MAVGAGYIFTLANHG 518 (838)
Q Consensus 455 l~--~H------~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~---V~s-la~dg~~l~S~S~Dg 518 (838)
+. .| ...|+.|-+ +...|++.+.|..|||+|.. .+++..|+|+.+. +.+ +..||++|+++|.|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 32 11 127998854 23478888999999999986 5789999987653 332 346999999999999
Q ss_pred CeeeeecCCCCC
Q 003217 519 GIRGWNVTSPGP 530 (838)
Q Consensus 519 tIrlWdl~s~~~ 530 (838)
.|.+|+...+..
T Consensus 569 ~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 569 WVYIWKNDSFNS 580 (712)
T ss_pred eEEEEeCCCCcc
Confidence 999999866443
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.9e-20 Score=209.20 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=192.8
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003217 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (838)
Q Consensus 150 d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~ 229 (838)
.|.|++||..=..... -|-+ | .+||..+.|.|++-+++||+.|-+||||+..+.
T Consensus 30 sG~IQlWDYRM~tli~-----------------rFde--H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r------ 83 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLID-----------------RFDE--H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR------ 83 (1202)
T ss_pred CceeeeehhhhhhHHh-----------------hhhc--c-CCccceeeecCCCCeEEecCCccEEEEEecccc------
Confidence 5789999975322211 1333 3 889999999999999999999999999999886
Q ss_pred CcceeEEeccccccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceee
Q 003217 230 GFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (838)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 308 (838)
+++.+|.||-+.|..+.|.+.= .++|+|+|.|||||++.+..+.-.++ +|
T Consensus 84 --rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-------------------GH-------- 134 (1202)
T KOG0292|consen 84 --RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-------------------GH-------- 134 (1202)
T ss_pred --eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-------------------cC--------
Confidence 7889999999999999999854 48999999999999998765543333 23
Q ss_pred eecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccC-cccc--cccceeeEEEecCCCCc
Q 003217 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL-PDFA--MEDEFKTKIVTSSKKDK 384 (838)
Q Consensus 309 ~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~-~~~~--~~~~~~~~~~s~~~~~~ 384 (838)
+..|.|..+.+....|+|++ |.||++||+.--.. +... .+..+..+..... .+.. .|.-+| .++.+ +++
T Consensus 135 --nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk-k~~~-pg~~e~~~~~~~~~~dLfg~~DaVVK-~VLEG--HDR 207 (1202)
T KOG0292|consen 135 --NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK-KNKA-PGSLEDQMRGQQGNSDLFGQTDAVVK-HVLEG--HDR 207 (1202)
T ss_pred --ceEEEeeccCCccceEEEecccceEEEEeecchhc-cCCC-CCCchhhhhccccchhhcCCcCeeee-eeecc--ccc
Confidence 33577777888788899988 89999999853111 1111 1111111111111 0100 111112 11222 244
Q ss_pred ceeeeeEeecCcceeeecCCcEEEEec--------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeE
Q 003217 385 AQSSFGFFQRSRNAIMGAADAVRRVAA--------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (838)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~t 454 (838)
.+.-.+|.+.-..++.|+.|-...+|. ..++.+|...|.++.|.|... |+|.|.|++||+||+ +-..+++
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 444556777667778888876555443 346778999999999998655 789999999999999 5689999
Q ss_pred eecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 455 FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 455 l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
|.-..++-++++.. .+.+++ +.|+.+.|+-++
T Consensus 288 frrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 288 FRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred eeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 98777777888765 455555 567778788766
No 65
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=8.1e-21 Score=211.81 Aligned_cols=229 Identities=20% Similarity=0.338 Sum_probs=180.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEE-EEEec--CCCEEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS-LCISS--YGDLWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~s-lafs~--dG~L~SgS~DgtIrvW 267 (838)
..-|..+++- ++..+++||.||++|+|+-.... .-+...+++|.+.|.. +++-+ .|+|++|+.|.+|.+|
T Consensus 14 ~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 14 KSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQ------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred ccchheeEec-CCeEEeecCCCCceeeeeccCcc------cccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 5567666665 45689999999999999976531 1233568899998887 88765 3459999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~ 346 (838)
.+.+......+ ++| .+.|.++....++. +.||++ .|+++|-. +++..
T Consensus 87 ~~~~~~P~~~L-------------------kgH----------~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~ 134 (745)
T KOG0301|consen 87 KLSQAEPLYTL-------------------KGH----------KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVY 134 (745)
T ss_pred ecCCCCchhhh-------------------hcc----------ccceeeeecCCcCc-eEecccccceEEecc--hhhhc
Confidence 99765544333 333 44566666665554 788885 68999964 22211
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+ +.+|...|.+++
T Consensus 135 ~-------------------------------------------------------------------l~gH~asVWAv~ 147 (745)
T KOG0301|consen 135 S-------------------------------------------------------------------LQGHTASVWAVA 147 (745)
T ss_pred c-------------------------------------------------------------------cCCcchheeeee
Confidence 1 224445566677
Q ss_pred EcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEE
Q 003217 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 427 ~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla 505 (838)
.-|++.++|||.|++||+|.. |+++++|.+|++-|..++. ++..++|++.||.|++||+.|.++..+.||++-|++++
T Consensus 148 ~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence 667778999999999999986 8899999999999999987 67799999999999999999999999999999999997
Q ss_pred --eCCCEEEEEcCCCCeeeeecC
Q 003217 506 --VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 506 --~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+++.++|+|.|+++|+|+..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC
Confidence 477889999999999999954
No 66
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=8.6e-20 Score=210.41 Aligned_cols=248 Identities=15% Similarity=0.149 Sum_probs=169.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~-----~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (838)
.|.+...++++..+++++.+..+..|+..++.. +..........+.||+++|++++|+| ++. |+|||.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455666777777888888888888998765421 00010111234789999999999999 776 89999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~ 343 (838)
+||+.+........ .. ...+.+| ...|.++++.+.+ ..+++++ |++|+|||+.+++
T Consensus 102 IWdi~~~~~~~~~~---~~---------l~~L~gH----------~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 102 GWGIPEEGLTQNIS---DP---------IVHLQGH----------TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEecCCCccccccC---cc---------eEEecCC----------CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 99996532100000 00 0112223 4567888888764 5777776 6899999999887
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
.+..+.. |...|.
T Consensus 160 ~~~~l~~-------------------------------------------------------------------h~~~V~ 172 (493)
T PTZ00421 160 AVEVIKC-------------------------------------------------------------------HSDQIT 172 (493)
T ss_pred EEEEEcC-------------------------------------------------------------------CCCceE
Confidence 6544322 223356
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEE-EE--EEcCCEEEEEe----eCCeEEEEeCC--Ccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CL--CTFGSQIWVGY----MNGIVQVLDLE--GNLLG 492 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~-sl--s~dG~~LasGs----~DgtIrlWD~~--g~~i~ 492 (838)
+++++++|. |++|+.|++|++||+ +++.+.++.+|.+.+. .+ ..++.+|++++ .|++|+|||+. .+++.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 788888887 789999999999999 7899999999987543 22 23556666543 48999999986 34455
Q ss_pred ccccccc-CEEEEE--eCCCEEEEEc-CCCCeeeeecCCCC
Q 003217 493 GWVAHSS-PVIKMA--VGAGYIFTLA-NHGGIRGWNVTSPG 529 (838)
Q Consensus 493 ~l~gH~~-~V~sla--~dg~~l~S~S-~DgtIrlWdl~s~~ 529 (838)
....|.. .+.... .+++.+++++ .|++||+|++....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4444443 333333 4778888887 59999999987643
No 67
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=1.7e-19 Score=209.18 Aligned_cols=228 Identities=14% Similarity=0.128 Sum_probs=156.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
.++|.+++|+|+ +.+|+||+.||+|++||+.++.............+.+|.+.|++|+|+|++. |+|||.|++|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 789999999996 7899999999999999997641000000123446789999999999999986 4799999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|+.++.....+. + ...+.++++++++..+++++ +++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~i~--------------------~----------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 154 DIENEKRAFQIN--------------------M----------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCcEEEEEe--------------------c----------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 997654322211 0 23467788888888888765 6799999999999887
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
++.+|..... .+ .+....
T Consensus 204 tl~gH~g~~~-------------------------------------------------s~-------------~v~~~~ 221 (568)
T PTZ00420 204 SFHIHDGGKN-------------------------------------------------TK-------------NIWIDG 221 (568)
T ss_pred EEecccCCce-------------------------------------------------eE-------------EEEeee
Confidence 7765432100 00 001122
Q ss_pred EcCCC-cEEEEECCC----eEEEEcCC--CCeeeEeecCC--ccEEEEE-E-cCCEEEEEeeCCeEEEEeCCCc---ccc
Q 003217 427 TSIDG-MIWTGGANG----LLLQWDPN--GNRLQDFQYLP--FAVQCLC-T-FGSQIWVGYMNGIVQVLDLEGN---LLG 492 (838)
Q Consensus 427 ~S~dg-~l~Sgs~Dg----tIrlWD~~--g~~l~tl~~H~--~~V~sls-~-dG~~LasGs~DgtIrlWD~~g~---~i~ 492 (838)
+++++ .|++++.|+ +|+|||+. ++++.++..+. +.+..+. . +|.++++|+.|++|++|++... .+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 44554 477777663 79999994 57777665433 3333332 2 4779999999999999998633 233
Q ss_pred cccccccCEEEEEeCCCEE
Q 003217 493 GWVAHSSPVIKMAVGAGYI 511 (838)
Q Consensus 493 ~l~gH~~~V~sla~dg~~l 511 (838)
.+. |..++.++++-++..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred ccc-cCCCccceEEccccc
Confidence 433 566777777655443
No 68
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=2.3e-19 Score=208.05 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=158.5
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
.|+.++.|++|+.... .....+.||.++|.+++|+|+ +. |+|||.|++|||||+.+.........+ ..
T Consensus 49 gGG~~gvI~L~~~~r~--------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~--p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD--PQ 118 (568)
T ss_pred CCCceeEEEeeecCCC--------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc--ce
Confidence 3778899999998764 467789999999999999997 55 789999999999999653211000000 00
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCE-EEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
..+.+| ...|.++++++.+.. +++++ |++|+|||+++++.+..+..
T Consensus 119 ---------~~L~gH----------~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~------------- 166 (568)
T PTZ00420 119 ---------CILKGH----------KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM------------- 166 (568)
T ss_pred ---------EEeecC----------CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-------------
Confidence 011222 456888888887765 45655 78999999998765432210
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLL 442 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtI 442 (838)
...|.+++|+++|. |++++.|++|
T Consensus 167 -------------------------------------------------------~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 167 -------------------------------------------------------PKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred -------------------------------------------------------CCcEEEEEECCCCCEEEEEecCCEE
Confidence 11245678899988 5677889999
Q ss_pred EEEcC-CCCeeeEeecCCccEEE--EE-----EcCCEEEEEeeC----CeEEEEeCC--Cccccccccc--ccCEEEEE-
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQC--LC-----TFGSQIWVGYMN----GIVQVLDLE--GNLLGGWVAH--SSPVIKMA- 505 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~s--ls-----~dG~~LasGs~D----gtIrlWD~~--g~~i~~l~gH--~~~V~sla- 505 (838)
++||+ ++++++++.+|.+.+.+ +. .++.+|++++.| ++|+|||+. ++++..+..+ .+.+....
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 99999 78999999999886543 22 467789988876 489999987 4566554433 33333332
Q ss_pred e-CCCEEEEEcCCCCeeeeecCC
Q 003217 506 V-GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 506 ~-dg~~l~S~S~DgtIrlWdl~s 527 (838)
. ++.++++|+.|++||+|++..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccC
Confidence 2 477889999999999999854
No 69
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.2e-20 Score=208.89 Aligned_cols=275 Identities=17% Similarity=0.272 Sum_probs=195.5
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee--eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 144 ~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
.|++ |.|+.||+|+...-.. +...|+.. ..| ..+|..++.-.+|+.|+|+|.|-+|++|+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~---------------~~s~~~~asme~H-sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSN---------------EPSTPYIASMEHH-SDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred eEEecCCCceEEEeccccccC---------------Ccccchhhhhhhh-HhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 4777 5699999999854322 11122111 123 789999998889999999999999999998
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEE-ecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
..+. .-+..++.-|+..|.+|+. -++.. ++||+-|+.|.|||+.++...+......
T Consensus 103 ~~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------------- 160 (735)
T KOG0308|consen 103 HKDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN---------------- 160 (735)
T ss_pred ccCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc----------------
Confidence 7751 1245667889999999999 66665 5799999999999998764322211110
Q ss_pred cceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEE
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (838)
.+.....+-+...+.+++..+.+..+++|+ .+-+++||.+|++.+-.|.
T Consensus 161 --~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---------------------------- 210 (735)
T KOG0308|consen 161 --VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---------------------------- 210 (735)
T ss_pred --cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee----------------------------
Confidence 011111111244567777777666777766 3679999999876533222
Q ss_pred ecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe
Q 003217 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF 455 (838)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl 455 (838)
+|...|.+|..++||+ ++|+|.||+||+||+ ..+|+.++
T Consensus 211 ---------------------------------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 211 ---------------------------------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred ---------------------------------------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 3444456777888986 999999999999999 68999999
Q ss_pred ecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 456 QYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 456 ~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
..|...|+++..+ =+++++|+.||.|..=|+.. ++...+ -...+|..+.. +.+.++.+.+|+.|+.|...
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999664 45999999999999999864 222222 23345655542 34556788899999999854
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5e-20 Score=188.62 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=201.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (838)
...|+-++.+....++.|+|.|.+.++|.+++| .++.+..||.+.|++|.|++.+.| ++||.|++..||..
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESG--------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccc--------cceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 668999999887789999999999999999998 788999999999999999999985 79999999999983
Q ss_pred CC----cc----eeeecCCCceeee----E----EEEee-----ceeecccceeccceeeeecCCeEEEEEcCCCCEEEE
Q 003217 270 EA----IE----KALSLKPEERHTA----A----LIVER-----SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (838)
Q Consensus 270 ~~----~~----~~~~~~~~~~~~~----~----~~~~~-----s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s 328 (838)
.- -. ...+...+..+.. . ...+. .+..+.+| ..-|.+.---.++..+.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH----------~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH----------RAVVSACDWLAGGQQMVT 289 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc----------ccceEehhhhcCcceeee
Confidence 21 00 0011000000000 0 00000 00111111 011111111124567777
Q ss_pred eCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEE
Q 003217 329 AGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (838)
Q Consensus 329 ~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (838)
+++ .|..+||++||+++..|.+|.+..+... ..+..+.+++.+.|..+
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs-------------------------------tHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCS-------------------------------THPTQRLVVTSSRDTTF 338 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccc-------------------------------cCCcceEEEEeccCcee
Confidence 885 6899999999999999988865321111 11112233445556666
Q ss_pred EEec-------cCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE--cCCEEEEEe
Q 003217 408 RVAA-------KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (838)
Q Consensus 408 ~v~~-------~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~--dG~~LasGs 476 (838)
|+|. -..|.+|...|.++.|.-|.+++|||.|.|||+||+ + ...+.++.. .++++-++. .+..|+.--
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEecc
Confidence 6664 235788999999999999999999999999999999 4 356777765 556776655 456888888
Q ss_pred eCCeEEEEeCCCcccc-----cccccccCEEEEEeCC----CEEEEEcCCCCeeeeecCCCC
Q 003217 477 MNGIVQVLDLEGNLLG-----GWVAHSSPVIKMAVGA----GYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 477 ~DgtIrlWD~~g~~i~-----~l~gH~~~V~sla~dg----~~l~S~S~DgtIrlWdl~s~~ 529 (838)
..+.|||+|++|+.+. .-.||.-.|.|.++-. ..|+|++-|..+--|++..|.
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8899999999986443 4469999999998632 358899999999999987654
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.85 E-value=9.1e-19 Score=183.23 Aligned_cols=296 Identities=14% Similarity=0.165 Sum_probs=198.6
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.+++.+.+ .|.+ |.|.--.||++.++.... .-..| ..+|.|+.|+.+|.+||||..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-------------------eltgH-KDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-------------------ELTGH-KDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCccee-------------------EecCC-CCceEEEEEccCceEEEecCC
Confidence 334444423 4443 568899999997654221 11233 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|.|+||++.++ .....+.+--+.+-=|.+.|-+. |+.|+.||.|-+|.+..+.....+.
T Consensus 127 sG~v~v~~~stg--------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------- 187 (399)
T KOG0296|consen 127 SGKVLVFKVSTG--------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------- 187 (399)
T ss_pred CccEEEEEcccC--------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------
Confidence 999999999997 45555554556677788999888 6899999999999996632221111
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEE-eeecccCccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN-RVDMSLLPDFAM 368 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~-~~~~s~~~~~~~ 368 (838)
+| +..+.+=.+.++|.++.++. +++|++||..||+++..+....+.+. ...+.......+
T Consensus 188 --------Gh----------~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 188 --------GH----------NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred --------CC----------CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 12 22333334556788888876 57999999999999988764332110 111111111111
Q ss_pred ----c--------cceeeEEEecC-------CCCcceeeeeEeec---CcceeeecCCcEEEEeccC-----ccccCCCc
Q 003217 369 ----E--------DEFKTKIVTSS-------KKDKAQSSFGFFQR---SRNAIMGAADAVRRVAAKG-----GFGDDNRR 421 (838)
Q Consensus 369 ----~--------~~~~~~~~s~~-------~~~~~~~s~~~~~~---~~~~~~g~~~~v~~v~~~g-----~~~~~~~~ 421 (838)
+ ..-|+...... ..+....++.+.+. -..+..|.-+|...++... ....|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 0 01111111110 00111112333322 2455678888877776522 22356777
Q ss_pred eEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
|..+.|-+...|++++.||+|++||. +|+++.++.||...|++++ +++++++++|.|++.+|+++.
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999988778999999999999999 8999999999999999885 578899999999999999863
No 72
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=9.1e-19 Score=201.91 Aligned_cols=224 Identities=13% Similarity=0.166 Sum_probs=153.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (838)
.++|.+++|+| ++++|+||+.||+|++||+.++.. .......+..+.+|...|.+|+|+|++ . |+||+.|++|+||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 88999999999 889999999999999999976410 001113456789999999999999986 3 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|++++.....+. +| ...+.++++++++..+++++ |++|++||+++++++.
T Consensus 154 Dl~tg~~~~~l~-------------------~h----------~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 154 DVERGKAVEVIK-------------------CH----------SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ECCCCeEEEEEc-------------------CC----------CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 997654322211 12 34577888888888888877 6799999999998877
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
.+..|.... +..+.
T Consensus 205 tl~~H~~~~------------------------------------------------------------------~~~~~ 218 (493)
T PTZ00421 205 SVEAHASAK------------------------------------------------------------------SQRCL 218 (493)
T ss_pred EEecCCCCc------------------------------------------------------------------ceEEE
Confidence 665443210 00011
Q ss_pred EcCC-CcEEEE----ECCCeEEEEcC-CC-CeeeEeecCCc-cEEEE--EEcCCEEEEEee-CCeEEEEeCC-Ccccccc
Q 003217 427 TSID-GMIWTG----GANGLLLQWDP-NG-NRLQDFQYLPF-AVQCL--CTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 427 ~S~d-g~l~Sg----s~DgtIrlWD~-~g-~~l~tl~~H~~-~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (838)
+.++ +.++++ +.|++|++||+ +. +++.....+.. .+... .+++.+|++|+. |++|++||+. ++++..+
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 2222 234433 35899999999 43 45555544443 33333 347888988885 9999999987 5654444
Q ss_pred cc-cccCEEEEEeCCCE
Q 003217 495 VA-HSSPVIKMAVGAGY 510 (838)
Q Consensus 495 ~g-H~~~V~sla~dg~~ 510 (838)
.. +..++.++++-+++
T Consensus 299 ~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 299 SYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCCcceEecccc
Confidence 32 44556666654443
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.7e-19 Score=184.02 Aligned_cols=232 Identities=19% Similarity=0.233 Sum_probs=162.3
Q ss_pred ceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC---CEEEeeC
Q 003217 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSE 260 (838)
Q Consensus 184 ~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~ 260 (838)
|..+-| .+++.|||++ +.++||||.|-+|+++|+... .+...+..|.+.|+++.|.++- .|+||++
T Consensus 37 F~~~aH-~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 37 FAFSAH-AGSITALAVS--GPYVASGSSDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccc-ccceeEEEec--ceeEeccCCCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 444455 8899999996 799999999999999999986 6677788999999999999876 5999999
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEec
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~ 339 (838)
||.|.+|++..-+..-+ +++| ...|+.++..|++....+.+ |+.+++||+
T Consensus 106 DG~i~iw~~~~W~~~~s-------------------lK~H----------~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKS-------------------LKAH----------KGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CCcEEEEEcCCeEEeee-------------------eccc----------ccccceeEecCCCceEEEEcCCceeeeehh
Confidence 99999999854322111 2233 44577788887777655554 789999999
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCc--c
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG--F 415 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~--~ 415 (838)
-+|+.-.++...... . .+.|.+.+.+-.+...+.+-.+.. ..- .
T Consensus 157 V~Gr~a~v~~L~~~a-t-------------------------------~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKA-T-------------------------------LVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE 204 (362)
T ss_pred hcCccceeeccCCcc-e-------------------------------eeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence 988764443321110 0 122333333333333333222211 000 1
Q ss_pred ccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE----cCCEEEEEeeCCeEEEEeCC
Q 003217 416 GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~----dG~~LasGs~DgtIrlWD~~ 487 (838)
.....++.++.|-..+.|++|.+|+.|++||. .+.++..|.+|.++|..+.+ ++.+|+++++||.|++||++
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 12234566666777777888888889999998 47888888899999888863 35688999999999999876
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=6.5e-20 Score=182.91 Aligned_cols=267 Identities=20% Similarity=0.239 Sum_probs=183.7
Q ss_pred CCceeeecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EE
Q 003217 182 APFKESVKGVSSVMCMVGDE---ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WS 257 (838)
Q Consensus 182 ~p~~~~~~g~~~V~~la~s~---dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~S 257 (838)
.|+.-+.| +.||..|+|+| +|-.|.|+++||.-.+-+-++| .=+-+|.||+++|++.++..+... +|
T Consensus 6 ~pl~c~gh-trpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--------dwigtfeghkgavw~~~l~~na~~aas 76 (334)
T KOG0278|consen 6 TPLTCHGH-TRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--------DWIGTFEGHKGAVWSATLNKNATRAAS 76 (334)
T ss_pred CceEEcCC-CcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------CcEEeeeccCcceeeeecCchhhhhhh
Confidence 35555566 89999999985 8999999999998888777777 568899999999999999988764 69
Q ss_pred eeCCCcEEEEECCCcceeeecCCCceeeeEEEEee--ceeecccceeccce------------eeeecCCeEEEEEcCCC
Q 003217 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER--SYIDLRSHLSVNGF------------SSILTSDIKNLLSDHSR 323 (838)
Q Consensus 258 gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~~~~~~~------------~~~~s~~v~~las~~~~ 323 (838)
++.|-|.||||.-++....++.. ..-+.++..++ ..+..-++.....+ -.-++..++.+...+.+
T Consensus 77 aaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence 99999999999877654333311 11111111111 00000000000000 00013445555555555
Q ss_pred CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec
Q 003217 324 AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (838)
Q Consensus 324 ~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~ 402 (838)
..+.|+. +++||+||.+||..+++|.-
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~---------------------------------------------------- 183 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEF---------------------------------------------------- 183 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEec----------------------------------------------------
Confidence 5555544 46777777777666554431
Q ss_pred CCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEE--EEEcCCEEEEEeeCC
Q 003217 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGSQIWVGYMNG 479 (838)
Q Consensus 403 ~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~s--ls~dG~~LasGs~Dg 479 (838)
...|.++.+++||.+++-...++|+.||. +-..++.+.. ...|.+ |.+....+++|+.|.
T Consensus 184 ----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 184 ----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred ----------------CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcce
Confidence 12344566788999888777778999999 5577777664 334554 456667899999999
Q ss_pred eEEEEeCC-Ccccccc-cccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 480 IVQVLDLE-GNLLGGW-VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 480 tIrlWD~~-g~~i~~l-~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++.+|-. |.-+..+ +||.++|.+|. +||..-+|||.|||||+|....
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999976 7777775 99999999997 5888899999999999999654
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.9e-19 Score=177.09 Aligned_cols=233 Identities=15% Similarity=0.232 Sum_probs=167.4
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+....+..|+++|.++.|.-||+ .++++.|+|||+|+...+....++.. |
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------------------h---------- 58 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------------------H---------- 58 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------------------C----------
Confidence 45667889999999999999999 57999999999999866543333322 2
Q ss_pred cCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeee
Q 003217 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (838)
-.+|..++.+.+..++++++ |+.+.+||+.||+.++.|.+|..-++.+.+...
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee-------------------------- 112 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE-------------------------- 112 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc--------------------------
Confidence 22455566666777777765 678999999999999999988765554444221
Q ss_pred eEeecCcceeeecCCcEEEEec-c-------CccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCc
Q 003217 390 GFFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~-~-------g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~ 460 (838)
+..++.|+-|...|+|. . ..+.+....|.++.++ +-.|+.||.||++|.+|+ .|+....+-+ .
T Consensus 113 -----sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g--~ 184 (307)
T KOG0316|consen 113 -----SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--H 184 (307)
T ss_pred -----ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcC--C
Confidence 11122233333333332 0 0111222334444432 234899999999999999 7987776666 4
Q ss_pred cEEEEE--EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE----eCCCEEEEEcCCCCeeeeecCC
Q 003217 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 461 ~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+|+|++ .||+...+++.|++|+|.|-+ |+++++.+||.+.=..+. .....++|||.||.|.+||+..
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 677775 489999999999999999987 899999999998877664 3567899999999999999754
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.7e-19 Score=179.16 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=168.2
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
...++.|++++.. ..+++++-||++|+||+.... .++..|+.|...|.++-+++-.+ ++++|+|+|||+|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 4578999999854 678899999999999965432 67888999999999999988543 6788999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccC-ccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDART-REL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~t-g~~ 344 (838)
+........++..+. .-|...++++ ....+++++ |+++++||++. |+.
T Consensus 133 ~~~r~~Sv~Tf~gh~-----------------------------~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHN-----------------------------SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred cCCCCcceEeecCCc-----------------------------cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 986533222222211 1122233333 344555555 68999999864 332
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+. +..|. ..+.+
T Consensus 184 ~~-i~ah~-------------------------------------------------------------------~Eil~ 195 (311)
T KOG0277|consen 184 MS-IEAHN-------------------------------------------------------------------SEILC 195 (311)
T ss_pred eE-EEecc-------------------------------------------------------------------ceeEe
Confidence 21 22221 01111
Q ss_pred EEEc--CCCcEEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC-C-ccccccc
Q 003217 425 LTTS--IDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (838)
Q Consensus 425 la~S--~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~-g-~~i~~l~ 495 (838)
.-++ .+..+++|+.|+.||.||+ + ...+..+.+|.-+|..|.+. -..|++++.|-|+||||.+ + .++.+..
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 1111 1224789999999999999 4 46788889999999999764 3589999999999999987 3 4788888
Q ss_pred ccccCEEEEE---eCCCEEEEEcCCCCeeeee
Q 003217 496 AHSSPVIKMA---VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 gH~~~V~sla---~dg~~l~S~S~DgtIrlWd 524 (838)
-|+.-|..+. +++.++++.+.|..+.+|+
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeec
Confidence 9999999886 3789999999999999998
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=5.6e-20 Score=191.81 Aligned_cols=272 Identities=16% Similarity=0.308 Sum_probs=169.8
Q ss_pred CCceeeecC-CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee
Q 003217 182 APFKESVKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (838)
Q Consensus 182 ~p~~~~~~g-~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (838)
.||...+.| ...|.|++-+|.. ..++||+.||.|++||+... .+..+|++|.+.|..|+++. +.++|++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------~~~~~f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------ECIRTFKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------hhhheeecccCceeeEEecc-cceEEec
Confidence 455555544 7789999999976 78999999999999999986 67889999999999999998 6689999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~ 339 (838)
+|+|||.|..+.. ..-++.. +..+.++..+ ..+...+++ ...|.|||.
T Consensus 127 dDKtvK~wk~~~~-p~~tilg----------~s~~~gIdh~--------------------~~~~~FaTc-Ge~i~IWD~ 174 (433)
T KOG0268|consen 127 DDKTVKQWKIDGP-PLHTILG----------KSVYLGIDHH--------------------RKNSVFATC-GEQIDIWDE 174 (433)
T ss_pred CCcceeeeeccCC-cceeeec----------cccccccccc--------------------ccccccccc-Cceeeeccc
Confidence 9999999997541 1111100 0000011000 011111111 134556666
Q ss_pred cCccEEEEEe-cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-C-ccc
Q 003217 340 RTRELLKVFN-IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-G-GFG 416 (838)
Q Consensus 340 ~tg~~l~~l~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g-~~~ 416 (838)
....+++.++ +-..+ .++.+.+..... +. ..++..++..+... + .+.
T Consensus 175 ~R~~Pv~smswG~Dti-~svkfNpvETsI---------La--------------------s~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSI-SSVKFNPVETSI---------LA--------------------SCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred ccCCccceeecCCCce-eEEecCCCcchh---------ee--------------------eeccCCceEEEecccCCccc
Confidence 5555544432 11111 001111100000 00 00000111111100 0 000
Q ss_pred --cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-C
Q 003217 417 --DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 417 --~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g 488 (838)
--.-+...++++|++. +.+|++|..+..+|+ . ...++.+.+|.++|+++.+ .|+-+++||.|.+|||+.+. +
T Consensus 225 KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 225 KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred eeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 0011234577888766 688999999999999 3 4788999999999999854 69999999999999999986 4
Q ss_pred cccccccccc---cCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 489 NLLGGWVAHS---SPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 489 ~~i~~l~gH~---~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.-.... |+ ..|.+|. .|.++++|||.|+.||+|...
T Consensus 305 ~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 305 HSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 322111 22 2478886 489999999999999999854
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=4.5e-19 Score=181.46 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=199.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------cCCCCCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL----------LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~----------~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
.+++.|.+|++||.++||||.|-.||+.|++.-. .+.......+++|-.|...|+.+.|.|... |+|||
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 8899999999999999999999999999987211 011122344678889999999999999887 78999
Q ss_pred CCCcEEEEECCCc--ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEE
Q 003217 260 EGGGIKIWPWEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFAL 336 (838)
Q Consensus 260 ~DgtIrvWd~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~l 336 (838)
.|+|||++|.... ++.++... ....++++.+.+.|..|..|.+ -+++|
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~q-----------------------------d~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQ-----------------------------DTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhh-----------------------------ccceeeeEeecCCCceEEEecCCCceeE
Confidence 9999999998531 11121111 1346888999999999999887 58999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC-
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG- 413 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g- 413 (838)
||+.|-+|.-.-.++.| ...++..+.++..+..-++|+.||.+++|. .+
T Consensus 243 Ydv~T~QcfvsanPd~q----------------------------ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQ----------------------------HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred EeccceeEeeecCcccc----------------------------cccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence 99999887433222211 112233455555566667888899888886 12
Q ss_pred ---cccc--CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCC--ccE----EEEEE-cCCEEEEEee-C
Q 003217 414 ---GFGD--DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--FAV----QCLCT-FGSQIWVGYM-N 478 (838)
Q Consensus 414 ---~~~~--~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~--~~V----~sls~-dG~~LasGs~-D 478 (838)
++.. ....|.+..|+.+|+ |+|.+.|.+|++|.+ +|+++++++|-. +.+ .++.- ...++..-.+ .
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas 374 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS 374 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc
Confidence 2221 334677788999998 889999999999999 899999998631 111 12222 2346666553 6
Q ss_pred CeEEEEeCCC-cccccc-cccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 479 GIVQVLDLEG-NLLGGW-VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 479 gtIrlWD~~g-~~i~~l-~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
+.+.-||... ..+..| .||++.|..|.. .+-.++++|.|-.+|.|--
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 7888999873 223322 489999999874 4557899999999999973
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.2e-17 Score=162.53 Aligned_cols=294 Identities=19% Similarity=0.270 Sum_probs=204.3
Q ss_pred CCccccCceeEEEEecCC-EEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCC-CC----ceeeecCCCCeEEE
Q 003217 126 LRETQIGCFLRTIVCTEE-QLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGT-AP----FKESVKGVSSVMCM 197 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~-~l~~-g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~-~p----~~~~~~g~~~V~~l 197 (838)
|.++| .+|+++.+.. .||+ |+ ..++||........ .|++.+.. .| ++..-|+.++|+|.
T Consensus 29 l~dsq---airav~fhp~g~lyavgsnskt~ric~yp~l~~----------~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 29 LEDSQ---AIRAVAFHPAGGLYAVGSNSKTFRICAYPALID----------LRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred ecchh---heeeEEecCCCceEEeccCCceEEEEccccccC----------cccccccccCCCeEEeeeccccCccEEEE
Confidence 44555 6888888744 8887 54 45999975432111 23332221 12 33333448899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC----C-EEEee-CCCcEEEEECCC
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG----D-LWSGS-EGGGIKIWPWEA 271 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG----~-L~SgS-~DgtIrvWd~~~ 271 (838)
+|+|+|++|++||.|.+|++-..+...| +....-+.|.-|.+.|..|+|-.+. . |+||+ .|..|.+=|..+
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999999999999987765421 1122335567799999999997652 3 56654 466666656544
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
++....+.. | ++.+..+.+- .+..+++++ |+||+.||++-..++.++.-
T Consensus 173 g~~~~a~sg-------------------h----------tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 173 GQGFHALSG-------------------H----------TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred CCcceeecC-------------------C----------cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccC
Confidence 432222221 2 3445555554 467777777 78999999987777665421
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
+- ++. | + ....|.++++.|.
T Consensus 223 ~~-----------------------------~~~--------------------g---------l--essavaav~vdps 242 (350)
T KOG0641|consen 223 DF-----------------------------HDG--------------------G---------L--ESSAVAAVAVDPS 242 (350)
T ss_pred cc-----------------------------cCC--------------------C---------c--ccceeEEEEECCC
Confidence 10 000 0 0 1234667889999
Q ss_pred Cc-EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEEc-C-CEEEEEeeCCeEEEEeCCCcc-----cccccccccCE
Q 003217 431 GM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF-G-SQIWVGYMNGIVQVLDLEGNL-----LGGWVAHSSPV 501 (838)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~d-G-~~LasGs~DgtIrlWD~~g~~-----i~~l~gH~~~V 501 (838)
|+ |++|..|....++|+. |+.++.|..|+..|.|+-+. | -++.+|+.|..|+|=|+.|.+ +.+...|.+.+
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 98 6899999999999995 68899999999999999775 3 499999999999999998764 44555788888
Q ss_pred EEEEeCCC--EEEEEcCCCCeeeeec
Q 003217 502 IKMAVGAG--YIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~dg~--~l~S~S~DgtIrlWdl 525 (838)
..+.++++ .++|.|.|+|+.+|-+
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEEecCccceeeeccCcceEEEecc
Confidence 88888776 4679999999999975
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.5e-18 Score=173.81 Aligned_cols=266 Identities=15% Similarity=0.201 Sum_probs=196.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee--CCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS--~DgtIrvW 267 (838)
.+.|.++.|+++|..|++.+.|.+++++|...+ +...++.-++-.|..+.|..... +.-+| .|.+||.-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 568999999999999999999999999999998 56777777778899999987765 54444 59999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++.+.+..--+. +| ...|..+..+|.+..+.|++ |++|++||+++.+|..
T Consensus 86 sl~dNkylRYF~-------------------GH----------~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 86 SLHDNKYLRYFP-------------------GH----------KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EeecCceEEEcC-------------------CC----------CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 997755432222 23 34577788888888888887 7899999999888866
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEec----cCccc-----
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA----KGGFG----- 416 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~----~g~~~----- 416 (838)
.+...+... .+|.|.+....++... .+..... +|.|.
T Consensus 137 ~l~~~~~pi---------------------------------~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 137 LLNLSGRPI---------------------------------AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCcc---------------------------------eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 554322211 1111222211222222 1211111 23322
Q ss_pred -cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccE----E-EEEEcCCEEEEEeeCCeEEEEeCC-
Q 003217 417 -DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----Q-CLCTFGSQIWVGYMNGIVQVLDLE- 487 (838)
Q Consensus 417 -~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V----~-sls~dG~~LasGs~DgtIrlWD~~- 487 (838)
........+.|||||+ |+.++..+.+.+-|. +|..++++.+|.+.- . ++.|||++|.+|+.||+|.+|+++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 2345567799999998 677777888999999 999999999876542 3 346899999999999999999998
Q ss_pred Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 488 GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 488 g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
|+....+.+ |...+.++.+.+++..=++.+..+-+|-..
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 888889988 788999999999988878888889999643
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-18 Score=194.04 Aligned_cols=262 Identities=21% Similarity=0.259 Sum_probs=196.5
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+.|.++-...|++|+..+..... . ..++ ...|+++.++++|+.|+.|..+|.|.+||..
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~------------------l-~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTE------------------L-CSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEE------------------e-EecC-CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 445666778899999986543110 0 1122 5689999999999999999999999999998
Q ss_pred CCccCCCCCcceeEEecc-ccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 222 ARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
.. +.+..+.+ |...|.++++.. ..+.+|+.|+.|..+|+...+..... +.+|
T Consensus 248 ~~--------k~~~~~~~~h~~rvg~laW~~-~~lssGsr~~~I~~~dvR~~~~~~~~------------------~~~H 300 (484)
T KOG0305|consen 248 EQ--------KKTRTLRGSHASRVGSLAWNS-SVLSSGSRDGKILNHDVRISQHVVST------------------LQGH 300 (484)
T ss_pred hc--------cccccccCCcCceeEEEeccC-ceEEEecCCCcEEEEEEecchhhhhh------------------hhcc
Confidence 75 56777888 999999999983 33679999999999999664332220 1112
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
..+|.-+...+++..+++++ |..+.|||..+.+++..+.
T Consensus 301 ----------~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~------------------------------ 340 (484)
T KOG0305|consen 301 ----------RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT------------------------------ 340 (484)
T ss_pred ----------cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe------------------------------
Confidence 34566677778888888887 6789999985544433332
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC--CCcEEEEE--CCCeEEEEcC-CCCeeeE
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGG--ANGLLLQWDP-NGNRLQD 454 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~--dg~l~Sgs--~DgtIrlWD~-~g~~l~t 454 (838)
+|...|.+++++| .|.||+|+ .|++|++||+ +|.+++.
T Consensus 341 -------------------------------------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 341 -------------------------------------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred -------------------------------------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 2333445566655 35577765 6999999999 7888887
Q ss_pred eecCCccEEEEEEc--CCEEEE--EeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 455 FQYLPFAVQCLCTF--GSQIWV--GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 455 l~~H~~~V~sls~d--G~~Las--Gs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
... ...|++|... .+-|++ |..+..|.||+.. -+.+..+.||+..|..++ +||+.+++|+.|.|+|+|++-.
T Consensus 384 vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 754 5679999764 333443 5578899999976 578999999999999987 6899999999999999999865
Q ss_pred C
Q 003217 528 P 528 (838)
Q Consensus 528 ~ 528 (838)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=1.9e-19 Score=179.67 Aligned_cols=239 Identities=17% Similarity=0.272 Sum_probs=180.9
Q ss_pred CCccccCceeEEEEecCCEEEE-------------ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCC
Q 003217 126 LRETQIGCFLRTIVCTEEQLWA-------------GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS 192 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~l~~-------------g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~ 192 (838)
||.-++|..+-++.++..-+|. +.|=+-+|||.-++...- .| ++ .-
T Consensus 43 lr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh-----------------sf-~h---kh 101 (334)
T KOG0278|consen 43 LRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-----------------SF-EH---KH 101 (334)
T ss_pred hccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-----------------hh-hh---hh
Confidence 6777778888888777666664 346688999976543221 12 22 33
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
-|.+++|+.|...|.||+.+..+|++|++... .+...+.||++.|..+.|....+ ++|.+.|++||+||..+
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 79999999999999999999999999998763 45567889999999999987655 88889999999999988
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecC
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+....++.. ...|+++-.++++..|..+-..+|+.||+.+-.+++.+...
T Consensus 175 gt~v~sL~~------------------------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 175 GTEVQSLEF------------------------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred CcEEEEEec------------------------------CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc
Confidence 654332211 33566677777777776666678999999987777765432
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
-.+ ++...+|+.
T Consensus 225 ~nV--------------------------------------------------------------------~SASL~P~k 236 (334)
T KOG0278|consen 225 CNV--------------------------------------------------------------------ESASLHPKK 236 (334)
T ss_pred ccc--------------------------------------------------------------------ccccccCCC
Confidence 221 111123333
Q ss_pred -cEEEEECCCeEEEEcC-CCCeeeEe-ecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccc
Q 003217 432 -MIWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 432 -~l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~ 490 (838)
.++.|+.|..+..+|- +|+.+..+ ++|.++|.||. +||..-++||.||+||||.+. ++.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 3678889999999999 89888886 89999999985 589999999999999999976 543
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=4.9e-18 Score=171.26 Aligned_cols=270 Identities=17% Similarity=0.172 Sum_probs=188.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..|++-+.++.+|.+|+|+++|.++-||-...| +.+-+..||+++|+++..+-+.+ |+|||.|.++||||+
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 779999999999999999999999999998776 67889999999999999999887 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC------cEEEEeccCcc
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL------SFALWDARTRE 343 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~------tI~lWD~~tg~ 343 (838)
++++....... ...|+.+-++.++..+..+.+. .|.++|++...
T Consensus 82 ~tGk~la~~k~------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 82 ETGKQLATWKT------------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCCcEEEEeec------------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 98765433221 2245666666666666555542 46677776321
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC-c----cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-G----FG 416 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-~----~~ 416 (838)
. +. ..++.-.++... +.........+.+..++.|+.+|-...+. .| . -.
T Consensus 132 ~--------~~-------------~s~ep~~kI~t~---~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 132 S--------DI-------------DSEEPYLKIPTP---DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred h--------hh-------------cccCceEEecCC---ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 0 00 000000011110 11111112223345667888888655554 22 1 23
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-----
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE----- 487 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~----- 487 (838)
.|...|..+.+++|.+ .++||.|.+-++||. +-++++++.. ..+|++.+. .-.+++.|+-. .--|++
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGq---eA~dVTTT~~r 263 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQ---EAMDVTTTSTR 263 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCc---eeeeeeeeccc
Confidence 4778899999999988 799999999999999 6799999976 568887654 34566655422 222321
Q ss_pred -Cc------------ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 488 -GN------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 488 -g~------------~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
|+ .+...+||-++|++|+ ++|+.-+||+.||.||+--+.
T Consensus 264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 32 3678899999999998 578889999999999996543
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3e-18 Score=185.31 Aligned_cols=225 Identities=20% Similarity=0.265 Sum_probs=170.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~ 269 (838)
..|+++.|-.||++|+.|..-|.|+++|+.+. ..++.+++|+.+|..+.|+|++. |++||+|+.+|+||+
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 36889999999999999999999999997663 34567899999999999999875 689999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCc-cEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg-~~l~ 346 (838)
.+..-... +.+| +..|++.+..+... .|++|+ |++|++||+++. ..+.
T Consensus 141 s~a~v~~~-------------------l~~h----------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 141 STAYVQAE-------------------LSGH----------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred CCcEEEEE-------------------ecCC----------cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 76432111 1223 55688888776544 788888 578999999764 2222
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
.| .|..+|+.+.
T Consensus 192 el--------------------------------------------------------------------nhg~pVe~vl 203 (487)
T KOG0310|consen 192 EL--------------------------------------------------------------------NHGCPVESVL 203 (487)
T ss_pred Ee--------------------------------------------------------------------cCCCceeeEE
Confidence 22 1233455555
Q ss_pred EcCCCc-EEEEECCCeEEEEcC-CC-CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 427 TSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 427 ~S~dg~-l~Sgs~DgtIrlWD~-~g-~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
+-|.|. +++++.+ .||+||+ +| +.+..+..|...|+|+.. ++.+|+||+.|+.|+++|++ -+.+.+|+- .++
T Consensus 204 ~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~p 281 (487)
T KOG0310|consen 204 ALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGP 281 (487)
T ss_pred EcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccc
Confidence 556654 6777755 5999999 46 445555559999999965 67899999999999999966 477888854 578
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeee
Q 003217 501 VIKMA--VGAGYIFTLANHGGIRGW 523 (838)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrlW 523 (838)
|.+++ +|++.++-|-.||.+-+=
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eeeEEecCCCceEEEecccceeeee
Confidence 88876 577889999999987654
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-18 Score=174.36 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=166.9
Q ss_pred eee-cCCCCCccc---cCceeEEEEe---cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC
Q 003217 119 LEV-KPHPLRETQ---IGCFLRTIVC---TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (838)
Q Consensus 119 ~~~-~~~~~~~~~---~~~~~~~l~~---~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 190 (838)
+|+ +|..++|.+ +...+..++= .++++++ +.||++|+||+.... .+..-|+++
T Consensus 43 le~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------~Pi~~~kEH--- 103 (311)
T KOG0277|consen 43 LEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------KPIHKFKEH--- 103 (311)
T ss_pred EecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------cchhHHHhh---
Confidence 444 344555533 2334444442 2557776 679999999964321 122235553
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (838)
...|+++.+++ +++.+.++|.||+||+|+...+ +.+++|.||..-|...+|+|.- . ++|+|.|+++|+|
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred hhheEEeccccccceeEEeeccCCceEeecCCCC--------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence 67999999987 4567888999999999999876 6788999999999999999964 4 6899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCcc-E
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE-L 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~-~ 344 (838)
|+....+.+.+.. | +.++.+.-.+. +...|++++ |+.|+.||++.-+ +
T Consensus 176 dvr~~gk~~~i~a-------------------h----------~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 176 DVRSPGKFMSIEA-------------------H----------NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred EecCCCceeEEEe-------------------c----------cceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 9865322222111 1 22333333333 344566666 6899999997522 1
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+-+| .|+.-+ |+.
T Consensus 227 l~eL---------------------------------------------------~gh~~A----------------VRk 239 (311)
T KOG0277|consen 227 LFEL---------------------------------------------------NGHGLA----------------VRK 239 (311)
T ss_pred ceee---------------------------------------------------cCCceE----------------EEE
Confidence 1111 122222 333
Q ss_pred EEEcCCC--cEEEEECCCeEEEEcCC-C-CeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeC
Q 003217 425 LTTSIDG--MIWTGGANGLLLQWDPN-G-NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 425 la~S~dg--~l~Sgs~DgtIrlWD~~-g-~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~ 486 (838)
|.+||-- .|+|++-|-|+|+||.. + .++.+...|+.-|..+.. ++.++|+.+-|+.++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4455543 47899999999999993 4 678888899998887743 6789999999999999985
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2e-18 Score=185.38 Aligned_cols=239 Identities=21% Similarity=0.294 Sum_probs=173.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC------------CCCCcceeEEeccccccEEEEEEecCCC-EEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD------------SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS 257 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~------------~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S 257 (838)
.-+|.||+++|+++++++++.||+|.-|++.++... ...+++. ..++|...|.+++.|+||+ |+|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~--~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE--SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc--ccccccceeEEEEEcCCCcEEEe
Confidence 668999999999999999999999999999887421 0011111 1148999999999999999 899
Q ss_pred eeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEE
Q 003217 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (838)
Q Consensus 258 gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~l 336 (838)
|+.|..|-||+.++.+....+. +| ...|..|++-.....+++++ |.+|++
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~-------------------gh----------r~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFK-------------------GH----------RGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cCCCceEEEecCcccchhhccc-------------------cc----------ccceeeeeeecCccceeeeecCCceEE
Confidence 9999999999998765332221 22 44677778766666666666 789999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
|++..-..+.+|-+|. +++
T Consensus 271 w~~~~~s~vetlyGHq---------------------------------------------------d~v---------- 289 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQ---------------------------------------------------DGV---------- 289 (479)
T ss_pred EehhHhHHHHHHhCCc---------------------------------------------------cce----------
Confidence 9987655544443332 222
Q ss_pred cCCCceEEEEEcCCCcEEE-EECCCeEEEEcCCCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 417 DDNRRTEALTTSIDGMIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~l~S-gs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
.++....-+++++ |+.|+|+++|++.-+-.-.|.+|.+.+.|+++ +..++++|+.+|.|.||++. -+++.+
T Consensus 290 ------~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 290 ------LGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ------eeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 1222222234554 55899999999965555568899999999987 67799999999999999975 333221
Q ss_pred c------------cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 494 W------------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 494 l------------~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
. ..|..+|++|+. ..+.++|||.+|.||+|.+..
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 1 122348999984 567899999999999999764
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=8.2e-18 Score=180.68 Aligned_cols=275 Identities=19% Similarity=0.320 Sum_probs=181.0
Q ss_pred EEEecCCEEEE-ecCCCEEEEeCCCCccccc--cccccccCCCCCCCCCCceee--ecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESE--SDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 137 ~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~--~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+..++...+. +.+++|-=|++.+...... .+... ..+++. |++.+ .| ...++|+++++||++|+||+.
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-~k~~~~----~~k~~r~~h-~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-LKSHGN----PLKESRKGH-VKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchh-hhhccC----CCCcccccc-cceeEEEEEcCCCcEEEecCC
Confidence 33444556665 6699999999976653311 00000 011222 22222 34 678999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|..|.||+..+. +.+..|.||+++|.+++|=... +|+|+|.|++||+|+++.....-++..+
T Consensus 223 d~~v~Iw~~~t~--------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH--------- 285 (479)
T KOG0299|consen 223 DRHVQIWDCDTL--------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH--------- 285 (479)
T ss_pred CceEEEecCccc--------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC---------
Confidence 999999999997 6778899999999999997643 4999999999999999653322222221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
. ..|..+-.. ...++++++ |.|++||++.. +..-+|.
T Consensus 286 ------------q--------d~v~~IdaL-~reR~vtVGgrDrT~rlwKi~e-esqlifr------------------- 324 (479)
T KOG0299|consen 286 ------------Q--------DGVLGIDAL-SRERCVTVGGRDRTVRLWKIPE-ESQLIFR------------------- 324 (479)
T ss_pred ------------c--------cceeeechh-cccceEEeccccceeEEEeccc-cceeeee-------------------
Confidence 1 112222222 233444443 68999999832 1111111
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP- 447 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~- 447 (838)
++...+.+++|-.+..++|||+||+|.||++
T Consensus 325 ------------------------------------------------g~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 325 ------------------------------------------------GGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred ------------------------------------------------CCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 1122345666666777999999999999999
Q ss_pred CCCeeeEee-c-----------CCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-C----cccccccccccCEEEEEe--
Q 003217 448 NGNRLQDFQ-Y-----------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-G----NLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 448 ~g~~l~tl~-~-----------H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g----~~i~~l~gH~~~V~sla~-- 506 (838)
+.+.+.+.. . +..||++|+.- ...+++|+-+|.||||-++ | +++..+. -.+.|++|++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEcc
Confidence 666665543 1 22389999763 4599999999999999987 4 2455555 5678999884
Q ss_pred CCCEEEE-EcCCCCeeeee
Q 003217 507 GAGYIFT-LANHGGIRGWN 524 (838)
Q Consensus 507 dg~~l~S-~S~DgtIrlWd 524 (838)
+|+.++. .+....+=.|-
T Consensus 436 sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 436 SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCEEEEecccccccceee
Confidence 7775554 44444444454
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=5.1e-18 Score=198.68 Aligned_cols=304 Identities=19% Similarity=0.234 Sum_probs=211.9
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCccC----CCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc
Q 003217 191 VSSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLD----SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs--~DGtIrvWd~~~g~~~----~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (838)
...|+++.++|+|..++||+ .||.+++|+.+.-..+ ..+.-+++.+..-|.+.|+|+.|++||+ |++||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 66799999999999999999 9999999997642100 0011234456678999999999999998 899999999
Q ss_pred EEEEECCCc-ce-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc
Q 003217 264 IKIWPWEAI-EK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (838)
Q Consensus 264 IrvWd~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~ 340 (838)
|-||..... .. .+.-+......... +....+++| .++|..+.-++++..+++++ |.+|.|||.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~w---k~~~~l~~H----------~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESW---KVVSILRGH----------DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EEEeeecccCCccccccccccccccee---eEEEEEecC----------CCccceeccCCCccEEEEecccceEEEEccc
Confidence 999998631 00 01000111111100 112234444 67888888888888999888 7899999999
Q ss_pred CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCC
Q 003217 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
|.++++++.+|..
T Consensus 160 tF~~~~vl~~H~s------------------------------------------------------------------- 172 (942)
T KOG0973|consen 160 TFELLKVLRGHQS------------------------------------------------------------------- 172 (942)
T ss_pred cceeeeeeecccc-------------------------------------------------------------------
Confidence 9988887765532
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCcc------EE--EEEEcCCEEEEEee----CCeEEEEeC
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA------VQ--CLCTFGSQIWVGYM----NGIVQVLDL 486 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~------V~--sls~dG~~LasGs~----DgtIrlWD~ 486 (838)
.|-.+.|+|-|+ ++|-+.|++|++|++ +-.+.+.++.+... .. +-+|||.+|++.-. -.++.|.+.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 122355777776 899999999999997 54566666654431 22 23679999999764 458889888
Q ss_pred C-CcccccccccccCEEEEEeCC-------C------------EEEEEcCCCCeeeeecCCCCCCchhhhhhhhcccccc
Q 003217 487 E-GNLLGGWVAHSSPVIKMAVGA-------G------------YIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLY 546 (838)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~dg-------~------------~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y 546 (838)
. .+.-..|.||..+|..+.+++ + .+++||.|++|-||....+.|+--+ +++...
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~---- 326 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNK---- 326 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcC----
Confidence 6 467788999999999987521 1 4679999999999999888886543 222111
Q ss_pred ccccceeeEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCc
Q 003217 547 TRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (838)
Q Consensus 547 ~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~ 595 (838)
.|.-..|+-.+..- |.+ ..|--|++|.|||-+++
T Consensus 327 ------SI~DmsWspdG~~L--------fac-S~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 327 ------SIVDMSWSPDGFSL--------FAC-SLDGTVALIHFEEKELG 360 (942)
T ss_pred ------ceeeeeEcCCCCeE--------EEE-ecCCeEEEEEcchHHhC
Confidence 26667887665322 121 12345899999997654
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=3.5e-17 Score=164.79 Aligned_cols=251 Identities=16% Similarity=0.200 Sum_probs=175.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
.+.|.+|++..+|..|++|+.|+++++|+++.. ++.......||.+.|-.++++|... ++++|.|++||+||
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 568999999999999999999999999999875 1222344689999999999998653 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
...+++...... ...-..+.-++++..++.++ ++.|...|+++.+....
T Consensus 94 ~r~~k~~~~i~~------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 94 IRSGKCTARIET------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eccCcEEEEeec------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 987665432211 11112233445566555555 56788899988777654
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE---Eec---cCccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR---VAA---KGGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~---v~~---~g~~~~~~~~ 421 (838)
.+..-.. + ..+ +... +. +=|. -...|... +.. -..+..|...
T Consensus 144 ~~~~~e~-n--e~~---------------w~~~--nd----~Ffl--------t~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 144 EQFKFEV-N--EIS---------------WNNS--ND----LFFL--------TNGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred hccccee-e--eee---------------ecCC--CC----EEEE--------ecCCceEEEEeccccccccccccCCcc
Confidence 4321111 0 000 1100 00 0011 11111111 111 1234456667
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
..++.|+|+|+ +++|+.|..+-|||+ +--|++.+.-+.-+|..|++ ||++||+||+|..|-|=+++ |..+... -
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~ 270 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-P 270 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-e
Confidence 77899999998 899999999999999 67899999999999998876 79999999999999999987 6554444 3
Q ss_pred cccCEEEEEeCCCE
Q 003217 497 HSSPVIKMAVGAGY 510 (838)
Q Consensus 497 H~~~V~sla~dg~~ 510 (838)
|.++-.+|++++++
T Consensus 271 ~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKR 284 (313)
T ss_pred ccCCceeEEecCCC
Confidence 67788899998874
No 90
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=7e-18 Score=178.52 Aligned_cols=264 Identities=12% Similarity=0.061 Sum_probs=170.5
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
++.|.+ +.|.+.-+|++..-....- -++-..| ..+|.-+.||||.++|++++.|..+++||+
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CeeEeeccCCceEEEEEEecCcceee----------------eeeeecc-cCceEEEEECCCCCeEEecCchHheeeccC
Confidence 445554 4599999998742111100 0111123 789999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcce-eeecCCCceeeeEEEEeeceeec
Q 003217 221 NARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.+|. ....+ .+|...|.|+++.|||. +++||.|++|..||++.... .....
T Consensus 299 ~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------------ 352 (519)
T KOG0293|consen 299 DTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------------------ 352 (519)
T ss_pred Ccch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc------------------
Confidence 9983 33332 35678999999999997 99999999999999976321 11000
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCccccc----ccce
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM----EDEF 372 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~----~~~~ 372 (838)
..+.+..++..++|..|... .|..|++++..+...++..+.+ +...+..++.+..... +.++
T Consensus 353 ------------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 353 ------------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred ------------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCee
Confidence 02457778877777766554 4788999999887665433222 2222333332221110 1111
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEE-EEcCCCcEEEEECCCeEEEEcC-CCC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL-TTSIDGMIWTGGANGLLLQWDP-NGN 450 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al-a~S~dg~l~Sgs~DgtIrlWD~-~g~ 450 (838)
.+|..... +. ...+.|+..+-+. |.+. .--.+..++|||+|+.|++|+. +|+
T Consensus 420 ~LWDl~e~---~l----------v~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 420 HLWDLEEN---KL----------VRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred EEeecchh---hH----------HHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 11111100 00 0112222222111 1111 1122345899999999999999 899
Q ss_pred eeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC
Q 003217 451 RLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~ 487 (838)
.+.++.||...|+||+.+ ..++|||+.|||||||-..
T Consensus 474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999999999864 4599999999999999764
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=2.6e-18 Score=185.41 Aligned_cols=259 Identities=12% Similarity=0.127 Sum_probs=167.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
|.|+.|+|||+-.- ..| . ..| .+| ..+|..+.|+++|..+.|+|+|+.||+||.++|
T Consensus 234 gmD~~vklW~vy~~--~~~------------l--rtf--~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---- 290 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDD--RRC------------L--RTF--KGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---- 290 (503)
T ss_pred CCCceEEEEEEecC--cce------------e--hhh--hcc-hhhhhhhhccccCCeeeeeecceeeeeeccccc----
Confidence 56999999998441 122 1 113 234 789999999999999999999999999999998
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
++...|.- ...++++.|.||+. +++|..|+.|+.||..+++-...+. +++
T Consensus 291 ----~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hL-------------------- 342 (503)
T KOG0282|consen 291 ----QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHL-------------------- 342 (503)
T ss_pred ----eEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhh--------------------
Confidence 45544421 34678999999994 6799999999999998754221111 111
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCce-EEeeecccCcccccccceeeEEEecCCCC
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI-ENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
..+..+.+-+.+.+..+++ ++++++|+....-.++...-..+. .-.+...+.......+.+.
T Consensus 343 ------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d---------- 406 (503)
T KOG0282|consen 343 ------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD---------- 406 (503)
T ss_pred ------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC----------
Confidence 1233344445666666666 478999999887765532211111 0011122211111111100
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCC--ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCC
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~--~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
..+.+-+...-.+.+.+..|.+|.. .-..+.|||||. |+||.+||.+.+||- +.+.+..+..|.
T Consensus 407 ------------N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 407 ------------NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred ------------ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 0001111111112222334445432 233578999998 899999999999999 678999999999
Q ss_pred ccEEEEEEc---CCEEEEEeeCCeEEEEe
Q 003217 460 FAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 460 ~~V~sls~d---G~~LasGs~DgtIrlWD 485 (838)
.++..+... ...+|+++-||.|++||
T Consensus 475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecccCceeEecC
Confidence 998888663 35999999999999997
No 92
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.2e-18 Score=182.53 Aligned_cols=208 Identities=15% Similarity=0.294 Sum_probs=159.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++-+|.|.+|+-|+-.|.|.+|.+.+| ..+..|.+|-.+|+++.|+.||. |+|||.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 568999999999999999999999999999998 67777899999999999999998 789999999999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
... ++...+ . +-++++.|.
T Consensus 153 ~~l---------------------------------------------v~a~~~--------~--------~~~p~~~f~ 171 (476)
T KOG0646|consen 153 TDL---------------------------------------------VSADND--------H--------SVKPLHIFS 171 (476)
T ss_pred Eee---------------------------------------------cccccC--------C--------Cccceeeec
Confidence 220 000000 0 011122222
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc-
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS- 428 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S- 428 (838)
.|. -.|..+.+.
T Consensus 172 ~Ht-------------------------------------------------------------------lsITDl~ig~ 184 (476)
T KOG0646|consen 172 DHT-------------------------------------------------------------------LSITDLQIGS 184 (476)
T ss_pred cCc-------------------------------------------------------------------ceeEEEEecC
Confidence 221 111122211
Q ss_pred --CCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC----------------
Q 003217 429 --IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE---------------- 487 (838)
Q Consensus 429 --~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~---------------- 487 (838)
.+++|+|+|.|.+||+||+ .|..+.++.- ...+++++.| ++++++|+++|.|.+-++.
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 2457999999999999999 6888888764 5678888776 6799999999999988742
Q ss_pred -Cccccccccccc--CEEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 488 -GNLLGGWVAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 488 -g~~i~~l~gH~~--~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
+..+..+.||.+ .|++++ .||+.|+||+.||.|++||+.+...+..+.
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 124678999999 999987 699999999999999999998765555443
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=157.26 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=167.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-c----CC--CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL-L----DS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~-~----~~--~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg 262 (838)
+..|.+++|.|.|++.+.||...++|+-....-. . .. ..+......-+.|++.|.+.++||+|+ |++||.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 6689999999999999999999999987532210 0 00 011112223467899999999999999 58999999
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc----CCCCEEEEeCCC--cEEE
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAGFL--SFAL 336 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~V~s~s~~--tI~l 336 (838)
+||+-......+..+.+.-+-. .+.+.++.+++- ..+..+++++-+ .|.+
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~n------------------------mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFN------------------------MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred eEEEEecccccccccCcceeee------------------------ecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 9999877543332221110000 112334444442 134456665533 4555
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
=|-.+|+.++.+.+|. ..+
T Consensus 168 tdc~~g~~~~a~sght---------------------------------------------------ghi---------- 186 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHT---------------------------------------------------GHI---------- 186 (350)
T ss_pred eecCCCCcceeecCCc---------------------------------------------------ccE----------
Confidence 5666665544443332 111
Q ss_pred cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec-------CCccEEEEEEc--CCEEEEEeeCCeEEEEeC
Q 003217 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~-------H~~~V~sls~d--G~~LasGs~DgtIrlWD~ 486 (838)
.++..=.+-+++||+.|.|||+||+ -..|+.++.. .++.|.++++| |+.|++|-.|..-.|||+
T Consensus 187 ------lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 187 ------LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred ------EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 1111111235789999999999999 5678877642 34678887764 889999999999999999
Q ss_pred C-CcccccccccccCEEEEEeCC--CEEEEEcCCCCeeeeecC
Q 003217 487 E-GNLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrlWdl~ 526 (838)
. |+.++.+..|+..|.++.+.+ .|++++|.|..||+=|++
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 8 578999999999999998654 589999999999998864
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.5e-17 Score=178.26 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=164.6
Q ss_pred ecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 003217 140 CTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMC 217 (838)
Q Consensus 140 ~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrv 217 (838)
.++..|.+|. .|.|+|+|..+..-.. .+.. | +.||..+.|+|+ ++++++|+.|+.+++
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR-----------------~~~a--h-~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILR-----------------QLYA--H-QAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHH-----------------HHhh--c-cCceeEEEecccCCeEEEecCCCceEEE
Confidence 3455555655 5799999965411111 1222 3 779999999985 578888999999999
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCc-ceeeecCCCceeeeEEEEeece
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~-~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
||+.+. .....+.||++.|.+.+++|-.. ++|||.||+||+||+.+. ....++.
