Query 003217
Match_columns 838
No_of_seqs 448 out of 2554
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 4.6E-66 1.6E-70 552.9 28.1 256 546-837 2-257 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.8E-62 6.1E-67 526.6 23.6 237 548-833 4-253 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 5.8E-58 2E-62 503.0 25.2 267 528-837 1-273 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 5.2E-57 1.8E-61 496.3 25.3 250 544-836 18-272 (357)
5 2imq_X Salivary nitrophorin; f 100.0 4.2E-45 1.4E-49 393.0 16.5 228 549-835 4-234 (282)
6 1vyh_C Platelet-activating fac 100.0 2.3E-34 7.8E-39 325.3 35.9 267 191-525 108-409 (410)
7 4gqb_B Methylosome protein 50; 100.0 7.2E-34 2.5E-38 314.3 34.8 287 133-527 31-331 (344)
8 1nr0_A Actin interacting prote 100.0 3.7E-33 1.3E-37 331.8 43.0 362 134-525 149-609 (611)
9 2ymu_A WD-40 repeat protein; u 100.0 1.6E-32 5.6E-37 321.1 44.1 330 134-524 223-577 (577)
10 3ow8_A WD repeat-containing pr 100.0 4.8E-33 1.6E-37 304.1 35.8 261 143-525 49-319 (321)
11 1nr0_A Actin interacting prote 100.0 2.4E-32 8.3E-37 324.8 44.7 359 140-528 28-568 (611)
12 1erj_A Transcriptional repress 100.0 1.8E-32 6E-37 307.7 37.2 292 134-528 66-390 (393)
13 4g56_B MGC81050 protein; prote 100.0 1.5E-32 5.1E-37 304.7 33.5 285 191-535 42-351 (357)
14 1got_B GT-beta; complex (GTP-b 100.0 7.5E-32 2.6E-36 296.3 36.2 270 191-524 55-340 (340)
15 2ymu_A WD-40 repeat protein; u 100.0 7.8E-31 2.7E-35 306.9 45.1 358 134-525 18-414 (577)
16 2ynn_A Coatomer subunit beta'; 100.0 8.2E-31 2.8E-35 283.4 36.0 269 191-527 13-302 (304)
17 2hes_X YDR267CP; beta-propelle 100.0 1.2E-30 4.2E-35 285.6 35.4 285 134-527 16-328 (330)
18 2pbi_B Guanine nucleotide-bind 100.0 1.3E-30 4.3E-35 288.7 35.4 274 191-524 64-354 (354)
19 1vyh_C Platelet-activating fac 100.0 2.1E-30 7.3E-35 292.7 37.7 286 133-486 109-409 (410)
20 3iz6_a 40S ribosomal protein R 100.0 1.4E-31 4.8E-36 299.0 27.3 282 191-528 66-376 (380)
21 4ery_A WD repeat-containing pr 100.0 2.8E-30 9.4E-35 278.8 34.6 268 191-526 23-311 (312)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-30 8.8E-35 284.8 34.7 275 192-530 17-338 (345)
23 3ow8_A WD repeat-containing pr 100.0 1.5E-30 5E-35 284.4 30.9 239 191-531 32-283 (321)
24 3frx_A Guanine nucleotide-bind 100.0 5.2E-30 1.8E-34 279.2 34.0 277 191-527 17-317 (319)
25 2xzm_R RACK1; ribosome, transl 100.0 1.9E-29 6.5E-34 277.2 38.0 267 142-527 39-340 (343)
26 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-29 4.9E-34 314.1 35.9 380 87-525 25-659 (902)
27 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-28 6.6E-33 313.4 46.3 368 133-529 616-1118(1249)
28 4aow_A Guanine nucleotide-bind 100.0 9.4E-29 3.2E-33 267.9 36.9 276 191-528 38-338 (340)
29 2pm9_A Protein WEB1, protein t 100.0 1.3E-29 4.4E-34 283.1 30.2 306 149-527 43-414 (416)
30 1got_B GT-beta; complex (GTP-b 100.0 1E-28 3.5E-33 271.3 36.9 268 134-485 57-340 (340)
31 3vl1_A 26S proteasome regulato 100.0 1.5E-28 5E-33 275.5 36.6 323 138-528 64-420 (420)
32 1p22_A F-BOX/WD-repeat protein 100.0 5.1E-29 1.7E-33 282.8 32.0 271 133-530 134-417 (435)
33 2pm7_B Protein transport prote 100.0 6.6E-29 2.3E-33 267.5 31.1 237 191-527 9-285 (297)
34 1r5m_A SIR4-interacting protei 100.0 9.4E-29 3.2E-33 275.4 33.0 282 191-526 108-424 (425)
35 4gqb_B Methylosome protein 50; 100.0 1.1E-28 3.7E-33 272.8 33.2 239 133-489 83-332 (344)
36 1pgu_A Actin interacting prote 100.0 8.1E-28 2.8E-32 282.3 41.2 334 134-526 162-613 (615)
37 1gxr_A ESG1, transducin-like e 100.0 3.8E-27 1.3E-31 254.2 40.4 274 134-526 53-336 (337)
38 3dm0_A Maltose-binding peripla 100.0 5.9E-28 2E-32 291.0 37.7 277 133-527 383-693 (694)
39 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.1E-27 1.1E-31 268.4 41.5 297 135-527 122-442 (445)
40 4h5i_A Guanine nucleotide-exch 100.0 9.4E-29 3.2E-33 275.1 27.9 284 191-526 14-342 (365)
41 3v7d_B Cell division control p 100.0 1.4E-27 4.8E-32 272.0 37.6 288 135-532 125-426 (464)
42 3bg1_A Protein SEC13 homolog; 100.0 9.4E-29 3.2E-33 268.9 26.1 252 191-526 13-292 (316)
43 4gga_A P55CDC, cell division c 100.0 5.2E-28 1.8E-32 273.3 33.2 271 142-532 116-400 (420)
44 1erj_A Transcriptional repress 100.0 5.9E-28 2E-32 270.8 33.1 234 191-530 64-344 (393)
45 4ggc_A P55CDC, cell division c 100.0 9.5E-28 3.2E-32 257.5 33.1 276 135-530 28-318 (318)
46 3k26_A Polycomb protein EED; W 100.0 1.6E-28 5.6E-33 268.1 27.0 304 134-526 20-365 (366)
47 3zwl_B Eukaryotic translation 100.0 2.3E-27 8E-32 258.8 36.0 280 191-527 32-346 (369)
48 4g56_B MGC81050 protein; prote 100.0 6.8E-28 2.3E-32 267.2 31.3 280 86-487 49-342 (357)
49 2ynn_A Coatomer subunit beta'; 100.0 1.1E-27 3.8E-32 258.8 32.0 239 232-530 4-262 (304)
50 2pbi_B Guanine nucleotide-bind 100.0 4E-27 1.4E-31 260.5 37.1 270 134-485 66-354 (354)
51 2xzm_R RACK1; ribosome, transl 100.0 5.1E-27 1.7E-31 257.9 36.8 243 191-530 21-288 (343)
52 2hes_X YDR267CP; beta-propelle 100.0 1.7E-27 5.9E-32 260.6 32.4 240 191-527 14-280 (330)
53 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-27 1.3E-31 301.4 40.2 374 87-530 623-1161(1249)
54 3i2n_A WD repeat-containing pr 100.0 1E-27 3.4E-32 261.3 29.4 277 134-529 20-355 (357)
55 1k8k_C P40, ARP2/3 complex 41 100.0 3.9E-27 1.3E-31 258.5 33.4 272 191-527 8-361 (372)
56 3odt_A Protein DOA1; ubiquitin 100.0 6.7E-27 2.3E-31 249.9 34.1 266 191-528 18-297 (313)
57 2oaj_A Protein SNI1; WD40 repe 100.0 2.3E-27 7.8E-32 294.4 34.7 168 134-351 19-192 (902)
58 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-28 7.9E-33 285.3 22.8 306 148-527 180-517 (524)
59 1sq9_A Antiviral protein SKI8; 100.0 4E-27 1.4E-31 261.5 31.0 284 191-527 16-395 (397)
60 1r5m_A SIR4-interacting protei 100.0 1.5E-26 5.1E-31 257.5 34.1 287 191-527 45-361 (425)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-26 7.5E-31 261.4 35.8 266 191-532 118-396 (445)
62 3dwl_C Actin-related protein 2 100.0 8.2E-28 2.8E-32 265.7 23.1 267 191-525 11-377 (377)
63 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-26 7.1E-31 253.6 33.6 273 135-487 19-334 (345)
64 4e54_B DNA damage-binding prot 100.0 6.9E-28 2.4E-32 273.8 22.4 273 191-529 119-432 (435)
65 1pgu_A Actin interacting prote 100.0 3.2E-26 1.1E-30 268.7 36.1 307 139-526 27-365 (615)
66 4aez_A CDC20, WD repeat-contai 100.0 3.3E-26 1.1E-30 256.8 34.6 274 135-532 96-385 (401)
67 3iz6_a 40S ribosomal protein R 100.0 3.9E-27 1.3E-31 262.9 26.6 279 134-488 68-375 (380)
68 3gre_A Serine/threonine-protei 100.0 4.9E-27 1.7E-31 265.4 27.5 280 191-524 63-437 (437)
69 4ery_A WD repeat-containing pr 100.0 1.9E-25 6.4E-30 240.9 38.3 267 134-487 25-311 (312)
70 3ei3_B DNA damage-binding prot 100.0 1.5E-26 5.2E-31 256.6 30.4 267 191-527 73-382 (383)
71 3f3f_A Nucleoporin SEH1; struc 100.0 8.9E-27 3E-31 250.8 27.6 262 191-530 11-340 (351)
72 4a11_B DNA excision repair pro 100.0 1.3E-26 4.5E-31 256.9 28.3 275 191-533 43-371 (408)
73 3frx_A Guanine nucleotide-bind 99.9 9.4E-26 3.2E-30 245.6 33.0 269 134-487 19-316 (319)
74 3v7d_B Cell division control p 99.9 4.9E-26 1.7E-30 259.3 30.3 253 191-528 121-382 (464)
75 3jrp_A Fusion protein of prote 99.9 5.9E-26 2E-30 249.1 29.0 237 191-527 11-287 (379)
76 3mmy_A MRNA export factor; mRN 99.9 1E-25 3.5E-30 245.7 30.6 267 191-527 39-346 (368)
77 1p22_A F-BOX/WD-repeat protein 99.9 1.9E-25 6.6E-30 253.3 33.7 229 191-527 133-365 (435)
78 3dm0_A Maltose-binding peripla 99.9 6.6E-26 2.3E-30 273.1 31.4 242 191-530 382-635 (694)
79 3dw8_B Serine/threonine-protei 99.9 1E-25 3.5E-30 254.2 30.9 268 191-529 28-375 (447)
80 2pm9_A Protein WEB1, protein t 99.9 2.2E-26 7.4E-31 256.9 23.5 280 192-530 13-340 (416)
81 1gxr_A ESG1, transducin-like e 99.9 5.9E-25 2E-29 237.0 32.9 238 191-529 51-298 (337)
82 3vl1_A 26S proteasome regulato 99.9 1.9E-25 6.4E-30 250.2 29.3 288 193-528 58-366 (420)
83 1yfq_A Cell cycle arrest prote 99.9 1.6E-25 5.5E-30 242.9 27.5 267 191-525 11-322 (342)
84 4h5i_A Guanine nucleotide-exch 99.9 7.6E-26 2.6E-30 251.6 25.3 278 131-487 13-342 (365)
85 3mkq_A Coatomer beta'-subunit; 99.9 2.1E-24 7.2E-29 263.0 36.0 272 191-530 13-305 (814)
86 2j04_B YDR362CP, TAU91; beta p 99.9 5.5E-26 1.9E-30 265.2 19.7 236 200-527 170-428 (524)
87 4aow_A Guanine nucleotide-bind 99.9 1.1E-23 3.8E-28 227.9 35.7 272 133-487 39-336 (340)
88 3k26_A Polycomb protein EED; W 99.9 4.4E-25 1.5E-29 240.9 24.3 239 191-530 18-321 (366)
89 4gq1_A NUP37; propeller, trans 99.9 2.4E-25 8.3E-30 249.8 22.3 257 194-525 92-387 (393)
90 2pm7_B Protein transport prote 99.9 5.4E-24 1.9E-28 229.0 31.9 238 134-487 11-284 (297)
91 2aq5_A Coronin-1A; WD40 repeat 99.9 2.6E-24 8.9E-29 241.0 29.4 270 148-527 54-342 (402)
92 3bg1_A Protein SEC13 homolog; 99.9 2E-24 6.8E-29 234.8 26.6 240 134-487 15-292 (316)
93 1sq9_A Antiviral protein SKI8; 99.9 8E-24 2.7E-28 234.8 31.7 283 134-487 18-394 (397)
94 3dw8_B Serine/threonine-protei 99.9 2.1E-24 7.1E-29 243.5 27.1 305 132-525 28-444 (447)
95 3i2n_A WD repeat-containing pr 99.9 4.8E-24 1.6E-28 232.1 27.4 240 191-530 18-294 (357)
96 3ei3_B DNA damage-binding prot 99.9 1.7E-23 5.9E-28 232.0 32.3 265 134-488 75-382 (383)
97 3mkq_A Coatomer beta'-subunit; 99.9 1.7E-23 5.8E-28 255.0 34.9 306 134-527 15-386 (814)
98 3zwl_B Eukaryotic translation 99.9 5.4E-23 1.9E-27 224.2 34.8 278 134-488 34-346 (369)
99 2w18_A PALB2, fancn, partner a 99.9 6.5E-24 2.2E-28 231.0 26.9 264 194-525 42-355 (356)
100 3jro_A Fusion protein of prote 99.9 1.9E-24 6.3E-29 263.4 25.3 238 191-528 9-286 (753)
101 3odt_A Protein DOA1; ubiquitin 99.9 8.8E-23 3E-27 217.8 35.2 266 134-491 20-300 (313)
102 1k8k_C P40, ARP2/3 complex 41 99.9 6.8E-23 2.3E-27 224.6 31.6 271 135-487 11-360 (372)
103 2j04_A TAU60, YPL007P, hypothe 99.9 3.3E-24 1.1E-28 247.1 21.8 254 191-526 15-296 (588)
104 4a11_B DNA excision repair pro 99.9 2.5E-22 8.7E-27 222.3 36.1 331 134-526 45-404 (408)
105 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.1E-22 3.9E-27 231.7 33.0 235 191-527 102-391 (450)
106 3gre_A Serine/threonine-protei 99.9 4.8E-23 1.6E-27 232.6 29.2 291 134-485 65-437 (437)
107 2xyi_A Probable histone-bindin 99.9 2.4E-23 8.3E-28 236.1 25.8 246 191-526 128-409 (430)
108 3f3f_A Nucleoporin SEH1; struc 99.9 2.9E-22 9.9E-27 215.4 31.7 267 134-497 13-350 (351)
109 3dwl_C Actin-related protein 2 99.9 4.2E-23 1.4E-27 227.9 25.2 280 142-486 23-377 (377)
110 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-22 4.6E-27 224.2 28.4 261 191-529 19-338 (355)
111 4e54_B DNA damage-binding prot 99.9 4E-23 1.4E-27 234.5 22.4 285 90-490 131-433 (435)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 1.9E-22 6.5E-27 225.8 25.7 246 194-530 37-302 (402)
113 1l0q_A Surface layer protein; 99.9 2.3E-21 7.9E-26 215.0 34.0 251 148-528 9-276 (391)
114 1yfq_A Cell cycle arrest prote 99.9 8.7E-22 3E-26 213.5 29.1 263 134-485 13-321 (342)
115 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.8E-22 9.4E-27 228.5 26.3 238 192-525 5-337 (450)
116 3mmy_A MRNA export factor; mRN 99.9 1.8E-21 6.2E-26 212.0 31.5 265 133-485 40-343 (368)
117 4gq1_A NUP37; propeller, trans 99.9 6.5E-23 2.2E-27 230.0 20.0 262 148-487 108-388 (393)
118 3lrv_A PRE-mRNA-splicing facto 99.9 1.5E-22 5.2E-27 221.9 22.3 229 201-527 46-292 (343)
119 3jrp_A Fusion protein of prote 99.9 1.4E-21 4.7E-26 214.2 28.8 240 134-487 13-286 (379)
120 2j04_A TAU60, YPL007P, hypothe 99.9 2.4E-22 8.2E-27 231.6 23.5 122 191-343 85-213 (588)
121 4ggc_A P55CDC, cell division c 99.9 2.1E-21 7E-26 208.0 29.1 231 194-532 28-278 (318)
122 4gga_A P55CDC, cell division c 99.9 4.8E-21 1.6E-25 216.2 33.3 246 133-500 148-408 (420)
123 4aez_A CDC20, WD repeat-contai 99.9 1.7E-21 5.9E-26 218.3 29.1 226 193-527 95-336 (401)
124 3bws_A Protein LP49; two-domai 99.9 2.5E-21 8.6E-26 217.7 30.4 262 142-526 133-431 (433)
125 3lrv_A PRE-mRNA-splicing facto 99.9 3.8E-22 1.3E-26 218.8 23.0 260 142-524 48-330 (343)
126 2w18_A PALB2, fancn, partner a 99.9 5.1E-22 1.7E-26 216.2 22.9 206 191-486 111-355 (356)
127 3vu4_A KMHSV2; beta-propeller 99.9 2.6E-20 9E-25 205.9 26.9 229 232-528 10-272 (355)
128 2xyi_A Probable histone-bindin 99.9 3.8E-20 1.3E-24 209.7 28.4 242 144-489 143-411 (430)
129 1l0q_A Surface layer protein; 99.9 8E-19 2.7E-23 194.5 35.2 264 135-527 34-342 (391)
130 3jro_A Fusion protein of prote 99.8 2.6E-20 9E-25 226.8 24.3 240 134-487 11-284 (753)
131 3bws_A Protein LP49; two-domai 99.8 5.8E-19 2E-23 198.4 26.5 230 192-528 123-391 (433)
132 1nir_A Nitrite reductase; hemo 99.8 2.4E-18 8.2E-23 201.6 27.3 274 198-531 144-462 (543)
133 1nir_A Nitrite reductase; hemo 99.8 1.9E-17 6.5E-22 194.0 32.4 308 144-532 150-519 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.7E-17 9.4E-22 185.9 28.0 234 203-509 143-408 (415)
135 1k32_A Tricorn protease; prote 99.7 7E-16 2.4E-20 194.4 36.1 362 133-528 15-462 (1045)
136 3u4y_A Uncharacterized protein 99.7 9.1E-16 3.1E-20 165.8 26.3 264 141-527 8-304 (331)
137 2ecf_A Dipeptidyl peptidase IV 99.7 1.7E-15 5.7E-20 182.9 28.3 291 191-527 36-413 (741)
138 2hqs_A Protein TOLB; TOLB, PAL 99.7 8E-16 2.7E-20 173.8 23.7 264 193-526 64-386 (415)
139 2ojh_A Uncharacterized protein 99.7 1.8E-15 6.1E-20 158.7 24.6 243 148-518 19-293 (297)
140 3vgz_A Uncharacterized protein 99.7 3.7E-14 1.3E-18 153.9 32.5 257 140-518 50-335 (353)
141 1ri6_A Putative isomerase YBHE 99.7 8.9E-15 3E-19 157.7 27.0 268 144-526 6-307 (343)
142 1xfd_A DIP, dipeptidyl aminope 99.7 1.8E-15 6E-20 182.1 22.5 315 142-527 28-393 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.7 1.6E-14 5.5E-19 173.5 28.7 274 135-528 84-436 (706)
144 3o4h_A Acylamino-acid-releasin 99.7 1.6E-15 5.4E-20 178.4 19.3 224 191-525 21-274 (582)
145 1k32_A Tricorn protease; prote 99.7 2.2E-14 7.6E-19 180.7 30.8 299 195-526 110-501 (1045)
146 1pby_B Quinohemoprotein amine 99.6 2.7E-14 9.2E-19 153.5 25.8 279 148-497 8-320 (337)
147 3vgz_A Uncharacterized protein 99.6 5.9E-14 2E-18 152.3 26.9 241 192-528 41-304 (353)
148 2ecf_A Dipeptidyl peptidase IV 99.6 2E-14 6.8E-19 173.5 24.3 278 193-525 110-457 (741)
149 3hfq_A Uncharacterized protein 99.6 3.6E-13 1.2E-17 146.8 27.9 248 191-526 39-316 (347)
150 2z3z_A Dipeptidyl aminopeptida 99.6 1.5E-13 5E-18 165.1 26.2 272 192-525 82-387 (706)
151 2oit_A Nucleoporin 214KDA; NH2 99.6 1.2E-14 4.1E-19 165.4 15.7 111 418-528 148-279 (434)
152 1jmx_B Amine dehydrogenase; ox 99.6 4.2E-14 1.5E-18 153.0 18.6 69 197-273 5-76 (349)
153 1xfd_A DIP, dipeptidyl aminope 99.6 1.7E-14 5.7E-19 173.5 16.2 277 193-524 18-341 (723)
154 1jmx_B Amine dehydrogenase; ox 99.6 7.2E-13 2.4E-17 143.3 27.2 283 142-497 10-335 (349)
155 1pby_B Quinohemoprotein amine 99.6 3.5E-13 1.2E-17 144.8 24.5 258 204-530 2-313 (337)
156 2ojh_A Uncharacterized protein 99.6 2.1E-13 7.2E-18 142.8 21.6 213 208-527 17-258 (297)
157 3u4y_A Uncharacterized protein 99.5 1.5E-12 5E-17 140.5 27.3 222 198-527 4-252 (331)
158 1q7f_A NHL, brain tumor CG1071 99.5 7.7E-12 2.6E-16 132.4 32.3 234 192-530 30-283 (286)
159 1z68_A Fibroblast activation p 99.5 7.7E-14 2.6E-18 168.0 18.5 285 196-527 20-391 (719)
160 3o4h_A Acylamino-acid-releasin 99.5 4E-13 1.4E-17 157.9 22.7 253 138-526 29-314 (582)
161 2oit_A Nucleoporin 214KDA; NH2 99.5 2.5E-13 8.5E-18 154.5 19.9 176 137-348 43-229 (434)
162 3pe7_A Oligogalacturonate lyas 99.5 4.4E-12 1.5E-16 139.9 25.7 271 197-527 41-382 (388)
163 1z68_A Fibroblast activation p 99.5 5.5E-13 1.9E-17 160.5 19.6 316 145-529 30-445 (719)
164 3scy_A Hypothetical bacterial 99.5 2.6E-11 8.8E-16 132.9 29.4 254 191-526 49-336 (361)
165 3hfq_A Uncharacterized protein 99.4 1.1E-11 3.8E-16 134.9 25.0 206 191-486 85-315 (347)
166 1ri6_A Putative isomerase YBHE 99.4 6.7E-12 2.3E-16 135.0 22.7 222 205-526 7-261 (343)
167 3fvz_A Peptidyl-glycine alpha- 99.4 3.6E-11 1.2E-15 130.9 26.8 250 191-526 23-321 (329)
168 4a2l_A BT_4663, two-component 99.4 2.4E-10 8.3E-15 139.6 36.9 352 133-559 263-649 (795)
169 1jof_A Carboxy-CIS,CIS-muconat 99.4 1.3E-11 4.6E-16 136.1 21.7 238 192-527 40-341 (365)
170 3scy_A Hypothetical bacterial 99.4 3.6E-10 1.2E-14 123.8 31.1 227 192-506 100-359 (361)
171 3e5z_A Putative gluconolactona 99.3 1.7E-10 5.8E-15 122.9 24.3 221 191-518 27-278 (296)
172 4a5s_A Dipeptidyl peptidase 4 99.3 5.6E-11 1.9E-15 144.1 22.1 287 193-526 18-397 (740)
173 3azo_A Aminopeptidase; POP fam 99.3 1.9E-10 6.5E-15 136.8 26.1 103 422-525 244-365 (662)
174 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.5E-10 5E-15 127.8 21.8 246 141-489 50-342 (365)
175 3v9f_A Two-component system se 99.3 4.3E-09 1.5E-13 128.3 36.7 355 133-559 258-646 (781)
176 3fvz_A Peptidyl-glycine alpha- 99.3 7.5E-10 2.6E-14 120.4 26.7 206 192-489 91-323 (329)
177 2oiz_A Aromatic amine dehydrog 99.3 6.8E-10 2.3E-14 122.8 25.9 79 425-506 259-355 (361)
178 3c5m_A Oligogalacturonate lyas 99.2 5E-10 1.7E-14 123.2 23.4 289 193-526 37-381 (396)
179 2oiz_A Aromatic amine dehydrog 99.2 5.1E-10 1.7E-14 123.8 22.5 268 202-528 14-335 (361)
180 2gop_A Trilobed protease; beta 99.2 3.2E-09 1.1E-13 115.1 28.5 95 428-526 223-330 (347)
181 2z2n_A Virginiamycin B lyase; 99.2 5E-08 1.7E-12 102.6 36.4 266 134-526 16-294 (299)
182 1q7f_A NHL, brain tumor CG1071 99.2 9E-09 3.1E-13 108.6 30.6 231 137-487 34-279 (286)
183 2dg1_A DRP35, lactonase; beta 99.2 1.4E-08 4.8E-13 109.5 30.9 223 191-517 44-300 (333)
184 4a5s_A Dipeptidyl peptidase 4 99.2 5.6E-09 1.9E-13 126.5 29.1 105 144-273 29-143 (740)
185 2dg1_A DRP35, lactonase; beta 99.1 2.1E-09 7.3E-14 116.0 20.9 228 192-525 6-261 (333)
186 4a2l_A BT_4663, two-component 99.1 9.4E-08 3.2E-12 116.6 38.0 319 133-526 215-570 (795)
187 3e5z_A Putative gluconolactona 99.1 3.8E-08 1.3E-12 104.5 29.7 222 141-491 38-289 (296)
188 3hxj_A Pyrrolo-quinoline quino 99.1 1.7E-09 6E-14 116.1 18.6 303 125-526 11-323 (330)
189 1rwi_B Serine/threonine-protei 99.1 1.8E-08 6.2E-13 104.9 25.4 230 193-527 25-264 (270)
190 2xdw_A Prolyl endopeptidase; a 99.1 3.2E-08 1.1E-12 119.2 29.6 233 193-529 126-416 (710)
191 3dsm_A Uncharacterized protein 99.1 2.9E-08 1E-12 107.9 26.5 257 150-526 16-301 (328)
192 2gop_A Trilobed protease; beta 99.1 1E-08 3.4E-13 111.1 22.5 99 422-526 173-290 (347)
193 2z2n_A Virginiamycin B lyase; 99.1 2.9E-07 1E-11 96.7 33.1 229 191-525 14-253 (299)
194 3v9f_A Two-component system se 99.1 2.6E-07 8.9E-12 112.5 37.3 323 132-526 18-391 (781)
195 2bkl_A Prolyl endopeptidase; m 99.1 6E-09 2E-13 125.3 22.4 232 192-529 121-399 (695)
196 3azo_A Aminopeptidase; POP fam 99.1 6E-09 2E-13 123.8 21.9 236 191-526 23-322 (662)
197 3no2_A Uncharacterized protein 99.0 3.5E-08 1.2E-12 104.9 25.4 212 202-514 4-230 (276)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 1E-07 3.5E-12 101.3 28.1 231 192-527 18-299 (314)
199 3dsm_A Uncharacterized protein 99.0 6E-08 2.1E-12 105.4 25.3 233 133-495 44-309 (328)
200 3pe7_A Oligogalacturonate lyas 99.0 1.3E-08 4.4E-13 112.0 19.6 73 193-273 82-179 (388)
201 2qc5_A Streptogramin B lactona 99.0 1.7E-06 5.7E-11 90.8 33.8 263 134-524 21-297 (300)
202 1rwi_B Serine/threonine-protei 98.9 4.4E-07 1.5E-11 94.3 28.0 225 136-487 27-263 (270)
203 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.9E-07 9.8E-12 101.4 26.3 315 139-524 50-375 (376)
204 2bkl_A Prolyl endopeptidase; m 98.9 9.3E-08 3.2E-12 114.9 23.3 71 195-269 171-259 (695)
205 1qks_A Cytochrome CD1 nitrite 98.9 2E-06 6.7E-11 100.8 33.4 271 144-528 168-478 (567)
206 2qc5_A Streptogramin B lactona 98.8 7.1E-06 2.4E-10 86.0 33.2 229 191-525 19-258 (300)
207 2xdw_A Prolyl endopeptidase; a 98.8 5E-07 1.7E-11 108.7 27.0 93 152-271 152-268 (710)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 2.1E-06 7.3E-11 91.0 28.4 66 422-487 228-298 (314)
209 3hxj_A Pyrrolo-quinoline quino 98.8 2.3E-07 7.7E-12 99.5 20.5 256 134-487 61-323 (330)
210 3dr2_A Exported gluconolactona 98.8 5.1E-07 1.7E-11 96.7 23.1 69 192-270 45-115 (305)
211 3c5m_A Oligogalacturonate lyas 98.8 3.9E-07 1.3E-11 99.9 21.1 107 418-527 186-329 (396)
212 1yr2_A Prolyl oligopeptidase; 98.7 6.7E-07 2.3E-11 108.2 24.9 231 193-528 164-442 (741)
213 3ott_A Two-component system se 98.7 4.5E-06 1.5E-10 101.2 31.4 318 134-527 233-586 (758)
214 3g4e_A Regucalcin; six bladed 98.7 2.9E-06 9.9E-11 90.4 26.4 207 195-507 16-249 (297)
215 3no2_A Uncharacterized protein 98.7 4.6E-07 1.6E-11 96.2 19.2 181 251-528 4-196 (276)
216 3hrp_A Uncharacterized protein 98.7 2.8E-06 9.5E-11 95.5 26.6 236 192-525 131-408 (409)
217 3ott_A Two-component system se 98.7 2.6E-05 9E-10 94.4 35.5 318 134-527 147-502 (758)
218 2ghs_A AGR_C_1268P; regucalcin 98.6 1E-05 3.5E-10 87.6 27.7 213 195-513 52-288 (326)
219 2qe8_A Uncharacterized protein 98.6 2.1E-06 7E-11 93.8 21.3 258 192-520 17-314 (343)
220 3sjl_D Methylamine dehydrogena 98.6 6.3E-06 2.1E-10 91.5 25.1 277 197-531 38-367 (386)
221 3q7m_A Lipoprotein YFGL, BAMB; 98.6 5.2E-06 1.8E-10 91.2 24.2 257 203-528 53-338 (376)
222 3g4e_A Regucalcin; six bladed 98.6 2.6E-05 8.8E-10 83.0 28.6 216 142-478 24-262 (297)
223 1xip_A Nucleoporin NUP159; bet 98.6 1E-06 3.4E-11 98.1 17.9 175 192-474 38-230 (388)
224 1qks_A Cytochrome CD1 nitrite 98.6 1.9E-05 6.4E-10 92.5 29.0 233 199-527 163-421 (567)
225 2mad_H Methylamine dehydrogena 98.5 6.8E-05 2.3E-09 83.0 31.6 67 464-531 273-354 (373)
226 2hz6_A Endoplasmic reticulum t 98.5 4.4E-08 1.5E-12 108.6 5.7 190 202-503 8-207 (369)
227 3iuj_A Prolyl endopeptidase; h 98.5 3.7E-06 1.3E-10 101.0 22.9 88 440-527 305-405 (693)
228 1yr2_A Prolyl oligopeptidase; 98.5 5.2E-06 1.8E-10 100.4 23.6 72 194-272 211-304 (741)
229 4gz1_A Tyrosyl-DNA phosphodies 98.5 8.6E-07 2.9E-11 91.4 13.5 131 553-719 9-144 (256)
230 4fva_A 5'-tyrosyl-DNA phosphod 98.5 6.7E-07 2.3E-11 92.3 11.7 132 552-719 12-148 (256)
231 3hrp_A Uncharacterized protein 98.5 5E-05 1.7E-09 85.2 27.7 107 137-273 135-251 (409)
232 3sjl_D Methylamine dehydrogena 98.4 7.4E-05 2.5E-09 82.9 27.9 103 141-273 43-171 (386)
233 2ghs_A AGR_C_1268P; regucalcin 98.4 7.6E-05 2.6E-09 80.6 26.8 213 144-478 63-292 (326)
234 3dr2_A Exported gluconolactona 98.4 3.4E-05 1.2E-09 82.3 23.3 57 425-483 244-302 (305)
235 4gew_A 5'-tyrosyl-DNA phosphod 98.3 1.5E-06 5.2E-11 96.0 11.6 133 551-719 117-254 (362)
236 3c75_H MADH, methylamine dehyd 98.3 8.9E-05 3E-09 83.5 25.6 93 151-273 99-211 (426)
237 4f1h_A Tyrosyl-DNA phosphodies 98.3 4.4E-06 1.5E-10 84.9 13.7 45 675-719 94-138 (250)
238 1ako_A Exonuclease III; AP-end 98.3 1.8E-06 6E-11 90.2 10.8 129 554-719 1-136 (268)
239 3teb_A Endonuclease/exonucleas 98.3 4E-06 1.4E-10 87.3 12.3 148 554-719 4-165 (266)
240 1xip_A Nucleoporin NUP159; bet 98.2 1.9E-05 6.5E-10 87.8 16.5 99 422-527 90-191 (388)
241 2hz6_A Endoplasmic reticulum t 98.2 2.4E-07 8.1E-12 102.7 0.6 95 430-528 92-193 (369)
242 2mad_H Methylamine dehydrogena 98.2 0.0008 2.7E-08 74.4 28.5 108 138-272 73-196 (373)
243 1yiq_A Quinohemoprotein alcoho 98.1 0.00019 6.4E-09 86.1 24.6 54 478-531 454-509 (689)
244 2fp8_A Strictosidine synthase; 98.1 0.00039 1.3E-08 74.6 24.9 70 193-271 20-110 (322)
245 1kb0_A Quinohemoprotein alcoho 98.1 0.00014 4.9E-09 86.9 23.1 117 141-278 76-206 (677)
246 1yiq_A Quinohemoprotein alcoho 98.0 0.00033 1.1E-08 84.0 24.1 81 439-519 454-541 (689)
247 1mda_H Methylamine dehydrogena 98.0 0.00017 5.9E-09 79.6 18.4 90 152-271 47-158 (368)
248 3iuj_A Prolyl endopeptidase; h 98.0 0.00013 4.5E-09 87.4 18.4 105 422-526 236-358 (693)
249 3g6s_A Putative endonuclease/e 97.9 2.3E-05 7.8E-10 82.0 9.8 134 553-719 3-158 (267)
250 3l1w_A Uncharacterized protein 97.9 3E-05 1E-09 80.6 10.1 132 554-719 1-152 (257)
251 1npe_A Nidogen, entactin; glyc 97.8 0.011 3.9E-07 61.1 28.7 74 422-495 169-246 (267)
252 3mpr_A Putative endonuclease/e 97.8 3.5E-05 1.2E-09 82.4 9.4 134 553-719 6-162 (298)
253 1zwx_A SMCL, sphingomyelinase- 97.8 4.2E-05 1.4E-09 81.5 9.9 46 674-719 128-179 (301)
254 1kb0_A Quinohemoprotein alcoho 97.8 0.0026 9.1E-08 75.9 25.6 72 440-512 457-535 (677)
255 2jc4_A Exodeoxyribonuclease II 97.8 5E-05 1.7E-09 78.5 8.8 125 555-718 2-130 (256)
256 1mda_H Methylamine dehydrogena 97.7 0.0013 4.3E-08 72.7 20.1 102 427-530 219-349 (368)
257 2ddr_A Sphingomyelin phosphodi 97.6 0.00023 7.9E-09 75.7 11.7 46 674-719 128-179 (306)
258 2qe8_A Uncharacterized protein 97.6 0.0023 7.8E-08 69.4 19.8 84 242-349 17-110 (343)
259 1vyb_A ORF2 contains A reverse 97.6 0.00026 8.8E-09 72.0 10.6 113 553-703 7-121 (238)
260 3i41_A Beta-hemolysin; beta to 97.6 0.00018 6.3E-09 77.6 9.9 47 673-719 146-198 (317)
261 1npe_A Nidogen, entactin; glyc 97.5 0.053 1.8E-06 55.9 27.5 105 423-527 125-238 (267)
262 2voa_A AF_EXO, XTHA, exodeoxyr 97.4 0.00058 2E-08 70.5 10.9 37 554-594 2-38 (257)
263 1wdu_A TRAS1 ORF2P; four-layer 97.4 0.00027 9.4E-09 72.9 8.3 120 553-718 19-143 (245)
264 2a40_B Deoxyribonuclease-1; WA 97.3 0.0002 6.9E-09 74.7 5.3 70 630-702 60-139 (260)
265 2jc5_A Exodeoxyribonuclease; h 97.3 0.00031 1.1E-08 72.5 6.7 125 554-718 2-133 (259)
266 2o3h_A DNA-(apurinic or apyrim 97.2 0.0002 6.8E-09 75.6 4.4 39 553-595 28-67 (285)
267 3c75_H MADH, methylamine dehyd 97.1 0.016 5.5E-07 65.0 19.5 116 201-349 82-217 (426)
268 2iwa_A Glutamine cyclotransfer 97.1 0.065 2.2E-06 56.1 22.7 186 243-527 22-237 (266)
269 3nol_A Glutamine cyclotransfer 97.1 0.038 1.3E-06 57.5 20.0 174 242-515 43-243 (262)
270 1hd7_A DNA-(apurinic or apyrim 97.0 0.00037 1.3E-08 75.1 4.8 129 553-719 61-196 (318)
271 2j63_A AP-endonuclease; base e 97.0 0.0012 4.2E-08 75.0 8.9 38 553-594 149-190 (467)
272 1w6s_A Methanol dehydrogenase 96.9 0.093 3.2E-06 61.5 24.4 66 206-279 124-199 (599)
273 1kv9_A Type II quinohemoprotei 96.9 0.064 2.2E-06 63.8 23.4 111 478-591 437-552 (668)
274 1kv9_A Type II quinohemoprotei 96.9 0.14 4.7E-06 60.9 26.1 77 438-515 436-520 (668)
275 2ad6_A Methanol dehydrogenase 96.9 0.057 1.9E-06 63.0 22.0 69 203-279 115-193 (571)
276 2ei9_A Non-LTR retrotransposon 96.7 0.00092 3.1E-08 69.2 4.1 36 554-593 8-43 (240)
277 3nok_A Glutaminyl cyclase; bet 96.7 0.066 2.3E-06 55.8 18.0 158 133-349 55-218 (268)
278 3mbr_X Glutamine cyclotransfer 96.6 0.24 8.2E-06 50.9 21.8 177 239-515 16-222 (243)
279 3v65_B Low-density lipoprotein 96.6 0.99 3.4E-05 49.5 28.7 99 144-271 89-190 (386)
280 3g91_A MTH0212, exodeoxyribonu 96.6 0.001 3.5E-08 69.3 3.9 37 554-594 4-41 (265)
281 2fp8_A Strictosidine synthase; 96.6 0.16 5.6E-06 53.8 21.3 103 422-526 187-312 (322)
282 2iwa_A Glutamine cyclotransfer 96.5 0.023 8E-07 59.5 13.6 109 422-530 23-138 (266)
283 1flg_A Protein (quinoprotein e 96.5 0.49 1.7E-05 55.1 26.4 52 478-530 465-519 (582)
284 1fwx_A Nitrous oxide reductase 96.5 0.31 1.1E-05 56.4 23.6 259 141-489 100-432 (595)
285 1ijq_A LDL receptor, low-densi 96.5 1.2 4E-05 47.3 29.7 102 145-271 4-108 (316)
286 3nol_A Glutamine cyclotransfer 96.4 0.1 3.5E-06 54.2 17.7 160 133-350 43-210 (262)
287 2ece_A 462AA long hypothetical 96.4 0.65 2.2E-05 52.0 24.9 68 196-272 142-238 (462)
288 2ece_A 462AA long hypothetical 96.3 0.27 9.1E-06 55.1 21.3 74 195-273 85-175 (462)
289 3v64_C Agrin; beta propeller, 96.3 1.6 5.4E-05 47.1 29.6 72 192-271 73-147 (349)
290 3sov_A LRP-6, low-density lipo 96.3 1.4 4.8E-05 47.0 26.4 102 144-271 6-110 (318)
291 1k3i_A Galactose oxidase precu 96.2 0.33 1.1E-05 57.3 22.5 70 196-272 247-324 (656)
292 3p5b_L Low density lipoprotein 96.1 2.2 7.4E-05 47.0 31.1 103 144-271 85-190 (400)
293 2p4o_A Hypothetical protein; p 96.0 1.8 6.2E-05 45.3 28.3 69 193-271 33-104 (306)
294 1flg_A Protein (quinoprotein e 96.0 1.8 6E-05 50.4 27.2 85 438-523 464-557 (582)
295 3nok_A Glutaminyl cyclase; bet 95.8 0.042 1.4E-06 57.3 11.0 106 423-531 58-168 (268)
296 4hw6_A Hypothetical protein, I 95.8 3.2 0.00011 46.2 27.6 59 193-260 140-200 (433)
297 3m0c_C LDL receptor, low-densi 95.8 4.5 0.00015 48.8 30.2 77 191-271 423-502 (791)
298 2ad6_A Methanol dehydrogenase 95.5 0.83 2.8E-05 53.0 21.7 74 196-278 239-342 (571)
299 1w6s_A Methanol dehydrogenase 95.2 3.4 0.00012 48.1 25.6 76 439-516 452-536 (599)
300 3ngq_A CCR4-NOT transcription 95.2 0.016 5.5E-07 64.3 5.3 31 689-719 195-225 (398)
301 1sr4_B CDT B, cytolethal diste 95.2 0.13 4.5E-06 53.3 11.8 37 676-718 121-157 (261)
302 3mbr_X Glutamine cyclotransfer 95.1 0.21 7.1E-06 51.4 13.3 107 422-530 23-136 (243)
303 3tc9_A Hypothetical hydrolase; 95.1 2.7 9.4E-05 46.7 23.5 58 193-259 138-197 (430)
304 1k3i_A Galactose oxidase precu 94.8 2 6.8E-05 50.5 22.5 70 196-271 190-274 (656)
305 1fwx_A Nitrous oxide reductase 94.6 0.64 2.2E-05 53.8 16.8 92 423-515 280-406 (595)
306 2xe4_A Oligopeptidase B; hydro 94.4 0.82 2.8E-05 54.9 18.3 69 193-271 175-256 (751)
307 2xe4_A Oligopeptidase B; hydro 94.4 0.96 3.3E-05 54.3 18.8 102 424-525 275-396 (751)
308 3v64_C Agrin; beta propeller, 93.8 8.6 0.00029 41.2 28.7 103 422-524 161-272 (349)
309 4a0p_A LRP6, LRP-6, low-densit 93.7 14 0.00047 43.3 30.8 100 145-271 9-111 (628)
310 3m0c_C LDL receptor, low-densi 93.5 17 0.00058 43.7 29.0 103 422-524 516-629 (791)
311 2xbg_A YCF48-like protein; pho 93.4 9.2 0.00031 40.4 32.0 105 419-524 204-319 (327)
312 1ijq_A LDL receptor, low-densi 93.1 10 0.00034 39.9 29.7 105 422-526 122-237 (316)
313 2xbg_A YCF48-like protein; pho 92.8 11 0.00039 39.7 23.8 64 422-486 252-320 (327)
314 3v65_B Low-density lipoprotein 92.7 13 0.00046 40.3 27.9 103 422-524 204-315 (386)
315 4a0p_A LRP6, LRP-6, low-densit 92.3 21 0.00072 41.6 30.1 103 423-525 126-235 (628)
316 4hw6_A Hypothetical protein, I 92.1 17 0.00058 40.2 26.6 101 143-272 153-260 (433)
317 1n7d_A LDL receptor, low-densi 92.1 0.39 1.3E-05 57.3 10.1 72 423-494 543-621 (699)
318 2f1n_A CDT B, cytolethal diste 91.8 0.48 1.7E-05 48.7 8.8 38 676-719 130-167 (262)
319 4b8c_D Glucose-repressible alc 91.2 0.03 1E-06 67.4 -1.0 33 687-719 545-577 (727)
320 3p5b_L Low density lipoprotein 91.1 20 0.00068 39.1 30.7 106 422-527 204-320 (400)
321 3sov_A LRP-6, low-density lipo 87.6 30 0.001 36.3 25.7 105 423-527 125-238 (318)
322 3qqz_A Putative uncharacterize 86.6 31 0.001 35.3 21.3 73 193-270 71-150 (255)
323 2ism_A Putative oxidoreductase 86.5 37 0.0013 36.2 20.2 25 244-268 33-57 (352)
324 3kya_A Putative phosphatase; s 86.5 48 0.0016 37.4 25.1 61 193-262 140-214 (496)
325 2p4o_A Hypothetical protein; p 86.0 34 0.0012 35.3 27.3 63 462-525 171-240 (306)
326 1n7d_A LDL receptor, low-densi 84.3 6.5 0.00022 46.6 13.3 86 440-525 519-612 (699)
327 3s94_A LRP-6, low-density lipo 81.8 83 0.0028 36.4 26.4 73 192-271 40-115 (619)
328 3pbp_A Nucleoporin NUP82; beta 78.1 33 0.0011 38.0 14.8 113 141-271 31-158 (452)
329 3amr_A 3-phytase; beta-propell 76.8 85 0.0029 33.7 24.4 59 201-270 38-107 (355)
330 3s94_A LRP-6, low-density lipo 75.4 1.2E+02 0.0043 34.9 28.6 72 192-271 349-423 (619)
331 1bpo_A Protein (clathrin); cla 74.2 93 0.0032 34.6 17.0 142 102-270 61-234 (494)
332 3a9g_A Putative uncharacterize 71.3 29 0.00099 37.1 12.4 69 420-488 29-114 (354)
333 3b7f_A Glycosyl hydrolase, BNR 67.7 74 0.0025 34.0 15.0 93 397-489 24-148 (394)
334 2p9w_A MAL S 1 allergenic prot 66.6 1.4E+02 0.0047 31.8 21.5 68 196-270 17-108 (334)
335 1tl2_A L10, protein (tachylect 65.3 11 0.00037 38.1 6.7 65 193-269 42-114 (236)
336 3pbp_A Nucleoporin NUP82; beta 63.3 27 0.00093 38.6 10.0 115 140-264 75-205 (452)
337 3ei3_A DNA damage-binding prot 62.8 3E+02 0.01 34.4 34.4 85 441-528 808-914 (1158)
338 2ism_A Putative oxidoreductase 58.0 98 0.0033 32.8 13.4 68 420-488 31-114 (352)
339 1tl2_A L10, protein (tachylect 56.1 23 0.00079 35.7 7.2 98 421-521 42-157 (236)
340 3tc9_A Hypothetical hydrolase; 55.3 60 0.0021 35.6 11.4 106 420-526 137-256 (430)
341 3amr_A 3-phytase; beta-propell 52.7 1.8E+02 0.0061 31.1 14.1 73 195-269 133-208 (355)
342 2p9w_A MAL S 1 allergenic prot 51.2 1.3E+02 0.0043 32.0 12.5 88 439-526 99-214 (334)
343 2xzh_A Clathrin heavy chain 1; 49.9 2.7E+02 0.0091 29.8 15.3 162 145-348 120-297 (365)
344 4gq2_M Nucleoporin NUP120; bet 46.2 57 0.002 40.0 10.1 34 191-224 235-268 (950)
345 1xi4_A Clathrin heavy chain; a 45.4 1.4E+02 0.0047 38.3 13.1 100 147-270 121-234 (1630)
346 3das_A Putative oxidoreductase 44.7 1.5E+02 0.0052 31.5 12.1 72 193-270 33-115 (347)
347 1cru_A Protein (soluble quinop 40.5 1.8E+02 0.006 32.1 12.3 58 193-256 28-95 (454)
348 3pt1_A UPF0364 protein YMR027W 39.3 5.4 0.00018 44.7 -0.5 18 758-775 373-390 (471)
349 3s25_A Hypothetical 7-bladed b 39.0 3.4E+02 0.012 27.9 14.0 79 440-522 88-171 (302)
350 3sre_A PON1, serum paraoxonase 34.3 1.5E+02 0.0051 31.7 10.0 71 191-270 164-251 (355)
351 3b7f_A Glycosyl hydrolase, BNR 34.2 2.3E+02 0.0078 30.0 11.7 91 429-520 21-140 (394)
352 4gq2_M Nucleoporin NUP120; bet 33.9 1E+02 0.0035 37.8 9.6 37 313-349 237-274 (950)
353 4fhn_B Nucleoporin NUP120; pro 33.3 46 0.0016 41.7 6.5 34 191-224 237-270 (1139)
354 3a9g_A Putative uncharacterize 32.9 74 0.0025 33.8 7.3 56 193-257 30-92 (354)
355 2g8s_A Glucose/sorbosone dehyd 30.9 2.4E+02 0.0083 29.6 11.0 67 421-487 19-106 (353)
356 3s25_A Hypothetical 7-bladed b 30.6 1.5E+02 0.0052 30.7 9.1 83 439-525 128-212 (302)
357 3sre_A PON1, serum paraoxonase 29.6 1.3E+02 0.0044 32.2 8.4 61 193-259 222-284 (355)
358 2be1_A Serine/threonine-protei 25.9 2E+02 0.0068 30.5 9.0 28 323-350 111-139 (339)
359 4fhn_B Nucleoporin NUP120; pro 25.9 1.1E+02 0.0039 38.1 8.2 33 317-349 243-276 (1139)
360 2xzh_A Clathrin heavy chain 1; 21.7 7.5E+02 0.026 26.3 16.4 69 440-508 126-209 (365)
361 1cru_A Protein (soluble quinop 20.7 7.5E+02 0.026 26.9 12.9 58 420-477 27-99 (454)
362 1bpo_A Protein (clathrin); cla 20.2 9.1E+02 0.031 26.8 16.1 70 439-508 124-208 (494)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=4.6e-66 Score=552.93 Aligned_cols=256 Identities=28% Similarity=0.602 Sum_probs=229.5
Q ss_pred cccccceeeEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhh
Q 003217 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (838)
Q Consensus 546 y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 625 (838)
|+...+++|+++|||||+.+| +++|.+||.....+||||||||||+++++..+. ..++...+.|.+.|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~---------~~~~~~~~~W~~~i~~ 71 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFF---------FHDTPKEEEWFKAVSE 71 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHT---------TCCCHHHHHHHHHHHH
T ss_pred CceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhc---------ccCcchHHHHHHHHHH
Confidence 778889999999999998877 588999999766679999999999987643221 1223345889999999
Q ss_pred hcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchH
Q 003217 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (838)
Q Consensus 626 ~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (838)
+|+++..|++|++.+|+||+|+||||+++.++|++|++++|+||++|.+||||||+|||.+++++|||||||||||++++
T Consensus 72 ~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~ 151 (313)
T 3mtc_A 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEY 151 (313)
T ss_dssp HSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHH
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003217 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (838)
++||+||.+|++++.|.+.... .....+.+||+|||||||||||+.++++++++
T Consensus 152 ~~Rn~d~~~I~~~l~f~~~~~~--------------------------~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~ 205 (313)
T 3mtc_A 152 ERRNQDYKDICSRMQFCQPDPS--------------------------LPPLTISNHDVILWLGDLNYRIEELDVEKVKK 205 (313)
T ss_dssp HHHHHHHHHHHHHCCBCCSCSS--------------------------SCCBCTTSSSEEEEEEECCCCBCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCc--------------------------cCCccccCCceEEEeccccccccCCCHHHHHH
Confidence 9999999999999999753211 00113678999999999999998679999999
Q ss_pred HhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccCC
Q 003217 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGT 837 (838)
Q Consensus 786 ~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~~ 837 (838)
+|++++|+.|+++|||+++|++|++|.||+|++|+|||||||++||++|..+
T Consensus 206 ~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts 257 (313)
T 3mtc_A 206 LIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTS 257 (313)
T ss_dssp HHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCS
T ss_pred HHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccc
Confidence 9999999999999999999999999999999999999999999999998764
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.8e-62 Score=526.57 Aligned_cols=237 Identities=29% Similarity=0.513 Sum_probs=202.6
Q ss_pred cccceeeEEEEEEeCCCCCCcccccccccCC-----------CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcch
Q 003217 548 RMENLKILAGTWNVGQGRASQDALISWLGSA-----------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVG 616 (838)
Q Consensus 548 ~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-----------~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (838)
+...++||++|||||+..| +++|.+||.+. ..++|||||||||+.+. .
T Consensus 4 ~~~~i~i~vgTwNv~g~~p-~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~--------------------~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPP-PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG--------------------D 62 (316)
T ss_dssp --CEEEEEEEEEECTTSCC-CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSC--------------------H
T ss_pred CCCeEEEEEEEeEcCCcCC-CcchhHhhcccccccCcccccccCCCcEEEEeccccccc--------------------h
Confidence 3456899999999998655 68999999853 12479999999998541 2
Q ss_pred hhHHHHHhhhcCC--CCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEE
Q 003217 617 HWWLDMIGKILDD--GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694 (838)
Q Consensus 617 ~~w~~~~~~~l~~--~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv 694 (838)
+.|.+.|.++|++ ...|.+|++.+|+||+|+||+|+++.++|++|++++|+||++|.+||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 6799999999964 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceee
Q 003217 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (838)
Q Consensus 695 ~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (838)
|||||||++++++||+||.+|++++.|...... ......++||||||||||||
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~---------------------------~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN---------------------------AFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC----------------------------------CCTTTTSSEEEEEEECCCC
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC---------------------------ccccCCcCCeEEEcCCccCC
Confidence 999999999999999999999999998642110 00112468999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCC
Q 003217 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAG 833 (838)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~ 833 (838)
|++ ++++++++|++++|+.|+++|||++||++|++|.||+|++|+|||||||++|+.+
T Consensus 196 i~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~ 253 (316)
T 4a9c_A 196 LDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD 253 (316)
T ss_dssp BSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSS
T ss_pred cCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcc
Confidence 996 9999999999999999999999999999999999999999999999999999964
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=5.8e-58 Score=503.05 Aligned_cols=267 Identities=29% Similarity=0.497 Sum_probs=234.7
Q ss_pred CCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecc-cCccchhhhhhhh
Q 003217 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAK 605 (838)
Q Consensus 528 ~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~-~~~~~~~~~~~~~ 605 (838)
++|+++++..++..++.+|+....++|+++||||++..| +++|.+||... ...||||||||||+ +++++.+..
T Consensus 1 ~~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~---- 75 (347)
T 1i9z_A 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS---- 75 (347)
T ss_dssp CCHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C----
T ss_pred CCchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc----
Confidence 578899999999999999999999999999999998877 56799999853 35789999999998 576653321
Q ss_pred hhccCCCCcchhhHHHHHhhhcC----CCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeE
Q 003217 606 ETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVG 681 (838)
Q Consensus 606 ~~~~~~~~~~~~~w~~~~~~~l~----~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 681 (838)
..+...+.|.+.|.++|+ .+..|.++.+.+|+|++|+||+|.++.++|++|+++.++||++|.+||||||+
T Consensus 76 -----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~ 150 (347)
T 1i9z_A 76 -----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVA 150 (347)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEE
T ss_pred -----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEE
Confidence 122345789999999996 35789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCc
Q 003217 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761 (838)
Q Consensus 682 i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (838)
+||.+++++||||||||+||++++++||+||+.|++.|.|.+.. .+.+
T Consensus 151 vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~--------------------------------~i~~ 198 (347)
T 1i9z_A 151 IRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR--------------------------------SIFN 198 (347)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC--------------------------------CTTS
T ss_pred EEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCccc--------------------------------cccc
Confidence 99999999999999999999999999999999999999886421 2467
Q ss_pred ccEEEEeccceeeecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccCC
Q 003217 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGT 837 (838)
Q Consensus 762 ~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~~ 837 (838)
+|++||||||||||+. +.++++++|++++|+.|+++|||+++|++|++|.||+|++|+|+|||||++++++|..+
T Consensus 199 ~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s 273 (347)
T 1i9z_A 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTS 273 (347)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCS
T ss_pred CccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcccccc
Confidence 8999999999999996 99999999999999999999999999999999999999999999999999999988654
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.2e-57 Score=496.31 Aligned_cols=250 Identities=23% Similarity=0.384 Sum_probs=217.9
Q ss_pred cccccccceeeEEEEEEeCCCCCCcccccccccCC--CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHH
Q 003217 544 FLYTRMENLKILAGTWNVGQGRASQDALISWLGSA--ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (838)
Q Consensus 544 ~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~--~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (838)
..|+...+++|+++||||++.++.+++|.+||... ...+|||||||||++.. .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 44777888999999999998777678999999642 34689999999998641 267999
Q ss_pred HHhhhcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCC
Q 003217 622 MIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (838)
Q Consensus 622 ~~~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~ 701 (838)
.|.++|+ ..|+++.+.+|+|++|+||+|+++.++|++|+++.|+||++|.+||||||+|||.+++++||||||||+||
T Consensus 78 ~l~~~L~--~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLG--PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHC--TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhC--CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 9999995 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChH
Q 003217 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD 781 (838)
Q Consensus 702 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~ 781 (838)
++++++||+||.+|++.|.|.+.....++ .. ......+.++|+|||+|||||||++ +++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~----------~~----------~~~~~~~~~~d~vfw~GDlNyRi~~-~~~ 214 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTNP----------YR----------SSAADVTTRFDEVFWFGDFNFRLSG-GRT 214 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSSG----------GG----------CBTTBGGGSSSEEEEEEECCCCBSS-CHH
T ss_pred CchHHHHHHHHHHHHHHhccccccccccc----------cc----------ccccccccccceEEEecccCccccc-chH
Confidence 99999999999999999999753221000 00 0011124578999999999999997 889
Q ss_pred HHHHHhh---hcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccC
Q 003217 782 EARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836 (838)
Q Consensus 782 ~~~~~i~---~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~ 836 (838)
+++++++ +++|+.|+++|||+++|++|++|.||+|++|+|||||||++|+++|..
T Consensus 215 ~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt 272 (357)
T 2xsw_A 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDS 272 (357)
T ss_dssp HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCC
T ss_pred HHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccc
Confidence 9999986 578999999999999999999999999999999999999999998863
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=4.2e-45 Score=393.00 Aligned_cols=228 Identities=18% Similarity=0.308 Sum_probs=198.0
Q ss_pred ccceeeEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhc
Q 003217 549 MENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (838)
Q Consensus 549 ~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 627 (838)
...++|+++||||++..| +++|.+|+... ..+||||||||||+.+.... ....+.|.+.|.+.|
T Consensus 4 ~~~~~i~V~T~Nv~~~~~-~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERA-PTNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLL 68 (282)
T ss_dssp CSEEEEEEEEEEEETCCC-CSCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCcC-chhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHhc
Confidence 345789999999987766 46789999853 36789999999999864321 123578999999999
Q ss_pred CCCCCEEEEee--eecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchH
Q 003217 628 DDGSTFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (838)
Q Consensus 628 ~~~~~y~~v~s--~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (838)
+ ...|..+++ .+|.|++|+||+|.++.+.|+++++ +|+.+.+||||+|++||.+++++||||||||+|+++++
T Consensus 69 ~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 69 T-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp H-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT
T ss_pred C-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH
Confidence 5 457999999 8899999999999999888888765 45566789999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003217 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (838)
++|+++++.|++.+.+ +.++|++||+||||||++. +.+++++
T Consensus 144 ~~R~~~~~~I~~~~~~-------------------------------------~~~~~~vi~~GDfN~r~~~-~~~~~~~ 185 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKK-------------------------------------DDPSDFLFWIGDLNVRVET-NATHAKS 185 (282)
T ss_dssp TSSSSSCCGGGCTTSS-------------------------------------SSCCSEEEEEEECSCCBCS-CHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-------------------------------------cCccceEEEecccccccCC-CHHHHHH
Confidence 9999999999876532 2357899999999999997 8899999
Q ss_pred HhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCcc
Q 003217 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835 (838)
Q Consensus 786 ~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~ 835 (838)
+|++++|+.|+++|||+++|+ |.+|.||+|++|+|+|||||+.++++|.
T Consensus 186 ~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~ 234 (282)
T 2imq_X 186 LVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYD 234 (282)
T ss_dssp HHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBC
T ss_pred HHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCcccc
Confidence 999999999999999999999 9999999999999999999999998774
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-34 Score=325.29 Aligned_cols=267 Identities=18% Similarity=0.221 Sum_probs=221.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++.+|+||+.||+|++||+.++ +...++++|.++|++|+|+|+|+ |+|||.|++|+|||+
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 889999999999999999999999999999987 56788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+.+....+. +| ...+.++++.+++..+++++ |++|++||+++++++.++
T Consensus 180 ~~~~~~~~~~-------------------~h----------~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 180 QGFECIRTMH-------------------GH----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp TSSCEEECCC-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCceeEEEc-------------------CC----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 7654332221 12 44678888888888888877 689999999999999998
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~v 422 (838)
.+|...+..+. +.+++..+++++.++..++|. ...+..|...|
T Consensus 231 ~~h~~~v~~~~-------------------------------~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 231 TGHREWVRMVR-------------------------------PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ECCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred eCCCccEEEEE-------------------------------ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 87765433322 223333445566666656554 12345677888
Q ss_pred EEEEEcCC--------------------C-cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeC
Q 003217 423 EALTTSID--------------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~d--------------------g-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~D 478 (838)
.+++++|+ | .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 359 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC
Confidence 89999885 3 4899999999999999 78999999999999999876 68899999999
Q ss_pred CeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
++|++||+. ++++.++.+|.+.|+++++ ++.+++|||.|++||+|++
T Consensus 360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999987 7889999999999999986 6778999999999999986
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=314.32 Aligned_cols=287 Identities=14% Similarity=0.056 Sum_probs=206.3
Q ss_pred ceeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.+++.. +..|.+++|.++|+||......... . .+...........+ ..+|.|++|+|++ .|++|+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~-----~---~~~~~~~~~~~~~~-~~~v~~~~~s~d~-~l~~~s 100 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP-----C---AAPNEGFCSAGVQT-EAGVADLTWVGER-GILVAS 100 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG-----G---GTTCGGGCSEEEEE-SSCEEEEEEETTT-EEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc-----c---ccCCcceeeeeecc-CCCEEEEEEeCCC-eEEEEE
Confidence 457777765 3455567799999998421100000 0 00000000111112 5689999999984 688999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+||+||+.++. ........+.+|.+.|++|+|+|+|+ |+||+.|++||+||+.+++....+.
T Consensus 101 ~dg~v~lWd~~~~~----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~---------- 166 (344)
T 4gqb_B 101 DSGAVELWELDENE----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR---------- 166 (344)
T ss_dssp TTSEEEEEEECTTS----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------
T ss_pred CCCEEEEEeccCCC----ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc----------
Confidence 99999999999862 11112234569999999999999998 7899999999999998754332221
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+| ...|.++++.+++. .+++++ |++|++||+++++++..+..+
T Consensus 167 ---------~h----------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------- 211 (344)
T 4gqb_B 167 ---------AH----------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------------- 211 (344)
T ss_dssp ---------CC----------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------
T ss_pred ---------Cc----------CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----------------
Confidence 22 45678888877664 566666 689999999998875544211
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-Cc-EEEEECCCeEEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GM-IWTGGANGLLLQW 445 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-g~-l~Sgs~DgtIrlW 445 (838)
.+...+.+++++|+ +. +++|+.|++|++|
T Consensus 212 -------------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 212 -------------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ---------------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 11123456777774 44 6899999999999
Q ss_pred cC-CCCeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe--CCC-EEEEEcCCC
Q 003217 446 DP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAG-YIFTLANHG 518 (838)
Q Consensus 446 D~-~g~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~-~l~S~S~Dg 518 (838)
|+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++...+..+.+|.+.|++|++ +++ .++|+|.|+
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99 78999999999999999976 56 4799999999999999985555568899999999986 554 577999999
Q ss_pred CeeeeecCC
Q 003217 519 GIRGWNVTS 527 (838)
Q Consensus 519 tIrlWdl~s 527 (838)
+|++|++..