T Consensus 138 ~d~s~a--------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--------------- 194 (487)
T KOG0310|consen 138 WDLSTA--------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--------------- 194 (487)
T ss_pred EEcCCc--------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---------------
Confidence 999996 44668999999999999999644 689999999999998663 2222221
Q ss_pred eecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
| --.|..+++-++|..|++++...|++||+.+|..+-+.
T Consensus 195 -----h----------g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~-------------------------- 233 (487)
T KOG0310|consen 195 -----H----------GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS-------------------------- 233 (487)
T ss_pred -----C----------CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh--------------------------
Confidence 1 11345566667788999999899999999876432110
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
+..|.+.|+++.+..+++ |+||+-|+.||++|. +-+.+
T Consensus 234 ----------------------------------------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 234 ----------------------------------------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred ----------------------------------------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 123667778888777766 999999999999997 56788
Q ss_pred eEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 453 QDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 453 ~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
..+.. .++|.+++ ++++.++.|-.+|.+-+-+..
T Consensus 274 ~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 274 HSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred Eeeec-ccceeeEEecCCCceEEEecccceeeeehhh
Confidence 77754 77899875 467899999999998877543
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=9.2e-17 Score=171.26 Aligned_cols=268 Identities=15% Similarity=0.158 Sum_probs=206.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...+.++...+....+.+|+.|.++.++|...+ +.+.+|+||+..|+++.|+++.. +.++|.|..||||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 446777877776678999999999999999886 56778999999999999999987 679999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeCCCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s~~tI~lWD~~tg~~l~~l 348 (838)
........... | ...|+.+...+.+..+. +..+++...-|+++|.++.+.
T Consensus 291 ~~~s~~~~~~~-------------------h----------~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 291 PLSSEPTSSRP-------------------H----------EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred ccccCcccccc-------------------c----------cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 54322111111 1 23455555555555444 444678889999999887665
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~v 422 (838)
..... +....+..|.+++.....|+.+++.++|. ...|.+|...|
T Consensus 342 s~~~s-----------------------------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 342 SDETS-----------------------------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eeccc-----------------------------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 43211 11233456788887778899999999986 24688899999
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCC-ccEEEEEEc--CCEEEEEeeCCeEEEEeCC---Ccccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTF--GSQIWVGYMNGIVQVLDLE---GNLLGGW 494 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~d--G~~LasGs~DgtIrlWD~~---g~~i~~l 494 (838)
.++.|+.+|+ |++++.|+.|++||+ +-+..+++.... ..|.++++| |++|++++.|=.|.+++-. .+++..+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 9999999999 899999999999999 667777776533 368888885 8899999888777777743 4578889
Q ss_pred cccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
.-|++..+.+.+ +.++++++|-|..+|+..
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEee
Confidence 999999999886 567999999999988764
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=1.2e-16 Score=163.82 Aligned_cols=256 Identities=19% Similarity=0.266 Sum_probs=155.5
Q ss_pred eeEEEEecC--CEEE-Eec-CCCEEEEeCCCC-ccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCTE--EQLW-AGG-ENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~~--~~l~-~g~-d~~vrvWd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.+..|+++. ..|. +|+ |++||+|+++.. ... +.+ ..-+ .+||+|++|+.||..+++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka---~~~~-~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKA---QQSH-DGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCccc---------------chh---hhcc-CCCeEEEEEccCCceEEe
Confidence 344555553 3333 544 999999999652 111 111 1112 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+-|+.+++||+.++ +..+...|.++|.++.|-+... |+|||+|+|||.||+.......++...+
T Consensus 90 g~~Dk~~k~wDL~S~---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--- 157 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASG---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--- 157 (347)
T ss_pred eccCCceEEEEccCC---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---
Confidence 999999999999996 4677889999999999987543 7899999999999996533222221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
++.+.+-... .|.+..++.|.+++++.+... +... .++.
T Consensus 158 -----------------------------RvYa~Dv~~pm~vVata~r~i~vynL~n~~te--~k~~--------~SpL- 197 (347)
T KOG0647|consen 158 -----------------------------RVYAADVLYPMAVVATAERHIAVYNLENPPTE--FKRI--------ESPL- 197 (347)
T ss_pred -----------------------------eeeehhccCceeEEEecCCcEEEEEcCCCcch--hhhh--------cCcc-
Confidence 1111111111 223334578889998764321 1100 0000
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEE---ec---cC--ccc---------cCCCceEEEEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV---AA---KG--GFG---------DDNRRTEALTT 427 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v---~~---~g--~~~---------~~~~~v~ala~ 427 (838)
+ -...+++++++....++|+-.|-.-+ +. +. +|. .+...|.+|+|
T Consensus 198 --------k----------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 198 --------K----------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred --------c----------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 0 00113334433333344443332211 11 00 111 12345667888
Q ss_pred cCC-CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC-EEEEEeeC
Q 003217 428 SID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMN 478 (838)
Q Consensus 428 S~d-g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~-~LasGs~D 478 (838)
.|. |.|++++.||+...||- .-..|++...|..+|+|.++ +|. +.++.+.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 875 66899999999999998 45678888889999998876 566 34444444
No 97
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=2.1e-17 Score=183.15 Aligned_cols=302 Identities=15% Similarity=0.179 Sum_probs=185.7
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.|+.+ +|+.|.++|........ | ...|+. ..| .+.|+.+.+-|....|++++-|.+||+||+.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~-------------e-e~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRL-------------E-ERQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred eEEEecCCCceeeecchhhhcch-------------h-hhhhcccccc-cceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 34444 58899999986533210 1 111222 234 8899999999977889999999999999999
Q ss_pred CCccCCCCCcceeE--EeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcce-eeec---CCCceeeeEEEEeec
Q 003217 222 ARLLDSDDGFGEVL--SWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK-ALSL---KPEERHTAALIVERS 293 (838)
Q Consensus 222 ~g~~~~~~~~~~~~--~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~-~~~~---~~~~~~~~~~~~~~s 293 (838)
+. +... .+.||++.|.+++|.++.. +++|+.||.|.|||+.-... .+.. .....+..+- ..-.
T Consensus 131 ~s--------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpsk 201 (720)
T KOG0321|consen 131 TS--------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSK 201 (720)
T ss_pred cc--------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCc
Confidence 86 3333 4889999999999999876 67999999999999853210 0000 0000000000 0000
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (838)
...-+.+........+ .+.|+.+++- +...|++++ |++|++||+++.......+.-+ . +
T Consensus 202 p~~kr~~k~kA~s~ti-~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~--------------~-- 262 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTI-FSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-S--------------D-- 262 (720)
T ss_pred hhhccccccccccCce-eeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCc-c--------------c--
Confidence 0000000000000001 2236667765 455666665 7899999998765422111000 0 0
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCCC-
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG- 449 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~g- 449 (838)
+ +... .+ ....+..|..+.-| +|...+.|++|.+|++.+
T Consensus 263 -~---~~t~--sk---------------------------------rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 263 -K---YPTH--SK---------------------------------RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred -C---ccCc--cc---------------------------------ceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 0 0000 00 00112233333333 466666799999999954
Q ss_pred --CeeeEeecCCc---cEE-EEEEcCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEeCC---CEEEEEcCCC
Q 003217 450 --NRLQDFQYLPF---AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGA---GYIFTLANHG 518 (838)
Q Consensus 450 --~~l~tl~~H~~---~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg---~~l~S~S~Dg 518 (838)
..+..+.+|.. .|. ++++|+.+|++|+.|....+|.+. ......+.||+-.|.++.+.+ .-+++++.|-
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 34455555443 232 347899999999999999999987 346788999999999998643 3588999999
Q ss_pred CeeeeecCC
Q 003217 519 GIRGWNVTS 527 (838)
Q Consensus 519 tIrlWdl~s 527 (838)
++++|++..
T Consensus 384 ~~kiW~l~~ 392 (720)
T KOG0321|consen 384 RVKIWRLSN 392 (720)
T ss_pred ceEEEeccC
Confidence 999999844
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=7.1e-16 Score=172.07 Aligned_cols=383 Identities=12% Similarity=0.109 Sum_probs=227.2
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccc-cccccccCC--CCCCCCCCceeeecC-CCCeEEEEEcCCCCEEEEEeCC
Q 003217 138 IVCTEEQLWA-GGENGLRVWNLKELYDESE-SDSVSVSKS--KGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 138 l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~-~~~~~~~~~--~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~LaSGs~D 212 (838)
|....+.++- ..++.||+++-++....+. -.+-.+|.- .+-+...-+.+.-.+ -.-..++.||+....|..-..|
T Consensus 266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 3444554443 5799999999877644321 000011110 000100001111111 1124578899999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec------------CCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS------------YGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~------------dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
..+.|||+..- +.......+.-|...|++|---| .+-+.|+|.|+|||||+++....--.+..
T Consensus 346 hSlYvWDvrD~-----~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 346 HSLYVWDVRDV-----NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred ceEEEEecccc-----ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 99999999874 22234556677999998885544 24478999999999999976221111000
Q ss_pred --CceeeeE-EEEeeceeecccc----eeccce-eeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecC
Q 003217 281 --EERHTAA-LIVERSYIDLRSH----LSVNGF-SSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (838)
Q Consensus 281 --~~~~~~~-~~~~~s~~~l~~~----~~~~~~-~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (838)
-...... ...+.....+... ....++ ..-+...+++++.++++..+++|.. ++++++|+..-+.+.....|
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0000000 0000000000000 000000 0012346899999999999988874 68999999887766666666
Q ss_pred CceEEeeecccC-------cccccccceeeEEEec----------CCCCcceeeeeEeecCc--ceeeecCCc--EEEEe
Q 003217 352 GQIENRVDMSLL-------PDFAMEDEFKTKIVTS----------SKKDKAQSSFGFFQRSR--NAIMGAADA--VRRVA 410 (838)
Q Consensus 352 ~~~~~~~~~s~~-------~~~~~~~~~~~~~~s~----------~~~~~~~~s~~~~~~~~--~~~~g~~~~--v~~v~ 410 (838)
...+-.+.++.- +..+ .+..+.++.. ..+...++++.|..++. +.+.-.+|- .+|+.
T Consensus 501 esEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhcc--CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 543333333221 1111 0000111110 11123445666666552 333322332 22333
Q ss_pred c---cC-ccccCC-----CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec---CCccEEEE--EEcCCEEEE
Q 003217 411 A---KG-GFGDDN-----RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY---LPFAVQCL--CTFGSQIWV 474 (838)
Q Consensus 411 ~---~g-~~~~~~-----~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~---H~~~V~sl--s~dG~~Las 474 (838)
. .| .|..+. ..+..+++.|.-. +++++.|..|||+|+ +|+..++|++ |.+..--+ .+.|-||++
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at 658 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT 658 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE
Confidence 2 12 233332 2456788888765 799999999999999 7999999986 43333333 456889999
Q ss_pred EeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 475 GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 475 Gs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+.|.+|.++|.- |+|++.+.||+..|+.+.+ |-+.|+|+|.||.|-+|.+..
T Consensus 659 Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999965 9999999999999999986 778999999999999999743
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.76 E-value=4.8e-18 Score=180.16 Aligned_cols=257 Identities=17% Similarity=0.211 Sum_probs=183.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|..+.|-++...|++|+.|..|++|+...+. .....+|.|-.++|+++.|.++++ ++++|.|+.+++|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 6788899998888999999999999999998762 235667888889999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
......-++. +| +.+|.++-+--....|.+++ |.+|++||+..+.|.++.
T Consensus 249 d~~r~~~TLs-------------------GH----------tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 249 DSLRLRHTLS-------------------GH----------TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred cchhhhhhhc-------------------cc----------ccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 7633211221 22 34454444443444477777 689999999998887654
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
-+-.+. .+|+.+
T Consensus 300 l~~S~c--------------------------------------------------------------------nDI~~~ 311 (459)
T KOG0288|consen 300 LPGSQC--------------------------------------------------------------------NDIVCS 311 (459)
T ss_pred cccccc--------------------------------------------------------------------cceEec
Confidence 221110 011111
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCCCc-cccccc------ccc
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-LLGGWV------AHS 498 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g~-~i~~l~------gH~ 498 (838)
.-.++||..|++||+||. .+.+++....|. .|++|. ++|..|.+.+.|.++.+.|+.+. ..+++. +|.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 113678999999999998 778888888766 899884 57889999999999999999864 334333 344
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCC
Q 003217 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (838)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (838)
-.-..+.+|+.|++.||.||.|.||++.+... . ..+.... ....|+...||-.+
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-E----~~l~~s~------s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-E----KVLSLST------SNAAITSLSWNPSG 443 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceE-E----EEeccCC------CCcceEEEEEcCCC
Confidence 11122347999999999999999999876432 1 1111111 11148888999864
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=9.8e-16 Score=165.02 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=164.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|+.|++||+.+...... + .+...+.+++++|+|+.+ ++++.|+.|++||..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~-----------------~----~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--- 63 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT-----------------F----PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--- 63 (300)
T ss_pred cCCCEEEEEECCCCceEEE-----------------E----ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5589999999876432211 1 112346789999999876 57788999999999886
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+....+..|.. +..++|+|+|+ ++ +++.|+.|++||+.+......+..
T Consensus 64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------ 113 (300)
T TIGR03866 64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------------------------ 113 (300)
T ss_pred -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------------------------
Confidence 44455555544 46789999998 54 566799999999966322111100
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
......++.++++..++.+.. ..+.+||..+++++..+...
T Consensus 114 ------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------- 156 (300)
T TIGR03866 114 ------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------------------------------- 156 (300)
T ss_pred ------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------------------------
Confidence 011234566667777666553 24667788766543221100
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE-ECCCeEEEEcC-CCCeeeEeecCC
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg-s~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
..+..++++++|+ ++.+ ..++.|++||+ ++++++.+..+.
T Consensus 157 -------------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 157 -------------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred -------------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 0112466788887 5444 45899999999 677777665332
Q ss_pred -----ccE--EE--EEEcCCEEEEE-eeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEE-cCCCCeeeeec
Q 003217 460 -----FAV--QC--LCTFGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANHGGIRGWNV 525 (838)
Q Consensus 460 -----~~V--~s--ls~dG~~LasG-s~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~-S~DgtIrlWdl 525 (838)
..+ .. ++++|++++++ +.++.|.+||++ ++.+..+ .+...+.+++ ++|++|+++ +.+++|++||+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 111 12 35678876654 456789999987 5554443 3445677777 478888876 56999999998
Q ss_pred CCCCC
Q 003217 526 TSPGP 530 (838)
Q Consensus 526 ~s~~~ 530 (838)
.+...
T Consensus 279 ~~~~~ 283 (300)
T TIGR03866 279 AALKV 283 (300)
T ss_pred CCCcE
Confidence 76444
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=4.4e-16 Score=182.63 Aligned_cols=295 Identities=18% Similarity=0.158 Sum_probs=195.7
Q ss_pred eeEEEEecCC--EEEE-e--cCCCEEEEeCCCCccccccccccccCCCCCCC-CCCceeeecCCCCeEEEEEcCCCCEEE
Q 003217 134 FLRTIVCTEE--QLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDG-TAPFKESVKGVSSVMCMVGDEASGVVW 207 (838)
Q Consensus 134 ~~~~l~~~~~--~l~~-g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~~~V~~la~s~dg~~La 207 (838)
.+.+|..+.+ .+.+ | .|+++++|+.+....... -.++. ......+..|.++|.|+.|+|||++||
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~---------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE---------EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhh---------hhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 3667776655 4444 3 589999999865322110 00111 011112222488999999999999999
Q ss_pred EEeCCCcEEEEECCCC----ccCC------CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceee
Q 003217 208 SGHRDGRIMCWKMNAR----LLDS------DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g----~~~~------~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~ 276 (838)
+||.|+.|.+|..... .+.+ --..+....+.||.+-|..++++|++. |+|+|-|++|-||+..+.+..-
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 9999999999998731 1111 013455678899999999999999998 7899999999999987652211
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceE
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIE 355 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~ 355 (838)
. +++| .+.|+-+..++-|..+++-+ |++|++|++.+=.+.+....+-+
T Consensus 166 v-------------------l~~H----------~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-- 214 (942)
T KOG0973|consen 166 V-------------------LRGH----------QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-- 214 (942)
T ss_pred e-------------------eecc----------cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--
Confidence 1 2233 45677788888888888877 57999999654333222211100
Q ss_pred EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EE
Q 003217 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW 434 (838)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~ 434 (838)
.. + ..-...-+.+||||. |+
T Consensus 215 -----------------------~~--------------------~----------------~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 215 -----------------------ES--------------------P----------------LTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred -----------------------hC--------------------C----------------CcceeeecccCCCcCeec
Confidence 00 0 000112355778887 44
Q ss_pred EEEC-C---CeEEEEcCC-CCeeeEeecCCccEEEEEEc----------C-----C----EEEEEeeCCeEEEEeCC-Cc
Q 003217 435 TGGA-N---GLLLQWDPN-GNRLQDFQYLPFAVQCLCTF----------G-----S----QIWVGYMNGIVQVLDLE-GN 489 (838)
Q Consensus 435 Sgs~-D---gtIrlWD~~-g~~l~tl~~H~~~V~sls~d----------G-----~----~LasGs~DgtIrlWD~~-g~ 489 (838)
+..+ + .++.|-+-. -++-..|.||..++.++.+. | . .+|+|+.|++|-||... -+
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 4332 2 267777763 36677888999999988542 1 1 57899999999999985 23
Q ss_pred c-cccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 490 L-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 490 ~-i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+ .....--...|..+.+ ||-.|+-+|.||+|.+..++.
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 3 2222334567888885 688999999999999998753
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-15 Score=172.34 Aligned_cols=349 Identities=18% Similarity=0.277 Sum_probs=213.5
Q ss_pred ceeEEEEec----CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 133 CFLRTIVCT----EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~----~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.++.+|... +.-+.-+++|.+++||+.+...... |.+ . ...|+|+.-+|.-..+|.
T Consensus 160 ~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~-----------------f~~--~-~s~IT~ieqsPaLDVVai 219 (910)
T KOG1539|consen 160 DFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYT-----------------FQE--F-FSRITAIEQSPALDVVAI 219 (910)
T ss_pred CceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEE-----------------ecc--c-ccceeEeccCCcceEEEE
Confidence 345555432 3333346799999999987654321 222 2 568999999999899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|..+|+|.++++..+ +.+.+|+--.+.|++++|.-||. |++|..-|.+-+||++.........
T Consensus 220 G~~~G~ViifNlK~d--------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~------- 284 (910)
T KOG1539|consen 220 GLENGTVIIFNLKFD--------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR------- 284 (910)
T ss_pred eccCceEEEEEcccC--------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-------
Confidence 999999999999987 67888876679999999999997 7899999999999997643221110
Q ss_pred EEEEeeceeecccc-eeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEecc--Cc--cEEEEEecCCceEEeeec-
Q 003217 287 ALIVERSYIDLRSH-LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR--TR--ELLKVFNIDGQIENRVDM- 360 (838)
Q Consensus 287 ~~~~~~s~~~l~~~-~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~--tg--~~l~~l~~~~~~~~~~~~- 360 (838)
.+| +.+.+...++...|...+.. |+.+++|=-. .| ..++.=.+|.+.-..+.+
T Consensus 285 -----------nah~~sv~~~~fl~~epVl~ta~~----------DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 285 -----------NAHYGSVTGATFLPGEPVLVTAGA----------DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred -----------ccccCCcccceecCCCceEeeccC----------CCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 011 22222222233333322222 3444444222 22 112222222221100000
Q ss_pred --------ccCccc-----cc-----ccceee-EEEecCC----------CCcceeeeeEeec-C---cceeeecCCcE-
Q 003217 361 --------SLLPDF-----AM-----EDEFKT-KIVTSSK----------KDKAQSSFGFFQR-S---RNAIMGAADAV- 406 (838)
Q Consensus 361 --------s~~~~~-----~~-----~~~~~~-~~~s~~~----------~~~~~~s~~~~~~-~---~~~~~g~~~~v- 406 (838)
+...+. ++ .++.-- ......+ +...+..+++... . .++++.+.+-.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 000111 10 000000 0000000 0000111111110 0 13344443321
Q ss_pred EEEec-----cCc-------cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe---ecCCccEEEEEEcC
Q 003217 407 RRVAA-----KGG-------FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFAVQCLCTFG 469 (838)
Q Consensus 407 ~~v~~-----~g~-------~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl---~~H~~~V~sls~dG 469 (838)
.+.|. .|. |......+.+++.++-|. .+.|+..|+|-++++ .|-....| ..|..+|+.++.|+
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 22222 122 222346788899999998 567888999999999 78777777 47999999999986
Q ss_pred C--EEEEEeeCCeEEEEeCCCc------------------------------------------ccccccccccCEEEEE
Q 003217 470 S--QIWVGYMNGIVQVLDLEGN------------------------------------------LLGGWVAHSSPVIKMA 505 (838)
Q Consensus 470 ~--~LasGs~DgtIrlWD~~g~------------------------------------------~i~~l~gH~~~V~sla 505 (838)
. .+++++.+|.++.||..++ ..+.|.||++.|+++.
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT 583 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence 4 6999999999999995421 1246789999999987
Q ss_pred --eCCCEEEEEcCCCCeeeeecCCCCCCchhhhh
Q 003217 506 --VGAGYIFTLANHGGIRGWNVTSPGPLDSILCK 537 (838)
Q Consensus 506 --~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~ 537 (838)
+||++|+|++-|++||+||+-+...+|.+.-.
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 58999999999999999999998888887643
No 103
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-15 Score=168.19 Aligned_cols=279 Identities=17% Similarity=0.250 Sum_probs=206.9
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC--CCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~V~~la~s~dg~~LaS 208 (838)
.++++|.. .++|.+| +|+.|-+||+....... + .++| .+.|-.++|. +++.|+|
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-----------------~---vi~g~~drsIE~L~W~-e~~RLFS 85 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-----------------P---VIHGPEDRSIESLAWA-EGGRLFS 85 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceee-----------------E---EEecCCCCceeeEEEc-cCCeEEe
Confidence 47788876 3477775 58999999997643321 1 1222 6689999999 6778999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
.+-+|+|.-||+.++ +.......-.++|++|+.+|.++ ++.|++||.+...+...+. +++.
T Consensus 86 ~g~sg~i~EwDl~~l--------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~--I~~~-------- 147 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTL--------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK--ITYK-------- 147 (691)
T ss_pred ecCCceEEEEecccC--------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce--EEEE--------
Confidence 999999999999997 56666777789999999999887 7889999977666664322 2211
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
+.+- ...+.+.++...+++.+|++|+. +.|++||+.+++.++.... +.
T Consensus 148 ----r~l~-------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~------------ 196 (691)
T KOG2048|consen 148 ----RSLM-------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QL------------ 196 (691)
T ss_pred ----eecc-------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cc------------
Confidence 0000 01346778888888888998885 5599999999876542211 00
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEc
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD 446 (838)
...++ +..-.|.+|.+-.|++|++|..-|+|++||
T Consensus 197 -----------d~l~k----------------------------------~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 197 -----------DRLSK----------------------------------REPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred -----------ccccc----------------------------------CCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 00000 011224567777899999999999999999
Q ss_pred C-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCc-----ccccccccccCEEEEEeCCCEEEEEcCCC
Q 003217 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN-----LLGGWVAHSSPVIKMAVGAGYIFTLANHG 518 (838)
Q Consensus 447 ~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~-----~i~~l~gH~~~V~sla~dg~~l~S~S~Dg 518 (838)
. .|..++.+..|...|.|++. ++.++.+++.|+.|-.+-.+++ ......+|...|.+++.-+..++||+.|.
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~ 311 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF 311 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence 9 79999999999999999976 4579999999999999987643 23445688899999997777999999999
Q ss_pred CeeeeecCC
Q 003217 519 GIRGWNVTS 527 (838)
Q Consensus 519 tIrlWdl~s 527 (838)
++-+=..+.
T Consensus 312 ~l~i~~s~~ 320 (691)
T KOG2048|consen 312 TLAICSSRE 320 (691)
T ss_pred EEEEccccc
Confidence 988766554
No 104
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.3e-16 Score=158.05 Aligned_cols=256 Identities=14% Similarity=0.212 Sum_probs=164.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (838)
..-|.|+.||.-|+.+||+|.|++++|||...+ ...+.+...|++|.+.|..|.+-+ .|+ ++++|.|+|++||
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCC----CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 567999999999999999999999999997654 355677888999999999999865 488 6899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
.=.. +...-+. ..+... .++.+- .+.|..+.+.+ -|-++++++ |+++|||++-.---
T Consensus 89 EE~~--~~~~~~~-~~Wv~~----ttl~Ds-------------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 89 EEQE--KSEEAHG-RRWVRR----TTLVDS-------------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred eecc--ccccccc-ceeEEE----EEeecC-------------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 7521 1111110 111110 011111 23455555544 455777766 78899998743111
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+...+.. .+++..+ .... .+....-+
T Consensus 149 Ls~W~Lq------------------~Ei~~~~-~pp~-----------------------------------~~~~~~~C 174 (361)
T KOG2445|consen 149 LSQWTLQ------------------HEIQNVI-DPPG-----------------------------------KNKQPCFC 174 (361)
T ss_pred cccchhh------------------hhhhhcc-CCcc-----------------------------------cccCcceE
Confidence 1111000 0000000 0000 00001111
Q ss_pred EEEcC----CCcEEEEECC-----CeEEEEcC--CC---CeeeEeecCCccEEEEEEc---CC---EEEEEeeCCeEEEE
Q 003217 425 LTTSI----DGMIWTGGAN-----GLLLQWDP--NG---NRLQDFQYLPFAVQCLCTF---GS---QIWVGYMNGIVQVL 484 (838)
Q Consensus 425 la~S~----dg~l~Sgs~D-----gtIrlWD~--~g---~~l~tl~~H~~~V~sls~d---G~---~LasGs~DgtIrlW 484 (838)
|.+.+ ...|+.|+.+ +.++||.- .+ ..+.++.+|+.+|+.|++. |+ .||+++.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 22221 1246666654 36888976 34 2456677999999998652 54 899999999 9999
Q ss_pred eCCC---------------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 485 DLEG---------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 485 D~~g---------------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
.++. +.+..+..|.+.|+.+.+ -|..|.|.|.||.||+|..
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 8652 135568899999999986 5888999999999999983
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.8e-17 Score=167.68 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=173.5
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
..|+|.-+|++++. +....+.||+..|+.++...... +.|+|.|.|.+||.++++.+..++.+
T Consensus 125 srivssFk~~t~~~--------------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-- 188 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF--------------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-- 188 (481)
T ss_pred chheeeecCCceeE--------------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc--
Confidence 35777788888532 44566889999999998876444 56999999999999999887766543
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
| .+.|.++.+.+.+..+.+++ |.+..||...-.-. .....
T Consensus 189 -----------------H----------~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~-----vP~~~------- 229 (481)
T KOG0300|consen 189 -----------------H----------TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE-----VPSNN------- 229 (481)
T ss_pred -----------------c----------ccceeeEEeccccceEEEccCCcchHHHHHhhcCc-----CCCCC-------
Confidence 2 44577788888888887776 67888997532110 00000
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANG 440 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~Dg 440 (838)
...+.+.+++.. -+ ..... +.+ + -.......+|+. .-.|.+|...|.+..+-..| +++++|-|.
T Consensus 230 a~~~hSsEeE~e---~s-De~~~------d~d-~---~~~sD~~tiRvP-l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 230 APSDHSSEEEEE---HS-DEHNR------DTD-S---SEKSDGHTIRVP-LMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred CCCCCCchhhhh---cc-ccccc------ccc-c---ccccCCceeeee-eeeeeccccceEehhhhcCcceeeeeeccc
Confidence 000001111100 00 00000 000 0 000011122222 11245566666665554445 499999999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe-CCCEEEEE
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIFTL 514 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~-dg~~l~S~ 514 (838)
|..+||+ +|+.++.++||....+-++. .-+.+++.+.|.+.||||.. -..+..|+||++.|+++.+ -+..++|+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSg 374 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSG 374 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeec
Confidence 9999999 79999999999998886654 34577778889999999986 3458899999999999886 46789999
Q ss_pred cCCCCeeeeecCC-CCCCchh
Q 003217 515 ANHGGIRGWNVTS-PGPLDSI 534 (838)
Q Consensus 515 S~DgtIrlWdl~s-~~~~d~~ 534 (838)
|.|.|||+||+++ ..|+..+
T Consensus 375 SDDrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred CCCceEEEeeeccccCcceee
Confidence 9999999999876 4455544
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-16 Score=176.86 Aligned_cols=221 Identities=21% Similarity=0.277 Sum_probs=163.9
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+..|.+|. ++.|.|||..+...... +.. .| ..-|.|+++. +..+.+|+.||.|..+|+
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~-----------------~~~-~h-~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRT-----------------LRG-SH-ASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehhhcccccc-----------------ccC-Cc-CceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 44666664 78999999876543321 111 13 6679999997 588999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 299 (838)
.... .....+++|+..|..+.+++|+. |+||+.|+.+.|||....+..+.+..
T Consensus 288 R~~~-------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~------------------- 341 (484)
T KOG0305|consen 288 RISQ-------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE------------------- 341 (484)
T ss_pred ecch-------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-------------------
Confidence 8762 12224899999999999999998 89999999999999854433333322
Q ss_pred ceeccceeeeecCCeEEEEEcC-CCCEEEEeC---CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeE
Q 003217 300 HLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
| ...|+.++..+ ....|++|+ |++|++||..+|+.+......+|
T Consensus 342 H----------~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---------------------- 389 (484)
T KOG0305|consen 342 H----------TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---------------------- 389 (484)
T ss_pred c----------ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc----------------------
Confidence 1 44677777765 556777776 57899999999988655432222
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEE--EECCCeEEEEcC-CCCe
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANGLLLQWDP-NGNR 451 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~S--gs~DgtIrlWD~-~g~~ 451 (838)
|..|.+++... |++ |..++.|.||+. +-+.
T Consensus 390 ----------------------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 390 ----------------------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred ----------------------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 22344444442 443 335678999999 7789
Q ss_pred eeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 452 LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 452 l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
+..+.+|+.+|..++ +||..|++|+.|.|+++|++=
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 999999999999874 689999999999999999964
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=5.9e-17 Score=166.07 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=170.4
Q ss_pred ceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCc-cee--eecCCCceeeeEEEEeeceeecccceecccee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAI-EKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~-~~~--~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 307 (838)
.+...+..|++++.+.+||+||.| +|||.|..|||.|++.. .+. ...... ...+...+ ...+..|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPv---IRTlYDH------- 171 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPV---IRTLYDH------- 171 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCce---Eeehhhc-------
Confidence 345567889999999999999995 79999999999999741 111 000000 00000000 1112222
Q ss_pred eeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcce
Q 003217 308 SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQ 386 (838)
Q Consensus 308 ~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~ 386 (838)
..+|.+|.+.+....+++++ |++|+++|...-..-+.|
T Consensus 172 ---~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~-------------------------------------- 210 (430)
T KOG0640|consen 172 ---VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF-------------------------------------- 210 (430)
T ss_pred ---cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH--------------------------------------
Confidence 56788999998888888887 689999997521110000
Q ss_pred eeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe---ecCCcc
Q 003217 387 SSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFA 461 (838)
Q Consensus 387 ~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl---~~H~~~ 461 (838)
....+...|.++.|.|.|. |+.|..-.++++||+ +-+|.-.- .+|++.
T Consensus 211 ---------------------------K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 211 ---------------------------KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred ---------------------------HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 0112345577888989887 677776679999999 56775433 369999
Q ss_pred EEEEEE--cCCEEEEEeeCCeEEEEe-CCCccccccc-ccccC-EEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCchh
Q 003217 462 VQCLCT--FGSQIWVGYMNGIVQVLD-LEGNLLGGWV-AHSSP-VIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 462 V~sls~--dG~~LasGs~DgtIrlWD-~~g~~i~~l~-gH~~~-V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
|+++.. .|+.-++|+.||.|+||| +.++|+.++. +|.+. |.+.. .++++++|.+.|.+|++|.+.+..++...
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 999954 588889999999999999 4588988875 78764 55554 48999999999999999998876654322
Q ss_pred h------------hhhhhccccccccccceeeEEEEEEeC
Q 003217 535 L------------CKELAGKEFLYTRMENLKILAGTWNVG 562 (838)
Q Consensus 535 ~------------~~~l~~r~~~y~~~~~~~i~~~twNv~ 562 (838)
. +..|+..+.+-.-..+....+++||.-
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 1 122333344333344455778888874
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=2e-16 Score=170.72 Aligned_cols=268 Identities=16% Similarity=0.228 Sum_probs=176.4
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee--eecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003217 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (838)
Q Consensus 137 ~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~g~~~V~~la~s~dg~~LaSGs~DGt 214 (838)
+|....+.+|+|.-++|+|||+.... +..|... -+...+-+.++.+.|||+.|.+|++-.+
T Consensus 426 tIS~~trhVyTgGkgcVKVWdis~pg-----------------~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 426 TISNPTRHVYTGGKGCVKVWDISQPG-----------------NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred EecCCcceeEecCCCeEEEeeccCCC-----------------CCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 44444669999999999999995421 1111100 0111567888899999999999999999
Q ss_pred EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 215 IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
+-|||+.... .+.+ ..+..-.-+-.+++.+||.++ +++..||.|+|||+.......
T Consensus 489 lsiWDLAapT----prik--aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr----------------- 545 (705)
T KOG0639|consen 489 LSIWDLAAPT----PRIK--AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR----------------- 545 (705)
T ss_pred eeeeeccCCC----cchh--hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee-----------------
Confidence 9999998852 1111 122222335678899999995 699999999999996532211
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
++.+| +..+.|+..+++|.++|+|+ |.+|+-||++++..+....-..|+
T Consensus 546 --qfqGh----------tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI------------------ 595 (705)
T KOG0639|consen 546 --QFQGH----------TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI------------------ 595 (705)
T ss_pred --cccCC----------CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh------------------
Confidence 22233 44567888889999999999 789999999987654321111111
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCe
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNR 451 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~ 451 (838)
-+|...|.+- ++.|-.++.+.+-..++..
T Consensus 596 --------------------------------------------------fSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 596 --------------------------------------------------FSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred --------------------------------------------------eecccCCCccceeeecccCcEEEEecCCcc
Confidence 1222334444 5666666666666666655
Q ss_pred eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE--EEeCCCEEEEEcCCCCeeeeec
Q 003217 452 LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 452 l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s--la~dg~~l~S~S~DgtIrlWdl 525 (838)
...+..|.+-|.+|.+ -|+++++.+.|.-+..|..- |.-+-..+- ++.|++ |..|.++|+|||.|+...++.+
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5666677777777754 57888887888888888764 543333322 344554 4567788888888877666653
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.6e-15 Score=153.05 Aligned_cols=268 Identities=14% Similarity=0.132 Sum_probs=178.6
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC-CCCeEEEEEcCCCCEEE
Q 003217 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVW 207 (838)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~La 207 (838)
+..+.+|..+ +..|.+ ++|.+|++||..++..... ++. .-.|-++.|-.....+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------eecccccccEEEEecCCceEE
Confidence 3456677765 335555 4577999999977654321 110 11345555655555566
Q ss_pred EEeC--CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 208 SGHR--DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 208 SGs~--DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
-++. |.+||.-++.+. +.++-|.||...|++|..+|-+. ++|+|.|++||+||+....+...+..
T Consensus 73 ~sStk~d~tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---- 140 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---- 140 (311)
T ss_pred EccCCCCCceEEEEeecC--------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----
Confidence 6665 889999999987 78899999999999999999776 78999999999999975443322111
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCc--cEEEEEecCCceEEeeecc
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR--ELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s 361 (838)
..--+.|+++.|-..+.+.. ..|+|+|++.- .+-.+|....
T Consensus 141 ---------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--------- 184 (311)
T KOG1446|consen 141 ---------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--------- 184 (311)
T ss_pred ---------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---------
Confidence 01113456777766666654 38999999752 2222222110
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE-Eec-cCc----cccCCC---ceEEEEEcCCCc
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR-VAA-KGG----FGDDNR---RTEALTTSIDGM 432 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~-v~~-~g~----~~~~~~---~v~ala~S~dg~ 432 (838)
. ....-..+.|+++++.+++.+..+... +.. .|+ |..+.. -.....|+||++
T Consensus 185 -------~------------~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 185 -------N------------DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred -------C------------CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 0 011112356777777777766655433 332 332 322221 123456899999
Q ss_pred -EEEEECCCeEEEEcC-CCCeeeEeec-CCccEEEEEEcCCEEEEEeeCCeEEEEeCC
Q 003217 433 -IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~tl~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (838)
+++|+.||+|.+|++ +|+.+..+.+ +..++.|+-+..++..-.+.+..+-.|=.+
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 788889999999999 7999888888 788999999888877777788889999654
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=156.94 Aligned_cols=287 Identities=16% Similarity=0.134 Sum_probs=168.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-EeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-SWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~-~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
...|+||+|+.||+.|+|.+.|++||+|++..-. ....+.++ .+. -+--+.|+|+||-+ +++.-...+++++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~---~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE---NKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhh---hhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 7799999999999999999999999999987521 01111111 111 12346789999987 4677788899999
Q ss_pred ECCCcce-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEE
Q 003217 268 PWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (838)
Q Consensus 268 d~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l 345 (838)
.+...+. .++++. +-+.++ + +.....-++..+-....+..|.+++ +.+|.|||++ |+.+
T Consensus 161 k~~K~~dG~~~~~~--------------v~~D~~-~---f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHF--------------VHIDNL-E---FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EeeecccCCCCccc--------------cccccc-c---cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 8753211 111110 000000 0 0000012233333333444566666 5679999999 8888
Q ss_pred EEEecCCceEEeeecccCcccc----cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 346 KVFNIDGQIENRVDMSLLPDFA----MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~----~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
.+.............++...+. +..++++|-.--.++ |+-..+.|+ -.+.+|...
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd------------------G~fqev~rv---f~LkGH~sa 280 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD------------------GTFQEVKRV---FSLKGHQSA 280 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC------------------cchhhhhhh---heeccchhh
Confidence 7654321111112233322221 112222111000000 000011111 124568888
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcCC-----CC---eeeEee-----cCCccEE-EEEEcCCEEEEEeeCCeEEEEeC
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDPN-----GN---RLQDFQ-----YLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~~-----g~---~l~tl~-----~H~~~V~-sls~dG~~LasGs~DgtIrlWD~ 486 (838)
|.+++||++.+ +++.|.||++|+||.+ ++ .++++. ...+++. .+++.|+.||. +...+|+++..
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~s 359 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFAS 359 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEc
Confidence 99999999986 9999999999999973 33 233331 1123443 56788988877 55778999998
Q ss_pred C-Ccccccc-cccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 487 E-GNLLGGW-VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 487 ~-g~~i~~l-~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+ |+-.-.+ ..|...|.+|++ +|++++|++ |.-+|+..
T Consensus 360 e~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 7 6644444 579999999985 789999987 56677754
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4e-15 Score=153.46 Aligned_cols=242 Identities=15% Similarity=0.165 Sum_probs=145.5
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
.|.++-|+++|+||....... ..+.+..|+++++|-+ -..+++|+-||.||+.|++++
T Consensus 28 LLvssWDgslrlYdv~~~~l~---------------------~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANSLK---------------------LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred EEEEeccCcEEEEeccchhhh---------------------hheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 455567999999998653211 1112277999999985 578999999999999999996
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecC-CCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccccee
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 302 (838)
....+..|..+|.+|.+++. |.++|||+|++||+||............
T Consensus 86 ---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---------------------- 134 (323)
T KOG1036|consen 86 ---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---------------------- 134 (323)
T ss_pred ---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc----------------------
Confidence 34556789999999999974 5589999999999999854111111000
Q ss_pred ccceeeeecCCeEEEEEcCCCCEEEE-eCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCC
Q 003217 303 VNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (838)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~V~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (838)
..+|.++.. .+.++.. +.+..+.+||+++-..--.-. .... +.
T Consensus 135 --------~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~l------------------ky------- 178 (323)
T KOG1036|consen 135 --------GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSL------------------KY------- 178 (323)
T ss_pred --------CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc-cccc------------------ee-------
Confidence 123333333 3445544 557789999998743210000 0000 00
Q ss_pred CCcceeeeeEeecCcceeeecCCcEEEEec---c-----C--ccc---------cCCCceEEEEEcCC-CcEEEEECCCe
Q 003217 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAA---K-----G--GFG---------DDNRRTEALTTSID-GMIWTGGANGL 441 (838)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---~-----g--~~~---------~~~~~v~ala~S~d-g~l~Sgs~Dgt 441 (838)
...++.+.|+..--..++-+|-..+.. . . .|. ....+|.+++|+|- |+++||+.||.
T Consensus 179 ---qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 179 ---QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred ---EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence 000122222111112222222111111 0 0 011 11236777888775 55888888888
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEee
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM 477 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~ 477 (838)
|-+||+ +.+++..|......|-++++ +|..||+|++
T Consensus 256 V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 256 VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 888888 56777777666666776655 6778887763
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=1.7e-16 Score=171.19 Aligned_cols=236 Identities=19% Similarity=0.320 Sum_probs=173.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..-|.+++++...+.++||++ |.|||||+.... ...+... +....-.+.|.++.+.|||+ |++|++-.++-|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 446777888988999999987 779999997641 1111111 11223357899999999998 999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEE-EEeCCCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V-~s~s~~tI~lWD~~tg~~l~~l 348 (838)
.+-...+.... +.. ......|+.+++.... .|++++.|.|||+++..+++.|
T Consensus 495 AapTprikael---------------------tss------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 495 AAPTPRIKAEL---------------------TSS------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred cCCCcchhhhc---------------------CCc------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 76433222111 000 1223445556555443 3556889999999877665555
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+| ...+.++.++
T Consensus 548 qGh-------------------------------------------------------------------tDGascIdis 560 (705)
T KOG0639|consen 548 QGH-------------------------------------------------------------------TDGASCIDIS 560 (705)
T ss_pred cCC-------------------------------------------------------------------CCCceeEEec
Confidence 433 2223467788
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEE
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (838)
+||+ ||+|+-|++||.||+ +|+.++...- ++.|.++ ++.|.+|++|-+.+.+.|....+.....+..|.+.|.+|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence 8987 999999999999999 7876544321 4578887 578999999999999999998887777888999999998
Q ss_pred Ee--CCCEEEEEcCCCCeeeeec
Q 003217 505 AV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 505 a~--dg~~l~S~S~DgtIrlWdl 525 (838)
.+ .|++.+|.+.|+-+..|..
T Consensus 640 KFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred EecccCceeeecCchhhhhhccC
Confidence 75 7999999999999999984
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.4e-17 Score=184.88 Aligned_cols=220 Identities=21% Similarity=0.316 Sum_probs=166.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...|.|+..-..++.+++|+.|-.+-+|.+... ..+..|.||..+|-||.|+.+-. |++|+.||+||+||+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC--------chhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 446777776556789999999999999998765 45667999999999999999766 679999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+..+..-+++ +| ..++..+.+.+-+...++++ +..+++||.+...|.+.+
T Consensus 100 eeAk~vrtLt-------------------gh----------~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 100 EEAKIVRTLT-------------------GH----------LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhhhhh-------------------cc----------ccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 7643211111 11 22344555666665555555 456899998866665544
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+ |...|..+.|+
T Consensus 151 ~s-------------------------------------------------------------------~~~vv~~l~ls 163 (825)
T KOG0267|consen 151 KS-------------------------------------------------------------------HTRVVDVLRLS 163 (825)
T ss_pred cC-------------------------------------------------------------------CcceeEEEeec
Confidence 32 22334567899
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
|+|+ +++|++|.++++||. .|+.+.+|..|...|.++.++. -.+++|+.|++|++||++ -..+.....-...|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9997 689999999999999 7999999999999999987653 388899999999999998 4667777777888999
Q ss_pred EEe--CCCEEEEE
Q 003217 504 MAV--GAGYIFTL 514 (838)
Q Consensus 504 la~--dg~~l~S~ 514 (838)
+++ ++..+++|
T Consensus 244 ~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 244 LAFNPDGKIVLSG 256 (825)
T ss_pred eeecCCceeeecC
Confidence 886 44445544
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=4.8e-15 Score=152.22 Aligned_cols=257 Identities=15% Similarity=0.224 Sum_probs=163.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
...|.+|+||| ...+++.||.||+||+|+++... . -.....+.|.++|.+++|+.||. +++|+-|+.+|+||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~-~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----Q-LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCC-----c-ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 45799999999 55677799999999999998721 0 11234567999999999999997 68999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC--CEEEEeCC-CcEEEEeccCccEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAGF-LSFALWDARTRELL 345 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~V~s~s~-~tI~lWD~~tg~~l 345 (838)
+.+++... +- .| ...++.+..-... ..|.+|++ +||+.||.+...++
T Consensus 101 L~S~Q~~~-v~-------------------~H----------d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 101 LASGQVSQ-VA-------------------AH----------DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred ccCCCeee-ee-------------------ec----------ccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 98753211 10 01 2234444432222 36778884 79999999998887
Q ss_pred EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEecc-C--cccc----
Q 003217 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-G--GFGD---- 417 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~~-g--~~~~---- 417 (838)
.++......- .+.. .-.+. .++.++ ++..++.. + .+..
T Consensus 151 ~t~~LPeRvY---a~Dv--------~~pm~-----------------------vVata~r~i~vynL~n~~te~k~~~Sp 196 (347)
T KOG0647|consen 151 ATLQLPERVY---AADV--------LYPMA-----------------------VVATAERHIAVYNLENPPTEFKRIESP 196 (347)
T ss_pred eeeeccceee---ehhc--------cCcee-----------------------EEEecCCcEEEEEcCCCcchhhhhcCc
Confidence 7765443221 1000 00001 111111 11111110 0 0111
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CC--CeeeEeecCCc---------cEEEEEEc--CCEEEEEeeCCeEE
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPF---------AVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~---------~V~sls~d--G~~LasGs~DgtIr 482 (838)
-...+++|+.-+|.. .+.|+-.|.+-+-.+ .+ +.--+|+.|.. +|++|++. -..|+++++||++.
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFS 276 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEE
Confidence 122455666544443 488999998888887 44 44455666752 45566664 34889999999999
Q ss_pred EEeCC-CcccccccccccCEEEEEe--CCCEEE-EEcCC
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANH 517 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~-S~S~D 517 (838)
.||-. ..-+.+..-|..+|.+-.+ +|++++ ..|.|
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 99976 3456777889999998776 566554 55666
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.70 E-value=3.7e-16 Score=169.52 Aligned_cols=253 Identities=18% Similarity=0.236 Sum_probs=161.7
Q ss_pred eeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003217 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (838)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s 311 (838)
....+++|+..|+++++.|.|. ++|||-|.+||.||............. + ....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---------------l---------~P~E~ 214 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---------------L---------QPCET 214 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc---------------c---------Ccccc
Confidence 3456899999999999999996 999999999999999763322211100 0 00113
Q ss_pred CCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeee
Q 003217 312 SDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (838)
Q Consensus 312 ~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (838)
..++.+..+..+..|.+.+ .-..+|+|-.--+.+.+..++.-+. + ..
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~---D-----------------m~------------ 262 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR---D-----------------MY------------ 262 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh---h-----------------hh------------
Confidence 3566777776666555443 3456677744333322222211110 0 00
Q ss_pred EeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcCC--CCeeeEeec-----CCcc
Q 003217 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQY-----LPFA 461 (838)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~~--g~~l~tl~~-----H~~~ 461 (838)
.-.+|...+.+..+.|+.+ +++++.||++|+||++ .+.++.|.. -.-+
T Consensus 263 -----------------------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 263 -----------------------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred -----------------------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 0123444555666777654 8999999999999994 244444442 2224
Q ss_pred EEEEE--EcCCEEEEEeeCCeEEEEeCCCc----cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeeecCCCC-C
Q 003217 462 VQCLC--TFGSQIWVGYMNGIVQVLDLEGN----LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPG-P 530 (838)
Q Consensus 462 V~sls--~dG~~LasGs~DgtIrlWD~~g~----~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~-~ 530 (838)
+++.+ .||++||+|..||.|++||..+. ....-.+|.. .|+||.+ ||++|+|-|.|+++|+||++.+. |
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 44544 58999999999999999997532 2445578988 8999985 89999999999999999998754 4
Q ss_pred Cchhh--hhhhhccccccccccceeeEEEEEEeCCCC
Q 003217 531 LDSIL--CKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (838)
Q Consensus 531 ~d~~~--~~~l~~r~~~y~~~~~~~i~~~twNv~~~~ 565 (838)
+.... .+.+..-.+.|+....+ |+.||=-.++..
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~~~~~ 435 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAPNGMT 435 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceE-EEecccccCCCC
Confidence 43322 23344455666665554 556655555443
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.3e-16 Score=166.14 Aligned_cols=234 Identities=20% Similarity=0.280 Sum_probs=157.3
Q ss_pred eEEEEecCC--EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCTEE--QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~~~--~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.+|+.++. .|++| --+.|++|.+.++.-... + +.| -.+|+|+.|+.||.+|+|||+
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------~--~aH-YQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-----------------L--SAH-YQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----------------H--Hhh-ccceeEEEEeCCCcEEEecCC
Confidence 557776655 45556 467999999987654321 1 233 779999999999999999999
Q ss_pred CCcEEEEECCCCcc-CCCCCcceeEEeccccccEEEEEEecCC---CEEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 212 DGRIMCWKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 212 DGtIrvWd~~~g~~-~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
||.|.+|.+..-.. +.....+....|..|+-+|+.+...+-| +|+|+|.|.|+|+||+..+.-.++..
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------- 215 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------- 215 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------
Confidence 99999999754211 1122346678899999999999998754 48999999999999997654332221
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
....+++++.++.+..++.|+. +.|.+-++.+- .++..
T Consensus 216 ----------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~--------~~~~~----------- 254 (476)
T KOG0646|consen 216 ----------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL--------SGQSA----------- 254 (476)
T ss_pred ----------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC--------Ccccc-----------
Confidence 1335678888888888888874 45554443210 01100
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlW 445 (838)
.++ .... .+.....+.++|+.+ ...|.+|+++-||. |+||+.||.|++|
T Consensus 255 ----~v~---~k~~---------~~~~t~~~~~~Gh~~--------------~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 255 ----GVN---QKGR---------HEENTQINVLVGHEN--------------ESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred ----ccc---cccc---------ccccceeeeeccccC--------------CcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 000 0000 000001122233221 13788999999998 6899999999999
Q ss_pred cC-CCCeeeEeecCCccEEEEEE
Q 003217 446 DP-NGNRLQDFQYLPFAVQCLCT 467 (838)
Q Consensus 446 D~-~g~~l~tl~~H~~~V~sls~ 467 (838)
|+ .-+|++++....++|+.+..
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ecchHHHHHHHhhhccccceeEe
Confidence 99 67899998866778887754
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.69 E-value=2.2e-15 Score=163.51 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=181.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 190 g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
|+..|.+++++|.|-.++|||.|.+|+.||+.+-. .+...|+.+.--..| .|+++.||+.|. |+..|....+||.|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-as~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD-ASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEeccccc-ccchhhhccCccccc--ccceeeecCCCCeEEEEecCcceeEEc
Confidence 37789999999999999999999999999997631 111234433333444 799999999987 55555556899999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeeccc-ceeccceeeeecCCeEEEEEcCCC-CEEEEe-CCCcEEEEeccC-ccE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRS-HLSVNGFSSILTSDIKNLLSDHSR-AKVWSA-GFLSFALWDART-REL 344 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~-~~~~~~~~~~~s~~v~~las~~~~-~~V~s~-s~~tI~lWD~~t-g~~ 344 (838)
.+..+. ..+...... .+++.. .+++. .+.+.+..+.. ..+.++ .|++++|||+.. .+.
T Consensus 243 RdG~~~-~e~~KGDQY---------I~Dm~nTKGHia--------~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 243 RDGFEI-VEFSKGDQY---------IRDMYNTKGHIA--------ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred cCCcee-eeeeccchh---------hhhhhccCCcee--------eeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 876332 111111111 112211 11111 23333333322 234444 478999999965 333
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc--------
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG-------- 416 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~-------- 416 (838)
++++....+- .+.....+.+|.+.+..+..|..+|.+.+|..+...
T Consensus 305 ~qVik~k~~~--------------------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 305 LQVIKTKPAG--------------------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred eeEEeeccCC--------------------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee
Confidence 4444322110 011112234455555555566667766666533211
Q ss_pred -cCCC--ceEEEEEcCCCc-EEEEECCCeEEEEcC-C-CCeeeEeecCC----ccEEEEEEcCCEEEEEee------CCe
Q 003217 417 -DDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLP----FAVQCLCTFGSQIWVGYM------NGI 480 (838)
Q Consensus 417 -~~~~--~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~----~~V~sls~dG~~LasGs~------Dgt 480 (838)
.|.. .|.+|+||+||+ |+|-+.|+++|+||+ + .+++.+.++-. ..=.|++++.+.|++|++ .|+
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCce
Confidence 1333 789999999998 899999999999999 3 47777766522 222366788889999874 478
Q ss_pred EEEEeCCC-cccccccccccCEEEEEeCCC--EEEEEcCCCCeeeee
Q 003217 481 VQVLDLEG-NLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWN 524 (838)
Q Consensus 481 IrlWD~~g-~~i~~l~gH~~~V~sla~dg~--~l~S~S~DgtIrlWd 524 (838)
+.++|... ..+..+.-.+..|..+.++++ .|+.++.||+++++-
T Consensus 439 L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 99999753 444554444677888888876 588889999999864
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=9.2e-16 Score=158.04 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=82.9
Q ss_pred EEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCC--ccEEEEEEcCCEEEEEeeCCeEEEEeC----CCc-----ccc
Q 003217 425 LTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLP--FAVQCLCTFGSQIWVGYMNGIVQVLDL----EGN-----LLG 492 (838)
Q Consensus 425 la~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~--~~V~sls~dG~~LasGs~DgtIrlWD~----~g~-----~i~ 492 (838)
+-+..++. |.|++.|.+|.||+++|+.++++.... +.-..++++|++|++++.---|++|.+ .|. ..-
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf 272 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF 272 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh
Confidence 33444444 789999999999999999998886532 233467899999999999888999995 242 356
Q ss_pred cccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 493 GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 493 ~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.|+||.+.|.++++ +.+.++|.|.||++|+||...
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 78999999999987 566899999999999999654
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.68 E-value=1.6e-15 Score=163.37 Aligned_cols=249 Identities=17% Similarity=0.179 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEeccccccEEEEEEecC--CCEEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSY--GDLWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~d--G~L~SgS~DgtIr 265 (838)
.+.|..+..=|+. .+|||++..+.|-|||...-.... ...+..-..|.||++.=++|++++. |.|+|||.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 5667777666755 688889999999999987642100 0134455688999987788999985 5599999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
+||+...... ..... ......+| ...|..++...- ...+.+++ ++.+.|||+++++
T Consensus 204 lwdi~~~~~~------~~~~~------p~~~~~~h----------~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 204 LWDINAESKE------DKVVD------PKTIFSGH----------EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred EEeccccccC------Ccccc------ceEEeecC----------CcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999653221 00000 00011122 222333333322 23444555 4678899998631
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
. + . + . ....|...+.
T Consensus 262 ~-~---~--~------------------------~-----------------------------------~~~ah~~~vn 276 (422)
T KOG0264|consen 262 S-K---P--S------------------------H-----------------------------------SVKAHSAEVN 276 (422)
T ss_pred C-C---C--c------------------------c-----------------------------------cccccCCcee
Confidence 0 0 0 0 0 0113455667
Q ss_pred EEEEcCCC-c-EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--Cc-----
Q 003217 424 ALTTSIDG-M-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--GN----- 489 (838)
Q Consensus 424 ala~S~dg-~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g~----- 489 (838)
+++|+|-+ . ||+||.|++|+|||+ + .+++.+|.+|...|.+|.++ ...||+++.|+.+.|||+. |+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 78887743 3 799999999999999 4 57999999999999999653 3589999999999999975 32
Q ss_pred --------ccccccccccCEEEEEeCCC---EEEEEcCCCCeeeeecC
Q 003217 490 --------LLGGWVAHSSPVIKMAVGAG---YIFTLANHGGIRGWNVT 526 (838)
Q Consensus 490 --------~i~~l~gH~~~V~sla~dg~---~l~S~S~DgtIrlWdl~ 526 (838)
++-.-.||+..|..+.+++. .|+|++.|+.+.||+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 34566799999999987654 68999999999999964
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=8.3e-15 Score=151.27 Aligned_cols=258 Identities=20% Similarity=0.275 Sum_probs=172.2
Q ss_pred EEEEeCCCcEEEEECCCCc--cCC--CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 206 VWSGHRDGRIMCWKMNARL--LDS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~--~~~--~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
|+.|++...|--+++.-.. +.. ...+.+...+.+|.++|++||.+ |. ++|||.|-||+|+|+........+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-
Confidence 4556666655544443221 000 01234456778999999999986 44 7899999999999996533211111
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC--EEEEeC-CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~--~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
.+.+.++++.+.++-. .+.+|+ |+.|.+|++..=++++++.+|..-++.
T Consensus 81 ----------------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 81 ----------------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTD 132 (362)
T ss_pred ----------------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccce
Confidence 1234566666655442 455555 578999999988888888877543332
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec----cCcccc-CCCceEEEEEcCCCc
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA----KGGFGD-DNRRTEALTTSIDGM 432 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~----~g~~~~-~~~~v~ala~S~dg~ 432 (838)
+ ...|.++.++.-..|++.|.|. ++.+.- -......|.|+|.|-
T Consensus 133 l-------------------------------siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 133 L-------------------------------SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred e-------------------------------EecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 2 2333344445445566666654 122221 122233477888886
Q ss_pred -EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--
Q 003217 433 -IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (838)
.+.++.++ |-+|.+ +......+.- ...+.|+.+ ++..|++|..|+.|++||.. +.+...+.+|...|.+|.+
T Consensus 182 ~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 182 HFVVSGRNK-IDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred EEEEEeccE-EEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 66666665 999998 4444444432 245667755 68899999999999999988 7889999999999999973
Q ss_pred --CCCEEEEEcCCCCeeeeecCC
Q 003217 507 --GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 --dg~~l~S~S~DgtIrlWdl~s 527 (838)
++.+|+|+|.||.|++||+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred cCCceEEEEeccCceEEEEEccc
Confidence 567999999999999999753
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.9e-15 Score=173.50 Aligned_cols=213 Identities=20% Similarity=0.348 Sum_probs=142.0
Q ss_pred EEec-cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCccee-ee---------------------cCC----------
Q 003217 235 LSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA-LS---------------------LKP---------- 280 (838)
Q Consensus 235 ~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~-~~---------------------~~~---------- 280 (838)
+.++ +|.++|++|.||+||+ ||||++|+.||||.+..-+.. .. ...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4456 8999999999999999 899999999999998541100 00 000
Q ss_pred -CceeeeE-------EEE-eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 281 -EERHTAA-------LIV-ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 281 -~~~~~~~-------~~~-~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
....... +.+ +..+..+++ +..+|..+.-+. ...|.+++ |+|||||++.+.+||++|.+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~G----------Ht~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H 408 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKG----------HTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH 408 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhc----------cchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec
Confidence 0000000 000 000111112 245666665553 45556665 89999999999999999853
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI- 429 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~- 429 (838)
. .-|++|+|.|
T Consensus 409 n--------------------------------------------------------------------dfVTcVaFnPv 420 (712)
T KOG0283|consen 409 N--------------------------------------------------------------------DFVTCVAFNPV 420 (712)
T ss_pred C--------------------------------------------------------------------CeeEEEEeccc
Confidence 2 1244566655
Q ss_pred -CCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCCc-cccccc---------c
Q 003217 430 -DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGN-LLGGWV---------A 496 (838)
Q Consensus 430 -dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~-~i~~l~---------g 496 (838)
|..++|||-|+.||||++..+.+-....-..-|+++ .+||+..++|+.+|..++|+..+. +...+. .
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 445999999999999999655444443333678876 469999999999999999998863 322221 2
Q ss_pred cccCEEEEEe---CCCEEEEEcCCCCeeeeecCC
Q 003217 497 HSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 497 H~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s 527 (838)
|. .|+++.+ +...++-.+.|..|||+|...
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 22 7999975 445677789999999999744
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.6e-14 Score=159.04 Aligned_cols=235 Identities=18% Similarity=0.251 Sum_probs=168.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.++|.|||++.+.+.||.+=.||.|.+|++..+ .-+...+.|| .+.|-+++|++.|+|.|.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 458999999999999999999999999999875 2345566777 47899999999899999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
.+++.......- .+.+-.++..+.+..+..+.+ +.+...+..++...
T Consensus 98 ~~lk~~~~~d~~-----------------------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~--- 145 (691)
T KOG2048|consen 98 HTLKQKYNIDSN-----------------------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT--- 145 (691)
T ss_pred ccCceeEEecCC-----------------------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEE---
Confidence 876544332110 112233344444444444332 22222332222210
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
+. -.|-....++.+|.+.
T Consensus 146 ------------------------------------------~~--------------------r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 146 ------------------------------------------YK--------------------RSLMRQKSRVLSLSWN 163 (691)
T ss_pred ------------------------------------------EE--------------------eecccccceEEEEEec
Confidence 00 0022234567789999
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeee--Ee---ec---CCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQ--DF---QY---LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~--tl---~~---H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
+++. |++||.||.|++||+ ++..++ ++ .. ..--|++|.+ ....|++|.+-|+|+.||.. |.++++...
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9998 999999999999999 676554 22 11 1223566654 45699999999999999987 899999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
|...|.+|+. +++++++++.|+.|-.+...
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 9999999985 56799999999998777644
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=8e-16 Score=174.04 Aligned_cols=225 Identities=18% Similarity=0.226 Sum_probs=161.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCCcceeeecC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
+.++|||++..|.|-+||+.... +-+.+..|..|+..|+++.|++-- . |+|||.||+||+||+.......++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~- 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF- 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-
Confidence 35799999999999999998721 114556789999999999999854 3 789999999999999653321111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEe
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
++ .+..++.+.+++. +.+.+++.+ +.+++||++.-.. .