T Consensus 323 ~v~~w~v~~ 331 (344)
T 4gqb_B 323 QVVHHVVPT 331 (344)
T ss_dssp CEEEEECCC
T ss_pred eEEEEECCC
Confidence 999999865
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.7e-33 Score=331.83 Aligned_cols=362 Identities=16% Similarity=0.179 Sum_probs=221.2
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 134 ~~~~l~~~~~---~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.+.+++...+ .|.+ +.|++|++||..+..... .+. .| ..+|.|++|+|+|++|+||
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-----------------~l~--~H-~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-----------------TFG--EH-TKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-----------------EEC--CC-SSCEEEEEECTTSSEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-----------------eec--cc-cCceEEEEECCCCCEEEEE
Confidence 4556665533 3555 569999999986533211 111 23 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEec-------cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~-------gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
+.|++|++||+.++ +....+. +|.+.|++|+|+|||+ |+|||.|++|||||+.+++....+...
T Consensus 209 s~D~~i~lwd~~~g--------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 209 GGDGTIVLYNGVDG--------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp ETTSCEEEEETTTC--------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCcEEEEECCCC--------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99999999999887 4555663 8999999999999998 789999999999999875543322111
Q ss_pred ---ce----------eeeEEEEeec--eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEE
Q 003217 282 ---ER----------HTAALIVERS--YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (838)
Q Consensus 282 ---~~----------~~~~~~~~~s--~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l 345 (838)
.. ...+...+.. +++.... .......-+...+.++++++++..+++++ |++|++||+.++++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 00 0010000000 0011000 00000011356789999999999999887 689999999999887
Q ss_pred EEE-ecCCceEEeeecccCcc---cccccceeeEEEecCC----------------------------------------
Q 003217 346 KVF-NIDGQIENRVDMSLLPD---FAMEDEFKTKIVTSSK---------------------------------------- 381 (838)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~s~~~---------------------------------------- 381 (838)
..+ ..|...+..+.+++... ...+..++++......
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 665 33444334444432211 0112222211110000
Q ss_pred -------CCcceeeeeEeecCcceeeecCCcEEEEec--cCcc-----ccCCCceEEEEEcCCCc-EEEEECCCeEEEEc
Q 003217 382 -------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF-----GDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (838)
Q Consensus 382 -------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~-----~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD 446 (838)
......++.|.+++..+++|..++..++|. .+.+ ..|...|.+++|+|||+ |++++.|++|++||
T Consensus 440 ~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 440 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 001123455666666666666666655554 1111 24556677777777766 56777777777777
Q ss_pred C-C-CCeeeE--eecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cc-cc-cccccc-ccCEEEEEe--CCCEEEEE
Q 003217 447 P-N-GNRLQD--FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN-LL-GGWVAH-SSPVIKMAV--GAGYIFTL 514 (838)
Q Consensus 447 ~-~-g~~l~t--l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~-~i-~~l~gH-~~~V~sla~--dg~~l~S~ 514 (838)
+ + ++++.+ +.+|...|+++++ ||++|++|+.|++|+|||++ +. ++ ..+.+| .+.|+++++ +++ |+|+
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~ 598 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSA 598 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEE
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEe
Confidence 6 3 444443 2337777776654 56677777777777777765 22 33 556677 677777663 454 7777
Q ss_pred cCCCCeeeeec
Q 003217 515 ANHGGIRGWNV 525 (838)
Q Consensus 515 S~DgtIrlWdl 525 (838)
|.|++||+|++
T Consensus 599 ~~D~~i~lW~~ 609 (611)
T 1nr0_A 599 GQDSNIKFWNV 609 (611)
T ss_dssp ETTSCEEEEEC
T ss_pred cCCCCEEEEec
Confidence 77777777765
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-32 Score=321.14 Aligned_cols=330 Identities=18% Similarity=0.238 Sum_probs=257.3
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+++++.. +..|.+ +.|+.|++||... .... .+ ..+ ..+|.+++|+|++++|++|+
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~-----------------~~--~~~-~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ-----------------TL--TGH-SSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEE-----------------EE--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEE-----------------EE--ecC-CCCEEEEEEcCCCCEEEEEe
Confidence 35566654 345555 5689999999642 1110 11 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++|+... +....+.+|.+.|++++|+|+++ |++++.|++|++||..+.. ...+
T Consensus 282 ~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~----------- 340 (577)
T 2ymu_A 282 DDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL----------- 340 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE-----------
T ss_pred CCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE-----------
Confidence 999999999765 46778899999999999999998 7899999999999985421 1111
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.++ ...+.++++++++..+++++ +++|++||. +++++..+..|...+..+.+++.....+
T Consensus 341 --------~~~----------~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 341 --------TGH----------SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp --------CCC----------SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --------eCC----------CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 111 44677888888888888876 578999995 6788888888877666777776544322
Q ss_pred --ccceeeEEEecC--------CCCcceeeeeEeecCcceeeecCCcEEEEec-cC----ccccCCCceEEEEEcCCCc-
Q 003217 369 --EDEFKTKIVTSS--------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDNRRTEALTTSIDGM- 432 (838)
Q Consensus 369 --~~~~~~~~~s~~--------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~~~v~ala~S~dg~- 432 (838)
..+-.++++... .....+..+.|.+++..++++..++..+++. .+ .+..|...|.+++|+||++
T Consensus 402 ~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp EEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred EEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence 111122232211 1223345677888888888888888777775 22 3456788999999999998
Q ss_pred EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe--CC
Q 003217 433 IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GA 508 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg 508 (838)
|++++.|++|++||.+|++++++.+|...|+++++ +|++|++|+.||+|+|||.+++++.++.+|.+.|++|++ |+
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 78999999999999999999999999999999875 789999999999999999989999999999999999984 78
Q ss_pred CEEEEEcCCCCeeeee
Q 003217 509 GYIFTLANHGGIRGWN 524 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWd 524 (838)
++|+|+|.|++|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999997
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=304.14 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=215.5
Q ss_pred CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 143 ~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
..|.+ +.|++|||||+.+..... .+....| ..+|.|+++++++.+++||+.|++|++||+.
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~-----------------~~~l~gh-~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDL-----------------QWSLEGH-QLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEE-----------------EEEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCCEEEEECCCCCeee-----------------eeeeccC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 35665 569999999986432110 0111223 7899999999999999999999999999999
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|+++++.....+.. +
T Consensus 111 ~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------------~ 163 (321)
T 3ow8_A 111 NG--------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-------------------R 163 (321)
T ss_dssp TT--------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-------------------S
T ss_pred CC--------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-------------------C
Confidence 87 67788899999999999999998 78999999999999977554332211 1
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
...+.++++++++..+++++ +++|++||+++++++.++.+|
T Consensus 164 ----------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h---------------------------- 205 (321)
T 3ow8_A 164 ----------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH---------------------------- 205 (321)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC----------------------------
T ss_pred ----------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc----------------------------
Confidence 33577888888898888877 678999999998876655332
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~ 457 (838)
...|.+++|+|++. |++|+.|++|++||+ +++++.++.+
T Consensus 206 ---------------------------------------~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 206 ---------------------------------------AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp ---------------------------------------SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred ---------------------------------------CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 22345678899987 789999999999999 6899999999
Q ss_pred CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 458 LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 458 H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|...|.++++ +|++|++|+.|++|+|||+. ++++.++.+|.+.|+++++ ++++|+|++.|++|++||+
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999876 68899999999999999997 7889999999999999986 6789999999999999995
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-32 Score=324.79 Aligned_cols=359 Identities=13% Similarity=0.102 Sum_probs=210.8
Q ss_pred ecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 140 CTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 140 ~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
.+++.|..+.+++|++||+.+..... .+. .| ..+|.|++|+|+|++||||+.||+||+||
T Consensus 28 pdg~~l~~~~~~~v~l~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~spdg~~lasg~~d~~v~lWd 87 (611)
T 1nr0_A 28 PAGDKIQYCNGTSVYTVPVGSLTDTE-----------------IYT--EH-SHQTTVAKTSPSGYYCASGDVHGNVRIWD 87 (611)
T ss_dssp TTSSEEEEEETTEEEEEETTCSSCCE-----------------EEC--CC-SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEeCCCCEEEEecCCCcccCe-----------------Eec--CC-CCceEEEEECCCCcEEEEEeCCCCEEEeE
Confidence 34557777778899999997543221 122 34 77999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC----CcEEEEECCCcceeeecCCCceeeeEEEE----
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIV---- 290 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~---- 290 (838)
+.++. ......+.+|.++|.+|+|+|||+ |++++.| ++|++||... ....+..+...+..+..
T Consensus 88 ~~~~~------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 88 TTQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp SSSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSS
T ss_pred CCCCc------ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--CcceecCCCCCceEEEECCCC
Confidence 97542 023445677777777777777776 5565544 3566666422 11111111111111111
Q ss_pred ---------eece--eecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe-------cC
Q 003217 291 ---------ERSY--IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-------ID 351 (838)
Q Consensus 291 ---------~~s~--~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~-------~~ 351 (838)
+... ++.... .......-+...|.++++++++..+++++ |++|++||+.+++++.++. +|
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred CeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 1111 110000 00000011255789999999999988877 6899999999999988884 56
Q ss_pred CceEEeeecccCcccc----cccceeeEEEecC-----------------------------------------------
Q 003217 352 GQIENRVDMSLLPDFA----MEDEFKTKIVTSS----------------------------------------------- 380 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~----~~~~~~~~~~s~~----------------------------------------------- 380 (838)
...+..+.+++..... .+..+++|.+...
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 6656677777654322 2333333321110
Q ss_pred ---CCCcceeeeeEeecCcceeeecCCcEEEEec--cCc----c-ccCC-------------------------------
Q 003217 381 ---KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----F-GDDN------------------------------- 419 (838)
Q Consensus 381 ---~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~-~~~~------------------------------- 419 (838)
.+...+..+.|.+++..++++..++..++|. .+. + ..|.
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS 398 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCc
Confidence 0112233556666666666666666555553 110 0 0111
Q ss_pred --------------------------------------------------CceEEEEEcCCCc-EEEEECCCeEEEEcCC
Q 003217 420 --------------------------------------------------RRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (838)
Q Consensus 420 --------------------------------------------------~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~ 448 (838)
..+.+++++|||+ |++|+.|++|++||+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~ 478 (611)
T 1nr0_A 399 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 478 (611)
T ss_dssp SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred cccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEcc
Confidence 2244566666665 5666677777777763
Q ss_pred C-Ce--eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--Cccccc--ccccccCEEEEEe--CCCEEEEEcCC
Q 003217 449 G-NR--LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGG--WVAHSSPVIKMAV--GAGYIFTLANH 517 (838)
Q Consensus 449 g-~~--l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~--l~gH~~~V~sla~--dg~~l~S~S~D 517 (838)
+ +. +++ .+|...|+++++ +|++|++|+.|++|++||+. ++++.. +.+|...|+++++ ||++|+|+|.|
T Consensus 479 ~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 479 GASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp TTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECC
Confidence 3 21 233 456667776654 56677777777777777764 334332 3447777777663 56667777777
Q ss_pred CCeeeeecCCC
Q 003217 518 GGIRGWNVTSP 528 (838)
Q Consensus 518 gtIrlWdl~s~ 528 (838)
++||+|++..+
T Consensus 558 ~~v~lW~~~~~ 568 (611)
T 1nr0_A 558 NSVIVWNMNKP 568 (611)
T ss_dssp SCEEEEETTCT
T ss_pred CcEEEEECCCc
Confidence 77777776543
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-32 Score=307.68 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=217.9
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCC-CCCCCcee--eecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKE--SVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~--~~~g~~~V~~la~s~dg~~LaS 208 (838)
.+.+++.+ +..|.++.++++++|++.+...... +...... .....+.. ...+...|.|++|+|+|++|++
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-----LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-----ECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEE-----ecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 34455554 5577778899999999976543211 0000000 00000000 0001345999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
|+.||+|++||+.++ +....+.+|...|++++|+|+|+ |+||+.|++|++||+.+++....+..
T Consensus 141 ~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------- 205 (393)
T 1erj_A 141 GAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI------- 205 (393)
T ss_dssp EETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------
T ss_pred EcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-------
Confidence 999999999999987 67788999999999999999998 78999999999999977543322210
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
...+..+++.+ ++..+++++ +++|++||+++++++..+.....
T Consensus 206 -----------------------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~------------ 250 (393)
T 1erj_A 206 -----------------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------------ 250 (393)
T ss_dssp -----------------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred -----------------------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc------------
Confidence 23466677766 667777776 68999999999887655421000
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEE
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrl 444 (838)
...+|...|.+++|+|+|. |++|+.|++|++
T Consensus 251 ------------------------------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 251 ------------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp --------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 0123556678899999997 899999999999
Q ss_pred EcC-C------------CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--
Q 003217 445 WDP-N------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 445 WD~-~------------g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (838)
||+ + +.+..++.+|...|.++++ ++++|++|+.|++|++||++ ++++..+.+|.+.|.++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 998 3 3467788899999999876 68899999999999999987 7889999999999999985
Q ss_pred ------CCCEEEEEcCCCCeeeeecCCC
Q 003217 507 ------GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 507 ------dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++++++|||.|++||+|++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 3578999999999999997643
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-32 Score=304.75 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=206.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHR------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~------DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtI 264 (838)
...|.||+|+|||++|+||+. |++|++|+..++. ..........+|...|++|+|+|++++++++.||+|
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA----PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC----cceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 778999999999999999998 7889999987762 112233455789999999999999999999999999
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
||||+.+++....... ...+| ...|.++++++++..+++++ +++|++||+++++
T Consensus 118 ~lWd~~~~~~~~~~~~---------------~~~~h----------~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 118 ELWEILEKESLLVNKF---------------AKYEH----------DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp EEC--------CCCCE---------------EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred EEeeccccceeEEEee---------------ccCCC----------CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999976543211100 00112 45688999999999888887 6789999999999
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC------cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG------GF 415 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g------~~ 415 (838)
++..+..|...+..+.+++... ...+.+..++..++|. .+ .+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~------------------------------~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKD------------------------------TIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCS------------------------------SCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred EEEEEcCCCCCEEEEEEccCCC------------------------------ceeeeeccCCceEEEECCCCceeeeeee
Confidence 9998887665444433332211 1234455555555553 11 12
Q ss_pred ccCCCceEEEEEcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC-C
Q 003217 416 GDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g 488 (838)
..+...+.+++++|++ . +++|+.|++|++||+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++ +
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 2355678899999874 3 788999999999999 78999999999999999976 55 589999999999999998 5
Q ss_pred cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 489 NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 489 ~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
++++. .+|.+.|++|++ |+++|+|+|.|++|++|++.+......++
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 55554 489999999985 57899999999999999997755544443
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.5e-32 Score=296.33 Aligned_cols=270 Identities=18% Similarity=0.214 Sum_probs=212.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 779999999999999999999999999999887 56778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+.+..... .. .+.+| ...+.++.+.+++..+.++.+++|++||+.+++++.++.
T Consensus 127 ~~~~~~~~~------~~---------~~~~h----------~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 127 KTREGNVRV------SR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCSBSCEE------EE---------EEECC----------SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccCCCccee------EE---------EecCC----------CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc
Confidence 764321110 00 01112 345667777665554444557899999999999988887
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (838)
+|...+..+ .+.+++...++|..++..++|. . ..+..|...|.
T Consensus 182 ~h~~~v~~~-------------------------------~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 182 GHTGDVMSL-------------------------------SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp CCSSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCCceEEE-------------------------------EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEE
Confidence 665433333 3333344455666666666654 1 23556888899
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec--CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
+++++|++. +++|+.|++|++||+ +++.+.++.. +...|.++++ +|++|++|+.|++|++||+. ++.+..+.+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 999999987 899999999999999 6777777653 3357888865 68999999999999999986 778899999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
|.+.|.++++ ++++++|+|.|++|++||
T Consensus 311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999985 788999999999999997
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-31 Score=306.89 Aligned_cols=358 Identities=16% Similarity=0.180 Sum_probs=260.4
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+++|+.+ ++.|.+ +.|++|+|||.. ..... .+. .| .++|.||+|+|+|++|+||+
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~-~~~~~-----------------~l~--gh-~~~V~~l~fspdg~~las~~ 76 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-----------------TLT--GH-SSSVWGVAFSPDGQTIASAS 76 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE-----------------EEE--CC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEE-----------------EEe--CC-CCCEEEEEECCCCCEEEEEe
Confidence 46667665 345555 568899999953 22111 122 23 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++||..+ +.+..+.+|.++|++|+|+|||+ |++++.|+++++|+....... ...........+.
T Consensus 77 ~d~~i~vWd~~~---------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 146 (577)
T 2ymu_A 77 DDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVA 146 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE-EECCCSSCEEEEE
T ss_pred CCCEEEEEECCC---------CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee-eccCCCCceeeee
Confidence 999999999754 56788999999999999999998 789999999999997653211 1111111111111
Q ss_pred Eee------------ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEE
Q 003217 290 VER------------SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (838)
Q Consensus 290 ~~~------------s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (838)
... .....................+..++..+++..+++++ +++|++||. +++++..+..|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 225 (577)
T 2ymu_A 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 225 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred eecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEE
Confidence 100 00000000000001112345678888888888888776 678999995 5778888888776666
Q ss_pred eeecccCccccc----ccceeeEEEecC--------CCCcceeeeeEeecCcceeeecCCcEEEEec-cC----ccccCC
Q 003217 357 RVDMSLLPDFAM----EDEFKTKIVTSS--------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDN 419 (838)
Q Consensus 357 ~~~~s~~~~~~~----~~~~~~~~~s~~--------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~ 419 (838)
.+.+++.....+ +..++ ++... .....+..+.|.+++..++++..++..+++. .+ .+.+|.
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~--~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~ 303 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 303 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCS
T ss_pred EEEECCCCCEEEEEeCCCEEE--EEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCC
Confidence 666666543321 22233 22211 1233345677888888888888888777765 22 345688
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVA 496 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~g 496 (838)
..|.+++++|++. +++++.|++|++||.+++.+..+.+|...|.++++ +|++|++|+.|++|++||.+++++..+.+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~ 383 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC
Confidence 8999999999987 78999999999999999899999999999999865 68899999999999999998999999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|...|.++++ |++++++++.|++|++|+.
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 9999999985 7889999999999999995
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.2e-31 Score=283.42 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=210.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|++++|+||+.||+|++||+.++ .....+++|..+|.+++|+|+++ |++||.|++||+||+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 779999999999999999999999999999987 67788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc-cEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg-~~l~~ 347 (838)
.+++....+. +| ...+.++++++++..+++++ |++|++||++++ .+..+
T Consensus 85 ~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CCCcEEEEEe-------------------CC----------CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 8765433221 12 45688899998888888887 689999999987 44456
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC------cc-ccCCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF-GDDNR 420 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~-~~~~~ 420 (838)
+.+|...+..+.+++. .+...++|..|+..++|... .+ ..+..
T Consensus 136 ~~~h~~~v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (304)
T ss_dssp ECCCCSCEEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred hcccCCcEEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcC
Confidence 6666554333333321 12334556666666665411 11 13445
Q ss_pred ceEEEEEcC--CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 421 RTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 421 ~v~ala~S~--dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
.+..+.+++ ++. |++|+.|++|++||+ +++++.++.+|...|.++++ ++++|++|+.||+|+|||++ ++++++
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 677788765 554 899999999999999 78999999999999998865 67899999999999999987 788999
Q ss_pred ccccccCEEEEEe--CCC--EEEEEcCCCCeeeeecCC
Q 003217 494 WVAHSSPVIKMAV--GAG--YIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 494 l~gH~~~V~sla~--dg~--~l~S~S~DgtIrlWdl~s 527 (838)
+.+|...|+++++ ++. ++++++. .++.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~ 302 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLGN 302 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC-
T ss_pred ccCCCccEEEEEECCCCCceEEEEecC-CceEEEEecc
Confidence 9999999999984 343 4666664 5577888653
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=285.61 Aligned_cols=285 Identities=12% Similarity=0.125 Sum_probs=200.1
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+.+++.+.+.|.+ +.|++|++||+........ ..+....| ..+|.|++|+|++++|++|+.|
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~---------------~~~~~~~h-~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI---------------DVLDETAH-KKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE---------------EEECTTCC-CSCEEEEEECTTSSEEEEEETT
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE---------------EEEecCCc-cCCEEEEEECCCCCEEEEEeCC
Confidence 56677777776655 5699999999965311000 00101113 7799999999999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
++|++|++..... .....+....+.+|.++|++|+|+|+|+ |+|||.|++|++||+....... ....
T Consensus 80 ~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------~~~~----- 147 (330)
T 2hes_X 80 STVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------ECIS----- 147 (330)
T ss_dssp SCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------EEEE-----
T ss_pred CcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------EEEE-----
Confidence 9999999864210 0011245667899999999999999998 7999999999999984321100 0000
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc--EEEEEecCCceEEeeecccCccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~--~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.+.+| ...+.++++++++..|++++ |++|++||..++. ++.++
T Consensus 148 ----~~~~h----------~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-------------------- 193 (330)
T 2hes_X 148 ----VLQEH----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-------------------- 193 (330)
T ss_dssp ----EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------------
T ss_pred ----EeccC----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc--------------------
Confidence 01122 45688899998888888887 6899999987652 22222
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC--Cc-EEEEECCCeEEEE
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GM-IWTGGANGLLLQW 445 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d--g~-l~Sgs~DgtIrlW 445 (838)
.+|...|.+++|+|+ +. |++|+.|++|++|
T Consensus 194 -----------------------------------------------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 194 -----------------------------------------------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp -----------------------------------------------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred -----------------------------------------------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 233445667788887 54 8999999999999
Q ss_pred cC-CC--------CeeeEeec-CCccEEEEEEc-CCEEEEEeeCCeEEEEeCC-C--ccc-cccccccc-CEEEEEe---
Q 003217 446 DP-NG--------NRLQDFQY-LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-G--NLL-GGWVAHSS-PVIKMAV--- 506 (838)
Q Consensus 446 D~-~g--------~~l~tl~~-H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g--~~i-~~l~gH~~-~V~sla~--- 506 (838)
|+ .+ .++..+.+ |...|+++++. +.+|++|+.||+|+|||.. + +++ ..+.+|.. .|.++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 98 33 45566665 99999999874 5689999999999999986 4 233 34578987 8999985
Q ss_pred -CCCEEEEEcCCCCeeeeecCC
Q 003217 507 -GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 -dg~~l~S~S~DgtIrlWdl~s 527 (838)
++++|+|+|.|++|++|++..
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 467899999999999999754
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-30 Score=288.73 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=213.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+|++|+|++++|+||+.||+|++||..++ +....+..|...|.+++|+|+|. |++|+.|++|++|++
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 789999999999999999999999999999886 56677888999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
......... . .... +. .+...+.++.+.+++..+++++ |++|++||+.+++++.++
T Consensus 136 ~~~~~~~~~--~--~~~~---------~~----------~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 136 TFDKNENMA--A--KKKS---------VA----------MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CCCTTCCSG--G--GCEE---------EE----------ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ecccccccc--c--ccee---------ee----------ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 542110000 0 0000 01 1245678888888888887776 689999999999999999
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v 422 (838)
.+|...+..+.+.+.. .+...++|..++..++|. .+ .+..|...|
T Consensus 193 ~~h~~~v~~~~~~~~~-----------------------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v 243 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSE-----------------------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243 (354)
T ss_dssp ECCSSCEEEEEECCCS-----------------------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred cCCCCCeEEEEEEeCC-----------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe
Confidence 8776543333332211 122345566666555554 11 345678889
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC--CccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H--~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
.+++++|++. +++|+.|++|++||+ .++++..+..+ ...+.++++ +|++|++|+.|++|+|||+. ++.+..+.
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence 9999999987 899999999999999 56677666543 346777765 68999999999999999985 78889999
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|.+.|.++++ |+++|+|+|.|++|++|+
T Consensus 324 ~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999985 788999999999999996
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-30 Score=292.74 Aligned_cols=286 Identities=15% Similarity=0.173 Sum_probs=217.8
Q ss_pred ceeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~--~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+++.+. ..|.+ +.|++|+|||+.+...... + ..| ..+|.|++|+|++++|+||
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~-----------------l--~~h-~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-----------------L--KGH-TDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------E--ecc-CCcEEEEEEcCCCCEEEEE
Confidence 3566777653 35555 5699999999976543211 1 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.||+|++||+.++ +.+.++.+|...|++++|+|+|. |+|||.|++|++||+.++.....+.
T Consensus 169 s~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------- 231 (410)
T 1vyh_C 169 SADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------- 231 (410)
T ss_dssp ETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred eCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------
Confidence 99999999999886 67788999999999999999998 7899999999999997754332221
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+| ...+.++...+++..+++++ |++|++||+.++++...+..|...+..+.+++.....
T Consensus 232 ----------~h----------~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 232 ----------GH----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ----------CC----------CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 12 34577788888888888877 6899999999999999998887766666666543221
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCc-EEEEECCC
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
..... ... . .......+..+++|+.++..++|. .+ .+.+|...|.+++++|+|. |++|+.|+
T Consensus 292 ~~~~~-----~~~---~---~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 292 SISEA-----TGS---E---TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp GGGGC-----CSC---C----------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred chhhh-----ccc---c---ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 10000 000 0 001111234567788888777775 22 3556888999999999987 89999999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (838)
+|++||. ++++++++.+|...|+++++ ++.+|++|+.|++|++||.
T Consensus 361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 78999999999999999976 6789999999999999986
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-31 Score=298.96 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=207.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+|++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 789999999999999999999999999999987 67788999999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
.+....-...... ..+.+| ...+..+.+.+. +..+++++ |++|++||+.+++++.+
T Consensus 138 ~~~~~~~~~~~~~------------~~~~gh----------~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 138 SSQADRDGNMPVS------------RVLTGH----------KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCCSSCCCSSTTC------------CBCCCC----------SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCccccCCccce------------eeccCC----------CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 6532100000000 001122 222333444443 34566665 68999999999999877
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEecc-------CccccCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK-------GGFGDDN 419 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~-------g~~~~~~ 419 (838)
+...... .+...+.++.+.+ ++...++|+.|+..++|.. ..+.+|.
T Consensus 196 ~~~~~~~--------------------------~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 196 FGSEFPS--------------------------GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249 (380)
T ss_dssp ECCCSSS--------------------------SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred eecccCC--------------------------CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence 7321000 0000111222222 2334566777777777651 1345688
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc-------cEEEEEE--cCCEEEEEeeCCeEEEEeCC-
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLCT--FGSQIWVGYMNGIVQVLDLE- 487 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-------~V~sls~--dG~~LasGs~DgtIrlWD~~- 487 (838)
..|.+++++|+|. +++|+.|++|++||+ ++++++.+..|.. .|+++++ +|++|++|+.||+|++||+.
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 8999999999987 899999999999999 7888888876432 3677654 79999999999999999986
Q ss_pred Ccccccc----cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 488 GNLLGGW----VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 488 g~~i~~l----~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++.+..+ .+|.+.|.++++ +|++|+|||.|++|++|++...
T Consensus 330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 6655554 789999999884 7889999999999999998653
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=2.8e-30 Score=278.84 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=212.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|++++|++|+.||+|++|++.++ +....+.+|...|++++|+|+|+ |++|+.|++|++||+
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 789999999999999999999999999999886 56778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+.+....+. +| ...+.++.+.+++..+++++ +++|++||+++++++..+
T Consensus 95 ~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 95 SSGKCLKTLK-------------------GH----------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEEc-------------------CC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 7654322211 12 34577888888888888877 679999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Cc----c-ccCCCc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG----F-GDDNRR 421 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~----~-~~~~~~ 421 (838)
..|...+..+ .+.+++...+++..++..+++.. +. + ..+...
T Consensus 146 ~~~~~~v~~~-------------------------------~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 146 PAHSDPVSAV-------------------------------HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp CCCSSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred cCCCCcEEEE-------------------------------EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 7655433222 23333344455566665555541 11 1 234557
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE----E-EcCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL----C-TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl----s-~dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
+..++++|++. +++++.|++|++||+ ++++++.+.+|...+.++ . .++.+|++|+.||+|++||+. ++++..
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 88899999987 789999999999999 789999999987754432 2 357899999999999999997 678999
Q ss_pred ccccccCEEEEEe--CCCEEEEEc--CCCCeeeeecC
Q 003217 494 WVAHSSPVIKMAV--GAGYIFTLA--NHGGIRGWNVT 526 (838)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S--~DgtIrlWdl~ 526 (838)
+.+|.+.|.++++ ++..+++++ .|++|++|+..
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999985 677899886 69999999853
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.98 E-value=2.6e-30 Score=284.84 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=204.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee-EEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+.|.+++|+|+|++|+||+.|++||+||+.++. .... ....+|.+.|++|+|+|+|+ |+|||.|++|+||++
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTE------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 389999999999999999999999999998751 0111 22479999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc---EE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE---LL 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~---~l 345 (838)
.+..... .. .+.+| ...|.++++++++..+++++ |++|++||+.++. ++
T Consensus 91 ~~~~~~~--------~~---------~~~~h----------~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 91 NQDDFEC--------VT---------TLEGH----------ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp CCC-EEE--------EE---------EECCC----------SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCeEE--------EE---------EccCC----------CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence 6532110 00 11222 45688899999999998887 6899999998764 34
Q ss_pred EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c------Ccccc
Q 003217 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K------GGFGD 417 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~------g~~~~ 417 (838)
..+..|...+.. +.+.+++..++++..++..+++. . ..+.+
T Consensus 144 ~~~~~h~~~v~~-------------------------------~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~ 192 (345)
T 3fm0_A 144 SVLNSHTQDVKH-------------------------------VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192 (345)
T ss_dssp EEECCCCSCEEE-------------------------------EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred EEecCcCCCeEE-------------------------------EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC
Confidence 445444433222 33444444555666665555543 1 23557
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-C-C--------------CeeeEeec-CCccEEEEEE--cCCEEEEEee
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-G--------------NRLQDFQY-LPFAVQCLCT--FGSQIWVGYM 477 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g--------------~~l~tl~~-H~~~V~sls~--dG~~LasGs~ 477 (838)
|...|.+++|+|+|. |++|+.|++|++||. . + +++.++.+ |...|+++++ ++..|++|+.
T Consensus 193 h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 272 (345)
T 3fm0_A 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG 272 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence 888999999999997 899999999999986 2 1 34556665 8899999976 5789999999
Q ss_pred CCeEEEEeCCC-c---------ccccccccccCEEEEEeC--C-CEEEEEcCCCCeeeeecCCCCC
Q 003217 478 NGIVQVLDLEG-N---------LLGGWVAHSSPVIKMAVG--A-GYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 478 DgtIrlWD~~g-~---------~i~~l~gH~~~V~sla~d--g-~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|++|++||... . ....+.+|.+.|++|++. + ..++|+|.|++|++|++....+
T Consensus 273 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 273 DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 99999999752 1 123456899999999964 3 4899999999999999876544
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=284.40 Aligned_cols=239 Identities=17% Similarity=0.221 Sum_probs=194.9
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
..+|.||+|+|+ +++|+||+.|++||+|++.++. ......+.||..+|++++|++++. ++|||.|++||
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 789999999874 6799999999999999997752 123456899999999999999998 68999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
+||+.+++....+.. + ...+..+++++++..+++++ +++|++||+.+++.
T Consensus 106 lWd~~~~~~~~~~~~-------------------~----------~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 106 LWDLENGKQIKSIDA-------------------G----------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEETTTTEEEEEEEC-------------------C----------TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred EEECCCCCEEEEEeC-------------------C----------CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 999977543222211 1 23455677888888888887 57899999998776
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
...+.. +...+.+
T Consensus 157 ~~~~~~-------------------------------------------------------------------~~~~v~~ 169 (321)
T 3ow8_A 157 EYSLDT-------------------------------------------------------------------RGKFILS 169 (321)
T ss_dssp EEEEEC-------------------------------------------------------------------SSSCEEE
T ss_pred eEEecC-------------------------------------------------------------------CCceEEE
Confidence 443321 1123557
Q ss_pred EEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccccccc
Q 003217 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (838)
Q Consensus 425 la~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (838)
++++|+|. |++|+.|++|++||+ ++++++++.+|..+|+++++ +|++|++|+.|++|+|||+. ++++..+.+|..
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 88999987 789999999999999 78999999999999999876 68899999999999999987 678899999999
Q ss_pred CEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 500 ~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
.|.++++ ++++++|++.|++|++||+.+..++
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999985 7889999999999999998765443
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=5.2e-30 Score=279.23 Aligned_cols=277 Identities=18% Similarity=0.206 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.++|.+++|+|++ ++|+||+.|++|++|++.+.. .........+++|..+|++++|+|+|+ |+|||.|++|||||
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~---~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDD---QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEET---TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCC---ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 8899999999965 899999999999999987531 000124567899999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.+++....+. +| ...+.++++++++..+++++ |++|++||++ ++++.+
T Consensus 94 ~~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 94 VATGETYQRFV-------------------GH----------KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp TTTTEEEEEEE-------------------CC----------SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCCeeEEEc-------------------cC----------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 97754322221 12 45688888888888888887 6799999996 556677
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~ 421 (838)
+.+|...+..+.+.+.... ...+..++.+..++..++|.. ..+.+|...
T Consensus 144 ~~~h~~~v~~~~~~~~~~~-------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~ 198 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKA-------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198 (319)
T ss_dssp ECCCSSCEEEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC
T ss_pred EeccCCcEEEEEEccCCCC-------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc
Confidence 7666554433333321110 001123455666666666541 235578889
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC-ccccc---
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGG--- 493 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~--- 493 (838)
|.+++++|+|. |++|+.|++|++||+ +++++.++..| ..|.++++ +|.+|++++ +..|++|+++. .++..
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCc
Confidence 99999999997 789999999999999 68888888764 57888865 677888876 55699999874 33332
Q ss_pred -----ccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 494 -----WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 494 -----l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+|...|.++++ ||++|++++.|++|++|++.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 2356788999884 889999999999999999864
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.9e-29 Score=277.24 Aligned_cols=267 Identities=17% Similarity=0.179 Sum_probs=191.4
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+..|.+ +.|++||+||+.+...... ...+.. ...| ..+|.+++|+|++.+|+||+.|++||+||
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~-------------~~~~~~~l~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGY-------------FGIPHKALTGH-NHFVSDLALSQENCFAISSSWDKTLRLWD 104 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSB-------------SEEEEEEECCC-SSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccc-------------cccccchhccC-CCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 345655 5699999999865321110 000111 1123 78999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
+.++ +....+.+|.+.|++++|+|+|+ |+||+.|++|++||+... .........
T Consensus 105 ~~~~--------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~---------------- 159 (343)
T 2xzm_R 105 LRTG--------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKE---------------- 159 (343)
T ss_dssp TTSS--------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTT----------------
T ss_pred CCCC--------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeeccc----------------
Confidence 9987 67788999999999999999998 789999999999998632 111111000
Q ss_pred cceeccceeeeecCCeEEEEEcCCC----------CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSR----------AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~----------~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+| ...+.++++++.+ ..+++++ +++|++||. +++++.++.
T Consensus 160 ~~----------~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~------------------ 210 (343)
T 2xzm_R 160 NH----------SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK------------------ 210 (343)
T ss_dssp SC----------SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE------------------
T ss_pred CC----------CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc------------------
Confidence 01 2345566665543 4666666 678999994 333322221
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEc
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD 446 (838)
.|...|.+++++|+|. |++|+.|++|++||
T Consensus 211 -------------------------------------------------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 211 -------------------------------------------------AHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp -------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred -------------------------------------------------CccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 2334567889999987 89999999999999
Q ss_pred C-CC-CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc--cc-----------cccccCEEEEEe--
Q 003217 447 P-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG--GW-----------VAHSSPVIKMAV-- 506 (838)
Q Consensus 447 ~-~g-~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~--~l-----------~gH~~~V~sla~-- 506 (838)
+ +. .....+ .+...|.++++ ++.+++ ++.|++|++||+. ++... .+ .+|...|.++++
T Consensus 242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 9 54 344444 35667998876 566665 4568899999986 33322 33 379999999985
Q ss_pred CCCEEEEEcCCCCeeeeecCC
Q 003217 507 GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~s 527 (838)
+|++|++|+.||+||+|++.+
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEEc
Confidence 688999999999999999754
No 26
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=314.11 Aligned_cols=380 Identities=11% Similarity=0.079 Sum_probs=250.4
Q ss_pred CCCcCcccccCCCcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEecCC-EEEE-ecCCCEEEEeCCCCccc
Q 003217 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDE 164 (838)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~-g~d~~vrvWd~~~~~~~ 164 (838)
+.+..++|+.|+.+|. |+-+-.. ....+...+| ...++.++...+ .|.+ +.|++|+|||+.+....
T Consensus 25 fspdg~~lAsgs~Dg~----I~lw~~~-~~~~~~~~~~-------~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGE----VHIYGQQ-QVEVVIKLED-------RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EETTTTEEEEEETTSE----EEEECST-TCEEEEECSS-------CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred ECCCCCEEEEEeCCCE----EEEEeCC-CcEEEEEcCC-------CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence 4667788988888775 3333211 1111222122 235677776544 4555 56999999999764432
Q ss_pred cccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee----------
Q 003217 165 SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV---------- 234 (838)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~---------- 234 (838)
.. + .+ .+.|.|++|+|++++|++|+.||+|++||+.++ +..
T Consensus 93 ~~-----------------~---~~-~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~--------~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 93 TT-----------------V---FV-PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD--------QLSSFKLDNLQKS 143 (902)
T ss_dssp EE-----------------E---EC-SSCEEEEECCTTCSEEEEEETTSCEEEEETTTT--------EEEEEEECCHHHH
T ss_pred EE-----------------E---cC-CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ccccceecccccc
Confidence 11 1 13 568999999999999999999999999999886 221
Q ss_pred -EEeccccccEEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc-----e
Q 003217 235 -LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG-----F 306 (838)
Q Consensus 235 -~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~-----~ 306 (838)
..+++|.++|++|+|+|++ .|++|+.|++| +||+.+.+....+..+.. .+...+ .
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~ 206 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP----------------PFAPGGDFSEKT 206 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC----------------TTCCCSTTCCCT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC----------------CcCCCccccccc
Confidence 2357899999999999974 38899999999 999987543322221100 000000 0
Q ss_pred eeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE--Ee---cC-------------CceEEeeeccc----C
Q 003217 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV--FN---ID-------------GQIENRVDMSL----L 363 (838)
Q Consensus 307 ~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~--l~---~~-------------~~~~~~~~~s~----~ 363 (838)
...+...+.++++++++..+++++ |++|++||+++++++.. +. .+ ...+..+.+++ .
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence 001135688999999999898887 67999999999988654 21 11 11122222210 0
Q ss_pred c-----cccc----------------------------------------------------------------------
Q 003217 364 P-----DFAM---------------------------------------------------------------------- 368 (838)
Q Consensus 364 ~-----~~~~---------------------------------------------------------------------- 368 (838)
. ..+.
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 0 0000
Q ss_pred ------ccceeeEEEecCC---C-----------Cccee----------------------------------eeeEeec
Q 003217 369 ------EDEFKTKIVTSSK---K-----------DKAQS----------------------------------SFGFFQR 394 (838)
Q Consensus 369 ------~~~~~~~~~s~~~---~-----------~~~~~----------------------------------s~~~~~~ 394 (838)
+.+++++.+.... + ...+. ++.|++.
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 0011111100000 0 00000 1223444
Q ss_pred CcceeeecCCcEEEEec--cCccc---------------cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CC------
Q 003217 395 SRNAIMGAADAVRRVAA--KGGFG---------------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------ 449 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~--~g~~~---------------~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g------ 449 (838)
+..+++|+.|+..++|. .+.+. +|...|.+|+|+|||+ |++|+.||+|+|||+ ++
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 55677888888888886 22221 4667899999999998 799999999999998 44
Q ss_pred ---------------------------------------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC
Q 003217 450 ---------------------------------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 450 ---------------------------------------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (838)
+++.++.+|.++|++|++ || +||+|+.|++|+|||+++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 247788899999999865 78 999999999999999885
Q ss_pred c-cc-----cccc-ccccCEEEEEeC----------CCEEEEEcCCCCeeeeec
Q 003217 489 N-LL-----GGWV-AHSSPVIKMAVG----------AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 489 ~-~i-----~~l~-gH~~~V~sla~d----------g~~l~S~S~DgtIrlWdl 525 (838)
. ++ +.+. +|++.|++|++. +++|+||+.|++||+||+
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 4 22 4565 999999999865 358999999999999998
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.9e-28 Score=313.36 Aligned_cols=368 Identities=13% Similarity=0.136 Sum_probs=221.3
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+++.+ +..|.+ +.|++|++||+.+...... + ..| .++|.|++|+|+|++|++|
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~s~ 675 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------I--KAH-EDEVLCCAFSSDDSYIATC 675 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------e--ccC-CCCEEEEEEecCCCEEEEE
Confidence 345566655 445555 5689999999976543221 1 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
+.||+|++||+.++ +....+.+|.++|++++|+|++. +++|+.|++|++||+.++.....+..+.....
T Consensus 676 ~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 676 SADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp ETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred eCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 99999999999997 67888999999999999999653 68999999999999987654433333222222
Q ss_pred EEEE------------eec--eeeccccee-----------------------cccee----------------------
Q 003217 287 ALIV------------ERS--YIDLRSHLS-----------------------VNGFS---------------------- 307 (838)
Q Consensus 287 ~~~~------------~~s--~~~l~~~~~-----------------------~~~~~---------------------- 307 (838)
.+.. ++. +++++.... ...+.
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 2211 111 122211100 00000
Q ss_pred ---------eeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc----cccee
Q 003217 308 ---------SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM----EDEFK 373 (838)
Q Consensus 308 ---------~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~----~~~~~ 373 (838)
..+...+.++++++++..+++++ +++|++||+.++..+..+.+|...+..+.+++.....+ +..++
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence 01234566778888888888776 57899999999999999888877666666666433211 22222
Q ss_pred eEEEecC--------------------------------------C------CCcceeeeeEeecCcceeeecCCcEEEE
Q 003217 374 TKIVTSS--------------------------------------K------KDKAQSSFGFFQRSRNAIMGAADAVRRV 409 (838)
Q Consensus 374 ~~~~s~~--------------------------------------~------~~~~~~s~~~~~~~~~~~~g~~~~v~~v 409 (838)
+|..... . ......++.+.+.+..+++|..++..++
T Consensus 908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i 987 (1249)
T 3sfz_A 908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987 (1249)
T ss_dssp EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence 2211000 0 0011223344445555555555554444
Q ss_pred ec--c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCe
Q 003217 410 AA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGI 480 (838)
Q Consensus 410 ~~--~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-G~~LasGs~Dgt 480 (838)
+. . ..+..|...|.+++++|+|. +++|+.|++|++||+ +++++ .+..|...|.++++. +..+++++.|++
T Consensus 988 ~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 1066 (1249)
T 3sfz_A 988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGT 1066 (1249)
T ss_dssp EETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSSEEEEEESSSE
T ss_pred EEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCCcEEEEECCCc
Confidence 33 1 12334555566666666654 556666666666666 33333 344556666665542 335555566666
Q ss_pred EEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCC
Q 003217 481 VQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 481 IrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
|++||+. ++++..+.+|.+.|.+++ ++++++++++.|++|++||+.+..
T Consensus 1067 v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp EEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 6666654 455555666666665554 355566666666666666654433
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=9.4e-29 Score=267.91 Aligned_cols=276 Identities=19% Similarity=0.209 Sum_probs=195.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.++|+||+|+|+ +++|+|||.||+||+||+.++. .........+++|..+|++++|+|+|+ |++|+.|+.|++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS---SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC---cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 889999999997 5899999999999999998752 111234567899999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
............ ....+......+.+..+++++ ++.+++||+........
T Consensus 115 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 115 LTTGTTTRRFVG-----------------------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp TTTTEEEEEEEC-----------------------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ecccceeeeecC-----------------------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 866432211110 022344555566677777766 67899999987654322
Q ss_pred -EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCC
Q 003217 348 -FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNR 420 (838)
Q Consensus 348 -l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~ 420 (838)
+..+......+.++.... ....+.+..++..+++. . ..+..|..
T Consensus 166 ~~~~~~~~v~~~~~~~~~~-----------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSS-----------------------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CSSSCSSCEEEEEECSCSS-----------------------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EeccccCcccceEEccCCC-----------------------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 222222222222111100 11223444455444443 1 13456788
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCCC-ccc-----
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEG-NLL----- 491 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g-~~i----- 491 (838)
.|.+++++|++. |++|+.|++|++||+ +++++..+..| ..|.++++. +.++++++.|++|+|||+++ .++
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc
Confidence 899999999987 789999999999999 67888888754 578888763 45677778899999999874 332
Q ss_pred ----ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 492 ----GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 492 ----~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
....+|...|++|++ |+++|+||+.||+||+||+.++
T Consensus 296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 234589999999985 7889999999999999999874
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=283.05 Aligned_cols=306 Identities=13% Similarity=0.146 Sum_probs=219.2
Q ss_pred cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCC
Q 003217 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (838)
Q Consensus 149 ~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~ 228 (838)
.|+.|+|||+.+...... .....+ ..+|.|++|+|++++|++|+.||+|++|++.+..
T Consensus 43 ~d~~v~iw~~~~~~~~~~-----------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~---- 100 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKP-----------------IASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN---- 100 (416)
T ss_dssp CCCCCEEEESSSGGGCSC-----------------SCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT----
T ss_pred CCCeEEEEEccCCCCCcE-----------------EEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccc----
Confidence 588999999976432111 111112 6789999999999999999999999999998721
Q ss_pred CCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcc------eeeecCCCceeeeEEEEeeceeecccc
Q 003217 229 DGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIE------KALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 229 ~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~------~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
...+....+.+|.++|++++|+|+ +. |++|+.|++|++||+.+.. ..+.... +..|
T Consensus 101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------~~~~ 164 (416)
T 2pm9_A 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ----------------SMSS 164 (416)
T ss_dssp SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC----------------SCCS
T ss_pred ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc----------------ccCC
Confidence 111467788999999999999998 65 8899999999999997754 1111100 0011
Q ss_pred eeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEe
Q 003217 301 LSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (838)
...+.++++.++ +..+++++ +++|++||+++++++..+..+...
T Consensus 165 ----------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------------------ 210 (416)
T 2pm9_A 165 ----------VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------------------------ 210 (416)
T ss_dssp ----------SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------------------------
T ss_pred ----------CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------------------------
Confidence 345777888877 56777766 678999999999988877654210
Q ss_pred cCCCCcceeeeeEeecC-cceeeecCCc---EEEEec--c-----Cccc-cCCCceEEEEEcC-CCc-EEEEECCCeEEE
Q 003217 379 SSKKDKAQSSFGFFQRS-RNAIMGAADA---VRRVAA--K-----GGFG-DDNRRTEALTTSI-DGM-IWTGGANGLLLQ 444 (838)
Q Consensus 379 ~~~~~~~~~s~~~~~~~-~~~~~g~~~~---v~~v~~--~-----g~~~-~~~~~v~ala~S~-dg~-l~Sgs~DgtIrl 444 (838)
.........+.+.+.+ ..++++..++ ..+++. . ..+. .|...|.+++++| ++. |++|+.|++|++
T Consensus 211 -~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 211 -SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp -SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred -cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 0001111223344433 2344455443 333332 1 1244 5778899999998 776 899999999999
Q ss_pred EcC-CCCeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC-Ccccccc-------------------------
Q 003217 445 WDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-GNLLGGW------------------------- 494 (838)
Q Consensus 445 WD~-~g~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g~~i~~l------------------------- 494 (838)
||+ +++++.++.+|...|.++++ ++ .+|++|+.|++|+|||+. ++.....
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred eeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 999 78999999999999998876 56 799999999999999986 3322211
Q ss_pred ----------cccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 495 ----------VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 495 ----------~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..|...|.+++ +||+++++++.|++|++|++.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 11666675554 6899999999999999999875
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1e-28 Score=271.29 Aligned_cols=268 Identities=16% Similarity=0.183 Sum_probs=205.1
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.. +..|.+ +.|++|++||+.+...... ...+ ..+|.+++|+|++++|++|+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~-~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-------------------IPLR-SSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------EECS-SSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------eecC-CccEEEEEECCCCCEEEEEe
Confidence 45666654 445655 5699999999876433211 1233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
.|++|++|++.++. ........+.+|.+.|.++.|++++.|++|+.|++|++||+.++.....+.
T Consensus 117 ~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~----------- 181 (340)
T 1got_B 117 LDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT----------- 181 (340)
T ss_dssp TTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc-----------
Confidence 99999999998752 122345678899999999999999999999999999999997754332221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
+| ...+.++++++++..+++++ +++|++||+++++++.++.+|...+..+
T Consensus 182 --------~h----------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v----------- 232 (340)
T 1got_B 182 --------GH----------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI----------- 232 (340)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE-----------
T ss_pred --------CC----------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE-----------
Confidence 12 44678888888888888877 6899999999999988887765543333
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccc--cCCCceEEEEEcCCCc-EEEEECCC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
.|.+++...++|+.++..++|.. + .+. .+...|.+++|+|+|. +++|+.|+
T Consensus 233 --------------------~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 233 --------------------CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp --------------------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred --------------------EEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence 33444444556666665555541 1 111 1234688999999998 78999999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
+|++||+ +++++.++.+|..+|.++++ +|.+|++|+.|++|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999 78999999999999999976 688999999999999997
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.5e-28 Score=275.53 Aligned_cols=323 Identities=16% Similarity=0.157 Sum_probs=233.4
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 138 l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
+..++..|++ +.|+.|++||+.+...... + .+...+.+.++++++++|++|+.||+|+
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~-----------------~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKM-----------------L----KRADYTAVDTAKLQMRRFILGTTEGDIK 122 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETTTT-----------------S----CSCCEEEEEEECSSSCEEEEEETTSCEE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccceeeE-----------------E----ecCCceEEEEEecCCCEEEEEECCCCEE
Confidence 4455666666 5699999999876433211 1 1123455567899999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
+||+.++ +....+.+|.+.|++++|+|+|+ |++|+.|++|++||+.+++....+.
T Consensus 123 iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------------- 178 (420)
T 3vl1_A 123 VLDSNFN--------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------------- 178 (420)
T ss_dssp EECTTSC--------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE----------------
T ss_pred EEeCCCc--------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc----------------
Confidence 9999886 56667789999999999999998 7899999999999997654322211
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCc---eEEeeecccCcccccccc
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~~~~~~~ 371 (838)
+| ...+.++++++++..+++++ +++|++||+++++++..+..+.. .+..+.+.+.......
T Consensus 179 ---~h----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 243 (420)
T 3vl1_A 179 ---GH----------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH-- 243 (420)
T ss_dssp ---CC----------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG--
T ss_pred ---CC----------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee--
Confidence 12 45688888888888888877 67899999999999988875321 2222222211111000
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----cc-ccCCCceEEEEEcCCCc--EEEEECCCeE
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GF-GDDNRRTEALTTSIDGM--IWTGGANGLL 442 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~-~~~~~~v~ala~S~dg~--l~Sgs~DgtI 442 (838)
. ........+.|.+++..+++|..++..+++.. + .+ ..+...|.+++++|++. +++|+.||+|
T Consensus 244 ------~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 244 ------E--ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ------G--GCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ------e--cccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 0 00112234566677777788888887777651 1 11 23667899999999985 7899999999
Q ss_pred EEEcC-CCC-eeeEeec-CCccEEEEEE-cCCEEEEEeeCCeEEEEeCCC----------cccccccccccCEEEEE--e
Q 003217 443 LQWDP-NGN-RLQDFQY-LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEG----------NLLGGWVAHSSPVIKMA--V 506 (838)
Q Consensus 443 rlWD~-~g~-~l~tl~~-H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g----------~~i~~l~gH~~~V~sla--~ 506 (838)
++||+ +++ .+..+.+ |...|.++.. +|++|++|+.|++|++||+.. .....+.+|.+.|.+++ +
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred EEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 99999 554 4777877 6778888854 688999999999999999753 12335668889998887 4
Q ss_pred CCC---EEEEEcCCCCeeeeecCCC
Q 003217 507 GAG---YIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 507 dg~---~l~S~S~DgtIrlWdl~s~ 528 (838)
+++ .+++++.++.+++|++.+|
T Consensus 396 ~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 396 DDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp CSSSSCEEEEEETTTEEEEEESCC-
T ss_pred CCCCcceEEEEcCCceEEEEeccCC
Confidence 777 7888888999999998653
No 32
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.1e-29 Score=282.78 Aligned_cols=271 Identities=18% Similarity=0.280 Sum_probs=209.6
Q ss_pred ceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 133 CFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
..+.++..+++.|++ +.|+.|++||+.+...... ...| .++|.|+++ ++++|++|+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h-~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-------------------LTGH-TGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE-------------------ECCC-SSCEEEEEC--CSSEEEEEET
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCC-CCcEEEEEE--CCCEEEEEcC
Confidence 346677777877777 5689999999976543211 1123 779999998 6789999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
||+|++||+.++ +....+.+|...|.+++|++ +.|++|+.||+|++||+.+....... .
T Consensus 192 dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~-------~----- 250 (435)
T 1p22_A 192 DSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLR-------R----- 250 (435)
T ss_dssp TSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEE-------E-----
T ss_pred CCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceee-------e-----
Confidence 999999999987 67788999999999999974 46899999999999999764321000 0
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
.+.+| ...+.++.. ++..+++++ +++|++||+++++++.++..|..
T Consensus 251 ----~~~~~----------~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------- 297 (435)
T 1p22_A 251 ----VLVGH----------RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR----------------- 297 (435)
T ss_dssp ----EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ----EecCC----------CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----------------
Confidence 01111 345666666 456676665 68999999999988776643321
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CC
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g 449 (838)
.+.++.++ +..+++|+.||+|++||+ ++
T Consensus 298 --------------------------------------------------~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 298 --------------------------------------------------GIACLQYR-DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp --------------------------------------------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC
T ss_pred --------------------------------------------------cEEEEEeC-CCEEEEEeCCCeEEEEECCCC
Confidence 12233342 346899999999999999 79
Q ss_pred CeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Cc---------ccccccccccCEEEEEeCCCEEEEEcCCCC
Q 003217 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAVGAGYIFTLANHGG 519 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~---------~i~~l~gH~~~V~sla~dg~~l~S~S~Dgt 519 (838)
+++.++.+|...|.++++++.+|++|+.||+|++||+. ++ ++..+.+|.+.|.++++++++++|++.||+
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 406 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCE
Confidence 99999999999999999999999999999999999975 33 688899999999999999999999999999
Q ss_pred eeeeecCCCCC
Q 003217 520 IRGWNVTSPGP 530 (838)
Q Consensus 520 IrlWdl~s~~~ 530 (838)
|++||+....+
T Consensus 407 i~iwd~~~~~~ 417 (435)
T 1p22_A 407 ILIWDFLNDPA 417 (435)
T ss_dssp EEEEC------
T ss_pred EEEEECCCCCC
Confidence 99999876433
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=6.6e-29 Score=267.49 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=178.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
..+|.+++|+|+|++|+||+.|++|++||+.++. .+...++.||.++|++|+|+++ |+ |+|||.|++||||
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 7799999999999999999999999999997531 1456789999999999999864 76 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++..... . .+.+| ...+.++++.++ +..+++++ +++|++||++++..
T Consensus 83 d~~~~~~~~~--------~---------~~~~h----------~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 83 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EBSSSCBCCC--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EcCCCceEEE--------E---------EeecC----------CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 9976421100 0 01111 446788888775 66777776 67999999987531
Q ss_pred --EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 345 --LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 345 --l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
...+.+|.. .|
T Consensus 136 ~~~~~~~~h~~-------------------------------------------------------------------~v 148 (297)
T 2pm7_B 136 TSPIIIDAHAI-------------------------------------------------------------------GV 148 (297)
T ss_dssp BCCEEEECCSS-------------------------------------------------------------------CE
T ss_pred eeeeeeecccC-------------------------------------------------------------------cc
Confidence 122222221 22
Q ss_pred EEEEEcCC-------------C-cEEEEECCCeEEEEcC-CCC----eeeEeecCCccEEEEEE--c---CCEEEEEeeC
Q 003217 423 EALTTSID-------------G-MIWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~d-------------g-~l~Sgs~DgtIrlWD~-~g~----~l~tl~~H~~~V~sls~--d---G~~LasGs~D 478 (838)
.+++++|+ + .|++|+.|++|++||+ +++ ++.++.+|...|+++++ + +.+|++|+.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 22333332 3 5899999999999999 555 67789999999999976 4 3699999999
Q ss_pred CeEEEEeCCC-c---ccccc--cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 479 GIVQVLDLEG-N---LLGGW--VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 479 gtIrlWD~~g-~---~i~~l--~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++|+|||++. . ....+ .+|.+.|+++++ ++++|++++.|++|++|+...
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999863 1 12233 578999999985 788999999999999999754
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.4e-29 Score=275.38 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=210.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++++|++|+.||.|++||... +....+.+|..+|++++|+|+++ |++++.|++|++||+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 66999999999999999999999999999443 56778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.++.....+.......... ....+ ......+.+++..+++..+..+.++.|++||+.+++.+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSI-------NAENH-------SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp TTTEEEEEECCC-----------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred CCCcEEEEeeccccCccce-------eeccc-------cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 8755433332211100000 00000 000111444555554444444446789999999988777665
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (838)
.+...+. .+.+.+.+..++++..++..+++. . ..+..+...+.
T Consensus 245 ~~~~~i~-------------------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 245 GHHGPIS-------------------------------VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp CCSSCEE-------------------------------EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred cCCCceE-------------------------------EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence 5443222 233444444556666666555554 1 12345777899
Q ss_pred EEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cc----------
Q 003217 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN---------- 489 (838)
Q Consensus 424 ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~---------- 489 (838)
+++++|++.+++++.|+.|++||+ +++++..+..|...|.++++ +|++|++|+.||.|++||+. ++
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 999999998899999999999999 78999999999999999876 68899999999999999987 56
Q ss_pred ----------cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 490 ----------LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 490 ----------~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
++..+.+|.. .|.++++ ++++|++++.|++|++|++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7889999977 9999985 67899999999999999974
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=272.76 Aligned_cols=239 Identities=14% Similarity=0.048 Sum_probs=178.8
Q ss_pred ceeEEEEecCC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.+++...+ .|.+ +.|++|||||+.+...... ..+....| .++|.||+|+|+|++|+||+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~---------------~~~~~~~H-~~~V~~v~~spdg~~l~sgs 146 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIV---------------SKFCKYEH-DDIVSTVSVLSSGTQAVSGS 146 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEE---------------EEEEEECC-SSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeE---------------eeccccCC-CCCEEEEEECCCCCEEEEEe
Confidence 34667776544 6665 5689999999976543211 01112234 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
.||+|++||+.++ +.+.++.+|.+.|++++|++++. |+|||.|++||+||+.+++....+...
T Consensus 147 ~d~~i~iwd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------- 211 (344)
T 4gqb_B 147 KDICIKVWDLAQQ--------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS------- 211 (344)
T ss_dssp TTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------
T ss_pred CCCeEEEEECCCC--------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-------
Confidence 9999999999997 67888999999999999999985 689999999999999875543222110
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.....+.++++.+. +..+++++ +++|++||+++++++.++.+
T Consensus 212 --------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---------------- 255 (344)
T 4gqb_B 212 --------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------------- 255 (344)
T ss_dssp ----------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----------------
T ss_pred --------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----------------
Confidence 01224567777664 44666665 68999999998876555433
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-c-EEEEECCCeEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQ 444 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrl 444 (838)
|...|.+++|+|++ . |++|+.|++|++
T Consensus 256 ---------------------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 256 ---------------------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp ---------------------------------------------------CSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ---------------------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 23345678899987 3 789999999999
Q ss_pred EcCCCCeeeEeecCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCCc
Q 003217 445 WDPNGNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 445 WD~~g~~l~tl~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (838)
||+....+..+.+|.+.|+++++ +|+ .|++|+.|++|++|++..+
T Consensus 285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99954344567899999999976 565 6789999999999998744
No 36
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=8.1e-28 Score=282.29 Aligned_cols=334 Identities=10% Similarity=0.106 Sum_probs=225.4
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCC---CeEEEEEcCC-CCE
Q 003217 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS---SVMCMVGDEA-SGV 205 (838)
Q Consensus 134 ~~~~l~~~~~---~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~---~V~~la~s~d-g~~ 205 (838)
.+.+++...+ .+.+ +.|+.|++||+.+...... + ..+ .. +|.|++|+|+ +++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----------------~--~~~-~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----------------D--RTH-HKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----------------E--CSS-SCTTCCEEEEEECSTTCCE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----------------e--ccc-CCCCceEEEEEECCCCCCE
Confidence 3445554432 4554 5689999999876443211 1 112 55 8999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEe-c---cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~---gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
|++|+.||.|++||+.++ +....+ . +|.++|++++|+ +++ |++++.|++|++||+.+++....+..
T Consensus 222 l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSG--------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTC--------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCC--------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999999999999999887 567777 6 999999999999 887 78999999999999976543322211
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
... . ....+..+... ++..+++++ ++.|++||+.+++++..+..|...+..+.
T Consensus 293 ~~~------------------~-------~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 293 DKQ------------------Q-------LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp CTT------------------C-------GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCC------------------c-------ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 100 0 01233444444 455666655 67899999999988888877766555554
Q ss_pred cccC---------------------------------ccc----ccccceeeEEEecCCC--------------------
Q 003217 360 MSLL---------------------------------PDF----AMEDEFKTKIVTSSKK-------------------- 382 (838)
Q Consensus 360 ~s~~---------------------------------~~~----~~~~~~~~~~~s~~~~-------------------- 382 (838)
+ +. ... ..+..++++.....+.
T Consensus 347 ~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 347 V-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp T-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred e-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 4 22 000 0011111111110000
Q ss_pred --------------------CcceeeeeEeecCcceeeecC-CcEEEEec--c-----CccccCCCceEEEEEcCCCc-E
Q 003217 383 --------------------DKAQSSFGFFQRSRNAIMGAA-DAVRRVAA--K-----GGFGDDNRRTEALTTSIDGM-I 433 (838)
Q Consensus 383 --------------------~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~--~-----g~~~~~~~~v~ala~S~dg~-l 433 (838)
......+.+. +..++++.. ++..+++. . ..+..|...|.+++++|+|. |
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 503 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 503 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence 0000011111 233444554 55555543 1 23445677888888888887 7
Q ss_pred EEEECCCeEEEEcC-CCCeeeEeec-CCccEEEEEE------------cCCEEEEEeeCCeEEEEeCC-C-ccccccccc
Q 003217 434 WTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAH 497 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~-~g~~l~tl~~-H~~~V~sls~------------dG~~LasGs~DgtIrlWD~~-g-~~i~~l~gH 497 (838)
++|+.|+.|++||+ +++++.++.+ |...|+++++ +|++|++|+.||+|+|||++ + +++..+.+|
T Consensus 504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC
Confidence 88888888999998 6888888887 8888888865 67888888889999999987 3 678888889
Q ss_pred ccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 498 SSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 498 ~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+.|.+++ ++++ |+|++.|++|++|++.
T Consensus 584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred ccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 88888887 4777 8888999999999875
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=3.8e-27 Score=254.19 Aligned_cols=274 Identities=14% Similarity=0.186 Sum_probs=209.7
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+.+++.. +..|+++.|+.|++||+.+...... ...+....+ ..+|.+++|+|++++|++|+.
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEEEES
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee--------------eecccccCC-CCcEEEEEEcCCCCEEEEEcC
Confidence 34455544 4577777799999999976432211 111111123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
||+|++||+.++. ......+.+|...|++++|+|+++ |++|+.|+.|++||+.+.+....+.
T Consensus 118 d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~----------- 180 (337)
T 1gxr_A 118 ASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------- 180 (337)
T ss_dssp SSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCcEEEEECCCCC------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----------
Confidence 9999999998862 124567889999999999999998 7899999999999997654322221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
.| ...+.+++.++++..+++++ ++.|++||+++++.+..+..
T Consensus 181 --------~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------------------- 223 (337)
T 1gxr_A 181 --------GH----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------------------- 223 (337)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------------------
T ss_pred --------cc----------cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------------------
Confidence 11 34577888888888888876 67899999998876544321
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~ 448 (838)
...+.+++++|++. +++++.|+.|++||+.
T Consensus 224 -------------------------------------------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 224 -------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -------------------------------------------------CCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 11244677888887 7899999999999996
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeee
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlW 523 (838)
......+..|...|.++++ +|++|++++.||.|++||++ ++.+ ....|...|.++++ +++++++++.|+.|++|
T Consensus 255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 5455678889999999876 68899999999999999987 4544 34568999999875 78899999999999999
Q ss_pred ecC
Q 003217 524 NVT 526 (838)
Q Consensus 524 dl~ 526 (838)
++.