T Consensus 173 ------------------~~----------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------~--- 212 (839)
T KOG0269|consen 173 ------------------RS----------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------C--- 212 (839)
T ss_pred ------------------cc----------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------H---
Confidence 11 1344666666554 446666665 5788999964211 0
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
. -.+..|.+.|.++.++|++. |++|
T Consensus 213 -------------------------~-----------------------------~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 213 -------------------------E-----------------------------KKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred -------------------------H-----------------------------HHhhcccCceEEEeecCCCceeeec
Confidence 0 01445777788899999876 8999
Q ss_pred ECCCeEEEEcCCC-C--eeeEeecCCccEEEEEEc--C-CEEEEEee--CCeEEEEeCCCc--ccccccccccCEEEEEe
Q 003217 437 GANGLLLQWDPNG-N--RLQDFQYLPFAVQCLCTF--G-SQIWVGYM--NGIVQVLDLEGN--LLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 437 s~DgtIrlWD~~g-~--~l~tl~~H~~~V~sls~d--G-~~LasGs~--DgtIrlWD~~g~--~i~~l~gH~~~V~sla~ 506 (838)
+.|++|||||.++ + .+.++. -..+|.+|.+- - .+|++++. |-.|+|||+... +-+++..|++.|+.+++
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred CCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 9999999999964 2 233332 13567777653 2 37888774 889999999865 46899999999999997
Q ss_pred CC---CEEEEEcCCCCeeeeecCC
Q 003217 507 GA---GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 dg---~~l~S~S~DgtIrlWdl~s 527 (838)
++ ..++|+|.|++|..=.+++
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhc
Confidence 44 4688999999986544443
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.4e-15 Score=148.49 Aligned_cols=243 Identities=14% Similarity=0.116 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~ 269 (838)
.|..+..|=-|++|||+++|++||++...... ..+.+.+|.||++||+.++|-. .|. |+|+|.||.|-||.-
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 34445555568999999999999999987742 2356788999999999999986 687 789999999999997
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCc-cEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTR-ELL 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg-~~l 345 (838)
+++.-... .... .| ...+.+++..+ .+-.+++++ |+.|.|.+.++. .-.
T Consensus 88 ~~g~w~k~-~e~~----------------~h----------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~ 140 (299)
T KOG1332|consen 88 ENGRWTKA-YEHA----------------AH----------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT 140 (299)
T ss_pred CCCchhhh-hhhh----------------hh----------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence 65421100 0000 01 22333344333 223445544 567777665432 100
Q ss_pred --EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe-c----cCccccC
Q 003217 346 --KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA-A----KGGFGDD 418 (838)
Q Consensus 346 --~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~-~----~g~~~~~ 418 (838)
+... .|.-|+..+. . .|.+.++
T Consensus 141 t~ki~~---------------------------------------------------aH~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 141 TSKIVF---------------------------------------------------AHEIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred chhhhh---------------------------------------------------ccccccceeeecCcCCCcccccc
Confidence 0000 1111111110 0 0111111
Q ss_pred CCceEEEEEcCCCcEEEEECCCeEEEEcC-CC--CeeeEeecCCccEEEEEE--c-C---CEEEEEeeCCeEEEEeCC--
Q 003217 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F-G---SQIWVGYMNGIVQVLDLE-- 487 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~~V~sls~--d-G---~~LasGs~DgtIrlWD~~-- 487 (838)
.. ..+-.+++||+.|++|+||+. ++ +.-++|.+|+++|..++. . | .+||+++.||++.||-..
T Consensus 170 ~~------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 170 GP------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred Cc------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 00 011235899999999999999 44 445669999999998853 2 2 399999999999999754
Q ss_pred Cc--ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 488 GN--LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 488 g~--~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+. ....+.--.+.|+.+.+ .|..|+-++.|+.|.+|.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 22 12233334678999875 788888888999999998
No 125
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-14 Score=146.09 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=125.4
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 141 ~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+++.|++ +-|.++.||=..++...+. +.+| +++|+|+.+|-+.+.|.||+.|.++|+||
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGt-------------------y~GH-tGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGT-------------------YDGH-TGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeee-------------------ecCC-CceEEEEEecCCcceeeeccccceeEEEE
Confidence 4668887 5599999997655444332 3345 89999999999999999999999999999
Q ss_pred CCCCcc------------------------------------------CCC---CCcceeEEeccccccEEEEEEecCCC
Q 003217 220 MNARLL------------------------------------------DSD---DGFGEVLSWQAHRGPVLSLCISSYGD 254 (838)
Q Consensus 220 ~~~g~~------------------------------------------~~~---~~~~~~~~l~gH~~~V~slafs~dG~ 254 (838)
+++|.+ +.. ..-++.+.+.-|...++++.++|-++
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999963 000 01122445556778899999999988
Q ss_pred -EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CC
Q 003217 255 -LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL 332 (838)
Q Consensus 255 -L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~ 332 (838)
|++|-+||.|..||+.++...+.-.. -| +..+..+..+++.....+++ |.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~------------------~h----------~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDE------------------EH----------SSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechh------------------hh----------ccccccccccCCcceEEecccCc
Confidence 89999999999999987644322110 01 33456666777777777776 67
Q ss_pred cEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 333 SFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 333 tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
+-++||..+-++++++.-... ++..++++.
T Consensus 213 takl~D~~tl~v~Kty~te~P-vN~aaisP~ 242 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERP-VNTAAISPL 242 (327)
T ss_pred cceeeeccceeeEEEeeeccc-ccceecccc
Confidence 899999999999999865432 244455543
No 126
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=1.5e-14 Score=145.89 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=159.7
Q ss_pred EEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003217 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (838)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (838)
+.+++|.+.|.+|+|..+|. |++||.|++++||+++......... .++| +..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh----------~~s 66 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV-----------------YRGH----------TDS 66 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc-----------------ccCC----------Ccc
Confidence 45789999999999999997 9999999999999997642221111 1122 223
Q ss_pred eEEEEEcCC-CCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeE
Q 003217 314 IKNLLSDHS-RAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 314 v~~las~~~-~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
|..++.++. ...++++ ++++|++||.++++++....-.+...+ +..
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~--------------------------------i~w 114 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN--------------------------------ITW 114 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE--------------------------------EEE
Confidence 334444332 2344444 468999999999999776543322110 112
Q ss_pred eecCcceeeecC-CcEEEEeccC--cc--ccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEE
Q 003217 392 FQRSRNAIMGAA-DAVRRVAAKG--GF--GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC 464 (838)
Q Consensus 392 ~~~~~~~~~g~~-~~v~~v~~~g--~~--~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~s 464 (838)
+|.+.+.+.+.. +.+.-+.... .. .+....+.-+.+..++. .......|+|.|-.- .-+.+++++.|+..-.|
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 222222222222 1221111100 00 01112233455554444 344445789999887 77999999999977777
Q ss_pred EEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 465 LCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 465 ls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
|.+ +|+++|+|+.|..+-|||++ =-|.+.+.-|.-+|..|.+ ||++|+|||.|..|-|=++.++..+..+.
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 755 69999999999999999997 4578999999999999985 89999999999999877777766665554
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=9.4e-15 Score=163.25 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=151.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC---C-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrv 266 (838)
...+.|++++|+|+.||+|..-|.+||+++..- ++.....+|...|.|+.||..- + |+|||.|..|.|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhh--------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 567999999999999999999999999999874 5666789999999999999642 3 689999999999
Q ss_pred EECCCcce-eeecCCCceeeeEEEEeec-------------eeecccce-eccce------eeeecCCeEEEEEcCCCCE
Q 003217 267 WPWEAIEK-ALSLKPEERHTAALIVERS-------------YIDLRSHL-SVNGF------SSILTSDIKNLLSDHSRAK 325 (838)
Q Consensus 267 Wd~~~~~~-~~~~~~~~~~~~~~~~~~s-------------~~~l~~~~-~~~~~------~~~~s~~v~~las~~~~~~ 325 (838)
+|+...-. ..++..+...+.++-+..+ .+.++... ...+. ..+....+..++.++.-..
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 99854111 1112222222222211111 11111110 00011 1111233445566665555
Q ss_pred EEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC
Q 003217 326 VWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (838)
Q Consensus 326 V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (838)
++++ .|+.|+|+|+.+|+..++|.+...
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~--------------------------------------------------- 639 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRD--------------------------------------------------- 639 (1080)
T ss_pred EEEEecccceEEEeccccceeeeeccccc---------------------------------------------------
Confidence 5444 467788888888877777754211
Q ss_pred cEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCe
Q 003217 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI 480 (838)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~Dgt 480 (838)
|.+...-|..+|.|. |++.+.|+++.++|. +|+|+.++.||...|+.+.+ |-++|++.+.||.
T Consensus 640 -------------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 640 -------------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred -------------CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 001111233456565 888889999999999 89999999999999999876 5679999999999
Q ss_pred EEEEeCC
Q 003217 481 VQVLDLE 487 (838)
Q Consensus 481 IrlWD~~ 487 (838)
|.||.+.
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9999964
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=8.2e-14 Score=143.84 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=169.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
..|..|.|+|.+..|..++.||++|+++.... .... .--|..|+.+++|.++.++++|+-||.||+.|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~-~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKL-KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhh-heecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 36889999999999999999999999999874 2222 23588999999999988999999999999999987
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~ 350 (838)
+....... | ...++++......+.|.+|+| ++|++||.+...+..++..
T Consensus 85 ~~~~~igt--------------------h----------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 85 GNEDQIGT--------------------H----------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred Ccceeecc--------------------C----------CCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 54322111 1 334677777666778889996 6899999987544433322
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc----Ccccc----CCCce
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----GGFGD----DNRRT 422 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~----g~~~~----~~~~v 422 (838)
...+ ...+ -.+..+++|..+....++.. ..++. -...+
T Consensus 135 ~kkV-y~~~---------------------------------v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 135 GKKV-YCMD---------------------------------VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred CceE-EEEe---------------------------------ccCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 1111 1100 01223345555443333331 11211 12346
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcCC-C----CeeeEeecCC---------ccEEEEEEcC--CEEEEEeeCCeEEEEe
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDPN-G----NRLQDFQYLP---------FAVQCLCTFG--SQIWVGYMNGIVQVLD 485 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~~-g----~~l~tl~~H~---------~~V~sls~dG--~~LasGs~DgtIrlWD 485 (838)
++|+.-|++. .+.+|-||-|-+=..+ . +.-..|+.|. .+|+++++.. ..+|+|+.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 6777667555 6777889977665542 2 3445677764 3678888764 4899999999999999
Q ss_pred CC-CcccccccccccCEEEEEe--CCCEEEEEc
Q 003217 486 LE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLA 515 (838)
Q Consensus 486 ~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S 515 (838)
+. .+.+..+..-...|.++++ ||..||.++
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 87 4566777666677888875 788888765
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.1e-14 Score=156.37 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=153.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE------------------eccccccEEEEEEecCCC--EEEeeCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS------------------WQAHRGPVLSLCISSYGD--LWSGSEG 261 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~------------------l~gH~~~V~slafs~dG~--L~SgS~D 261 (838)
.|.++|.|+.|-.|.|||+.-.. ...+..+ -+||+.+|.+|++..+-+ |+|||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d-----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD-----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEecccccc-----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 46799999999999999986431 0111111 247999999999988765 8999999
Q ss_pred CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEec
Q 003217 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDA 339 (838)
Q Consensus 262 gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~ 339 (838)
.||++||++++++..++..+ ..+|.++...+... .+.+|+ +++++|.|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~-----------------------------~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHH-----------------------------GKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceEEEEEcCCCCcceehhhc-----------------------------CCceeEEEecCCCceEEEeccccceEEeeec
Confidence 99999999987765544321 34556666655433 455666 578999998
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
+.-.. .... |+- .
T Consensus 317 R~~~~-------s~~~---------------------wk~---------------------------------------~ 329 (463)
T KOG0270|consen 317 RDPSN-------SGKE---------------------WKF---------------------------------------D 329 (463)
T ss_pred cCccc-------cCce---------------------EEe---------------------------------------c
Confidence 74110 0000 000 0
Q ss_pred CceEEEEEcCCC--cEEEEECCCeEEEEcC--CCCeeeEeecCCccEEEEEEcC---CEEEEEeeCCeEEEEeCCCcccc
Q 003217 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGNLLG 492 (838)
Q Consensus 420 ~~v~ala~S~dg--~l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g~~i~ 492 (838)
..|+.+++.+.. .+++++.||+|+=.|+ .|+++-+++.|...|.+|+..+ ..+++++.|++|+||++.+..-.
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 112223333322 3567788999999999 3799999999999999998764 48999999999999998743323
Q ss_pred ccccccc---CEEEEEeCC---CEEEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSS---PVIKMAVGA---GYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~---~V~sla~dg---~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.-..|.- ...|.+.++ ..++.|+..+.+|+||+.+..+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 3333432 233444443 3577788888899999876543
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.9e-16 Score=176.29 Aligned_cols=216 Identities=18% Similarity=0.264 Sum_probs=164.6
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
..+..+..+-..|+|+.. .+.+|...|.++..-..++ +++|++|-.+-||....--...++
T Consensus 5 ~~~m~~~~~t~Lr~~~~~--------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~---- 66 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR--------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL---- 66 (825)
T ss_pred cccceeeeeeccccccch--------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee----
Confidence 344555556667778653 2457899999998866666 689999999999987321111111
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
.+| ...+.++.++.....|+.|+ +++|++||+..++.+++|.+|-.
T Consensus 67 ---------------~~h----------espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-------- 113 (825)
T KOG0267|consen 67 ---------------TGH----------ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-------- 113 (825)
T ss_pred ---------------ecc----------CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--------
Confidence 122 55678888888787887776 67999999998877666654321
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
.+..|.|.|-+. .++|+.|.
T Consensus 114 -----------------------------------------------------------~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 114 -----------------------------------------------------------NITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred -----------------------------------------------------------CcceeeeccceEEeccccccc
Confidence 122344555444 57899999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEE
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTL 514 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~ 514 (838)
.+++||. .-.|.+++.+|...|.++ .++|+++++|+.|.+++|||+. |+++..|.+|.+.|.++.+++. .+++|
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 9999999 478999999999888876 5689999999999999999986 9999999999999999987664 56799
Q ss_pred cCCCCeeeeecCCCC
Q 003217 515 ANHGGIRGWNVTSPG 529 (838)
Q Consensus 515 S~DgtIrlWdl~s~~ 529 (838)
|.|++||+||++++.
T Consensus 215 s~d~tv~f~dletfe 229 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFE 229 (825)
T ss_pred CCCceeeeeccceeE
Confidence 999999999987543
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.7e-14 Score=157.58 Aligned_cols=287 Identities=15% Similarity=0.141 Sum_probs=180.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
++-|.|+..+|.|.+|+||+.||++|+|.+.+| +++.+++- .+.|.||+|+|.+. ++..+.+.++-|-+
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 889999999999999999999999999999998 66666542 34899999999987 45555555565555
Q ss_pred CCCcceeee---------cCCCceeeeEEEEeeceeecccc---eeccceeee--ecCCeEEEEEcCCCCEEEEeCC---
Q 003217 269 WEAIEKALS---------LKPEERHTAALIVERSYIDLRSH---LSVNGFSSI--LTSDIKNLLSDHSRAKVWSAGF--- 331 (838)
Q Consensus 269 ~~~~~~~~~---------~~~~~~~~~~~~~~~s~~~l~~~---~~~~~~~~~--~s~~v~~las~~~~~~V~s~s~--- 331 (838)
..-+.+... ...+..... ..+.+... .-..++|.. ....++.+.-...|..+++..-
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~------~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDA------AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcc------cceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 432211100 000000000 00011000 000111111 1122333333333333332211
Q ss_pred -CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 332 -LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 332 -~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
..|.|.++..+....-| . +.......+.|.+.....++.++..++.++
T Consensus 545 ~~~VliHQLSK~~sQ~PF-----------------------------~--kskG~vq~v~FHPs~p~lfVaTq~~vRiYd 593 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPF-----------------------------R--KSKGLVQRVKFHPSKPYLFVATQRSVRIYD 593 (733)
T ss_pred cceEEEEecccccccCch-----------------------------h--hcCCceeEEEecCCCceEEEEeccceEEEe
Confidence 23333333322111001 0 011122245677777777888887777666
Q ss_pred c-cC----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC--CCCeeeEeecCCccEEEEEEcCC--EEEEEeeCCe
Q 003217 411 A-KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGI 480 (838)
Q Consensus 411 ~-~g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~sls~dG~--~LasGs~Dgt 480 (838)
. +. .+......+..++++|.|- |+.|+.|+.+..+|+ ..+..+++..|...|.+|++.++ .+++|+.||+
T Consensus 594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 4 22 2223456788899999775 899999999998898 45789999999999999999887 8999999999
Q ss_pred EEEEe------CCCc----ccccccccccC----EEEEEeCCC--EEEEEcCCCCeeee
Q 003217 481 VQVLD------LEGN----LLGGWVAHSSP----VIKMAVGAG--YIFTLANHGGIRGW 523 (838)
Q Consensus 481 IrlWD------~~g~----~i~~l~gH~~~----V~sla~dg~--~l~S~S~DgtIrlW 523 (838)
+.|+- +-.+ .+..+.||... |....++++ +|+|++.||+||+|
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99984 2111 47889999766 777778876 79999999999998
No 132
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.3e-15 Score=162.20 Aligned_cols=265 Identities=21% Similarity=0.273 Sum_probs=160.3
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~~--~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.++|.++.+.. .|+. +.|++|++|++++.... .-...++...|+. | .+||+|+++.+.++.++||
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------~~~~~epi~tfra--H-~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------AEKDVEPILTFRA--H-EGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------cccceeeeEEEec--c-cCceEEEEecCCceEEEee
Confidence 46666666533 4544 67999999999552211 1122344444554 3 8899999999999999999
Q ss_pred eCCCcEEEEECCCCccCC---CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 210 HRDGRIMCWKMNARLLDS---DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~---~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
+.||+||.|++... .++ ..+.....++.||++.|+.+++|+... |+++|.|||+|+|+...... .++.....+.
T Consensus 363 g~Dg~I~~w~~p~n-~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPN-QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCC-CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99999999987632 211 223344567899999999999998765 99999999999999854332 1111111111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
..++ +..-.....+..++. +---+.|..++.-+.+|....
T Consensus 441 ~Pls---------------------------vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~----------- 482 (577)
T KOG0642|consen 441 YPLS---------------------------VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA----------- 482 (577)
T ss_pred Ccce---------------------------EeeccchhHhhhhhcccccccchhhhhhhheeeccccC-----------
Confidence 1111 111000000000000 001122333322222221000
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-CCcEEEEECCCeE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGMIWTGGANGLL 442 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~-dg~l~Sgs~DgtI 442 (838)
.. +.++ ...+.-++..| .+..+++..|+.|
T Consensus 483 -----------------------------------~~----~~~~----------~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 483 -----------------------------------SP----GPRR----------YPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred -----------------------------------CC----cccc----------cCccceEEecCCCCeeEecccCCce
Confidence 00 0000 00011112222 2346788899999
Q ss_pred EEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
++.|. +|+.+..+..|...|++++.+ |.+|++|+.|+.|++|.+. -.++....+|.
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999 799999999999999998764 7799999999999999986 34566666664
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=151.78 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=96.4
Q ss_pred cccCCCceEEEEEcCC--CcEEEEECCCeEEEEcC-CC---CeeeEeecCCccEEEEEEcCC--EEEEEeeCCeEEEEeC
Q 003217 415 FGDDNRRTEALTTSID--GMIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDL 486 (838)
Q Consensus 415 ~~~~~~~v~ala~S~d--g~l~Sgs~DgtIrlWD~-~g---~~l~tl~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~ 486 (838)
|.+|...|+.|.+||. +.++|||.||+|||||+ .+ .|+-+ +.|...|+.|+++++ +||+|+.||+++|||+
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 5567788888998874 56899999999999999 56 45555 789999999998754 8999999999999997
Q ss_pred C----CcccccccccccCEEEEEeC---CCEEEEEcCCCCeeeeecCC
Q 003217 487 E----GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 487 ~----g~~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrlWdl~s 527 (838)
. +++++.++-|..+|++|.+. .+.++.+|.|..|.+||+..
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 5 57899999999999999975 56788899999999999865
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=1.7e-13 Score=153.70 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=91.6
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCC-----eEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~Dg-----tIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
+|...|.+++.+|+|. ++|++... .|+||+. +=...+.+.+|+-.|+-++ +||++|++.+.|+++.||...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 4777899999999998 56766542 5999999 4466778999999999885 589999999999999999864
Q ss_pred -Cc----ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 488 -GN----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 488 -g~----~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+. -....+.|+-.||+-. +++.+++|+|.|++|++|....
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 21 2445789999999876 5788999999999999999643
No 135
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.2e-13 Score=138.09 Aligned_cols=245 Identities=14% Similarity=0.201 Sum_probs=171.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-CCCCC-cceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-DSDDG-FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~-~~~~~-~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
..|++-+++|-+++|+.|+.+|+|-+..+..-.- ....+ -..+...++|.++|+.|+|. |..|+||+. |.|+-|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeee
Confidence 3567778899999999999999999998754210 00011 12345569999999999998 445788875 99999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeCCCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s~~tI~lWD~~tg~~l~~l 348 (838)
...++.....+ ++.+. ..-.+..++-+++..+..++. +..+.+++|..+.-||+++|+..++|
T Consensus 89 ~E~~es~~~K~-------------lwe~~---~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATKR-------------LWEVK---IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred hhhhhhccchh-------------hhhhc---CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 65332111100 00000 000111234567888888754 45666777889999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE-
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT- 427 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~- 427 (838)
.+|.... .+++-
T Consensus 153 rGHtDYv-------------------------------------------------------------------H~vv~R 165 (325)
T KOG0649|consen 153 RGHTDYV-------------------------------------------------------------------HSVVGR 165 (325)
T ss_pred cCCccee-------------------------------------------------------------------eeeeec
Confidence 7776432 11221
Q ss_pred cCCCcEEEEECCCeEEEEcC-CCCeeeEeec---------C-CccEEEEEEcCCEEEEEeeCCeEEEEeCC-Cc--cccc
Q 003217 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQY---------L-PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN--LLGG 493 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~---------H-~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~--~i~~ 493 (838)
+..++++||++||++|+||. ++++++++.. | ..+|.+++.+..+++.|+ ...+.||.+. .+ ++-.
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 34678999999999999999 7899988763 2 346889999999998875 6679999986 34 4445
Q ss_pred ccccccCEEEEEeCCCEEEEEcCCCCeeeeec
Q 003217 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 494 l~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl 525 (838)
+.+| |.-+.++.+.+++++..+.|.-|.+
T Consensus 245 ipa~---v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 245 IPAR---VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred cccc---eeEeeeecceEEEeccccceeeeee
Confidence 5555 6667788889999998888888875
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.59 E-value=9.2e-13 Score=141.84 Aligned_cols=244 Identities=11% Similarity=0.056 Sum_probs=152.9
Q ss_pred cCCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 003217 141 TEEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-HRDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG-s~DGtIrv 217 (838)
++..+++ +.++.|++||..+...... +.....+.+++++|+++.++.+ +.|+.|++
T Consensus 41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 41 DGKLLYVCASDSDTIQVIDLATGEVIGT---------------------LPSGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEe---------------------ccCCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 4556665 3478999999876432210 0001234578899999977655 56899999
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC-cEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG-GIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg-tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
||+.++ +.+..+.. ...+.+++|+|+|+ +++++.++ .+.+||..+.+.......
T Consensus 100 ~d~~~~--------~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--------------- 155 (300)
T TIGR03866 100 IDIETR--------KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--------------- 155 (300)
T ss_pred EECCCC--------eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---------------
Confidence 999875 44444442 23468899999998 56777664 577788865332111000
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccccee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
......+++++++..++.++ ++.|++||+.++++++.+..+...
T Consensus 156 ---------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~------------------- 201 (300)
T TIGR03866 156 ---------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG------------------- 201 (300)
T ss_pred ---------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc-------------------
Confidence 11223456667777775443 578999999998876654321000
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcE-E-EEECCCeEEEEcC-CCC
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI-W-TGGANGLLLQWDP-NGN 450 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l-~-Sgs~DgtIrlWD~-~g~ 450 (838)
.. ........++++|+|.. + +.+.++.|.+||+ +++
T Consensus 202 ------~~-----------------------------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 202 ------VH-----------------------------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ------cc-----------------------------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 00 00001123567888873 3 3445678999999 677
Q ss_pred eeeEeecCCccEEEEE--EcCCEEEEEe-eCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 451 RLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
.+..+. +...+.+++ ++|++|+++. .++.|++||++ ++++..+..+ ...++|++
T Consensus 241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEe
Confidence 766553 344677765 4789998874 58999999998 6777777654 44466654
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=4.8e-14 Score=144.15 Aligned_cols=210 Identities=21% Similarity=0.270 Sum_probs=139.0
Q ss_pred cccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcce-eee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCe
Q 003217 239 AHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEK-ALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDI 314 (838)
Q Consensus 239 gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v 314 (838)
-|.+.|+++.+.+. |+ ++||+.||.|-|||++.... .-+ +.....+.. +..+.++... .+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v------------~~~h~~~Hky----~i 104 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV------------AKQHENGHKY----AI 104 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec------------cccCCcccee----ee
Confidence 58899999999874 66 78999999999999976321 000 000000000 0001111110 11
Q ss_pred EEE-EEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEe
Q 003217 315 KNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (838)
Q Consensus 315 ~~l-as~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (838)
..+ -...+.+...+++ |.++++||..|-+..-+|...+.+ .+-++++.+
T Consensus 105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~V-YshamSp~a---------------------------- 155 (397)
T KOG4283|consen 105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKV-YSHAMSPMA---------------------------- 155 (397)
T ss_pred eeeEEeeecCceeecccccceEEEeecccceeeEEeecCcee-ehhhcChhh----------------------------
Confidence 111 1234566666666 679999999998776666554332 111111100
Q ss_pred ecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--C
Q 003217 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--G 469 (838)
Q Consensus 393 ~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G 469 (838)
. .--.|++|..|-.|++-|+ .|.+-+++.||...|.++... .
T Consensus 156 ----------------------------------~-sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 156 ----------------------------------M-SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ----------------------------------h-cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 0 0012677888889999999 799999999999999999664 3
Q ss_pred C-EEEEEeeCCeEEEEeCC---C----------c---ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 470 S-QIWVGYMNGIVQVLDLE---G----------N---LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 470 ~-~LasGs~DgtIrlWD~~---g----------~---~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+ .|++|+.||.||+||+. | + .+++-.+|.+.|.++++ |+.++++.++|..+|+|+..+.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 3 78899999999999964 2 1 13345688899999985 8999999999999999997653
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.7e-14 Score=140.08 Aligned_cols=242 Identities=14% Similarity=0.183 Sum_probs=150.9
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaSGs~DGtIrvW 218 (838)
+.+|.+ ++|++|||+........ ...+.++ +| .+||.-+++.. -|.+|||+|+||+|.+|
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s--------------~ll~~L~--Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQS--------------KLLAELT--GH-SGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCc--------------eeeeEec--CC-CCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 556665 78999999998542210 0011111 23 89999999976 79999999999999999
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCc-ceeeecCCCceeeeEEEEeece
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~-~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
.-+++ ++.....+.+|...|++|+|-|.+. |+.||.||.|.|-+.++. .-..+- .
T Consensus 86 ke~~g------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k-i-------------- 144 (299)
T KOG1332|consen 86 KEENG------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK-I-------------- 144 (299)
T ss_pred ecCCC------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh-h--------------
Confidence 98775 3566677889999999999999753 789999999999987652 100000 0
Q ss_pred eecccc-eeccceeeeecCCeEEEEEcC---CCCEEEEeC-CCcEEEEeccCccEE--EEEecCCceEEeeecccCcccc
Q 003217 295 IDLRSH-LSVNGFSSILTSDIKNLLSDH---SRAKVWSAG-FLSFALWDARTRELL--KVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 295 ~~l~~~-~~~~~~~~~~s~~v~~las~~---~~~~V~s~s-~~tI~lWD~~tg~~l--~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
..+| ..++.++-.|...--.+.... .-.++++++ |..|+||+...++-. ++|
T Consensus 145 --~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l------------------- 203 (299)
T KOG1332|consen 145 --VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL------------------- 203 (299)
T ss_pred --hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh-------------------
Confidence 0001 011222222211100111111 113566766 678999987664210 112
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-----CcEEEEECCCeE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-----GMIWTGGANGLL 442 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-----g~l~Sgs~DgtI 442 (838)
.+|...|+.++..|. .+|+|+|.||+|
T Consensus 204 ------------------------------------------------~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 204 ------------------------------------------------EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred ------------------------------------------------hhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 223333333443332 368999999999
Q ss_pred EEEcCC--CCe--eeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEe--CCCcc
Q 003217 443 LQWDPN--GNR--LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD--LEGNL 490 (838)
Q Consensus 443 rlWD~~--g~~--l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD--~~g~~ 490 (838)
.||... ++. ...++.-...+..++ +.|..|++++.|+.|.||- ++|+-
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 999863 211 111222345677775 5799999999999999996 44653
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.58 E-value=2e-13 Score=147.39 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=156.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCC-ceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLL 225 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~ 225 (838)
+..+.|.|||..+...... ..| +-.| ++-.+| ...=+.|.|++. ...|+||+.|++|.+||+.....
T Consensus 144 t~~~dv~Vfd~tk~~s~~~--------~~~--~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPK--------ASG--ECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCEEEEEeccCCCccc--------ccc--cCCCceEEEee-cccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 3467999999865322110 111 1112 122223 444556888774 37899999999999999987521
Q ss_pred CCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceec
Q 003217 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (838)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 303 (838)
+ .........+.+|...|..++|.+-.. +.|++.|+.+.|||+.+.+... .+. ..+|
T Consensus 213 ~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------~~~-----------~~ah--- 271 (422)
T KOG0264|consen 213 E-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------SHS-----------VKAH--- 271 (422)
T ss_pred C-CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------ccc-----------cccc---
Confidence 0 112334566899999999999998654 5799999999999997521100 000 0112
Q ss_pred cceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecC
Q 003217 304 NGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (838)
Q Consensus 304 ~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~ 380 (838)
+.++.|+++.+- +..|++++ |++|+|||++. .+++.+|.
T Consensus 272 -------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e------------------------------- 313 (422)
T KOG0264|consen 272 -------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE------------------------------- 313 (422)
T ss_pred -------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-------------------------------
Confidence 667889998774 45677777 79999999975 22222322
Q ss_pred CCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEECCCeEEEEcCC--CCe-----
Q 003217 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDPN--GNR----- 451 (838)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~~--g~~----- 451 (838)
+|...|..|.+||.. .|+|++.|+.+.+||++ |+.
T Consensus 314 ------------------------------------~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 314 ------------------------------------GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred ------------------------------------CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 233334455666653 37899999999999983 432
Q ss_pred --------eeEeecCCccEEEEEEcC---CEEEEEeeCCeEEEEeCCCc
Q 003217 452 --------LQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 452 --------l~tl~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g~ 489 (838)
+-+-.||...|..++.+. -.|+|.+.|+.++||.....
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 244458999999887653 38999999999999997643
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=2.4e-13 Score=139.16 Aligned_cols=295 Identities=16% Similarity=0.167 Sum_probs=179.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcc--CCCCCcceeE-----EeccccccEEEEEEecC--CCEEEeeC
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLL--DSDDGFGEVL-----SWQAHRGPVLSLCISSY--GDLWSGSE 260 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~--~~~~~~~~~~-----~l~gH~~~V~slafs~d--G~L~SgS~ 260 (838)
.++|.+|.+++ .|+++.||+.||.|-+||++.... .+.-..+... .-.+|+-+|.++-+=|- |-+.|+|.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 67999999998 589999999999999999976421 0000011111 12478889999988874 44679999
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEec
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDA 339 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~ 339 (838)
|.++||||..+.+....+..++.. . .| ....++.+ ...|++|.+ -.|+|-|+
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~V-Y------------sh------------amSp~a~s--HcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKV-Y------------SH------------AMSPMAMS--HCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred cceEEEeecccceeeEEeecCcee-e------------hh------------hcChhhhc--ceEEEEecCCCcEEEEec
Confidence 999999999886554444332210 0 01 01112222 234555554 47999999
Q ss_pred cCccEEEEEecCCceEEeeecccCccc-----ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDF-----AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (838)
.+|.+-++|.+|.+-+-.++.++..+. +.|..+|.|.+.. +.+++...+.. .+.+ .....+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr-----asgcf~~lD~h--------n~k~-~p~~~~ 241 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR-----ASGCFRVLDQH--------NTKR-PPILKT 241 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec-----ccceeEEeecc--------cCcc-Cccccc
Confidence 999999999998875555555553322 1122222111110 00111111100 0000 000001
Q ss_pred cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCC-eeeEee--cCCccEE-E--E-EEcCCEEEEEeeCCeEEEEe
Q 003217 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQ--YLPFAVQ-C--L-CTFGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~-~l~tl~--~H~~~V~-s--l-s~dG~~LasGs~DgtIrlWD 485 (838)
-..|..+|..++++.||. +|+++.|..+++|+. +|+ -++.+- .|+..+. . + +.+...++---.++++.|++
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEE
Confidence 234778899999999987 899999999999998 663 233331 1222111 0 1 22222222223468899998
Q ss_pred C-CCcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 486 L-EGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 486 ~-~g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
+ +|..++.|.+|-..|.+-+. +=+...+++.|+.|.-|-..
T Consensus 322 ~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 6 48889999999888888765 44578999999999999863
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.57 E-value=7.9e-13 Score=151.09 Aligned_cols=330 Identities=12% Similarity=0.119 Sum_probs=207.9
Q ss_pred CCEEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~-g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+..+.+ |. .|.+-+||++....... ....| .++|....|-|..-.|+|++.|...|+|-
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v------------------~~nah-~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINV------------------TRNAH-YGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeee------------------eeccc-cCCcccceecCCCceEeeccCCCceeEEE
Confidence 554544 43 35699999976443321 12233 56777777878888999999999999998
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEe-cCCC-EEEeeCCCcEEEEECCCcc--ee------------eecC----
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD-LWSGSEGGGIKIWPWEAIE--KA------------LSLK---- 279 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs-~dG~-L~SgS~DgtIrvWd~~~~~--~~------------~~~~---- 279 (838)
.+++.+ .-+.++.-.||..|-.+|.|- ..|. +.|++.|++.|..++.... +. +...
T Consensus 317 fD~~dg----~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 317 FDSGDG----VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eeCCCC----cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 776521 113344457999999999997 5676 7899999999999863200 00 0000
Q ss_pred CCceeeeEEEEee-----------------c--eeecccceeccceeeeec------CCeEEEEEcCCCCEEEEeCC-Cc
Q 003217 280 PEERHTAALIVER-----------------S--YIDLRSHLSVNGFSSILT------SDIKNLLSDHSRAKVWSAGF-LS 333 (838)
Q Consensus 280 ~~~~~~~~~~~~~-----------------s--~~~l~~~~~~~~~~~~~s------~~v~~las~~~~~~V~s~s~-~t 333 (838)
..-.....+..+. . .+.++.. +.+....-+. ..+++++.+++|..+..|.. ++
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~-~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK-TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc-ccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 0000111111110 0 0111110 1111111122 45788888999998888764 78
Q ss_pred EEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--
Q 003217 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-- 411 (838)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-- 411 (838)
|-++++++|-..+.|..... +..++..++.....+..+.+..+|+...|.
T Consensus 472 Id~fNmQSGi~r~sf~~~~a----------------------------h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPA----------------------------HKGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred EEEEEcccCeeecccccCcc----------------------------ccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 99999999988777731110 001111112222223345566677777765
Q ss_pred cCcccc---CCCceEEEEEcC-CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEE
Q 003217 412 KGGFGD---DNRRTEALTTSI-DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 412 ~g~~~~---~~~~v~ala~S~-dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlW 484 (838)
+..+.. -...+..+.... .+.++.+.+|-.|++.|+ +-+..+.|.||++.|++++ +||++|++++.|++||+|
T Consensus 524 ~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 524 KKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred CcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 111111 112223333322 345778888999999999 7788999999999999875 589999999999999999
Q ss_pred eCC-CcccccccccccCEEEEE--eCCCEEEEEcCC-CCeeeee
Q 003217 485 DLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH-GGIRGWN 524 (838)
Q Consensus 485 D~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D-gtIrlWd 524 (838)
|+- +.++-.+.- ..+..+|. +.|++|+|..-| ..|.+|-
T Consensus 604 Dlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 604 DLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 976 777766643 34555555 688999999988 7899997
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.4e-13 Score=138.36 Aligned_cols=272 Identities=16% Similarity=0.146 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
....|+.|++-|.+||+|..||.|.+||+.+. .....+.+|..+|+|+++|+||+ |+|+|.|..|++||+.
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 34889999999999999999999999999985 45567889999999999999998 7899999999999996
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
.+.....+... ..+.+....|...-++++.-- ...-.+-+...+.. .+|..
T Consensus 96 ~gs~l~rirf~-------------------spv~~~q~hp~k~n~~va~~~---------~~sp~vi~~s~~~h-~~Lp~ 146 (405)
T KOG1273|consen 96 KGSPLKRIRFD-------------------SPVWGAQWHPRKRNKCVATIM---------EESPVVIDFSDPKH-SVLPK 146 (405)
T ss_pred CCCceeEEEcc-------------------CccceeeeccccCCeEEEEEe---------cCCcEEEEecCCce-eeccC
Confidence 65422111000 000111111111222222110 00001111111000 11110
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc------ccCC-CceE
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF------GDDN-RRTE 423 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~------~~~~-~~v~ 423 (838)
+.+.... .+.+ ...|...+..+++|+..|-..+-...++ .-.. ..|.
T Consensus 147 ------------d~d~dln-------~sas-------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK 200 (405)
T KOG1273|consen 147 ------------DDDGDLN-------SSAS-------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIK 200 (405)
T ss_pred ------------CCccccc-------cccc-------cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeee
Confidence 0000000 0000 0123444567788887775555432111 1111 4456
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcCC-----CC-----eeeEeec---CCccE-EEEEEcCCEEEEEee-CCeEEEEeCC
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDPN-----GN-----RLQDFQY---LPFAV-QCLCTFGSQIWVGYM-NGIVQVLDLE 487 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~~-----g~-----~l~tl~~---H~~~V-~sls~dG~~LasGs~-DgtIrlWD~~ 487 (838)
.+.++..|. ++.-+.|..||.+++. |+ ..+.++. -..+= .|++-+|.++.+|+. -..++||...
T Consensus 201 ~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 201 QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred EEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 677888887 7899999999999863 21 1111211 01111 134457889988874 6799999987
Q ss_pred -Ccccccccccc-cCEEEEEeCCCE--EEEEcCCCCeeeeecCC
Q 003217 488 -GNLLGGWVAHS-SPVIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 488 -g~~i~~l~gH~-~~V~sla~dg~~--l~S~S~DgtIrlWdl~s 527 (838)
|.+++.|.|.. .....|.+++-. ++|. ..|+|++|....
T Consensus 281 ~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 281 IGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 89999998887 456667777653 5555 678999999654
No 143
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=4.9e-14 Score=147.76 Aligned_cols=257 Identities=13% Similarity=0.133 Sum_probs=159.7
Q ss_pred EEeccccccEEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003217 235 LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (838)
Q Consensus 235 ~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~ 312 (838)
..|.||+..|.+++=.|.. .++|||.||.||+||+....+..++.. | .+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-------------------H----------~G 110 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-------------------H----------EG 110 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-------------------c----------cC
Confidence 4568999999999999976 378999999999999976554443332 2 22
Q ss_pred CeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeeccc-CcccccccceeeEEEecCCCCcceeeeeE
Q 003217 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
-|+-++.+. +..+.+|.|++|+.|.+.- .+++++-+++.+. .++... ...+.-.. ..+.+|...+ +...
T Consensus 111 ~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~~~FaTcG-e~i~IWD~~R-~~Pv----- 180 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKNSVFATCG-EQIDIWDEQR-DNPV----- 180 (433)
T ss_pred ceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecccccc-ccccccccccccccC-ceeeeccccc-CCcc-----
Confidence 344455543 5566666688999998764 3556655443221 000000 00000000 0001111100 0000
Q ss_pred eecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--
Q 003217 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-- 466 (838)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls-- 466 (838)
..+.=....+.++.|+|-.+ |++|.+|++|.|+|+ ++..++.... +-.-+.|+
T Consensus 181 ---------------------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~Iswn 238 (433)
T KOG0268|consen 181 ---------------------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWN 238 (433)
T ss_pred ---------------------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecC
Confidence 00111123456778888765 677879999999999 6766554432 11223444
Q ss_pred EcCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhcc
Q 003217 467 TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542 (838)
Q Consensus 467 ~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r 542 (838)
|.+-.+.+|++|..+..+|.. ...+.+..+|.++|.+|.+ -|+-++|||.|++|||+.+.-. .+|
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-----------~SR 307 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-----------HSR 307 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC-----------cch
Confidence 444578889999999999987 5689999999999999985 5778999999999999986532 234
Q ss_pred ccccccccceeeEEEEEEeCCC
Q 003217 543 EFLYTRMENLKILAGTWNVGQG 564 (838)
Q Consensus 543 ~~~y~~~~~~~i~~~twNv~~~ 564 (838)
+.+|+..- -+++..-|.+..+
T Consensus 308 diYhtkRM-q~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 308 DIYHTKRM-QHVFCVKYSMDSK 328 (433)
T ss_pred hhhhHhhh-heeeEEEEecccc
Confidence 44444322 2477777777644
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.8e-13 Score=152.77 Aligned_cols=233 Identities=19% Similarity=0.196 Sum_probs=166.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
+..-+.++++|+|..|.+++.||.||+|+..... +...++.-|...|.+++.... .|++|+.+++|.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCC
Confidence 6678889999999999999999999999976531 122222227788888887653 69999999999999886
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-cEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-tI~lWD~~tg~~l~~l~ 349 (838)
..+..- -+. ..+-.++.++++.+|..++.|++. .|++-++.+....+++
T Consensus 85 s~~~~~-------iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 85 SGEEDT-------ILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred CCCccc-------eee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-
Confidence 533210 001 114467888888888898888864 6777776544333332
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
.+|...|.+|.++|
T Consensus 135 ------------------------------------------------------------------rgh~apVl~l~~~p 148 (933)
T KOG1274|consen 135 ------------------------------------------------------------------RGHDAPVLQLSYDP 148 (933)
T ss_pred ------------------------------------------------------------------cccCCceeeeeEcC
Confidence 23445566788888
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeec-------CCccEEE-EE--EcCCEEEEEeeCCeEEEEeCCC-ccccccc-
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQC-LC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGWV- 495 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~-------H~~~V~s-ls--~dG~~LasGs~DgtIrlWD~~g-~~i~~l~- 495 (838)
.+. |++.+.||+|++||+ ++.+..++.+ ....|.+ ++ ++|..+++-..|++|++++..+ .....+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 887 688889999999999 7888877764 1123332 33 4677788888999999999884 3333332
Q ss_pred -ccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 496 -AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 496 -gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
-|+..+..+. +.|+||++++.||.|-|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3344355555 5799999999999999999876
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.55 E-value=1.3e-11 Score=134.44 Aligned_cols=330 Identities=17% Similarity=0.208 Sum_probs=197.2
Q ss_pred ccccCCCCCCCceeecCC-------CCCccccCceeEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCC
Q 003217 107 VRAALHPARPPSLEVKPH-------PLRETQIGCFLRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (838)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~ 178 (838)
.+.++...+|+-+.+=-. |..-.+..-+..++-.... .+.+..-+.+.+|+++.......
T Consensus 170 ~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~------------ 237 (626)
T KOG2106|consen 170 LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR------------ 237 (626)
T ss_pred eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE------------
Confidence 455666666664444221 2222222223333333344 44456788999998865432211
Q ss_pred CCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe
Q 003217 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG 258 (838)
Q Consensus 179 ~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg 258 (838)
...|.. -. ..-|+||+|.++|. ++||.++|.|-+|+..+. +...+-.+|.+.|.+++.-.+|+|+||
T Consensus 238 --~~~fek-~e-kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--------~~~k~~~aH~ggv~~L~~lr~GtllSG 304 (626)
T KOG2106|consen 238 --QGIFEK-RE-KKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--------RISKQVHAHDGGVFSLCMLRDGTLLSG 304 (626)
T ss_pred --eecccc-cc-ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--------eEEeEeeecCCceEEEEEecCccEeec
Confidence 111211 11 34699999998776 569999999999998664 344444599999999999999999999
Q ss_pred eCCCcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEE
Q 003217 259 SEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (838)
Q Consensus 259 S~DgtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~l 336 (838)
+.|..|-+||-.-.+ ....+..+ .+.++.++-+..+ +..|. .+.|.-
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~-----------------------------~G~iRtv~e~~~d--i~vGTtrN~iL~ 353 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQ-----------------------------FGPIRTVAEGKGD--ILVGTTRNFILQ 353 (626)
T ss_pred CccceEEeccccccccccccCchh-----------------------------cCCeeEEecCCCc--EEEeeccceEEE
Confidence 999999999932111 11111110 2234555544333 33332 233333
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc-
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF- 415 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~- 415 (838)
=.++++--+.++ +|+.-...+ ...+...+.++...+...++|.+..+
T Consensus 354 Gt~~~~f~~~v~-gh~delwgl-------------------------------a~hps~~q~~T~gqdk~v~lW~~~k~~ 401 (626)
T KOG2106|consen 354 GTLENGFTLTVQ-GHGDELWGL-------------------------------ATHPSKNQLLTCGQDKHVRLWNDHKLE 401 (626)
T ss_pred eeecCCceEEEE-ecccceeeE-------------------------------EcCCChhheeeccCcceEEEccCCcee
Confidence 333333322222 222110011 11122223344444544444432111
Q ss_pred -cc-CCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC--Cc
Q 003217 416 -GD-DNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--GN 489 (838)
Q Consensus 416 -~~-~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~--g~ 489 (838)
.. -...+.++.|.|-|.++.|+..|.--+.|.+.+.+-++...+.+++++ +++|.+||.|+.|+.|.||-+. |.
T Consensus 402 wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 402 WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 11 123566888999999999999998888888555444444347788877 4689999999999999999865 54
Q ss_pred c-cccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 490 L-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 490 ~-i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
. .+.-+-|-.+|+.+.+ |++++.+-|.|--|-.|.
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 3 2322333378888874 899999999999999993
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.5e-13 Score=145.97 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=156.4
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCC----CCCCCCCCcee
Q 003217 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKS----KGEDGTAPFKE 186 (838)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~ 186 (838)
.|.-|-|+|-.-+|+.+...|.++ .+|+ |..|-|||+.-...... -+.+|.. ........+..
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyv----------AiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~~~~ 239 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYV----------AIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRSNSA 239 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceE----------EEeccCceeEEecccccccccc--ceeechhhhhhhhhhccccccc
Confidence 566666666666665555544443 4454 88999999953221111 0123311 11111111222
Q ss_pred eecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCc
Q 003217 187 SVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGG 263 (838)
Q Consensus 187 ~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~Dgt 263 (838)
+.| +..|..|++...- ..|||||.|.||++||++++ ++..++..|.+.|.++.|.|.- . |+|||.|++
T Consensus 240 ~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 240 SGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred ccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 334 7788888887543 68999999999999999998 6677888899999999999975 3 899999999
Q ss_pred EEEEECCCc---ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEe
Q 003217 264 IKIWPWEAI---EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWD 338 (838)
Q Consensus 264 IrvWd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD 338 (838)
|++.|.... ...+++ .++|-.++-.+.. ....++. +++++-.|
T Consensus 311 V~l~D~R~~~~s~~~wk~--------------------------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKF--------------------------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred EEeeeccCccccCceEEe--------------------------------ccceEEEEecCCCceeEEEecCCceEEeee
Confidence 999998531 111111 2233333333221 2223333 46788888
Q ss_pred ccCc-cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcccc
Q 003217 339 ARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (838)
Q Consensus 339 ~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (838)
++.- +++.++..|.+
T Consensus 359 ~R~~~~~vwt~~AHd~---------------------------------------------------------------- 374 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDD---------------------------------------------------------------- 374 (463)
T ss_pred cCCCCCceeEEEeccC----------------------------------------------------------------
Confidence 8763 55444443322
Q ss_pred CCCceEEEEE--cCCCcEEEEECCCeEEEEcCCCCeeeEeecCC---ccEEEEEEcC---CEEEEEeeCCeEEEEeCC
Q 003217 418 DNRRTEALTT--SIDGMIWTGGANGLLLQWDPNGNRLQDFQYLP---FAVQCLCTFG---SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 418 ~~~~v~ala~--S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~---~~V~sls~dG---~~LasGs~DgtIrlWD~~ 487 (838)
.|..|.+ ...+.+.++++|++|++|++.+..-+....|. +...|++++. -.++.|+..+.++|||..
T Consensus 375 ---~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 375 ---EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ---CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 1122222 22456889999999999998543222222222 2344555542 388889998899999975
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.9e-12 Score=149.53 Aligned_cols=251 Identities=17% Similarity=0.240 Sum_probs=173.6
Q ss_pred CCCcCcccccCCCcccccCcccccC---CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEe-cCCCEEEEeCCCCc
Q 003217 87 SSSLPEYIGKGGDIPMFKPPVRAAL---HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELY 162 (838)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g-~d~~vrvWd~~~~~ 162 (838)
..+-.|||-.+|.+|. ||.+- ..+.|+.+.. .|.++..+++....|.++ .+++|.+|.+..+.
T Consensus 21 ~d~~gefi~tcgsdg~----ir~~~~~sd~e~P~ti~~---------~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGD----IRKWKTNSDEEEPETIDI---------SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred EcCCCCEEEEecCCCc----eEEeecCCcccCCchhhc---------cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3566789988888776 44432 3356666554 456899999998877775 57899999997755
Q ss_pred cccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc
Q 003217 163 DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (838)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~ 242 (838)
..+. .++| +-|+.+++|+.+|+++|.||.|-.|++-++.+. .....++||.+
T Consensus 88 ~~~i--------------L~Rf------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~~~lrgh~a 139 (933)
T KOG1274|consen 88 EDTI--------------LARF------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQEKVLRGHDA 139 (933)
T ss_pred ccce--------------eeee------eccceEEEEecCCcEEEeecCceeEEEEecccc--------chheeecccCC
Confidence 4321 2233 558999999999999999999999999999886 56788999999
Q ss_pred cEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC
Q 003217 243 PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH 321 (838)
Q Consensus 243 ~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~ 321 (838)
+|.+|.|+|.|. |++.+-||.|++|+++++....++..-.. .+.+. .+.-+..++..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------~n~~~--~s~i~~~~aW~P 198 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------DNEFI--LSRICTRLAWHP 198 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------ccccc--ccceeeeeeecC
Confidence 999999999999 68999999999999987654433322110 01110 012233455566
Q ss_pred CCCEE-EEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 322 SRAKV-WSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 322 ~~~~V-~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
+++.+ +.+.+++|++++..+.+....|..+.
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~------------------------------------------------ 230 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL------------------------------------------------ 230 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeecccc------------------------------------------------
Confidence 65544 44557888888877766544432110
Q ss_pred ecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE
Q 003217 401 GAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT 467 (838)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~ 467 (838)
+...+..+.+||.|+ |++++.||.|-|||++.-..+.+ ...|+|+++
T Consensus 231 -----------------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~---~~~Vc~~aw 278 (933)
T KOG1274|consen 231 -----------------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEF---KRAVCCEAW 278 (933)
T ss_pred -----------------cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccc---cceeEEEec
Confidence 111245678999998 89999999999999954211221 245666654
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.52 E-value=2.6e-13 Score=151.06 Aligned_cols=259 Identities=15% Similarity=0.182 Sum_probs=158.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcce--eEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeec
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGE--VLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~--~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
-.+||.+-.||.|.++|...-. ...++ ...|.+|.++|..+.+-| |+ |++++.|.|||+||+.+....-.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~----fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~- 137 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIV----FRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG- 137 (720)
T ss_pred cceEEEecCCCceeeecchhhh----cchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc-
Confidence 4689999999999999976632 11111 355789999999999999 75 79999999999999976432110
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEec-CCceE
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI-DGQIE 355 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~-~~~~~ 355 (838)
. . ..+| ...++.+++.+.+..|++.+ |+.|.|||++-... ..+.- ...+
T Consensus 138 -----~-~----------~~GH----------~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-d~~e~~~~~~- 189 (720)
T KOG0321|consen 138 -----R-L----------NLGH----------TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-DALEEFDNRI- 189 (720)
T ss_pred -----e-e----------eccc----------ccccchhhhccCCCcceeeccCCCcEEEEEEeccch-hhHHHHhhhh-
Confidence 0 0 0012 44577777777666555443 67899999864321 11100 0000
Q ss_pred EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEE
Q 003217 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWT 435 (838)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~S 435 (838)
...... . .... +..++ ....+.++. +++ ...|+.+.|-++..|+|
T Consensus 190 ---~~~~n~--~-ptps-----kp~~k------------r~~k~kA~s---------~ti---~ssvTvv~fkDe~tlaS 234 (720)
T KOG0321|consen 190 ---YGRHNT--A-PTPS-----KPLKK------------RIRKWKAAS---------NTI---FSSVTVVLFKDESTLAS 234 (720)
T ss_pred ---hccccC--C-CCCC-----chhhc------------ccccccccc---------Cce---eeeeEEEEEeccceeee
Confidence 000000 0 0000 00000 000000000 011 12356677777778999
Q ss_pred EEC-CCeEEEEcC-CCCe------eeEe--ecC---CccEEEEEEc--CCEEEEEeeCCeEEEEeCCC---ccccccccc
Q 003217 436 GGA-NGLLLQWDP-NGNR------LQDF--QYL---PFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG---NLLGGWVAH 497 (838)
Q Consensus 436 gs~-DgtIrlWD~-~g~~------l~tl--~~H---~~~V~sls~d--G~~LasGs~DgtIrlWD~~g---~~i~~l~gH 497 (838)
+++ |++||+||+ +..+ ++.. ..| ...+.+|..| |.+|.+.+.|++|.+||+.+ .....+.+|
T Consensus 235 aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 235 AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 887 999999998 4322 2222 223 2346677665 78888878899999999863 356666666
Q ss_pred ccC---EEE-EEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 498 SSP---VIK-MAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 498 ~~~---V~s-la~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
... |.+ +.+|+.+++||+.|..+.+|.+.++..
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 432 333 347999999999999999999887553
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.8e-13 Score=149.41 Aligned_cols=263 Identities=19% Similarity=0.320 Sum_probs=157.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...|..++|.+-...|++++.||++++|++..........++.+.+|.||.++|.|++++++++ ++||+.||+||.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 5578888888888899999999999999994322122356788999999999999999999998 899999999999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.... .+...+-.. .+ .+.-.-+...+..++.+....++.+++ |+|+++|+...... .+|
T Consensus 374 p~n~-----dp~ds~dp~--------vl------~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 374 PPNQ-----DPDDSYDPS--------VL------SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred CCCC-----CcccccCcc--------hh------ccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 4211 111000000 00 000001144555677776666677665 78999999876655 444
Q ss_pred ecCCceE--EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 349 NIDGQIE--NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 349 ~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
....... .++++ ...+..... .+...++.. + .+...+..+
T Consensus 434 ~~~~e~g~Plsvd~-----------------~ss~~a~~~----------------~s~~~~~~~---~-~~~ev~s~~- 475 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDR-----------------TSSRPAHSL----------------ASFRFGYTS---I-DDMEVVSDL- 475 (577)
T ss_pred CCccccCCcceEee-----------------ccchhHhhh----------------hhccccccc---c-hhhhhhhhe-
Confidence 3211100 00000 000000000 000000000 0 000000000
Q ss_pred EcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE-E-EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL-C-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 427 ~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl-s-~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
+++-.+.+...+.. ..++-+ + +.+.+.+++..|++|+++|.. ++++....+|-..|++
T Consensus 476 -----~~~~s~~~~~~~~~--------------~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 476 -----LIFESSASPGPRRY--------------PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred -----eeccccCCCccccc--------------CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence 01111111111111 112222 2 235678888999999999976 8999999999999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 504 MAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 504 la~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++. .|-++++++.|+.|++|.+..+.+
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchhe
Confidence 986 456899999999999999866544
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=7.7e-12 Score=129.16 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=81.1
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 003217 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaSGs~DGtIrv 217 (838)
.++++.+ ++|.+|+|||+.+...... .++..+ .| .++|..+.+.+ =|+.||+.|+|+++++
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~Ts~Wr--ah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWS-------------CTSSWR--AH-DGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceE-------------EeeeEE--ec-CCcEEEEEecCccccceEEEEecCCceee
Confidence 4888888 5699999999744322111 011111 23 78999999965 3799999999999999
Q ss_pred EECCCCcc-CCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCC
Q 003217 218 WKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 218 Wd~~~g~~-~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~ 271 (838)
|.-....- -.......+.++.--+..|+.|.|.|- |- |++++.||++||++.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 97521100 011344556667778899999999996 43 79999999999999743
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.46 E-value=2.2e-12 Score=143.57 Aligned_cols=261 Identities=14% Similarity=0.198 Sum_probs=185.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.|..++|-|||..|+.+..| .+-++|.+.| ....+++||++.|++|+++.||+ ++||+.|+.|-||+-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCc--------ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 78899999999888776654 5679999988 67889999999999999999998 68999999999998521
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecC
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+..+.+ .+...+.|+.+.+....+++++-..+-+|....+.+.+.-
T Consensus 85 -EG~LkY------------------------------SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k--- 130 (1081)
T KOG1538|consen 85 -EGILKY------------------------------SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK--- 130 (1081)
T ss_pred -cceeee------------------------------ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh---
Confidence 111111 1144577888888888888877666778887655442210
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-----cCccc---cCCCceE
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFG---DDNRRTE 423 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~---~~~~~v~ 423 (838)
... + ..+...-.++...++|+.+|.+.+.. ++... +.+..|.
T Consensus 131 -ss~-----------------R------------~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 131 -SSS-----------------R------------IICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred -hhe-----------------e------------EEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 000 0 00011112234456777777665543 12222 3567888
Q ss_pred EEEEcCCC------cEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCCccccccc
Q 003217 424 ALTTSIDG------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 424 ala~S~dg------~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (838)
+++++|.. .++...-..|+..+.+.|+.+..-..-.-.-.|+ .++|.++..|+.|+.+.++-.+|-.+.++.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg 260 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG 260 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeecc
Confidence 89988752 3566666678888888886654211111112355 458999999999999999999998888888
Q ss_pred ccccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
-...+||+++ +++++++-|..||||-.+++.
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8889999997 688899999999999999964
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.5e-11 Score=123.13 Aligned_cols=180 Identities=19% Similarity=0.267 Sum_probs=126.2
Q ss_pred ceeEEEEecCCEEEEecCCCEEEEeCCCCcc-ccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEEQLWAGGENGLRVWNLKELYD-ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
-+++.++.+++.|.++.|+.||=|.-.+... ..+ .+-=+...|++. .+. ...|.+|-++|..+-|..++
T Consensus 63 gpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFAG 133 (325)
T ss_pred CCeeeeeeehhheeeccCceEEEeeehhhhhhccc--------hhhhhhcCccccCccc-CCccceeEeccCCCcEEEec
Confidence 4688899999899999999999997754322 111 011122233322 112 44689999999888888888
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE-ecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
-|+.+..||+++| +..++++||++.|.+++- +.+++++||++|||+||||..++++...+.... +..
T Consensus 134 GD~~~y~~dlE~G--------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-~~~--- 201 (325)
T KOG0649|consen 134 GDGVIYQVDLEDG--------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK-NPN--- 201 (325)
T ss_pred CCeEEEEEEecCC--------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc-Chh---
Confidence 9999999999998 677889999999999998 778899999999999999998866543332110 000
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
.+|-+ . ..-+-+++. +...+.+|+...+.||.+++-++..+|..
T Consensus 202 ------~lRp~---~------g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 202 ------LLRPD---W------GKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ------hcCcc---c------CceeEEEec--cCceEEecCCCceeEEeccCCCceEEEec
Confidence 01101 0 112344444 45677788877899999999888777753
No 153
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.46 E-value=1.4e-11 Score=132.05 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=167.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.-.|+.+.++++...+++++.|-.||+|..... .+......|.++|+.+...|.|+ |+++|.|++...-|.
T Consensus 261 ~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 261 TKKITSVKFHKDLDTVITASADEIIRVWSVPLS--------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred ceEEEEEEeccchhheeecCCcceEEeeccccc--------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 668999999999999999999999999998775 45566789999999999999998 899999999988888
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++........+. . .-++.+.++.++|-.+.++. ++.+++||+.++..+..|
T Consensus 333 ~~g~~lt~vs~~~---------------------s------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 333 SSGSQLTVVSDET---------------------S------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred cCCcEEEEEeecc---------------------c------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 7654332221110 0 11356677877777776666 578999999988776666
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------Cccc-cCCCc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFG-DDNRR 421 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~-~~~~~ 421 (838)
.+|... +.++.|.+++-...+++.++..++|.. .++. .+...
T Consensus 386 pght~~-------------------------------vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 386 PGHTGP-------------------------------VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred CCCCCc-------------------------------eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence 665433 234567777766677777774444441 1121 23346
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcCC---CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDPN---GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~~---g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (838)
+.++.|++-|+ |++++.|=.|.+.+-. -.++.++..|.+..+++.+ .-+++++|+.|..++|+-+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88899999888 6677655455555532 2678888889988888877 3569999999999988753
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.1e-13 Score=159.60 Aligned_cols=243 Identities=16% Similarity=0.203 Sum_probs=173.9
Q ss_pred CeEEEEEcCCCC----EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEE
Q 003217 193 SVMCMVGDEASG----VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~----~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrv 266 (838)
.-++|+|.+-|. +||.|..||.|.+||...-. .+.....+.+..-|+++|.+|.|++.+. |+||+.||.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhc--cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456788876554 59999999999999976520 0122234556788999999999999865 789999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeCC-CcEEEEeccCccE
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGF-LSFALWDARTREL 344 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s~-~tI~lWD~~tg~~ 344 (838)
||+...+..++.. ...+..+|++++-...- ..+++++. +.+.|||++..+.
T Consensus 144 WDlnn~~tP~~~~---------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG---------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eccCCcCCCCCCC---------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence 9996533222110 00124566666653322 24555554 4788999987655
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+..|..++. ...+..
T Consensus 197 ii~ls~~~~-----------------------------------------------------------------~~~~S~ 211 (1049)
T KOG0307|consen 197 IIKLSDTPG-----------------------------------------------------------------RMHCSV 211 (1049)
T ss_pred ccccccCCC-----------------------------------------------------------------ccceee
Confidence 433321110 011234
Q ss_pred EEEcCCC--cEEEEECCC---eEEEEcC--CCCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 425 LTTSIDG--MIWTGGANG---LLLQWDP--NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 425 la~S~dg--~l~Sgs~Dg---tIrlWD~--~g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
|++.|+. +|++++.|. .|.+||+ ....++++++|...|.+++. |..+|+|++.|+.|.+|+.+ |+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 5666665 477777654 7999998 36788999999999999965 55799999999999999998 788999
Q ss_pred ccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCCCC
Q 003217 494 WVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 494 l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+..-.+++..+.+ ++..++.++-||.|-|..+...+
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9888899999986 55678889999999999987643
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.44 E-value=3.5e-11 Score=135.47 Aligned_cols=315 Identities=15% Similarity=0.149 Sum_probs=182.3
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEECC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG---VVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~---~LaSGs~DGtIrvWd~~ 221 (838)
+.-|....|-+||-.+.... ....+| .++|.|+.+=|..+ .++||+.||.|++|.+.