T Consensus 334 ~~~ 336 (337)
T 1gxr_A 334 EVI 336 (337)
T ss_dssp EEE
T ss_pred EEe
Confidence 963
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=5.9e-28 Score=290.99 Aligned_cols=277 Identities=17% Similarity=0.256 Sum_probs=201.4
Q ss_pred ceeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 133 CFLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~--~-~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
..+.+|+.. + +.|.+ +.|++||+||+.+...... ....+...| ...|.|++|+|++++|+|
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h-~~~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGH-SHFVEDVVLSSDGQFALS 447 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCC-CCcEEEEEECCCCCEEEE
Confidence 346666654 2 34555 5699999999865321100 000011233 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
|+.||+||+||+.++ .....+.+|.+.|++++|+|+|+ |+|||.|++|||||+.... .......
T Consensus 448 gs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~------ 512 (694)
T 3dm0_A 448 GSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEG------ 512 (694)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSS------
T ss_pred EeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccC------
Confidence 999999999999987 67788999999999999999997 8999999999999985421 1111100
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCC--CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
..+| ...+.++++++++ ..+++++ +++|++||+++++++.++.
T Consensus 513 ---------~~~h----------~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------------- 558 (694)
T 3dm0_A 513 ---------GEGH----------RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------------- 558 (694)
T ss_dssp ---------TTSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---------------
T ss_pred ---------CCCC----------CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---------------
Confidence 0011 3457788887765 4566666 6899999998877654443
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
.|...|.+++++|+|. |++|+.|++|+
T Consensus 559 ----------------------------------------------------~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 559 ----------------------------------------------------GHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp ----------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred ----------------------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 2334466788999987 78999999999
Q ss_pred EEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc-------------------cC
Q 003217 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-------------------SP 500 (838)
Q Consensus 444 lWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-------------------~~ 500 (838)
+||+ +++++..+.. ...|.++++ ++.+|++ +.|+.|+|||++ ++++..+..|. -.
T Consensus 587 iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEETTTTEEEECCBC-SSCEEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred EEECCCCceEEEecC-CCcEEEEEEcCCCcEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999 7888888765 457888876 4556655 567789999997 55555554322 23
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
|.+++ +||++|+|||.||+||+|++..
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 67776 4789999999999999999854
No 39
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.1e-27 Score=268.42 Aligned_cols=297 Identities=17% Similarity=0.249 Sum_probs=224.6
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+.++..+++.|++ +.|++|++||+.+...... + ..| .++|.|++++ +++|++|+.||
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------L--VGH-TGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------C--CCC-SSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------E--cCC-CCCEEEEEec--CCEEEEEeCCC
Confidence 4566777888877 5689999999976543211 1 123 7799999998 57999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
+|++||+.++ +....+.+|...|++++|++ ..|++|+.|++|++||+.+++....+.
T Consensus 180 ~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------- 236 (445)
T 2ovr_B 180 TLKVWNAETG--------ECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLM-------------- 236 (445)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEE--------------
T ss_pred eEEEEECCcC--------cEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEc--------------
Confidence 9999999987 67888999999999999964 348999999999999997654322211
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
+| ...+.++.. ++..+++++ +++|++||+.+++++.++..|...+..+.+
T Consensus 237 -----~~----------~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------ 287 (445)
T 2ovr_B 237 -----GH----------VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------ 287 (445)
T ss_dssp -----CC----------SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE------------
T ss_pred -----CC----------cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE------------
Confidence 11 345666666 355566655 689999999999998888765543322221
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCcEEEEECCCeEEEEc
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD 446 (838)
++..++++..++..+++. .+ .+..|...+.++.++ +..+++|+.||+|++||
T Consensus 288 ---------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 288 ---------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWD 345 (445)
T ss_dssp ---------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred ---------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEE
Confidence 122334455555444443 11 234566677777764 34689999999999999
Q ss_pred C-CCCeeeEeec---CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc-----cccccCEEEEEe--CCCEEEEE
Q 003217 447 P-NGNRLQDFQY---LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-----VAHSSPVIKMAV--GAGYIFTL 514 (838)
Q Consensus 447 ~-~g~~l~tl~~---H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-----~gH~~~V~sla~--dg~~l~S~ 514 (838)
+ +++++.++.+ |...|+++++++++|++|+.||+|++||+. ++++..+ .+|.+.|+++++ ++..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 9 7899999986 888999999999999999999999999987 7777766 588999999986 55678899
Q ss_pred cCCCC----eeeeecCC
Q 003217 515 ANHGG----IRGWNVTS 527 (838)
Q Consensus 515 S~Dgt----IrlWdl~s 527 (838)
+.||+ |.+||+..
T Consensus 426 ~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred ccCCCCccEEEEEECCC
Confidence 99998 99999864
No 40
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=9.4e-29 Score=275.11 Aligned_cols=284 Identities=8% Similarity=0.075 Sum_probs=202.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCccCCCCCc--ceeEEeccccccEEEEEEecC--------C
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG-------RIMCWKMNARLLDSDDGF--GEVLSWQAHRGPVLSLCISSY--------G 253 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG-------tIrvWd~~~g~~~~~~~~--~~~~~l~gH~~~V~slafs~d--------G 253 (838)
.-||+|++|+|||++|++|+.|. +|++|++..+.......+ .....|.+|...|.+++++++ +
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35999999999999999998644 599999876520000000 112357789999999988754 1
Q ss_pred --CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE--e
Q 003217 254 --DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS--A 329 (838)
Q Consensus 254 --~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s--~ 329 (838)
.|++|+.|+++|+|++.+....+... ... ..... . -+...++++++++++..++. +
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~----~~~~~--~--------~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL------TSV----DFDAS--T--------NADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE------EEE----CSSCC--C--------CTTCCEEEEEECTTSSCEEEEES
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe------eee----ceeec--C--------CcccCEEEEEEcCCCCEEEEEEC
Confidence 15567789999999986543222110 000 00000 0 01234788999999887654 3
Q ss_pred C-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE
Q 003217 330 G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (838)
Q Consensus 330 s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (838)
+ +++|+|||+.+++++..+..++.+ . .+.|.+++..+..+..+++..
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~V-~-------------------------------~v~fspdg~~l~s~s~~~~~~ 201 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETRGEV-K-------------------------------DLHFSTDGKVVAYITGSSLEV 201 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECSSCC-C-------------------------------EEEECTTSSEEEEECSSCEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCCCCce-E-------------------------------EEEEccCCceEEeccceeEEE
Confidence 3 578999999999998777543321 2 234555555556666666666
Q ss_pred Eec-cC------ccccCCCceEEEEEcCCCc-EEEEECCC----eEEEEcC-CCC----eeeEeecCCccEEEEEE--cC
Q 003217 409 VAA-KG------GFGDDNRRTEALTTSIDGM-IWTGGANG----LLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG 469 (838)
Q Consensus 409 v~~-~g------~~~~~~~~v~ala~S~dg~-l~Sgs~Dg----tIrlWD~-~g~----~l~tl~~H~~~V~sls~--dG 469 (838)
++. .+ ....|...|.+++|+||+. +++++.|+ ++++||+ .+. ..+.+.+|...|+++++ ||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence 654 11 2334667889999999998 78888777 6899998 443 24567889999999865 79
Q ss_pred CEEEEEeeCCeEEEEeCC-Cccccc-ccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 470 SQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 470 ~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
++||+|+.|++|+|||++ ++++.+ +.+|.+.|++|++ ||++|+|+|.|++||||++.
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999997 778776 6899999999985 88999999999999999984
No 41
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=1.4e-27 Score=272.00 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=209.1
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+.++..+++.|++ +.|++|++||+.+...... + ..| .++|.|++|++++ +|+||+.||
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------L--SGH-DGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-----------------E--CCC-SSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-----------------E--eCC-CcCEEEEEEcCCC-EEEEEeCCC
Confidence 4466677777776 5689999999976543221 1 123 7899999999887 999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|++||+.++ +....+.+|.++|++++|++ ++. |++|+.|++|++||+.+................. .
T Consensus 184 ~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 254 (464)
T 3v7d_B 184 TVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-H 254 (464)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-S
T ss_pred CEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-e
Confidence 9999999987 67888999999999999995 555 7899999999999997643221111000000000 0
Q ss_pred eec-----eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 291 ERS-----YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 291 ~~s-----~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
... ...+.+ +...+.++ .+++..+++++ +++|++||+.+++++..+.+|
T Consensus 255 ~~~~~~~~~~~~~~----------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------- 309 (464)
T 3v7d_B 255 TPEENPYFVGVLRG----------HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH------------- 309 (464)
T ss_dssp CGGGCTTEEEEECC----------CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC-------------
T ss_pred ccCCCeEEEEEccC----------ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-------------
Confidence 000 000111 13344454 33466677666 689999999988876554322
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
...|.+++++|++. +++|+.|++|+
T Consensus 310 ------------------------------------------------------~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 310 ------------------------------------------------------TDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp ------------------------------------------------------SSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ------------------------------------------------------CCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 23355677888876 89999999999
Q ss_pred EEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc-cccccCEEEEEeCCCEEEEEcCCCCe
Q 003217 444 QWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMAVGAGYIFTLANHGGI 520 (838)
Q Consensus 444 lWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla~dg~~l~S~S~DgtI 520 (838)
+||+ ++++++++.+|...|.++++++++|++|+.||+|++||+. +...... ..+...+.++.++++++++++ |++|
T Consensus 336 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 336 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 9999 7999999999999999999999999999999999999997 3433322 223334555667999999998 9999
Q ss_pred eeeecCCCCCCc
Q 003217 521 RGWNVTSPGPLD 532 (838)
Q Consensus 521 rlWdl~s~~~~d 532 (838)
++||+.+...+.
T Consensus 415 ~iwd~~~g~~~~ 426 (464)
T 3v7d_B 415 NIYNLRSGKLVH 426 (464)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEe
Confidence 999998765544
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=9.4e-29 Score=268.93 Aligned_cols=252 Identities=13% Similarity=0.062 Sum_probs=177.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
..+|.|++|+|+|++|+||+.|++||+||+.++. ......+.||.++|++|+|+++ |+ |+|||.|++|++|
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 7899999999999999999999999999998752 1245678999999999999863 65 8999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++...... .+.+| ...+.+++++++ +..+++++ |++|++||++++..
T Consensus 87 d~~~~~~~~~~-----------------~~~~h----------~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 87 REENGTWEKSH-----------------EHAGH----------DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp CCSSSCCCEEE-----------------EECCC----------SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred ECCCCcceEEE-----------------EccCC----------CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 99764211000 01112 345777888775 56777777 68999999987632
Q ss_pred EE---EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEeccCccccCCC
Q 003217 345 LK---VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 345 l~---~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
.. .+..|...+ ..+.+.+... ..+..+. .+ .
T Consensus 140 ~~~~~~~~~h~~~v-------------------------------~~~~~~~~~~~~~~~~~~--------~~----~-- 174 (316)
T 3bg1_A 140 WEVKKINNAHTIGC-------------------------------NAVSWAPAVVPGSLIDHP--------SG----Q-- 174 (316)
T ss_dssp EEECCBTTSSSSCB-------------------------------CCCEECCCCCC------C--------CS----C--
T ss_pred cceeeeeccccCCc-------------------------------ceEEEccccCCccccccc--------cc----c--
Confidence 11 111111100 0111111100 0000000 00 0
Q ss_pred ceEEEEEcCC-CcEEEEECCCeEEEEcCC-C---CeeeEeecCCccEEEEEE--cC----CEEEEEeeCCeEEEEeCCC-
Q 003217 421 RTEALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG- 488 (838)
Q Consensus 421 ~v~ala~S~d-g~l~Sgs~DgtIrlWD~~-g---~~l~tl~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~g- 488 (838)
...+ ..|++|+.|++|++||+. + ++++++.+|..+|+++++ ++ ++|++|+.|++|+|||++.
T Consensus 175 ------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 175 ------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp ------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred ------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 0112 358999999999999994 4 477889999999999975 44 7899999999999999863
Q ss_pred ---c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 489 ---N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 489 ---~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
+ ....+.+|.+.|+++++ ++++|++++.|++|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 24556789999999985 68899999999999999965
No 43
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=5.2e-28 Score=273.32 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=203.2
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+.|.+|.|++|+|||..++..... +....+ ...|.||+|+|+|++|++|+.||+|++||+.
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~~~~~-----------------~~~~~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 4466678899999999987543211 111223 6789999999999999999999999999999
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
++ +.+..+.+|...|.+++++ +. |++|+.|+++++||.......+.. +.+|
T Consensus 178 ~~--------~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~------------------~~~h 229 (420)
T 4gga_A 178 QQ--------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT------------------LSGH 229 (420)
T ss_dssp TT--------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE------------------EECC
T ss_pred CC--------cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE------------------eccc
Confidence 97 6788899999999998875 45 789999999999998653321110 1112
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
...+..+...+.+..+++++ ++.+++||..+++.... .. .
T Consensus 230 ----------~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----~~------------------~------ 270 (420)
T 4gga_A 230 ----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----PL------------------Q------ 270 (420)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----CS------------------E------
T ss_pred ----------ccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----ee------------------e------
Confidence 34566777778888888776 67899999987542000 00 0
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEE--EECCCeEEEEcC-CCCeeeE
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWT--GGANGLLLQWDP-NGNRLQD 454 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~S--gs~DgtIrlWD~-~g~~l~t 454 (838)
.+..+...|.+++++|++. +++ |+.|++|++||+ +|+++..
T Consensus 271 ----------------------------------~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 271 ----------------------------------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp ----------------------------------EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred ----------------------------------eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 0113344566778877653 444 457999999999 7899888
Q ss_pred eecCCccEEEEE--EcCCEEEEEe--eCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 455 FQYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 455 l~~H~~~V~sls--~dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+..|.. |.++. ++++.+++++ .|++|+|||.. ++++.++.||.+.|++|++ ||++|+|||.|++||+||+..
T Consensus 317 ~~~~~~-v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 317 VDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EECSSC-EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eccccc-eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 877654 55553 4678777765 79999999987 7899999999999999985 788999999999999999877
Q ss_pred CCCCc
Q 003217 528 PGPLD 532 (838)
Q Consensus 528 ~~~~d 532 (838)
..|..
T Consensus 396 ~~~~~ 400 (420)
T 4gga_A 396 LDPAR 400 (420)
T ss_dssp SSCC-
T ss_pred CCccc
Confidence 65543
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=5.9e-28 Score=270.84 Aligned_cols=234 Identities=22% Similarity=0.316 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc------------------ccEEEEEEecC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------------GPVLSLCISSY 252 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~------------------~~V~slafs~d 252 (838)
.++|.|++|+|+|++|++|+ |+++++|++.++ +....+.+|. ..|++++|+||
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--------CEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--------CEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 78999999999999999987 789999999887 4555555553 24999999999
Q ss_pred CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-
Q 003217 253 GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (838)
Q Consensus 253 G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s- 330 (838)
|+ |++|+.|++|+|||+.+++....+ .+| ...+.++++.+++..+++++
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------~~h----------~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMIL-------------------QGH----------EQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCC----------SSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEE-------------------ccC----------CCCEEEEEEcCCCCEEEEecC
Confidence 98 789999999999999765432222 122 45678888888888888877
Q ss_pred CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
|++|++||++++++..++..+
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~----------------------------------------------------------- 206 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIE----------------------------------------------------------- 206 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECS-----------------------------------------------------------
T ss_pred CCcEEEEECCCCeeEEEEEcC-----------------------------------------------------------
Confidence 689999999998875544211
Q ss_pred ccCccccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEe-------ecCCccEEEEEE--cCCEEEEEeeC
Q 003217 411 AKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-------~~H~~~V~sls~--dG~~LasGs~D 478 (838)
..+.+++++| ++. +++|+.|++|++||+ +++++..+ .+|...|+++++ +|++|++|+.|
T Consensus 207 ---------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 207 ---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp ---------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 1133566777 665 789999999999999 68887777 579999999976 68899999999
Q ss_pred CeEEEEeCCC-------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 479 GIVQVLDLEG-------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 479 gtIrlWD~~g-------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++|+|||+.. .+...+.+|.+.|.++++ ++++++|++.|++|++||+.+..+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 9999999752 345678899999999985 678999999999999999877554
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=9.5e-28 Score=257.47 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=199.0
Q ss_pred eEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~-~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+..|+-+. +.|.+|.|++|||||+.++..... +..+.| ...|.||+|+|++++|+||+.||
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~-----------------~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCeEEEEEECCCCCEEEEEECCC
Confidence 33444443 356668899999999987543321 222223 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
+|++|++.++ +.+..+.+|...+.++.+. +. |++|+.++.+++|+..+....+..
T Consensus 90 ~v~iw~~~~~--------~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~-------------- 145 (318)
T 4ggc_A 90 EVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------------- 145 (318)
T ss_dssp EEEEEETTTT--------EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE--------------
T ss_pred cEEEeecCCc--------eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEE--------------
Confidence 9999999997 6788899999999876654 45 789999999999998654322110
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccc
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (838)
+.+| ...+..+...+.+..+++++ +++|++||+++++...... .
T Consensus 146 ----~~~~----------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~----------------- 190 (318)
T 4ggc_A 146 ----LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q----------------- 190 (318)
T ss_dssp ----EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----E-----------------
T ss_pred ----EcCc----------cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----e-----------------
Confidence 0111 34566777777888888776 6799999998765311000 0
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc----EEEEECCCeEEEEcC
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM----IWTGGANGLLLQWDP 447 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~----l~Sgs~DgtIrlWD~ 447 (838)
. ...+...|.++++++++. +++++.+++|++||.
T Consensus 191 ------~------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 191 ------T------------------------------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp ------E------------------------------------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred ------e------------------------------------ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 0 011222344555555442 246678899999999
Q ss_pred C-CCeeeEeecCCccEEEEEE--cCCEEEEEe--eCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCC
Q 003217 448 N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGG 519 (838)
Q Consensus 448 ~-g~~l~tl~~H~~~V~sls~--dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dgt 519 (838)
. +..... ..|...|.++.+ +++.+++++ .|++|+|||+. ++++.++.+|.+.|++|++ |+++|+|+|.|++
T Consensus 229 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 229 CSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred cccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 4 454444 456667776644 677766554 79999999987 7899999999999999985 7889999999999
Q ss_pred eeeeecCCCCC
Q 003217 520 IRGWNVTSPGP 530 (838)
Q Consensus 520 IrlWdl~s~~~ 530 (838)
||+||+...+|
T Consensus 308 v~iWd~~~~dP 318 (318)
T 4ggc_A 308 LRLWRCFELDP 318 (318)
T ss_dssp EEEECCSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876554
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.6e-28 Score=268.09 Aligned_cols=304 Identities=12% Similarity=0.136 Sum_probs=216.1
Q ss_pred eeEEEEec-----CC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC----
Q 003217 134 FLRTIVCT-----EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---- 202 (838)
Q Consensus 134 ~~~~l~~~-----~~-~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d---- 202 (838)
.+.+++.. +. .+++ +.++.|++||+.+...... ...+....+ ...|.|++|+|+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--------------LQSYVDADA-DENFYTCAWTYDSNTS 84 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--------------EEEEECSCT-TCCEEEEEEEECTTTC
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--------------eeeccccCC-CCcEEEEEeccCCCCC
Confidence 45666665 23 4554 5688999999975433211 000111112 578999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
+++|++|+.||+|++||+.++ +....+.+|.++|++++|+| ++. |++|+.||+|++||+.+++....+..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 679999999999999999987 67788999999999999999 787 78999999999999976543322210
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
+.++ ...+.++++++++..+++++ ++.|++||+++++.+..+... ..
T Consensus 157 ----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~ 204 (366)
T 3k26_A 157 ----------------VEGH----------RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YD 204 (366)
T ss_dssp ----------------TTSC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HT
T ss_pred ----------------cccc----------cCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee------EE
Confidence 0111 45688888888888888876 679999999988764433220 01
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECC
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~D 439 (838)
+++........ +.. ..... ......|...|.+++++ +..+++++.|
T Consensus 205 ~~~~~~~~~~~-----------------~~~----------~~~~~------~~~~~~~~~~v~~~~~~-~~~l~~~~~d 250 (366)
T 3k26_A 205 YNPNKTNRPFI-----------------SQK----------IHFPD------FSTRDIHRNYVDCVRWL-GDLILSKSCE 250 (366)
T ss_dssp CCGGGCSSCCC-----------------CEE----------ECCCS------EEECSSCSSCCCEEEEE-TTEEEEECSS
T ss_pred ecCCCCccccc-----------------cee----------eccCc------cccccCCcceEEEEEEc-CCEEEEEecC
Confidence 11100000000 000 00000 00123466778888888 5578999999
Q ss_pred CeEEEEcC-CCCe--------------eeEeecCCccEEEE--EEc--CCEEEEEeeCCeEEEEeCC-Ccc----ccccc
Q 003217 440 GLLLQWDP-NGNR--------------LQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLE-GNL----LGGWV 495 (838)
Q Consensus 440 gtIrlWD~-~g~~--------------l~tl~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~-g~~----i~~l~ 495 (838)
+.|++||+ ++++ +..+.+|...|+++ +++ |++|++|+.||.|++||+. +++ +..+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 99999998 5543 78888899998877 567 9999999999999999987 443 34788
Q ss_pred cc--ccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 496 AH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH--~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
+| ...|.++++ ++++|++++.|++|++||+.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88 799999985 78899999999999999974
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=258.84 Aligned_cols=280 Identities=12% Similarity=0.093 Sum_probs=217.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++++|++|+.||.|++||+.++ +....+.+|.+.|++++|+|+++ |++++.|++|++||+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 889999999999999999999999999999987 67788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------CcEEEEeccCcc
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRE 343 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------~tI~lWD~~tg~ 343 (838)
.+++....+. ....+.++++++++..+++++. +.|++||+.++.
T Consensus 104 ~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 104 SNGQCVATWK------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp TTCCEEEEEE------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CCCcEEEEee------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7654322211 1345777888888888877764 689999998764
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---C----ccc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---G----GFG 416 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---g----~~~ 416 (838)
....+..... .. ...............+.+.+++..++++..++..+++.. + .+.
T Consensus 154 ~~~~~~~~~~-------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 154 ATHELTKVSE-------EP-----------IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp TTCCEEEECS-------SC-----------SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred cceeeccccc-------ce-----------eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 3221111000 00 000111111113445667777777788888887666652 1 234
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCC-------------
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNG------------- 479 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~Dg------------- 479 (838)
.+...|.+++++|++. |++++.|++|++||+ +++++..+. +...+.++++ +++++++|+.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 5778899999999997 789999999999999 688888887 6778888765 688999999888
Q ss_pred -eEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 480 -IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 480 -tIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.|++||.. ++++..+.+|...|.++++ +++++++++.|++|++|++..
T Consensus 295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999987 7889999999999999985 788999999999999999865
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=6.8e-28 Score=267.20 Aligned_cols=280 Identities=11% Similarity=0.072 Sum_probs=192.0
Q ss_pred CCCCcCcccccCCCccc--ccCcccccCCCCCCCceeecCCCCCccccCceeEEEEecCC-EEE-EecCCCEEEEeCCCC
Q 003217 86 SSSSLPEYIGKGGDIPM--FKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEE-QLW-AGGENGLRVWNLKEL 161 (838)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~-~g~d~~vrvWd~~~~ 161 (838)
.++|-+++|..++...+ ....++.+-.+...+..++... ..+ -...+.+++...+ .++ ++.|++|||||+.+.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~--~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQ--TEAGVTDVAWVSEKGILVASDSGAVELWEILEK 125 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EEE--CSSCEEEEEEETTTEEEEEETTSCEEEC-----
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cCC--CCCCEEEEEEcCCCCEEEEECCCEEEEeecccc
Confidence 46888899988776432 2233444333322221111111 111 1123666665533 444 477999999999765
Q ss_pred ccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc
Q 003217 162 YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (838)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~ 241 (838)
..... ..+....| .++|.||+|+|+|++|+||+.||+|++||+.++ +....+++|.
T Consensus 126 ~~~~~---------------~~~~~~~h-~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~h~ 181 (357)
T 4g56_B 126 ESLLV---------------NKFAKYEH-DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------AVLKSYNAHS 181 (357)
T ss_dssp ---CC---------------CCEEECCC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--------EEEEEECCCS
T ss_pred ceeEE---------------EeeccCCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEcCCC
Confidence 43211 11222234 789999999999999999999999999999987 6788899999
Q ss_pred ccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE
Q 003217 242 GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (838)
Q Consensus 242 ~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (838)
+.|++|+|++++. +++++.|++|++||+.+++........ .+ ...+.++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-----------------~~----------~~~v~~v~~ 234 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-----------------AS----------DTIPTSVTW 234 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-----------------TC----------CSCEEEEEE
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-----------------cc----------cccccchhh
Confidence 9999999999875 789999999999999775432211110 00 234667777
Q ss_pred cCCC-CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcc
Q 003217 320 DHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (838)
Q Consensus 320 ~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (838)
++++ ..+++++ +++|++||+++++++.++.+
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~----------------------------------------------- 267 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV----------------------------------------------- 267 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-----------------------------------------------
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEec-----------------------------------------------
Confidence 7654 4666665 67899999988776544422
Q ss_pred eeeecCCcEEEEeccCccccCCCceEEEEEcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE---cCCE
Q 003217 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQ 471 (838)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~---dG~~ 471 (838)
+...|.+++|+|++ . |++|+.|++|++||+ ++++++.+ +|.+.|++|++ ++++
T Consensus 268 --------------------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 268 --------------------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp --------------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred --------------------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence 22345678898886 3 789999999999999 57776655 89999999975 5789
Q ss_pred EEEEeeCCeEEEEeCC
Q 003217 472 IWVGYMNGIVQVLDLE 487 (838)
Q Consensus 472 LasGs~DgtIrlWD~~ 487 (838)
|++|+.||+|++||+.
T Consensus 327 l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999985
No 49
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=1.1e-27 Score=258.79 Aligned_cols=239 Identities=10% Similarity=0.093 Sum_probs=187.5
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+...+|++|.+.|++|+|+|+|+ |+||+.||+|+|||++++.....+. .+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------~~---------- 54 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------VT---------- 54 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CC----------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-------------------cc----------
Confidence 45678999999999999999998 7899999999999997754322211 11
Q ss_pred cCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeee
Q 003217 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (838)
...+.++.+.+++..+++++ |++|++||+.+++++..+.+|...+..+.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~------------------------------ 104 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA------------------------------ 104 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE------------------------------
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE------------------------------
Confidence 34577788888888888877 57999999999999998887765443333
Q ss_pred eEeecCcceeeecCCcEEEEec--c-----CccccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEee-cC
Q 003217 390 GFFQRSRNAIMGAADAVRRVAA--K-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YL 458 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~--~-----g~~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-~H 458 (838)
|.+.+..+++|+.|+..++|. . ..+.+|...|.+++|+| ++. +++|+.|++|++||+ ++.+...+. +|
T Consensus 105 -~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp -ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred -EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 334444456666666666654 1 13456888999999998 554 899999999999999 566555554 56
Q ss_pred CccEEEEEE----cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 459 PFAVQCLCT----FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 459 ~~~V~sls~----dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
...|.++.+ ++.+|++|+.|++|++||++ ++++.++.+|...|.++++ ++.+++|+|.|++||+||+.++..
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 678888754 56799999999999999997 7889999999999999885 677899999999999999876543
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=4e-27 Score=260.54 Aligned_cols=270 Identities=15% Similarity=0.183 Sum_probs=199.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.. +..|.+ +.|++|+|||..+..... ....+ ...|.+++|+|+|..|++|+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~-~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMP-CTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------------EEECS-SSCCCEEEECTTSSEEEEES
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-------------------EEecC-CCCEEEEEECCCCCEEEEee
Confidence 45566654 446665 569999999986543221 11123 67899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++|++..... .........+.+|.+.|.+++|+|++. |+|||.|++|++||+++++....+.
T Consensus 126 ~d~~i~v~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------- 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKN--ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------- 193 (354)
T ss_dssp TTSEEEEEECCCCTT--CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred CCCCEEEEEEecccc--ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----------
Confidence 999999999875310 111234567789999999999999997 8999999999999997754332221
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
+| ...+.++.+.+ ++..+++++ |++|++||+++++++.++..|...+..+.
T Consensus 194 ---------~h----------~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~------- 247 (354)
T 2pbi_B 194 ---------GH----------GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR------- 247 (354)
T ss_dssp ---------CC----------SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-------
T ss_pred ---------CC----------CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE-------
Confidence 12 33566666654 356777776 68999999999999988877655433333
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccc--cCCCceEEEEEcCCCc-EEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGG 437 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~ala~S~dg~-l~Sgs 437 (838)
|.+++..++++..++..++|.. + .+. .+...+.+++|+|+|. |++|+
T Consensus 248 ------------------------~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 248 ------------------------YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp ------------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ------------------------EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 3333444455566665555541 1 111 1234678899999998 78999
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
.|++|++||+ +++++.++.+|.+.|+++++ +|++|++|+.|++|+||+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999 89999999999999999875 789999999999999996
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=5.1e-27 Score=257.86 Aligned_cols=243 Identities=17% Similarity=0.166 Sum_probs=180.9
Q ss_pred CCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc
Q 003217 191 VSSVMCMVG-----DE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 191 ~~~V~~la~-----s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (838)
..+|.|++| ++ ++++|+||+.|++|++||+..+... .........+.+|..+|++++|+|++. |+|||.|++
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 789999999 76 8999999999999999998764100 000133567899999999999999998 689999999
Q ss_pred EEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc
Q 003217 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 264 IrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg 342 (838)
||+||+.+++....+. +| ...+.++++++++..+++++ +++|++||+...
T Consensus 100 v~lwd~~~~~~~~~~~-------------------~h----------~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFV-------------------GH----------QSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EEEEETTSSCEEEEEE-------------------CC----------CSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred EEEEECCCCcEEEEEc-------------------CC----------CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 9999997754322221 12 45688899999888888877 689999998733
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
....+.. ...|...|
T Consensus 151 -~~~~~~~----------------------------------------------------------------~~~~~~~v 165 (343)
T 2xzm_R 151 -CKFSSAE----------------------------------------------------------------KENHSDWV 165 (343)
T ss_dssp -EEEECCT----------------------------------------------------------------TTSCSSCE
T ss_pred -ceeeeec----------------------------------------------------------------ccCCCcee
Confidence 2211110 00112223
Q ss_pred EEEEEcCCC-----------cEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-C
Q 003217 423 EALTTSIDG-----------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 423 ~ala~S~dg-----------~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g 488 (838)
.+++++|++ .+++|+.|++|++||.+++++.++.+|...|+++++ +|++|++|+.||+|+|||+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 334444432 489999999999999888888999999999999876 78999999999999999984 3
Q ss_pred c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 489 N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 489 ~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
. ....+ .|...|.++++ +++++ +++.|++|++|++.+...
T Consensus 246 ~~~~~~~-~~~~~v~~v~~sp~~~~l-a~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 246 TYPQREF-DAGSTINQIAFNPKLQWV-AVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp SSCSEEE-ECSSCEEEEEECSSSCEE-EEEESSCEEEEESSSCCS
T ss_pred cccceee-cCCCcEEEEEECCCCCEE-EEECCCCEEEEEeCCCCC
Confidence 3 34433 45567999986 44444 567799999999876543
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=260.56 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=182.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cc-ccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QA-HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~g-H~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
..+|.|++++|+ +|+||+.||+|++||+.++. ......+ .+ |.++|++|+|+|+|+ |+|||.|++||||
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 789999999986 99999999999999998741 1334445 44 999999999999998 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc-c--
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-E-- 343 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg-~-- 343 (838)
+++...... . ...... .+.+| ...|.++++++++..+++++ |++|++||+.+. +
T Consensus 86 ~~~~~~~~~-~--~~~~~~---------~~~~h----------~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 86 AKEESADRT-F--EMDLLA---------IIEGH----------ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EC--------C--CCEEEE---------EEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EcccCcCcc-c--cceeEE---------EEcCC----------CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 985421100 0 000000 11222 45788999999999998887 689999998532 1
Q ss_pred -EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 344 -LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 344 -~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
++.+ +..|...|
T Consensus 144 ~~~~~-------------------------------------------------------------------~~~h~~~v 156 (330)
T 2hes_X 144 ECISV-------------------------------------------------------------------LQEHSQDV 156 (330)
T ss_dssp EEEEE-------------------------------------------------------------------ECCCSSCE
T ss_pred EEEEE-------------------------------------------------------------------eccCCCce
Confidence 1111 22345567
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CC--CeeeEeecCCccEEEEEE--c--CCEEEEEeeCCeEEEEeCCC------
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F--GSQIWVGYMNGIVQVLDLEG------ 488 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~~V~sls~--d--G~~LasGs~DgtIrlWD~~g------ 488 (838)
.+++++|++. |++|+.|++|++||. ++ +++.++.+|...|.++++ + +.+|++|+.|++|+|||+.+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 7889999887 899999999999998 55 688999999999999976 3 56899999999999999752
Q ss_pred ---cccccccc-cccCEEEEEe-CCCEEEEEcCCCCeeeeecCC
Q 003217 489 ---NLLGGWVA-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 489 ---~~i~~l~g-H~~~V~sla~-dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+...+.+ |...|+++++ .+..++|++.|++|++|++..