T Consensus 28 vafGa~~~Iav~dp~k~~i~-------------------t~l~GH-~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~ 87 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKILIV-------------------TTLDGH-VARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLR 87 (764)
T ss_pred EEecCCceEEEeCcccceeE-------------------EeccCC-ccceEEEEEcccccccceEEEccCCCcEEEEEEe
Confidence 33377889999997653111 011233 88999999998877 79999999999999998
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe-eCCCcEEEEECCCcc--e--eee----------c--CC-Cce
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIE--K--ALS----------L--KP-EER 283 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~~~~--~--~~~----------~--~~-~~~ 283 (838)
.. .+..+.++++|...+.++. ..-.+.++ +.|+++.+|+.+..+ . .+. + .. ...
T Consensus 88 ~~------~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 88 DE------YLIKIYTIQGHCKECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT 159 (764)
T ss_pred eh------heEEEEeecCcceeEEEEE--eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCc
Confidence 42 2356778889877766553 33233333 789999999984322 0 011 1 11 111
Q ss_pred eeeEEEEeeceeecccceeccce---eee--ecCCeEEEEEcCC---CCEEEEeC-CCcEEEEeccCccEEEEEecCCce
Q 003217 284 HTAALIVERSYIDLRSHLSVNGF---SSI--LTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQI 354 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~---~~~--~s~~v~~las~~~---~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~ 354 (838)
...+.....-.+.+.+.. ...+ +.+ +..-++.+++... ...|+|++ |..||||.+.-+..... .
T Consensus 160 ~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~------~ 232 (764)
T KOG1063|consen 160 FLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS------N 232 (764)
T ss_pred EEEEecCcceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc------c
Confidence 111111111122222111 0000 000 1233555555432 33666666 67899998753221110 0
Q ss_pred EEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cE
Q 003217 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MI 433 (838)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l 433 (838)
+ .+.. .....+... |. ...+ -.+++....-+.+|...|.++.+.|++ .|
T Consensus 233 ~--------------~e~~----~t~~~~~~~----f~------~l~~--i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 233 E--------------REDS----LTTLSNLPV----FM------ILEE--IQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred c--------------cccc----cccccCCce----ee------eeee--EEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 0 0000 000000000 00 0000 002222222344677788888899999 59
Q ss_pred EEEECCCeEEEEcCC---CC-----eeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC--C--ccccccccccc
Q 003217 434 WTGGANGLLLQWDPN---GN-----RLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--G--NLLGGWVAHSS 499 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~~---g~-----~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~--g--~~i~~l~gH~~ 499 (838)
+|+|+|.++.+|... |- ++..+.|....-... ++++..|++-+..|..++|-.+ + .+.....||.+
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 999999999999872 32 333333333333332 4567788888889999999843 2 35667789999
Q ss_pred CEEEEEeC--CCEEEEEcCCCCeeeee
Q 003217 500 PVIKMAVG--AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 500 ~V~sla~d--g~~l~S~S~DgtIrlWd 524 (838)
.|..|+++ |.+++|+|.|.|-|++-
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeec
Confidence 99999976 88999999999999964
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.43 E-value=2.5e-11 Score=124.29 Aligned_cols=245 Identities=17% Similarity=0.188 Sum_probs=164.1
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCC-------cEEEEECCCCcc-CCCCCcceeEEec-cccccEEEEEEecCCC-EEEee
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDG-------RIMCWKMNARLL-DSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DG-------tIrvWd~~~g~~-~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS 259 (838)
.+.|..++-+|.. ++|+|...|. .+-+|.+..... .....++++..|. .|-+.|.+|.|.|++. |++-
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm- 141 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM- 141 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-
Confidence 6789999999854 6666665532 577999876421 1112344444453 4567999999999997 5543
Q ss_pred CCCcEEEEECCCcceeee-cC-CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEE
Q 003217 260 EGGGIKIWPWEAIEKALS-LK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~-~~-~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lW 337 (838)
.|..|-+|+++...+... +. .+...+. +....|..+ | .+++..|++.++.++..|
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~-------------~~ftsg~Ws-p---------HHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMR-------------HSFTSGAWS-P---------HHDGNQVATTSDSTLQFW 198 (370)
T ss_pred ccCceEEEEcccCcchheeeccccccccc-------------ceecccccC-C---------CCccceEEEeCCCcEEEE
Confidence 489999999976443111 00 0000000 000111110 1 246677888888999999
Q ss_pred eccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcccc
Q 003217 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (838)
|++|-.+....+ ..
T Consensus 199 D~RT~~~~~sI~------------------------------------------------------------------dA 212 (370)
T KOG1007|consen 199 DLRTMKKNNSIE------------------------------------------------------------------DA 212 (370)
T ss_pred Eccchhhhcchh------------------------------------------------------------------hh
Confidence 998754321110 01
Q ss_pred CCCceEEEEEcCCCc--EEEEECCCeEEEEcC--CCCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--C
Q 003217 418 DNRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G 488 (838)
Q Consensus 418 ~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g 488 (838)
|...|..+-|.|+.+ |++|+.||.||+||. +...++++.+|+.+|++|-+. .+.|.+|++|..|.||... .
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 233445566667665 789999999999999 357899999999999999764 5689999999999999621 0
Q ss_pred ----------------------------cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeec
Q 003217 489 ----------------------------NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 489 ----------------------------~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl 525 (838)
.++.++.-|.+.|+++++ |+=.++|.|.||.+.|=.+
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 135578889999999986 6667889999999877443
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.4e-12 Score=140.40 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=157.0
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
.+...++||++.|.+|..+|.|. |+|||.||+||||.+.|+.|..+...
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------------ 440 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------------ 440 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------------
Confidence 33456799999999999999998 89999999999999988766443321
Q ss_pred cCCeEEEEEcCCCC--EEEEeCCCcEEEEeccCccEEEEEecCCceEEee--ecccCccccc--------ccceeeEEEe
Q 003217 311 TSDIKNLLSDHSRA--KVWSAGFLSFALWDARTRELLKVFNIDGQIENRV--DMSLLPDFAM--------EDEFKTKIVT 378 (838)
Q Consensus 311 s~~v~~las~~~~~--~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~--~~s~~~~~~~--------~~~~~~~~~s 378 (838)
.+.|++++..+... .|+.+....+.|-+..=|..+..-....-....+ .....+...+ +..+++.+
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-- 518 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-- 518 (733)
T ss_pred cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--
Confidence 12355555554332 2333333334444433332111100000000000 0000000011 00111111
Q ss_pred cCCCCcceeeeeEeecCcceeeecCC-cE--EEEec--c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-
Q 003217 379 SSKKDKAQSSFGFFQRSRNAIMGAAD-AV--RRVAA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~-~v--~~v~~--~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~- 447 (838)
+..+.+..+....++....+-..+ +. ..+.. + -.|....+.|.++.|.|-.- ++.++ ...||+||+
T Consensus 519 --~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~ 595 (733)
T KOG0650|consen 519 --KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS 595 (733)
T ss_pred --ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehh
Confidence 112333344444444433322221 11 11111 1 12333445677888887654 66655 556999999
Q ss_pred CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEeCCCE--EEEEcCCCCee
Q 003217 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGAGY--IFTLANHGGIR 521 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg~~--l~S~S~DgtIr 521 (838)
.++.++.+.....+|.+++. .|..|+.|+.|+.+..+|+. .+..+++..|...|.+|++++++ ++|||.|+++.
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 77777777777778888765 58899999999999999976 67999999999999999999885 77999999999
Q ss_pred eeecCCC
Q 003217 522 GWNVTSP 528 (838)
Q Consensus 522 lWdl~s~ 528 (838)
|+--..+
T Consensus 676 Vfhg~VY 682 (733)
T KOG0650|consen 676 VFHGMVY 682 (733)
T ss_pred EEeeeee
Confidence 9874444
No 158
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=1.7e-12 Score=147.38 Aligned_cols=216 Identities=15% Similarity=0.241 Sum_probs=150.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
++.+.|-+||+.....- ....-|.+ | ...|.|+.|++- -.+|.|||.||+||+||+...
T Consensus 107 s~nG~i~vWdlnk~~rn--------------k~l~~f~E--H-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRN--------------KLLTVFNE--H-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred cCCCcEEEEecCccccc--------------hhhhHhhh--h-ccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 56889999999652110 00112444 2 678999999864 489999999999999999875
Q ss_pred CCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+...++.+-..+|..|.|+|- +. ++++.+.|.+++||+..-... ...+.+|
T Consensus 167 -----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------~~k~~AH---- 219 (839)
T KOG0269|consen 167 -----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------EKKLTAH---- 219 (839)
T ss_pred -----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------HHHhhcc----
Confidence 456677888899999999984 33 789999999999999542110 1112233
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
.+.|.|+--.|.+..|++|+ |++|+|||..+++.-.....+
T Consensus 220 ------~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-------------------------------- 261 (839)
T KOG0269|consen 220 ------NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-------------------------------- 261 (839)
T ss_pred ------cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--------------------------------
Confidence 56788888888888899888 789999999865431111000
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEE--CCCeEEEEcCCC--CeeeEeec
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGG--ANGLLLQWDPNG--NRLQDFQY 457 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs--~DgtIrlWD~~g--~~l~tl~~ 457 (838)
....|..|.+-|+- .|++++ .|-.|.+||+.- -.-.+|..
T Consensus 262 ----------------------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 262 ----------------------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ----------------------------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 00111122333332 255555 377899999954 45688999
Q ss_pred CCccEEEEEEcC---CEEEEEeeCCeEE
Q 003217 458 LPFAVQCLCTFG---SQIWVGYMNGIVQ 482 (838)
Q Consensus 458 H~~~V~sls~dG---~~LasGs~DgtIr 482 (838)
|...|+.++.++ ..+|+++.||+|.
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHH
Confidence 999999998864 3899999999875
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.42 E-value=2.2e-11 Score=135.11 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=90.7
Q ss_pred ceEEEEEcC--CCcEEEEECCCeEEEEcCC--C------CeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC
Q 003217 421 RTEALTTSI--DGMIWTGGANGLLLQWDPN--G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 421 ~v~ala~S~--dg~l~Sgs~DgtIrlWD~~--g------~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~ 487 (838)
.|..+.+.| +.+|+.+++||.|++|.++ | ..-..+++|...|+++-+. ...|++++.|-||+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 466677766 3469999999999999982 3 2346678999999999764 4689999999999999997
Q ss_pred -CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 488 -GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++....|.||++.|.++++ ||+.++|.+.||+||+++-++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 7788899999999999995 899999999999999998654
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.41 E-value=1.4e-10 Score=127.68 Aligned_cols=236 Identities=22% Similarity=0.358 Sum_probs=170.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc-cEEEEEE-ecCCC-E-EE-eeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCI-SSYGD-L-WS-GSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~-~V~slaf-s~dG~-L-~S-gS~DgtIr 265 (838)
...+.++.+++.+..+..++.|+.+.+|+...+. .....+.++.. .+..+.+ ++++. + .. ++.|+.++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 6789999999999999999999999999998851 25666777544 7888888 77776 4 34 44599999
Q ss_pred EEECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCc
Q 003217 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (838)
Q Consensus 266 vWd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg 342 (838)
+|+... ......+. .| ...+..+.+.+.+..+++++ +..+++|++.++
T Consensus 138 ~~~~~~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 138 LWDLSTPGKLIRTLE-------------------GH----------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEEecCCCeEEEEEe-------------------cC----------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 999865 21111111 11 33455667777666555554 678999999875
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
..+..+.. |...+
T Consensus 189 ~~~~~~~~-------------------------------------------------------------------~~~~v 201 (466)
T COG2319 189 KPLSTLAG-------------------------------------------------------------------HTDPV 201 (466)
T ss_pred ceEEeecc-------------------------------------------------------------------CCCce
Confidence 55444322 22334
Q ss_pred EEEEEcCCCc-EE-EEECCCeEEEEcC-CCCeee-EeecCCcc-EEEEEEcCCEEEEEeeCCeEEEEeCCC-c-cccccc
Q 003217 423 EALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQ-DFQYLPFA-VQCLCTFGSQIWVGYMNGIVQVLDLEG-N-LLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~-Sgs~DgtIrlWD~-~g~~l~-tl~~H~~~-V~sls~dG~~LasGs~DgtIrlWD~~g-~-~i~~l~ 495 (838)
..++++|++. ++ +++.|++|++||. .+.++. .+.+|... +.++.+++..+++++.|+.+++||... . .+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 4566667774 44 4488999999998 588888 68888887 555667788888999999999999873 2 244447
Q ss_pred ccccCEEEEEeC--CCEEEEEcCCCCeeeeecCCCC
Q 003217 496 AHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 496 gH~~~V~sla~d--g~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+|...|.++.+. +..+++++.|+.+++|++....
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 899999998864 5788889999999999876543
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.41 E-value=3.7e-10 Score=123.24 Aligned_cols=266 Identities=15% Similarity=0.184 Sum_probs=163.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
..|....|.|.+..|..-.-.|.+-.|+.+++. -++....|++| +..|.||+|.++|+.+||..+|+|-||+..
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~-----l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS-----LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG 275 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCc-----eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence 367888999977555555556889999998862 23344456666 578999999999999999999999999985
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
+..-.... +.+ .+.|.+|+.-.+| ++.||+ |..|.+||- .-+.++..+
T Consensus 276 ~~~~~k~~---------------------~aH--------~ggv~~L~~lr~G-tllSGgKDRki~~Wd~-~y~k~r~~e 324 (626)
T KOG2106|consen 276 TNRISKQV---------------------HAH--------DGGVFSLCMLRDG-TLLSGGKDRKIILWDD-NYRKLRETE 324 (626)
T ss_pred CceEEeEe---------------------eec--------CCceEEEEEecCc-cEeecCccceEEeccc-ccccccccc
Confidence 42211110 111 3345556655444 445555 678999992 221111111
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEeccC----ccccCCCceEE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG----GFGDDNRRTEA 424 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~~g----~~~~~~~~v~a 424 (838)
...+. . .+| .+... ...+++|+... +..-.... ...+|......
T Consensus 325 lPe~~-----------G----~iR--tv~e~--------------~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 325 LPEQF-----------G----PIR--TVAEG--------------KGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred Cchhc-----------C----Cee--EEecC--------------CCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 11110 0 000 01111 01122332211 11111111 12245556667
Q ss_pred EEEcCCC-cEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCE
Q 003217 425 LTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPV 501 (838)
Q Consensus 425 la~S~dg-~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V 501 (838)
++..|+. ++++++.|+++++|+ +-+.+-+.. -.+++.|+.+ .| .||.|+..|..-|.|.+.+.+.+..--+.++
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l 450 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQL 450 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc-CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCce
Confidence 7877764 589999999999999 333322211 1356667765 46 9999999999999999865433333236778
Q ss_pred EEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 502 IKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 502 ~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+. ++|.+++-||.|+.|.++.+..
T Consensus 451 s~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 451 SVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 7776 6899999999999999998754
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.40 E-value=2.1e-11 Score=131.61 Aligned_cols=272 Identities=15% Similarity=0.138 Sum_probs=166.6
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC--CEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg--~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrv 266 (838)
.+.|+|++|.|.- ++|++|.+-|.|-+||+.+.. ........+..|.++|++|.|+|.. ++++.|.|||||+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 6789999999954 699999999999999996421 1223456688999999999999976 4899999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~- 344 (838)
=|+++......+..... ... ...+-+......|..+. .+.+.+||++++.-
T Consensus 262 ~D~~~~i~e~v~s~~~d-------------------~~~--------fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTD-------------------NIW--------FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeecchhhHHHhhcCcc-------------------cee--------eeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 99976332111111000 000 01111222333444444 46788999988653
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCc----
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGG---- 414 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~---- 414 (838)
...+..|.+-++.+++.+.... ..++++.|...++|. +..
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~------------------------------~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPW------------------------------FLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred chhhhhhhcccceeecCCCCch------------------------------heeecccCcceeeeehhhhcCCCCccee
Confidence 2222333333334444432211 112233333333332 111
Q ss_pred cccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCC--C---CeeeEeecCCc----cEEEE----EEcCCEEEEEeeCCe
Q 003217 415 FGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN--G---NRLQDFQYLPF----AVQCL----CTFGSQIWVGYMNGI 480 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~--g---~~l~tl~~H~~----~V~sl----s~dG~~LasGs~Dgt 480 (838)
...|...|.+..|||.| +|++.+.|..|||||.. + ..+.++ .|++ +++-+ .++-.+|++|-.-..
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcc
Confidence 23578889999999965 69999999999999983 2 222333 3432 33333 235669999999889
Q ss_pred EEEEeCCC-ccccccccccc-CEEEEE-eCC--CEEEEEc-CCCCeeeee
Q 003217 481 VQVLDLEG-NLLGGWVAHSS-PVIKMA-VGA--GYIFTLA-NHGGIRGWN 524 (838)
Q Consensus 481 IrlWD~~g-~~i~~l~gH~~-~V~sla-~dg--~~l~S~S-~DgtIrlWd 524 (838)
|-++|.++ +.+..+..... .|.++- +++ ..+++|+ ..|.|.+|.
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999985 55666655554 565553 444 3355554 445566654
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=126.20 Aligned_cols=253 Identities=14% Similarity=0.180 Sum_probs=168.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC----CCCCcceeEEecc-ccccEEEEEEe-------cCCCE-EEeeC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD----SDDGFGEVLSWQA-HRGPVLSLCIS-------SYGDL-WSGSE 260 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~----~~~~~~~~~~l~g-H~~~V~slafs-------~dG~L-~SgS~ 260 (838)
...+.++|||..|.+-+.|...++|++...... ....+....+++= -...|..-++= |+..| ++.|.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345789999999999999999999998643110 0011111111111 12345555442 44455 58889
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec-
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA- 339 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~- 339 (838)
|.-|++||.-+++...++..-. +... -....+|+++++|..|++|-..+|+++|+
T Consensus 132 ~~PIh~wdaftG~lraSy~~yd-------------------h~de-----~taAhsL~Fs~DGeqlfaGykrcirvFdt~ 187 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYD-------------------HQDE-----YTAAHSLQFSPDGEQLFAGYKRCIRVFDTS 187 (406)
T ss_pred cCceeeeeccccccccchhhhh-------------------hHHh-----hhhheeEEecCCCCeEeecccceEEEeecc
Confidence 9999999997765433332111 1111 11235788999999999988789999998
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
++|....+.. ...+.+ .+..
T Consensus 188 RpGr~c~vy~-----------------------------t~~~~k-------------------------------~gq~ 207 (406)
T KOG2919|consen 188 RPGRDCPVYT-----------------------------TVTKGK-------------------------------FGQK 207 (406)
T ss_pred CCCCCCcchh-----------------------------hhhccc-------------------------------cccc
Confidence 5554321110 000000 0112
Q ss_pred CceEEEEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEee-CCeEEEEeCC--Cccc
Q 003217 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE--GNLL 491 (838)
Q Consensus 420 ~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~--g~~i 491 (838)
..+.+++++|-. .++.|+--.++-|+.- .+..++.+-+|.+.|+-+ ..||.+|.+|+. |-.|-+||+. +..+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 234566777743 4788887777877776 567889999999999987 459999999995 8899999987 5678
Q ss_pred ccccccccCE-----EEEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 492 GGWVAHSSPV-----IKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 492 ~~l~gH~~~V-----~sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
-.|..|.+.- ..+.++++.|+||++||.|++||+..++.
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 8898887732 23456789999999999999999887543
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=149.44 Aligned_cols=267 Identities=18% Similarity=0.195 Sum_probs=166.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+|++||..|.+|++|+.|..+|||.++++ .+..+..||.+.|+.++.+.+.. ++++|.|..||||.+
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 789999999999999999999999999999997 67788999999999999998776 689999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.++...- .+++| ++.|+.+++++-. .++.++|+++||.+ -..+. +.
T Consensus 262 ~~~~pvs-------------------vLrgh----------tgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~-y~ 307 (1113)
T KOG0644|consen 262 PDGAPVS-------------------VLRGH----------TGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI-YV 307 (1113)
T ss_pred CCCchHH-------------------HHhcc----------ccceeeeccCccc---cCCCCCceEecccc-ccccc-cC
Confidence 6643211 13344 5667778887633 33446899999987 11111 11
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
+... .+.. . . ..-++-|-.++....+|+.++..+.+.-..+..+...+.-+..+.
T Consensus 308 prp~-----~~~~--~-~-----------------~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ss 362 (1113)
T KOG0644|consen 308 PRPL-----KFTE--K-D-----------------LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSS 362 (1113)
T ss_pred CCCC-----Cccc--c-c-----------------ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccc
Confidence 0000 0000 0 0 000000111111112232222211111000111111111122222
Q ss_pred C--CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Ccccc-cccccccCE
Q 003217 430 D--GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPV 501 (838)
Q Consensus 430 d--g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V 501 (838)
| ...+++-.+.-+++|++ +|..++.+.+|...+..+-+ +.+...+++.||.+-|||.. |-.++ -+.+|...|
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee
Confidence 2 12345555677899999 89999999999998887754 34466688899999999975 65433 346787777
Q ss_pred EEE-EeCCCEEEEEcCCCCeeeee
Q 003217 502 IKM-AVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 502 ~sl-a~dg~~l~S~S~DgtIrlWd 524 (838)
.+- ..||+.++-....|.+.+..
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEec
Confidence 653 35777666555556666655
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.39 E-value=9.4e-10 Score=121.04 Aligned_cols=272 Identities=22% Similarity=0.365 Sum_probs=178.1
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCc-cccccccccccCCCCCCCCCCceeeecCCCCeEEEEE-cCCCC-EEE
Q 003217 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-DEASG-VVW 207 (838)
Q Consensus 134 ~~~~l~~~~~--~l~~-g~d~~vrvWd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~-s~dg~-~La 207 (838)
.+..+..... .+.. +.|+.+.+|+..... .... +.. .+ ...+..+.+ ++++. .+.
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----------------~~~-~~-~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS-----------------LEG-LH-DSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE-----------------Eec-cC-CCceeeEEEECCCcceEEe
Confidence 4445554433 3333 459999999986543 1110 000 00 114555555 77777 555
Q ss_pred EEeC-CCcEEEEECCC-CccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC-CCcEEEEECCCcceeeecCCCce
Q 003217 208 SGHR-DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPEER 283 (838)
Q Consensus 208 SGs~-DGtIrvWd~~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~-DgtIrvWd~~~~~~~~~~~~~~~ 283 (838)
..+. |+.+++|+... . .....+.+|...|.+++|+|++. +++++. |+++++|++........+..
T Consensus 128 ~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPG--------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--- 196 (466)
T ss_pred ccCCCCccEEEEEecCCC--------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---
Confidence 5444 99999999987 3 56777899999999999999997 677775 99999999965222111110
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEE-eCCCcEEEEeccCccEEE-EEecCCceEEeeec
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS-AGFLSFALWDARTRELLK-VFNIDGQIENRVDM 360 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s-~s~~tI~lWD~~tg~~l~-~l~~~~~~~~~~~~ 360 (838)
+...+..++..+.+. .+.+ +.+++|++||..++.++. .+..+.
T Consensus 197 --------------------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~-------- 242 (466)
T COG2319 197 --------------------------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-------- 242 (466)
T ss_pred --------------------------CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC--------
Confidence 134556666665555 4445 346789999887666544 222111
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGAN 439 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~D 439 (838)
..+ ...+++++ .+++++.|
T Consensus 243 -----------------------------------------------------------~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 243 -----------------------------------------------------------DSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred -----------------------------------------------------------cce-eEeECCCCCEEEEecCC
Confidence 000 00356666 46789999
Q ss_pred CeEEEEcCC-CCe-eeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCC-ccccccc--ccccCEEEEEeC--CCE
Q 003217 440 GLLLQWDPN-GNR-LQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLGGWV--AHSSPVIKMAVG--AGY 510 (838)
Q Consensus 440 gtIrlWD~~-g~~-l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g-~~i~~l~--gH~~~V~sla~d--g~~ 510 (838)
+.+++||.. ... +..+.+|...|.++.+. +..+++++.|+.+++||... ....... +|...|..+.+. +..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred CcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCE
Confidence 999999994 333 55557889999988664 57888888899999999873 4444444 888888888762 135
Q ss_pred EEEE-cCCCCeeeeecCCCC
Q 003217 511 IFTL-ANHGGIRGWNVTSPG 529 (838)
Q Consensus 511 l~S~-S~DgtIrlWdl~s~~ 529 (838)
++.+ ..|+.+++|++....
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeecCCCcEEeeecCCCc
Confidence 5554 788999999976543
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.39 E-value=1.7e-11 Score=132.93 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=148.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.-.||++.....++.+|+..++|++||+... ...+.+++|+..|++|.+.-... |+++|..|-|-|-.+.+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK--------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH--------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 4567777667789999999999999999863 33456899999999999987655 99999999999999987
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeCC-CcEEEEeccCccEEEEEe
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFN 349 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s~-~tI~lWD~~tg~~l~~l~ 349 (838)
+.+.-.+...... .++.|-.++... .+.+++| ++|.|||+.....+..+.
T Consensus 153 ~~~tt~f~~~sgq----------------------------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~ 204 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQ----------------------------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS 204 (673)
T ss_pred CccccceecCCCC----------------------------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh
Confidence 6554433221111 133444444333 3445555 678999986433321110
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
..|......+.|+|
T Consensus 205 ------------------------------------------------------------------~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 205 ------------------------------------------------------------------EAHSAPCRGICFSP 218 (673)
T ss_pred ------------------------------------------------------------------hhccCCcCcceecC
Confidence 01111122345655
Q ss_pred CC--cEEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC--cccccccccccCEE
Q 003217 430 DG--MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVI 502 (838)
Q Consensus 430 dg--~l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~ 502 (838)
-. .+++.+.|..|.+||.. .+....+.. ..+..+|++ +|.+|++|+..|.|.-||+.+ .++.++.+|...|.
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred CccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence 43 36899999999999994 444444443 445556654 799999999999999999985 47999999999999
Q ss_pred EEEeCCC
Q 003217 503 KMAVGAG 509 (838)
Q Consensus 503 sla~dg~ 509 (838)
+|++...
T Consensus 298 ~vafq~s 304 (673)
T KOG4378|consen 298 RVAFQPS 304 (673)
T ss_pred EEEeeec
Confidence 9997543
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.4e-11 Score=131.25 Aligned_cols=240 Identities=17% Similarity=0.239 Sum_probs=169.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
.++|.||.|.|...+|.+|+.||++|++.+++.. ++ .++++.=-.-||.+.+|.|+|+ +++++.-...-.||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~----N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc----Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 5689999999999999999999999999998742 11 2233222367999999999997 68999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+++.+-. .+.+. .++ ....+.....++++..|+..+ .+-|.|.-+.|++++.+
T Consensus 287 le~ak~~-k~~~~----------------~g~---------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 287 LETAKVT-KLKPP----------------YGV---------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ccccccc-cccCC----------------CCc---------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 9774321 11110 011 011234455566777666655 45688888888887766
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+...+ .|..+.|
T Consensus 341 ~KieG--------------------------------------------------------------------~v~~~~f 352 (514)
T KOG2055|consen 341 FKIEG--------------------------------------------------------------------VVSDFTF 352 (514)
T ss_pred eeecc--------------------------------------------------------------------EEeeEEE
Confidence 64322 1334566
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc---cEEEEEEcCCEEEEEeeCCeEEEEeCC-----C--ccccccc
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF---AVQCLCTFGSQIWVGYMNGIVQVLDLE-----G--NLLGGWV 495 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~---~V~sls~dG~~LasGs~DgtIrlWD~~-----g--~~i~~l~ 495 (838)
+.||+ ||+.+.+|.|.+||+ ...|++.+....+ .-.|++.+|+++|+||..|.|.|||.+ + +++.++.
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 67776 778888999999999 5689999874221 122556789999999999999999953 2 4677777
Q ss_pred ccccCEEEEEe--CCCEEE--EEcCCCCeeeeecCCCCC
Q 003217 496 AHSSPVIKMAV--GAGYIF--TLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~--S~S~DgtIrlWdl~s~~~ 530 (838)
.-+..|.+|.+ |.+.|+ |-..+..+|+=.+.+.+.
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 77788999886 566665 444677888877655433
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.37 E-value=1.4e-11 Score=130.17 Aligned_cols=239 Identities=19% Similarity=0.295 Sum_probs=155.6
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcc--------CCCCCcceeEEeccccccEEEEEEec--CCCEEEe
Q 003217 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLL--------DSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSG 258 (838)
Q Consensus 191 ~~~V~~la~s~dg--~~LaSGs~DGtIrvWd~~~g~~--------~~~~~~~~~~~l~gH~~~V~slafs~--dG~L~Sg 258 (838)
.+.+.-+..++-| -+.+|=+..|.|.||++..-.. -....++++.++.+|.+.=++|.||| +|.|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 4455566666544 5666677889999999864320 11245677889999999999999999 6779999
Q ss_pred eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEE
Q 003217 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFAL 336 (838)
Q Consensus 259 S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~l 336 (838)
.--+.|++|...++. ..+.. .. +.+| +..|--|.-++ ....++|++ |++|+|
T Consensus 231 Dc~~~I~lw~~~~g~--W~vd~--~P------------f~gH----------~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGS--WKVDQ--RP------------FTGH----------TKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccccceEeeeeccCc--eeecC--cc------------cccc----------ccchhhhccCCccCceEEeeecCceEEE
Confidence 888999999986532 21110 00 0011 22233333333 234556666 789999
Q ss_pred EeccCccE---EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC
Q 003217 337 WDARTREL---LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (838)
Q Consensus 337 WD~~tg~~---l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (838)
||++.+.. +.+ .
T Consensus 285 WDiRs~~~~~~~~~-k---------------------------------------------------------------- 299 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-K---------------------------------------------------------------- 299 (440)
T ss_pred EEecCCCccceeEe-e----------------------------------------------------------------
Confidence 99987632 111 1
Q ss_pred ccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCC----CCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEe
Q 003217 414 GFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 414 ~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~----g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD 485 (838)
.|...|+.+.++.+- .|+||+.||+++|||+. ++.+.+|+.|..+|+||... ...|++++.|..|.|||
T Consensus 300 ---Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 300 ---AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ---ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 112223344444433 48999999999999983 57899999999999999764 56889999999999999
Q ss_pred CCC--c-------ccc--------cccccc--cCEEEEEeC---CCEEEEEcCCCCeeeee
Q 003217 486 LEG--N-------LLG--------GWVAHS--SPVIKMAVG---AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 486 ~~g--~-------~i~--------~l~gH~--~~V~sla~d---g~~l~S~S~DgtIrlWd 524 (838)
+.- . -.. -|--|. ..|..|.++ +.+++|.+.|| +.||.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 631 1 011 122343 245556654 55788988887 34443
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.36 E-value=7.9e-11 Score=122.35 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=141.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--ccc---cEEEEEEecCCCEEEeeCCCcEEEEECCC-cc
Q 003217 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRG---PVLSLCISSYGDLWSGSEGGGIKIWPWEA-IE 273 (838)
Q Consensus 200 s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--H~~---~V~slafs~dG~L~SgS~DgtIrvWd~~~-~~ 273 (838)
.|+..++++.+.|.-|++||.-+| +...++.+ |.. +-.||+|+|||.-+-++...+||++|+.. +.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG--------~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG--------KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCccceeeeccccCceeeeecccc--------ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 367788999999999999999998 44444443 433 34689999999855566778999999843 22
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeCC-CcEEEEeccCccEEEEEecC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNID 351 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (838)
.. .. ...+ .++.... .+-+.++++++-.. .++.+++ +.+-|+.-..+.++.++.
T Consensus 192 ~c-~v------y~t~--------~~~k~gq-------~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-- 247 (406)
T KOG2919|consen 192 DC-PV------YTTV--------TKGKFGQ-------KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-- 247 (406)
T ss_pred CC-cc------hhhh--------hcccccc-------cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec--
Confidence 11 00 0000 0000000 22244566655443 4444443 222222222222222221
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
+|...|+.|.+-+||
T Consensus 248 -----------------------------------------------------------------gh~gGvThL~~~edG 262 (406)
T KOG2919|consen 248 -----------------------------------------------------------------GHGGGVTHLQWCEDG 262 (406)
T ss_pred -----------------------------------------------------------------ccCCCeeeEEeccCc
Confidence 333445566777777
Q ss_pred c-EEEEEC-CCeEEEEcC--CCCeeeEeecCCc----cEE-EEEEcCCEEEEEeeCCeEEEEeCC--CcccccccccccC
Q 003217 432 M-IWTGGA-NGLLLQWDP--NGNRLQDFQYLPF----AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSP 500 (838)
Q Consensus 432 ~-l~Sgs~-DgtIrlWD~--~g~~l~tl~~H~~----~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~ 500 (838)
. +.||+. |-.|-+||+ .+..+-.+..|.. +|. .+.+.|++|++|+.||.|++||++ |+...++..|++.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 6 888873 557999999 3567777777765 333 346679999999999999999997 6788999999999
Q ss_pred EEEEEeCCC--EEEEEcCC
Q 003217 501 VIKMAVGAG--YIFTLANH 517 (838)
Q Consensus 501 V~sla~dg~--~l~S~S~D 517 (838)
|+.++.++- .++++|..
T Consensus 343 vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccceecCcccceeeeccCc
Confidence 999997765 45666654
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=7e-10 Score=122.78 Aligned_cols=267 Identities=12% Similarity=0.182 Sum_probs=151.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ccc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNA-RLL 225 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~-g~~ 225 (838)
+.+++|++||+.+.-.... ...+...+....++++|++++|+.++ .++.|.+|++.. +.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~------------------~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~- 69 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTL------------------LQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA- 69 (330)
T ss_pred CCCCCEEEEEECCCCceee------------------eeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-
Confidence 4588999999953211110 01111123566789999999987765 578899999863 21
Q ss_pred CCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceec
Q 003217 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (838)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 303 (838)
+...... .+.+....|+|+|+|+ |++++ .++.|.+|++++....... ... +.+
T Consensus 70 -----l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~---------~~~---- 124 (330)
T PRK11028 70 -----LTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI---------IEG---- 124 (330)
T ss_pred -----eEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee---------ccC----
Confidence 1111111 1233567899999998 66555 5899999998632111000 000 000
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCC
Q 003217 304 NGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (838)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (838)
......++.++++..++.+. ++.|.+||+.+...+..... .. ...
T Consensus 125 -------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--~~----------------------~~~-- 171 (330)
T PRK11028 125 -------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--AE----------------------VTT-- 171 (330)
T ss_pred -------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC--Cc----------------------eec--
Confidence 01223445666777776554 46899999976322110000 00 000
Q ss_pred CCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC-CCeEEEEcCC---C--CeeeE
Q 003217 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---G--NRLQD 454 (838)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~~---g--~~l~t 454 (838)
.. ......++++|||+ ++++.. +++|.+||++ | +.+++
T Consensus 172 -----------------~~------------------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 172 -----------------VE------------------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred -----------------CC------------------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 00 01123467889988 556664 8899999983 3 23444
Q ss_pred eecCC------ccEE--EEEEcCCEEEEEee-CCeEEEEeCC--Cccccccccccc---CE--EEEEeCCCEEEEEc-CC
Q 003217 455 FQYLP------FAVQ--CLCTFGSQIWVGYM-NGIVQVLDLE--GNLLGGWVAHSS---PV--IKMAVGAGYIFTLA-NH 517 (838)
Q Consensus 455 l~~H~------~~V~--sls~dG~~LasGs~-DgtIrlWD~~--g~~i~~l~gH~~---~V--~sla~dg~~l~S~S-~D 517 (838)
+..+. .... .+.++|++|+++.. +++|.+|+++ +.. .++.+|.. .. ..+.+||++|+.+. .+
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 43221 1222 34578999999864 7899999974 221 12223321 12 23446899988665 58
Q ss_pred CCeeeeecCC
Q 003217 518 GGIRGWNVTS 527 (838)
Q Consensus 518 gtIrlWdl~s 527 (838)
++|.+|++..
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999998753
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.5e-10 Score=123.60 Aligned_cols=271 Identities=14% Similarity=0.220 Sum_probs=184.3
Q ss_pred eeEEEEecCC-E--EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceee--ecCCCCeEEEEEcCCCC-EEE
Q 003217 134 FLRTIVCTEE-Q--LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASG-VVW 207 (838)
Q Consensus 134 ~~~~l~~~~~-~--l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~g~~~V~~la~s~dg~-~La 207 (838)
.++++..+.. + |.+|.|+++|+|-++.-.- |+..+ +. ..||.|..|.|+|. .|+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~l~-~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIHLE-KFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeeeec-cCccceeeecCCCceEEE
Confidence 4666666644 3 3348899999998853111 11122 33 77999999999998 999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
+++.-.....||+.+.. +..+..+.||. ..+.....|+++. |+..+..|.|.|--..+++...++..
T Consensus 275 ~s~rrky~ysyDle~ak------~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----- 343 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAK------VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----- 343 (514)
T ss_pred ecccceEEEEeeccccc------cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-----
Confidence 99999999999999863 12233345664 5677888999998 78899999998877655442222111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
.+.+..+++++++.+||++ +++.|.+||+++..+++.|..++.+
T Consensus 344 -------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---------- 388 (514)
T KOG2055|consen 344 -------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---------- 388 (514)
T ss_pred -------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----------
Confidence 2234455555666666654 5788999999999888776533221
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
.-++++.|++|. +++||..|.|-
T Consensus 389 --------------------------------------------------------~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 389 --------------------------------------------------------HGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred --------------------------------------------------------ceeeeeecCCCceEEeccCcceEE
Confidence 012455667776 78999999999
Q ss_pred EEcCCC-------CeeeEeecCCccEEEEEE--cCCEEEEEee--CCeEEEEeCCC-ccccccccc---ccCEEEEEe--
Q 003217 444 QWDPNG-------NRLQDFQYLPFAVQCLCT--FGSQIWVGYM--NGIVQVLDLEG-NLLGGWVAH---SSPVIKMAV-- 506 (838)
Q Consensus 444 lWD~~g-------~~l~tl~~H~~~V~sls~--dG~~LasGs~--DgtIrlWD~~g-~~i~~l~gH---~~~V~sla~-- 506 (838)
|||.+. +.+.++..-...|+++.+ |++.||.+|. +..+||--+.. .....|... -+-|+||++
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 999521 455555444567777765 6778877774 78899887642 233333322 234788885
Q ss_pred CCCEEEEEcCCCCeeeeecC
Q 003217 507 GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+.+++-|-.+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 56789999999999999874
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.32 E-value=1.5e-11 Score=128.07 Aligned_cols=250 Identities=14% Similarity=0.199 Sum_probs=157.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
.-+||.|++-|.|||-|+.++ +....+.||.++|+.|.|.|+. + ++|||.|.+||+|++++..+...+-+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 357888889999999999987 5677789999999999999986 3 67999999999999987655433322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
.+ +| ...|.++-++.++.+++|++ |.++++|++.+.++-..++ .+..
T Consensus 177 ~e----------------gH----------rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~ 224 (385)
T KOG1034|consen 177 VE----------------GH----------RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE------LSIT 224 (385)
T ss_pred cc----------------cc----------cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh------hhcc
Confidence 11 12 34677788888888999888 6799999998766522221 1111
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECC
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~D 439 (838)
+++..... +-..+ .. .++. +. + -.-|...|.++-+= ...++|=|.+
T Consensus 225 ~~~~~t~~--------------pfpt~-~~-~fp~----fs-t------------~diHrnyVDCvrw~-gd~ilSksce 270 (385)
T KOG1034|consen 225 YSPNKTTR--------------PFPTP-KT-HFPD----FS-T------------TDIHRNYVDCVRWF-GDFILSKSCE 270 (385)
T ss_pred cCCCCccC--------------cCCcc-cc-cccc----cc-c------------cccccchHHHHHHH-hhheeecccC
Confidence 11111000 00000 00 0000 00 0 00122333332221 1246777778
Q ss_pred CeEEEEcC-C-CC-------------eeeEeecCCccEEEE--EEc--CCEEEEEeeCCeEEEEeCCC-cc--ccccccc
Q 003217 440 GLLLQWDP-N-GN-------------RLQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLEG-NL--LGGWVAH 497 (838)
Q Consensus 440 gtIrlWD~-~-g~-------------~l~tl~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~g-~~--i~~l~gH 497 (838)
+.|..|-. + ++ .+.+|......|+-+ ++| ++.||.|...|.|.+||++. .. ..++.-+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 88999976 3 22 234444455566655 444 67999999999999999973 22 2233222
Q ss_pred --ccCEEE--EEeCCCEEEEEcCCCCeeeeecC
Q 003217 498 --SSPVIK--MAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 498 --~~~V~s--la~dg~~l~S~S~DgtIrlWdl~ 526 (838)
...|.. ++.|+..|+-...|++|..||..
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 123433 44699999999999999999853
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.31 E-value=1e-10 Score=124.26 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=98.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
+++|+.++|+| +...|||||.|.+|+||.+..+. -..+..+.+..|.||+..|.-|++.|... |+|++.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcc-cccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 88999999999 45789999999999999986541 01122355678999999999999999775 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++.+++..+++. + ...+..+.+..+|..+.+.. |+.|+|||.++|+++.
T Consensus 160 nv~tgeali~l~-h-----------------------------pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 160 NVGTGEALITLD-H-----------------------------PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred eccCCceeeecC-C-----------------------------CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 999887655543 1 22345566666777666554 7899999999999865
Q ss_pred EE
Q 003217 347 VF 348 (838)
Q Consensus 347 ~l 348 (838)
.-
T Consensus 210 e~ 211 (472)
T KOG0303|consen 210 EG 211 (472)
T ss_pred ec
Confidence 43
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.30 E-value=6.6e-11 Score=120.01 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=161.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.+.|+|+.|..++ +|.+|..-|.+++|++.+. +....|+ .|+..|+.+--.|++.|.|=+.|.++.+|++
T Consensus 14 ~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 14 SSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cchheehhhccch-hhhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 6789999998655 5899999999999999986 5566777 5689999999999988999999999999998
Q ss_pred CCcc--------------eeeecCCCceeeeEEEE--eeceeecccceeccc----eeeee------cCCeEEEEEcC-C
Q 003217 270 EAIE--------------KALSLKPEERHTAALIV--ERSYIDLRSHLSVNG----FSSIL------TSDIKNLLSDH-S 322 (838)
Q Consensus 270 ~~~~--------------~~~~~~~~~~~~~~~~~--~~s~~~l~~~~~~~~----~~~~~------s~~v~~las~~-~ 322 (838)
.... +.+++.........+.. .+. .+. .|....+ ++..+ .+.+.+.--.. +
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg-sde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-SDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcc-cch-hhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 6511 11222111111100000 000 000 0000000 00000 11222222111 1
Q ss_pred -CCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee
Q 003217 323 -RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (838)
Q Consensus 323 -~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (838)
...+..++ ++.+-+||+.++..+..|.....++ .
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~----------------------~--------------------- 199 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE----------------------S--------------------- 199 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccc----------------------c---------------------
Confidence 22333344 3567788887775433332111100 0
Q ss_pred eecCCcEEEEeccCccccCCCceEEEEEcCC-CcEEEEECCCeEEEEcCC---CCe--eeEeecCCccEE--EEEEcCCE
Q 003217 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPN---GNR--LQDFQYLPFAVQ--CLCTFGSQ 471 (838)
Q Consensus 400 ~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-g~l~Sgs~DgtIrlWD~~---g~~--l~tl~~H~~~V~--sls~dG~~ 471 (838)
....|...|.+|.+.+- .+=++|+.+..+..|.++ |.+ ..+++.-.-.|. .|-+|++.
T Consensus 200 --------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 200 --------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred --------------chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence 01123344444444322 123567766678888872 432 122222222344 35679999
Q ss_pred EEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCC--CEEEEEcCCCCeeeeec
Q 003217 472 IWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRGWNV 525 (838)
Q Consensus 472 LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrlWdl 525 (838)
+|+++-|+.||||.-. .+.++.++-|.+.|+++++.+ ..++.+|.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999965 789999999999999999744 57899999999999986
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.26 E-value=2.7e-11 Score=128.65 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=121.3
Q ss_pred cccCCCceEEEEEcC--CCcEEEEECCCeEEEEcC-C-C------CeeeEeecCCccEEEEEEc---CCEEEEEeeCCeE
Q 003217 415 FGDDNRRTEALTTSI--DGMIWTGGANGLLLQWDP-N-G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIV 481 (838)
Q Consensus 415 ~~~~~~~v~ala~S~--dg~l~Sgs~DgtIrlWD~-~-g------~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtI 481 (838)
+.+|...|..+++.| |..|+|||.|.+|++|++ + | +.+..|.+|...|--+... .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 557788888888877 445899999999999998 4 3 4567788999999988764 4588999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEE
Q 003217 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGT 558 (838)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~t 558 (838)
.+||+. |..+.++. |.+.|+++.+ ||++++|.+.|+.||+||.+.......-..++-.+. ...||++.
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~--------~Raifl~~ 227 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP--------ARAIFLAS 227 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc--------ceeEEecc
Confidence 999997 66666676 9999999985 899999999999999999877555433222221111 11233333
Q ss_pred EEe---CCCCCCcccccccccCCCCCceEEEEEeecccCccchh
Q 003217 559 WNV---GQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFL 599 (838)
Q Consensus 559 wNv---~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~ 599 (838)
-++ |-.+.+..++.-|=....+.| ++|||++-+.|.+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl 267 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVL 267 (472)
T ss_pred CceeeeccccccccceeccCcccccCc----ceeEEeccCCceE
Confidence 222 112333334444545444555 7999998665543
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=120.49 Aligned_cols=258 Identities=12% Similarity=0.141 Sum_probs=164.1
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-C-C-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-G-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G-~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
..+|++-+.|.||++|..++ +....+++|...++.|.|..+ + . +.||+.||+||+||+.+..+.-.
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~--- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR--- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh---
Confidence 56899999999999999997 677889999999999999875 2 4 68999999999999976322100
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-----CcEEEEeccCccE-EEEEecCCce
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTREL-LKVFNIDGQI 354 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-----~tI~lWD~~tg~~-l~~l~~~~~~ 354 (838)
+....+ +.....+++..-.+..+.++.. -.+.+||++..+. ++.+.- .
T Consensus 110 --------------~~~~~~---------~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-S-- 163 (376)
T KOG1188|consen 110 --------------ISWTQQ---------SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-S-- 163 (376)
T ss_pred --------------eeccCC---------CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-h--
Confidence 001111 0112334444334445555543 2588999987654 333311 0
Q ss_pred EEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEec-cCc--------cccCCCceEE
Q 003217 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA-KGG--------FGDDNRRTEA 424 (838)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~-~g~--------~~~~~~~v~a 424 (838)
+...++.+.|.|... ..++|+.||...+-. ++. ...+...|..
T Consensus 164 ---------------------------H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ 216 (376)
T KOG1188|consen 164 ---------------------------HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHL 216 (376)
T ss_pred ---------------------------ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeee
Confidence 011223456776665 456788888765543 221 1124456778
Q ss_pred EEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEeec-------------CCccEEEEEE-cCCEEEEEee-CCeEEEE--
Q 003217 425 LTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQY-------------LPFAVQCLCT-FGSQIWVGYM-NGIVQVL-- 484 (838)
Q Consensus 425 la~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~-------------H~~~V~sls~-dG~~LasGs~-DgtIrlW-- 484 (838)
+.|..++ +|+.-+..++..+|+. .|.+...+.- -..-|.+.++ ++...+.++. -+...++
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 8898888 7888888999999999 5654433321 1223444555 3344444333 4444444
Q ss_pred -eCC-C---cccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 485 -DLE-G---NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 485 -D~~-g---~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|.. + +.+..+.| |...|.++.+ .+..++||+.||.+.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 322 2 45677777 6667777775 4668999999999999986
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.9e-10 Score=129.86 Aligned_cols=278 Identities=15% Similarity=0.130 Sum_probs=163.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---cccEEEEEEecCCC---EEEeeCCCcEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD---LWSGSEGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH---~~~V~slafs~dG~---L~SgS~DgtIrv 266 (838)
+-..+.|.|=...|+++...-+|++||.+.+ +....|..+ ...|+.|.+-.+-. |.+||.||.|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC--------ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 3455677776677888876778999999886 333334333 35799999876543 689999999999
Q ss_pred EECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE-cCCCCEEEEeCC-CcEEEEeccCcc
Q 003217 267 WPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAGF-LSFALWDARTRE 343 (838)
Q Consensus 267 Wd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s~-~tI~lWD~~tg~ 343 (838)
|+--. +.+.. .-+.+. ..+.++ ...+.+.. ++.. ....+.+.++++ ..|+|||+....
T Consensus 1138 wk~y~~~~~~~------eLVTaw------~~Ls~~------~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1138 WKDYADKWKKP------ELVTAW------SSLSDQ------LPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred ecccccccCCc------eeEEee------cccccc------CccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce
Confidence 97421 10100 001100 011111 00001111 2221 223345555554 689999998876
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---------Cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GG 414 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~ 414 (838)
++.-+...... .. ...+.. ...+..+..|-+||..|+... -.
T Consensus 1199 ~~~diP~~s~t---------~v---------TaLS~~-----------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1199 VVADIPYGSST---------LV---------TALSAD-----------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eEeecccCCCc---------cc---------eeeccc-----------ccCCceEEEeecCCceEEeecccCCcccccee
Confidence 65443211100 00 000110 011234566777777666541 12
Q ss_pred cccCCCc--eEEEEEcCCC--cEEEEECCCeEEEEcCCCCeeeE-e--ecCC---ccEEEEEE--cCCEEEEEeeCCeEE
Q 003217 415 FGDDNRR--TEALTTSIDG--MIWTGGANGLLLQWDPNGNRLQD-F--QYLP---FAVQCLCT--FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 415 ~~~~~~~--v~ala~S~dg--~l~Sgs~DgtIrlWD~~g~~l~t-l--~~H~---~~V~sls~--dG~~LasGs~DgtIr 482 (838)
...|+.. |..+.+-+.| .|+|||.||.|++||+.+....+ + ..|- +.++++.. +...||+|+. +.|+
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 2345544 6666665544 59999999999999996522222 2 2232 24777765 5678999988 9999
Q ss_pred EEeCCCccccccccc-------ccCEEEEEeCCCE--EEEEcCCCCeeeeecCC
Q 003217 483 VLDLEGNLLGGWVAH-------SSPVIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 483 lWD~~g~~i~~l~gH-------~~~V~sla~dg~~--l~S~S~DgtIrlWdl~s 527 (838)
||++.|+.+..++-+ .+.+.++++++.. ++.|+.|.+|.++....
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999998766555433 2456888888764 66889999999987543
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=4.6e-09 Score=121.98 Aligned_cols=352 Identities=17% Similarity=0.188 Sum_probs=178.8
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
...+..+..+.+|+..+.....+ ++.-.++|+-.+.|.+++|.++++|+|..||.|.+|.--..
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~----------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTS----------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred EEEEEEeeeEEEEEecccceeec----------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc
Confidence 33446678889999865332211 11112334556999999999999999999999999974431
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceee-----------ecCCCceeeeEEEE-
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-----------SLKPEERHTAALIV- 290 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~-----------~~~~~~~~~~~~~~- 290 (838)
. ..-.....|.=|...|++++|+++|. |+||+..+.+-+|.++++++.+ ...+... ..++..
T Consensus 238 ~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~-~~sl~~~ 312 (792)
T KOG1963|consen 238 S----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD-LYSLVLE 312 (792)
T ss_pred c----cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC-eEEEEec
Confidence 0 01122344555889999999999997 8999999999999999866432 1111111 111111
Q ss_pred eeceeecc-----cceeccceeee-------ecCCeEEEEEcC-CCCEEEEeCCCcEEEEeccCccEEEEEecC------
Q 003217 291 ERSYIDLR-----SHLSVNGFSSI-------LTSDIKNLLSDH-SRAKVWSAGFLSFALWDARTRELLKVFNID------ 351 (838)
Q Consensus 291 ~~s~~~l~-----~~~~~~~~~~~-------~s~~v~~las~~-~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~------ 351 (838)
+.++..++ ...++.|+... +..-...+..++ .+..+..+..+.|.+||+.+...+..+..-
T Consensus 313 DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 313 DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 12222221 11223333221 112234455565 444566666788999999887766544321
Q ss_pred CceE-----EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 352 GQIE-----NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 352 ~~~~-----~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+... .++..+.......--+ +++-.-...+ ....+.||+...+. .+ +.+.++- ...|.....+..
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E--~~~d~~~~~~-~e~~LKFW~~n~~~-----kt-~~L~T~I-~~PH~~~~vat~ 462 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLE--ARIDKFNFFD-GEVSLKFWQYNPNS-----KT-FILNTKI-NNPHGNAFVATI 462 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEee--eeehhhhccC-ceEEEEEEEEcCCc-----ce-eEEEEEE-ecCCCceeEEEE
Confidence 1000 0001011100000000 0000000000 01134444321100 00 0000000 012222222222
Q ss_pred -EcCC-C-cEEEEECCCeEEEEcCCC-----------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC-c
Q 003217 427 -TSID-G-MIWTGGANGLLLQWDPNG-----------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-N 489 (838)
Q Consensus 427 -~S~d-g-~l~Sgs~DgtIrlWD~~g-----------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~ 489 (838)
.++- . +.++++.||.+|+|-.++ .|...-..|..++++.++ ||+.|++ +.|++|.+||... +
T Consensus 463 ~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~ 541 (792)
T KOG1963|consen 463 FLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKN 541 (792)
T ss_pred EecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChh
Confidence 2222 2 578999999999997632 132222236777777655 6766666 5788999999764 2
Q ss_pred ccccccccc-cCEEEEEe----CCCEEEEEcCCCCeeeeecCC
Q 003217 490 LLGGWVAHS-SPVIKMAV----GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 490 ~i~~l~gH~-~~V~sla~----dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+....+-. .++..+.+ .....+....-..+.+|++-+
T Consensus 542 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 542 ELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred hhhccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 222111211 12222222 122344555667778888643
No 179
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.23 E-value=6.1e-10 Score=120.53 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=99.8
Q ss_pred CCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 003217 142 EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvW 218 (838)
+..+.+.. -|.|-+||+.+-... + ..-+....| .++|.|+.|+|.+ .+|++.|+||+||+=
T Consensus 199 ~~~lva~GdK~G~VG~Wn~~~~~~d--------------~-d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 199 NRKLVAVGDKGGQVGLWNFGTQEKD--------------K-DGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred cceEEEEccCCCcEEEEecCCCCCc--------------c-CceEEeccC-CccccceEecCCChhheeeeccCceeeee
Confidence 33555533 469999999521111 1 111222334 7899999999966 789999999999999
Q ss_pred ECCCCcc--------------------CCC-----CCc------------ceeEEeccccccEEEEEEecCCC--EEEee
Q 003217 219 KMNARLL--------------------DSD-----DGF------------GEVLSWQAHRGPVLSLCISSYGD--LWSGS 259 (838)
Q Consensus 219 d~~~g~~--------------------~~~-----~~~------------~~~~~l~gH~~~V~slafs~dG~--L~SgS 259 (838)
|+++..- +.. ..+ .+...|.-|...|++|++.|-.. |+|||
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 9887531 000 000 01122345888999999999654 89999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEe
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWD 338 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD 338 (838)
.|+|+||||+......-+ + .+. .-.| .-.|....+++.++.|++.. |..|+|||
T Consensus 343 ~D~T~kIWD~R~l~~K~s----p-~ls----------t~~H----------rrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKAS----P-FLS----------TLPH----------RRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred cCcceeeeehhhhcCCCC----c-cee----------cccc----------cceeeeeEEcCCCCceEeeccCCceEEee
Confidence 999999999965211000 0 000 0011 22456667778777666544 78999999
Q ss_pred cc
Q 003217 339 AR 340 (838)
Q Consensus 339 ~~ 340 (838)
..
T Consensus 398 ss 399 (498)
T KOG4328|consen 398 SS 399 (498)
T ss_pred cc
Confidence 74
No 180
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.22 E-value=1.2e-10 Score=121.34 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=80.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
|.-|-|||-|+.+.+..+. ++. | ..+|..+.+.|+. ++|.|||+|.+||+|++.+.
T Consensus 112 G~~GvIrVid~~~~~~~~~-----------------~~g--h-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--- 168 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-----------------YRG--H-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--- 168 (385)
T ss_pred cceeEEEEEecchhhhccc-----------------eec--c-CccchhhhcCCCCCcEEEEecCCceEEEEeccCC---
Confidence 6678999999977655432 222 3 6689999999875 79999999999999999997
Q ss_pred CCCCcceeEEe---ccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 227 SDDGFGEVLSW---QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 227 ~~~~~~~~~~l---~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.++..| .||++.|.++.|+.+|. |+|++.|.+|++|++..
T Consensus 169 -----~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 169 -----VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred -----eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 556554 68999999999999997 89999999999999974
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.20 E-value=7.1e-10 Score=113.80 Aligned_cols=230 Identities=15% Similarity=0.131 Sum_probs=146.0
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCC-------CcEEEEECCCcceeeecCCC
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG-------GGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~D-------gtIrvWd~~~~~~~~~~~~~ 281 (838)
.|+.|.+-+++.+. +. -....|..|.+.|..|+-+|-.. |+|+-.| ..+-||.+......-..
T Consensus 38 ~dNqVhll~~d~e~----s~-l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~--- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEG----SE-LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS--- 109 (370)
T ss_pred CcceeEEEEecCcc----ch-hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---
Confidence 46777777776642 11 12344677889999999998654 4554332 35678887431111000
Q ss_pred ceeeeEEEEeeceeecccceeccceeee---ecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEE-EEEecCCceEEe
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSI---LTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL-KVFNIDGQIENR 357 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~---~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l-~~l~~~~~~~~~ 357 (838)
. +..-++.+ ..+.+.|+...|++.++++..+..|.+|++..+..+ ..+......
T Consensus 110 -~------------------tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~--- 167 (370)
T KOG1007|consen 110 -S------------------TLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA--- 167 (370)
T ss_pred -c------------------hhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc---
Confidence 0 00001111 134688999999999999999999999999765431 111100000
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG 437 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs 437 (838)
+.+ ..| + .|.+..| .||..+...
T Consensus 168 -------------e~~---------------~~f--------t-----------sg~WspH----------Hdgnqv~tt 190 (370)
T KOG1007|consen 168 -------------EMR---------------HSF--------T-----------SGAWSPH----------HDGNQVATT 190 (370)
T ss_pred -------------ccc---------------cee--------c-----------ccccCCC----------CccceEEEe
Confidence 000 000 0 0111111 145544445
Q ss_pred CCCeEEEEcC-CCCeeeEe-ecCCccEEEEEEcCC---EEEEEeeCCeEEEEeCC-C-cccccccccccCEEEEEe---C
Q 003217 438 ANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCTFGS---QIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMAV---G 507 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls~dG~---~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~sla~---d 507 (838)
.|++++.||+ +-++...+ ..|...|..+.+..+ +|++|+.||.||+||.. . .++..+.+|+.+||+|.+ .
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 6899999999 55544333 368888998876533 89999999999999987 3 479999999999999986 4
Q ss_pred CCEEEEEcCCCCeeeeecCC
Q 003217 508 AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 508 g~~l~S~S~DgtIrlWdl~s 527 (838)
.+.++|+|.|..|.+|...+
T Consensus 271 dqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ceEEEecCCCceeEEEeccc
Confidence 67899999999999998654
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.19 E-value=3.9e-09 Score=122.16 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=150.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCC-CcceeEEeccccccEEEEEEecCC---CEEEeeCCCcEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDD-GFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~-~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIr 265 (838)
.++|.|+.|.| +..+|+.|+++|.|-+||+..+. .. +......-..|+.+|+.+.+..+- .++|+|.||.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~---~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGS---DTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCC---CCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 67899999998 45889999999999999998763 11 222222334689999999997642 399999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeCCCcEEEEeccCccE
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGFLSFALWDARTREL 344 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s~~tI~lWD~~tg~~ 344 (838)
.|+++...........+... + .+........+..+.+.+.. .....|++.+ .+
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~--------------~---~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G---------~v 372 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKK--------------H---KGQQSSKAVGATSLKFEPTDPNHFIVGTEEG---------KV 372 (555)
T ss_pred eeeccccccchhhccccccc--------------c---cccccccccceeeEeeccCCCceEEEEcCCc---------EE
Confidence 99875422110000000000 0 00000001112223332211 1122222211 11
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
.+ +.+++.... .. ....++ ..+.-|...|.+
T Consensus 373 ~~--------------------------------~~r~g~~~~-~~------~~~~~~----------~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 373 YK--------------------------------GCRKGYTPA-PE------VSYKGH----------STFITHIGPVYA 403 (555)
T ss_pred EE--------------------------------EeccCCccc-cc------cccccc----------ccccccCcceEe
Confidence 00 000000000 00 000000 013345667778
Q ss_pred EEEcCCCc--EEEEECCCeEEEEcCC--CCeeeEeecCCccEEEEEEcC---CEEEEEeeCCeEEEEeCCC---cccccc
Q 003217 425 LTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEG---NLLGGW 494 (838)
Q Consensus 425 la~S~dg~--l~Sgs~DgtIrlWD~~--g~~l~tl~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g---~~i~~l 494 (838)
+.++|=+. ++|++ |-+||||.-. ...+-.+..+...|++++... ..++++..||.|.+||+.- .++.+.
T Consensus 404 v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 404 VSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred eecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 88887664 34555 8899999874 456777777888899998753 4788999999999999752 345555
Q ss_pred cccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
.-+......+.+ .|+.++.|...|++.+|++.
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 555444445553 58889999999999999973
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.7e-10 Score=136.83 Aligned_cols=231 Identities=19% Similarity=0.272 Sum_probs=150.5
Q ss_pred EEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 003217 144 QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (838)
Q Consensus 144 ~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~ 220 (838)
.|++| .||.|-+||........ +...-.+...| +++|..|.|++..+ +||||+.||.|-+||+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeccccCCceEEecchhhccCc-------------chHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 46664 58999999986642111 10101122344 88999999999776 9999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
+.-. .++... -+.-...|.+|++...-. |+||+.+|.+-|||+...+..+.+......
T Consensus 147 nn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------------- 206 (1049)
T KOG0307|consen 147 NKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------------- 206 (1049)
T ss_pred CCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--------------
Confidence 8741 111111 123356799999987543 789999999999999765444444321110
Q ss_pred cceeccceeeeecCCeEEEEEcCCCC-EEEEeC-C---CcEEEEeccCcc-EEEEEecCCceEEeeecccCcccccccce
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-F---LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~---~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
..+..++-.++.. .|+.++ + -.|.+||++--. .+++
T Consensus 207 -------------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~------------------------- 248 (1049)
T KOG0307|consen 207 -------------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI------------------------- 248 (1049)
T ss_pred -------------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh-------------------------
Confidence 0112233333222 344443 2 268999986311 1111
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEECCCeEEEEcC-CC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NG 449 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g 449 (838)
+..|...|.++.+.+.+ .++|++.|+.|.+|+. +|
T Consensus 249 ------------------------------------------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 249 ------------------------------------------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ------------------------------------------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 22333334455554433 4789999999999999 79
Q ss_pred CeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCCC
Q 003217 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g 488 (838)
+.+.++-...+++..+.+ +...+++++.||.|.|+.+.+
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999888889888865 345899999999999999763
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.1e-10 Score=122.10 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
.+|+|+.+|..|++|+.||++|+|+...- ..+....+|.+.|.+|.|||||+ |+|-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 78999999999999999999999996653 44566789999999999999998 7888888 89999998863
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.17 E-value=2e-10 Score=122.70 Aligned_cols=176 Identities=19% Similarity=0.191 Sum_probs=127.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCC-CCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSD-DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~-~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
..||+.+.|.+++. .|+||+.|..||+|.++.+..... ...+....|..|..+|+.|.|+|+|. |+||+.+|.|-+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999988776 999999999999999887642111 12334456789999999999999998 6899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~ 347 (838)
...... +.|.++ +. ..
T Consensus 93 k~~~~~--------------------------------------------------------------~~~~d~-e~-~~ 108 (434)
T KOG1009|consen 93 KQGDVR--------------------------------------------------------------IFDADT-EA-DL 108 (434)
T ss_pred EecCcC--------------------------------------------------------------Cccccc-hh-hh
Confidence 752200 000011 00 00
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
..+ .|.+.. .+..|...+..+++
T Consensus 109 ---~ke--------------------~w~v~k----------------------------------~lr~h~~diydL~W 131 (434)
T KOG1009|consen 109 ---NKE--------------------KWVVKK----------------------------------VLRGHRDDIYDLAW 131 (434)
T ss_pred ---Ccc--------------------ceEEEE----------------------------------Eecccccchhhhhc
Confidence 000 000000 01224445667888
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
++|++ +++|+.|+++++||+ .|+.+..+..|...|+-++.| ++++++=+.|...+...+.
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99988 789999999999999 899999999999999999876 6799999999877777764
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.17 E-value=6.4e-11 Score=135.29 Aligned_cols=240 Identities=16% Similarity=0.210 Sum_probs=161.5
Q ss_pred eEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003217 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (838)
Q Consensus 234 ~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~ 312 (838)
+..+.||.++|.|+.|+..|. +++||.|..||||..++..+.-+ +++| ++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGh----------s~ 233 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS-------------------CRGH----------SG 233 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc-------------------CCCC----------cc
Confidence 445789999999999999998 89999999999999877544222 2344 66
Q ss_pred CeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeE
Q 003217 313 DIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
+++.++.+.....+++++ |..|++|-+.++.++.++.+|...++.+++++....+.++..+.|.+.-. . ..+
T Consensus 234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~----~---~~y 306 (1113)
T KOG0644|consen 234 DITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLE----P---RIY 306 (1113)
T ss_pred ccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccccc----c---ccc
Confidence 778888877777888887 46799999999999999998887767777777654433333332221100 0 000
Q ss_pred eecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEE---EE
Q 003217 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL---CT 467 (838)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl---s~ 467 (838)
.++- -.+.+. ..+.++.+-..+. .++|+.|++-+.|...- +..|...+.-+ +.
T Consensus 307 ~prp-----------------~~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-----l~~~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 307 VPRP-----------------LKFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQ-----LAWRSNLLIFVTRSSD 363 (1113)
T ss_pred CCCC-----------------CCcccc-cceeeeeccccccccccccCCcccccchhhH-----hhhhccceEEEecccc
Confidence 0000 001111 2233344444444 78999999888887521 11122111111 11
Q ss_pred cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
...+.+++=.+-.+.+|++. |.+.+.+.+|.+.+..+.+ ++....|++.||...|||+....|+.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 12455666678899999985 8999999999999998874 56677899999999999987666653
No 187
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.16 E-value=6.6e-10 Score=120.89 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=138.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
|..++|+|||+..-..... .+ .| .+.|+||.+.-...+||+++..|-|.+-.+.++
T Consensus 98 G~~~~Vkiwdl~~kl~hr~-----------------lk--dh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---- 153 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRF-----------------LK--DH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---- 153 (673)
T ss_pred CcCceeeehhhHHHHHhhh-----------------cc--CC-cceeEEEEecCCcceeEEeccCCcEEEEecccC----
Confidence 5688999999973222111 11 23 778999999988999999999999999999886
Q ss_pred CCCcceeEEeccc-cccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 228 DDGFGEVLSWQAH-RGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 228 ~~~~~~~~~l~gH-~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
....+|.-- ...|.-+.|++..+ |.++|.+|+|.|||+....+.+... +.|. ....
T Consensus 154 ----~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~Hs---------------AP~~ 212 (673)
T KOG4378|consen 154 ----QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHS---------------APCR 212 (673)
T ss_pred ----ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhcc---------------CCcC
Confidence 223334322 35677899999876 5799999999999997644322211 1111 1233
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
|+|+.|+.+ ..+++.+ |..|.+||........++..
T Consensus 213 gicfspsne----------~l~vsVG~Dkki~~yD~~s~~s~~~l~y--------------------------------- 249 (673)
T KOG4378|consen 213 GICFSPSNE----------ALLVSVGYDKKINIYDIRSQASTDRLTY--------------------------------- 249 (673)
T ss_pred cceecCCcc----------ceEEEecccceEEEeecccccccceeee---------------------------------
Confidence 444433332 3444444 57889999875544322211
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCC--CeeeEeecCCc
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPF 460 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g--~~l~tl~~H~~ 460 (838)
.....+|+|+++|. |+.|+..|.|..||+.+ ..+.++..|..
T Consensus 250 -----------------------------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 250 -----------------------------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred -----------------------------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 01234688999998 77888999999999954 67899999999
Q ss_pred cEEEEEEcCC-EEEE
Q 003217 461 AVQCLCTFGS-QIWV 474 (838)
Q Consensus 461 ~V~sls~dG~-~Las 474 (838)
.|++|++.-. .++.
T Consensus 295 sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 295 SVTRVAFQPSPTVLT 309 (673)
T ss_pred ceeEEEeeecceeee
Confidence 9999987533 4443
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.14 E-value=1.2e-08 Score=109.31 Aligned_cols=128 Identities=19% Similarity=0.325 Sum_probs=89.6
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeec-CCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~~~---~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~~~V~~la~s~dg~~LaS 208 (838)
++..+.+..+ .|.+ |.|..||+|-+......+. ...--|...+. |+.+|+++.|+|+|.+|||
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------DMKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------ceeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 4555555433 3343 6799999999865443321 00111222232 2889999999999999999
Q ss_pred EeCCCcEEEEECCCCc---cCC-----CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 209 GHRDGRIMCWKMNARL---LDS-----DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~---~~~-----~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
|+.+|.|.+|....-. ++. ...+.....+.+|...|..++++||+. +++||.|+++++||+..+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9999999999876210 000 111233456789999999999999998 7899999999999997654
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=8.9e-10 Score=120.05 Aligned_cols=275 Identities=17% Similarity=0.202 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCC---CEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG---DLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG---~L~SgS~DgtIrv 266 (838)
.+-|..|-|...|..|+|||.|.+|.+||...+ ...+.+ .||...|..-.|-|.. .|++++.||.||+
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhcc--------CcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 778999999999999999999999999999887 445555 5898888888887753 4999999999998
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccE
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~ 344 (838)
=.+....+.-.... +.-| .+.+..++..+... .+.+++ +..+.=.|++++..
T Consensus 214 s~i~~t~~~e~t~r----------------l~~h----------~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 214 SEILETGYVENTKR----------------LAPH----------EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred eeeccccceeccee----------------cccc----------cCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 66533111100000 0001 33455556555443 333433 56677778877655
Q ss_pred EEEEecCCceEE-eeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEec------c----
Q 003217 345 LKVFNIDGQIEN-RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA------K---- 412 (838)
Q Consensus 345 l~~l~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~------~---- 412 (838)
...+.....-.. ++.+. +++..+... ...+|..+...|+.. .
T Consensus 268 a~~~~cr~~~~~~~v~L~--------------------------~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLY--------------------------TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred cceeeeeccCCccceeee--------------------------eEecCCCCccccccCChhhhhhhhcccchhhccccc
Confidence 333321000000 00000 001111110 111222221111111 0
Q ss_pred --Cccc------cCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC---C----------CeeeE-eecCCc--cEEEEEE
Q 003217 413 --GGFG------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN---G----------NRLQD-FQYLPF--AVQCLCT 467 (838)
Q Consensus 413 --g~~~------~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~---g----------~~l~t-l~~H~~--~V~sls~ 467 (838)
..|. ...-.|++++++.++. |++.-.|.-|.++.-+ | ..++. ++||.+ .|..+.+
T Consensus 322 ~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 322 VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF 401 (559)
T ss_pred hhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee
Confidence 0111 2334678899996665 7666678789999642 4 22333 788876 4667777
Q ss_pred cC---CEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEEcCCCCeeeeec
Q 003217 468 FG---SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWNV 525 (838)
Q Consensus 468 dG---~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~S~DgtIrlWdl 525 (838)
-| .+++|||.-|.|-+||-. +++++-+.|-...|+||.+++- .|+|.+-|.-||||.-
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 66 599999999999999987 6889999998889999998776 5889999999999984
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.5e-09 Score=122.89 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=126.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE-eeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-GSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG---tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-gS~DgtIr 265 (838)
..+|.+.+|+|||+.|+..+.++ .|.+||+.++. .+.+..+.+|. .+++|+|||+ |+. .+.||.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~------~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA------RKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc------eEEEecCCCcc---CceeECCCCCEEEEEEecCCcEE
Confidence 55789999999999999887653 69999998862 12233355554 3679999998 654 45788887
Q ss_pred EEEC--CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccC
Q 003217 266 IWPW--EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART 341 (838)
Q Consensus 266 vWd~--~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~t 341 (838)
||.+ .++. ...++. + ...+.....++++..++.++ ++...||++..
T Consensus 274 Iy~~d~~~~~-~~~lt~-------------------~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 274 IYVMGANGGT-PSQLTS-------------------G----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEEECCCCC-eEeecc-------------------C----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 7754 3321 111110 0 11223345566666555443 24566666432
Q ss_pred ccE-EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCC
Q 003217 342 REL-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 342 g~~-l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
... ...+ + +..
T Consensus 324 ~~~~~~~l----------------------------------------------------~----------------~~~ 335 (429)
T PRK01742 324 SGGGASLV----------------------------------------------------G----------------GRG 335 (429)
T ss_pred CCCCeEEe----------------------------------------------------c----------------CCC
Confidence 110 0000 0 000
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEe---CCCccccccc
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLD---LEGNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD---~~g~~i~~l~ 495 (838)
..+.++|||+ |+.++.++ +.+||+ +|+.......+...-.++++||++|+.++.++.+++|+ .+|+.++.+.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 1234678887 66666666 556998 56544322222222224678999999999999888776 4588889999
Q ss_pred ccccCEEEEEeCC
Q 003217 496 AHSSPVIKMAVGA 508 (838)
Q Consensus 496 gH~~~V~sla~dg 508 (838)
+|.+.+...++.+
T Consensus 413 ~~~g~~~~p~wsp 425 (429)
T PRK01742 413 GSDGQVKFPAWSP 425 (429)
T ss_pred CCCCCCCCcccCC
Confidence 9988877766554
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.11 E-value=4.4e-09 Score=117.71 Aligned_cols=266 Identities=17% Similarity=0.170 Sum_probs=161.9
Q ss_pred eeEEEEe--cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVC--TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~--~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
++..++. ++.+|....++.+.+||..++... .|++. | ...|+||+++.||+++|||+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll-----------------qtLKg--H-KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL-----------------QPLKG--H-KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc-----------------ccccc--c-cceEEEEEEccCCceeccCCC
Confidence 5666654 577999999999999998764322 12222 3 678999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|..|.+|+..-. -++. -.|.+.|.||.|.|-.+ |+|+|-. -.-+|..+.. .+.-
T Consensus 74 DK~VI~W~~klE---------G~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K------------ 128 (1081)
T KOG1538|consen 74 DKSVIIWTSKLE---------GILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSK------------ 128 (1081)
T ss_pred ceeEEEeccccc---------ceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHh------------
Confidence 999999985431 1222 36999999999999776 8888853 2457876431 1100
Q ss_pred eeceeecccceeccce-eeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccE-EEEEec--CCceEEeeecccCccc
Q 003217 291 ERSYIDLRSHLSVNGF-SSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL-LKVFNI--DGQIENRVDMSLLPDF 366 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~-~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~-l~~l~~--~~~~~~~~~~s~~~~~ 366 (838)
+.....+ +..-+++...++.+.. ++||.|-+. +|+. ++.-.+ +...++++..++....
T Consensus 129 ---------~kss~R~~~CsWtnDGqylalG~~--------nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 129 ---------HKSSSRIICCSWTNDGQYLALGMF--------NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ---------hhhheeEEEeeecCCCcEEEEecc--------CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 0000011 1112333334443332 467776654 3433 222221 2222333333332222
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC----CceEEEEEcCCCc-EEEEECCCe
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN----RRTEALTTSIDGM-IWTGGANGL 441 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~----~~v~ala~S~dg~-l~Sgs~Dgt 441 (838)
..++.+-+..|+. ++.|+.- .|++.+.. -...++.+=++|. ++.|+.|+.
T Consensus 191 G~~di~aV~DW~q--------TLSFy~L-----------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 191 GRNDILAVADWGQ--------TLSFYQL-----------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CccceEEEEeccc--------eeEEEEe-----------------cceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 2221111111111 2333321 22222211 1122455446665 888999999
Q ss_pred EEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 442 LLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 442 IrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
++++..+|-++.|+.....+|+++. ++++.++.|..||||-.+++.
T Consensus 246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999999988888999985 578999999999999999964
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.8e-09 Score=109.61 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=85.0
Q ss_pred eeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCc--eeeecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF--KESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
|+.+|..+.+ ++.+ |.|-.++||++++...... ..|+ .++-| .+.|+||+|+..++.|+|
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------~KPI~~~~~~H-~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------PKPIGVMEHPH-RSNIFSLEFDLENRFLYS 122 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------------CCCceeccCcc-ccceEEEEEccCCeeEec
Confidence 6777877644 5544 3467999999976543211 1222 22222 689999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccc---ccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR---GPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~---~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
|..+++|.+-|+++. +.+-..+|. +.|+.|..+|-.. |++.+.++.|-+||...
T Consensus 123 G~~~~~VI~HDiEt~---------qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 123 GERWGTVIKHDIETK---------QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred CCCcceeEeeecccc---------eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 999999999999984 333344554 5999999999765 78999999999999854
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.06 E-value=1e-08 Score=122.05 Aligned_cols=250 Identities=15% Similarity=0.209 Sum_probs=145.5
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.+.|..++.++.. .+++|||.||+||+|++..-.++ ....+...++.--.+.|..+.+.+.|+ ++.|+.||.|++-+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcC-cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 6677788887654 99999999999999997542110 012233445544467899999999887 88889999999999
Q ss_pred CCCc--ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CC--CEEEEeCCCcEEEEeccCcc
Q 003217 269 WEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SR--AKVWSAGFLSFALWDARTRE 343 (838)
Q Consensus 269 ~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~--~~V~s~s~~tI~lWD~~tg~ 343 (838)
++.. .+.. .. .....-+-.++.+ +.+-++.. .+ ..|+......|..||+++..
T Consensus 1127 id~~~~~~~~-~~--~~ri~n~~~~g~v-------------------v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1127 IDHYNVSKRV-AT--QVRIPNLKKDGVV-------------------VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred ccccccccce-ee--eeecccccCCCce-------------------EEeecccccccceeEEEEEeccceEEecchhhh
Confidence 8651 1100 00 0000000000001 11111111 11 12223334567788876533
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
.+.+++ +....+.|.
T Consensus 1185 ~~w~lk-----------------------------------------------------------------~~~~hG~vT 1199 (1431)
T KOG1240|consen 1185 DAWRLK-----------------------------------------------------------------NQLRHGLVT 1199 (1431)
T ss_pred hHHhhh-----------------------------------------------------------------cCcccccee
Confidence 211110 111234567
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEee-cCCccEEEEE--E-cC--CEEEEEe--eCCeEEEEeCC-Ccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQ-YLPFAVQCLC--T-FG--SQIWVGY--MNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~-~H~~~V~sls--~-dG--~~LasGs--~DgtIrlWD~~-g~~i~ 492 (838)
+++.+|.+. +++|+..|.+.+||+. +..+.... ++..+|+-+. + -+ ..+++++ ..+-|.+|+.+ |.+..
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 888899888 7899999999999994 55555544 3445666553 3 23 4555555 46889999987 54433
Q ss_pred ccccc-----------cc------C---EEE-EEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 493 GWVAH-----------SS------P---VIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 493 ~l~gH-----------~~------~---V~s-la~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++... .+ . +.+ +...+..+++|+.|..||.||...|
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 33222 11 1 111 1123456889999999999997654
No 194
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=6.5e-08 Score=100.67 Aligned_cols=260 Identities=14% Similarity=0.140 Sum_probs=152.9
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+..|..| .||.|-+||+.+...... +.. | ..||.|+++|+||+.|.|+|.|..|++||+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~-----------------lsa--H-~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARM-----------------LSA--H-VRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhh-----------------hhc--c-ccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 4455554 599999999987543221 222 3 669999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcce-eeecCCCceeeeEEEEeeceeec
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
..|. ..+++ .| ..+|+.+.|.|-.+ . +..-.+..--+-++..... .+...
T Consensus 95 ~~gs-----~l~ri-rf---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d------------------ 147 (405)
T KOG1273|consen 95 LKGS-----PLKRI-RF---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD------------------ 147 (405)
T ss_pred cCCC-----ceeEE-Ec---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC------------------
Confidence 9873 11221 12 57899999988543 2 2222222222222211000 00000
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
..+.... .-.+..++..|..|.+|.. +-+.++|+.|-+++..|.....
T Consensus 148 ----~d~dln~----sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~----------------------- 196 (405)
T KOG1273|consen 148 ----DDGDLNS----SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV----------------------- 196 (405)
T ss_pred ----Ccccccc----ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh-----------------------
Confidence 0000000 0111234556777888876 4688999999888777653220
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---------Cccc------cCCCce--EEEEEcCCCc-EEEEE-
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GGFG------DDNRRT--EALTTSIDGM-IWTGG- 437 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~~~------~~~~~v--~ala~S~dg~-l~Sgs- 437 (838)
..+..+-+..+++..++.+.|-+.|.... +... .-..+. ..+.||.||. +..|+
T Consensus 197 -------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 197 -------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred -------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 01112344555566677777777766531 1111 001111 2477899997 43333
Q ss_pred CCCeEEEEcC-CCCeeeEeecCC-ccEEEEEEcC--CEEEEEeeCCeEEEEeCC
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFG--SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~dG--~~LasGs~DgtIrlWD~~ 487 (838)
....+.+|.- .|..++.+.|.. .....+..+. ..|++- ..|.|++|...
T Consensus 270 ~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 270 RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 4568999999 799999998866 3444555443 234443 67899999854
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=7.8e-09 Score=118.78 Aligned_cols=207 Identities=11% Similarity=-0.039 Sum_probs=123.3
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC---CcEEEEECCCcceeeecCCCceeee
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D---gtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
.+..|.+||.++. ....+..|...|.+.+|||||+ |+.++.+ ..|.+||+.+++.... ..
T Consensus 182 ~~~~i~i~d~dg~---------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~------ 245 (429)
T PRK01742 182 QPYEVRVADYDGF---------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS------ 245 (429)
T ss_pred ceEEEEEECCCCC---------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec------
Confidence 3578999998774 3455678888999999999998 7665543 4799999976532110 00
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCc--EEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS--FALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~t--I~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
+.++ ....+.++++.+|+.+. ++. |.+||+.+++.. .+..
T Consensus 246 ----------~~g~-------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~------------ 289 (429)
T PRK01742 246 ----------FRGH-------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTS------------ 289 (429)
T ss_pred ----------CCCc-------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eecc------------
Confidence 0000 11244566666555432 333 444566555431 1110
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCC
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANG 440 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~Dg 440 (838)
+...+..+.++|||. |+.++ .++
T Consensus 290 -------------------------------------------------------~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 290 -------------------------------------------------------GAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred -------------------------------------------------------CCCCcCCEEECCCCCEEEEEECCCC
Confidence 001122456888887 55444 567
Q ss_pred eEEEEcC--CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCEEEEEcCC
Q 003217 441 LLLQWDP--NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANH 517 (838)
Q Consensus 441 tIrlWD~--~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~l~S~S~D 517 (838)
...||++ .+...+.+ .+.....++++||++|+.++.++ |.+||+. |+.......+...-.+.++||++++.++.+
T Consensus 315 ~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 315 SPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 8888876 34333333 33332234577999998887765 4559987 443221122222222356799999999999
Q ss_pred CCeeeeecC
Q 003217 518 GGIRGWNVT 526 (838)
Q Consensus 518 gtIrlWdl~ 526 (838)
+++++|.+.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999999864
No 196
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=5.5e-08 Score=114.91 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=90.7
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeee-EeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCCCcccccc
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~-tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l 494 (838)
|.+.+-++.++.||. ++|.|+|.++|+|++ +++.+. +.-+|+.+|..+.+...+|++++.|.+.++|+.+++.+.++
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~~y 253 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLEVY 253 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccceehhh
Confidence 334444667778887 899999999999999 666555 66789999999888666999999999999999998888899
Q ss_pred ccccc-CEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 495 VAHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~-~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+|.. .|+.++. +.-.++|++.|+++|+|++..
T Consensus 254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99976 5888874 334678999999999999643
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.02 E-value=4e-08 Score=117.19 Aligned_cols=164 Identities=19% Similarity=0.202 Sum_probs=99.9
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+++ |.||+||+||+.+....+. ..|.. .+++.. .+.+.++..-+.|..+|.|++||.|++.+++
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~------s~rS~------ltys~~-~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGG------SARSE------LTYSPE-GSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcc------eeeee------EEEecc-CCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 4554 5699999999976443211 01111 223323 6789999999999999999999999999987
Q ss_pred CCccCCCCCcceeEEeccc-cccEEEE-EEecCC-C--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 222 ARLLDSDDGFGEVLSWQAH-RGPVLSL-CISSYG-D--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH-~~~V~sl-afs~dG-~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
--.. ......+.+....| .+.|.+| +|.... . |+-+..-+.|-.||+.......++.....
T Consensus 1129 ~~~~-~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1129 HYNV-SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred cccc-ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 6210 00001112222233 3445544 454432 2 56677778899999865433333222111
Q ss_pred cccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
++-+..++.++.+..+..|+. +.+.+||++=+.++...
T Consensus 1195 --------------hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1195 --------------HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred --------------ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 345777888887777777775 56789999877766544
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.01 E-value=1.7e-08 Score=104.06 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=82.6
Q ss_pred cCCCceEEEEEcCCCc--EEEEECCCeEEEEcCCCCeeeEe--ec--CCccEEEEEE---cCCEEEEEee-CCeEEEEeC
Q 003217 417 DDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNRLQDF--QY--LPFAVQCLCT---FGSQIWVGYM-NGIVQVLDL 486 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~~g~~l~tl--~~--H~~~V~sls~---dG~~LasGs~-DgtIrlWD~ 486 (838)
.|.+.|..++|+.++. ++|.+.||.||++|+....-.|+ +. ...+..-++. |.+++|+-.. ...|.+.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 3455667778877665 78999999999999943222222 22 1335555654 4567776544 568999998
Q ss_pred C--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCC
Q 003217 487 E--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 487 ~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s 527 (838)
. ...+..|.+|.+.|++|++ ....|.|+|.|..+-+||+..
T Consensus 274 R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 7 6789999999999999996 456899999999999999865
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.8e-09 Score=113.86 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=124.2
Q ss_pred EEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC
Q 003217 245 LSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323 (838)
Q Consensus 245 ~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~ 323 (838)
..|+|+.+|. |++|+.||++|||++......+... .| ..+|+.+.+++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------~~----------~~eV~DL~FS~dg 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------------------AH----------HAEVKDLDFSPDG 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------------------hh----------cCccccceeCCCC
Confidence 6789999986 7899999999999986533222111 11 5678999999999
Q ss_pred CEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC
Q 003217 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (838)
Q Consensus 324 ~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~ 403 (838)
..|++.+....+||++.+|.++..+.+.+.. -......|..+ .+.
T Consensus 199 k~lasig~d~~~VW~~~~g~~~a~~t~~~k~-----------------------------~~~~~cRF~~d------~~~ 243 (398)
T KOG0771|consen 199 KFLASIGADSARVWSVNTGAALARKTPFSKD-----------------------------EMFSSCRFSVD------NAQ 243 (398)
T ss_pred cEEEEecCCceEEEEeccCchhhhcCCcccc-----------------------------hhhhhceeccc------CCC
Confidence 8888877669999999999766554321110 00001122211 001
Q ss_pred CcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCee--eEeecCCccEEEEEE--cCCEEEEEeeCC
Q 003217 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRL--QDFQYLPFAVQCLCT--FGSQIWVGYMNG 479 (838)
Q Consensus 404 ~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l--~tl~~H~~~V~sls~--dG~~LasGs~Dg 479 (838)
...++. +. ..|.+.+.. + .+.+|+-. +.+ ++...-.+.|.++++ +|++++.|+.||
T Consensus 244 -~~l~la-------------a~-~~~~~~v~~-~---~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 244 -ETLRLA-------------AS-QFPGGGVRL-C---DISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred -ceEEEE-------------Ee-cCCCCceeE-E---Eeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 111111 00 011111111 1 23444442 221 222222346777654 799999999999
Q ss_pred eEEEEeCCC-c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 480 IVQVLDLEG-N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 480 tIrlWD~~g-~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
.|-|+++.. + +...-.+|...|++|.+ |.+++++.|.|.++++-.+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999873 3 35566799999999984 77899999999999887764
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.00 E-value=1.7e-07 Score=103.74 Aligned_cols=244 Identities=10% Similarity=0.102 Sum_probs=136.1
Q ss_pred EecCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC-CCcE
Q 003217 139 VCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRI 215 (838)
Q Consensus 139 ~~~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~-DGtI 215 (838)
..+++.|+++ .++.|.+|++...-.... ....+ . .+....++++|+|+.|+++++ ++.|
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~------------~~~~~-----~-~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTF------------AAESP-----L-PGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEE------------eeeec-----C-CCCceEEEECCCCCEEEEEEcCCCeE
Confidence 3356677775 368999999852100000 00001 1 223567999999999998875 8899
Q ss_pred EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
.+|++++.. ...+....+.++ ....+++|+|+|+ | ++...++.|++||+++... +... ......
T Consensus 105 ~v~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~--~~~~~~------ 170 (330)
T PRK11028 105 SVSPLDKDG----IPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQ--EPAEVT------ 170 (330)
T ss_pred EEEEECCCC----CCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-cccc--CCCcee------
Confidence 999997420 111122223332 3457789999998 5 4666789999999965221 1100 000000
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccC--ccEEEEEecCCceEEeeecccCcccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--RELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
. .. ....+.+++++++..++++. +++|.+||+.. ++. .....
T Consensus 171 ---~----~~-------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~------------------- 216 (330)
T PRK11028 171 ---T----VE-------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQT------------------- 216 (330)
T ss_pred ---c----CC-------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEE-------------------
Confidence 0 00 11234567778888887775 47899999873 332 11100
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP 447 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~ 447 (838)
+... +. .+. .......+.++|||+ ++++. .+++|.+|++
T Consensus 217 -------~~~~------------p~-------------------~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 217 -------LDMM------------PA-------------------DFS-DTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred -------EecC------------CC-------------------cCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 0000 00 000 001122467889987 66654 4689999998
Q ss_pred -C-CCe---eeEeecCC-ccEEEEEEcCCEEEEEee-CCeEEEEeCC
Q 003217 448 -N-GNR---LQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE 487 (838)
Q Consensus 448 -~-g~~---l~tl~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~ 487 (838)
+ +.. ++...... -.-..+.+||++|+++.. +++|.+|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2 322 22222111 111245678999998775 8999999863
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.2e-07 Score=108.91 Aligned_cols=211 Identities=10% Similarity=0.014 Sum_probs=121.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (838)
...+.+.+|+|||+.|+..+. +..|.+|++.++. .+.+..+.+| +.+++|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~------~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------VRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC------eEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 457899999999998886553 3478999998862 0222233444 45689999998 54 555555 4
Q ss_pred EEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--Cc--EEEEec
Q 003217 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LS--FALWDA 339 (838)
Q Consensus 264 IrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~t--I~lWD~ 339 (838)
|.+||+++++.. .++.. .........++++..|+..++ +. |.++|+
T Consensus 269 I~~~d~~tg~~~-~lt~~-----------------------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 269 LYVMDLASGQIR-QVTDG-----------------------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEECCCCCEE-EccCC-----------------------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 888888664321 11110 001223344556655544332 22 333455
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
.+++.. .+... .
T Consensus 319 ~~g~~~-~lt~~-------------------------------------------------------------------~ 330 (429)
T PRK03629 319 NGGAPQ-RITWE-------------------------------------------------------------------G 330 (429)
T ss_pred CCCCeE-EeecC-------------------------------------------------------------------C
Confidence 444321 11000 0
Q ss_pred CceEEEEEcCCCc-EEEEECC---CeEEEEcCCCCeeeEeec-CCccEEEEEEcCCEEEEEeeCCe---EEEEeCCCccc
Q 003217 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGI---VQVLDLEGNLL 491 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~D---gtIrlWD~~g~~l~tl~~-H~~~V~sls~dG~~LasGs~Dgt---IrlWD~~g~~i 491 (838)
.......++|||. |+..+.+ ..|.+||+.+...+.++. +...--++++||++|+.++.++. +.+|+++|+..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 0011345778876 5444332 358889994333344442 21222256789999998887764 77888988888
Q ss_pred ccccccccCEEEEEeCC
Q 003217 492 GGWVAHSSPVIKMAVGA 508 (838)
Q Consensus 492 ~~l~gH~~~V~sla~dg 508 (838)
+.+.+|.+.+...++.+
T Consensus 411 ~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EECccCCCCcCCcccCC
Confidence 88888888777655543
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.92 E-value=1.9e-08 Score=112.25 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=95.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
...|+.+.|+| |...||.|+.||.|++|.+..+.. ..+.-.....+.+|...|+++.|.|-.. |+++|.|.||++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCC-CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 56799999999 778999999999999999887521 1112223456789999999999999653 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
|+.+.+...++. +| +..+..++-+++|.++++.. |++|+++..++++
T Consensus 706 Dl~~~~~~~~l~-------------------gH----------tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 706 DLANAKLYSRLV-------------------GH----------TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ehhhhhhhheec-------------------cC----------cCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 998754333322 22 45677788889999988765 7899999988765
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.89 E-value=8.8e-08 Score=105.55 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
...++..+.||.+.+-+-.. +......+|.++|.+-.++|||. |+|+++||.||+|...+.-.+....
T Consensus 75 ~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q-- 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ-- 143 (737)
T ss_pred cceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh--
Confidence 35688889999998887655 33456789999999999999998 9999999999999974421110000
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCE-EEEeCCCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
. ...+.|++-+++... |++.++ .+. ++-|.+...
T Consensus 144 ----------------------~------~~~v~c~~W~p~S~~vl~c~g~-h~~---------IKpL~~n~k------- 178 (737)
T KOG1524|consen 144 ----------------------N------EESIRCARWAPNSNSIVFCQGG-HIS---------IKPLAANSK------- 178 (737)
T ss_pred ----------------------c------CceeEEEEECCCCCceEEecCC-eEE---------Eeecccccc-------
Confidence 0 224666665554433 222221 111 111111110
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~D 439 (838)
+.+ +..|.+-|.++.+++... ++||++|
T Consensus 179 ---------------------------------------------~i~------WkAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 179 ---------------------------------------------IIR------WRAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred ---------------------------------------------eeE------EeccCcEEEEeecCccccceeecCCc
Confidence 000 112334455666766554 7899999
Q ss_pred CeEEEEcCCCCeeeEeecCCccEEEEEEcCC-EEEEEeeCCeEE
Q 003217 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGS-QIWVGYMNGIVQ 482 (838)
Q Consensus 440 gtIrlWD~~g~~l~tl~~H~~~V~sls~dG~-~LasGs~DgtIr 482 (838)
-..|+||.-|..+.+-..|..+|+++++... ..+.|| -.++|
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R 250 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS-YNTAR 250 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccccceeeee-eeeee
Confidence 9999999999999888899999999987544 444444 34555
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=5.3e-08 Score=102.53 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=89.9
Q ss_pred cEEEEECCCeEEEEcCC--C-CeeeEeecCC-ccEEEEEE--cCCEEEEEee----CCeEEEEeCC--Ccccccc-cccc
Q 003217 432 MIWTGGANGLLLQWDPN--G-NRLQDFQYLP-FAVQCLCT--FGSQIWVGYM----NGIVQVLDLE--GNLLGGW-VAHS 498 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~--g-~~l~tl~~H~-~~V~sls~--dG~~LasGs~----DgtIrlWD~~--g~~i~~l-~gH~ 498 (838)
.+.||+.||+||+||+. + .....++.|+ .+-.|+.. .+..+++|+. +-.|.+||+. .++++.+ ..|.
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~ 165 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN 165 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc
Confidence 37899999999999993 3 2344555666 45556655 3567888773 7789999986 3445554 5899
Q ss_pred cCEEEEEe---CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccc----cccccccceeeEEEE-------EEeCCC
Q 003217 499 SPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKE----FLYTRMENLKILAGT-------WNVGQG 564 (838)
Q Consensus 499 ~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~----~~y~~~~~~~i~~~t-------wNv~~~ 564 (838)
+.|++|.+ +++.|+|||.||-|.++|+..... ++-+.+..+... .-+...+..+|++.| |+++.+
T Consensus 166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CcceeEEecCCCCCeEEeecccceEEeeecCCCcc-hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99999986 677999999999999999876543 333333333222 122333334566555 666554
Q ss_pred C
Q 003217 565 R 565 (838)
Q Consensus 565 ~ 565 (838)
.
T Consensus 245 ~ 245 (376)
T KOG1188|consen 245 S 245 (376)
T ss_pred C
Confidence 4
No 205
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=98.86 E-value=2.7e-09 Score=110.02 Aligned_cols=129 Identities=23% Similarity=0.374 Sum_probs=85.1
Q ss_pred ccCCCceeEEEEEEcCeEEEEEeccccCCcchH-----------HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeee
Q 003217 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (838)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (838)
.++.||-.-.||+|.+..|.|||.||-...+|+ ..|.+.+..++.+|.=.
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~------------------- 213 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE------------------- 213 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh-------------------
Confidence 368899999999999999999999996555554 45777887787776311
Q ss_pred cccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChH------------------HHHHH---------------hh
Q 003217 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD------------------EARDF---------------IS 788 (838)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~------------------~~~~~---------------i~ 788 (838)
. ...|.+|+|||||||++..+.- .+.+. |+
T Consensus 214 ----------------~-~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vE 276 (391)
T KOG1976|consen 214 ----------------G-LRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVE 276 (391)
T ss_pred ----------------c-cCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEee
Confidence 1 2457999999999999952110 00011 11
Q ss_pred hcchHHHhhccchHHH--------HhcCCCcCC-cccCCCCCCCCCcccCCCCCccCCC
Q 003217 789 QRCFDWLRERDQLRAE--------MEAGNVFQG-MREADIKFPPTYKFEKHLAGLAGTL 838 (838)
Q Consensus 789 ~~~~~~Ll~~DQL~~~--------~~~~~~f~g-f~E~~I~F~PTYK~~~~~~~~~~~~ 838 (838)
++.|+ -..||-+... -++-..|+. +.|..|.|||||.|..+..+-..||
T Consensus 277 kk~FD-yfnh~~f~d~~r~~~~~~dkEl~nf~~kl~E~~i~FpPsypysed~~~~E~~m 334 (391)
T KOG1976|consen 277 KKRFD-YFNHDWFFDLGRGMVKRYDKELANFAFKLKEETIFFPPSYPYSEDDSGKEEFM 334 (391)
T ss_pred hhhcc-hhhhHHHHHcCchhhhhcchHHHHHHHHHhheeecCCCCCCCCcCccchHHHH
Confidence 22233 1122222110 011124444 8999999999999999998888776
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=8.6e-09 Score=113.57 Aligned_cols=130 Identities=18% Similarity=0.340 Sum_probs=108.0
Q ss_pred eeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe-ecCCccEEEEEE----cCC
Q 003217 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT----FGS 470 (838)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls~----dG~ 470 (838)
+.+++..-++++.....+.+|.++|.+|.++.||. |+|||.|-.+.|||. .-+.++.+ +||..-|.|+.+ ..+
T Consensus 29 ~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 29 IYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred HhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCe
Confidence 34455556677776778899999999999999998 789999999999999 66776665 589999999865 345
Q ss_pred EEEEEeeCCeEEEEeCCC-----------cccccccccccCEEEEEe--C-CCEEEEEcCCCCeeeeecCC
Q 003217 471 QIWVGYMNGIVQVLDLEG-----------NLLGGWVAHSSPVIKMAV--G-AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 471 ~LasGs~DgtIrlWD~~g-----------~~i~~l~gH~~~V~sla~--d-g~~l~S~S~DgtIrlWdl~s 527 (838)
.|++|..|..|+|+|+.. ..++.|..|++.|..|+. + +..++|+|.||+||-.|++-
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 889999999999999751 247789999999999984 3 46799999999999999875
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=5.3e-07 Score=103.84 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=54.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--t 263 (838)
...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 4578899999999999988754 369999998862 223334445556789999997 5 4666666 5
Q ss_pred EEEEECCCcc
Q 003217 264 IKIWPWEAIE 273 (838)
Q Consensus 264 IrvWd~~~~~ 273 (838)
|.+||+.+++
T Consensus 274 Iy~~d~~~g~ 283 (433)
T PRK04922 274 IYVMDLGSRQ 283 (433)
T ss_pred EEEEECCCCC
Confidence 8888886643
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.80 E-value=8.2e-08 Score=97.90 Aligned_cols=257 Identities=14% Similarity=0.154 Sum_probs=137.8
Q ss_pred eeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003217 233 EVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (838)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~ 312 (838)
....+++|.+.|+++.|..+++|.+|..-|.|++|++.+......+. .++ ..
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r-------------------~~g---------~~ 57 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIR-------------------LFG---------RL 57 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhh-------------------hhc---------cc
Confidence 34567899999999999999999999999999999997632211111 000 11
Q ss_pred CeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEe
Q 003217 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (838)
.+..+-.-+++..+.-+.|..+.+|++.-+..+..-. -..+++.|-.. ++ .... +...-..++
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFCrf---Sl--------~~~~---k~~eqll~y 120 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFCRF---SL--------VKKP---KNSEQLLEY 120 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEEee---eeccccccccc---ee--------ccCC---Ccchhheec
Confidence 1222223333333333446678899987766554321 11111111100 00 0000 000000011
Q ss_pred ecC----cceeeecCCcEEEEeccCccccCCCceEEEE--EcCCCc--EEEEECCCeEEEEcC-CCCee----------e
Q 003217 393 QRS----RNAIMGAADAVRRVAAKGGFGDDNRRTEALT--TSIDGM--IWTGGANGLLLQWDP-NGNRL----------Q 453 (838)
Q Consensus 393 ~~~----~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala--~S~dg~--l~Sgs~DgtIrlWD~-~g~~l----------~ 453 (838)
+.. .+..-+....-.++... .-......+.+.. +....+ ++.|-++|.|.+||+ ++..+ .
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred CCcccchhhhhccCccceeEccCc-hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 000 00000000000111100 0001112222222 111122 567889999999999 56332 3
Q ss_pred EeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCC---Ccc-c-ccccccccCEEE--EEeCCCEEEEEcCCCCeeeee
Q 003217 454 DFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE---GNL-L-GGWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 454 tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~---g~~-i-~~l~gH~~~V~s--la~dg~~l~S~S~DgtIrlWd 524 (838)
....|..+|+++.++. .+=++|+.+-.+..|.++ |.+ + .....-+-.|.. |.+|++.++|+++|+.||++.
T Consensus 200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence 3346899999997753 356678888889999875 332 2 222222334544 458999999999999999999
Q ss_pred cCCCCCCchhh
Q 003217 525 VTSPGPLDSIL 535 (838)
Q Consensus 525 l~s~~~~d~~~ 535 (838)
.++..|+.-+.
T Consensus 280 wrtl~pLAVLk 290 (323)
T KOG0322|consen 280 WRTLNPLAVLK 290 (323)
T ss_pred eccCCchhhhh
Confidence 98888876543
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=6e-08 Score=107.07 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC---EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD---LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~---L~SgS~DgtIrv 266 (838)
++-|.||.|+.+|.+|+|||.|-.+.|||.-.- +.+..+ .||++.|.|+.|-|... ++||+.|..|||
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 889999999999999999999999999998753 444444 69999999999999643 689999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccC
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDART 341 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~t 341 (838)
+|+...+.. .....+ ......+..+...|+-++..+.+ ..+|+++ |++|+-+|++-
T Consensus 122 fdl~~~~~~----~~d~~~---------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEG----GMDHGM---------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred Eeccccccc----ccccCc---------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 999652110 000000 01111122346678888887776 6899988 78999999975
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=1.8e-07 Score=110.65 Aligned_cols=148 Identities=22% Similarity=0.311 Sum_probs=108.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceee
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~ 276 (838)
.++++-=++++|+.-+.|.+|+.... +....+.||.+.|.++.++.||+ ++|.|+|.++|+|++++.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~d--------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~- 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHED--------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL- 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEecccc--------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-
Confidence 34555568999999999999998743 11225789999999999999998 799999999999999663210
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEE
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIEN 356 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (838)
.++.+++ +.++|
T Consensus 211 --------------------------------------~~~~fgH-----------saRvw------------------- 222 (967)
T KOG0974|consen 211 --------------------------------------GCTGFGH-----------SARVW------------------- 222 (967)
T ss_pred --------------------------------------Ccccccc-----------cceeE-------------------
Confidence 0111111 12233
Q ss_pred eeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEE
Q 003217 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (838)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sg 436 (838)
.+.+.|. .++++
T Consensus 223 -------------------------------------------------------------------~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 223 -------------------------------------------------------------------ACCFLPN-RIITV 234 (967)
T ss_pred -------------------------------------------------------------------EEEeccc-eeEEe
Confidence 3334455 78889
Q ss_pred ECCCeEEEEcCCCCeeeEeecCCc-cEEEEEE-cCC-EEEEEeeCCeEEEEeCCCcc
Q 003217 437 GANGLLLQWDPNGNRLQDFQYLPF-AVQCLCT-FGS-QIWVGYMNGIVQVLDLEGNL 490 (838)
Q Consensus 437 s~DgtIrlWD~~g~~l~tl~~H~~-~V~sls~-dG~-~LasGs~DgtIrlWD~~g~~ 490 (838)
+.|-|.++|+.++..+.++.+|.. .|..++. .+. .+++++.|++|++||+.+..
T Consensus 235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999888888888888875 5777755 343 77888899999999976543
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.9e-07 Score=110.01 Aligned_cols=160 Identities=17% Similarity=0.316 Sum_probs=105.1
Q ss_pred cCCEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEE
Q 003217 141 TEEQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 141 ~~~~l~~g~d-~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaSGs~DGtIrvW 218 (838)
-...|+++.| ..|||||...-.... .-|+. . ...|++|..+. .|.+|+.|-.||.||++
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~---------------diP~~---s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvy 1236 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVA---------------DIPYG---S-STLVTALSADLVHGNIIAAGFADGSVRVY 1236 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEe---------------ecccC---C-CccceeecccccCCceEEEeecCCceEEe
Confidence 3556666554 599999996533211 12321 1 45677777664 46999999999999999
Q ss_pred ECCCCccCCCCCcceeEEecccccc--EEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeece
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGP--VLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~--V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
|..... +-..+..++.|+.. |..+.+-+.| +|+|||.||.|++||+....+. ++
T Consensus 1237 D~R~a~-----~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~~---------------- 1294 (1387)
T KOG1517|consen 1237 DRRMAP-----PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-TF---------------- 1294 (1387)
T ss_pred ecccCC-----ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-cc----------------
Confidence 987642 11346678999877 9999998866 5999999999999999652110 00
Q ss_pred eecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+...+... -+..+++........|++|+.+.|+||++. |+.+..+.
T Consensus 1295 ~~iv~~~~y-------Gs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k 1341 (1387)
T KOG1517|consen 1295 LTIVAHWEY-------GSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIK 1341 (1387)
T ss_pred ceeeecccc-------CccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccc
Confidence 000001000 113566777666778888888889999986 44444443
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.4e-06 Score=101.62 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcCCC-----CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCc
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-----NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g-----~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~ 489 (838)
|...+.+++++|.++ +++|..||.|.+|.--| .-.+.+.=|...|+++++ +|.+|+||+..|.+-+|.+++.
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 445577899999998 68888999999997633 223445558889999865 8999999999999999998732
Q ss_pred ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeec
Q 003217 490 LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl 525 (838)
-.+-|.--.++|..+. +|+++.+..-.|+.|.+-..
T Consensus 284 ~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 284 KKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 2232333345677765 57776665566888877654
No 213
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.70 E-value=2.3e-07 Score=95.76 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=78.0
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~ 222 (838)
.|.+.++..+|+|.+..-....+-.+ .++. -+.+-. ..|+++..+.. +-++|.+.|-|.|..+||+++
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~-~L~~---------~kns~~-~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQS-VLNN---------NKNSEF-CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhh-hhcc---------Cccccc-CCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 56677777899998853111100000 0000 000011 55777777754 458999999999999999998
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcc
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~ 273 (838)
+. ......+|.+|...|..|+|...|. ++|.+.||.||++|+...+
T Consensus 183 ~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 183 GV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred cc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 62 1123556889999999999999775 6899999999999996543
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=1.7e-06 Score=92.25 Aligned_cols=153 Identities=15% Similarity=0.206 Sum_probs=107.9
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE-e-CCCc
Q 003217 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-H-RDGR 214 (838)
Q Consensus 137 ~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG-s-~DGt 214 (838)
++.-..++|...=+..|.|||+.+...... + +.+.| + ...+.++.+++++-+||-- + .-|.
T Consensus 92 ~VrmNr~RLvV~Lee~IyIydI~~MklLhT-I----------~t~~~-----n-~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 92 AVRMNRKRLVVCLEESIYIYDIKDMKLLHT-I----------ETTPP-----N-PKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEccceEEEEEcccEEEEecccceeehh-h----------hccCC-----C-ccceEeeccCCCCceEEecCCCCCce
Confidence 444456678776566699999987654321 1 22212 1 3356777777666677653 3 3478
Q ss_pred EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc-EEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 215 IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt-IrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
|.+||..+- +....+.+|+++|.+|+|+++|. |+|+|+-|| |||+.+.++++...+..+..
T Consensus 155 V~l~d~~nl--------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------- 217 (391)
T KOG2110|consen 155 VVLFDTINL--------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------- 217 (391)
T ss_pred EEEEEcccc--------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------
Confidence 999999874 66778899999999999999998 689998886 69999988777665543211
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccC
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~t 341 (838)
...+..+++++++..+.+.++ +||.++.+.+
T Consensus 218 ------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 ------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 113667888888887776664 6898888764
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=5.8e-06 Score=95.31 Aligned_cols=73 Identities=15% Similarity=0.002 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCc--
Q 003217 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dgt-- 263 (838)
..+|.+.+|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+.+.+|+|||+ | ++.+.++.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 568999999999999888774 3589999998862 334556677888999999997 5 47777776
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+||++++
T Consensus 272 Iy~~d~~~~ 280 (435)
T PRK05137 272 IYTMDLRSG 280 (435)
T ss_pred EEEEECCCC
Confidence 555576553
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.63 E-value=4.3e-07 Score=100.50 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|...+|+|||++||+-|.||.+||+|..+. +....++.--+...||+|||||+ |++|++|-.|-||.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH--------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 668889999999999999999999999999884 33334455568999999999999 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
....-.-..+.+..++..+..+
T Consensus 362 ~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccceEEEeccccccceeeEeec
Confidence 6543333335555566555544
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=9.4e-06 Score=93.36 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=57.1
Q ss_pred EEEcCCCc-EEEEECC-CeEEEE--cCCCCeeeEeecCCccE--EEEEEcCCEEEEEeeC---CeEEEEeCCCccccccc
Q 003217 425 LTTSIDGM-IWTGGAN-GLLLQW--DPNGNRLQDFQYLPFAV--QCLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 425 la~S~dg~-l~Sgs~D-gtIrlW--D~~g~~l~tl~~H~~~V--~sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l~ 495 (838)
..++|||+ |+..+.+ +...+| |+++...+.+..+...+ .++++||++|+..+.+ ..|.+||+++.....+.
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 45788887 6555543 444455 66543344444333333 3456799988876643 46889998743333333
Q ss_pred c-cccCEEEEEeCCCEEEEEcCCCCee
Q 003217 496 A-HSSPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 496 g-H~~~V~sla~dg~~l~S~S~DgtIr 521 (838)
. +...-.++++||++++.++.|+...
T Consensus 372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 372 DTFLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred CCCCCCCceECCCCCEEEEEEcCCCce
Confidence 2 2122223558999999888887633
No 218
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.59 E-value=4e-05 Score=86.55 Aligned_cols=305 Identities=14% Similarity=0.155 Sum_probs=158.1
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003217 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (838)
Q Consensus 139 ~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrv 217 (838)
+..++.++.++ ++.|..+|..++..... .. +..... .+ .+. +++.++.++.||.+..
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~------------~~---~~~~~~-~~----p~v--~~~~v~v~~~~g~l~a 119 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWR------------VD---LDERLS-GG----VGA--DGGLVFVGTEKGEVIA 119 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeee------------ec---CCCCcc-cc----eEE--cCCEEEEEcCCCEEEE
Confidence 44577888754 67899999877654432 00 000011 11 222 4678889999999999
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
+|.++| +.+....- .+.+.+.....++.++.++.|+.|..||.++++............. +
T Consensus 120 ld~~tG--------~~~W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----------~ 180 (377)
T TIGR03300 120 LDAEDG--------KELWRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT----------L 180 (377)
T ss_pred EECCCC--------cEeeeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----------e
Confidence 999887 33322211 1223222222345677788899999999988765544322110000 0
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
+ .....+.. ++ .+..+. ++.+..+|+++|+.+-........ .......... ..... +
T Consensus 181 ~-------------~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~--~~~~p---~ 238 (377)
T TIGR03300 181 R-------------GSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVD--VDGDP---V 238 (377)
T ss_pred c-------------CCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhc--cCCcc---E
Confidence 0 00000111 12 333333 467888898888865433211000 0000000000 00000 0
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCC-cEEEEec-cCccc--cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCe
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~g~~~--~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~ 451 (838)
+. +..+++...+ .++.+.. .|... .........+. .+++++.++.||.|..+|. +|+.
T Consensus 239 ~~----------------~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 239 VD----------------GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV-DDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EE----------------CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE-eCCEEEEECCCCeEEEEECCCCcE
Confidence 00 0011111111 1222211 11100 00001111222 3567888889999999999 7876
Q ss_pred eeEeec-CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeee
Q 003217 452 LQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGW 523 (838)
Q Consensus 452 l~tl~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrlW 523 (838)
+-.... ....+.+....|.+|++++.+|.|.++|.+ |+.+..+..|...+.+ ...-++.|+-++.||.|..+
T Consensus 302 ~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 644422 111222334468899999999999999986 8888888777655443 33444568889999988764
No 219
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.2e-06 Score=93.35 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
++-|.++.|+.++++|+||+.|..+++|.++.-.. ...-+.+... ..|+..|.|++|....+ |+||..+++|.+-|
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 88999999999999999999999999999875310 0011222221 23578999999988665 88999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
+++.+...... +... .++|..+..++.+..+++.+ ++-|.+||.+..+
T Consensus 134 iEt~qsi~V~~-~~~~--------------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 134 IETKQSIYVAN-ENNN--------------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred cccceeeeeec-ccCc--------------------------ccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 98754322211 1100 12444555555556666655 4678899987543
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.57 E-value=1.3e-07 Score=102.92 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=57.9
Q ss_pred EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--
Q 003217 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (838)
|++++..|-++--|+ .|+.+..+..-.+.+..+.. -...|-.|...|+|.+|..+ ..++..+..|.++|.+|+.
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR 303 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC
Confidence 445555566666666 56655555544444444432 23455566666666666665 3456666666666666664
Q ss_pred CCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 507 GAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
+|.|++|.+.|..++|||++.+..++
T Consensus 304 ~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 304 GGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred CCcEEeecccccceeEeeeccccccc
Confidence 45666666666666666666544433
No 221
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=1.3e-05 Score=85.75 Aligned_cols=89 Identities=11% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCe-EEEEeCC-Ccccccccccc--cCEEEEEe--CCC
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAHS--SPVIKMAV--GAG 509 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~gH~--~~V~sla~--dg~ 509 (838)
.|.|.+||+ +-+.+.++..|.+.|.|+++ +|.+||++|..|| |||+.+. |+.+..|+--. ..|.+|++ |++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 578999999 67888999999999999976 7999999998775 6899986 87776665332 34677875 778
Q ss_pred EEEEEcCCCCeeeeecCC
Q 003217 510 YIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 510 ~l~S~S~DgtIrlWdl~s 527 (838)
+|...|..+||.++.+..
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 899999999999999753
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.56 E-value=9e-06 Score=85.38 Aligned_cols=238 Identities=10% Similarity=0.060 Sum_probs=158.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~ 269 (838)
..||+|.|+++|++.+|.+-....|.|+...+. ...+...+++-|...|+.|.++|.+ +|+||+.|....||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 459999999999999999999999999998774 3356788899999999999999988 5999999999999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
..+. .+... ++.+| .+...+++--++.+.+++.++. ..|.||-.+
T Consensus 85 ~~~~---------~Wkpt------lvLlR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E-------- 130 (361)
T KOG1523|consen 85 PSGG---------TWKPT------LVLLR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYE-------- 130 (361)
T ss_pred CCCC---------eeccc------eeEEE-----------eccceeeEeecCcCceEEeccCccEEEEEEEe--------
Confidence 3211 11111 11111 1334566666777778777764 455555432
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.... |+-+++-+ ......|.++.+.
T Consensus 131 -~ENd-----------------------WWVsKhik-------------------------------kPirStv~sldWh 155 (361)
T KOG1523|consen 131 -QEND-----------------------WWVSKHIK-------------------------------KPIRSTVTSLDWH 155 (361)
T ss_pred -cccc-----------------------eehhhhhC-------------------------------Cccccceeeeecc
Confidence 1111 11111100 0123456778888
Q ss_pred CCCc-EEEEECCCeEEEEcC--CC-----------------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC
Q 003217 429 IDGM-IWTGGANGLLLQWDP--NG-----------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~--~g-----------------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (838)
|++. |+.||.|+.+|++.. ++ +.+.++....++|..+.+ +|.+|+=.+.|++|.+=|.
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 8877 678889999999863 21 223334345678888765 5999888889999999997
Q ss_pred CCc--ccccccccccCEEEEEe-CCCEEEEEcCCCCeee
Q 003217 487 EGN--LLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRG 522 (838)
Q Consensus 487 ~g~--~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrl 522 (838)
.+. ...+...-.-+..++.+ ....++.++.|..=.+
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~l 274 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVL 274 (361)
T ss_pred CCCchhccchhhccCCceeeEeecCCceeecCCCCCceE
Confidence 743 33333333356666654 5667777787754333
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.54 E-value=1.2e-07 Score=104.73 Aligned_cols=87 Identities=23% Similarity=0.249 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
.+...+||+||+ |++.|.||.+||+|. +.+++..++..-+..+|++ +||++|++|++|--|.||... ++.+..-.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 566789999998 899999999999999 5566666766667788885 599999999999999999986 78899999
Q ss_pred ccccCEEEEEeC
Q 003217 496 AHSSPVIKMAVG 507 (838)
Q Consensus 496 gH~~~V~sla~d 507 (838)
||.++|..|++|
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999988
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=1.8e-05 Score=91.25 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=111.0
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee---CCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS---~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|.+||.++. ....+..|...|.+.+|||||+ |+..+ .+..|.+||+.+++... +...
T Consensus 183 ~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~-------- 244 (435)
T PRK05137 183 RLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF-------- 244 (435)
T ss_pred EEEEECCCCC---------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC--------
Confidence 6778887663 3455667888999999999998 66544 34689999997654211 1100
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-C--CcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
...+.....++++.+|+ +.+ + ..|.+||+.++++.+ +..+.
T Consensus 245 ---------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~------------- 289 (435)
T PRK05137 245 ---------------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP------------- 289 (435)
T ss_pred ---------------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-------------
Confidence 01112234455565543 332 2 247777887765422 21100
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC-CC--e
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NG--L 441 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-Dg--t 441 (838)
.......++|||. |+..+. ++ .
T Consensus 290 ------------------------------------------------------~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 290 ------------------------------------------------------AIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred ------------------------------------------------------CccCceeEcCCCCEEEEEECCCCCCe
Confidence 0011245677776 555442 22 5
Q ss_pred EEEEcCCCCeeeEeecCCccEE--EEEEcCCEEEEEeeC---CeEEEEeCCCccccccc-ccccCEEEEEeCCCEEEEEc
Q 003217 442 LLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV-AHSSPVIKMAVGAGYIFTLA 515 (838)
Q Consensus 442 IrlWD~~g~~l~tl~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l~-gH~~~V~sla~dg~~l~S~S 515 (838)
|.+||+++...+.+..+...+. .+++||++|+..+.+ ..|.+||+++...+.+. ++...-.+.++||+.|+-.+
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEE
Confidence 8888886655555554444343 356799988876643 36888998754333332 22111123456888876544
Q ss_pred C
Q 003217 516 N 516 (838)
Q Consensus 516 ~ 516 (838)
.
T Consensus 396 ~ 396 (435)
T PRK05137 396 Q 396 (435)
T ss_pred c
Confidence 4
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=8.2e-06 Score=93.83 Aligned_cols=71 Identities=10% Similarity=0.004 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIr 265 (838)
..++.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+....+.+.+.+|+|||+ |+ +.+.|+..+
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 4578899999999999887754 359999998862 222333345567899999997 54 778899888
Q ss_pred EEECC
Q 003217 266 IWPWE 270 (838)
Q Consensus 266 vWd~~ 270 (838)
||.++
T Consensus 266 Iy~~d 270 (427)
T PRK02889 266 IYTVN 270 (427)
T ss_pred EEEEE
Confidence 88764
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.51 E-value=1e-05 Score=92.38 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG---tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--t 263 (838)
...+.+.+|+|||+.|+..+.++ .|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 44688899999999998877553 79999998862 233445666778899999997 5 4666555 4
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+|++.++
T Consensus 260 i~~~d~~~~ 268 (417)
T TIGR02800 260 IYVMDLDGK 268 (417)
T ss_pred EEEEECCCC
Confidence 777887653
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=5.9e-06 Score=87.31 Aligned_cols=262 Identities=15% Similarity=0.206 Sum_probs=140.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc------------ccEEEEEEecCCC---E
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYGD---L 255 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG~---L 255 (838)
..-+.|+.|+..|.+||||..+|.|.++.-+... ...+.-...+|.|. ..|+.+.+.+++. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~---~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLY---KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccc---ccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 3468899999999999999999999998755421 01112233456664 3588888888875 3
Q ss_pred EEeeCCCcEEEEECCCcceee---ecCCC--ceeeeEE----------EEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 256 WSGSEGGGIKIWPWEAIEKAL---SLKPE--ERHTAAL----------IVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 256 ~SgS~DgtIrvWd~~~~~~~~---~~~~~--~~~~~~~----------~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
+....|+|||+|.+....... .+..+ .....++ .++.+.....+++ ++-.+.++...
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa--------HtyhiNSIS~N 173 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA--------HTYHINSISVN 173 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc--------ceeEeeeeeec
Confidence 456689999999985421111 00000 0000000 0011111111111 22345666777
Q ss_pred CCCCEEEEeCCCcEEEEeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee
Q 003217 321 HSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (838)
Q Consensus 321 ~~~~~V~s~s~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (838)
++.....|+.|..|.||++.- .+.... +++-+..--..-+ .+++-.|.|..-+.+
T Consensus 174 sD~Et~lSADdLRINLWnlei~d~sFnI----------VDIKP~nmEeLte--------------VITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 174 SDKETFLSADDLRINLWNLEIIDQSFNI----------VDIKPANMEELTE--------------VITSAEFHPHHCNVF 229 (433)
T ss_pred CccceEeeccceeeeeccccccCCceeE----------EEccccCHHHHHH--------------HHhhhccCHhHccEE
Confidence 778888888889999999852 222111 1221110000000 000001111111111
Q ss_pred e-ecCCcEEEEec----------cC------------ccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC--CCCeeeE
Q 003217 400 M-GAADAVRRVAA----------KG------------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQD 454 (838)
Q Consensus 400 ~-g~~~~v~~v~~----------~g------------~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~--~g~~l~t 454 (838)
+ .+..|.+++-. .. -|.+-...|..+.|++.|+.+..-.=-+|++||+ +.+.+.+
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVET 309 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceE
Confidence 1 01112122111 00 0122334677899999998544333368999999 4677888
Q ss_pred eecCCc------------cEEE---EEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 455 FQYLPF------------AVQC---LCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 455 l~~H~~------------~V~s---ls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
++-|.. .|.. ++.. +.++.+|+.....+++++.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 876642 2221 2344 4599999999999999965
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.48 E-value=5.8e-05 Score=84.89 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=147.7
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
+++-..+|.|.+.|.++. +.+..+..+.+.-..++|+|||+ ++.++.||.|.++|+.+.+..-++..
T Consensus 9 ~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----
T ss_pred EEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----
Confidence 345566899999999885 55666665444445678999998 77888999999999977542211110
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
......++.+++|..++.+. ..++.++|.+|.++++++...+... ..
T Consensus 77 --------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---~~-- 125 (369)
T PF02239_consen 77 --------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---DG-- 125 (369)
T ss_dssp --------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---TT--
T ss_pred --------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc---cc--
Confidence 11245567778888888776 4789999999999988775322100 00
Q ss_pred Ccccccccceee-EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC------ccccCCCceEEEEEcCCCc-EE
Q 003217 363 LPDFAMEDEFKT-KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNRRTEALTTSIDGM-IW 434 (838)
Q Consensus 363 ~~~~~~~~~~~~-~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~~~~~~~v~ala~S~dg~-l~ 434 (838)
.+.|. .++....+..-. +...+ .+.+..+.... +............++|+++ ++
T Consensus 126 -------~~~Rv~aIv~s~~~~~fV--v~lkd---------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 126 -------PESRVAAIVASPGRPEFV--VNLKD---------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp -------S---EEEEEE-SSSSEEE--EEETT---------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred -------cCCCceeEEecCCCCEEE--EEEcc---------CCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 00000 000000000000 00000 01111111000 0111122344578999987 43
Q ss_pred E-EECCCeEEEEcC-CCCeeeEee----cCCccEEEE-----------EEcCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 435 T-GGANGLLLQWDP-NGNRLQDFQ----YLPFAVQCL-----------CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 435 S-gs~DgtIrlWD~-~g~~l~tl~----~H~~~V~sl-----------s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
. ...++.|-++|. +++.+..+. .|..++..+ .-.+....+.-....+.+||.. .+.++.+..