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 34555655 9999999997 355899999999999999753
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=3.8e-27 Score=301.36 Aligned_cols=374 Identities=14% Similarity=0.127 Sum_probs=247.6
Q ss_pred CCCcCcccccCCCcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEec--CCEEEE-ecCCCEEEEeCCCCcc
Q 003217 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYD 163 (838)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~ 163 (838)
+++-..++..||.+|. ++-+-.........+..|. ..+.+++.+ ++.|.+ +.|+.|+|||+.+...
T Consensus 623 ~s~~~~~l~s~~~d~~----i~vw~~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKT----LQVFKAETGEKLLDIKAHE-------DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp ECTTSSEEEEEETTSC----EEEEETTTCCEEEEECCCS-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ECCCCCEEEEEeCCCe----EEEEECCCCCEEEEeccCC-------CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 4566778887777664 2222222222222333331 345566654 445665 5689999999986543
Q ss_pred ccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc
Q 003217 164 ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (838)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~ 241 (838)
... + ..| ..+|.|++|+| ++.++++|+.||+|++||+.++ +....+.+|.
T Consensus 692 ~~~-----------------~--~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--------~~~~~~~~h~ 743 (1249)
T 3sfz_A 692 VHT-----------------Y--DEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--------ECRNTMFGHT 743 (1249)
T ss_dssp EEE-----------------E--ECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--------SEEEEECCCS
T ss_pred EEE-----------------E--cCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--------chhheecCCC
Confidence 221 2 123 77999999999 5569999999999999999987 6778899999
Q ss_pred ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeec-------------------------CCCceee----------
Q 003217 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL-------------------------KPEERHT---------- 285 (838)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~-------------------------~~~~~~~---------- 285 (838)
++|++++|+|+|+ |++|+.||+|++||+.+......+ .+.....
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 9999999999998 789999999999998654321110 0000000
Q ss_pred --------------------eEEEE------------eec--eee---------cccce-eccceee-------------
Q 003217 286 --------------------AALIV------------ERS--YID---------LRSHL-SVNGFSS------------- 308 (838)
Q Consensus 286 --------------------~~~~~------------~~s--~~~---------l~~~~-~~~~~~~------------- 308 (838)
..+.. +.. .++ +.+|. .+..+..
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 00000 000 000 00000 0000000
Q ss_pred -------------------------------------------------------eecCCeEEEEEcCCCCEEEEeC-CC
Q 003217 309 -------------------------------------------------------ILTSDIKNLLSDHSRAKVWSAG-FL 332 (838)
Q Consensus 309 -------------------------------------------------------~~s~~v~~las~~~~~~V~s~s-~~ 332 (838)
.+...+.++++++++..+++++ ++
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 1122456666667677666665 46
Q ss_pred cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-
Q 003217 333 SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA- 411 (838)
Q Consensus 333 tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~- 411 (838)
.|++||+.+++.+..+.+|...+ ..+.|.+++...+++..++..++|.
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v-------------------------------~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAV-------------------------------RHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCC-------------------------------CCEEECSSSSCEEEECSSSBEEEEET
T ss_pred CEEEEEcCCCceeeecccCCCce-------------------------------EEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 78888888777766655443322 2344555555566666666666654
Q ss_pred -cC---ccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEE
Q 003217 412 -KG---GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 412 -~g---~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (838)
.+ .+..+...+.++++++++.+++++.|++|++||+ ++++++++.+|...|.++++ +|++|++|+.|++|++|
T Consensus 1033 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp TTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred CCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 11 2345677788888888888888888888888888 78888888888888887754 67888888888888888
Q ss_pred eCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 485 DLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 485 D~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|+. ++++..+.+|.+.|.++++ +++++++++.||+|++||+.+..+
T Consensus 1113 d~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp CSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred ECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 876 6788888888888888874 788888888888888888776543
No 54
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=261.31 Aligned_cols=277 Identities=14% Similarity=0.119 Sum_probs=202.6
Q ss_pred eeEEEEec--CCEEEEec-----CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC---C
Q 003217 134 FLRTIVCT--EEQLWAGG-----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---S 203 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~-----d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d---g 203 (838)
.+.+++.. +..++++. |+.|++||+.+..... .....+ ..+|.|++|+|+ +
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------------------~~~~~~-~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------------------LREIEK-AKPIKCGTFGATSLQQ 80 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------------------EEEEEE-SSCEEEEECTTCCTTT
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------------------eeeecc-cCcEEEEEEcCCCCCC
Confidence 46666665 33565533 8999999997643211 111123 779999999998 6
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEE------EecCCC-EEEeeCCCcEEEEECCCcce-e
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC------ISSYGD-LWSGSEGGGIKIWPWEAIEK-A 275 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~sla------fs~dG~-L~SgS~DgtIrvWd~~~~~~-~ 275 (838)
++|++|+.||+|++||+.++. .....+.+|.+.|+++. |+|+++ |++|+.|++|++||+.+... .
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred ceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence 999999999999999999862 26778899999999995 467887 78999999999999977542 2
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE----EcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL----SDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 276 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la----s~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
..+..... + ....+.+++ .++++..+++++ ++.|++||+++++++....
T Consensus 154 ~~~~~~~~----------------~---------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 207 (357)
T 3i2n_A 154 ANMEPVQG----------------E---------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN- 207 (357)
T ss_dssp EEECCCTT----------------S---------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred eeccccCC----------------C---------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-
Confidence 22111100 0 012455555 456677777776 5799999999877532211
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI- 429 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~- 429 (838)
+...+.+++++|
T Consensus 208 -------------------------------------------------------------------~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 208 -------------------------------------------------------------------IKNGVCSLEFDRK 220 (357)
T ss_dssp -------------------------------------------------------------------CSSCEEEEEESCS
T ss_pred -------------------------------------------------------------------CCCceEEEEcCCC
Confidence 112345677887
Q ss_pred --CCc-EEEEECCCeEEEEcC-CCCeeeEee-----cCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCC---------
Q 003217 430 --DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG--------- 488 (838)
Q Consensus 430 --dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-----~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g--------- 488 (838)
++. +++|+.||.|++||+ +++++..+. +|...|+++++ +|+ +|++|+.||.|++||+..
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 555 899999999999999 566555554 89999999865 566 899999999999999752
Q ss_pred -----------cccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeeecCCCC
Q 003217 489 -----------NLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSPG 529 (838)
Q Consensus 489 -----------~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrlWdl~s~~ 529 (838)
+++..+.+|...|.++++ ++++++ |++.|++|++|++.+..
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 357788999999999985 677887 89999999999987643
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=3.9e-27 Score=258.48 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=204.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|++++|++|+.||+|++||+.++. ++....+.+|...|++++|+|+|+ |++|+.|++|++||+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 7799999999999999999999999999998851 126778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE---E
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL---L 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~---l 345 (838)
.+.+...... +..+ ...+.++++++++..+++++ ++.|++||+.+++. .
T Consensus 82 ~~~~~~~~~~-----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 82 KGRTWKPTLV-----------------ILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp ETTEEEEEEE-----------------CCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCCeeeeeEE-----------------eecC----------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 6643211110 0011 34678888888888888877 57899999998762 2
Q ss_pred EEE-ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-------------
Q 003217 346 KVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------------- 411 (838)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------------- 411 (838)
..+ ..|...+.. +.+.+++..++++..++..+++.
T Consensus 135 ~~~~~~~~~~i~~-------------------------------~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 135 KHIKKPIRSTVLS-------------------------------LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp EEECTTCCSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred eeeecccCCCeeE-------------------------------EEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 222 222222222 33333333444444444433332
Q ss_pred -------cC----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEe
Q 003217 412 -------KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (838)
Q Consensus 412 -------~g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs 476 (838)
.+ .+..|...+.+++++|++. |++++.|++|++||+ +++++..+..|...|.++++ +|++|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence 01 2335677899999999986 899999999999999 79999999999999998865 67788877
Q ss_pred eCCeEEEEeCCC--c---cc------------------------------------ccc-cccccCEEEEE---eCC---
Q 003217 477 MNGIVQVLDLEG--N---LL------------------------------------GGW-VAHSSPVIKMA---VGA--- 508 (838)
Q Consensus 477 ~DgtIrlWD~~g--~---~i------------------------------------~~l-~gH~~~V~sla---~dg--- 508 (838)
.|+.|++||+.. . ++ ..+ .+|.+.|++++ .+|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 899999999754 1 10 233 59999999997 356
Q ss_pred CEEEEEcCCCCeeeeecCC
Q 003217 509 GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWdl~s 527 (838)
++++|++.||+|++|++.+
T Consensus 343 ~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred eeEEEecCCCceEEEEecC
Confidence 8999999999999999754
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-27 Score=249.88 Aligned_cols=266 Identities=17% Similarity=0.149 Sum_probs=205.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++| +++++|++|+.||+|++||+.++ +....+.+|.+.|++++|+|+++ |++|+.|+.|++|++
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 789999999 89999999999999999999886 56777889999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
....... ... .+.+| ...+.++.. ++..+++++ +++|++|| +++.+..+
T Consensus 89 ~~~~~~~-------~~~---------~~~~~----------~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 89 FATSGED-------PLY---------TLIGH----------QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TCCTTSC-------C-C---------EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred eecCCCC-------ccc---------chhhc----------ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 6532100 000 01111 345666666 345666665 68999999 66666666
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEeccC----cccc-CCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG----GFGD-DNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~g----~~~~-~~~~v 422 (838)
..+...... +.+.+ .+...+++..++..+++..+ .+.. +...+
T Consensus 139 ~~~~~~v~~-------------------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 139 QAHNASVWD-------------------------------AKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVV 187 (313)
T ss_dssp ECCSSCEEE-------------------------------EEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCE
T ss_pred ccCCCceeE-------------------------------EEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccE
Confidence 655433222 22222 23344555555555555421 2333 67789
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
.+++++|++.+++|+.|++|++||+ +++++..+.+|...|+++++ +| +|++|+.||.|++||++ ++++..+.+|.
T Consensus 188 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 188 RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 9999999999999999999999999 78999999999999999987 45 79999999999999987 78899999999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
..|.++++ +++ +++++.|+.|++|++...
T Consensus 267 ~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 267 ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 99999986 555 778999999999998754
No 57
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=294.37 Aligned_cols=168 Identities=10% Similarity=0.067 Sum_probs=117.5
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ +..|.+ +.|++|||||..+..... . ..+..+|.+|+|+| |++|+||+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--------------------~-~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--------------------K-LEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--------------------E-CSSCCCEEEEEEET-TTEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--------------------E-cCCCCCEEEEEEcC-CCEEEEEE
Confidence 45666665 335555 458999999976532210 1 11266899999999 88999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++||+.++ +.+..+. |.+.|++++|+|+|+ |++|+.||+|++||+.+.... .+......
T Consensus 77 ~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~----- 141 (902)
T 2oaj_A 77 AKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQ----- 141 (902)
T ss_dssp TTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHH-----
T ss_pred CcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccc-----
Confidence 9999999999987 5566664 778999999999998 789999999999999764321 10000000
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
.....+++| ...|.++++++.+ ..+++++ +++| +||++++++++++..+
T Consensus 142 --~~~~~~~~h----------~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 142 --KSSFFPAAR----------LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp --HHHTCSSSC----------CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred --ccccccccC----------CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 000011122 4467788888753 5666666 5678 9999999999888765
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=285.29 Aligned_cols=306 Identities=10% Similarity=-0.038 Sum_probs=194.2
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEECC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------SGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d------g~~LaSGs~DGtIrvWd~~ 221 (838)
+.|++|+|||+.+..... .....-..+ .+.|.+|+|+|+ +++||||+.||+||+||+.
T Consensus 180 s~D~tI~iWd~~~~~~~~---------------~~~~~l~~~-~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHC---------------VKVQTIVHS-FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp --CEEEEEEEEETTTCCE---------------EEEEEEEEC-CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred CCCceEEEEEccCCCCCc---------------eEEEEEEec-CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 568999999986532110 000001122 678999999996 5799999999999999998
Q ss_pred CCccCCC---CCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 222 ARLLDSD---DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 222 ~g~~~~~---~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
++.+... ...+....+.+|.++|++++|++++.|++||.||+|++||+.+...... .+.
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~------------------~~~ 305 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF------------------YDQ 305 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE------------------EEE
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE------------------Eee
Confidence 7521000 0011235788999999999999987799999999999999975422110 011
Q ss_pred cceeccceeeeecCCeEEE--EEcCCC-CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 299 SHLSVNGFSSILTSDIKNL--LSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~l--as~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
+| ...|.++ ++++++ ..+++++ |++|+|||+++++++.++.++...
T Consensus 306 ~H----------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------------------- 355 (524)
T 2j04_B 306 VH----------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------------------- 355 (524)
T ss_dssp CS----------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC--------------------
T ss_pred cc----------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc--------------------
Confidence 12 4467777 345555 6778877 689999999998876665433210
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~ 447 (838)
..+.++.|.+.+...+.+..++..+++. . .++.+|...|.+|+|+|+|. |+||+.|++|++||+
T Consensus 356 ---------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 356 ---------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ---------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ---------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 0011234555444455556665555554 1 13456888999999999997 799999999999999
Q ss_pred CCCeeeEeecC-----CccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEeCCC-----EEEEEc
Q 003217 448 NGNRLQDFQYL-----PFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAG-----YIFTLA 515 (838)
Q Consensus 448 ~g~~l~tl~~H-----~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~-----~l~S~S 515 (838)
.+++++.+..+ ...|.++++ +|+.+ ....+..+..|+.+|.++.++.+|...|++|+++++ .+++|+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp CSSTTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred hHhhccccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 66555443321 124666644 56644 222222233333457889999999999999997543 899999
Q ss_pred CCCCeeeeecCC
Q 003217 516 NHGGIRGWNVTS 527 (838)
Q Consensus 516 ~DgtIrlWdl~s 527 (838)
.||+||||++.-
T Consensus 506 ~~g~vrlw~l~~ 517 (524)
T 2j04_B 506 SAGLLTLEYLSL 517 (524)
T ss_dssp TTSEEEEEECSC
T ss_pred cCceEEEEEccc
Confidence 999999999764
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=4e-27 Score=261.46 Aligned_cols=284 Identities=11% Similarity=0.095 Sum_probs=212.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC----C---C-EEEeeCCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----G---D-LWSGSEGG 262 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d----G---~-L~SgS~Dg 262 (838)
.++|.|++|+| ++|++|+.||+|++|++.++. ....+.....+.+|..+|++++|+|+ | + |++|+.|+
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc--cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 78999999998 899999999999999998861 01112357788999999999999999 8 6 78999999
Q ss_pred cEEEEECCCcce-----eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc----CCCCE-EEEeC-C
Q 003217 263 GIKIWPWEAIEK-----ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAK-VWSAG-F 331 (838)
Q Consensus 263 tIrvWd~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~-V~s~s-~ 331 (838)
+|++|++.+... ...+. .+... .....+.++++. +++.. +++++ +
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~-------------------~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLD-------------------LLDSD-----MKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEEC-------------------CSCTT-----GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred CEEEEEccCCcccccccceeec-------------------ccccc-----cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 999999876432 11111 11000 002467788888 77877 77776 6
Q ss_pred CcEEEEeccC------ccEEE-----EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 332 LSFALWDART------RELLK-----VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 332 ~tI~lWD~~t------g~~l~-----~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
+.|++||+.+ ++.+. .+... .. ........+.++.+.+.+ .+++
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------~~~~~~~~i~~~~~~~~~-~l~~ 202 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGT------VE------------------SPMTPSQFATSVDISERG-LIAT 202 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE------EC------------------CSSSSCCCCCEEEECTTS-EEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeee------ec------------------cccCCCCCceEEEECCCc-eEEE
Confidence 7899999988 55433 22110 00 000112223345666666 6677
Q ss_pred ecCCcEEEEecc--C----cccc---C---CCceEEEEEcCCCc-EEEEECC---CeEEEEcC-CCCeeeEeec------
Q 003217 401 GAADAVRRVAAK--G----GFGD---D---NRRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQY------ 457 (838)
Q Consensus 401 g~~~~v~~v~~~--g----~~~~---~---~~~v~ala~S~dg~-l~Sgs~D---gtIrlWD~-~g~~l~tl~~------ 457 (838)
+..++..+++.. + .+.. | ...+.+++++|++. |++++.| +.|++||+ +++++..+.+
T Consensus 203 ~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 203 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 777777666651 1 2334 6 78899999999987 7899999 99999999 7899999998
Q ss_pred -------CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc------cc---------------ccCEEEEEe
Q 003217 458 -------LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV------AH---------------SSPVIKMAV 506 (838)
Q Consensus 458 -------H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~------gH---------------~~~V~sla~ 506 (838)
|...|.++++ +|++|++|+.||.|++||+. ++++..+. +| ...|.++++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 362 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 362 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence 9999999876 68899999999999999997 77888888 88 999999985
Q ss_pred --CC----------CEEEEEcCCCCeeeeecCC
Q 003217 507 --GA----------GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 --dg----------~~l~S~S~DgtIrlWdl~s 527 (838)
++ +++++++.|+.|++|++.+
T Consensus 363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 55 5899999999999999865
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-26 Score=257.54 Aligned_cols=287 Identities=12% Similarity=0.163 Sum_probs=208.3
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCccCCCCCcceeEEecc----------ccccEEEEEEecCCC-
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKM----NARLLDSDDGFGEVLSWQA----------HRGPVLSLCISSYGD- 254 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~----~~g~~~~~~~~~~~~~l~g----------H~~~V~slafs~dG~- 254 (838)
.++|.|++|+|+|+ +|++|+.||+|++|++ .++.. .-.......+.. |.+.|++++|+|+|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 67999999999999 9999999999999999 77510 000002333333 788999999999998
Q ss_pred EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCc
Q 003217 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLS 333 (838)
Q Consensus 255 L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~t 333 (838)
|++|+.|++|++||.. +.....+. +| ...+.++++.+++..+++++ ++.
T Consensus 123 l~~~~~dg~i~i~~~~-~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 123 IVTGVENGELRLWNKT-GALLNVLN-------------------FH----------RAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEEC-------------------CC----------CSCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEeCCCeEEEEeCC-CCeeeecc-------------------CC----------CccEEEEEECCCCCEEEEEecCCe
Confidence 7899999999999943 22211111 11 44678888888888888776 678
Q ss_pred EEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--
Q 003217 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-- 411 (838)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-- 411 (838)
|++||+.+++.+..+..+.......... ...........+.+.+.+ ..+++..++..+++.
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAE----------------NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp EEEEETTTTEEEEEECCC-------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred EEEEECCCCcEEEEeeccccCccceeec----------------cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 9999999999988876543210000000 000001112233444443 345666666555554
Q ss_pred c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEE
Q 003217 412 K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (838)
Q Consensus 412 ~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (838)
. ..+..|...|.+++++|++. +++++.|+.|++||+ +++++..+.+|...|.++++ +| ++++++.|+.|++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 1 12345778899999999986 889999999999999 68899999999999999876 56 9999999999999
Q ss_pred EeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 484 LDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 484 WD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
||+. ++++..+.+|...|.++++ +++++++++.|+.|++|++..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 9987 7888999999999999985 688999999999999999864
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.2e-26 Score=261.41 Aligned_cols=266 Identities=19% Similarity=0.272 Sum_probs=207.9
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~-V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.+. +.|+.+ +|++|++|+.||+|++||+.++ +....+.+|.++|++++|++ ..|++|+.||+|++||+
T Consensus 118 ~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 118 DDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNA 186 (445)
T ss_dssp TTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEEC
Confidence 444 567666 4799999999999999999987 67888999999999999983 35899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+++....+.. | ...+.++..+ +..+++++ +++|++||+.+++++..+
T Consensus 187 ~~~~~~~~~~~-------------------h----------~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 187 ETGECIHTLYG-------------------H----------TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTTEEEEEECC-------------------C----------SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CcCcEEEEECC-------------------C----------CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 77543322221 1 3356666664 34566655 689999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (838)
..|...+..+.+ ++..++++..++..+++. . ..+..|...|
T Consensus 236 ~~~~~~v~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 236 MGHVAAVRCVQY---------------------------------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ECCSSCEEEEEE---------------------------------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred cCCcccEEEEEE---------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 766543322221 122344555555544443 1 1344577788
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccc---c
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA---H 497 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g---H 497 (838)
.++.+ .+..+++|+.|++|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. ++++..+.+ |
T Consensus 283 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 283 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred EEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence 88888 3345899999999999999 7999999999999999999999999999999999999986 777888776 8
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
...|.+++++++++++++.||+|++||+.+...+.
T Consensus 362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 99999999999999999999999999988765443
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.2e-28 Score=265.70 Aligned_cols=267 Identities=10% Similarity=0.036 Sum_probs=188.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|+|++|++|+.||+|++||+.++. .+....+.+|.++|++++|+|+|+ |++|+.|++|++||+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 6799999999999999999999999999998751 134567889999999999999997 899999999999999
Q ss_pred CCcc---eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-
Q 003217 270 EAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (838)
Q Consensus 270 ~~~~---~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~- 344 (838)
.+.. ....+ ..| ...+.++++++++..+++++ +++|++||+.+++.
T Consensus 85 ~~~~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 85 RPDGTWKQTLVL-------------------LRL----------NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp ----CCCCEEEC-------------------CCC----------SSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred CCCCceeeeeEe-------------------ccc----------CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 7643 11111 111 45688888888888887776 67899999998873
Q ss_pred --EEEEec-CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec----------
Q 003217 345 --LKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---------- 411 (838)
Q Consensus 345 --l~~l~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---------- 411 (838)
++.+.. |...+..+.+++. +..++++..++..+++.
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~-------------------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPN-------------------------------NVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTT-------------------------------SSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred eeeeEeecccCCCeEEEEEcCC-------------------------------CCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 555654 4444444444432 22233333333222222
Q ss_pred --------------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCe----eeEeecCCccEEEEEE--cC
Q 003217 412 --------------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR----LQDFQYLPFAVQCLCT--FG 469 (838)
Q Consensus 412 --------------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~----l~tl~~H~~~V~sls~--dG 469 (838)
...+ .|...|.+++++|+|. |++|+.|++|++||+ ++++ +.++.+|...|.++++ +|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 0123 6777899999999997 899999999999999 6777 8899999999998854 78
Q ss_pred CEEEEEeeCCeEEEEeCC--C-cccc--------------------------------------------------cccc
Q 003217 470 SQIWVGYMNGIVQVLDLE--G-NLLG--------------------------------------------------GWVA 496 (838)
Q Consensus 470 ~~LasGs~DgtIrlWD~~--g-~~i~--------------------------------------------------~l~g 496 (838)
++|++|+.|+.+ +|+.. + ++.. ...+
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 899998877766 66543 2 1111 1123
Q ss_pred cccCEEEEEe---CCC---EEEEEcCCCCeeeeec
Q 003217 497 HSSPVIKMAV---GAG---YIFTLANHGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~---dg~---~l~S~S~DgtIrlWdl 525 (838)
|.+.|++|.+ ++. .++|+|.||+||+||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9999999974 233 6999999999999985
No 63
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.1e-26 Score=253.59 Aligned_cols=273 Identities=14% Similarity=0.118 Sum_probs=191.8
Q ss_pred eEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+..++.+ +..|.+ +.|++|||||+.+...... ......| ..+|.|++|+|+|++|+||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h-~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGH-QRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------EEECSSC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------eeecccc-CCcEEEEEECCCCCEEEEEEC
Confidence 4445544 445655 5699999999865321100 0001123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|++|++|+..++. .+....+.+|.++|++|+|+|+|+ |+|||.|++|++||+.+...... ..
T Consensus 82 D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-------~~---- 144 (345)
T 3fm0_A 82 DATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-------VS---- 144 (345)
T ss_dssp TSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-------EE----
T ss_pred CCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-------EE----
Confidence 9999999988752 245677899999999999999998 78999999999999865321100 00
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE--EEEEecCCceEEeeecccCcccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~--l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
.+.+| ...+..+++++++..+++++ +++|++||..+++. +.++.+|...+..+.+++...
T Consensus 145 -----~~~~h----------~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-- 207 (345)
T 3fm0_A 145 -----VLNSH----------TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-- 207 (345)
T ss_dssp -----EECCC----------CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS--
T ss_pred -----EecCc----------CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC--
Confidence 01112 45688889988888888877 67999999998763 456666665555555554332
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---------------------Cccc-cCCCceEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------------------GGFG-DDNRRTEAL 425 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------------------g~~~-~~~~~v~al 425 (838)
.+++++.|+..++|.. ..+. .|...|.++
T Consensus 208 -----------------------------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 258 (345)
T 3fm0_A 208 -----------------------------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258 (345)
T ss_dssp -----------------------------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE
Confidence 2233333332222210 0112 266789999
Q ss_pred EEcCCCc-EEEEECCCeEEEEcCC-CC---------eeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC
Q 003217 426 TTSIDGM-IWTGGANGLLLQWDPN-GN---------RLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 426 a~S~dg~-l~Sgs~DgtIrlWD~~-g~---------~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~ 487 (838)
++++++. |++++.|++|++|+.. +. ..+.+.+|...|++|++ ++ .+|++|+.||+|++|++.
T Consensus 259 ~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 9999876 8999999999999983 32 12234589999999976 45 499999999999999987
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=6.9e-28 Score=273.81 Aligned_cols=273 Identities=12% Similarity=0.084 Sum_probs=189.4
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvW 267 (838)
...|+||+|+| ++.+||+|+.||+|++||+.++. ......+.||.++|++|+|+| ++. |+|||.||+||+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 66899999999 56799999999999999998752 134456789999999999998 566 8999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|+++......... +. ....+.++++++++..|++++ +++|++||+++. .+.
T Consensus 193 d~~~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~ 244 (435)
T 4e54_B 193 DFKGNILRVFASS-------------------DT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW 244 (435)
T ss_dssp ETTSCEEEEEECC-------------------SS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC
T ss_pred eccCCceeEEecc-------------------CC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE
Confidence 9975322111100 00 012345567778888888887 578999998754 344
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEec------cCc---cc
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA------KGG---FG 416 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~------~g~---~~ 416 (838)
++.+|...+..+ .|.+.+. .++++..++..++|. ... ..
T Consensus 245 ~~~~h~~~v~~v-------------------------------~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 245 NLRMHKKKVTHV-------------------------------ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp CSBCCSSCEEEE-------------------------------EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEecccceEEee-------------------------------eecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 555544433333 3333332 233455555555543 111 23
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCcc-------EEE-EEEcCCEEEEEe----------
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA-------VQC-LCTFGSQIWVGY---------- 476 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~-------V~s-ls~dG~~LasGs---------- 476 (838)
.|...|.+++|+|||. |++|+.|++|++||+ +++++..+..|... +.+ ..+++..++++.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 5778899999999987 899999999999999 78888887766532 111 122344444443
Q ss_pred --eCCeEEEEeCC-Ccccccc-cccccCEEEEE---eCCCEEEEEcCCCCeeeeecCCCC
Q 003217 477 --MNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 477 --~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla---~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
.+++|++||.. |+++..+ .+|...|.++. ++|++|+||+ |++|++|+++...
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 45789999987 7776665 57888888863 4788999887 7899999987643
No 65
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=3.2e-26 Score=268.68 Aligned_cols=307 Identities=16% Similarity=0.140 Sum_probs=227.7
Q ss_pred EecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCC-eEEEEEcC--CCCEEEEEeCCCcE
Q 003217 139 VCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDE--ASGVVWSGHRDGRI 215 (838)
Q Consensus 139 ~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~-V~~la~s~--dg~~LaSGs~DGtI 215 (838)
..+++.|.++.++.|+|||+.+..... ........| ..+ |.|++|+| ++++|++|+.||+|
T Consensus 27 spdg~~l~~~~~~~v~v~~~~~~~~~~---------------~~~~~~~~h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 27 DPTTNAIAYPCGKSAFVRCLDDGDSKV---------------PPVVQFTGH-GSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp ETTTTEEEEEETTEEEEEECCSSCCSS---------------CSEEEECTT-TTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCCCCEEEEecCCeEEEEECCCCCCcc---------------ccceEEecC-CCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 344667777789999999997641100 000111123 778 99999999 99999999999999
Q ss_pred EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC----CcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
++||+.++........+....+.+|..+|++++|+|+|+ |++++.| +.|++||. ......+.
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~----------- 157 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS----------- 157 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECC-----------
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeee-----------
Confidence 999996430000000145667889999999999999998 7888887 68888884 22221111
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccEEEEEecCCc---eEEeeecccCcc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPD 365 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~ 365 (838)
+| ...+.++++.+++. .+++++ +++|++||+.+++++..+..|.. .+.
T Consensus 158 --------~~----------~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~--------- 210 (615)
T 1pgu_A 158 --------GH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR--------- 210 (615)
T ss_dssp --------SC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE---------
T ss_pred --------cC----------CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE---------
Confidence 12 44678888888776 677666 67999999999999888876543 222
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeec-CcceeeecCCcEEEEec--cC----cc-c---cCCCceEEEEEcCCCc-E
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVAA--KG----GF-G---DDNRRTEALTTSIDGM-I 433 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~~v~~--~g----~~-~---~~~~~v~ala~S~dg~-l 433 (838)
++.|.++ +..++++..++..+++. .+ .+ . .|...|.+++++ ++. +
T Consensus 211 ----------------------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 211 ----------------------DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp ----------------------EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred ----------------------EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEE
Confidence 2344444 44555666666555554 11 23 3 677889999999 776 8
Q ss_pred EEEECCCeEEEEcC-CCCeeeEeecC----CccEEEEEE-cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 434 WTGGANGLLLQWDP-NGNRLQDFQYL----PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~-~g~~l~tl~~H----~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
++++.|++|++||+ +++++..+..| ...+.++.+ ++.++++|+.|+.|++||+. ++++..+.+|.+.|.++++
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 89999999999999 68899998877 356666654 88999999999999999998 6788999999999999999
Q ss_pred CCCEEEEEcCCCCeeeeecC
Q 003217 507 GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~ 526 (838)
+. +++++.|+.|++|++.
T Consensus 348 -~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 -NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TT-TEEEETTSCEEETTTT
T ss_pred -cC-cEEECCCCeEEEEEch
Confidence 88 9999999999999975
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.3e-26 Score=256.77 Aligned_cols=274 Identities=18% Similarity=0.214 Sum_probs=205.7
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+..+..++..+++ +.|+.|++||+.+...... + ...+ ..+|.|++|+|++++|++|+.||
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------~-~~~~-~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------A-ETDE-STYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------E-ECCT-TCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------e-ecCC-CCCEEEEEECCCCCEEEEECCCC
Confidence 3345555565555 6799999999976543211 1 1113 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
.|++||+.++ +....+.+|.+.|.+++|++ ..|++|+.|++|++||+.........
T Consensus 157 ~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--------------- 212 (401)
T 4aez_A 157 LVDIYDVESQ--------TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGT--------------- 212 (401)
T ss_dssp CEEEEETTTC--------CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEE---------------
T ss_pred eEEEEECcCC--------eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeE---------------
Confidence 9999999987 67788999999999999943 24889999999999999742221100
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
+.+| ...+.++++++++..+++++ +++|++||+++++++..+..