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 3 445678999999 565554442 243333333 3233333222233355567765 677787777
Q ss_pred cccCEE-EEEeCCCEEEEE----cCCCCeeeeecCCCCCCchhhhh-hhhccccccccccceeeEEEEEEeCC
Q 003217 497 HSSPVI-KMAVGAGYIFTL----ANHGGIRGWNVTSPGPLDSILCK-ELAGKEFLYTRMENLKILAGTWNVGQ 563 (838)
Q Consensus 497 H~~~V~-sla~dg~~l~S~----S~DgtIrlWdl~s~~~~d~~~~~-~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (838)
....+. ...+++.+++.. ...++|.++|.++......+... ...--..+|+..++ .+|+..|+.++
T Consensus 268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~~~~ 339 (369)
T PF02239_consen 268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK-EVWVSVWDGNG 339 (369)
T ss_dssp SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS-EEEEEEE--TT
T ss_pred CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC-EEEEEEecCCC
Confidence 666633 223688888866 45689999998776433332210 00122456777776 48888888774
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.7e-05 Score=85.34 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=86.7
Q ss_pred CcEEEEECCCeEEEEcC-CC-CeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccccc-ccccccCEEEE
Q 003217 431 GMIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKM 504 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g-~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~sl 504 (838)
.++++++.-+.||+||. .+ +.+..|..-.++|+++. ++|..|++|..-+.+..+|+. ++++.. +.|-++.|.+|
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 45899999999999999 55 56777777778888875 578999999999999999998 566555 89999999999
Q ss_pred EeCCC--EEEEEcCCCCeeeeecCCCCCCch
Q 003217 505 AVGAG--YIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 505 a~dg~--~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
-.+++ +++|+|-|.-|||.|+.+..++..
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 87665 899999999999999988655554
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.45 E-value=4.7e-07 Score=98.70 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
-+.+.++.+|+.|+.|+..|.+-..|..+. +....+. -...|..+.|-.+-+++....-+-+-|+|-...+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--------~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--------KLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE 202 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccc--------eeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE
Confidence 456788889999999999999999999886 3332221 1568889999887776666677888899875432
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~ 352 (838)
.-++. -+ ..+..+-+-+---.+++++. +-++.-|+.+|+++..+....
T Consensus 203 -lHClk-------------------~~-----------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 203 -LHCLK-------------------RH-----------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred -Eeehh-------------------hc-----------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC
Confidence 11111 01 11222222233334444443 446777888888754332100
Q ss_pred ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-CC
Q 003217 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DG 431 (838)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~-dg 431 (838)
. .+..+...| +.
T Consensus 252 G-------------------------------------------------------------------~~~vm~qNP~Na 264 (545)
T KOG1272|consen 252 G-------------------------------------------------------------------RTDVMKQNPYNA 264 (545)
T ss_pred C-------------------------------------------------------------------ccchhhcCCccc
Confidence 0 000011111 22
Q ss_pred cEEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCC-cccccccccccCEEEEEeC
Q 003217 432 MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~sla~d 507 (838)
.+=.|..+|+|-+|..+ .+.+-.+..|.++|.+|+++ |.++++.+.|..|+|||+.. ..+.+... .-+...+++.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS 343 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc
Confidence 35578899999999994 67788888999999999884 88999999999999999974 33333322 2345566777
Q ss_pred CCEEEEEcCCCCeeeee
Q 003217 508 AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 508 g~~l~S~S~DgtIrlWd 524 (838)
.+.++.+|.-..|.+|.
T Consensus 344 qkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 344 QKGLLALSYGDHVQIWK 360 (545)
T ss_pred cccceeeecCCeeeeeh
Confidence 77778788888899997
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=6.1e-06 Score=92.88 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=76.8
Q ss_pred CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
+.|.|++.|+.+..|+. +++.+..+.+....+.++ ++||+.+++|+ +.|++||.+ .+.+..|+||.++|.++++
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 45889999999999999 678888888877777765 56888888864 789999998 6789999999999999874
Q ss_pred --C-----CCEEE-EEcCCCCeeeeecCC
Q 003217 507 --G-----AGYIF-TLANHGGIRGWNVTS 527 (838)
Q Consensus 507 --d-----g~~l~-S~S~DgtIrlWdl~s 527 (838)
+ |.+++ ++..+..|-+|-+..
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccccccceeeeccccccceeEEEEEc
Confidence 3 56666 556777888898654
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=1.8e-05 Score=91.26 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=38.7
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC---CCcEEEEECCCcc
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEAIE 273 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtIrvWd~~~~~ 273 (838)
..|.+||.++. ....+..|...|.+.+|+|||+ |+..+. +..|.+||+.+++
T Consensus 184 ~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~ 239 (433)
T PRK04922 184 YALQVADSDGY---------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ 239 (433)
T ss_pred EEEEEECCCCC---------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC
Confidence 36889998763 3455667788999999999998 766553 3469999997654
No 233
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.41 E-value=7.3e-05 Score=84.42 Aligned_cols=266 Identities=14% Similarity=0.077 Sum_probs=137.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
++.|+.++.+|.+..+|..+| +.+-...-......+.+. .++.++.++.|+.+..+|.++++...+.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG--------~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG--------KRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC--------cEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 578999999999999999887 343332222211122332 24568889999999999998776544332110
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
. +. +.. +. .++..++...++.+..||.++|+.+-.+........ ...
T Consensus 136 ~----------------------~~---~~p----~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---~~~ 182 (377)
T TIGR03300 136 E----------------------VL---SPP----LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---LRG 182 (377)
T ss_pred e----------------------ee---cCC----EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee---ecC
Confidence 0 00 000 01 122233333457799999999998766543221100 000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Ccccc--CCCc---e-EEEEEcCCCcEEE
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD--DNRR---T-EALTTSIDGMIWT 435 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~--~~~~---v-~ala~S~dg~l~S 435 (838)
.....+.+. . ++...... . +. .....+|...+... +.... .... + .+..+ .++.++.
T Consensus 183 ~~sp~~~~~-~--v~~~~~~g-~---v~--------ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~ 246 (377)
T TIGR03300 183 SASPVIADG-G--VLVGFAGG-K---LV--------ALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYA 246 (377)
T ss_pred CCCCEEECC-E--EEEECCCC-E---EE--------EEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEE
Confidence 000000000 0 00000000 0 00 00011111111000 00000 0000 0 01111 2567888
Q ss_pred EECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccc-cccCEEEEEeCCCEEE
Q 003217 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIF 512 (838)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~dg~~l~ 512 (838)
++.+|.+..||. +|+.+-.... ........++.+|++++.||.|..+|.. |+.+-.... ....+.+....+..++
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~ 324 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLV 324 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEE
Confidence 888999999999 7876654432 1122345678899999999999999986 665432211 1112233334577899
Q ss_pred EEcCCCCeeeeecCCC
Q 003217 513 TLANHGGIRGWNVTSP 528 (838)
Q Consensus 513 S~S~DgtIrlWdl~s~ 528 (838)
.++.||.|.+||..+.
T Consensus 325 ~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 325 VGDFEGYLHWLSREDG 340 (377)
T ss_pred EEeCCCEEEEEECCCC
Confidence 9999999999986553
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.39 E-value=6.7e-06 Score=84.02 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC---CCcE
Q 003217 191 VSSVMCMVGDEASGVVWS--GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaS--Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtI 264 (838)
.++|.+++|+|+|+.++. |..+..|.+||+.. +.+.++. ...++.|.|||+|+ |+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 457999999999988644 55788999999974 5566653 56788999999998 666654 3679
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-------CCcEEEE
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------FLSFALW 337 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-------~~tI~lW 337 (838)
.+||+.+.+...... +..+..+..+++|..++++. +.+++||
T Consensus 128 ~~wd~~~~~~i~~~~-------------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 128 EFWDVRKKKKISTFE-------------------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEEECCCCEEeeccc-------------------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 999997543322111 12344556666676665543 4589999
Q ss_pred eccCccEEEE
Q 003217 338 DARTRELLKV 347 (838)
Q Consensus 338 D~~tg~~l~~ 347 (838)
+.. |+++..
T Consensus 177 ~~~-G~~l~~ 185 (194)
T PF08662_consen 177 SFQ-GRLLYK 185 (194)
T ss_pred Eec-CeEeEe
Confidence 984 655443
No 235
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=9.8e-07 Score=97.37 Aligned_cols=246 Identities=15% Similarity=0.141 Sum_probs=140.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
+..|..++.-.+..-++|+|+|.|||+|.+.... +....-.+..+.++|+.+|.++.|-.+-+ ..+|-||.|.+||.=
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-D~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPF 812 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-DEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPF 812 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEecccc-CccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeeccc
Confidence 5567766654455678899999999999986531 11111235667899999999999988654 335569999999963
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
-+...-......+ ++. .+.++++-.-+..-.++.++ ..||++.|.+.++....+.
T Consensus 813 igr~Laq~~dapk----------------~~a--------~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPK----------------EGA--------GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ccchhHhhhcCcc----------------cCC--------CceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 2211000000000 111 12345544322222222223 3689999998877644332
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
.-. .. ..+..+.++++.+
T Consensus 869 Vcn--------------------------a~------------------------------------~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 869 VCN--------------------------AP------------------------------------GPNALTRAIAVAD 886 (1034)
T ss_pred ecc--------------------------CC------------------------------------CCchheeEEEecc
Confidence 110 00 1112244566666
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE-EEcCCEEEEEeeCCeEEE-EeCC-CcccccccccccCEEEE
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL-CTFGSQIWVGYMNGIVQV-LDLE-GNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl-s~dG~~LasGs~DgtIrl-WD~~-g~~i~~l~gH~~~V~sl 504 (838)
.|. ++.|-.+|+|.+-|. +|+.+..+..-......+ ++..+.|+....|.++-+ |-.- |......+....+..=+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 665 777778899999999 898887665433333344 345667777778888888 8743 44333333333222222
Q ss_pred EeCCCEEEEEcCCCCeeeee
Q 003217 505 AVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 505 a~dg~~l~S~S~DgtIrlWd 524 (838)
..-|-.++++-.-..++++-
T Consensus 967 qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 967 QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hccCceeEEeccCcEEEEEe
Confidence 22233455555555555553
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.37 E-value=1.3e-05 Score=84.26 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=114.3
Q ss_pred cCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCC-CCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc
Q 003217 122 KPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD 200 (838)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~d~~vrvWd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s 200 (838)
+..+.-|..-...++++....+++.+--++.|.||.+. +.....+ .|....| ..+.|+.=.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~----------~et~~NP--------kGlC~~~~~ 145 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHV----------IETRSNP--------KGLCSLCPT 145 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheee----------eecccCC--------CceEeecCC
Confidence 33444444555667788888899999999999999985 3222211 0111111 123333322
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc-EEEEECCCcceeee
Q 003217 201 EASGVVWS-GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALS 277 (838)
Q Consensus 201 ~dg~~LaS-Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt-IrvWd~~~~~~~~~ 277 (838)
.+..+||- |..-|.|++-|+.... ........+|...|.+|+++-+|. ++|+|.-|| |||||..++++...
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~------~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTK------PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcC------cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 23334443 6677999999998741 012356789999999999999998 689998775 79999998877655
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccC
Q 003217 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 278 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~t 341 (838)
+..+. ...++.+++++++...|+++++ +|+.++.++.
T Consensus 220 ~RRG~---------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGV---------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eecCC---------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 43221 1346889999999999999887 5888887754
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.33 E-value=3.7e-06 Score=85.93 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCc-E--EEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEee---CCeEEEEeCC-Ccc
Q 003217 420 RRTEALTTSIDGM-I--WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GNL 490 (838)
Q Consensus 420 ~~v~ala~S~dg~-l--~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~~ 490 (838)
..|.+++++|+|. + +.|..++.|.+||++++.+.++. ...++.+ +|+|++|+.|+. .|.|++||++ .+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 3588999999987 4 34556789999999988888774 4566666 568999999875 4679999997 456
Q ss_pred cccccccccCEEEEE--eCCCEEEEEcC------CCCeeeeecC
Q 003217 491 LGGWVAHSSPVIKMA--VGAGYIFTLAN------HGGIRGWNVT 526 (838)
Q Consensus 491 i~~l~gH~~~V~sla--~dg~~l~S~S~------DgtIrlWdl~ 526 (838)
+.... |. .+..++ +||+++++++. |+.++||++.
T Consensus 138 i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 66654 33 355665 58999998764 8999999974
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.33 E-value=0.0001 Score=84.17 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred EEcCCCc-EEEEEC-CC--eEEEEcCCCCeeeEeecCCccEE--EEEEcCCEEEEEeeCC---eEEEEeCCCcccccccc
Q 003217 426 TTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA 496 (838)
Q Consensus 426 a~S~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~tl~~H~~~V~--sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g 496 (838)
.+++||+ |+..+. ++ .|.+||+.+...+.+..+...+. .++++|++|+.++.++ .|.+||+.+.....+..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 3566665 544443 22 57778885444445554444444 3456899998888765 88899987543333332
Q ss_pred cccCE-EEEEeCCCEEEEEcCCCCeeee
Q 003217 497 HSSPV-IKMAVGAGYIFTLANHGGIRGW 523 (838)
Q Consensus 497 H~~~V-~sla~dg~~l~S~S~DgtIrlW 523 (838)
+.... .++++||+.++..+.++....+
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 21111 1345788888877766544433
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=9.5e-05 Score=85.07 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=53.4
Q ss_pred EEEcCCCc-EEEEEC-CCeEEEEcC--CCCeeeEee--cCCccEEEEEEcCCEEEEEeeCC---eEEEEeCCCccccccc
Q 003217 425 LTTSIDGM-IWTGGA-NGLLLQWDP--NGNRLQDFQ--YLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV 495 (838)
Q Consensus 425 la~S~dg~-l~Sgs~-DgtIrlWD~--~g~~l~tl~--~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~ 495 (838)
..++|||+ |+..+. ++...+|.+ .+...+.+. ++...-.++++||++|+..+.++ .|.+||+.+.....+.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 45788887 555543 455666654 343333332 22122235678999998776544 6999998743323333
Q ss_pred cc-ccCEEEEEeCCCEEEEEcCCCC
Q 003217 496 AH-SSPVIKMAVGAGYIFTLANHGG 519 (838)
Q Consensus 496 gH-~~~V~sla~dg~~l~S~S~Dgt 519 (838)
.+ ...-.+.++||+.|+.++.++.
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCC
Confidence 22 1212234568888887666554
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.32 E-value=0.00039 Score=78.27 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=65.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
..++.|.|.|.++...... +. +...-..++++|||+++++.+.||.|.++|+.+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~---------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--- 68 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVAR---------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--- 68 (369)
T ss_dssp GGGTEEEEEETTT-SEEEE---------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---
T ss_pred cCCCEEEEEECCCCeEEEE---------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---
Confidence 4578999999876543321 11 1122234778999999999999999999999997
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEEEEECCCcce
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEK 274 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~~~~~ 274 (838)
+.+.+.+.-. .-.++++|+||+ ++ +.-.++++.++|.++.+.
T Consensus 69 -----~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 69 -----KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp -----SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred -----cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 5565655433 346899999999 44 566899999999987553
No 241
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.32 E-value=4.5e-05 Score=88.86 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=68.6
Q ss_pred EEEEECCCeEEE---EcCC--C----CeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC--Ccccccccccc
Q 003217 433 IWTGGANGLLLQ---WDPN--G----NRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE--GNLLGGWVAHS 498 (838)
Q Consensus 433 l~Sgs~DgtIrl---WD~~--g----~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~--g~~i~~l~gH~ 498 (838)
++.|+.+|.|.- ++.+ . +.+..+..|.++|+++.. .+ +.+.+++ |-+|+||... ..++..+.-+.
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 566666665543 2221 1 234466678999999964 34 4555555 9999999865 56788899999
Q ss_pred cCEEEEEeCC---CEEEEEcCCCCeeeeecCC
Q 003217 499 SPVIKMAVGA---GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 499 ~~V~sla~dg---~~l~S~S~DgtIrlWdl~s 527 (838)
+.|+++++.+ ..++++..||.|-+||+..
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 9999999854 4688999999999999753
No 242
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=2.2e-06 Score=63.11 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=34.2
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
++..++++|+++|++|+|+|++. |+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45778999999999999999987 78999999999997
No 243
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.25 E-value=6.3e-06 Score=94.21 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=51.5
Q ss_pred eEEEEEcCCC---CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 194 VMCMVGDEAS---GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 194 V~~la~s~dg---~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
|-.+.+++.. ..+++-+...+| +|+++... + -....-+-||+.+|+.+-|.|... |+++|-|..+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss----~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSS----S-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhh-hhhhhcCC----c-cceEEEEecCccceeccccCCCCCcceeeccccccceeee
Confidence 4556666532 456666655555 89988642 1 122344679999999999998664 78999999999999
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+.+
T Consensus 144 ~rS 146 (1081)
T KOG0309|consen 144 MRS 146 (1081)
T ss_pred ccC
Confidence 965
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=9.5e-05 Score=85.56 Aligned_cols=73 Identities=14% Similarity=-0.000 Sum_probs=48.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCc--
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG-- 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D-G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dgt-- 263 (838)
..++.+..|+|||+.|+..+.+ + .|.+||+.++. .+.+..+.+ ...+.+|||||+ |+ +.+.++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------REKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------eEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4467889999999988776543 3 57788888762 011222333 345689999998 64 6677776
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+||++++
T Consensus 288 Iy~~dl~tg 296 (448)
T PRK04792 288 IYVVDIATK 296 (448)
T ss_pred EEEEECCCC
Confidence 555676553
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.00018 Score=82.75 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=50.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D-G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (838)
..++.+..|+|||+.|+..+.+ + .|.+|++.++. ...+....+.+.+.+|+|||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------EEEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 4578899999999988776644 2 58889998862 222323334556789999997 54 666665 5
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+||++++
T Consensus 269 Iy~~d~~~~ 277 (430)
T PRK00178 269 IYVMDLASR 277 (430)
T ss_pred EEEEECCCC
Confidence 777788664
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.0001 Score=82.79 Aligned_cols=278 Identities=16% Similarity=0.163 Sum_probs=146.8
Q ss_pred cccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecC--CCceeeeEEEEeec---------eeecccceeccc
Q 003217 239 AHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLK--PEERHTAALIVERS---------YIDLRSHLSVNG 305 (838)
Q Consensus 239 gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~--~~~~~~~~~~~~~s---------~~~l~~~~~~~~ 305 (838)
+|...-+.|..||||+ |+||-.--.||++|+......+.-+ .+......++.+.+ .|.+.+.....-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 5777889999999998 5789888999999996532211111 11111122221111 122211100000
Q ss_pred eeeeecCCeEEEEEcCCCC-EEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCc
Q 003217 306 FSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~-~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (838)
..-+|. ..+.++...-.. .+..|+...|.-.++..|.++.-|..+....+.+.+........ - +.
T Consensus 129 ~~RIP~-~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla---------~----Gt 194 (703)
T KOG2321|consen 129 RTRIPK-FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA---------C----GT 194 (703)
T ss_pred eeecCc-CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE---------e----cc
Confidence 001111 122233222222 33333445788889999999887765543333333322111000 0 00
Q ss_pred ceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc--
Q 003217 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-- 460 (838)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-- 460 (838)
..+.+.||+.......+.-+....|.. .........|+++.|+.||. ++.|+.+|.|.++|+ ..+.+. ...|.+
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s-~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~ 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNS-HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYEL 272 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCC-CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCcc
Confidence 111234443221112222111111110 11222334689999999997 899999999999999 444432 234444
Q ss_pred cEEEEEE---c-CCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCch
Q 003217 461 AVQCLCT---F-GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 461 ~V~sls~---d-G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
+|..+.+ + +..|+|. ....++|||-. |+.......- ..++.+. +++.++++|=.+.-+-.+-+..-+|.--
T Consensus 273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred ceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence 6666654 2 3466664 56799999975 7766655432 3365554 5777888888887777776666555544
Q ss_pred h
Q 003217 534 I 534 (838)
Q Consensus 534 ~ 534 (838)
|
T Consensus 351 W 351 (703)
T KOG2321|consen 351 W 351 (703)
T ss_pred h
Confidence 4
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.18 E-value=1.4e-05 Score=84.02 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=78.2
Q ss_pred CCEEEE--ec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCc-EEE
Q 003217 142 EEQLWA--GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR-IMC 217 (838)
Q Consensus 142 ~~~l~~--g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGt-Irv 217 (838)
+..+.+ |. -|.|+|-|+..... .+|..-..| .+.|.|++.+.+|.+|||+|..|| ||+
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~-----------------~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKP-----------------NAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCc-----------------CCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 335555 32 36888888864321 123322344 889999999999999999999997 899
Q ss_pred EECCCCccCCCCCcceeEEec-c-ccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 218 WKMNARLLDSDDGFGEVLSWQ-A-HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~-g-H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
||..+| ..+..++ | -...|.+|+|||++. |+.+|+-|||.|+.+..
T Consensus 209 Fdt~~g--------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 209 FDTEDG--------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCC--------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999998 4566654 3 246799999999998 67888889999998854
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.13 E-value=1.9e-05 Score=97.99 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCCeEEEEcC--CC--CeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003217 438 ANGLLLQWDP--NG--NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (838)
Q Consensus 438 ~DgtIrlWD~--~g--~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (838)
.++.+.+||. .+ .++. +.|.+.+++++.- -+.|.+|+.+|.|+|||+. .+++++|+. +. -..+
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~ 2382 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREY 2382 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhhe
Confidence 4678999997 33 3455 7899999998654 5589999999999999998 577888876 12 3457
Q ss_pred EEEEcCCCCeeeeecCCCCCCchhhh
Q 003217 511 IFTLANHGGIRGWNVTSPGPLDSILC 536 (838)
Q Consensus 511 l~S~S~DgtIrlWdl~s~~~~d~~~~ 536 (838)
+++++..|.|+||++..+..+....-
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCch
Confidence 89999999999999988877766553
No 249
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.13 E-value=3.3e-06 Score=87.69 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=39.0
Q ss_pred ccEEEEEEEecCCcCccCceeeceeecccC---cccCCCceeEEEEEEcCeEEEEEeccccCCcch
Q 003217 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFG---RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (838)
Q Consensus 642 ~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~---~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~ 704 (838)
.+..++++.|.++...+..........+.. ....+++.+.+++. ++.|+++|+|+.+....
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~ 135 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDE 135 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchh
Confidence 467889999998764443333222222221 22356677777776 99999999999985443
No 250
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.13 E-value=1e-05 Score=87.42 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE-eccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
-+-++.|+++||++.|.++.+|..||+=..... --+.+ +.||+.-|..|+.-++-.|+|||.|++||+||+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 668999999999999999999999998765542 22333 369999999999998777999999999999999
Q ss_pred CCccee
Q 003217 270 EAIEKA 275 (838)
Q Consensus 270 ~~~~~~ 275 (838)
.++...
T Consensus 223 ~sgk~L 228 (390)
T KOG3914|consen 223 TSGKLL 228 (390)
T ss_pred ccCCcc
Confidence 886543
No 251
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.08 E-value=0.0018 Score=73.75 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeecCC-ccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE-E
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M 504 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-l 504 (838)
.+++++.++.+|.+...|. +|+.+=....-. ....+....+.+|+.++.||.|.+.|.+ |+.+....-+...+.+ .
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 3567888888999999999 676542221101 1122223457788999999999999986 7776555433333332 2
Q ss_pred EeCCCEEEEEcCCCCeeeee
Q 003217 505 AVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 505 a~dg~~l~S~S~DgtIrlWd 524 (838)
...++.|+-++.||.|..++
T Consensus 373 ~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 373 VVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEECCEEEEEeCCceEEEEe
Confidence 33455788889999887765
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.04 E-value=0.00028 Score=74.48 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCcEEEEECC---CeEEEEcCCCCeeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCCCccccccc
Q 003217 421 RTEALTTSIDGMIWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~D---gtIrlWD~~g~~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (838)
.+.-++||+|.+.+..-.| +.+.+||+....+.+.--...+|..+..|. .+|+.+.....+.+|-+.|-......
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 3455899999985544444 479999996655555555677898887763 38888877778999999874332222
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCC
Q 003217 496 AHSSPVIKMAV--GAGYIFTLANHGG 519 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~Dgt 519 (838)
+..-.|.++.+ +|..++-.+.|.-
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 33356777774 6788887887753
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=5.8e-06 Score=91.41 Aligned_cols=89 Identities=13% Similarity=0.270 Sum_probs=67.6
Q ss_pred EECCCeEEEEcC-CCCeeeEee-----cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE-
Q 003217 436 GGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA- 505 (838)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~tl~-----~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla- 505 (838)
++...|||++|. .++..-.++ +.+..+.++++ .|+.+++|-+.|+|-+.|.. |+.+.+|..-.-....++
T Consensus 847 csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa 926 (1034)
T KOG4190|consen 847 CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA 926 (1034)
T ss_pred ccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC
Confidence 456789999998 565544443 33445667754 68899999999999999986 888999987666666665
Q ss_pred eCCCEEEEEcCCCCeee-ee
Q 003217 506 VGAGYIFTLANHGGIRG-WN 524 (838)
Q Consensus 506 ~dg~~l~S~S~DgtIrl-Wd 524 (838)
+..+.+++...|.++-+ |.
T Consensus 927 psdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred chhHHHHhhcccceeEeeeh
Confidence 56777888788888887 76
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.04 E-value=0.0014 Score=83.31 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=137.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--------------ccccEEEEEEecCCC-EE-E
Q 003217 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--------------HRGPVLSLCISSYGD-LW-S 257 (838)
Q Consensus 195 ~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--------------H~~~V~slafs~dG~-L~-S 257 (838)
..+++|++ +.+.++-+..+.|++||..+. .+..+.+ +-..-..|++++++. |+ +
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---------~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---------FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---------EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 45889875 557777778889999998763 2222211 112247899999876 65 4
Q ss_pred eeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe--CCCcEE
Q 003217 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFA 335 (838)
Q Consensus 258 gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~--s~~tI~ 335 (838)
-.....|+++|+.++.- .++....... .+..+ +....... -..-..+++++.+..++.+ +...|+
T Consensus 642 Dt~n~~Ir~id~~~~~V-~tlag~G~~g---------~~~~g-g~~~~~~~--ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 642 DTENHALREIDFVNETV-RTLAGNGTKG---------SDYQG-GKKGTSQV--LNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred eCCCceEEEEecCCCEE-EEEeccCccc---------CCCCC-ChhhhHhh--cCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 44567899999865321 1110000000 00000 00000000 0112346666644554443 246799
Q ss_pred EEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc
Q 003217 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF 415 (838)
Q Consensus 336 lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~ 415 (838)
+||..++.. .++.+++... .. .+. .. .
T Consensus 709 v~d~~~g~v-~~~~G~G~~~-----~~---------------~g~----------------------~~----------~ 735 (1057)
T PLN02919 709 EYNISDGVT-RVFSGDGYER-----NL---------------NGS----------------------SG----------T 735 (1057)
T ss_pred EEECCCCeE-EEEecCCccc-----cC---------------CCC----------------------cc----------c
Confidence 999988765 3443322110 00 000 00 0
Q ss_pred ccCCCceEEEEEcCCCc-EE-EEECCCeEEEEcC-CCCeeeEeec--------------CC--------ccEEEE--EEc
Q 003217 416 GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQY--------------LP--------FAVQCL--CTF 468 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg~-l~-Sgs~DgtIrlWD~-~g~~l~tl~~--------------H~--------~~V~sl--s~d 468 (838)
.........++++++|. |+ +-+.++.|++||+ ++.. ..+.+ +. ..-..+ ..+
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 00011234578888875 64 4456789999998 4432 11110 00 011234 346
Q ss_pred CCEEEEEeeCCeEEEEeCCCcccccccc--------------cccCEEEEE--eCCCEEEEEcCCCCeeeeecCCC
Q 003217 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVA--------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g~~i~~l~g--------------H~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
|...++-+.++.|++||.++..+.++.+ +-.....|+ .+|+.+++-+.+++||+||+.+.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 7766666678999999987544333322 222345555 47888888889999999998653
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=5e-05 Score=83.70 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=49.5
Q ss_pred CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
..++|||.-|.|-+|+- +++.|+-|.+...-|+||-+. -..||+.+.|.-||||-..
T Consensus 407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 35899999999999999 679999999877789999765 4689999999999999973
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00017 Score=81.52 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=87.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
--+|+-|...|.|-+++...| +....+ ..|.+.|+++..+.+- -|.|++.|+.+.+|+.....-.....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g--------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGG--------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred ceEEEeecCCccEEEEEecCC--------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 347899999999999999987 344444 4799999999877664 48999999999999985432111000
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
.....+..++.++++..+.+++ +.|++||+++++.+.+|.+|+..+..+.
T Consensus 142 -----------------------------~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 142 -----------------------------EQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred -----------------------------cCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEE
Confidence 0133455566666766666554 7899999999999999999987665444
Q ss_pred c
Q 003217 360 M 360 (838)
Q Consensus 360 ~ 360 (838)
+
T Consensus 192 f 192 (541)
T KOG4547|consen 192 F 192 (541)
T ss_pred E
Confidence 3
No 257
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.00021 Score=76.43 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG-RIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG-tIrvWd~ 220 (838)
...|.++--++|-+|.....-..+.-++ +-+..+++. ++.. |..+|.+|++.+||..++++|.+. .|++||.
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~-~~s~~~~qv----l~~p--gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp 225 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIR-MMSTHHLQV----LQDP--GHNPVTSMQWNEDGTILVTASFGSSSIMIWDP 225 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccc-cccccchhh----eeCC--CCceeeEEEEcCCCCEEeecccCcceEEEEcC
Confidence 4467778888999998753221111000 001112222 2222 367999999999999999999765 7999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+++. ...+.++| -+.++-+.|||||. |+.++-|++.|||+.
T Consensus 226 dtg~-------~~pL~~~g-lgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 226 DTGQ-------KIPLIPKG-LGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred CCCC-------cccccccC-CCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 9974 22222233 46788999999998 789999999999965
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0019 Score=72.90 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCc---EEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEee---CCeEEEEeCC-Cc
Q 003217 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GN 489 (838)
Q Consensus 419 ~~~v~ala~S~dg~---l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~ 489 (838)
.+.|.++.++++|+ ++-|-+=-++.++|+.|+.+..|-. ++=+++ ++.|.+|+.++. -|.|.+||+. -+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 46788999999996 4556677789999999999887753 333444 557998888775 5899999987 57
Q ss_pred ccccccccccCEEEEEeCCCEEEEEcC------CCCeeeeecC
Q 003217 490 LLGGWVAHSSPVIKMAVGAGYIFTLAN------HGGIRGWNVT 526 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~S~S~------DgtIrlWdl~ 526 (838)
++..+.+-...+..-.+||++++|+.+ |+++|||+..
T Consensus 348 ~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 348 LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999888888777899999998775 7899999964
No 259
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.96 E-value=0.00018 Score=80.05 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=91.3
Q ss_pred CcceeeecCCcEEEEec-cCc----cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEE
Q 003217 395 SRNAIMGAADAVRRVAA-KGG----FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT 467 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~-~g~----~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~ 467 (838)
+...++...||+..+|. .|. +......|.++++.|+.. ++-+-.+ .+.+=.+. ...+-..+.|.+-|.|+..
T Consensus 116 GtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W 194 (737)
T KOG1524|consen 116 GAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDGLVLSLSW 194 (737)
T ss_pred CceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEeccCcEEEEeec
Confidence 34456667788888887 342 334556788999999876 5544433 35555552 3334457789999999976
Q ss_pred c--CCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEeCCCEEEEEcCCCCee
Q 003217 468 F--GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 468 d--G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIr 521 (838)
+ ...|++|++|-..++||.-|+.+-+-..|.-+|++|++.+..++-.+.-+++|
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R 250 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR 250 (737)
T ss_pred CccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence 4 67999999999999999999988888999999999998766555444455555
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.94 E-value=0.0055 Score=77.97 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=137.1
Q ss_pred cCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 003217 141 TEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-~DGtIrv 217 (838)
.++.+|++ ..+.|++||......... +-.+..|-.+ .++.. .. -+.-..|+++++++.|+.+. ..+.|++
T Consensus 578 ~~g~lyVaDs~n~rI~v~d~~G~~i~~i----g~~g~~G~~d-G~~~~-a~-f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 578 LNNRLFISDSNHNRIVVTDLDGNFIVQI----GSTGEEGLRD-GSFED-AT-FNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred CCCeEEEEECCCCeEEEEeCCCCEEEEE----ccCCCcCCCC-Cchhc-cc-cCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35678874 467899999854321100 0000111000 01100 00 12346789999888666654 4568999
Q ss_pred EECCCCccCCCCCcceeEEecc--c---------------cccEEEEEEec-CCCE-EEeeCCCcEEEEECCCcceeeec
Q 003217 218 WKMNARLLDSDDGFGEVLSWQA--H---------------RGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~g--H---------------~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
+|..++ .+.++.+ . -..-+.|+|+| +|.| ++.+.++.|++||..++... .+
T Consensus 651 id~~~~---------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 651 IDFVNE---------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred EecCCC---------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 998774 2333211 0 01225799999 5665 57778899999998654211 11
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEE
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIEN 356 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (838)
...... . .. .+....... -.....++.++++..|+.+. .+.|++||+.++.......++...
T Consensus 721 ~G~G~~-~---------~~--~g~~~~~~~--~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~-- 784 (1057)
T PLN02919 721 SGDGYE-R---------NL--NGSSGTSTS--FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF-- 784 (1057)
T ss_pred ecCCcc-c---------cC--CCCcccccc--ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc--
Confidence 110000 0 00 000000000 01223466677777565544 368999999887642211111000
Q ss_pred eeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEE-E
Q 003217 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-T 435 (838)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~-S 435 (838)
+. ... .| |..++... . ........++++++|.++ +
T Consensus 785 ----~~-~l~-----------------------~f---------G~~dG~g~---~----~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 785 ----SD-NLF-----------------------KF---------GDHDGVGS---E----VLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ----Cc-ccc-----------------------cc---------cCCCCchh---h----hhccCCceeeEeCCCcEEEE
Confidence 00 000 00 00000000 0 001122367888999864 5
Q ss_pred EECCCeEEEEcCCCCeeeEeecCC--------------ccEEEEE--EcCCEEEEEeeCCeEEEEeCCC
Q 003217 436 GGANGLLLQWDPNGNRLQDFQYLP--------------FAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 436 gs~DgtIrlWD~~g~~l~tl~~H~--------------~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (838)
-+.++.|++||.++..+.++.+.. .....|+ .+|+.+++-+.+++|++||+++
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 556889999999654444444321 1234444 4687666666799999999874
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.0022 Score=73.82 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=35.1
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC---CcEEEEECCCcc
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIE 273 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D---gtIrvWd~~~~~ 273 (838)
.|.++|.+++ ....+..|...+.+.+|||||+ |+..+.+ ..|.+|++.+++
T Consensus 180 ~l~~~d~~g~---------~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~ 234 (430)
T PRK00178 180 TLQRSDYDGA---------RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR 234 (430)
T ss_pred EEEEECCCCC---------CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC
Confidence 4667777664 2344556778899999999997 6544433 358888987653
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.00012 Score=82.22 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=102.9
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
.+.+|+...|+-.|++.+.... ||.. . .++++|+..++-.++|+.|+.||.|..||..+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~-----------------P~~~--~-~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLN-----------------PFET--D-SGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred EEEeecCcceEEEEcccccccc-----------------cccc--c-cccceeeeecCccceEEecccCceEEEecchhh
Confidence 4444666788888888765432 3422 2 568999999999999999999999999998764
Q ss_pred ccCCCCCcceeEEeccccc-----cEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 224 LLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~-----~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.. -..+....+...|.+ .|+++.|+.||- ++.|..+|.|-++|+.+.+..+.-
T Consensus 208 sr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k------------------- 266 (703)
T KOG2321|consen 208 SR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK------------------- 266 (703)
T ss_pred hh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-------------------
Confidence 20 000000111123433 499999999995 899999999999999775433211
Q ss_pred ccceeccceeeeecCCeEEEEEc--CCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~--~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.|+. .-+++.+... ..+.+|+|.....++|||-.+|+......
T Consensus 267 -dh~~--------e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 267 -DHGY--------ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred -ccCC--------ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 1110 1123333332 23567777776789999999998765544
No 263
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.002 Score=69.13 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=79.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-ccccEEEEEEecCCC--EEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~--L~SgS~DgtIrvWd~ 269 (838)
-+.-+++.+---.++++..|-+||+++-... +...++. -+..|++|+|-|.+. |+.|.. +.|.+|..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst---------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~ 169 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST---------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSD 169 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC---------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEc
Confidence 3556777765556788999999999987652 2333433 256899999999874 777766 45999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELL 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l 345 (838)
...... ....+.+.+. ....++.. .+..|.++.-..++..+.+++. ..|.|||..+|..+
T Consensus 170 s~tln~---~r~~~~~s~~----~~qvl~~p---------gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 170 SRTLNA---NRNIRMMSTH----HLQVLQDP---------GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred Cccccc---cccccccccc----chhheeCC---------CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 542111 0000000000 00001111 1345788888888888888874 57999999998763
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.89 E-value=0.00061 Score=72.53 Aligned_cols=226 Identities=17% Similarity=0.217 Sum_probs=134.0
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~V~~la~s~dg~~LaSGs~DGtIrvW 218 (838)
...+|. +.|.++|||--.+.- +.+ .++.+ ..++.++.+.++.+.|+.|-..|++--+
T Consensus 36 e~gv~~~s~drtvrv~lkrds~----------------q~w----psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSG----------------QYW----PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred CCCeEEccccceeeeEEecccc----------------ccC----chhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 445665 778899999542211 111 11222 6689999999999999999999999888
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.+.... +.....+.+..|...|..+.|+..-+ ++|.+.|+.+ .|-.....+.+
T Consensus 96 s~sedf----nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~l--------------------- 149 (404)
T KOG1409|consen 96 ALSEDF----NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRL--------------------- 149 (404)
T ss_pred Ehhhhh----hhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcc---------------------
Confidence 776531 11123455789999999999998766 6789888765 34321100000
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (838)
++ ++....... .-.|+. ..|-++-
T Consensus 150 ------g~----------Y~~~~~~t~----------~~~d~~-----~~fvGd~------------------------- 173 (404)
T KOG1409|consen 150 ------GG----------YNFETPASA----------LQFDAL-----YAFVGDH------------------------- 173 (404)
T ss_pred ------cc----------eEeeccCCC----------CceeeE-----EEEeccc-------------------------
Confidence 00 000000000 000100 0000000
Q ss_pred ecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCC--CeeeE
Q 003217 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG--NRLQD 454 (838)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g--~~l~t 454 (838)
...+....+.+.....+. ++.+|...+.++.+.+... |.||..|..|.+||+-| .....
T Consensus 174 -----~gqvt~lr~~~~~~~~i~-------------~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 174 -----SGQITMLKLEQNGCQLIT-------------TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred -----ccceEEEEEeecCCceEE-------------EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 000000111111100000 1445667777888777544 78999999999999954 34566
Q ss_pred eecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 455 FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 455 l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+.+|.+.|..++. .-+++.|++.||.|.+||.+
T Consensus 236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 7799999998854 45799999999999999975
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.88 E-value=0.013 Score=65.17 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=48.6
Q ss_pred EEEcCCCc-EEEEE----------CCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCC-EEEEEe-eCCeEEEEeCC-
Q 003217 425 LTTSIDGM-IWTGG----------ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGS-QIWVGY-MNGIVQVLDLE- 487 (838)
Q Consensus 425 la~S~dg~-l~Sgs----------~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~-~LasGs-~DgtIrlWD~~- 487 (838)
+++++|+. ++... ..+.|.++|. +++.+..+.. ...+..| ++||+ +|++.. .++.|.+.|+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 77887765 55522 1247999999 7888887764 2345554 56899 888777 58899999987
Q ss_pred Ccccccc
Q 003217 488 GNLLGGW 494 (838)
Q Consensus 488 g~~i~~l 494 (838)
++.+++.
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 6666655
No 266
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.86 E-value=0.00074 Score=71.37 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCC-----eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC---
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGN-----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL--- 486 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~-----~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~--- 486 (838)
+++...+|.++|.+. +++||.-..|-+|-.+++ .-++-+.+.+.|+++.. .+-.|++|+.|+..||+..
T Consensus 99 iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 99 INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 344556777888776 899999999999987543 11223456778999976 4558999999999999861
Q ss_pred --C--------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 487 --E--------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 487 --~--------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+ |+++..+....++|..+.+ +|..|+..++|.+|.+=|...|.
T Consensus 179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1 2345666666788999875 58999999999999988766554
No 267
>PRK11756 exonuclease III; Provisional
Probab=97.84 E-value=6.1e-05 Score=81.01 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=68.6
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCEE
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 634 (838)
-+.|||+++.+.....+.+||.. .+|||+ +|||+......+ . .+.+ +.+ +..|.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi--~LQE~~~~~~~~-----------------~--~~~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVI--GLQETKVHDEMF-----------------P--LEEV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEE--EEEecccccccC-----------------C--HHHH-Hhc--CCEEE
Confidence 47799999765545667888885 456765 599985321100 0 0111 112 22222
Q ss_pred EEeeeecccEEEEEEEecCCcCccCceeeceeecccCc--ccCCCceeEEEEEEcCeEEEEEeccccCCc-----chHHH
Q 003217 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL-----EAVNR 707 (838)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~-----~~~~~ 707 (838)
.-+...-.| .+++.|..+. .+. .++.+ .....+.+.+++...+..+.|+|+|++.+. .+.+.
T Consensus 56 ~~~~~~~~G--vailSr~p~~----~~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYG--VALLSKQTPI----AVR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCE--EEEEECCChH----HeE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 112222234 5567887653 221 12211 112457888888876556999999997653 23334
Q ss_pred HHHHHHHHHHh
Q 003217 708 RNADFDHVYRT 718 (838)
Q Consensus 708 Rn~d~~~I~~~ 718 (838)
|.+.++.+...
T Consensus 125 r~~~~~~l~~~ 135 (268)
T PRK11756 125 KRQFYQDLQNY 135 (268)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 268
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00048 Score=74.47 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=118.7
Q ss_pred CCCCCccccCceeEEEEecCC--EEEE--ecC--CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEE
Q 003217 123 PHPLRETQIGCFLRTIVCTEE--QLWA--GGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC 196 (838)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~--~l~~--g~d--~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~ 196 (838)
..||.+-+.|.-+..+-.+.. .+.+ |-+ +.+++||+++...... +..--.+..-++- .-+++.
T Consensus 139 ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-------aKNvpnD~L~LrV----PvW~td 207 (412)
T KOG3881|consen 139 SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-------AKNVPNDRLGLRV----PVWITD 207 (412)
T ss_pred cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeee-------ccCCCCcccccee----eeeecc
Confidence 356666666666666654432 5555 446 7899999976543321 0000011111111 235667
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 197 MVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 197 la~s~d--g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
+.|-+. ...+|+++.=+.+|+||...+- ++..++.--..+|+++...|.|+ +++|-.-+.+..+|+.++.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR-------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC-------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 888776 7899999999999999998762 45555555578999999999998 6899999999999986643
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
...+. +++. ++.++.+...+....+++++ |.-+||+|+.|.+++.
T Consensus 281 l~g~~------------------~kg~----------tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 281 LLGCG------------------LKGI----------TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeccc------------------cCCc----------cCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 21110 0011 44567777777777888888 7899999999977654
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.84 E-value=0.015 Score=64.66 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=134.1
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-Eee---------CCCcEEEEECCCcceeeecCCC
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGS---------EGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS---------~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
++|-+.|.++. +.+.++..=..+-. + +||||+ |+ +.+ .+..|.+||+.+.+..-.+...
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 88999999886 44444432222222 4 999998 54 555 6899999999886543322211
Q ss_pred ce-eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 282 ER-HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 282 ~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
+. .... -.....++.++++..++... +..+.+.|+.+++++......+...
T Consensus 97 ~~p~~~~-----------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-- 151 (352)
T TIGR02658 97 EGPRFLV-----------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-- 151 (352)
T ss_pred CCchhhc-----------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE--
Confidence 11 0000 01122455677777777655 4689999999999988765422110
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee-eecCCcEEEEeccCccccCCCce-EEEEEcC-CCc-E
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI-MGAADAVRRVAAKGGFGDDNRRT-EALTTSI-DGM-I 433 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~-~g~~~~v~~v~~~g~~~~~~~~v-~ala~S~-dg~-l 433 (838)
+-.+....+.+ ...++.... .-..+|-........|..+...+ ..-.+++ ||+ +
T Consensus 152 vy~t~e~~~~~----------------------~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 152 IFPTANDTFFM----------------------HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EEEecCCccEE----------------------EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 00010000000 000000000 00000000000000000000000 0002234 676 4
Q ss_pred EEEECCCeEEEEcCCC------CeeeEeec-------CCcc--EEEEEEcCCEEEEEee----------CCeEEEEeCC-
Q 003217 434 WTGGANGLLLQWDPNG------NRLQDFQY-------LPFA--VQCLCTFGSQIWVGYM----------NGIVQVLDLE- 487 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~~g------~~l~tl~~-------H~~~--V~sls~dG~~LasGs~----------DgtIrlWD~~- 487 (838)
|.... |+|.+-|+.+ +.+..+.. .... ..++.++|+++++... .+.|.++|++
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 55554 9999999633 22222221 1112 2345568898888531 2579999987
Q ss_pred Cccccccc-ccccCEEEEE--eCCC-EEEEEc-CCCCeeeeecCCCCCCch
Q 003217 488 GNLLGGWV-AHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 488 g~~i~~l~-gH~~~V~sla--~dg~-~l~S~S-~DgtIrlWdl~s~~~~d~ 533 (838)
++.+..+. |+ .++.|+ +|++ .++... .++.|.+.|+.+...+..
T Consensus 289 ~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 289 GKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 56665543 54 566665 6888 777555 688899999877655443
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.83 E-value=0.00034 Score=73.34 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc------------ccEEEEEEecCC-C--E
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYG-D--L 255 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG-~--L 255 (838)
..-|++|.|+..|.+|++|.+.|.|.++.-+... ....+-...||+|. ..|..|.+-.++ + +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 4468999999999999999999999999765431 01111123467775 347777666554 3 4
Q ss_pred EEeeCCCcEEEEECC
Q 003217 256 WSGSEGGGIKIWPWE 270 (838)
Q Consensus 256 ~SgS~DgtIrvWd~~ 270 (838)
+-...|+|||+|.+-
T Consensus 103 LlstNdktiKlWKiy 117 (460)
T COG5170 103 LLSTNDKTIKLWKIY 117 (460)
T ss_pred EEecCCceeeeeeee
Confidence 555689999999974
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0033 Score=72.83 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=33.4
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCC--cEEEEECCCcc
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGG--GIKIWPWEAIE 273 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~Dg--tIrvWd~~~~~ 273 (838)
.+.++|.++. ....+..+...+.+..|||||+ |+..+ .++ .|.+||+.+++
T Consensus 199 ~l~i~d~dG~---------~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~ 253 (448)
T PRK04792 199 QLMIADYDGY---------NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV 253 (448)
T ss_pred EEEEEeCCCC---------CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence 5566677664 2334455677899999999998 65433 343 47777876643
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.83 E-value=3.9e-05 Score=56.38 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
|++++++.+|.+.|+++++ ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567777777777777754 466777777777777776
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.83 E-value=0.00059 Score=72.67 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCeeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCCCc--ccccccccccCEEEEE--eCCCEEEEEcCCCCeee
Q 003217 449 GNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGN--LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~--~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrl 522 (838)
-..+.++.+|.+.|.+++.|+ ..|.+|+.|..|-+||+-|+ ....+.+|.+.|..+. ..-+.++|++.||.|-+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 367888999999999999875 48999999999999998754 4678899999999886 45678999999999999
Q ss_pred eecC
Q 003217 523 WNVT 526 (838)
Q Consensus 523 Wdl~ 526 (838)
|+..
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9964
No 274
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.76 E-value=0.0083 Score=62.58 Aligned_cols=96 Identities=21% Similarity=0.389 Sum_probs=63.8
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCcc----E-------EEEEEcCCEEEEEeeCCe-EEEEeCC-Cccccccc
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA----V-------QCLCTFGSQIWVGYMNGI-VQVLDLE-GNLLGGWV 495 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~----V-------~sls~dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~ 495 (838)
++.++.+..++.|..+|+ +|+.+-.+..+... + ..+...+..++.++.++. +.+ |++ |+.+ |.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EE
Confidence 445777777888999998 78877666553322 1 122334448888887874 666 987 5533 33
Q ss_pred ccccCEEE-EEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 496 AHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 496 gH~~~V~s-la~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
.....+.. ...++..++.++.|+.|..||+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 33334555 5678888888889999999998775
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.74 E-value=0.0002 Score=74.70 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=79.7
Q ss_pred EEEcCCCc-EEEEECCCeEEEEcC-CC--CeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--Ccc-cccc
Q 003217 425 LTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNL-LGGW 494 (838)
Q Consensus 425 la~S~dg~-l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g~~-i~~l 494 (838)
+-+++-+. ++++-.+|.+-+-+. .. +..++++.|.-..+...++ .+.+++|+.|+.+..||+. ++. -+.-
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 44555554 667667777775444 33 3445788999888877653 5699999999999999986 444 3446
Q ss_pred cccccCEEEEE---eCCCEEEEEcCCCCeeeeecCC-CCC
Q 003217 495 VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTS-PGP 530 (838)
Q Consensus 495 ~gH~~~V~sla---~dg~~l~S~S~DgtIrlWdl~s-~~~ 530 (838)
+-|+..|.+|. +.+.++++||.|-.|++||.++ +.|
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 78999999997 4677999999999999999874 444
No 276
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=8e-05 Score=79.07 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=118.7
Q ss_pred CcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCC
Q 003217 99 DIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (838)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~ 178 (838)
++++|+.-.-.-+||++.| .+|-.|....+..|+-++...+-.+-+|.+..|-+-|++++...
T Consensus 185 ~e~~~~~s~~~~s~pe~n~---~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-------------- 247 (425)
T KOG2695|consen 185 NEGQFHISTYNQSLPESNN---YMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-------------- 247 (425)
T ss_pred cceEeehhhhhhccccCCC---CceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc--------------
Confidence 4555555555555655322 22233334444455544444444544577778888887764321
Q ss_pred CCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EE
Q 003217 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LW 256 (838)
Q Consensus 179 ~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~ 256 (838)
.|. . .+-|+++.|...+.+|.-|...|.|-+.|+..+.. .+ ....+-.-|..+|++|..-. +++ |.
T Consensus 248 ----sf~---s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--G~--~~~a~rlyh~Ssvtslq~Lq~s~q~Lm 315 (425)
T KOG2695|consen 248 ----SFQ---S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--GN--GWCAQRLYHDSSVTSLQILQFSQQKLM 315 (425)
T ss_pred ----ccc---c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--CC--CcceEEEEcCcchhhhhhhccccceEe
Confidence 121 2 55788899987789999999999999999977521 01 11112234788999997655 444 88
Q ss_pred EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-cEE
Q 003217 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFA 335 (838)
Q Consensus 257 SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-tI~ 335 (838)
+.+.+|+|++||+...++...+..-+ ++++.... .-+...+..+.|++++++ -.+
T Consensus 316 aS~M~gkikLyD~R~~K~~~~V~qYe------------------GHvN~~a~------l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 316 ASDMTGKIKLYDLRATKCKKSVMQYE------------------GHVNLSAY------LPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred eccCcCceeEeeehhhhcccceeeee------------------cccccccc------cccccccccceEEEccCeeEEE
Confidence 88899999999986544322111111 12222111 112234456677777754 578
Q ss_pred EEeccCccEEEEEe
Q 003217 336 LWDARTRELLKVFN 349 (838)
Q Consensus 336 lWD~~tg~~l~~l~ 349 (838)
+|.++.|+++.++.
T Consensus 372 iWsl~~ghLl~tip 385 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIP 385 (425)
T ss_pred EEecccCceeeccC
Confidence 99999999988764
No 277
>PRK05421 hypothetical protein; Provisional
Probab=97.71 E-value=0.00022 Score=76.45 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCceeEEEEEE-cCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 676 NKGAVGLRVRV-YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 676 nKG~v~i~~~i-~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
-||++.+.+.+ .+..+.++|+||.+.....+.|.+++..|.+.+
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 48999999998 567899999999876444577888888887754
No 278
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=97.70 E-value=0.00043 Score=74.98 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=52.8
Q ss_pred cccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHH
Q 003217 641 LAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDH 714 (838)
Q Consensus 641 l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~ 714 (838)
+..-.++|+.|-.+......+- ...||. ....+||.+.+++.+.+..+.|+|.||.+.. ..-..|.++++.
T Consensus 88 ~~~~G~~iLSr~Pi~~~~~~~f--~~~~~~-d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~ 164 (283)
T TIGR03395 88 LEDGGVAIVSKWPIEEKIQYIF--NKGCGA-DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNE 164 (283)
T ss_pred ccCCEEEEEECCCccccEEEEc--cCCCCC-ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHH
Confidence 4455678888877653321111 122332 2346899999999999999999999998753 225679999999
Q ss_pred HHHhc
Q 003217 715 VYRTM 719 (838)
Q Consensus 715 I~~~l 719 (838)
|.+-+
T Consensus 165 i~~~i 169 (283)
T TIGR03395 165 IQDFI 169 (283)
T ss_pred HHHHH
Confidence 97764
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.63 E-value=0.00012 Score=79.39 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=77.8
Q ss_pred ECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccc-cccccCEEEEEe-CCCE
Q 003217 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMAV-GAGY 510 (838)
Q Consensus 437 s~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla~-dg~~ 510 (838)
+....+.+|.+ ++.+ ..+.||-+.++.|+ +|+++|.++..|..||+=... .-.+.+| -||..-|..++. +++.
T Consensus 129 gD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~ 207 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL 207 (390)
T ss_pred CCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce
Confidence 34556778887 4544 44569999999875 588999999999999997755 3456665 479999999985 6777
Q ss_pred EEEEcCCCCeeeeecCCCCCCchhh
Q 003217 511 IFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 511 l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
|+|+|.|++||+||+.++..++..-
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccc
Confidence 8999999999999999988886543
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.59 E-value=0.008 Score=62.71 Aligned_cols=195 Identities=16% Similarity=0.244 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
+++.|++++.++.+..||..+| +...+..- .+.+.......++.++.++.|+.|..+|..+++...+....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--------~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--------KVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--------EEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccc
Confidence 4678888899999999999887 44443332 11111112344566888888899999998887665542110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
.. ..... .... ..+.. +..+..+. .+.|..+|+++|+.+-........
T Consensus 106 ~~------------------~~~~~----~~~~-~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~------ 154 (238)
T PF13360_consen 106 SS------------------PPAGV----RSSS-SPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR------ 154 (238)
T ss_dssp SS------------------CTCST----B--S-EEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-------
T ss_pred cc------------------ccccc----cccc-CceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC------
Confidence 00 00000 0000 01111 34444444 678999999999987655431100
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~Dg 440 (838)
.... +.. . ......+.+. ++.+..++.++
T Consensus 155 ----------------------~~~~--~~~--------~------------------~~~~~~~~~~-~~~v~~~~~~g 183 (238)
T PF13360_consen 155 ----------------------GSSP--ISS--------F------------------SDINGSPVIS-DGRVYVSSGDG 183 (238)
T ss_dssp ----------------------SS----EEE--------E------------------TTEEEEEECC-TTEEEEECCTS
T ss_pred ----------------------CCcc--eee--------e------------------cccccceEEE-CCEEEEEcCCC
Confidence 0000 000 0 0000012222 34666666676
Q ss_pred e-EEEEcC-CCCeeeEeecCCccEEE-EEEcCCEEEEEeeCCeEEEEeCC-Ccc
Q 003217 441 L-LLQWDP-NGNRLQDFQYLPFAVQC-LCTFGSQIWVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 441 t-IrlWD~-~g~~l~tl~~H~~~V~s-ls~dG~~LasGs~DgtIrlWD~~-g~~ 490 (838)
. +.+ |. +|+.+-... ...+.. ...++..|++++.++.|.+||++ |+.
T Consensus 184 ~~~~~-d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAV-DLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEE-ETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEE-ECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 4 555 88 666442222 233444 56688899999899999999987 553
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.14 Score=55.63 Aligned_cols=248 Identities=10% Similarity=0.123 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (838)
.+...=|+++|+++.|+++..+ |.|-.+.++...+ .-.+.....+.|+ +-+.|+++++|+ |++++ .-|.|.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G--~Lt~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG--RLTFLNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC--eEEEeeccccCCC--CCeEEEECCCCCEEEEEEccCceEE
Confidence 4456679999999999999876 5777777664210 0000011112333 227899999998 56665 458899
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~ 343 (838)
+..+............. .|...+...--.++.+.+.-+.+++..|++..- +.|.++++..|.
T Consensus 115 v~p~~~dG~l~~~v~~~----------------~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 115 VYPLQADGSLQPVVQVV----------------KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred EEEcccCCccccceeee----------------ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 99885421111000000 000000000001233556667777777777653 468899998776
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec-CCcEEEEec----cCc----
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAA----KGG---- 414 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~v~~v~~----~g~---- 414 (838)
+...-. . . + ++...-.-+.|.++++.+.+-. .+....++. .|.
T Consensus 179 L~~~~~----~----~-----------------v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 179 LTPADP----A----E-----------------V---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred cccccc----c----c-----------------c---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 532110 0 0 0 0000011234555554443322 112111211 111
Q ss_pred ---------cccCCCceEEEEEcCCCcEEEEEC--CCeEEEEcC--CCCeeeEeec---CCc--cEEEEEEcCCEEEEEe
Q 003217 415 ---------FGDDNRRTEALTTSIDGMIWTGGA--NGLLLQWDP--NGNRLQDFQY---LPF--AVQCLCTFGSQIWVGY 476 (838)
Q Consensus 415 ---------~~~~~~~v~ala~S~dg~l~Sgs~--DgtIrlWD~--~g~~l~tl~~---H~~--~V~sls~dG~~LasGs 476 (838)
|. ...+..+|.+++||+.+-+|. ...|.++.+ .+..+..... +.. +=..++.+|++|+++.
T Consensus 231 Q~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 231 QTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 21 234566788999999665553 236777766 3444433321 111 2224566788888877
Q ss_pred e-CCeEEEEeCC
Q 003217 477 M-NGIVQVLDLE 487 (838)
Q Consensus 477 ~-DgtIrlWD~~ 487 (838)
. +..|.++-.+
T Consensus 310 q~sd~i~vf~~d 321 (346)
T COG2706 310 QKSDNITVFERD 321 (346)
T ss_pred cCCCcEEEEEEc
Confidence 5 4578888654
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00014 Score=77.35 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=81.8
Q ss_pred CceEEEEEcC-CCcEEEEECCCeEEEEcC-C-----CCeeeEeecCCccEEEE---EEcCCEEEEEeeCCeEEEEeCC-C
Q 003217 420 RRTEALTTSI-DGMIWTGGANGLLLQWDP-N-----GNRLQDFQYLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 420 ~~v~ala~S~-dg~l~Sgs~DgtIrlWD~-~-----g~~l~tl~~H~~~V~sl---s~dG~~LasGs~DgtIrlWD~~-g 488 (838)
..|-++.|.. +..+.-|+.+|.|...|+ . |.|.+.+ .|.+.|+|+ .+++++|.+.+.+|+|+|||+. .
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 3444555544 445778999999999998 3 3465555 589999987 3478899998999999999986 5
Q ss_pred cc---cccccccccCEEEE----EeCCCEEEEEcCCCCeeeeecCCC
Q 003217 489 NL---LGGWVAHSSPVIKM----AVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 489 ~~---i~~l~gH~~~V~sl----a~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++ +.+..||.+.-.-+ ......+++++.|.-.|+|.+...
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 55 89999997644332 234567899999999999998764
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.53 E-value=0.069 Score=56.40 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=41.1
Q ss_pred ceEEEEEcCCCcEEEEE-CCCeEEEEcCCCCeeeEeecCCccEEEEEE---cCCEEEEEe
Q 003217 421 RTEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGY 476 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs-~DgtIrlWD~~g~~l~tl~~H~~~V~sls~---dG~~LasGs 476 (838)
....++++.+|.||++. ..+.|.++|.+|+.+..+......++++++ +.+.|++.+
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 35678899999988775 467799999999998888776567888887 445666644
No 284
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0058 Score=69.43 Aligned_cols=300 Identities=18% Similarity=0.311 Sum_probs=150.5
Q ss_pred CceeecCCCCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeE
Q 003217 117 PSLEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVM 195 (838)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~ 195 (838)
..+++.+.|+++ .+.++..+ ..+||+|+|.+|.+.+.+.-... ...++.+ ..-|.
T Consensus 195 kalql~s~~~dk-----~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~s---------------n~~~~lp----~~~I~ 250 (671)
T COG3292 195 KALQLASPPLDK-----AINALIADVQGRLWVGTDQGVYLQEAEGWRAS---------------NWGPMLP----SGNIL 250 (671)
T ss_pred eEEEcCCCcchh-----hHHHHHHHhcCcEEEEeccceEEEchhhcccc---------------ccCCCCc----chhee
Confidence 334555555553 33344444 55999999999999987542111 1122222 34577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc--cccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH--~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
.+.-|.+ +.+|.|+..|..|.--...+. .....+-| -..|.++..+.+|.||.++.++.+++=+-+-..
T Consensus 251 ll~qD~q-G~lWiGTenGl~r~~l~rq~L--------q~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ 321 (671)
T COG3292 251 LLVQDAQ-GELWIGTENGLWRTRLPRQGL--------QIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKR 321 (671)
T ss_pred eeecccC-CCEEEeecccceeEecCCCCc--------cccccccCCccccccceeeccCCCEeeeccCceEEEecchhhh
Confidence 6666654 568999999976543333321 11112222 357899999999999999999887765431110
Q ss_pred eeeecCCCceeeeEEEEeec-----e-------eecccceeccce-eee---ecCCeEEEEEcCCCCEEEEeCCC-cEEE
Q 003217 274 KALSLKPEERHTAALIVERS-----Y-------IDLRSHLSVNGF-SSI---LTSDIKNLLSDHSRAKVWSAGFL-SFAL 336 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s-----~-------~~l~~~~~~~~~-~~~---~s~~v~~las~~~~~~V~s~s~~-tI~l 336 (838)
..+.....+.......+..+ . ..+-..+..+.. .++ -...+..+..+. +.++|-++-+ ++..
T Consensus 322 ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsr 400 (671)
T COG3292 322 MAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSR 400 (671)
T ss_pred eeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhh
Confidence 00000000000000000000 0 000000000000 000 012233334443 6677777754 6777
Q ss_pred EeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC--
Q 003217 337 WDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-- 413 (838)
Q Consensus 337 WD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g-- 413 (838)
|+..+ +..+..-.+ ..++ +++ .+.-.+ ..+.|+|+.+|+.....++
T Consensus 401 l~n~n~~avlde~ag--------l~ss--------~V~--------------aived~-dnsLWIGTs~Glvk~~pe~~~ 449 (671)
T COG3292 401 LDNKNEWAVLDEDAG--------LPSS--------EVS--------------AIVEDP-DNSLWIGTSGGLVKRDPESGR 449 (671)
T ss_pred hccCCcccccccccC--------Cccc--------cee--------------eeeecC-CCCEEEeccCCeEecCccccc
Confidence 77665 222111000 0000 000 011111 2246889998887766421
Q ss_pred --------ccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCee-eEeecCCccEEEEEE-cCCEEEEEeeCCeEE
Q 003217 414 --------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRL-QDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 414 --------~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l-~tl~~H~~~V~sls~-dG~~LasGs~DgtIr 482 (838)
....+...+..+...++|.||.++.+| |..|+..++.. -.+.....+-+++.+ .+.++|.+..-|.+|
T Consensus 450 v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~~~~l~~~~q~qy~f~~~~~d~vw~~~~Rg~vr 527 (671)
T COG3292 450 VLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMFVPILDLTGQRQYSFVPVGGDEVWVHRLRGLVR 527 (671)
T ss_pred hhcccccccCcCCcchhhhhccCCCCceEEEecce-eeeeccccceecccccccceeeEEEEEccCceEeeeeeceeee
Confidence 111233457789999999999999998 89999866432 222222233334443 577888876544443
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.48 E-value=0.00052 Score=85.88 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEe---eCCeEEEEeCC--Cc--cc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY---MNGIVQVLDLE--GN--LL 491 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs---~DgtIrlWD~~--g~--~i 491 (838)
.+|..+.|+..|. ...+-.||.+-+|.+.-+.....+.|+.....+.+-|..+++++ .++.+.+||.- +. ++
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence 4455566666554 56667799999999987777778889998888888888888766 37899999953 33 45
Q ss_pred ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCC
Q 003217 492 GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (838)
Q Consensus 492 ~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (838)
. ++|.+.+++++. .-+.++|||.+|-|++||++.....+.+.. +. ...|...++.+..++.|.+.+
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--~~--~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--LD--TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--hh--hhheeeccCcccceEEEEccc
Confidence 5 899999999874 556899999999999999987655555443 22 455667777778888898874
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.45 E-value=0.024 Score=63.60 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCc---EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEee---CCeEEEEeCCCc--c
Q 003217 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---NGIVQVLDLEGN--L 490 (838)
Q Consensus 419 ~~~v~ala~S~dg~---l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~---DgtIrlWD~~g~--~ 490 (838)
...|..+.+.|.+. +++|-.+-++-++|+.|+....+-.....-..+++.+++++.++- .|.|.+||..|+ +
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 45677788888765 566678889999999988655443322222234677888888775 579999999875 4
Q ss_pred cccccccccCEEEEEeCCCEEEEEc------CCCCeeeeecCC
Q 003217 491 LGGWVAHSSPVIKMAVGAGYIFTLA------NHGGIRGWNVTS 527 (838)
Q Consensus 491 i~~l~gH~~~V~sla~dg~~l~S~S------~DgtIrlWdl~s 527 (838)
+..+.|.+..+..-.+|++++.+.- -|..|++|++..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5577777766666667888776543 488999999864
No 287
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.34 E-value=0.1 Score=58.23 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=114.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEeccc-----------cccEEEEEEecCCC-EEEe
Q 003217 192 SSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAH-----------RGPVLSLCISSYGD-LWSG 258 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~-DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-----------~~~V~slafs~dG~-L~Sg 258 (838)
.....++++|++++|+++.+ +|+|-++++.... .+........| .....++.|+|||+ ++..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g-----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG-----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc-----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 34556999999999999986 7899999998631 01111111111 23468899999998 5543
Q ss_pred -eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEE
Q 003217 259 -SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFA 335 (838)
Q Consensus 259 -S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~ 335 (838)
-....|.+++++.....+.. ...+ .+ -+-..-+.+++++++..++... ..+|.
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~------~~~~-------~~-----------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTP------VDSI-------KV-----------PPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEE------EEEE-------EC-----------STTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ecCCCEEEEEEEeCCCceEEE------eecc-------cc-----------ccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 33457899988653321211 0000 00 0012356778888877776665 35677
Q ss_pred EEecc--CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC
Q 003217 336 LWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (838)
Q Consensus 336 lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (838)
++++. ++.+ +... .+... +.
T Consensus 218 v~~~~~~~g~~-~~~~--------------------------~~~~~------------~~------------------- 239 (345)
T PF10282_consen 218 VFDYDPSDGSL-TEIQ--------------------------TISTL------------PE------------------- 239 (345)
T ss_dssp EEEEETTTTEE-EEEE--------------------------EEESC------------ET-------------------
T ss_pred EEeecccCCce-eEEE--------------------------Eeeec------------cc-------------------
Confidence 77765 3432 1110 00000 00
Q ss_pred ccccCCCceEEEEEcCCCc-EEE-EECCCeEEEEcCC---CC--eeeEeecCCccEEEE--EEcCCEEEEEe-eCCeEEE
Q 003217 414 GFGDDNRRTEALTTSIDGM-IWT-GGANGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQV 483 (838)
Q Consensus 414 ~~~~~~~~v~ala~S~dg~-l~S-gs~DgtIrlWD~~---g~--~l~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIrl 483 (838)
.+. .......++++|||+ |++ .-.+++|-+++++ |+ .++.+......-..+ .++|++|+++. .++.|.+
T Consensus 240 ~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 000 001344688999998 444 4356789999982 32 333443333334555 45899999887 4779999
Q ss_pred EeC
Q 003217 484 LDL 486 (838)
Q Consensus 484 WD~ 486 (838)
|++
T Consensus 319 f~~ 321 (345)
T PF10282_consen 319 FDI 321 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 288
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.32 E-value=0.15 Score=56.85 Aligned_cols=251 Identities=12% Similarity=0.162 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEEE
Q 003217 193 SVMCMVGDEASGVVWSGHR----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~----DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrv 266 (838)
....|+++|++++|++... +|.|-.|++.... ..+..+.+.......-..++++|+|+ |+++. .+|+|-+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 4456889999999999987 4688888877520 01122222221233456799999998 55554 6899999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCcc-
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRE- 343 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~- 343 (838)
+++.......... .. +...+.+..... -......++.+++++..|+... .+.|.++++....
T Consensus 114 ~~l~~~g~l~~~~------~~-------~~~~g~g~~~~r--q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 114 FPLDDDGSLGEVV------QT-------VRHEGSGPNPDR--QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp EEECTTSEEEEEE------EE-------EESEEEESSTTT--TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred EEccCCcccceee------ee-------cccCCCCCcccc--cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence 9996521111000 00 000000000000 0123456778888888887764 2467777765433
Q ss_pred -EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 344 -LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 344 -~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
+...- . +.. ......
T Consensus 179 ~l~~~~----------~-----------------~~~-------------------------------------~~G~GP 194 (345)
T PF10282_consen 179 KLTPVD----------S-----------------IKV-------------------------------------PPGSGP 194 (345)
T ss_dssp TEEEEE----------E-----------------EEC-------------------------------------STTSSE
T ss_pred eEEEee----------c-----------------ccc-------------------------------------ccCCCC
Confidence 21100 0 000 001123
Q ss_pred EEEEEcCCCc-EEEE-ECCCeEEEEcCC---C--CeeeEeecC------CccEE--EEEEcCCEEEEEee-CCeEEEEeC
Q 003217 423 EALTTSIDGM-IWTG-GANGLLLQWDPN---G--NRLQDFQYL------PFAVQ--CLCTFGSQIWVGYM-NGIVQVLDL 486 (838)
Q Consensus 423 ~ala~S~dg~-l~Sg-s~DgtIrlWD~~---g--~~l~tl~~H------~~~V~--sls~dG~~LasGs~-DgtIrlWD~ 486 (838)
+.++|+|||+ ++.. -.+++|.+++.. | +.++++... ..... .+++||++|+++.. ..+|-++++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 4567888876 4333 356778888773 2 122332211 11233 34678999998774 679999998
Q ss_pred C---Ccc--cccccccccCEEEEE--eCCCEEEEEc-CCCCeeeeecC
Q 003217 487 E---GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 487 ~---g~~--i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
. |++ +......-..-..++ ++|++|+.+. .+++|.+|++.
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3 333 333322223355565 5889887654 67789999864
No 289
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.31 E-value=0.032 Score=64.26 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=39.8
Q ss_pred EEEEcCCCc-EEEEECC---CeEEEEcCCCCeeeEeecCCccEE--EEEEcCCEEEEEee---CCeEEEEeCCCc
Q 003217 424 ALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM---NGIVQVLDLEGN 489 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~D---gtIrlWD~~g~~l~tl~~H~~~V~--sls~dG~~LasGs~---DgtIrlWD~~g~ 489 (838)
...+||||+ |+..+.+ ..|.+||+.+...+.+......+. ..++||++|+..+. ...|.+||+.+.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 456889887 5544432 369999995433344443322333 34568997775443 357888898754
No 290
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.0019 Score=68.51 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=25.7
Q ss_pred eEEEEEEeCCCCCCcccc-cccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQDAL-ISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l-~~wl~~~~~~~di~vig~QE~~~ 594 (838)
|-+.|||+++.......+ .+||.. .++||+ +|||+..
T Consensus 1 lri~t~Nv~g~~~~~~~~~~~~l~~--~~~DIv--~LQE~~~ 38 (255)
T TIGR00633 1 MKIISWNVNGLRARLHKLFLDWLKE--EQPDVL--CLQETKV 38 (255)
T ss_pred CEEEEEecccHHHHhhccHHHHHHh--cCCCEE--EEEeccC
Confidence 357899999876544555 677774 355664 6999864
No 291
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.17 E-value=0.05 Score=62.70 Aligned_cols=103 Identities=12% Similarity=-0.036 Sum_probs=58.7
Q ss_pred EEEEcCCCc-EEEEE-CCCeEEEEc--CC--CCeeeEeecCCccEE--EEEEcCCEEEEEeeC---CeEEEEeCCCcccc
Q 003217 424 ALTTSIDGM-IWTGG-ANGLLLQWD--PN--GNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLG 492 (838)
Q Consensus 424 ala~S~dg~-l~Sgs-~DgtIrlWD--~~--g~~l~tl~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~ 492 (838)
..++||||+ |+..+ .+|...+|. +. +...+.++.+...+. ..++||++|+..+.+ ..|.+||+++...+
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 356889987 66554 456555554 42 334455554444443 356799988876543 47999999854333
Q ss_pred cccccccCEEEE--EeCCCEEE-EEcCC--CCeeeeecC
Q 003217 493 GWVAHSSPVIKM--AVGAGYIF-TLANH--GGIRGWNVT 526 (838)
Q Consensus 493 ~l~gH~~~V~sl--a~dg~~l~-S~S~D--gtIrlWdl~ 526 (838)
.+......+... ++||++|+ ++..+ ..|.+|++.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 443322233333 35888776 44333 346666654
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.16 E-value=0.097 Score=59.54 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=62.0
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc--cccccCEEEEE
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW--VAHSSPVIKMA 505 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l--~gH~~~V~sla 505 (838)
++.++.++.+|.+...|. +|+.+=.... .....+..++.+|+.++.+|.|..+|.+ |+.+=.. ..+ ....+..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~ 332 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPV 332 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCE
Confidence 677888888999999999 7875533221 1222345678889999999999999987 5532111 111 1122223
Q ss_pred eCCCEEEEEcCCCCeeeeecCC
Q 003217 506 VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 506 ~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+.+++.++.||.|.+.|..+
T Consensus 333 v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 333 LYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EECCEEEEEeCCCEEEEEECCC
Confidence 3466788888999988887654
No 293
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.14 E-value=0.008 Score=64.26 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=64.6
Q ss_pred eEEEEEcCCC--cEEEEECCCeEEEEcCCC--Cee---eEeecCC------------ccEEEEEE--cCCEEEEEeeCCe
Q 003217 422 TEALTTSIDG--MIWTGGANGLLLQWDPNG--NRL---QDFQYLP------------FAVQCLCT--FGSQIWVGYMNGI 480 (838)
Q Consensus 422 v~ala~S~dg--~l~Sgs~DgtIrlWD~~g--~~l---~tl~~H~------------~~V~sls~--dG~~LasGs~Dgt 480 (838)
|++-.|+|.. .++-.|.-|+|||-|+.. -|. +.|.... ..|..+.+ +|++|++-+. -+
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 3444566643 345556689999999842 222 2222111 23334433 6889988532 59
Q ss_pred EEEEeCC--Ccccccccccc------------cCEEE---EEeC--CCEEEEEcCCCCeeeeecCC
Q 003217 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAVG--AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 481 IrlWD~~--g~~i~~l~gH~------------~~V~s---la~d--g~~l~S~S~DgtIrlWdl~s 527 (838)
|+|||+. .+++.+..-|. +.|.. +.+. +.+++|||..+..|++++..
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 9999985 56677666664 33322 2344 44899999999999998544
No 294
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0059 Score=64.05 Aligned_cols=115 Identities=13% Similarity=0.270 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~ 271 (838)
-.|+.+++.+..++++-.+|.+-+-+... ...+..+.|++|.-..+...|+... + ++|||+|+.+.-||...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~------~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce------eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 45788888899999999999987444333 2335566899999999999998654 4 57999999999999862
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc-CCCCEEEEeCC-CcEEEEeccC
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD-HSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~-~~~~~V~s~s~-~tI~lWD~~t 341 (838)
.+.+..+. ...+..| |.++.++ +....|++|++ ..|++||.+.
T Consensus 198 -p~~~i~~n------------------~kvH~~G--------V~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 198 -PKTFIWHN------------------SKVHTSG--------VVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred -Ccceeeec------------------ceeeecc--------eEEEecCCCCCceEEEeccccceeeeehhc
Confidence 11222111 1123333 3344443 34567888885 6899999874
No 295
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=97.02 E-value=0.004 Score=66.34 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=26.4
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
|-+.|||+++.+.....+..||.. .++||+ +|||+..
T Consensus 1 mri~t~Ni~g~~~~~~~~~~~l~~--~~~DIi--~LQE~~~ 37 (254)
T TIGR00195 1 MKIISWNVNGLRARLHKGLAWLKE--NQPDVL--CLQETKV 37 (254)
T ss_pred CEEEEEEcCcHHHhHHHHHHHHHh--cCCCEE--EEEeccc
Confidence 357899999876555566778875 456665 5999864
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.068 Score=62.05 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCC-------CCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD-------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~-------~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (838)
....|+.|....++||.|+.||..+|-.+++...+.. ..+..-+++.||.+.|.-+.+....+ |-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 3578999999999999999999999999887542111 12222357899999999999998766 667778999
Q ss_pred EEEEECC
Q 003217 264 IKIWPWE 270 (838)
Q Consensus 264 IrvWd~~ 270 (838)
|-||-+-
T Consensus 95 IiVWmly 101 (1189)
T KOG2041|consen 95 IIVWMLY 101 (1189)
T ss_pred EEEEeee
Confidence 9999873
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.96 E-value=0.96 Score=50.75 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG-tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.+.|.-..+..+++-++.|..|| .+-++|..++ +...+.+.-+.|.+|..++||+ ++.+-.-..|-+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCc---------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 44566666766777899999999 8999999986 3455566678899999999999 55665556777778
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l 348 (838)
++++...+.-..+...... + .-+.+.+++|.+-..+.+ -+.|+|+|+.+++...+-
T Consensus 430 idngnv~~idkS~~~lItd------------------f--~~~~nsr~iAYafP~gy~----tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITD------------------F--DWHPNSRWIAYAFPEGYY----TQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ecCCCeeEecccccceeEE------------------E--EEcCCceeEEEecCccee----eeeEEEEecCCCeEEEec
Confidence 8775433221111111111 1 113444555543222111 157999999998875543
No 298
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=96.90 E-value=0.0071 Score=62.60 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=33.3
Q ss_pred eEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 680 VGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 680 v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
-.+...|.+..+||+++||.+-.+.--+|.++|...+.++
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~ 234 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKM 234 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHH
Confidence 3456677888999999999998888888999999887775
No 299
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.15 Score=58.01 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=55.8
Q ss_pred EEEEEcCCCcE-E-EEEC--CCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEee------CCeEEEEeCCCccc
Q 003217 423 EALTTSIDGMI-W-TGGA--NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM------NGIVQVLDLEGNLL 491 (838)
Q Consensus 423 ~ala~S~dg~l-~-Sgs~--DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~------DgtIrlWD~~g~~i 491 (838)
.++.|+|.|.+ + .|-+ -|.|-+||+ +-+++..+..-...+..-++||+++++++. |+.|+||+..|.++
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 46789999984 3 3433 378999999 778898888877777777899999988873 89999999998764
Q ss_pred c
Q 003217 492 G 492 (838)
Q Consensus 492 ~ 492 (838)
.
T Consensus 395 ~ 395 (566)
T KOG2315|consen 395 H 395 (566)
T ss_pred e
Confidence 4
No 300
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=96.83 E-value=0.012 Score=62.64 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=27.6
Q ss_pred eEEEEEEeCCCCCCc-ccccccccCCCCCceEEEEEeecccCc
Q 003217 554 ILAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEMG 595 (838)
Q Consensus 554 i~~~twNv~~~~~~~-~~l~~wl~~~~~~~di~vig~QE~~~~ 595 (838)
|-+.|||||+-+... ..+.+||.. .+||| |+|||.-+.
T Consensus 1 mki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~~ 39 (250)
T PRK13911 1 MKLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKMQ 39 (250)
T ss_pred CEEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeeccc
Confidence 347899999887644 358889985 45665 579998653
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.78 E-value=0.0016 Score=67.15 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=60.3
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-C-CEEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-G-DLWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G-~L~SgS~DgtIrvWd~ 269 (838)
.|.|++-+|. ..++..|+.||.+-+||+.... ...-.+++|+.+|+-|-|.|. + +|+++|+||.+--||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 4999999885 4678889999999999998752 444557899999999999985 3 3999999999999987
Q ss_pred CC
Q 003217 270 EA 271 (838)
Q Consensus 270 ~~ 271 (838)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 54
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.74 E-value=0.0048 Score=71.41 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=52.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCCEEEeeCCCcEEEEECCC
Q 003217 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 196 ~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~L~SgS~DgtIrvWd~~~ 271 (838)
-|.++- ++..+|+ +....|++||...|. ..+..+++|...|+++.|.. .+.+++.+.|+|||.||.+.
T Consensus 163 qVkwnyk~p~vlas-shg~~i~vwd~r~gs-------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLAS-SHGNDIFVWDLRKGS-------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eeeecccCcchhhh-ccCCceEEEeccCCC-------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 355543 3345554 455679999998874 56778899999999999976 46699999999999999854
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.73 E-value=0.98 Score=47.57 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCc-EE-EEECCCeEEEEcCC--CCee---eEe---ecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCC
Q 003217 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDPN--GNRL---QDF---QYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~-Sgs~DgtIrlWD~~--g~~l---~tl---~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~ 487 (838)
.....+++++|+. |+ +-+..+.|..++.. +..+ +.+ ..-.+..-.++.|.. .||++. ..+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 4456799999997 54 55567788888872 3312 222 222223556777532 556554 58899999999
Q ss_pred CcccccccccccCEEEEEe
Q 003217 488 GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 488 g~~i~~l~gH~~~V~sla~ 506 (838)
|+++..+......++++++
T Consensus 214 G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEE
T ss_pred ccEEEEEcCCCCCEEEEEE
Confidence 9988877777668888887
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.71 E-value=0.23 Score=57.11 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=45.7
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCC--cE
Q 003217 193 SVMCMVGDEASGV-VWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--GI 264 (838)
Q Consensus 193 ~V~~la~s~dg~~-LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--tI 264 (838)
....-.|+|||+. ++..+.+ ..|.++|+.++. ...+....+.+.+..|||||+ | ++.+.++ .|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6678899999984 7765554 357788888862 222222455566778999997 4 4555554 45
Q ss_pred EEEECCCc
Q 003217 265 KIWPWEAI 272 (838)
Q Consensus 265 rvWd~~~~ 272 (838)
-++++.++
T Consensus 260 y~~dl~~g 267 (419)
T PRK04043 260 YLYDTNTK 267 (419)
T ss_pred EEEECCCC
Confidence 55566543
No 305
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=96.70 E-value=0.014 Score=62.66 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=66.1
Q ss_pred eeEEEEEEeCCCCCCc---ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCC
Q 003217 553 KILAGTWNVGQGRASQ---DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD 629 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~---~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~ 629 (838)
.+.++|||+-.-.... ....+.+......+|| ||+||+.-..+ .+.+ .-.+.|.+. .
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~~~DI--iglQEV~d~q~----~~l~------------~ll~~Ln~~--~ 76 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDI--ALVQEVRDSDL----SAVP------------KLMDQLNSD--S 76 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhccCCE--EEEEEeecchh----HHHH------------HHHHHHhhc--C
Confidence 4889999996221111 1112222222235676 58999853211 0111 012223322 2
Q ss_pred CCCEEEEeeeecc----cEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCe---EEEEEeccccCC
Q 003217 630 GSTFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAH 701 (838)
Q Consensus 630 ~~~y~~v~s~~l~----g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~ 701 (838)
+..|..+++..++ +-...+|-|++....+..-.....+-|... .=..=...++|+...+ .|.+||+|+...
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 3478888887664 467778888875433322111100001111 1134456677777664 799999999874
No 306
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.69 E-value=0.02 Score=60.91 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=43.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCC
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~ 271 (838)
..|||+|++|||.+.- .+.+-|.++- +..+.+. --..|.-+-+..|.. |-..+.|+.|-+|++..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--------QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--------hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeec
Confidence 4689999999999876 5556666652 1111110 023455667777765 45788999999999854
No 307
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.62 E-value=0.0042 Score=43.05 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.2
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
+....+.+|...|+++.+.+++. +++|+.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44567789999999999999877 68999999999996
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.61 E-value=0.19 Score=53.07 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=45.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-ccccEEEEEEecCC-------CEEEeeCCCcEEE
Q 003217 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYG-------DLWSGSEGGGIKI 266 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG-------~L~SgS~DgtIrv 266 (838)
.-|+||||+.+||.+...|+|+++|+.+... ........+.+ -..+|.+|.|.+.- +|+.-..+|.+|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee---EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3589999999999999999999999987421 00000011111 14678888887643 2444445555555
Q ss_pred EEC
Q 003217 267 WPW 269 (838)
Q Consensus 267 Wd~ 269 (838)
+-+
T Consensus 124 y~v 126 (282)
T PF15492_consen 124 YLV 126 (282)
T ss_pred EEE
Confidence 543
No 309
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.18 Score=57.85 Aligned_cols=110 Identities=21% Similarity=0.427 Sum_probs=69.9
Q ss_pred CCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC
Q 003217 126 LRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG 204 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~ 204 (838)
-|+.-.+.++.+|..+ .+.||++++.++..+|..+++... -+..|+ .-+|..++.|- ++
T Consensus 158 ~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalq-------------l~s~~~------dk~I~al~~d~-qg 217 (671)
T COG3292 158 VRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQ-------------LASPPL------DKAINALIADV-QG 217 (671)
T ss_pred ccccccCccceeeeeeccCcEEEecCCcceEEccccceEEE-------------cCCCcc------hhhHHHHHHHh-cC
Confidence 3555566778888887 449999999999999987654332 111222 12566666664 45
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCCEEEeeCCCcEE
Q 003217 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIK 265 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~SgS~DgtIr 265 (838)
.||.|+.+|.. +-+.++. ....+ .-..+.|+.+.-+..|.+|.|++.|..|
T Consensus 218 ~LWVGTdqGv~-~~e~~G~---------~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r 270 (671)
T COG3292 218 RLWVGTDQGVY-LQEAEGW---------RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWR 270 (671)
T ss_pred cEEEEeccceE-EEchhhc---------cccccCCCCcchheeeeecccCCCEEEeeccccee
Confidence 68999999943 3333331 01110 0124567777777788899999887554
No 310
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=96.51 E-value=0.025 Score=59.64 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.3
Q ss_pred ccCceeeceeec--ccCcccCCCceeEEEEEEc-CeEEEEEeccccCCcchHHHHHHHHHHHHHh
Q 003217 657 YVGDVDVAAVPC--GFGRAIGNKGAVGLRVRVY-DRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (838)
Q Consensus 657 ~i~~v~~~~v~~--G~~~~~gnKG~v~i~~~i~-~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~ 718 (838)
.|.+|+...+++ |+- -.|++-+.+... +..+-++|.||.= --+.|.++.+.|+..
T Consensus 101 pi~~v~~~~lp~~~~~~----~Rgal~a~~~~~~g~~l~V~~~HL~l---~~~~R~~Q~~~L~~~ 158 (259)
T COG3568 101 PIRDVENLALPDPTGLE----PRGALLAEIELPGGKPLRVINAHLGL---SEESRLRQAAALLAL 158 (259)
T ss_pred cccchhhccCCCCCCCC----CceeEEEEEEcCCCCEEEEEEEeccc---cHHHHHHHHHHHHhh
Confidence 356777666664 442 478999999884 7799999999993 345688899888883
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.50 E-value=0.75 Score=49.86 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=40.9
Q ss_pred EEEcC-CCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE-----eeCCCcEEEEE
Q 003217 197 MVGDE-ASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-----GSEGGGIKIWP 268 (838)
Q Consensus 197 la~s~-dg~~LaSGs~DGt-IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-----gS~DgtIrvWd 268 (838)
++.+| ....++-+-.-|+ ..+||..++..-..-....-+.|-|| -+||+||+ |++ .+..|.|-|||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 45566 4566777777775 45788877620000000112344566 47999998 554 34468999999
Q ss_pred CC
Q 003217 269 WE 270 (838)
Q Consensus 269 ~~ 270 (838)
+.
T Consensus 84 ~~ 85 (305)
T PF07433_consen 84 AA 85 (305)
T ss_pred Cc
Confidence 97
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.56 Score=55.45 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=75.1
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC------------CCEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------------SGVVWS 208 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d------------g~~LaS 208 (838)
...|++ |+.+.|-|-|..+.+.... -..| .+.|+.+.|.|. .-+||+
T Consensus 25 ~~GLiAygshslV~VVDs~s~q~iqs-------------------ie~h-~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 25 PSGLIAYGSHSLVSVVDSRSLQLIQS-------------------IELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccceEEEecCceEEEEehhhhhhhhc-------------------cccC-ccceeEEEeccCCCchhccCccccceeEEe
Confidence 345665 7778888888765544321 0122 556666666652 126888
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC---CC--EEEeeCCCcEEEEECCCcceeeecC
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD--LWSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d---G~--L~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
+...|.|.+||...+ ..+..++.|..+|..|++-+. .+ |+.=..-.+|-+|+.+++++.++..
T Consensus 85 aD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 888999999999886 345567788999999998763 32 4443445689999999988766554
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.39 E-value=1.2 Score=47.17 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc---cEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
++.+++|++||. -.|..|.+-....+- . ..+.+.+-+++ .=.-++||||+. |+-+...|+|+++|+.+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf----~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDF----S--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCc----h--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 455667777765 456666665544421 0 01122222221 235789999999 57788889999999964
No 314
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.021 Score=60.29 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=63.6
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCC-CE
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS-TF 633 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~-~y 633 (838)
-+.|||||+-+.-...+.+||... .|| ||||||+-....-+.. ..+. .+ |. .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~~--~pD--VlclQEtK~~~~~fp~-------------------~~~~-~~--GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEEE--QPD--VLCLQETKAQDEQFPR-------------------EELE-AL--GYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHHh--CCC--EEEEEecccCcccCCH-------------------hHHh-hC--CceEE
Confidence 478999998877666688999963 345 4689998643321110 0111 11 22 23
Q ss_pred EEEeeeecccEEEEEEEecCCcCccCceeeceeecccCccc-CCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAI-GNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~-gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
..-+.+.-.|+ ++++|.... .|..|+++.- -..=+=.|...+.+ |.++|.=+++++.
T Consensus 56 ~~~gqKgysGV--ailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGV--AILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceE--EEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 33333444444 567777654 5567776521 11223345555555 8888999988875
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.11 Score=56.94 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=62.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
+..|..++|+|..+ +|..++.+.+|++.|+++. -...++.+| ..+++++|+-|.. |+.|-..|.|-|+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 56799999999775 8999999999999999996 345566777 7999999998875 8899999999999
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
|+..
T Consensus 264 D~R~ 267 (463)
T KOG1645|consen 264 DMRQ 267 (463)
T ss_pred EccC
Confidence 9965
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.20 E-value=0.021 Score=65.57 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|.|++++|+.+.|+.|..||.|++||...+ ..++.-+.=..+.++++|+|. ++.||.-|-+.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 568999999999999999999999999998774 222223344568899999998 578999999999998
Q ss_pred CC
Q 003217 270 EA 271 (838)
Q Consensus 270 ~~ 271 (838)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 54
No 317
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.19 E-value=2.6 Score=46.11 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecccccc----------EEEEEEecCCC-EEEee-
Q 003217 193 SVMCMVGDEASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQAHRGP----------VLSLCISSYGD-LWSGS- 259 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~D-GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~----------V~slafs~dG~-L~SgS- 259 (838)
+-.-+++|++|+.|+++.+- |.|.+.-+... ...........|.++ +.+..|+|+|+ |++..
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-----G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-----GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccC-----CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 34679999999999999866 68999988652 011222233455555 88999999998 56554
Q ss_pred -CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEE
Q 003217 260 -EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (838)
Q Consensus 260 -~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~l 336 (838)
.| .|.+++++.+.. +-. ... . + -+...-+.+++.+++..+.... +.+|.+
T Consensus 165 G~D-ri~~y~~~dg~L--~~~--~~~---------------~-----v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 165 GTD-RIFLYDLDDGKL--TPA--DPA---------------E-----V--KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CCc-eEEEEEcccCcc--ccc--ccc---------------c-----c--CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 34 578888864321 100 000 0 0 0122346677777777666665 468999
Q ss_pred EeccC
Q 003217 337 WDART 341 (838)
Q Consensus 337 WD~~t 341 (838)
|....
T Consensus 218 ~~y~~ 222 (346)
T COG2706 218 LEYNP 222 (346)
T ss_pred EEEcC
Confidence 98876
No 318
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.11 E-value=2.4 Score=47.76 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCc-EEEEECCC-eEEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 420 RRTEALTTSIDGM-IWTGGANG-LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~Dg-tIrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
..|.-.-+..++. ++.|..|| .+-++|..|-..+.+...-+.|-++. ++|++++++-....|.+.|++ |+....-
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 3344444444443 77888888 89999997767777777778888874 579999998777788888887 6665555
Q ss_pred cccccCEEEEEe--CCCEEEEEc----CCCCeeeeecCC
Q 003217 495 VAHSSPVIKMAV--GAGYIFTLA----NHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S----~DgtIrlWdl~s 527 (838)
+...+-|+.+.+ ++++++-+= .-..|+++|+..
T Consensus 440 kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 440 KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 566677887775 455666332 234577776543
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.97 E-value=2.2 Score=48.97 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=51.6
Q ss_pred EEcCCCc-EEEEEC-CC--eEEEEcCC-CCeeeEeecCCccEEEEEEcCCEEEEEeeC---------CeEEEEeCCCccc
Q 003217 426 TTSIDGM-IWTGGA-NG--LLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---------GIVQVLDLEGNLL 491 (838)
Q Consensus 426 a~S~dg~-l~Sgs~-Dg--tIrlWD~~-g~~l~tl~~H~~~V~sls~dG~~LasGs~D---------gtIrlWD~~g~~i 491 (838)
.++|||+ |+-.+. .+ .|.+.|+. |+. +.+.........+++||++|+..+.. ..|.+.|+++...
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-EQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCe-EeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 3677775 544332 22 57777884 443 22322111223678899977765543 3678888874433
Q ss_pred cccccc-ccCEEEEEeCCCEEEEEcC-CCCeeeeec
Q 003217 492 GGWVAH-SSPVIKMAVGAGYIFTLAN-HGGIRGWNV 525 (838)
Q Consensus 492 ~~l~gH-~~~V~sla~dg~~l~S~S~-DgtIrlWdl 525 (838)
+.++.. ...--+.++||+.++-.+. .+.-.+|-+
T Consensus 362 ~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 362 RRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 333322 1122345678887664443 333344443
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=1.8 Score=49.53 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCc---EEEEECC-CeEEEEcCC--C---CeeeEeecCCccEEE--EEEcCCEEEEEe---eCCeEEEEeC
Q 003217 421 RTEALTTSIDGM---IWTGGAN-GLLLQWDPN--G---NRLQDFQYLPFAVQC--LCTFGSQIWVGY---MNGIVQVLDL 486 (838)
Q Consensus 421 ~v~ala~S~dg~---l~Sgs~D-gtIrlWD~~--g---~~l~tl~~H~~~V~s--ls~dG~~LasGs---~DgtIrlWD~ 486 (838)
.|.+.++.|.|. +++|-+. .++.++-++ + +.+.+|.. ...+. .++-|++++++. ..|.+..+|+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 455677778775 4555432 478888773 2 23444432 12233 367799888766 4689999998
Q ss_pred C-CcccccccccccCEEEEEe--CCCEEEEEcC------CCCeeeeecC
Q 003217 487 E-GNLLGGWVAHSSPVIKMAV--GAGYIFTLAN------HGGIRGWNVT 526 (838)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~------DgtIrlWdl~ 526 (838)
. ..+..+-..-...-+.+.+ .|+|++++|+ |.+-|+|+++
T Consensus 525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 7 3443332222223445655 4678887764 6677888865
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.85 E-value=0.25 Score=45.31 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=61.5
Q ss_pred EcCCCc--EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEE
Q 003217 427 TSIDGM--IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503 (838)
Q Consensus 427 ~S~dg~--l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~s 503 (838)
+..||. |+.||.|..||+|+-. +.+.+++. .+.|++|.. .+.+++-|-.+|||-+++-..++-+.-..|. +.+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~~--~~~ 85 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKNQ--VTS 85 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCCC--eEE
Confidence 344543 9999999999999854 56666654 567888866 4568888899999999997544444333333 666
Q ss_pred EE-eC----CC-EEEEEcCCCCe
Q 003217 504 MA-VG----AG-YIFTLANHGGI 520 (838)
Q Consensus 504 la-~d----g~-~l~S~S~DgtI 520 (838)
+. .| |. -|++|=.+|.|
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEcCCCCCceEEEEEecCCeE
Confidence 65 22 22 46677666654
No 322
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=95.62 E-value=0.06 Score=63.77 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=23.1
Q ss_pred eEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
..||++|+||-.+...-.-|..+...|++.+
T Consensus 417 ~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l 447 (606)
T PLN03144 417 QLLCVANTHIHANQELKDVKLWQVHTLLKGL 447 (606)
T ss_pred cEEEEEEeeeccCCccchhHHHHHHHHHHHH
Confidence 3699999999777665556667777777765
No 323
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.51 E-value=0.016 Score=59.93 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=55.0
Q ss_pred cEEEEEEc---CCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecC
Q 003217 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 461 ~V~sls~d---G~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~ 526 (838)
.|.+++.+ ...+++|+.||.|-|||.. ..+...+++|..+++.|-+ +|..|+++|.||.+.-||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 37777653 3478889999999999986 3467788999999999986 57789999999999999954
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.99 Score=54.18 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCcE--EEEECCCeEEEEcCCCCe--eeEeecCCccEEEEEE-cCCE-EEEEeeCCeEEEEeCCC-cccc
Q 003217 420 RRTEALTTSIDGMI--WTGGANGLLLQWDPNGNR--LQDFQYLPFAVQCLCT-FGSQ-IWVGYMNGIVQVLDLEG-NLLG 492 (838)
Q Consensus 420 ~~v~ala~S~dg~l--~Sgs~DgtIrlWD~~g~~--l~tl~~H~~~V~sls~-dG~~-LasGs~DgtIrlWD~~g-~~i~ 492 (838)
..|+.+++-.|++. .+++. ..|.++.++|+- +..+..|...++|.++ +++. +++| .+..|.+||..+ +..-
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCF 249 (933)
T ss_pred CCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceee
Confidence 34566777667663 44444 459999997755 5667778888998876 4554 4443 466899999875 3444
Q ss_pred ccc-ccccCE
Q 003217 493 GWV-AHSSPV 501 (838)
Q Consensus 493 ~l~-gH~~~V 501 (838)
.+. ||....
T Consensus 250 af~~g~kk~~ 259 (933)
T KOG2114|consen 250 AFEVGEKKEM 259 (933)
T ss_pred eecCCCeEEE
Confidence 554 665443
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.47 E-value=0.036 Score=38.07 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=22.6
Q ss_pred CeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEe
Q 003217 450 NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD 485 (838)
+++..+..|...|+++... +.++++|+.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455566666666666543 45666666777777765
No 326
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.40 E-value=0.033 Score=57.00 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=67.9
Q ss_pred CcEEEEECCCeEEEEcCC--CCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Ccccccccccc-cCEEE
Q 003217 431 GMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVIK 503 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~~--g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-~~V~s 503 (838)
..++.|+.+|.|.+|..+ |.....+..-.+.|-+..+ ++.+.++|..||.||.|+.. ++.+..-..|+ .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 458889999999999885 4433333333455666555 35589999999999999987 66666666777 45544
Q ss_pred EE--eCCCEEEEE--cCCCCeeeeecCC
Q 003217 504 MA--VGAGYIFTL--ANHGGIRGWNVTS 527 (838)
Q Consensus 504 la--~dg~~l~S~--S~DgtIrlWdl~s 527 (838)
+. ..+..+.++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 33 245566666 8888888888754
No 327
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.28 E-value=1 Score=47.26 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
+.++++|+|++++++-+.-..|-.+.++... ...+......-++.=.+..|+.... +++++.||++.|||+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s-----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES-----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCcc-----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 7889999999999999988888889887642 1111112223344556778888765 68999999999999965
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.20 E-value=0.06 Score=64.30 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003217 433 IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (838)
++-|+-...+...|.. ++..++.......|.-+...++.+.+|...|+|-|-|++ -+.++++.+|++.|..+...|+.
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNl 229 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNL 229 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCe
Confidence 4444444557778884 455555555555577778899999999999999999998 57899999999999999999999
Q ss_pred EEEEcC---------CCCeeeeecCCC
Q 003217 511 IFTLAN---------HGGIRGWNVTSP 528 (838)
Q Consensus 511 l~S~S~---------DgtIrlWdl~s~ 528 (838)
|+|+|. |.-|++||++..
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhhh
Confidence 999874 667999998753
No 329
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.07 E-value=1.4 Score=51.82 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=67.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCc--eeeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF--KESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~g-~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~ 224 (838)
|.||-++|--+.+...-.. .+|-.....+ -+.+.| ..+|.-+.|..+.+.|-|...+|.|.||=+-.|.
T Consensus 33 G~dGlLKVlKl~t~t~d~~--------~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 33 GADGLLKVLKLGTDTTDLN--------KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cccceeEEEEccccCCccc--------ccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 7899999998865433221 1121111111 111222 7899999999999999999999999999887652
Q ss_pred cCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+.+...-...+..|.+|++..||+ +...-+||.|-|=.+
T Consensus 105 ------W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 105 ------WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ------HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 011111112346788999998886 555566665554444
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.00 E-value=8 Score=45.88 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=76.4
Q ss_pred eEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
++++..+.+.+..|+ -|.|.+++-....... .+ ..+. .+.+..+.++++..++|.|+..|
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------------~~--~~~~-~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------------LK--NEGA-TGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhc----------------cc--ccCc-cceEEEEEecchhHhhhhhcCCc
Confidence 444545566666665 4688888864332211 11 1111 45566667788889999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.|-++-+..+.+ .+......+ +.|...|++++|++||. +++|..-|+|-+-.+++
T Consensus 99 ~V~v~ql~~~~p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 99 RVSVFQLNKELP---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEeehhhccCC---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 998887776421 111111222 34889999999999997 89999999998887765
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.19 Score=59.63 Aligned_cols=95 Identities=12% Similarity=0.242 Sum_probs=70.5
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-------CCEEEEEeeCCeEEEEeCC--Ccccc-ccccc
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-------GSQIWVGYMNGIVQVLDLE--GNLLG-GWVAH 497 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-------G~~LasGs~DgtIrlWD~~--g~~i~-~l~gH 497 (838)
+|. ++|||.||+|.+-.+ +++...++.- ..++.+|+.+ .+++++|+.-| +.|..-. |+... .+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 454 999999999999988 6655444433 3477777653 35899999888 8888755 43322 35555
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++|.++.+.|++++|++.+| ||++|+..
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence 689999999999999998776 89999654
No 332
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.92 E-value=0.26 Score=58.09 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=39.4
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee
Q 003217 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (838)
++|.|...|+|-+.|+.++ ..-..|..|+..|.++-+.....|+|.+
T Consensus 439 LvAvGT~sGTV~vvdvst~--------~v~~~fsvht~~VkgleW~g~sslvSfs 485 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTN--------AVAASFSVHTSLVKGLEWLGNSSLVSFS 485 (1062)
T ss_pred eEEeecCCceEEEEEecch--------hhhhhhcccccceeeeeeccceeEEEee
Confidence 6899999999999999987 3445678899999999998877776654
No 333
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.75 E-value=8.9 Score=48.58 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=48.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCW----KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvW----d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
...|.++.+-++...|..+..+|-|.+. +..+. ..+....+ ...|.+++||||++ |+-...+++|-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~------~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED------EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLL 145 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc------eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEE
Confidence 4578999998999999999999999888 44442 11222222 56899999999998 45555566665
Q ss_pred EE
Q 003217 266 IW 267 (838)
Q Consensus 266 vW 267 (838)
+=
T Consensus 146 ~m 147 (928)
T PF04762_consen 146 LM 147 (928)
T ss_pred EE
Confidence 54
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.67 E-value=4.3 Score=44.12 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=40.3
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEe
Q 003217 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG 258 (838)
Q Consensus 197 la~s~dg~~LaSGs~-----DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg 258 (838)
-+||+||++|++-=. .|.|-|||...+ ++.+..|..|-=.=..|.+.|||+ |+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-------~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-------YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-------cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 478999999999644 478999999854 256677776643335678999995 6554
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.64 Score=55.31 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=70.0
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC------CCEEEeeCCCcEEEEECCC--
Q 003217 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GDLWSGSEGGGIKIWPWEA-- 271 (838)
Q Consensus 200 s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~L~SgS~DgtIrvWd~~~-- 271 (838)
+.+|.+++|+|.||+|.+-.+.++ ++..++. -..++.+|+++|| +++++|+.-| +-+....=
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 568999999999999999988876 3333322 1469999999998 3488998877 55554211
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
......++. -.+.+.++.- -|..|+=++|.+|+++|..+++.+..+..
T Consensus 150 nk~~v~l~~-----------------------------~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 150 NKDSVVLSE-----------------------------GEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred Cccceeeec-----------------------------CccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCC
Confidence 111110100 0122333322 24455556678999999999888765543
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.23 E-value=9.4 Score=45.30 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=70.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCcceee
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~~~~~ 276 (838)
++|..+++|+-|+.-|.+-+++-.++. ...+...|-.+.+..+.++++..+ +.|+..|.|.|..+....
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~-------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~--- 109 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE-------MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL--- 109 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh-------hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC---
Confidence 345567999999999999999988763 333444444566777788888875 578888888887764311
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccC
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~t 341 (838)
.+...... +.+. .+...|+++.-+.++-+|++|.+ ++|.+-.+.+
T Consensus 110 --p~~~~~~t-------------~~d~-----~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 --PRDLDYVT-------------PCDK-----SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --CCcceeec-------------cccc-----cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111000 0000 01335777777777788888775 3444444443
No 337
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.33 Score=54.08 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=56.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeC-CCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSE-GGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~-DgtIrvWd 268 (838)
...|+-+... -.+.+.+++.||.+|.|.-..- ...+-+..+.+|-+.|.+++.+-||.| .|.+. |..+|++|
T Consensus 9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-----sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-----SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cceeeeEeee-hhheEEeeecchhhhhcCCCCc-----cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 4455555554 4589999999999999975441 011344567899999999999999985 68777 99999999
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
++.
T Consensus 83 vEn 85 (558)
T KOG0882|consen 83 VEN 85 (558)
T ss_pred eec
Confidence 854
No 338
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.18 E-value=6.8 Score=43.02 Aligned_cols=57 Identities=14% Similarity=0.348 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCcEEEEECC-C-eEEEEcCCCCeeeEeecCCccEEEEEEcC---CEEEEEee
Q 003217 421 RTEALTTSIDGMIWTGGAN-G-LLLQWDPNGNRLQDFQYLPFAVQCLCTFG---SQIWVGYM 477 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~D-g-tIrlWD~~g~~l~tl~~H~~~V~sls~dG---~~LasGs~ 477 (838)
....++.+.+|.+|++... | .|.+|+.+|+.++.+......+.++++-| +.|++.+.
T Consensus 214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 3445677788999954444 3 79999999999999888767778887754 66666553
No 339
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.98 E-value=0.67 Score=49.35 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=62.2
Q ss_pred CCCceEEEEEcCCCcEEEEECCCeEEEEcCC--CCe--eeEeecCCc-----cEEEEEEcC---C-EEEEEeeCCeEEEE
Q 003217 418 DNRRTEALTTSIDGMIWTGGANGLLLQWDPN--GNR--LQDFQYLPF-----AVQCLCTFG---S-QIWVGYMNGIVQVL 484 (838)
Q Consensus 418 ~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~--g~~--l~tl~~H~~-----~V~sls~dG---~-~LasGs~DgtIrlW 484 (838)
|..-+.++.+..|...+..+.|=.|.+|+++ ..+ +-.++.|.- -|++-.+.. . +.++ ++.|+|+|-
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS-sSkG~Ikl~ 249 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS-SSKGEIKLN 249 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe-cCCCcEEeh
Confidence 5556778888888775444557779999983 222 333444432 244433322 2 4444 678999999
Q ss_pred eCCCc--cc---cccc---------ccccCEEEE---Ee--CCCEEEEEcCCCCeeeeecCC
Q 003217 485 DLEGN--LL---GGWV---------AHSSPVIKM---AV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 485 D~~g~--~i---~~l~---------gH~~~V~sl---a~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
|+... |. ..+. .-++.|.+| .+ .|++++|-+. -||++||+..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 97621 11 1111 122334444 33 5678887655 4899999764
No 340
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=93.70 E-value=0.15 Score=57.68 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=48.6
Q ss_pred EEEEEecCCcCccC--ceeeceeecccCcccCCCceeEEEEEEcCe---EEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 646 IAVWVRKNLKDYVG--DVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 646 l~vf~r~~~~~~i~--~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
++++-+.+.-..+- .|...-...++.+.-.=++.|.++|++-+. .++..|.||--|......|-++...|+..+
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAEL 282 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHH
Confidence 44555555322222 223233334444322226677788877765 899999999999888888899999998876
No 341
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=93.62 E-value=0.97 Score=48.26 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
..+..+++++. .+.|.+.||.+..+ ..|.+..+.|...+
T Consensus 140 ~~Rpilgi~i~----~~~ffstH~~a~~~--~da~aiV~~I~~~f 178 (271)
T PRK15251 140 ASRPIIGIRIG----NDVFFSIHALANGG--TDAGAIVRAVHNFF 178 (271)
T ss_pred cccceEEEEec----CeEEEEeeecCCCC--ccHHHHHHHHHHHH
Confidence 36778888763 37999999999732 23666776766653
No 342
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.31 E-value=5 Score=45.74 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCcccccccccccCEEEEEe--CCCE--EEEEcCCCCeeeeecCC
Q 003217 478 NGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 478 DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~~--l~S~S~DgtIrlWdl~s 527 (838)
...++|.+++++-+.....-.++|....+ +++. +++|-.+.++.+.|++.
T Consensus 254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 35788999886656665566889999886 4554 55667888888888653
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.26 E-value=15 Score=42.42 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=37.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvW 267 (838)
....+..+|+|+.++. ..||...++..... +... .+.-.+.+|.+.++.+.-...++|++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------RNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIY 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTT--------EEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCC--------cccc-----cCceeEEEEecCccEEEEECCCeEEEE
Confidence 4678999999999988 66677777764332 2222 234456778888888777778889996
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.28 Score=53.93 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=67.2
Q ss_pred cCCCceEEEEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--C
Q 003217 417 DDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G 488 (838)
Q Consensus 417 ~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g 488 (838)
.+..-|..++|||.. .+..++.+++|+|.|+ +..+..++..| ..++++++| -.+|+.|...|.|.++|+. .
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 345567778898864 4788999999999999 55677888887 788988875 3499999999999999986 2
Q ss_pred cccccccc--cccCEEEEE
Q 003217 489 NLLGGWVA--HSSPVIKMA 505 (838)
Q Consensus 489 ~~i~~l~g--H~~~V~sla 505 (838)
..+..+.+ -..+|..|+
T Consensus 270 ~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIA 288 (463)
T ss_pred chHhhhhhhhccCcceeec
Confidence 34555544 345677665
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=0.068 Score=63.43 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCC-cEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG-GIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~Dg-tIrvW 267 (838)
+..-+|++|+.+.+.|+.|+..|.|+++++.+| ....+..+|..+|+-|--+.||. |-|.++.. ..-+|
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 567899999999999999999999999999998 44556789999999999999997 44444444 67789
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
++..
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 9854
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.95 E-value=0.37 Score=55.65 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
...|.+.+.+|+.. ++.|+.||+|.+||.+.+..+ +..+.-..+.++. +|..+++|+..|.|++||..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34566777888765 888999999999998433222 2222223344554 77889999888999999976
No 347
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.31 E-value=0.47 Score=48.81 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred ecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc-CCCCEEEEEeCCCcEEE
Q 003217 140 CTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHRDGRIMC 217 (838)
Q Consensus 140 ~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s-~dg~~LaSGs~DGtIrv 217 (838)
.....++. ++|+.|.+|+.... -. . .+..++ +..+|.|+.-. .++.+.++|..||.||.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~-g~-~------------~d~~~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLE-GA-H------------SDRVCS-----GEESIDLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred ccCceEEeecccceEEEecCCcc-ch-H------------HHhhhc-----ccccceeccccccccceeEEeccCCceee
Confidence 34556666 46899999887421 00 0 111121 13455555443 34568999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEe--eCCCcEEEEECCC
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSG--SEGGGIKIWPWEA 271 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~Sg--S~DgtIrvWd~~~ 271 (838)
|++.-. +....--.|+ .++.....+..++ |.++ |.|.++|.|+++.
T Consensus 129 ~n~~p~--------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 129 CNIKPN--------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eccccC--------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 998765 3333333465 5666666655555 6666 8899999999854
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.08 E-value=18 Score=38.18 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=65.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
..+++.||.-+.++.-|..+|. . .|+.- ...|-+-+.- -|+ ++-|...|.+-+-+..++++...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~--------~--~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGN--------L--IWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCc--------E--EeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 3678888888888888888772 1 22211 1222222222 244 67888888888888877655444322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEE-EcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL-SDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la-s~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
.+ .+++-+ .+.+++.+|+++ |++....|.++..++-..+-
T Consensus 92 ~~------------------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 92 LE------------------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hh------------------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 11 111111 345778899988 57888999988887655443
No 349
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=3.4 Score=49.82 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (838)
..|+.+++++.+-+.||.|-.||+|....-+-- . ++..+...... -+.+||+++|-.||+. +-...-..|.++.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-R--Drgsr~~~~~~-~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-R--DRGSRQDYSHR-GKEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcch-h--ccccceeeecc-CCCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 668999999999999999999999987753210 0 00011111111 2579999999999972 33334456888887
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+....+.. +.++ -....|..+++....+.+++...+.+||.......-+|.
T Consensus 201 ~gr~p~~~~------------------ld~~----------G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 201 SGRTPSLKV------------------LDNN----------GISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceee------------------eccC----------CccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 642211110 1111 113445555555555666666778888877655545554
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.86 E-value=16 Score=40.03 Aligned_cols=95 Identities=21% Similarity=0.339 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCCc-EEEEEC-CCeEEEEcCC---CC---e--eeEeecCCccEEEEEEcCC-EEEEEee-CC-eEEEEe
Q 003217 419 NRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---GN---R--LQDFQYLPFAVQCLCTFGS-QIWVGYM-NG-IVQVLD 485 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~~---g~---~--l~tl~~H~~~V~sls~dG~-~LasGs~-Dg-tIrlWD 485 (838)
....+.|+||||++ ++.+-+ .+.|..++.. +. . ...+..+.+.--.++.|.+ .||++.. +| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 44456799999996 655543 3566666543 21 1 1111112222223444433 5664444 33 999999
Q ss_pred CCCcccccccccccCEEEEEeCC---CEEEE
Q 003217 486 LEGNLLGGWVAHSSPVIKMAVGA---GYIFT 513 (838)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sla~dg---~~l~S 513 (838)
..|+++.....+...+.++++.| +.|+-
T Consensus 242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred CCCcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 99999998888878888888754 55543
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.60 E-value=1.1 Score=41.28 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.-|+.||.|..||+|+-+. .+..+. -+..|++|+-...++++-|-..|||.|++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e----------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE----------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCCc----------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 5789999999999998654 233322 256889998888888999999999999875
No 352
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.56 E-value=38 Score=42.87 Aligned_cols=66 Identities=8% Similarity=-0.077 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrv 266 (838)
...|.++.|-.+..-|..+..+|.|.+-|.++.. ....|- .+.|.++++|||++ ++-.+.++++-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE----------LEIVGNVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc----------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 4468888888888889999999999988887742 222232 57899999999998 444444555543
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=0.44 Score=58.36 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=51.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEe---cCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS---SYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs---~dG~-L~SgS~DgtIrv 266 (838)
.++|.|++|+.+|+++..|..+|.|.+||+..+ +....+.-|..+++++-+. .++. ++++...|. +
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--------k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--------KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCC--------cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--e
Confidence 679999999999999999999999999999986 4455555555555555443 3333 677766665 7
Q ss_pred EEC
Q 003217 267 WPW 269 (838)
Q Consensus 267 Wd~ 269 (838)
|.+
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 875
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.20 E-value=36 Score=39.92 Aligned_cols=69 Identities=7% Similarity=0.078 Sum_probs=44.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc------cE--EEEEEecCCCEEEeeCCCcEEEEECCCcce
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG------PV--LSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~------~V--~slafs~dG~L~SgS~DgtIrvWd~~~~~~ 274 (838)
++.|+.++.|+.+...|..+| +.+-+..-... .+ ..+++..+++++.++.|+.|.-.|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--------~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--------KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--------hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE
Confidence 467788888999999999887 33322211111 11 112222226688888999999999998877
Q ss_pred eeecC
Q 003217 275 ALSLK 279 (838)
Q Consensus 275 ~~~~~ 279 (838)
.....
T Consensus 133 ~W~~~ 137 (488)
T cd00216 133 VWKFG 137 (488)
T ss_pred eeeec
Confidence 66553
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.96 E-value=5.4 Score=48.99 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcCCCCeeeE-eecCCccEEEEE--EcCCEEEEEeeCCeEEEEeC
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~t-l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (838)
.-.+++.+.+|.|+.||.+|.|||+|-.|..-+| |.+-..+|..|. .||++|++.+ +..|-|.|+
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4567889999999999999999999986654444 445578999774 5899887754 668888885
No 356
>PTZ00297 pantothenate kinase; Provisional
Probab=90.37 E-value=3.1 Score=54.90 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=41.3
Q ss_pred EEEEEEEecCCcCccCceeeceeec-ccCcccCCCceeEEEEEEc----C-eEEEEEeccccCCcchHHHHHHHHHHHHH
Q 003217 644 LLIAVWVRKNLKDYVGDVDVAAVPC-GFGRAIGNKGAVGLRVRVY----D-RIMCFVNCHFAAHLEAVNRRNADFDHVYR 717 (838)
Q Consensus 644 ~~l~vf~r~~~~~~i~~v~~~~v~~-G~~~~~gnKG~v~i~~~i~----~-~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~ 717 (838)
=.++|..|-.+.. .+.-..+. +.+-...+||.+-+.+.+. + ..+.|+|.||.+.... ..|.++.+++.+
T Consensus 103 ~G~AILSR~PI~~----~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~ 177 (1452)
T PTZ00297 103 NGLIIASRFPIWQ----RGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRR 177 (1452)
T ss_pred CEEEEEECCChhh----ceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHH
Confidence 3456777776642 22222222 1222235899999999984 2 5899999999987543 224444555543
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=0.92 Score=52.72 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=59.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEE-EEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-SLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~-slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..|.-+.++|.-.+||.+..+|.+-+..++- +.+.++.-|...|+ +++|.|||+ |+.|=.||+|++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3577889999999999999999887777663 45555555666666 999999999 678999999999999
Q ss_pred CCcc
Q 003217 270 EAIE 273 (838)
Q Consensus 270 ~~~~ 273 (838)
+++.
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 7754
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.98 E-value=35 Score=37.77 Aligned_cols=106 Identities=11% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE----------eeCCCcEEEEECCCccee--eecC
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSEGGGIKIWPWEAIEKA--LSLK 279 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~DgtIrvWd~~~~~~~--~~~~ 279 (838)
+++.+.|.+++ +..-... .+-.-.+++||||+ +++ |-..-.|.+||..+.... +.+.
T Consensus 17 ~rv~viD~d~~--------k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSG--------KLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP 86 (342)
T ss_dssp EEEEEEETTTT--------EEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEECCCC--------cEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC
Confidence 36777777665 2222221 12233467899997 543 334567899999875432 2222
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCccEEEEEecCC
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~ 352 (838)
...+... + .....++.+.++..+.... -..|.|-|+..+++++.+...+
T Consensus 87 ~k~R~~~-~-----------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 87 PKPRAQV-V-----------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp TS-B--B-S-------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred Ccchhee-c-----------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC
Confidence 2111110 0 0111123334455443332 2478899999999888766544
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=0.66 Score=56.87 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=59.9
Q ss_pred EEEEECCCeEEEEcCCCCeee--EeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe-
Q 003217 433 IWTGGANGLLLQWDPNGNRLQ--DFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~--tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~- 506 (838)
++.|++-|.|-..|.+|+.-. .=..-.++|+++++ +|+++..|-.+|.|.+||.. ++.++.+.-|..++.++..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 566776677777777665221 11112457888876 68888888888999999986 5777777777777666542
Q ss_pred ----CCCEEEEEcCCCCeeeeec
Q 003217 507 ----GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 507 ----dg~~l~S~S~DgtIrlWdl 525 (838)
++..++++.+-|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 3344666655554 6764
No 360
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=89.47 E-value=0.76 Score=50.11 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=68.2
Q ss_pred EeeeecccEEEEEEEecCCcCccCceee-----ceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc-----hH
Q 003217 636 VGSRQLAGLLIAVWVRKNLKDYVGDVDV-----AAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AV 705 (838)
Q Consensus 636 v~s~~l~g~~l~vf~r~~~~~~i~~v~~-----~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~-----~~ 705 (838)
..|--| |-.|+||.|..+..-..+.-. ..+-- |-.+|-||---.++.+.+..+.+.|.||-|--. =+
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~r--GDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHR--GDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeee--ccccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 344444 888999999887533222211 11111 234678998888999999999999999977522 24
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCCh
Q 003217 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY 780 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~ 780 (838)
--|..+-.++.+-++-- -...|.|+..||||-+=..+++
T Consensus 150 ~HR~~QAwdlaqfi~~t------------------------------------~q~~~vVI~~GDLN~~P~dl~~ 188 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRAT------------------------------------RQNADVVILAGDLNMQPQDLGH 188 (422)
T ss_pred hHHHHHHHHHHHHHHHH------------------------------------hcCCcEEEEecCCCCCccccce
Confidence 44665555554433110 1247999999999998766554
No 361
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=89.33 E-value=3.7 Score=43.22 Aligned_cols=78 Identities=13% Similarity=-0.054 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEee-CCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGS-EGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS-~DgtIrvWd~ 269 (838)
.=.|..|+......|+++.||++-+||+..-. -.......+-..|.++|..+.|++.|. |+-=| .=+.+.|-|+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~---tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA---TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccc---cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 45788999999999999999999999986531 011111122235899999999999885 33222 2356777887
Q ss_pred CCcc
Q 003217 270 EAIE 273 (838)
Q Consensus 270 ~~~~ 273 (838)
.+..
T Consensus 282 R~~~ 285 (344)
T KOG4532|consen 282 RNYV 285 (344)
T ss_pred ccCc
Confidence 6643
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.16 E-value=2.5 Score=50.61 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
+.+++|.|.--.|++|-.-|.+.+|...+. +..+. .-|..+|..+.||++|. |+|+..=|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc---------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 456999998889999999999999998773 44443 56999999999999998 8899999999999986
No 363
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.15 E-value=0.53 Score=56.32 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEE-EeeCC-eEEEEeCC-
Q 003217 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWV-GYMNG-IVQVLDLE- 487 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~Las-Gs~Dg-tIrlWD~~- 487 (838)
|.++...-++++|+.+.. |+.|+-.|.|+++++ +|.......+|..+|+-+-+ ||..+.+ .+... -..||++.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 445666677899998776 899999999999999 89888889999999999954 7885444 33343 67899986
Q ss_pred -CcccccccccccCEEEEEeCCC---EEEEEcCCCCeeeeecCCCCCCchhhh
Q 003217 488 -GNLLGGWVAHSSPVIKMAVGAG---YIFTLANHGGIRGWNVTSPGPLDSILC 536 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~dg~---~l~S~S~DgtIrlWdl~s~~~~d~~~~ 536 (838)
+...+++.+-. ++.+... .++..-. ..+-++|+++..+++.++.
T Consensus 1177 ~~~~~Hsf~ed~----~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1177 TGGPRHSFDEDK----AVKFSNSLQFRALGTEA-DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred ccCccccccccc----eeehhhhHHHHHhcccc-cceEEEecccCcHHHHhcC
Confidence 56666665432 2333221 2222222 3467899998887766443
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.13 E-value=47 Score=38.06 Aligned_cols=49 Identities=12% Similarity=0.336 Sum_probs=38.1
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
.|++++..+.. -....|.. +.|.++.|+.+-+|+.-..||+++++|+.+
T Consensus 62 ~I~iys~sG~l-------l~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGKL-------LSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCCE-------eEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 59999887741 12234555 789999999987898888999999999864
No 365
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=7.5 Score=43.75 Aligned_cols=163 Identities=11% Similarity=0.087 Sum_probs=93.4
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc--CCCCCcce-----eEEeccccccEEEEEEecCCC-EEEee
Q 003217 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL--DSDDGFGE-----VLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 188 ~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~--~~~~~~~~-----~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
+| .+||.|+.+.+.+..+.|....|.|.-|..+.... +..-.++. +..+.--++..+++.|+|+|. +.+-+
T Consensus 142 lH-~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 142 LH-FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cc-cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 56 89999999999999999999999999999874210 00000110 011112245678999999997 67777
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEE----EEeeceeecc-cceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcE
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAAL----IVERSYIDLR-SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSF 334 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~----~~~~s~~~l~-~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI 334 (838)
.|..||+....++.....+.. ....... ...-..+.+. -....-..-...+......+++.++..+.=++--+|
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE-~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gi 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDE-VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGI 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhc-cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeE
Confidence 999999999877542211110 0000000 0000000000 000000000000122334456666777766667789
Q ss_pred EEEeccCccEEEEEecCC
Q 003217 335 ALWDARTRELLKVFNIDG 352 (838)
Q Consensus 335 ~lWD~~tg~~l~~l~~~~ 352 (838)
++.++.|+.+.+.+..+.
T Consensus 300 kvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 300 KVINLDTNTVVRILGKDE 317 (558)
T ss_pred EEEEeecCeEEEEeccch
Confidence 999999999998886443
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.21 E-value=1.3 Score=34.24 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~ 222 (838)
.+.|.++.++|...+||.|+.||.|.++.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999843
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.82 E-value=2.6 Score=51.62 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=64.3
Q ss_pred cEEEEECCCeEEEEcC--CCCeeeEeec----CCccEEEEEEcCC-EEEEEeeCCeEEEEeCCCcc-cccccccccCEEE
Q 003217 432 MIWTGGANGLLLQWDP--NGNRLQDFQY----LPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIK 503 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~--~g~~l~tl~~----H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~-i~~l~gH~~~V~s 503 (838)
+...|-.++.+..||+ .|+.+-.-.. ......|++..+. +||+|+.+|.|||+|.-|+. -..+.|-.++|..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 4567777888999998 4643322122 2345668887765 99999999999999966643 4455676789998
Q ss_pred EE--eCCCEEEEEcCCCCeeeeec
Q 003217 504 MA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 504 la--~dg~~l~S~S~DgtIrlWdl 525 (838)
|. .||++++.. .+.-+-+.+.