T Consensus 213 ---~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------------- 257 (401)
T 4aez_A 213 ---LQGH----------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------------- 257 (401)
T ss_dssp ---EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC----------------------
T ss_pred ---EcCC----------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC----------------------
Confidence 1112 45678888888888888877 58999999998776554432
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEE--CCCeEEEEcC-
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGG--ANGLLLQWDP- 447 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs--~DgtIrlWD~- 447 (838)
|...|.+++++|++. +++|+ .|++|++||+
T Consensus 258 ---------------------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 258 ---------------------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp ---------------------------------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred ---------------------------------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 122345677888653 45554 6999999999
Q ss_pred CCCeeeEeecCCccEEEEEE--cCCEEEE--EeeCCeEEEEeCC-Ccc--cccccccccCEEEEEe--CCCEEEEEcCCC
Q 003217 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWV--GYMNGIVQVLDLE-GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~--dG~~Las--Gs~DgtIrlWD~~-g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (838)
+++++.++. |...|.++++ +|++|++ |+.||.|++||+. ++. ...+.+|...|.++++ +++++++++.|+
T Consensus 293 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 293 TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 788888886 5678998875 6888988 5589999999987 433 4457899999999885 788999999999
Q ss_pred CeeeeecCCCCCCc
Q 003217 519 GIRGWNVTSPGPLD 532 (838)
Q Consensus 519 tIrlWdl~s~~~~d 532 (838)
+|++|++.....+.
T Consensus 372 ~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 372 NLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEECCC-----
T ss_pred cEEEEECCCCcccc
Confidence 99999998755433
No 67
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=3.9e-27 Score=262.92 Aligned_cols=279 Identities=18% Similarity=0.227 Sum_probs=199.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ ++.|.+ +.|++|+|||+.+...... + ..| ..+|.+++|+|+|++|++|+
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA-----------------I--KLH-CPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-CTTCCCCEECTTSSEEEECC
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE-----------------E--ecC-CCCEEEEEECCCCCEEEEee
Confidence 46666654 445665 5699999999876433211 1 233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
.|++|++|++.+... ..........+.||.+.|.++.|+|++ .|+|||.|++|++||+.++.....+....
T Consensus 128 ~d~~v~iw~~~~~~~-~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~------ 200 (380)
T 3iz6_a 128 LDSACSIFNLSSQAD-RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF------ 200 (380)
T ss_dssp SSSCCEEEECCCCSS-CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS------
T ss_pred CCCcEEEEECCCCcc-ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc------
Confidence 999999999976420 011122345678999999999999975 38999999999999998765432221100
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEecc-CccEEEEEecCCceEEeeecccCcc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
..+| ...+.++...+ ++..+++++ |++|++||++ +++++.++.+|...+..
T Consensus 201 --------~~~h----------~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~-------- 254 (380)
T 3iz6_a 201 --------PSGH----------TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS-------- 254 (380)
T ss_dssp --------SSSC----------CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE--------
T ss_pred --------CCCC----------ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE--------
Confidence 0011 44677777755 566777776 6899999998 45666677665443222
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Cc----cc-------cCCCceEEEEEcCCCc
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG----FG-------DDNRRTEALTTSIDGM 432 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~----~~-------~~~~~v~ala~S~dg~ 432 (838)
+.|.+++...++++.|+..++|.. +. +. .+...|.+++|+|+|.
T Consensus 255 -----------------------v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 255 -----------------------VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp -----------------------EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred -----------------------EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 344444555566666666666541 11 11 1223478999999998
Q ss_pred -EEEEECCCeEEEEcC-CCCeeeEe----ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC
Q 003217 433 -IWTGGANGLLLQWDP-NGNRLQDF----QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~tl----~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (838)
|++|+.||+|++||. .++++..+ .+|.+.|+++++ +|++|++|+.|++|+|||+.+
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 789999999999999 78888777 689999999865 789999999999999999874
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.9e-27 Score=265.36 Aligned_cols=280 Identities=13% Similarity=0.158 Sum_probs=197.0
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA---RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~---g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
.++|.|++|+| ++++|+||+.||+|++||+.+ +. ..+....+ +|.++|++|+|+|++. |++|+.|++|+
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999999 999999999999999999876 31 11223333 6999999999999998 78999999999
Q ss_pred EEECC---CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE--EcCCCCEEEEeC-CCcEEEEec
Q 003217 266 IWPWE---AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL--SDHSRAKVWSAG-FLSFALWDA 339 (838)
Q Consensus 266 vWd~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la--s~~~~~~V~s~s-~~tI~lWD~ 339 (838)
+||++ ++........+ ....+ .+.. .+ ....+.++. ..+++..+++++ +++|++||+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~-------~~~~----~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKI-------NLKN----FG----KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEE-------EGGG----GS----SCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEeccccCCceeeccccc--eeEEE-------EccC----cc----cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99985 22211111100 11100 0000 00 122344444 345666777776 589999999
Q ss_pred cCccEEEEEec--CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC--
Q 003217 340 RTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-- 413 (838)
Q Consensus 340 ~tg~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-- 413 (838)
++++++.++.. |...+. ++.|.+.+..+++|..++..++|. .+
T Consensus 200 ~~~~~~~~~~~~~h~~~v~-------------------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVS-------------------------------SICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp TTCCEEEEEECCGGGCCEE-------------------------------EEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCCeeeEEEccCCCCCceE-------------------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 99999888875 222222 234444455566677777666654 11
Q ss_pred --ccc-cCCCceEEEE----EcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC--------------------------
Q 003217 414 --GFG-DDNRRTEALT----TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------- 458 (838)
Q Consensus 414 --~~~-~~~~~v~ala----~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H-------------------------- 458 (838)
.+. .+...|.+++ +++++. +++|+.|++|++||+ ++++++++.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 222 4566788885 445675 789999999999999 68888888754
Q ss_pred CccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Ccccccccc-------------------------------------ccc
Q 003217 459 PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-------------------------------------HSS 499 (838)
Q Consensus 459 ~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-------------------------------------H~~ 499 (838)
...|+++++ ++++|++|+.|++|++||+. ++++..+.+ |.+
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 445777765 56699999999999999987 666666655 899
Q ss_pred CEEEEEe--C--CCEEEEEcCCCCeeeee
Q 003217 500 PVIKMAV--G--AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 500 ~V~sla~--d--g~~l~S~S~DgtIrlWd 524 (838)
.|++|++ + +.+++||+.||+|++|+
T Consensus 409 ~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999874 4 55899999999999995
No 69
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.9e-25 Score=240.90 Aligned_cols=267 Identities=15% Similarity=0.189 Sum_probs=195.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.. +..|.+ +.|+.|++||+.+...... + ..| ..+|.+++|+|++++|++|+
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~s~~ 84 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----------------I--SGH-KLGISDVAWSSDSNLLVSAS 84 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-----------------h--ccC-CCceEEEEEcCCCCEEEEEC
Confidence 46666665 345555 5699999999865432211 1 123 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+|++||+.++ +....+++|...|.+++|+|++. |++|+.|++|++||+.+++....+..
T Consensus 85 ~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------- 147 (312)
T 4ery_A 85 DDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA--------- 147 (312)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---------
T ss_pred CCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---------
Confidence 9999999999987 67788999999999999999998 78999999999999976543222211
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
| ...+..+++++++..+++++ ++.|++||+++++++..+..+..
T Consensus 148 ----------~----------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------------- 192 (312)
T 4ery_A 148 ----------H----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--------------- 192 (312)
T ss_dssp ----------C----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC---------------
T ss_pred ----------C----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------
Confidence 1 34577788888888888776 67899999999988776532111
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCc---eEEEEEcCCCc-EEEEEC
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRR---TEALTTSIDGM-IWTGGA 438 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~---v~ala~S~dg~-l~Sgs~ 438 (838)
.....+.+.+++..++.+..++..+++. .+ .+..+... +......+++. +++|+.
T Consensus 193 ---------------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 193 ---------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp ---------------CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT
T ss_pred ---------------CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC
Confidence 0111234444455556666666666654 11 12223222 22233335555 889999
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEe--eCCeEEEEeCC
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE 487 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs--~DgtIrlWD~~ 487 (838)
||+|++||+ ++++++++.+|...|.++++ ++.+|++++ .|++|++|+.+
T Consensus 258 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999 78999999999999999876 678999987 59999999864
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=1.5e-26 Score=256.64 Aligned_cols=267 Identities=10% Similarity=0.054 Sum_probs=197.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--eccccccEEEEEEec-CCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~--l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (838)
..+|.|++|+|++ ++|++|+.||+|++||+.++ +.... +.+|.+.|++++|+| ++. |++|+.|++|+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 7799999999999 99999999999999999986 33333 358999999999999 555 78999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
+||+.+.. ...+... .. ....+.++++++++..+++++ +++|++||+ +++.
T Consensus 145 iwd~~~~~-~~~~~~~----------------~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKT----------------DS----------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEETTSCE-EEEEECC----------------CC----------SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred EEECCCCc-eEEEecc----------------CC----------CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 99997421 1111000 00 124578888888888888877 578999999 5777
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEecc------Ccc--
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAK------GGF-- 415 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~------g~~-- 415 (838)
+..+..|...+..+. +.+.+. .++++..++..+++.. +.+
T Consensus 197 ~~~~~~h~~~v~~~~-------------------------------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAE-------------------------------FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EEEEECSSSCEEEEE-------------------------------ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred EEEeccCCCcEEEEE-------------------------------ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 777776654433333 333333 3455555655555541 111
Q ss_pred -ccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc-----------------cEEEE--EEcCCEE
Q 003217 416 -GDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----------------AVQCL--CTFGSQI 472 (838)
Q Consensus 416 -~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-----------------~V~sl--s~dG~~L 472 (838)
..|...|.+++++| ++. |++++.|++|++||+ ++++++++.+|.. .+.++ +++|++
T Consensus 246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 24677899999999 887 789999999999999 6888888876642 22233 345655
Q ss_pred EEEeeCCeEEEEeCC-Ccccccccc--cccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 473 WVGYMNGIVQVLDLE-GNLLGGWVA--HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~g--H~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+|+.|++|++||+. ++++..+.+ |...|..++ +++++|++++ |++|++|++.+
T Consensus 325 -s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 -LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77899999999987 788888887 456676656 4788999997 99999999864
No 71
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=8.9e-27 Score=250.80 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (838)
..+|.|++|+|++++|++|+.||+|++||+.++. ...+....+.+|.++|++|+|+| |++ |++|+.|++|++|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 7899999999999999999999999999998752 22235567889999999999999 576 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.+......... ..... .+..| ...+.++++.++ +..+++++ +++|++||+++++.
T Consensus 87 d~~~~~~~~~~~~-~~~~~---------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 87 EEDPDQEECSGRR-WNKLC---------TLNDS----------KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EECTTSCTTSSCS-EEEEE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ecCCCcccccccC-cceee---------eeccc----------CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 9976432110000 00000 01111 456888888887 77777776 67899999998876
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+..+...... . .. .+ ....+...+.+
T Consensus 147 ~~~~~~~~~~----~-------------------~~---------~~----------------------~~~~~~~~~~~ 172 (351)
T 3f3f_A 147 LRSWTLTSEM----K-------------------VL---------SI----------------------PPANHLQSDFC 172 (351)
T ss_dssp TTCCEEEEEE----E-------------------SC---------SC----------------------CCSSCSCCCEE
T ss_pred hccccccccc----c-------------------cc---------cc----------------------ccCCcccceeE
Confidence 4333211000 0 00 00 00122334455
Q ss_pred EEEcCC---Cc-EEEEECCCeEEEEcC-CCC--eeeEeecCCccEEEEEE--cC----CEEEEEeeCCeEEEEeCC----
Q 003217 425 LTTSID---GM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLE---- 487 (838)
Q Consensus 425 la~S~d---g~-l~Sgs~DgtIrlWD~-~g~--~l~tl~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~---- 487 (838)
++++|+ +. +++++.|+.+.+|+. .++ ++..+.+|...|+++++ +| ++|++|+.||+|++||+.
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 556554 33 566666666655555 333 25556666666666654 34 466666666666666654
Q ss_pred -------------------------------------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeee
Q 003217 488 -------------------------------------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (838)
Q Consensus 488 -------------------------------------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrl 522 (838)
.+++..+.+|.+.|+++++ ++++|+|++.|++|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 2567888999999999985 6889999999999999
Q ss_pred eecCCCCC
Q 003217 523 WNVTSPGP 530 (838)
Q Consensus 523 Wdl~s~~~ 530 (838)
|++.+...
T Consensus 333 w~~~~~~~ 340 (351)
T 3f3f_A 333 WKATYSNE 340 (351)
T ss_dssp EEECTTSC
T ss_pred EecCcCcc
Confidence 99876543
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=256.90 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=194.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-------------ccccccEEEEEEec-CCC-
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-------------QAHRGPVLSLCISS-YGD- 254 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-------------~gH~~~V~slafs~-dG~- 254 (838)
.++|.|++|+| ++++|++|+.||+|++||+.++. ....+ .+|.++|++++|+| ++.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS--------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc--------ccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 78999999999 99999999999999999999863 11111 36999999999999 554
Q ss_pred EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC---CCCEEEEeC-
Q 003217 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG- 330 (838)
Q Consensus 255 L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~---~~~~V~s~s- 330 (838)
|++|+.|++|++||+.+.+....+.. ...+..+...+ ++..+++++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNF------------------------------EETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEECSSCSSCCEEEEEES
T ss_pred EEEEeCCCeEEEeeCCCCccceeccC------------------------------CCceeeeEeecCCCCCcEEEEEcC
Confidence 89999999999999977543222110 12233444433 333566655
Q ss_pred CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
++.|++||+.+++++..+..|...+..+.+++.... .++++..++..+++
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY------------------------------ILATASADSRVKLW 214 (408)
T ss_dssp SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT------------------------------EEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc------------------------------EEEEEcCCCcEEEE
Confidence 578999999999988888766554444444432221 12334444433333
Q ss_pred cc----------------------CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc-----c
Q 003217 411 AK----------------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----A 461 (838)
Q Consensus 411 ~~----------------------g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-----~ 461 (838)
.. ..+..|...|.+++++|++. +++++.|+.|++||+ +++.+..+..+.. .
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 215 DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 20 11235677899999999997 899999999999999 6766555443221 1
Q ss_pred E-EEEEE-cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCch
Q 003217 462 V-QCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 462 V-~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
+ ..+.. .+..+++++.|+.|++||+. ++++..+.+|.+.|.++++ ++++|++++.||.|++|++.+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 1 12222 35577777899999999987 7889999999999999885 788999999999999999988766543
No 73
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=9.4e-26 Score=245.55 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=189.0
Q ss_pred eeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~-~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.+.+++.. + +.|.+ +.|++|++||+....... ..+.. ...| ..+|.+++|+|+|++|+|
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------~~~~~~~~~h-~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------GVPVRSFKGH-SHIVQDCTLTADGAYALS 82 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------------EEEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------------cccceEEeCC-cccEEEEEECCCCCEEEE
Confidence 45566654 2 35555 569999999985321100 00111 1123 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
|+.|++||+||+.++ +....+.+|.+.|.+++|+|++. |+|||.|++||+||+... +...+..
T Consensus 83 ~s~D~~v~~wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~------- 146 (319)
T 3frx_A 83 ASWDKTLRLWDVATG--------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLG------- 146 (319)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECC-------
T ss_pred EeCCCEEEEEECCCC--------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEec-------
Confidence 999999999999997 67788999999999999999998 789999999999998542 1111111
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcC------CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH------SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~------~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
| ...+..+.+.+ ++..+++++ +++|++||++++++...+.+|...+..
T Consensus 147 ------------h----------~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~--- 201 (319)
T 3frx_A 147 ------------H----------NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT--- 201 (319)
T ss_dssp ------------C----------SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEE---
T ss_pred ------------c----------CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEE---
Confidence 1 22344444433 234566665 689999999999888777666543333
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Ccc---ccCCCceEEEEEcCCCcEEE
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGF---GDDNRRTEALTTSIDGMIWT 435 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~---~~~~~~v~ala~S~dg~l~S 435 (838)
+.+.+++..++++..++..++|.. +.. ......|.+++|+|++.+++
T Consensus 202 ----------------------------~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 202 ----------------------------LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp ----------------------------EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred ----------------------------EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence 344444555566777776666651 111 12345788999999999655
Q ss_pred EECCCeEEEEcCC-CCeeeEee--------cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 436 GGANGLLLQWDPN-GNRLQDFQ--------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 436 gs~DgtIrlWD~~-g~~l~tl~--------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
++.++.+++|+++ +..+..+. .|...|.++++ ||++|++|+.||+|+|||+.
T Consensus 254 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 5556669999994 55555553 34567888765 79999999999999999975
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=4.9e-26 Score=259.26 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=189.4
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~-V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
..+ +.|+.++ +++|+||+.||+|++||+.++ +....+.+|.++|++++|++++.|+||+.||+|++||+
T Consensus 121 ~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 121 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 444 5787775 579999999999999999987 67888999999999999999998899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc--CCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~--~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
.+++....+.. | ...+.++++. +++..+++++ +++|++||+.++....
T Consensus 191 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 191 KKGCCTHVFEG-------------------H----------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp TTTEEEEEECC-------------------C----------SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CCCcEEEEECC-------------------C----------CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 87543322221 1 3456666655 3556666666 6899999998876533
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
........ .. ... .+....... ..+.+|...+.++
T Consensus 242 ~~~~~~~~------------------~~-~~~-------------~~~~~~~~~------------~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 242 DHGEEHDY------------------PL-VFH-------------TPEENPYFV------------GVLRGHMASVRTV- 276 (464)
T ss_dssp -----CCS------------------SE-EES-------------CGGGCTTEE------------EEECCCSSCEEEE-
T ss_pred cccccCCc------------------ce-Eee-------------ccCCCeEEE------------EEccCccceEEEE-
Confidence 22111000 00 000 000000000 0123444555555
Q ss_pred EcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCE
Q 003217 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (838)
Q Consensus 427 ~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (838)
++++. +++|+.|++|++||+ +++++.++.+|...|.++++ +|++|++|+.||+|++||+. ++++.++.+|...|
T Consensus 277 -~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp -EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred -cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 34454 899999999999999 78999999999999999865 68899999999999999986 88999999999999
Q ss_pred EEEEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 502 IKMAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 502 ~sla~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
.++.++++++++++.|++|++||+..+
T Consensus 356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999999998764
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-26 Score=249.05 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=182.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
.++|.|++|+|++++|++|+.||+|++|++..+. .+....+.+|.++|++|+|+++ ++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 7899999999999999999999999999997431 1556778999999999999977 76 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++...... .+..| ...+.++++.++ +..+++++ +++|++||+.++..
T Consensus 85 d~~~~~~~~~~-----------------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 85 KEENGRWSQIA-----------------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEETTEEEEEE-----------------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EcCCCceeEee-----------------eecCC----------CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 99764311100 00111 446788888887 77777776 67899999987632
Q ss_pred EE--EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 345 LK--VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 345 l~--~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
.. .+. .|...|
T Consensus 138 ~~~~~~~-------------------------------------------------------------------~~~~~v 150 (379)
T 3jrp_A 138 TSPIIID-------------------------------------------------------------------AHAIGV 150 (379)
T ss_dssp CCEEEEE-------------------------------------------------------------------CCTTCE
T ss_pred eeeEEec-------------------------------------------------------------------CCCCce
Confidence 11 111 122233
Q ss_pred EEEEEcC-------------CCc-EEEEECCCeEEEEcC-CCC----eeeEeecCCccEEEEEE--c---CCEEEEEeeC
Q 003217 423 EALTTSI-------------DGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~-------------dg~-l~Sgs~DgtIrlWD~-~g~----~l~tl~~H~~~V~sls~--d---G~~LasGs~D 478 (838)
.+++++| ++. +++|+.|++|++||+ .++ ++..+.+|...|.++++ + +++|++|+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 3444444 455 899999999999999 453 55778899999999875 5 7899999999
Q ss_pred CeEEEEeCCC-c-----ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 479 GIVQVLDLEG-N-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 479 gtIrlWD~~g-~-----~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
|+|++||+.. + .+.....|...|+++++ +++++++++.|+.|++|++..
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999999873 2 24444569999999985 788999999999999999864
No 76
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1e-25 Score=245.70 Aligned_cols=267 Identities=15% Similarity=0.169 Sum_probs=192.7
Q ss_pred CCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~d---g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (838)
.++|.|++|+|+ |++|++|+.||+|++||+.+.. ......+.+|.++|++++|+|+|+ |++|+.|++|++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 789999999999 6999999999999999998721 023367889999999999999998 789999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE--cCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS--DHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las--~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
||+.+..... .. .| ...+.+++. .+++..+++++ +++|++||+++++
T Consensus 113 wd~~~~~~~~-~~-------------------~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQ-IA-------------------QH----------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEE-EE-------------------EC----------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred EEcCCCCcee-ec-------------------cc----------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 9997643211 00 11 345777777 66777777766 6889999999999
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-cC-------cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG-------GF 415 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g-------~~ 415 (838)
++..+..+.... ....... ..+++..++...++. .. ..
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 163 PMMVLQLPERCY-CADVIYP---------------------------------MAVVATAERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp CSEEEECSSCEE-EEEEETT---------------------------------EEEEEEGGGCEEEEECSSSCEEEEECC
T ss_pred EEEEEecCCCce-EEEecCC---------------------------------eeEEEeCCCcEEEEEeccccchhhhcc
Confidence 888877654321 1111110 011111111111111 00 00
Q ss_pred ccCCCceEEEEEcCCC-----cEEEEECCCeEEEEcC-CC---CeeeEeecCCc------------cEEEEEE--cCCEE
Q 003217 416 GDDNRRTEALTTSIDG-----MIWTGGANGLLLQWDP-NG---NRLQDFQYLPF------------AVQCLCT--FGSQI 472 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg-----~l~Sgs~DgtIrlWD~-~g---~~l~tl~~H~~------------~V~sls~--dG~~L 472 (838)
......+..+.+.+++ .+++|+.|+.|++||+ .+ +++..+.+|.. +|+++++ +|++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 288 (368)
T 3mmy_A 209 SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288 (368)
T ss_dssp CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE
T ss_pred ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE
Confidence 0111223333333222 1899999999999999 44 56778888876 7998876 68899
Q ss_pred EEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++|+.||.|++||+. ++++..+.+|...|.++++ ++++|+++|.|+..+.|++..
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999997 7889999999999999985 788999999999887777544
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.9e-25 Score=253.28 Aligned_cols=229 Identities=18% Similarity=0.261 Sum_probs=186.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|+.+ ++++|++|+.||+|++||+.++ +....+.+|.++|++++| +++ |++|+.||+|++||+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 567999987 6899999999999999999987 677889999999999999 566 799999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+++....+.. | ...+.++.++ +..+++++ +++|++||+.+++.+...
T Consensus 201 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 201 NTGEMLNTLIH-------------------H----------CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCCEEEEECC-------------------C----------CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCcEEEEEcC-------------------C----------CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 87653322211 1 3346666664 34666665 689999999876542110
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
. .+..|...|.++.+
T Consensus 250 ~----------------------------------------------------------------~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 250 R----------------------------------------------------------------VLVGHRAAVNVVDF- 264 (435)
T ss_dssp E----------------------------------------------------------------EECCCSSCEEEEEE-
T ss_pred e----------------------------------------------------------------EecCCCCcEEEEEe-
Confidence 0 01123334555666
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
.+..+++|+.||+|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. ++++.++.+|...|.++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 3345899999999999999 7899999999999999999999999999999999999987 7889999999999999999
Q ss_pred CCCEEEEEcCCCCeeeeecCC
Q 003217 507 GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~s 527 (838)
+++++++++.||+|++||+..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999754
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=6.6e-26 Score=273.07 Aligned_cols=242 Identities=19% Similarity=0.219 Sum_probs=188.0
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
..+|.||+++|++ .+|+||+.||+||+|++.... .........+.+|...|++++|+|+|+ |+|||.|++|||||
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD---KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCST---TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCC---cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 8899999999875 799999999999999997642 011123467899999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.++.....+ .+| ...|.++++++++..+++++ |++|++||....... .
T Consensus 459 ~~~~~~~~~~-------------------~~h----------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~ 508 (694)
T 3dm0_A 459 LAAGVSTRRF-------------------VGH----------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-T 508 (694)
T ss_dssp TTTTEEEEEE-------------------ECC----------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-E
T ss_pred CCCCcceeEE-------------------eCC----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-e
Confidence 9765432221 112 45688899988888888877 689999997543221 1
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+. . ....|...|.++++
T Consensus 509 ~~-----------------------------~----------------------------------~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 509 IS-----------------------------E----------------------------------GGEGHRDWVSCVRF 525 (694)
T ss_dssp EC-----------------------------S----------------------------------STTSCSSCEEEEEE
T ss_pred ec-----------------------------c----------------------------------CCCCCCCcEEEEEE
Confidence 10 0 01234456778889
Q ss_pred cCCC---cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 428 SIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 428 S~dg---~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
+|++ .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.||+|+|||+. ++++..+..| ..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-Cc
Confidence 9886 4899999999999999 68899999999999999876 68899999999999999987 7777777654 57
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 501 VIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|.++++ ++.++ +++.|++|++||+.+...
T Consensus 605 v~~~~~sp~~~~l-~~~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 605 IHALCFSPNRYWL-CAATEHGIKIWDLESKSI 635 (694)
T ss_dssp EEEEEECSSSSEE-EEEETTEEEEEETTTTEE
T ss_pred EEEEEEcCCCcEE-EEEcCCCEEEEECCCCCC
Confidence 888886 44444 455677899999877544
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1e-25 Score=254.23 Aligned_cols=268 Identities=14% Similarity=0.142 Sum_probs=192.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEecccc------------ccEEEEEEecCC--
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHR------------GPVLSLCISSYG-- 253 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~---~~~~~~~~~~~l~gH~------------~~V~slafs~dG-- 253 (838)
.++|.|++|+|+|++|++|+.||+|++|++.++.. .....++....+++|. ++|++|+|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 67999999999999999999999999999987520 0001222467789998 899999999997
Q ss_pred C-EEEeeCCCcEEEEECCCcceeee---cCCCce----------------eeeEEEEeec--eeecccceeccceeeeec
Q 003217 254 D-LWSGSEGGGIKIWPWEAIEKALS---LKPEER----------------HTAALIVERS--YIDLRSHLSVNGFSSILT 311 (838)
Q Consensus 254 ~-L~SgS~DgtIrvWd~~~~~~~~~---~~~~~~----------------~~~~~~~~~s--~~~l~~~~~~~~~~~~~s 311 (838)
. |++|+.|++|++|++.+...... +..+.. .......... ...+.+ +.
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~ 177 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA----------HT 177 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC----------CS
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC----------CC
Confidence 4 88999999999999865332111 000000 0000000000 000011 25
Q ss_pred CCeEEEEEcCCCCEEEEeCCCcEEEEeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeee
Q 003217 312 SDIKNLLSDHSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (838)
Q Consensus 312 ~~v~~las~~~~~~V~s~s~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (838)
..+.++++++++..++++.+++|++||+.+ ++++..+....
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------------- 219 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKP-------------------------------------- 219 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCC--------------------------------------
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccc--------------------------------------
Confidence 678899999999999998788999999984 33333221100
Q ss_pred EeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-c-EEEEECCCeEEEEcC-CCCe----eeEeecCCc---
Q 003217 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNR----LQDFQYLPF--- 460 (838)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~----l~tl~~H~~--- 460 (838)
..+..|...|.+++++|++ . +++|+.||+|++||+ ++++ ++.+.+|..
T Consensus 220 ----------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 220 ----------------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp ----------------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred ----------------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 0133456678899999997 4 899999999999999 6665 788888886
Q ss_pred ---------cEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCE-----------------EEEEeCCCE
Q 003217 461 ---------AVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPV-----------------IKMAVGAGY 510 (838)
Q Consensus 461 ---------~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V-----------------~sla~dg~~ 510 (838)
.|.++++ +|++|++|+. ++|+|||+. ++++..+.+|...+ .++.+++++
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 8999876 6889999988 999999986 67899999997532 233468899
Q ss_pred EEEEcCCCCeeeeecCCCC
Q 003217 511 IFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 511 l~S~S~DgtIrlWdl~s~~ 529 (838)
|++++.|++|++||+.+..
T Consensus 357 l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 357 VMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp EEEECSTTEEEEEETTTCC
T ss_pred EEEeccCCEEEEEEcCCCc
Confidence 9999999999999987653
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-26 Score=256.87 Aligned_cols=280 Identities=13% Similarity=0.092 Sum_probs=206.2
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 192 SSVMCMVGDEASG-VVWSG----------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSG----------s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
..|.|++|+|+|+ +|++| +.||+|++||+.++.. ........|...|++++|+|+|+ |++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS------EKPIASLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG------CSCSCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC------CcEEEEEecCCceEEEEECCCCCeEEEEc
Confidence 3688999999997 99999 8999999999988620 01222346899999999999997 88999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEE
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALW 337 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lW 337 (838)
.|++|++|++.+..... .... .+.+| ...+.+++++++ +..+++++ +++|++|
T Consensus 87 ~dg~v~vw~~~~~~~~~------~~~~---------~~~~h----------~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAI------NSMA---------RFSNH----------SSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCEEEECCSSTTSCC------CEEE---------ECCCS----------SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred cCCeEEEeecccccccc------cchh---------hccCC----------ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99999999997621000 0000 01112 446778888876 67788777 6799999
Q ss_pred eccCcc------EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec-CcceeeecCCcEEEEe
Q 003217 338 DARTRE------LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVA 410 (838)
Q Consensus 338 D~~tg~------~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~~v~ 410 (838)
|+.+++ ....+.. .......+..+.+.+. +..++++..++..+++
T Consensus 142 d~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQ----------------------------SMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCC----------------------------SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred ECCCCcccccccccccccc----------------------------ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 999876 2111100 0001112234455555 3455666677766665
Q ss_pred c--cC----ccccC------CCceEEEEEcCCC--cEEEEECCC---eEEEEcC-CC-CeeeEee-cCCccEEEEEE---
Q 003217 411 A--KG----GFGDD------NRRTEALTTSIDG--MIWTGGANG---LLLQWDP-NG-NRLQDFQ-YLPFAVQCLCT--- 467 (838)
Q Consensus 411 ~--~g----~~~~~------~~~v~ala~S~dg--~l~Sgs~Dg---tIrlWD~-~g-~~l~tl~-~H~~~V~sls~--- 467 (838)
. .+ .+..+ ...+.+++++|++ .+++++.|+ +|++||+ ++ ++++.+. +|...|+++++
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ 273 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC
Confidence 4 11 12222 6789999999997 488999998 9999999 54 6788888 99999999976
Q ss_pred cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CC-CEEEEEcCCCCeeeeecCCCCC
Q 003217 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg-~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++++|++|+.|++|++||+. ++++..+.+|...|.++++ ++ .++++++.|++|++|++.....
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 67899999999999999987 7889999999999999985 55 7899999999999999977554
No 81
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=5.9e-25 Score=237.00 Aligned_cols=238 Identities=19% Similarity=0.286 Sum_probs=188.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
..+|.|++|+|++++|++|+ ||+|++|++.++. .......+ .+|..+|++++|+|+|+ |++|+.|++|++|
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-----CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-----ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 78999999999999999999 9999999998752 11222333 38999999999999998 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|+.+.+..... .+..+ ...+.+++..+++..+++++ ++.|++||+++++.+.
T Consensus 125 d~~~~~~~~~~-----------------~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 125 DLAAPTPRIKA-----------------ELTSS----------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp ECCCC--EEEE-----------------EEECS----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ECCCCCcceee-----------------ecccC----------CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 99764321100 00111 34577888888888888776 5789999999887655
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
.+.. |...+.+++
T Consensus 178 ~~~~-------------------------------------------------------------------~~~~i~~~~ 190 (337)
T 1gxr_A 178 QFQG-------------------------------------------------------------------HTDGASCID 190 (337)
T ss_dssp EECC-------------------------------------------------------------------CSSCEEEEE
T ss_pred eeec-------------------------------------------------------------------ccCceEEEE
Confidence 4432 223355678
Q ss_pred EcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEE
Q 003217 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVI 502 (838)
Q Consensus 427 ~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~ 502 (838)
++|++. +++++.|++|++||+ +++++..+ .|...|.++++ +|++|++|+.|+.|++||+.......+.+|...|.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~ 269 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcccee
Confidence 888886 889999999999999 67777766 47788998865 68899999999999999998655567889999999
Q ss_pred EEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 503 KMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 503 sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
++++ +++++++++.|+.|++|++.+..