T Consensus 624 iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEe-ecceEEEEEE
Confidence 86 599987733 3444556653
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=87.76 E-value=28 Score=41.91 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=36.4
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC--CCCeeeEeec--CCccEEEEEEcCCEEEEEeeCCeEEE
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQY--LPFAVQCLCTFGSQIWVGYMNGIVQV 483 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~--~g~~l~tl~~--H~~~V~sls~dG~~LasGs~DgtIrl 483 (838)
.++.+..++.|+.+..++...+|.+ .|.....+.. ....|.+|+.....|++++.++.+++
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 3466777777776665554455654 5654333333 24567777666566777777775554
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=86.57 E-value=48 Score=35.22 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 201 ~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
..++.|+.|+.+| +-+++..... ..... -+..+|..|...++-.++-.=.|+++.++++..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchh
Confidence 3678999999999 6777773221 12221 123459999999876633222359999999866
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=4 Score=47.69 Aligned_cols=84 Identities=24% Similarity=0.250 Sum_probs=58.9
Q ss_pred EEEEcCCC-cEEEEECCCeEEEEcCCCCeeeEeecCCccEE-EEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccc-ccc
Q 003217 424 ALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-CLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAH 497 (838)
Q Consensus 424 ala~S~dg-~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~-sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH 497 (838)
-+.++|.- .+|.+..+|.|-+...+-+++-++.-|...|+ +++. ||+.||+|-.||+|+|-|++ |..+... -.-
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~ 104 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSV 104 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccccc
Confidence 34455543 36788888888777777777777776777777 7765 89999999999999999997 5444442 223
Q ss_pred ccCEEEEEeC
Q 003217 498 SSPVIKMAVG 507 (838)
Q Consensus 498 ~~~V~sla~d 507 (838)
...|.++.++
T Consensus 105 e~~is~~~w~ 114 (665)
T KOG4640|consen 105 ETDISKGIWD 114 (665)
T ss_pred ccchheeecc
Confidence 3445555544
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.74 E-value=20 Score=39.24 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc----cccEEEEEEecCCCEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~L~SgS~DgtIrv 266 (838)
.+.+..+..++||++|+.++.-...+-|+.... .|+.| ...|.+|.|+||+.||....+|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 457888889999999999888777888986432 23333 46899999999999988889998877
Q ss_pred EE
Q 003217 267 WP 268 (838)
Q Consensus 267 Wd 268 (838)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.06 E-value=95 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.5
Q ss_pred EEEcCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 465 LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+...+..|++|+.||.|..+|.+ |+.+-++.
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 45678899999999999999986 77654444
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.00 E-value=4.4 Score=46.47 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=61.8
Q ss_pred EEEECCCeEEEEcC--CCC-eeeEeecCC----ccEEEEEEcCC-EEEEEeeCCeEEEEeCCCc-ccccccccccCEEEE
Q 003217 434 WTGGANGLLLQWDP--NGN-RLQDFQYLP----FAVQCLCTFGS-QIWVGYMNGIVQVLDLEGN-LLGGWVAHSSPVIKM 504 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~--~g~-~l~tl~~H~----~~V~sls~dG~-~LasGs~DgtIrlWD~~g~-~i~~l~gH~~~V~sl 504 (838)
+.|=.|+.|..||+ .|+ .+..-++|. +.-.|++..+. +|++||.+|-|||||..+. .-..+.|--.+|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 45666888999998 464 444444443 23457766554 9999999999999998654 345577778889887
Q ss_pred E--eCCCEEEEEcCCCCeeeee
Q 003217 505 A--VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 505 a--~dg~~l~S~S~DgtIrlWd 524 (838)
. .||++|+. ..+..+-+-+
T Consensus 478 dvtadGKwil~-Tc~tyLlLi~ 498 (644)
T KOG2395|consen 478 DVTADGKWILA-TCKTYLLLID 498 (644)
T ss_pred EeeccCcEEEE-ecccEEEEEE
Confidence 5 68988763 3345555544
No 374
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=79.65 E-value=11 Score=43.66 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=72.1
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEee-----------CCeEEEEeCC-
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM-----------NGIVQVLDLE- 487 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~-----------DgtIrlWD~~- 487 (838)
-+.+||-|+ |+|=...| |.+|-. +-..++.|. |.+ |. .+++..+||++=+. ...|.|||+.
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 467899988 67777777 999988 445666663 443 33 34566778887442 2589999986
Q ss_pred Ccccccccc--cccCEEEEE---eCCCEEEEEcCCCCeeeeecCCCCCCch
Q 003217 488 GNLLGGWVA--HSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 488 g~~i~~l~g--H~~~V~sla---~dg~~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
|.+.+++.. -...++-+. .|+++++-... .+|.+++..+..+++.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK 341 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc
Confidence 777787776 444566664 58888886655 5688888666555543
No 375
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.75 E-value=22 Score=42.53 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=26.5
Q ss_pred ccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcce
Q 003217 242 GPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK 274 (838)
Q Consensus 242 ~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~ 274 (838)
.....|.+||||+ + +++..+.+|-|.|+++.+.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 4557899999998 4 5788899999999977543
No 376
>PRK02888 nitrous-oxide reductase; Validated
Probab=76.23 E-value=74 Score=38.21 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCc-E-EEEECCCeEEEEcC-CCCe------------eeEeecCCccEEEEEEc--CCEEEEEeeCCeEE
Q 003217 420 RRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNR------------LQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 420 ~~v~ala~S~dg~-l-~Sgs~DgtIrlWD~-~g~~------------l~tl~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (838)
+....+.+||||+ + +++..+.+|-+.|+ +.+. ..+...-.++.. .++| |....+--.|..|-
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLH-TaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLH-TAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcce-EEECCCCCEEEeEeecceeE
Confidence 3455689999998 3 45556889999998 4321 222222233322 2344 44444455699999
Q ss_pred EEeCC
Q 003217 483 VLDLE 487 (838)
Q Consensus 483 lWD~~ 487 (838)
.||++
T Consensus 400 kwn~~ 404 (635)
T PRK02888 400 KWNIE 404 (635)
T ss_pred EEehH
Confidence 99965
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=75.26 E-value=1.5e+02 Score=33.53 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=33.7
Q ss_pred EEcCCC-CEEEEEeCCCcEEEE--ECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEeeCCCcEEEEECCCc
Q 003217 198 VGDEAS-GVVWSGHRDGRIMCW--KMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 198 a~s~dg-~~LaSGs~DGtIrvW--d~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~ 272 (838)
+|.+|| ++|+.+..||.-.+| |++++ ++.+|.-+. ....+...+++++ |+=-..+..|+.-|++++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~---------~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG---------EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT----------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC---------EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 345677 677778888865555 56664 445554332 1122455677776 544444567777788776
Q ss_pred ce
Q 003217 273 EK 274 (838)
Q Consensus 273 ~~ 274 (838)
+.
T Consensus 113 e~ 114 (386)
T PF14583_consen 113 EE 114 (386)
T ss_dssp -E
T ss_pred cE
Confidence 54
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=73.83 E-value=1.3e+02 Score=31.94 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=40.9
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 141 ~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
.++.|++|++.+|.++++...... +...+ ..+|.-+.+-++-+.|+.= .|+.+.++++
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~--------------------~~i~~-~~~I~ql~vl~~~~~llvL-sd~~l~~~~L 63 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKP--------------------TRILK-LSSITQLSVLPELNLLLVL-SDGQLYVYDL 63 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccc--------------------eeEee-cceEEEEEEecccCEEEEE-cCCccEEEEc
Confidence 467899999999999998321111 11122 3458888888776665554 3599999998
Q ss_pred CCC
Q 003217 221 NAR 223 (838)
Q Consensus 221 ~~g 223 (838)
..-
T Consensus 64 ~~l 66 (275)
T PF00780_consen 64 DSL 66 (275)
T ss_pred hhh
Confidence 763
No 379
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.06 E-value=41 Score=35.62 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=64.7
Q ss_pred EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE-EcCCEEEEEeeCCeEEEEeCC-Cccccccccccc-CEEE-EEeC
Q 003217 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS-PVIK-MAVG 507 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls-~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~-~V~s-la~d 507 (838)
++.||-.+.++--|. +|+.+=+-.. ..+|-+-+ .-|++++.|...|.+++.+.+ |.++..+..-.. .+.. ++++
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~ 104 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFD 104 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCC
Confidence 567777777777777 6765422111 23344332 368899999999999999987 655444433211 1222 3578
Q ss_pred CCEEEEEcCCCCeeeeecCCCCCC
Q 003217 508 AGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 508 g~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
++.++-++.|++...-|..++...
T Consensus 105 ~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred CceEEEecCCCcEEEecccccceE
Confidence 999999999999998887776554
No 380
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=68.86 E-value=9.6 Score=46.49 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=48.3
Q ss_pred cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEee---------CCeEEEEeCC
Q 003217 432 MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---------NGIVQVLDLE 487 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~---------DgtIrlWD~~ 487 (838)
.+..|...|+|-+-|. +-+.++++..|++.|..+...|..|++++. |.-|+|||+.
T Consensus 189 ~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhh
Confidence 3677888999999999 568999999999999999999998888773 5678999965
No 381
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=67.49 E-value=6.2 Score=47.94 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred EECCCeEEEEcCCCCeeeEeecCCccEE-------------EEEEcCCEEEEEeeCCeEEEEeC--CC----cccccccc
Q 003217 436 GGANGLLLQWDPNGNRLQDFQYLPFAVQ-------------CLCTFGSQIWVGYMNGIVQVLDL--EG----NLLGGWVA 496 (838)
Q Consensus 436 gs~DgtIrlWD~~g~~l~tl~~H~~~V~-------------sls~dG~~LasGs~DgtIrlWD~--~g----~~i~~l~g 496 (838)
+-.+++|++-..+......|.+|+.++. .+++||+.++.+..||.++.|.. +| .|+..|+-
T Consensus 201 ~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred ccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 3345667766553322244556765544 56789999999999999999984 45 37889999
Q ss_pred ccc-CEEEEEeC---------CC--EEEEE-cCCCCeeeeecCC
Q 003217 497 HSS-PVIKMAVG---------AG--YIFTL-ANHGGIRGWNVTS 527 (838)
Q Consensus 497 H~~-~V~sla~d---------g~--~l~S~-S~DgtIrlWdl~s 527 (838)
|+. +-.|..++ |. .++++ ..+..+++|.-..
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 883 33332222 22 23444 4556789998433
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=66.74 E-value=14 Score=28.45 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.8
Q ss_pred cccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 241 RGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 241 ~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...|..++++|... |+.|+.||.|.|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 45799999999988 579999999999988
No 383
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.07 E-value=3.8e+02 Score=34.34 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=64.4
Q ss_pred EEEEcCCCcE-EEEEC----C--CeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEee---CCeEEEEeCCCccc
Q 003217 424 ALTTSIDGMI-WTGGA----N--GLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLEGNLL 491 (838)
Q Consensus 424 ala~S~dg~l-~Sgs~----D--gtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~g~~i 491 (838)
.+.+-.||.. ++.+- . ..||+|+-+|+...+-+.-.+--.++ .|.|..||+.-. ...|..|..+|-..
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh 293 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH 293 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe
Confidence 5667778873 33332 2 57999999987544433211111134 357999988764 45777888776433
Q ss_pred ----ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 492 ----GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 492 ----~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
-.+......|..|.+ |++.|+-.-.| .|.+|-..+|.
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYH 336 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYH 336 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCE
Confidence 333344567888886 56666643344 49999877653
No 384
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=65.12 E-value=1.1e+02 Score=33.38 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcC-CCC-eeeE-eecCCccEEEEEEcCCEEEEEeeCCeEEEE--eCCCccccccc
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGN-RLQD-FQYLPFAVQCLCTFGSQIWVGYMNGIVQVL--DLEGNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~-~l~t-l~~H~~~V~sls~dG~~LasGs~DgtIrlW--D~~g~~i~~l~ 495 (838)
.|.++..- +|+|+.+. ++.|.+|++ ..+ .+.. +......|.++...+.+|++|+.-..|.++ +.+++.+..+.
T Consensus 90 ~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 90 PVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp -EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE
T ss_pred cceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE
Confidence 35555432 56666665 467999999 444 3322 222334788888889999999988888876 55554222222
Q ss_pred c--cccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 496 A--HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 g--H~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
. ..-+|+++.+ +++.++.+..+|.+.++...
T Consensus 168 ~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 168 RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 2334666653 67789999999999998863
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=65.08 E-value=69 Score=36.73 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=41.6
Q ss_pred eEEEEcCCCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCCCcc
Q 003217 441 LLLQWDPNGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNL 490 (838)
Q Consensus 441 tIrlWD~~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~ 490 (838)
.|++++..|+.+.++.-..+.|.++.+. ...|++-..||+++++|+-|+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 5999999999998877655888899874 4577777899999999997766
No 386
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=65.07 E-value=10 Score=46.17 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=47.2
Q ss_pred cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEE-------------EEeCCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 468 FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK-------------MAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~s-------------la~dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
...++-.+-.+++|+|.........-+.+|+.++.. +.+||+.+++++.||.++.|.+...+..
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 445777777899999977654444556678776654 3468999999999999999997654433
No 387
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.64 E-value=60 Score=41.68 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCCcEEEEECCCeEEEEcC--C---C---C-eee----------------Eee-cCCccEEEEEEcCC--
Q 003217 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP--N---G---N-RLQ----------------DFQ-YLPFAVQCLCTFGS-- 470 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~Sgs~DgtIrlWD~--~---g---~-~l~----------------tl~-~H~~~V~sls~dG~-- 470 (838)
...|.++....+|++.-++.|| .+|.+ + | + |-+ .+. .|.++|..++.|..
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 4567788888999998888888 55643 1 1 1 211 111 46778999998864
Q ss_pred EEEEEeeCCeEEEEeCC
Q 003217 471 QIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 471 ~LasGs~DgtIrlWD~~ 487 (838)
.+++=+..|+|++||++
T Consensus 256 IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred eeeeeccCceEEEEEcc
Confidence 78888899999999976
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.74 E-value=19 Score=41.54 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.-.|.+-.. .+.|+.||.+|.||++|-... +....|.|-..+|..|..+.||+.+-|.-+.++-|-++
T Consensus 432 nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~--------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 432 NFSCFATTE-SGYIVVGSLKGDIRLYDRIGR--------RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccceeeecC-CceEEEeecCCcEEeehhhhh--------hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 445666653 468999999999999997432 23344667788999999999999655556777777765
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=61.75 E-value=34 Score=39.16 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=34.3
Q ss_pred CCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe
Q 003217 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~ 506 (838)
...|++|..+|.|+++...|.++..-.-|.++|..|..
T Consensus 79 w~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred cEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEe
Confidence 35899999999999999999998888889999999973
No 390
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.52 E-value=3.3e+02 Score=31.14 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=73.4
Q ss_pred ceeeecCCcEEEEeccCc-c-c----cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCC-----eeeEeecC--CccE
Q 003217 397 NAIMGAADAVRRVAAKGG-F-G----DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN-----RLQDFQYL--PFAV 462 (838)
Q Consensus 397 ~~~~g~~~~v~~v~~~g~-~-~----~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~-----~l~tl~~H--~~~V 462 (838)
.++.|....+++-+..|. + . .....+.++.+.++|.++.++.+|.+ +|.. .|+ .+...... ...+
T Consensus 252 ~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l 330 (398)
T PLN00033 252 YVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGI 330 (398)
T ss_pred EEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcce
Confidence 444555555555444332 2 1 22345678889999999888888865 4544 554 22322221 1347
Q ss_pred EEEEE-cCCEEEEEeeCCeEEEEeCCCccccccc---ccccCEEEEEe-CCCEEEEEcCCCCeeee
Q 003217 463 QCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWV---AHSSPVIKMAV-GAGYIFTLANHGGIRGW 523 (838)
Q Consensus 463 ~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~---gH~~~V~sla~-dg~~l~S~S~DgtIrlW 523 (838)
+++.+ +...+++++.+|.|......|+.-.... .-....+.|.+ +.+..+-.+.+|.|-.|
T Consensus 331 ~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 331 LDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 77765 4556777788898888876665422222 22345778875 55566666777776544
No 391
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=58.11 E-value=30 Score=39.86 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=57.4
Q ss_pred EEEEcCCCc-E-EEEECCCe--EEEEcCCCCeeeEeecCCcc---EEEEEEcCCEEEEEee-CCe--EEEEeCCCcc--c
Q 003217 424 ALTTSIDGM-I-WTGGANGL--LLQWDPNGNRLQDFQYLPFA---VQCLCTFGSQIWVGYM-NGI--VQVLDLEGNL--L 491 (838)
Q Consensus 424 ala~S~dg~-l-~Sgs~Dgt--IrlWD~~g~~l~tl~~H~~~---V~sls~dG~~LasGs~-Dgt--IrlWD~~g~~--i 491 (838)
+..|+|||+ | .+...||. |.+.|+.++.+..++. ... -.++++||++|+-.+. .|. |.+.|.+|.. .
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 356899997 4 45566775 4555665544444432 222 2356889997776653 454 4455677643 3
Q ss_pred ccccccccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 492 GGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 492 ~~l~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++.+-....-.+.+||++++-.+..+.- |++..
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~ 354 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQ--WDIDK 354 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCc--eeeEE
Confidence 34444334444456899988865543222 55543
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=56.30 E-value=2.5e+02 Score=32.34 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=16.2
Q ss_pred CceEEEEEcCCCc-EE-EEECCCeEEEEcCC
Q 003217 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDPN 448 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~-Sgs~DgtIrlWD~~ 448 (838)
.-+..+.+|.|.+ |+ ++=.+|.||.||++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 3456788888887 54 44478999999984
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.14 E-value=89 Score=36.24 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=50.6
Q ss_pred EEEEcCCCcEEEEECCCeEEEE-cCCCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE
Q 003217 424 ALTTSIDGMIWTGGANGLLLQW-DPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (838)
Q Consensus 424 ala~S~dg~l~Sgs~DgtIrlW-D~~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (838)
..+|.+.+..++-...++|++. +.+.+..+.++.. ..+..|.. |..|...+ ++.|.+||.+ ++.++..... .|
T Consensus 73 ~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~v 147 (443)
T PF04053_consen 73 SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG-GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AV 147 (443)
T ss_dssp EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE--SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-
T ss_pred EEEEecCccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc-CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CC
Confidence 4567677777777777889985 4444433344332 23455544 87777754 4489999987 6777777644 27
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 502 IKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
..|.+ ++++++-.+ +.++.+++.
T Consensus 148 k~V~Ws~~g~~val~t-~~~i~il~~ 172 (443)
T PF04053_consen 148 KYVIWSDDGELVALVT-KDSIYILKY 172 (443)
T ss_dssp EEEEE-TTSSEEEEE--S-SEEEEEE
T ss_pred cEEEEECCCCEEEEEe-CCeEEEEEe
Confidence 77776 456666554 446666663
No 394
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.44 E-value=1.3e+02 Score=34.44 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=77.8
Q ss_pred eeecCCCCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEE
Q 003217 119 LEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCM 197 (838)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~l 197 (838)
.++-|||.+--.+...---+-.+ +++|++-..+++-=|-..... .|.+ ..| .+.. .++|.++
T Consensus 10 helihhPslfcnipesngvFfDDaNkqlfavrSggatgvvvkgpn--------------dDVp-iSf-dm~d-~G~I~SI 72 (657)
T KOG2377|consen 10 HELIHHPSLFCNIPESNGVFFDDANKQLFAVRSGGATGVVVKGPN--------------DDVP-ISF-DMDD-KGEIKSI 72 (657)
T ss_pred EEEecCchhhccCCcccceeeccCcceEEEEecCCeeEEEEeCCC--------------CCCC-cee-eecC-CCceeEE
Confidence 57778886554432222122223 458888777777777653211 0111 112 2333 6799999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
.||+|.+.||.--.|.+|...+..... ...+...+-+.-+..|.+.+|+..-.++--+ +..+-++.+..
T Consensus 73 kFSlDnkilAVQR~~~~v~f~nf~~d~----~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~p 141 (657)
T KOG2377|consen 73 KFSLDNKILAVQRTSKTVDFCNFIPDN----SQLEYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLP 141 (657)
T ss_pred EeccCcceEEEEecCceEEEEecCCCc----hhhHHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEch
Confidence 999999999999999999999885531 1111122233445568888888775554333 23466666543
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=52.07 E-value=37 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q 003217 192 SSVMCMVGDEASG---VVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 192 ~~V~~la~s~dg~---~LaSGs~DGtIrvWd~~~g 223 (838)
++|.|+.|+|+.. +|+-.-.-|.|.++|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999998554 7777777789999998753
No 396
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=51.52 E-value=4.2e+02 Score=30.25 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc----------C---------------------CCC----CcceeEEe
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL----------D---------------------SDD----GFGEVLSW 237 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~----------~---------------------~~~----~~~~~~~l 237 (838)
.|.++.|.++..-|+.|...|.|.+|....... + ... .|.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478889999888999999999998887543210 0 000 12222334
Q ss_pred ccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 238 QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 238 ~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
+..+++|++++.|.=|-++.|.++|++-|-|+.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RG 116 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRG 116 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTT
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCC
Confidence 5568999999999888889999999999999954
No 397
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=49.95 E-value=96 Score=35.38 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCCceEEEEEcCCCcEEEEECCCeEEEEcCCCC-eeeE--eec------CCccEEEEEE-------cC---CEEEEEeeC
Q 003217 418 DNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN-RLQD--FQY------LPFAVQCLCT-------FG---SQIWVGYMN 478 (838)
Q Consensus 418 ~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~-~l~t--l~~------H~~~V~sls~-------dG---~~LasGs~D 478 (838)
....|.+++.|.=|.++.|..+|++.+-|+.|- .+.+ +.. ....|+++.+ |+ -++++|+..
T Consensus 85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 356789999999999999999999999999874 3332 212 2345666633 33 288899999
Q ss_pred CeEEEEeC
Q 003217 479 GIVQVLDL 486 (838)
Q Consensus 479 gtIrlWD~ 486 (838)
|.+.+|.+
T Consensus 165 G~v~~fkI 172 (395)
T PF08596_consen 165 GNVLTFKI 172 (395)
T ss_dssp SEEEEEEE
T ss_pred CCEEEEEE
Confidence 99988864
No 398
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.62 E-value=6.3 Score=43.86 Aligned_cols=17 Identities=53% Similarity=0.972 Sum_probs=15.2
Q ss_pred cCcccEEEEeccceeee
Q 003217 759 LSEADMVIFLGDFNYRL 775 (838)
Q Consensus 759 ~~~~d~vf~~GDlNyRi 775 (838)
|..+++|||=||||||=
T Consensus 349 L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HhhCcEEEEeccccHHH
Confidence 56889999999999994
No 399
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.94 E-value=88 Score=32.56 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=44.4
Q ss_pred eEEEEecCCEEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceee------ecCCCCeEEEEEcCCCCEEE
Q 003217 135 LRTIVCTEEQLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES------VKGVSSVMCMVGDEASGVVW 207 (838)
Q Consensus 135 ~~~l~~~~~~l~-~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~g~~~V~~la~s~dg~~La 207 (838)
+..+.+.+..|. +..+|.+++||+.+....-.. ...+|+-.. .. ...|..+.++.+|--|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-----------~Si~pll~~~~~~~~~~-~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP-----------VSIAPLLNSSPVSDKSS-SPNITSCSLTSNGVPIV 82 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC-----------ccHHHHhcccccccCCC-CCcEEEEEEcCCCCEEE
Confidence 445677777555 478999999999876543220 112222110 11 45677777877776666
Q ss_pred EEeCCCcEEEEECCC
Q 003217 208 SGHRDGRIMCWKMNA 222 (838)
Q Consensus 208 SGs~DGtIrvWd~~~ 222 (838)
+=+ +|..-.|+.+-
T Consensus 83 ~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 83 TLS-NGDSYSYSPDL 96 (219)
T ss_pred EEe-CCCEEEecccc
Confidence 543 46666776543
No 400
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=47.88 E-value=1.7e+02 Score=31.89 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=71.0
Q ss_pred ccccCceeEEEEecCCEEEEecCCCEEEEeCCCCc-cccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE
Q 003217 128 ETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (838)
Q Consensus 128 ~~~~~~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L 206 (838)
+......+.+|+.-++.|.++..+.|.+|++.... -... ...+....|.++... +.+|
T Consensus 84 ~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~-------------------~~~~~~~~i~sl~~~--~~~I 142 (321)
T PF03178_consen 84 STEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKK-------------------AFYDSPFYITSLSVF--KNYI 142 (321)
T ss_dssp EEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEE-------------------EEE-BSSSEEEEEEE--TTEE
T ss_pred EEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhh-------------------heecceEEEEEEecc--ccEE
Confidence 34455667788877888999999999999996543 1110 011112355666554 5688
Q ss_pred EEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 207 aSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
+.|.....+-++...... .....+ ......|+++.|-+|++ ++.+..+|.|.++...
T Consensus 143 ~vgD~~~sv~~~~~~~~~-------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 143 LVGDAMKSVSLLRYDEEN-------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEESSSSEEEEEEETTT-------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEcccCEEEEEEEccC-------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 899877777666443320 112111 12355699999986665 7889999999998874
No 401
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=47.77 E-value=40 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=19.5
Q ss_pred ccEEEEEEcCCEEEEEeeCCeEEEE
Q 003217 460 FAVQCLCTFGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 460 ~~V~sls~dG~~LasGs~DgtIrlW 484 (838)
..|.+++....+++++++-+.+|+|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 3567777777788888888888886
No 402
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=47.65 E-value=3.2e+02 Score=29.31 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=61.8
Q ss_pred EEEEEcCCCcEE-EEECCC--eEEEEcC-CCCeeeEeecCCc-cEEEEEEcCCEEEEE-eeCCeEEEEeCC-Cccccccc
Q 003217 423 EALTTSIDGMIW-TGGANG--LLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVG-YMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~l~-Sgs~Dg--tIrlWD~-~g~~l~tl~~H~~-~V~sls~dG~~LasG-s~DgtIrlWD~~-g~~i~~l~ 495 (838)
..+.+..+|.|+ |.+.-| .|+.+|+ +|+.++....... -=-.++.-+..|+-= -.++..-+||.+ -+.+.++.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 346676677765 444434 7999999 7887665543221 112345556655544 479999999987 35566664
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
- .+.=|.|+.|++.|+.......+..+|..
T Consensus 128 y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 128 Y-PGEGWGLTSDGKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp --SSS--EEEECSSCEEEE-SSSEEEEE-TT
T ss_pred c-CCcceEEEcCCCEEEEECCccceEEECCc
Confidence 3 35668888888877755445566666643
No 403
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=47.08 E-value=36 Score=22.09 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=16.8
Q ss_pred cccEEEEEEecCCCEEEeeCC
Q 003217 241 RGPVLSLCISSYGDLWSGSEG 261 (838)
Q Consensus 241 ~~~V~slafs~dG~L~SgS~D 261 (838)
...|.+|..+++|.||.|+.+
T Consensus 4 ~n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEETS
T ss_pred CCeEEEEEEcCCcCEEEEeCC
Confidence 468999999999999988753
No 404
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=46.24 E-value=4.4e+02 Score=29.76 Aligned_cols=69 Identities=7% Similarity=0.176 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EE-EeeCCCcEEE
Q 003217 193 SVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LW-SGSEGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~-SgS~DgtIrv 266 (838)
.-..++++++++.++.+.. +++|-+-|..+. ....+. .| ..+ ..++++|+|. ++ +-+.+++|-+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--------~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--------KVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--------eEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 3456899999998888877 567777777765 333332 23 234 8899999998 54 5568899999
Q ss_pred EECCC
Q 003217 267 WPWEA 271 (838)
Q Consensus 267 Wd~~~ 271 (838)
.|..+
T Consensus 187 i~~~~ 191 (381)
T COG3391 187 IDTSG 191 (381)
T ss_pred EeCCC
Confidence 99654
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=44.24 E-value=1.3e+02 Score=34.51 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE----ecC-----------C--
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI----SSY-----------G-- 253 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf----s~d-----------G-- 253 (838)
...+.+++.+|.+++.|....=|.|-++|+.++ ..++-|+|-+++=.+-.. ... .
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~--------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG--------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC--------hhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 345789999999999888777789999999987 456667776654222111 111 0
Q ss_pred -C-EE-EeeCCCcEEEEECCCccee
Q 003217 254 -D-LW-SGSEGGGIKIWPWEAIEKA 275 (838)
Q Consensus 254 -~-L~-SgS~DgtIrvWd~~~~~~~ 275 (838)
. |+ =+-.-|.|.||.+.++.+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEE
Confidence 1 32 4667889999999776543
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=43.23 E-value=3.6e+02 Score=29.46 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=65.7
Q ss_pred EEEEECCCeEEEEcCCC--Ce--eeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC--Cc--ccccccccccCEEEE
Q 003217 433 IWTGGANGLLLQWDPNG--NR--LQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE--GN--LLGGWVAHSSPVIKM 504 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g--~~--l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~--g~--~i~~l~gH~~~V~sl 504 (838)
...+-.+.-+++.|+.. +. +..+.. .+.-.++...|++.+++..|..+-+.|+. .+ +..........-+.+
T Consensus 99 vyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v 177 (370)
T COG5276 99 VYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDV 177 (370)
T ss_pred EEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeE
Confidence 33333444599999842 22 222221 24556788899999999988788889976 22 344444455555778
Q ss_pred EeCCCEEEEEcCCCCeeeeecCCCC
Q 003217 505 AVGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 505 a~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+..|++-+-+-.|+.+.+-|+.+|.
T Consensus 178 ~ISGn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 178 AISGNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred EEecCeEEEEEeCCCeEEEEccCCC
Confidence 8889998888899999999987753
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.19 E-value=1.5e+02 Score=31.23 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=53.8
Q ss_pred EEEEcCCCc--EEEEECCCeEEEEc--C-CCC-----eeeEeec-----CCc-cEEEEEEcCCEEEEEeeCCeEEEEeCC
Q 003217 424 ALTTSIDGM--IWTGGANGLLLQWD--P-NGN-----RLQDFQY-----LPF-AVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 424 ala~S~dg~--l~Sgs~DgtIrlWD--~-~g~-----~l~tl~~-----H~~-~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (838)
.++++.|.+ -++-+.+-+|.-|| . +|. .+-.++- |.. .=+++..+|...++.-..++|...|+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 345555544 24556677888888 3 442 2222221 100 011333345555555678899999986
Q ss_pred -CcccccccccccCEEEEEeCCC
Q 003217 488 -GNLLGGWVAHSSPVIKMAVGAG 509 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~dg~ 509 (838)
|+.+..++..+..|++.++.|.
T Consensus 242 tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecCC
Confidence 8999999999999999998776
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.95 E-value=1.4e+02 Score=31.03 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=47.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC-CcceeEEec-------cccccEEEEEEecCCC-EEEeeCCC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD-GFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGG 262 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~-~~~~~~~l~-------gH~~~V~slafs~dG~-L~SgS~Dg 262 (838)
+++..+.. .+.+|..-+.+|.+.+||+.++.+-... .+..+ +. .....|.++.++.+|. |++-|. |
T Consensus 13 s~~~~l~~--~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl--l~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g 87 (219)
T PF07569_consen 13 SPVSFLEC--NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL--LNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G 87 (219)
T ss_pred CceEEEEe--CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH--hcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C
Confidence 35555554 5788999999999999999986320000 00000 11 3567899999999998 565554 5
Q ss_pred cEEEEEC
Q 003217 263 GIKIWPW 269 (838)
Q Consensus 263 tIrvWd~ 269 (838)
..-.|+.
T Consensus 88 ~~y~y~~ 94 (219)
T PF07569_consen 88 DSYSYSP 94 (219)
T ss_pred CEEEecc
Confidence 6777876
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.23 E-value=1.1e+02 Score=32.25 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=36.8
Q ss_pred EEcCCCcEEEEE-CCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCC
Q 003217 426 TTSIDGMIWTGG-ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGS 470 (838)
Q Consensus 426 a~S~dg~l~Sgs-~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~ 470 (838)
+++.+|.|+.++ .-++|...|+ +|+.++++...+..|+|+++-|+
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 345577876655 4468999999 89999999999999999999876
No 410
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=41.81 E-value=1.3e+02 Score=33.40 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=44.1
Q ss_pred EEEcCCCCEEEEEe--------CCC--cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEee-CCCc
Q 003217 197 MVGDEASGVVWSGH--------RDG--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGS-EGGG 263 (838)
Q Consensus 197 la~s~dg~~LaSGs--------~DG--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS-~Dgt 263 (838)
+++++..++|+.-. +|+ .|=++|+.++ +.+..+.. ..++.+|..+.|.+ |++.+ .+++
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe
Confidence 56666666666543 333 3445567775 44554432 24688999999887 55544 5799
Q ss_pred EEEEECCCccee
Q 003217 264 IKIWPWEAIEKA 275 (838)
Q Consensus 264 IrvWd~~~~~~~ 275 (838)
+.++|..+++..
T Consensus 314 l~v~D~~tGk~~ 325 (342)
T PF06433_consen 314 LDVYDAATGKLV 325 (342)
T ss_dssp EEEEETTT--EE
T ss_pred EEEEeCcCCcEE
Confidence 999999887543
No 411
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.08 E-value=14 Score=43.54 Aligned_cols=96 Identities=15% Similarity=0.344 Sum_probs=59.6
Q ss_pred cCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 149 ~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
.|..+.+||+.+...... + ..-|.. .+. .+.++++..+-++|.+|..-..+++.|+....
T Consensus 127 nds~~~Iwdi~s~ltvPk------------e-~~~fs~~~l~---gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--- 187 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPK------------E-SPLFSSSTLD---GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--- 187 (783)
T ss_pred ccCCccceecccccCCCc------------c-cccccccccc---CccccccccCcchhhcccccchhhhhhhhhhh---
Confidence 377999999976533211 1 111222 222 34466677788999999999999999886421
Q ss_pred CCCcceeEEeccccccEEEEEEec-CCCEEEeeCCCcEEEEEC
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS~DgtIrvWd~ 269 (838)
.....+ .+..|..+..+| .+.-+..+.|+.|-+||.
T Consensus 188 ----~~~~sv--nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 188 ----DSVSSV--NTKYVQGITVDPFSPNYFCSNSDGDIAIWDT 224 (783)
T ss_pred ----hhhhhh--hhhhcccceecCCCCCceeccccCceeeccc
Confidence 111111 144667788888 444444445999999994
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=37.60 E-value=58 Score=38.77 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=24.0
Q ss_pred CeEEEEEcC----CCCEEEEEeCCCcEEEEECCCC
Q 003217 193 SVMCMVGDE----ASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 193 ~V~~la~s~----dg~~LaSGs~DGtIrvWd~~~g 223 (838)
.+.+++++. +..+|++-+.|+++|+||+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence 455555555 6789999999999999999997
No 413
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=37.34 E-value=60 Score=39.02 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=47.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
-+.++.-.|.|+-+++|++||.|++++.... .....+. -..|-..+.|...| |+++..|..+--|.-++
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r--------~qski~~-~~~p~~nlv~tnhg-l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR--------RQSKICE-EAKPKENLVFTNHG-LVTATSDRRALAWKEDG 84 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc--------chhhhhh-hcCCccceeeeccc-eEEEeccchhheeeccC
Confidence 4666777899999999999999999998764 1111111 12344556777655 67777788777887544
No 414
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=36.68 E-value=1.2e+02 Score=35.99 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.7
Q ss_pred CCEEEeeCCCcEEEEECCCcceeeec
Q 003217 253 GDLWSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 253 G~L~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
+.++.++.||.++.+|.++++...+.
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEE
Confidence 33568888999999999998776554
No 415
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.22 E-value=1.7e+02 Score=37.81 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=47.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CC----cc----CCC----CCcceeEEec-cccccEEEEEEecCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN----AR----LL----DSD----DGFGEVLSWQ-AHRGPVLSLCISSYG 253 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~----~g----~~----~~~----~~~~~~~~l~-gH~~~V~slafs~dG 253 (838)
...|.|++...+|+.. -|+.|| .+|.+. .+ .| -+. +...-...+. .|..+|..|+.+..-
T Consensus 178 g~~V~~I~~t~nGRIF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEE-EeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 3468899976666555 455556 355532 21 01 000 0000012333 678899999998755
Q ss_pred C-EEEeeCCCcEEEEECCC
Q 003217 254 D-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 254 ~-L~SgS~DgtIrvWd~~~ 271 (838)
. |++=++-++|++|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 5 68999999999999965
No 416
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=36.01 E-value=3.1e+02 Score=33.72 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=67.4
Q ss_pred ecCCCEEEEeCCCCcccccccccc--ccCCCCCCCCCC-ceeeecCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVS--VSKSKGEDGTAP-FKESVKGVSSVMCMVGD--EASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~--~~~~~~~~~~~p-~~~~~~g~~~V~~la~s--~dg~~LaSGs~DGtIrvWd~~~ 222 (838)
..||.|-+|-.++....-...+.. .+.++ ....| |...+ ..+++.|++. ...++||.++.-..|.||-...
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r--~~i~P~f~~~v--~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGFSR--LKIKPFFHLRV--GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhcccccccccc--ccCCCCeEeec--CCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 568899999875432110000000 00001 22334 43333 4589999998 7889999999999999988665
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecC-----CC--EEEeeCCCcEEEEEC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----GD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-----G~--L~SgS~DgtIrvWd~ 269 (838)
.. ..+..... ..|..-|-+|+|-++ |. |++++-.|.+-+|+.
T Consensus 197 ~~----~r~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VD----ERFYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc----cccccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 21 11111111 125667899999764 32 567888998888876
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=34.46 E-value=1e+03 Score=29.80 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=42.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccE----------------EEEEEecCCCEEEeeC-----
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV----------------LSLCISSYGDLWSGSE----- 260 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V----------------~slafs~dG~L~SgS~----- 260 (838)
.++.|+.++.|+.+...|..+| +.+..+. +.+.| ++--.--++.++.|+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TG--------k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~ 329 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTG--------KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNY 329 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCC--------CEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccc
Confidence 3468888999999888898887 3443331 11111 1111111455666643
Q ss_pred -----CCcEEEEECCCcceeeecC
Q 003217 261 -----GGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 261 -----DgtIrvWd~~~~~~~~~~~ 279 (838)
+|.|+-.|+++++......
T Consensus 330 ~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 330 STDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cccCCCcEEEEEECCCCcEeeEEe
Confidence 6889999999988776554
No 418
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=34.14 E-value=6.7e+02 Score=27.62 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=42.0
Q ss_pred EEECCCeEEEEcCCCCeeeEeec--CCccEEEE--EE------cCCEEEEEe-eCCeEEEEeCC-Cccccccccccc
Q 003217 435 TGGANGLLLQWDPNGNRLQDFQY--LPFAVQCL--CT------FGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSS 499 (838)
Q Consensus 435 Sgs~DgtIrlWD~~g~~l~tl~~--H~~~V~sl--s~------dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~ 499 (838)
.|..-|-|-++|..|+.++.+.. .-+.=+.| ++ .|. |.+|- -||+|..+|.. |+.+..+...++
T Consensus 217 ~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 217 AGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred cCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 45556789999999999998842 22222233 33 244 44544 59999999976 777666665444
No 419
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.95 E-value=3.1e+02 Score=35.29 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=46.6
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EE---eeCCCcEEEE
Q 003217 195 MCMVGDEASGVVWSGH---RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WS---GSEGGGIKIW 267 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs---~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~S---gS~DgtIrvW 267 (838)
.|++|-|.|.++++-. .|+.|+.+.-++-. .-.-...+..-...|..++|+.++.+ +. ......|++|
T Consensus 245 ~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-----hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 245 HSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-----HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred cceeecCCCCeEeeeeecCCCCcEEEEecCCcc-----ccccccCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence 4788989998888853 55689898876521 00111222333445999999999984 32 3444459999
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
-+.+
T Consensus 320 t~~N 323 (1265)
T KOG1920|consen 320 TTGN 323 (1265)
T ss_pred EecC
Confidence 8754
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=33.88 E-value=3.8e+02 Score=29.65 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcCCCCe---eeEe----ecCCccEEEEEEcC-----CEEEEEee
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNR---LQDF----QYLPFAVQCLCTFG-----SQIWVGYM 477 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~---l~tl----~~H~~~V~sls~dG-----~~LasGs~ 477 (838)
...++++.|||.++.+-..|.|++.+..|.. +..+ .........++++. .+|++.+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 3567899999999888889999999965543 2222 12334567777754 56666655
No 421
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=33.80 E-value=6.2e+02 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=18.8
Q ss_pred eeEEEEEEeCCCCCCcccccccccCC-----CCCceEEE
Q 003217 553 KILAGTWNVGQGRASQDALISWLGSA-----ASDVGIVV 586 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~~~l~~wl~~~-----~~~~di~v 586 (838)
++++.||+-+...-..-+...|+.-. ...++|+|
T Consensus 245 ~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV 283 (353)
T COG4257 245 RAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV 283 (353)
T ss_pred cEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee
Confidence 47888998875422112234577632 23356766
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=33.57 E-value=5.2e+02 Score=27.34 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCEEEEEe--CCC-cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC-CCcEEEEE
Q 003217 193 SVMCMVGDEASGVVWSGH--RDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWP 268 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs--~DG-tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~-DgtIrvWd 268 (838)
.+.+.+++++|+.+|.-. .++ .+.++...+. ....+.++ .++.-.|+++|.+|+... +...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeeccCC--ccccccccCCCCEEEEEcCCCceEEEE
Confidence 577889999998776655 332 4555544432 12222333 677788999999886644 55666664
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=33.47 E-value=1.6e+02 Score=32.70 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=40.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcE-EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRI-MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtI-rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrv 266 (838)
.+.+.++.+++++.+++.|.. |.+ +.++-. + ..+.... .+-...++++++.++++++..+..|.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g-----~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-Q-----TAWTPHQ--RNSSRRLQSMGFQPDGNLWMLARGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-C-----CeEEEee--CCCcccceeeeEcCCCCEEEEecCCEEEE
Confidence 346889999998776666554 544 333221 1 0111111 12245789999999999876677777653
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=32.84 E-value=6.5e+02 Score=27.05 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=45.5
Q ss_pred ccEEEEEEecCCCEE-EeeCCC--cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 242 GPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 242 ~~V~slafs~dG~L~-SgS~Dg--tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
.-...+.|..+|.|+ |.+.-| .||.+|+++++......... ...-.| ..+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------------~~FgEG---------it~- 97 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------------RYFGEG---------ITI- 97 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------------T--EEE---------EEE-
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------------ccccee---------EEE-
Confidence 345678888888875 555444 89999998865322211110 001111 111
Q ss_pred EcCCCCEEEEeCC--CcEEEEeccCccEEEEEec
Q 003217 319 SDHSRAKVWSAGF--LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 319 s~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~ 350 (838)
-+.+||--++ +...+||..|-+.+.+|..
T Consensus 98 ---~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y 128 (264)
T PF05096_consen 98 ---LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY 128 (264)
T ss_dssp ---ETTEEEEEESSSSEEEEEETTTTEEEEEEE-
T ss_pred ---ECCEEEEEEecCCeEEEEccccceEEEEEec
Confidence 1456777766 4677999998888777653
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.02 E-value=7.8e+02 Score=30.52 Aligned_cols=79 Identities=4% Similarity=-0.054 Sum_probs=50.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-C---ccCCCCCcceeEEe--------ccccccEEEEEEecCC----CEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNA-R---LLDSDDGFGEVLSW--------QAHRGPVLSLCISSYG----DLW 256 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~-g---~~~~~~~~~~~~~l--------~gH~~~V~slafs~dG----~L~ 256 (838)
.|.-+.++|+|++|+-.+..|.+.+-=... | .-+....-..+++. ..+...|..+.|.|.+ .|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 578899999999999998888554322111 0 00000110112221 2445689999999875 388
Q ss_pred EeeCCCcEEEEECCC
Q 003217 257 SGSEGGGIKIWPWEA 271 (838)
Q Consensus 257 SgS~DgtIrvWd~~~ 271 (838)
.=..|+++|++|+..
T Consensus 166 vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 166 VLTSDNTLRLYDISD 180 (717)
T ss_pred EEecCCEEEEEecCC
Confidence 888899999999954
No 426
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=31.71 E-value=7.2e+02 Score=28.43 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcCCCCeeeEee---cCCccEEEEEE-cCCEEEEEeeCCeEEEE
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~---~H~~~V~sls~-dG~~LasGs~DgtIrlW 484 (838)
.+.++.+.+++.+|.++.+|.+....-.|+--+... .-....+.+.+ +....++.+.+|.|--|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 477888999999999999997776655665433322 12335667775 44677777788877544
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=31.70 E-value=56 Score=38.89 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=23.7
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeec
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQY 457 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~ 457 (838)
.+..+++-+.|+++|+||+ +++|+.++..
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3455889999999999999 7888777644
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=30.69 E-value=2.2e+02 Score=31.99 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC
Q 003217 193 SVMCMVGDEASGVVWSGH-----------RDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs-----------~DG-tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~ 260 (838)
....|++|++|++.++-. ..+ .|.+++-..+. -.......+...-...++|++.++| |+.++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd----G~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD----GKYDKSNVFAEELSMVTGLAVAVGG-VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC----CCcceeEEeecCCCCccceeEecCC-EEEeCC
Confidence 345689999988666532 223 67666543321 1112233343333456889999999 776666
Q ss_pred CCcEEEEECC
Q 003217 261 GGGIKIWPWE 270 (838)
Q Consensus 261 DgtIrvWd~~ 270 (838)
+...++.+.+
T Consensus 90 ~~i~~~~d~~ 99 (367)
T TIGR02604 90 PDILFLRDKD 99 (367)
T ss_pred CeEEEEeCCC
Confidence 6555555553
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=30.54 E-value=1.2e+02 Score=23.02 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=21.6
Q ss_pred ccEEEEEEecC-C--CE-EEeeCCCcEEEEECCC
Q 003217 242 GPVLSLCISSY-G--DL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 242 ~~V~slafs~d-G--~L-~SgS~DgtIrvWd~~~ 271 (838)
++|.++.|||+ + .| +-+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57999999974 4 45 4444557899999863
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=29.26 E-value=7e+02 Score=30.37 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=56.3
Q ss_pred CCEEEEEeeCCeEEEEeCCC-cc--cccccccccCEEEEE----eCCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhc
Q 003217 469 GSQIWVGYMNGIVQVLDLEG-NL--LGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAG 541 (838)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g-~~--i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~ 541 (838)
++.-++-+....+.|||..+ .+ -.++ ...+.|..+. +|++.+++.|..+.|.++.-..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R-------------- 105 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR-------------- 105 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc--------------
Confidence 44334444466899999874 32 3444 4567788876 4899999999999999876221
Q ss_pred cccccccccceeeEEEEEEeCCCCCCcccccccccC
Q 003217 542 KEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS 577 (838)
Q Consensus 542 r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~ 577 (838)
..|+....-...+...++....|.+-.-.-|+..
T Consensus 106 --~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~ 139 (631)
T PF12234_consen 106 --YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD 139 (631)
T ss_pred --hhhhcCCcccceeEEEEeecCCCCCccceeEecC
Confidence 1122222223455566666666544322468884
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=27.51 E-value=2.2e+02 Score=34.15 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=52.3
Q ss_pred eEEEEcC-CCC--eeeEeecCCccEEEEEEcCCEEEEEeeCC-----eEEEEeCCCc---ccccccccccCEEEEEeCCC
Q 003217 441 LLLQWDP-NGN--RLQDFQYLPFAVQCLCTFGSQIWVGYMNG-----IVQVLDLEGN---LLGGWVAHSSPVIKMAVGAG 509 (838)
Q Consensus 441 tIrlWD~-~g~--~l~tl~~H~~~V~sls~dG~~LasGs~Dg-----tIrlWD~~g~---~i~~l~gH~~~V~sla~dg~ 509 (838)
++..+|. ++. .+..+..-.........++...+.|+.|+ +|..+|.+.+ .+..+......+.....++.
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ 524 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGK 524 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCE
Confidence 5788888 442 22223221112223345677777788765 4888998743 34445555555555567888
Q ss_pred EEEEEcCCCCeeeeecCCCCC
Q 003217 510 YIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 510 ~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.-+.|+.|+.-++=.+..++|
T Consensus 525 ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 525 LYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred EEEEecccCccccceeEEcCC
Confidence 888888887655433444433
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=26.91 E-value=8.7e+02 Score=26.63 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCcEEEEECCCe-EEEEcCC-CCeeeEeecCCccEEEEEEcC-CEEEEEeeCCeEEEEeCC--C----c
Q 003217 419 NRRTEALTTSIDGMIWTGGANGL-LLQWDPN-GNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE--G----N 489 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~Sgs~Dgt-IrlWD~~-g~~l~tl~~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~--g----~ 489 (838)
...+..+..++||+++..+..|. ..-||.- ..-...-..-+.+|.++.+.. ..||.....|.|+.=|.. + +
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence 35567778889999766666664 4678863 222222223467889887643 466667788888887721 1 1
Q ss_pred ccccccccccCEEEEEeC-CCEEEEEcCCCCe
Q 003217 490 LLGGWVAHSSPVIKMAVG-AGYIFTLANHGGI 520 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~d-g~~l~S~S~DgtI 520 (838)
.+.....-.-.+..+++. ++.++.++..|++
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence 122221222236777753 3455555555554
No 433
>PHA02713 hypothetical protein; Provisional
Probab=26.82 E-value=2.3e+02 Score=33.97 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=43.0
Q ss_pred eEEEEcCCCCe---eeEeecCCccEEEEEEcCCEEEEEeeC------CeEEEEeCCC-c---ccccccccccCEEEEEeC
Q 003217 441 LLLQWDPNGNR---LQDFQYLPFAVQCLCTFGSQIWVGYMN------GIVQVLDLEG-N---LLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 441 tIrlWD~~g~~---l~tl~~H~~~V~sls~dG~~LasGs~D------gtIrlWD~~g-~---~i~~l~gH~~~V~sla~d 507 (838)
++..+|+..+. +..+.........++.+|+.-+.|+.+ ..|..+|++. + .+..+.-+......+..+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 57778874322 222211111111234466655556543 3578899875 3 345555444444445578
Q ss_pred CCEEEEEcCCC
Q 003217 508 AGYIFTLANHG 518 (838)
Q Consensus 508 g~~l~S~S~Dg 518 (838)
++..+.||.|+
T Consensus 513 ~~iyv~Gg~~~ 523 (557)
T PHA02713 513 NTIMMLHCYES 523 (557)
T ss_pred CEEEEEeeecc
Confidence 88888999888
No 434
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=26.11 E-value=45 Score=39.51 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCeEEEEcC-CC--CeeeE--eec-CCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEE--e-C
Q 003217 439 NGLLLQWDP-NG--NRLQD--FQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--V-G 507 (838)
Q Consensus 439 DgtIrlWD~-~g--~~l~t--l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla--~-d 507 (838)
|-.++|||+ ++ ....+ |.+ -...+.++++ +-+.+.+|...+.|.++|+...+.+...-.+..|..+. + .
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred cCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCC
Confidence 447999998 44 11111 211 2223445555 56688899999999999987544332222233333333 3 6
Q ss_pred CCEEEEEcCCCCeeeee
Q 003217 508 AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 508 g~~l~S~S~DgtIrlWd 524 (838)
++|+++-. |+.|-+||
T Consensus 208 ~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWD 223 (783)
T ss_pred CCceeccc-cCceeecc
Confidence 78888766 99999999
No 435
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.95 E-value=3.7e+02 Score=31.96 Aligned_cols=62 Identities=16% Similarity=0.363 Sum_probs=40.4
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCC-ccEE----------EEEEcCCEEEEEeeCCeEEEEeCC-Cccc
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQ----------CLCTFGSQIWVGYMNGIVQVLDLE-GNLL 491 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~-~~V~----------sls~dG~~LasGs~DgtIrlWD~~-g~~i 491 (838)
+++|+.++.++.|.-.|. +|+.+=++.... ..+. .++..+.+|+.++.|+.|.-.|.+ |+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 567777777777888888 676554332210 0111 134456788888999999999986 7653
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=24.73 E-value=8.1e+02 Score=25.50 Aligned_cols=124 Identities=11% Similarity=0.141 Sum_probs=66.1
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE------eeCCCcEEEE-ECCCcc--
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS------GSEGGGIKIW-PWEAIE-- 273 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S------gS~DgtIrvW-d~~~~~-- 273 (838)
+.|+.+....+|.+|++.+.. .+...+|.- -+.|..|+++..|+ |+| ++....+|++ +|....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~------~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE------CPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC------CceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 566666777889999998532 133444432 37899999999998 664 2222377885 443321
Q ss_pred -eeeecCCCceeeeEEEEeeceeecccceeccceeeee-cCCeEEEEEcCCCCEEEEeCCCcEEEEeccC
Q 003217 274 -KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL-TSDIKNLLSDHSRAKVWSAGFLSFALWDART 341 (838)
Q Consensus 274 -~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-s~~v~~las~~~~~~V~s~s~~tI~lWD~~t 341 (838)
..... .++...+..+.... ....-.+.-+| +....+++.-+..+.|..|..+.+.||-+..
T Consensus 102 ~~~v~v-----RiaG~~v~~~~~~~--~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 102 NSPVRV-----RIAGHRVTPSFNES--SKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred CCcEEE-----EEcccccccCCCCc--cccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 00100 00000000000000 00001111122 3356788887777777778888899998754
No 437
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=24.28 E-value=2.9e+02 Score=33.23 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=55.0
Q ss_pred EEEEECC------CeEEEEcC-CCCeee--EeecCCccEEEEEEcCCEEEEEeeCC-----eEEEEeCCCcc---ccccc
Q 003217 433 IWTGGAN------GLLLQWDP-NGNRLQ--DFQYLPFAVQCLCTFGSQIWVGYMNG-----IVQVLDLEGNL---LGGWV 495 (838)
Q Consensus 433 l~Sgs~D------gtIrlWD~-~g~~l~--tl~~H~~~V~sls~dG~~LasGs~Dg-----tIrlWD~~g~~---i~~l~ 495 (838)
.++|+.| .++..+|. +++-.+ .+.......-....+|..-++|+.|| +|..||..++. ...+.
T Consensus 336 Yv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 336 YVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred EEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 3567766 36788888 343221 22222222222345778888888875 68899987543 33332
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCe-eeeecCCCCCC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVTSPGPL 531 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtI-rlWdl~s~~~~ 531 (838)
-....+-....+|..-+.||.|+.- .+=.+..++|.
T Consensus 416 ~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 416 TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 2222233334678877888888776 33334445554
No 438
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=23.83 E-value=2.6e+02 Score=19.84 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=17.6
Q ss_pred cccEEEEEEecCCC-EE-EeeCC--CcEEEE
Q 003217 241 RGPVLSLCISSYGD-LW-SGSEG--GGIKIW 267 (838)
Q Consensus 241 ~~~V~slafs~dG~-L~-SgS~D--gtIrvW 267 (838)
.+.-...+|||||+ |+ +...+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567789999998 54 66566 665555
No 439
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=23.81 E-value=1.2e+02 Score=31.85 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=53.5
Q ss_pred HHHHHhhhcC--CCCCEEEEeeeec--ccEEEEEEEecCCcCc-cCceeeceeecccCcccCCCceeEEEEEEcCeEEEE
Q 003217 619 WLDMIGKILD--DGSTFERVGSRQL--AGLLIAVWVRKNLKDY-VGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCF 693 (838)
Q Consensus 619 w~~~~~~~l~--~~~~y~~v~s~~l--~g~~l~vf~r~~~~~~-i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~F 693 (838)
-+++|.++.+ .+.+|+.+.+.-. +|+.|+|.+-.+=+.+ +++|+.+..++| |.+|.-|.|..-| ...-++.
T Consensus 66 IerAI~ka~G~~d~~~~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR~~F~K~G--G~lg~~GSV~~mF--~~kGvi~ 141 (241)
T COG0217 66 IERAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNG--GNLGEPGSVSYMF--DRKGVIV 141 (241)
T ss_pred HHHHHHhccCCCCccceEEEEEEeECCCceEEEEEeccCCcchhHHHHHHHHHhcC--CccCCCceEEEEE--eccEEEE
Confidence 4556666553 2358999988876 6999999999886554 788888877766 6788888887554 4555666
Q ss_pred Eecc
Q 003217 694 VNCH 697 (838)
Q Consensus 694 v~~H 697 (838)
+.-.
T Consensus 142 ~~~~ 145 (241)
T COG0217 142 VEKN 145 (241)
T ss_pred ECCC
Confidence 6554
No 440
>PRK13616 lipoprotein LpqB; Provisional
Probab=23.41 E-value=1.4e+03 Score=27.70 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEE---EcC-CCC-ee---eEeec-CCccEEEEEE-cCCEEEEEeeCCeEEEEeC--C
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQ---WDP-NGN-RL---QDFQY-LPFAVQCLCT-FGSQIWVGYMNGIVQVLDL--E 487 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrl---WD~-~g~-~l---~tl~~-H~~~V~sls~-dG~~LasGs~DgtIrlWD~--~ 487 (838)
.|..+.+||||. ++.-. ++.|.+ =.. .|+ .+ +.+.. -...+.++.. .+..|+++..++.-.+|-+ .
T Consensus 449 ~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 366777888886 43332 455544 222 343 11 11221 2223456654 3445667777666666764 4
Q ss_pred Ccccccccc--cccCEEEEEeCCCEEEEEcCCC
Q 003217 488 GNLLGGWVA--HSSPVIKMAVGAGYIFTLANHG 518 (838)
Q Consensus 488 g~~i~~l~g--H~~~V~sla~dg~~l~S~S~Dg 518 (838)
|.....+.+ ....|.+|+..++.++-...++
T Consensus 528 G~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 528 GSNSDALPSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred CccccccCCCCccCceEEEecCCceEEEEcCCc
Confidence 544333333 3667888876655555444444
No 441
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=5.1e+02 Score=28.22 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=36.8
Q ss_pred EcCCCcEEEEECC------CeEEEEcC-CC-CeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEE
Q 003217 427 TSIDGMIWTGGAN------GLLLQWDP-NG-NRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 427 ~S~dg~l~Sgs~D------gtIrlWD~-~g-~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlW 484 (838)
||+||.++-++++ |.|-+||. .+ +.+.++..|.-.-. .+..||+.|+.+ .|.|+.-
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth 186 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH 186 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence 7888887655543 57899999 44 66777776653333 446689988774 4445544
No 442
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=22.67 E-value=7.3e+02 Score=27.97 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred EEEecCCEEEE-----ecCC-CEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 137 TIVCTEEQLWA-----GGEN-GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 137 ~l~~~~~~l~~-----g~d~-~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+..+++.+.. |+|. .|++.|++++.... ..+. ...-..+.|.++++.++-..
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--------------------d~i~-~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--------------------DGIE-NPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--------------------EEEE-EEESEEEEECTTSSEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--------------------Cccc-ccccceEEEeCCCCEEEEEE
Q ss_pred CCCc-----------EEEEECCCCccCCCCCcce-eEEecccccc--EEEEEEecCCC--EEEeeCCCc-EEEE
Q 003217 211 RDGR-----------IMCWKMNARLLDSDDGFGE-VLSWQAHRGP--VLSLCISSYGD--LWSGSEGGG-IKIW 267 (838)
Q Consensus 211 ~DGt-----------IrvWd~~~g~~~~~~~~~~-~~~l~gH~~~--V~slafs~dG~--L~SgS~Dgt-IrvW 267 (838)
.|.. |..|.+.+.. .. ...+++.... ...+..++||+ +++.+...+ -.+|
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~-------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQ-------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-G-------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred eCcccccccCCCCcEEEEEECCCCh-------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
No 443
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=22.65 E-value=2e+02 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=17.1
Q ss_pred EEEcCCEEEEEeeCCeEEEEeCC
Q 003217 465 LCTFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~ 487 (838)
.+..+.+|+.++.||.|..+|.+
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT
T ss_pred CEEECCEEEEEcCCCEEEEEeCC
Confidence 45677788888889999888865
No 444
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=22.26 E-value=29 Score=27.22 Aligned_cols=6 Identities=67% Similarity=1.403 Sum_probs=4.7
Q ss_pred CCCCcc
Q 003217 822 PPTYKF 827 (838)
Q Consensus 822 ~PTYK~ 827 (838)
-|||||
T Consensus 45 NPTYky 50 (52)
T PF10515_consen 45 NPTYKY 50 (52)
T ss_dssp SCTCHH
T ss_pred CCceec
Confidence 488887
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=21.19 E-value=8.3e+02 Score=26.41 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred eEEEEEcCCCcEEEEEC---C----------CeEEEEcC-CCCeeeEeecC------CccEEEEEEcC-------CEEEE
Q 003217 422 TEALTTSIDGMIWTGGA---N----------GLLLQWDP-NGNRLQDFQYL------PFAVQCLCTFG-------SQIWV 474 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~---D----------gtIrlWD~-~g~~l~tl~~H------~~~V~sls~dG-------~~Las 474 (838)
|..+.+.++++||.--. + -.|.+||+ +++.++++.-. .+.++.+..|. .+++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 45566777788774321 1 16888999 67888887632 44667777654 36666
Q ss_pred Eee-CCeEEEEeCC-Ccccccc
Q 003217 475 GYM-NGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 475 Gs~-DgtIrlWD~~-g~~i~~l 494 (838)
+.. .+.|-|+|+. ++..+.+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEE
T ss_pred eCCCcCcEEEEEccCCcEEEEe
Confidence 664 4688899987 5544433
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.88 E-value=3.2e+02 Score=19.38 Aligned_cols=23 Identities=0% Similarity=0.030 Sum_probs=17.0
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCC
Q 003217 201 EASGVVWSGH-RDGRIMCWKMNAR 223 (838)
Q Consensus 201 ~dg~~LaSGs-~DGtIrvWd~~~g 223 (838)
|+++.|+.+. .+++|-++|..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 4677676655 5778999998775
No 447
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=20.81 E-value=5.9e+02 Score=22.50 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD 254 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~ 254 (838)
+|.+-.||..++ +...+..-=..=+.|++++|++
T Consensus 36 ~GRll~ydp~t~---------~~~vl~~~L~fpNGVals~d~~ 69 (89)
T PF03088_consen 36 TGRLLRYDPSTK---------ETTVLLDGLYFPNGVALSPDES 69 (89)
T ss_dssp -EEEEEEETTTT---------EEEEEEEEESSEEEEEE-TTSS
T ss_pred CcCEEEEECCCC---------eEEEehhCCCccCeEEEcCCCC
Confidence 456777888775 2322221122457899999998
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.14 E-value=1.8e+02 Score=19.62 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=13.1
Q ss_pred CCcEEEEECCCeEEEEcC-CCCe
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~ 451 (838)
+|.++.++.++.+...|. +|+.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcE
Confidence 445666666666666666 4544
No 449
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.01 E-value=2.7e+02 Score=30.29 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=44.5
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEE
Q 003217 198 VGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (838)
Q Consensus 198 a~s~dg~~LaSGs~D-----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvW 267 (838)
.|||||.+|+.--.| |.|-|+|...+ +..+-.|.+|.=.-..|.+.+||+++.... |.|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-------fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-------cceecccccCCcCcceeEEecCCcEEEEeC-Cceecc
Confidence 578999999876544 57889998765 366777888865667888999999544332 445544
Done!