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 9985 68899999999999999987643
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=1.9e-25 Score=250.20 Aligned_cols=288 Identities=12% Similarity=0.135 Sum_probs=202.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.+.+++|+|+|++|++|+.||+|++||+.++ +....+.+| ..+...+|+++|+ |++|+.|++|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE--------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc--------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 4567899999999999999999999999886 334445566 4556667899998 78999999999999976
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
......+. +| ...+.++++++++..+++++ +++|++||+.+++++..+.+
T Consensus 129 ~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 129 NLQREIDQ-------------------AH----------VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp CEEEEETT-------------------SS----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred cceeeecc-------------------cc----------cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 43322111 12 45688899988888888887 57899999999999888887
Q ss_pred CCceEEeeecccCccccc----ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-----cCccccCCCc
Q 003217 351 DGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFGDDNRR 421 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~~~~~~ 421 (838)
|...+..+.+++.....+ +..++ +|... ..+....+.. ..++...+..+.. ......+...
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~--iwd~~-~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIR--LWECG-TGTTIHTFNR-------KENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEE--EEETT-TTEEEEEECB-------TTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEE--EeECC-CCceeEEeec-------CCCCCCCccEEEEecCCcceeeecccCc
Confidence 776656666655432211 11122 22211 0111000000 0011122222211 0011123455
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEee-cCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCC-Cc-cccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-GN-LLGG 493 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~-g~-~i~~ 493 (838)
+.+++++|+|. +++|+.||+|++||+ +++.+..+. .|...|+++++ +|+ +|++|+.||+|++||+. ++ ++..
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE 329 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh
Confidence 66677889997 789999999999999 677766664 58899999976 566 99999999999999997 43 4778
Q ss_pred ccc-cccCEEEEE-eCCCEEEEEcCCCCeeeeecCCC
Q 003217 494 WVA-HSSPVIKMA-VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 494 l~g-H~~~V~sla-~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+.+ |...|.++. .+++++++++.|++|++|++..+
T Consensus 330 ~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 330 FLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred hhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 877 677888887 47889999999999999998764
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=1.6e-25 Score=242.93 Aligned_cols=267 Identities=10% Similarity=0.035 Sum_probs=202.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
.++|.|++|+|++++|++|+.||+|++|++.++. .......+.+|..+|++++|+|+++ |++|+.||+|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 7799999999999999999999999999998751 0113455679999999999999998 68999999999999
Q ss_pred C-CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC-----
Q 003217 269 W-EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART----- 341 (838)
Q Consensus 269 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t----- 341 (838)
+ .+... ..+ .+. .+...+.++++.+ +..+++++ +++|++||+++
T Consensus 86 ~~~~~~~-~~~-------------------~~~--------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 86 LIGSPSF-QAL-------------------TNN--------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SSSSSSE-EEC-------------------BSC--------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred eccCCce-Eec-------------------ccc--------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 9 76432 111 110 0144677888887 77777776 67899999987
Q ss_pred ----ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc---
Q 003217 342 ----RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG--- 414 (838)
Q Consensus 342 ----g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~--- 414 (838)
++++.++. +... ...+.+.+.. ++++..++..+++....
T Consensus 137 ~~~~~~~~~~~~-~~~~-------------------------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKNK-------------------------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEEESCSSSSS-SCCC-------------------------------EEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred ccccCCeeeEEe-eCCc-------------------------------eEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 54433332 1111 1122333222 45555555555544111
Q ss_pred ------cccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CC------CeeeEeecCCc---------cEEEEEE--c
Q 003217 415 ------FGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NG------NRLQDFQYLPF---------AVQCLCT--F 468 (838)
Q Consensus 415 ------~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g------~~l~tl~~H~~---------~V~sls~--d 468 (838)
...+...+.+++++| ++. +++|+.||.|++||. .+ +.+.++.+|.. .|.++++ +
T Consensus 183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence 123556789999999 876 889999999999999 44 78888888865 9999876 6
Q ss_pred CCEEEEEeeCCeEEEEeCC-Cccccccccc-ccCEEEEEeCCCEEEEEcCCCC-eeeeec
Q 003217 469 GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAVGAGYIFTLANHGG-IRGWNV 525 (838)
Q Consensus 469 G~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla~dg~~l~S~S~Dgt-IrlWdl 525 (838)
|++|++|+.||.|++||+. ++++..+.+| ...|.+++++++++++++.|++ .+.|..
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 8899999999999999997 7889999999 9999999999999999999999 777664
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=7.6e-26 Score=251.64 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=182.1
Q ss_pred cCceeEEEEecCC-EEEE-ec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCcee-eec-CCCCeEEEE
Q 003217 131 IGCFLRTIVCTEE-QLWA-GG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVK-GVSSVMCMV 198 (838)
Q Consensus 131 ~~~~~~~l~~~~~-~l~~-g~--------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~-g~~~V~~la 198 (838)
.|-++++++...+ ++++ |. ++.|++|++........ .......+ .+. +...|.|++
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~------------~~~~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK------------EQFHILSEFALEDNDDSPTAID 80 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH------------HHEEEEEEEECCTTSCCCCEEE
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee------------eeeeeeeEEEccCCCCceEEEE
Confidence 4556888876533 4544 32 33599999864322110 00000000 011 155788887
Q ss_pred EcCCCCEEEEE-----------eCCCcEEEEECCCCccCCCCCcceeEE-----eccccccEEEEEEecCCC-EE--Eee
Q 003217 199 GDEASGVVWSG-----------HRDGRIMCWKMNARLLDSDDGFGEVLS-----WQAHRGPVLSLCISSYGD-LW--SGS 259 (838)
Q Consensus 199 ~s~dg~~LaSG-----------s~DGtIrvWd~~~g~~~~~~~~~~~~~-----l~gH~~~V~slafs~dG~-L~--SgS 259 (838)
++. ..+++| +.|+++|+|++.+.. ...+.... ...|...|.+++|||||+ |+ ||+
T Consensus 81 ~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 81 ASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVN----DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp EET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTT----TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred eCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCC----ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 764 455554 567899999987652 11111111 123556799999999998 44 677
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~ 339 (838)
.|++|||||+.+++....+. + ...|..+++++++..+++++++++++|+.
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~--------------------~----------~~~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE--------------------T----------RGEVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE--------------------C----------SSCCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred CCCEEEEeECCCCcEEEEeC--------------------C----------CCceEEEEEccCCceEEeccceeEEEEEe
Confidence 89999999998755433221 1 34578899999999999999989999999
Q ss_pred cCccEEEEE--ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc----EEEEec--
Q 003217 340 RTRELLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA----VRRVAA-- 411 (838)
Q Consensus 340 ~tg~~l~~l--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~----v~~v~~-- 411 (838)
.+++.+... ..+......+.+ .+++...+.+..++ ..+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~f-------------------------------spdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINF-------------------------------IADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEE-------------------------------EETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred ccCcceeeeecCCCCCCEEEEEE-------------------------------cCCCCEEEEEecCCcceeEEeecccc
Confidence 888875433 223333333333 33333333322221 111111
Q ss_pred --------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe-ecCCccEEEEEE--cCCEEEEEeeC
Q 003217 412 --------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 412 --------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls~--dG~~LasGs~D 478 (838)
...+..|...|.+++|+|||+ |++|+.|++|+|||+ ++++++++ .+|..+|++|++ ||++|++||.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 113456778899999999998 789999999999999 78999885 789999999875 79999999999
Q ss_pred CeEEEEeCC
Q 003217 479 GIVQVLDLE 487 (838)
Q Consensus 479 gtIrlWD~~ 487 (838)
++|||||+.
T Consensus 334 ~tvrvw~ip 342 (365)
T 4h5i_A 334 NTIHIIKLP 342 (365)
T ss_dssp SEEEEEECC
T ss_pred CeEEEEEcC
Confidence 999999985
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=2.1e-24 Score=262.98 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=213.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|.|++|+|+|++|++|+.||+|++||+.++ +....+.+|.++|++++|+|+|+ |++|+.||+|+|||+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 789999999999999999999999999999987 67788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc-cEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg-~~l~~ 347 (838)
.+++....+. +| ...+.++++++++..+++++ +++|++||+.++ .+...
T Consensus 85 ~~~~~~~~~~-------------------~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CCCcEEEEEe-------------------cC----------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 7754332221 11 45688889988888888877 579999999987 66666
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEecc--C----ccc-cCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK--G----GFG-DDN 419 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~--g----~~~-~~~ 419 (838)
+..|...+..+ .|.+ .+...+++..++..+++.. + .+. .+.
T Consensus 136 ~~~~~~~v~~~-------------------------------~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 136 FEGHEHFVMCV-------------------------------AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp EECCSSCEEEE-------------------------------EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EcCCCCcEEEE-------------------------------EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 66554433222 3333 2334455666665555541 1 111 233
Q ss_pred CceEEEEEcC--CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc
Q 003217 420 RRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 420 ~~v~ala~S~--dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~ 492 (838)
..+..++++| ++. +++|+.||+|++||. +++++.++.+|...|.++++ +|++|++|+.||+|++||+. ++++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 6788899988 775 889999999999999 78999999999999999865 68899999999999999987 78899
Q ss_pred cccccccCEEEEEe--CCCE-EEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSSPVIKMAV--GAGY-IFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~~V~sla~--dg~~-l~S~S~DgtIrlWdl~s~~~ 530 (838)
.+..|...|+++++ +++. ++..+.|+.+.+|++....+
T Consensus 265 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 265 TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999999999986 4442 35566678899999765433
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.5e-26 Score=265.19 Aligned_cols=236 Identities=12% Similarity=-0.044 Sum_probs=164.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC------CC-EEEeeCCCcEEEEECCCc
Q 003217 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 200 s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~-L~SgS~DgtIrvWd~~~~ 272 (838)
+|++++++||+.|++|++|++.++. ........+.+|.+.|++|+|+|+ +. |+|||.||+|||||+.+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~----~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTST----LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ------------CEEEEEEEEETTT----CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred chhhhhhccCCCCceEEEEEccCCC----CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 4566778889999999999998752 011112456788999999999997 34 789999999999999754
Q ss_pred ceee--ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-EEEE
Q 003217 273 EKAL--SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (838)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~-l~~l 348 (838)
.... ..... .....+.+| ...+.++++.++ ..|++|+ |++|++||+++++. ..++
T Consensus 246 ~~~~~~~~~~~----------~p~~~l~~h----------~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 246 ATDVHVFKMCE----------KPSLTLSLA----------DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp SSSSSEEECCC----------SCSEEECCT----------TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred ccccccceeec----------CceEEEEcC----------CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEe
Confidence 3110 00000 000111222 456888888765 4677766 68999999986531 1111
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEE--E
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL--T 426 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al--a 426 (838)
..|...|.+| +
T Consensus 305 -------------------------------------------------------------------~~H~~~V~sv~~~ 317 (524)
T 2j04_B 305 -------------------------------------------------------------------QVHDSYILSVSTA 317 (524)
T ss_dssp -------------------------------------------------------------------ECSSSCEEEEEEE
T ss_pred -------------------------------------------------------------------ecccccEEEEEEE
Confidence 1233445666 5
Q ss_pred EcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCc--cEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 427 TSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 427 ~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~--~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
++++| . |+|||.|++|||||+ +++++.++.+|.. .|.+++ ++++.+++|+.|++|+|||+. +.++.++.+|.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 78886 4 799999999999999 6788888888764 466664 468899999999999999987 67788899999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+.|++|++ +++.++|||.|++||+||+..
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999985 778999999999999999643
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=1.1e-23 Score=227.93 Aligned_cols=272 Identities=18% Similarity=0.195 Sum_probs=194.2
Q ss_pred ceeEEEEec---CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEEE
Q 003217 133 CFLRTIVCT---EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVW 207 (838)
Q Consensus 133 ~~~~~l~~~---~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~La 207 (838)
..+.+|+.. ++.|.+ |.|++|||||+.+...... .+.+ ...| ..+|.|++|+|+|++|+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------------~~~~~l~~h-~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------------IPQRALRGH-SHFVSDVVISSDGQFAL 102 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------------EEEEEECCC-SSCEEEEEECTTSSEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------------eeeEEEeCC-CCCEEEEEECCCCCEEE
Confidence 356677765 234554 5699999999975432110 1111 1123 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
+|+.||.|++|+.... ........|...+..+.+++++. |++|+.|+.+++||+.........
T Consensus 103 s~~~d~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------- 166 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------- 166 (340)
T ss_dssp EEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC--------
T ss_pred EEcccccceEEeeccc--------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE--------
Confidence 9999999999999886 55666778889999999999987 899999999999998653221111
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCC--CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
+.++ ...+..+++...+ ..+++++ +++|++||+.+++++..+.+|...+..+
T Consensus 167 ----------~~~~----------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~----- 221 (340)
T 4aow_A 167 ----------DESH----------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV----- 221 (340)
T ss_dssp ----------SSSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-----
T ss_pred ----------eccc----------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE-----
Confidence 0011 2345555554432 3455554 6899999999999988887665433333
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc-----cccCCCceEEEEEcCCCcEEEEEC
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FGDDNRRTEALTTSIDGMIWTGGA 438 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~-----~~~~~~~v~ala~S~dg~l~Sgs~ 438 (838)
.|.+++..++++..++..+++.... ...+...+.++.++|++.+++++.
T Consensus 222 --------------------------~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 222 --------------------------TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp --------------------------EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred --------------------------EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC
Confidence 3444444556666666666654111 112445788999999999999999
Q ss_pred CCeEEEEcCC-CCeeeEee---------cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 439 NGLLLQWDPN-GNRLQDFQ---------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 439 DgtIrlWD~~-g~~l~tl~---------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
|++|++||+. +.++.++. +|...|+++++ +|++|++|+.||+|+|||++
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999994 55555543 68899999875 78999999999999999986
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=4.4e-25 Score=240.87 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-----ccccEEEEEEecC----CC-EE
Q 003217 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HRGPVLSLCISSY----GD-LW 256 (838)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-----H~~~V~slafs~d----G~-L~ 256 (838)
.++|.|++|+|+ ...+++++.|+.|++||+.++ +....+++ |...|++++|+|+ |. |+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 789999999984 566777777889999999876 34444543 5688999999999 54 78
Q ss_pred EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcE
Q 003217 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSF 334 (838)
Q Consensus 257 SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI 334 (838)
+|+.||+|++||+.+++....+. +| ...+.++++.+ ++..+++++ +++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~-------------------~~----------~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYV-------------------GH----------GNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEE-------------------SC----------CSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EecCCCEEEEEEchhceEeeeec-------------------CC----------CCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999997654322211 11 45688888888 778888877 6799
Q ss_pred EEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc
Q 003217 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (838)
Q Consensus 335 ~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (838)
++||+.+++.+..+..
T Consensus 141 ~iwd~~~~~~~~~~~~---------------------------------------------------------------- 156 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGG---------------------------------------------------------------- 156 (366)
T ss_dssp EEEETTTTEEEEEECS----------------------------------------------------------------
T ss_pred EEEEeecCeEEEEecc----------------------------------------------------------------
Confidence 9999998876554411
Q ss_pred cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec----------------------------CCccEEE
Q 003217 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----------------------------LPFAVQC 464 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~----------------------------H~~~V~s 464 (838)
+..|...|.+++++|++. +++|+.|++|++||+ +++++..+.. |...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 112344567888999886 889999999999999 5665554443 9999999
Q ss_pred EEEcCCEEEEEeeCCeEEEEeCC-Cc--------------ccccccccccCEEEEE--eC--CCEEEEEcCCCCeeeeec
Q 003217 465 LCTFGSQIWVGYMNGIVQVLDLE-GN--------------LLGGWVAHSSPVIKMA--VG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~--------------~i~~l~gH~~~V~sla--~d--g~~l~S~S~DgtIrlWdl 525 (838)
+++++++|++|+.|+.|++||+. ++ ++..+.+|...|++++ ++ ++++++++.|+.|++||+
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99999999999999999999975 32 3677888999998876 56 899999999999999998
Q ss_pred CCCCC
Q 003217 526 TSPGP 530 (838)
Q Consensus 526 ~s~~~ 530 (838)
....+
T Consensus 317 ~~~~~ 321 (366)
T 3k26_A 317 EVEDP 321 (366)
T ss_dssp CSSSG
T ss_pred CCCCC
Confidence 76543
No 89
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2.4e-25 Score=249.83 Aligned_cols=257 Identities=9% Similarity=-0.043 Sum_probs=156.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--------CCC-EEEeeCCCcE
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--------YGD-LWSGSEGGGI 264 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--------dG~-L~SgS~DgtI 264 (838)
+....+.+++.+|+||+.|++||+||..++.+ ........+.||++.|++|+|+| ||+ |+|||.|++|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 33444555677899999999999999988620 00011234689999999999998 777 7899999999
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCc
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg 342 (838)
||||+.+..+..... .+ ...+.++++.+.+. ++++++ +++|++||++++
T Consensus 169 ~~Wd~~~~~~~~~~~-------------------~~----------~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 169 IIWRLTDEGPILAGY-------------------PL----------SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEEEEETTEEEEEEE-------------------EC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEEECCCCceeeeec-------------------CC----------CCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 999986543322211 11 45677888887664 577766 689999999998
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
+....+..+... ..... .+ ..... ... ......+...+
T Consensus 220 ~~~~~~~~~~~~------~~~~~-----------~s------------~~~~~--------~~~-----~~~~~~~~~~v 257 (393)
T 4gq1_A 220 LSAEENSQTELV------KNPWL-----------LT------------LNTLP--------LVN-----TCHSSGIASSL 257 (393)
T ss_dssp C----------C------SCCCS-----------EE------------EESGG--------GC-----------CCSSSC
T ss_pred cccccccccCCc------ccceE-----------Ee------------ccccc--------cee-----eeecccccccc
Confidence 875544321110 00000 00 00000 000 00112344556
Q ss_pred EEEEEc-CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE-------------------E---cCCEEEEEee
Q 003217 423 EALTTS-IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-------------------T---FGSQIWVGYM 477 (838)
Q Consensus 423 ~ala~S-~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls-------------------~---dG~~LasGs~ 477 (838)
.++.++ +||. |++++.|+++++||+ .++....+..|...+..+. . ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 677764 7776 899999999999999 6777777776665554331 1 2347788889
Q ss_pred CCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
||+|+|||+. ++++..+.+|...|.+|++ ||++|++++.|| +.+|.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 9999999987 7788888999999999985 889999998765 656654
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=5.4e-24 Score=229.03 Aligned_cols=238 Identities=11% Similarity=0.155 Sum_probs=167.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaS 208 (838)
.+++++.+ ++.|.+ +.|++|||||+...... + ...+ ..| .++|.+++|+++ +++|+|
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~--------------~~~l--~gH-~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L--------------IDTL--TGH-EGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C--------------CEEE--CCC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E--------------EEEE--ccc-cCCeEEEEecCCCcCCEEEE
Confidence 46666655 456666 56999999998642110 0 0111 133 789999999864 899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCccee--eecCCCce
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKA--LSLKPEER 283 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~--~~~~~~~~ 283 (838)
|+.||+|++||+.++. ......+.+|..+|++++|+|+ |. |++|+.|++|++||+.+.... ..+
T Consensus 73 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~----- 141 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII----- 141 (297)
T ss_dssp EETTTEEEEEEBSSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-----
T ss_pred EcCCCEEEEEEcCCCc------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-----
Confidence 9999999999998752 1345678899999999999997 66 789999999999999653211 111
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-------------CCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-------------RAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-------------~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
.+| ...+.++++++. +..+++++ |++|++||+++++....+.
T Consensus 142 --------------~~h----------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~ 197 (297)
T 2pm7_B 142 --------------DAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (297)
T ss_dssp --------------ECC----------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred --------------ecc----------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence 111 223444444443 45677776 6899999987654110000
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
..+.+|...|.+++|+|
T Consensus 198 ---------------------------------------------------------------~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 198 ---------------------------------------------------------------STLEGHSDWVRDVAWSP 214 (297)
T ss_dssp ---------------------------------------------------------------EEECCCSSCEEEEEECC
T ss_pred ---------------------------------------------------------------EEecCCCCceEEEEECC
Confidence 01234556678899999
Q ss_pred CC----cEEEEECCCeEEEEcCC-CC---eeeEe--ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 430 DG----MIWTGGANGLLLQWDPN-GN---RLQDF--QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 430 dg----~l~Sgs~DgtIrlWD~~-g~---~l~tl--~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
++ .|++|+.|++|++||+. +. ....+ ..|...|.++++ +|++|++|+.|++|+||+..
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 84 48999999999999984 32 22334 468889998865 78999999999999999965
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=2.6e-24 Score=240.96 Aligned_cols=270 Identities=14% Similarity=0.093 Sum_probs=191.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|+.|+|||+.+..... .....+ ..| .++|.|++|+| ++++|++|+.||+|++||+.++..
T Consensus 54 ~~~g~i~v~~~~~~~~~~-------------~~~~~~--~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~- 116 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVD-------------KNVPLV--CGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL- 116 (402)
T ss_dssp SSSCCEEEEETTCCEECC-------------TTCCCB--CCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC-
T ss_pred cCCCEEEEEECccCCCCC-------------CCCceE--ecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC-
Confidence 568999999986431110 001111 123 78999999999 999999999999999999987520
Q ss_pred CCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
.....+....+.+|...|++|+|+|+| . |+||+.|++|++||+.+++....+.. .+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~---- 175 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------DVH---- 175 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------TTC----
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------CCC----
Confidence 000013456789999999999999998 4 78999999999999977543332210 011
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE-ecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
...+.+++.++++..+++++ +++|++||+++++++..+ ..|..
T Consensus 176 ------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------- 220 (402)
T 2aq5_A 176 ------PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----------------------------- 220 (402)
T ss_dssp ------CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-----------------------------
T ss_pred ------CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-----------------------------
Confidence 34678888888888888776 689999999998876654 22110
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE---ECCCeEEEEcC-CCCe-eeEee
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG---GANGLLLQWDP-NGNR-LQDFQ 456 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg---s~DgtIrlWD~-~g~~-l~tl~ 456 (838)
..+..+++++++. +++| +.|++|++||+ +++. +....
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 221 -------------------------------------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp -------------------------------------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred -------------------------------------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 0133567888888 4566 58999999999 4543 44433
Q ss_pred -cCCccEEEEEE--cCCEEE-EEeeCCeEEEEeCC-Ccc-ccccccc--ccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 457 -YLPFAVQCLCT--FGSQIW-VGYMNGIVQVLDLE-GNL-LGGWVAH--SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 457 -~H~~~V~sls~--dG~~La-sGs~DgtIrlWD~~-g~~-i~~l~gH--~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.|...|.++++ +|++|+ +|+.|++|++||+. ++. +..+..| ...|.++++.++..+.++.|+.+++|++..
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 46777887754 688886 55579999999987 442 5566555 589999987554434456788999999865
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=2e-24 Score=234.75 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=164.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaS 208 (838)
.+.+++.+ ++.|.+ +.|++|||||+.+.... + ...+ ..| .++|.+++|++ ++++|+|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~--------------~~~l--~gH-~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-L--------------IADL--RGH-EGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-E--------------EEEE--ECC-SSCEEEEEECCGGGSSCEEE
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-E--------------EEEE--cCC-CccEEEEEeCCCCCCCEEEE
Confidence 45566654 556666 56999999998653211 0 0011 123 78999999986 4899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+.|++|++||+.++. ......+.+|.++|++|+|+|+ |. |++|+.|++|++||+.+.........
T Consensus 77 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~----- 145 (316)
T 3bg1_A 77 CSYDRKVIIWREENGT------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI----- 145 (316)
T ss_dssp EETTSCEEEECCSSSC------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----
T ss_pred EECCCEEEEEECCCCc------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----
Confidence 9999999999998752 1345678899999999999998 65 89999999999999865321100000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcC-----------------CCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-----------------SRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-----------------~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.+| ...+.++++++ .+..+++++ |++|++||+.++.....
T Consensus 146 -----------~~~h----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 146 -----------NNAH----------TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp -----------TTSS----------SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred -----------eccc----------cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence 0011 01111112211 134667766 67899999864321000
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+ ..+..|...|.+++|
T Consensus 205 ~----------------------------------------------------------------~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 205 E----------------------------------------------------------------QKLEAHSDWVRDVAW 220 (316)
T ss_dssp E----------------------------------------------------------------ECCBCCSSCEEEEEC
T ss_pred e----------------------------------------------------------------eecccCCCceEEEEe
Confidence 0 012345556778889
Q ss_pred cCCC-----cEEEEECCCeEEEEcCCC----C-eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 428 SIDG-----MIWTGGANGLLLQWDPNG----N-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 428 S~dg-----~l~Sgs~DgtIrlWD~~g----~-~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+|++ .|++|+.|++|++||+.. + ..+.+..|...|+++++ +|++|++|+.|++|+||+..
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8875 489999999999999832 1 33556789999999875 68899999999999999964
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=8e-24 Score=234.79 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=196.6
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC----C---CE
Q 003217 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA----S---GV 205 (838)
Q Consensus 134 ~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d----g---~~ 205 (838)
.+.+++.+.+.|++ +.|+.|++||+.+...... .........| ..+|.|++|+|+ + ++
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecC-CCcEEEEEEecccccCCccccE
Confidence 56677777776666 5689999999976431100 0000111123 789999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcce-----eEEeccc-----cccEEEEEEe----cCCC--EEEeeCCCcEEEEEC
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGE-----VLSWQAH-----RGPVLSLCIS----SYGD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~-----~~~l~gH-----~~~V~slafs----~dG~--L~SgS~DgtIrvWd~ 269 (838)
|++|+.||+|++|++.++ +. ...+.+| ...|++++|+ |++. |++|+.|+.|++||+
T Consensus 84 l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITRE--------DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEETTSCEEEEEEEEC--------TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEccCC--------cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999999886 33 6778888 5999999999 9886 679999999999999
Q ss_pred CC------cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc
Q 003217 270 EA------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 270 ~~------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg 342 (838)
.+ ..... +.+.. . +.+.. .....+...+.++++.+++ .+++++ ++.|++||++++
T Consensus 156 ~~~~~~~~~~~~~-~~~~~----~---------~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 156 HPFADESNSLTLN-WSPTL----E---------LQGTV---ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp ESSSSHHHHTTTC-CCCEE----E---------EEEEE---CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred Cccccccccceee-ccCcc----e---------eeeee---ccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 66 32111 10000 0 00000 0000114457788888888 888777 578999999999
Q ss_pred cEEEEEec---C---CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC---cEEEEec--
Q 003217 343 ELLKVFNI---D---GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD---AVRRVAA-- 411 (838)
Q Consensus 343 ~~l~~l~~---~---~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~---~v~~v~~-- 411 (838)
+++..+.. | ...+..+.+++ .+..++++..+ +..+++.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~-------------------------------~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSP-------------------------------QGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECS-------------------------------STTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEEEeccccccccCCccceEEECC-------------------------------CCCEEEEEecCCCCceEEEEECC
Confidence 99888876 4 33333333333 23333344444 3333332
Q ss_pred c----Ccccc-------------CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEee------cC--------
Q 003217 412 K----GGFGD-------------DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ------YL-------- 458 (838)
Q Consensus 412 ~----g~~~~-------------~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~------~H-------- 458 (838)
. ..+.. |...|.+++++|++. |++|+.|++|++||+ +++++.++. +|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 1 12223 678899999999987 789999999999999 789999999 88
Q ss_pred -------CccEEEEEE--cC----------CEEEEEeeCCeEEEEeCC
Q 003217 459 -------PFAVQCLCT--FG----------SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 459 -------~~~V~sls~--dG----------~~LasGs~DgtIrlWD~~ 487 (838)
...|+++++ +| ++|++|+.||.|++||++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 999999865 66 699999999999999986
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=2.1e-24 Score=243.50 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=198.9
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCC------------CCeE
Q 003217 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGV------------SSVM 195 (838)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~------------~~V~ 195 (838)
...+.+++.+ ++.|.+ +.|+.|+|||+.+...... ... ....... ...| . .+|.
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--------~~~-~~~~~~~~~~~h-~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--------HSR-GEYNVYSTFQSH-EPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--------CCC-CCEEEEEEEECC-CCEEEGGGTEEECCCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--------ccc-cceeEecccccc-cccccccccccccCceE
Confidence 4467777766 345655 4689999999976432110 000 0000000 1112 4 7899
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEECCCCccC-------------------CCCCc------------ceeEE-ecccc
Q 003217 196 CMVGDEAS--GVVWSGHRDGRIMCWKMNARLLD-------------------SDDGF------------GEVLS-WQAHR 241 (838)
Q Consensus 196 ~la~s~dg--~~LaSGs~DGtIrvWd~~~g~~~-------------------~~~~~------------~~~~~-l~gH~ 241 (838)
+++|+|++ .+|++|+.||+|++||+.++... ....+ ..... ..+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999998 89999999999999998763100 00000 00112 36899
Q ss_pred ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
..|++++|+|+|+ |++| .|++|++||+.+....+.... .....+.+| ...+.+++++
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~----------~~~v~~~~~~ 235 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD-----------IKPANMEEL----------TEVITAAEFH 235 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE-----------CCCSSGGGC----------CCCEEEEEEC
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee-----------ccccccccc----------CcceEEEEEC
Confidence 9999999999998 6788 799999999974322221100 000001112 4568889998
Q ss_pred CCC-CEEEEeC-CCcEEEEeccCccE----EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 321 HSR-AKVWSAG-FLSFALWDARTREL----LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 321 ~~~-~~V~s~s-~~tI~lWD~~tg~~----l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
+++ ..+++++ +++|++||+++++. +.++..+.... .
T Consensus 236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------------------~----------- 277 (447)
T 3dw8_B 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS---------------------------N----------- 277 (447)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------------------------------------
T ss_pred CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc---------------------------c-----------
Confidence 887 7788776 67899999998875 34443221100 0
Q ss_pred CcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-C-CCeeeEeecCCccE---------
Q 003217 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAV--------- 462 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V--------- 462 (838)
...+..+...|.+++++|+|. |++++. ++|++||+ + ++++.++.+|...+
T Consensus 278 -----------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 278 -----------------RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp -----------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred -----------------cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 001234556788999999998 677777 99999999 5 88999999986432
Q ss_pred --------EEEEEcCCEEEEEeeCCeEEEEeCCCcccccccc---------------------------------cccCE
Q 003217 463 --------QCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVA---------------------------------HSSPV 501 (838)
Q Consensus 463 --------~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~g---------------------------------H~~~V 501 (838)
.+++++|++|++|+.||+|++||+.+.....+.+ +...|
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 2455689999999999999999987432223332 34567
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 502 IKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
..+++ ++.+|++++.|+ +.+|.-
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred eEEEECCCCCEEEEEecce-eeeecc
Confidence 77875 677888888775 778763
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=4.8e-24 Score=232.10 Aligned_cols=240 Identities=19% Similarity=0.220 Sum_probs=175.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCccCCCCCccee-EEeccccccEEEEEEecC---CC-EEEeeCC
Q 003217 191 VSSVMCMVGDEASG-VVWSGHR---DGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSY---GD-LWSGSEG 261 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~d---G~-L~SgS~D 261 (838)
..+|.|++|+|++. ++++|+. ||+|++||+.++ +.. ....+|..+|++++|+|+ |. |++|+.|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--------DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--------cccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 78999999999985 5667777 999999999986 232 233489999999999998 45 8999999
Q ss_pred CcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE------EcCCCCEEEEeC-CCc
Q 003217 262 GGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL------SDHSRAKVWSAG-FLS 333 (838)
Q Consensus 262 gtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la------s~~~~~~V~s~s-~~t 333 (838)
++|++||+.+.. ....+.. | ...+.++. +++++..+++++ +++
T Consensus 90 g~i~iwd~~~~~~~~~~~~~-------------------~----------~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKG-------------------H----------KEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp SCEEEECTTSCSSCSEEECC-------------------C----------SSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred CeEEEEeCCCCCccEEEEEe-------------------c----------ccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 999999997754 2222211 1 23344442 345666777776 678
Q ss_pred EEEEeccCcc-EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc
Q 003217 334 FALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (838)
Q Consensus 334 I~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~ 412 (838)
|++||+.+++ .+..+..+..
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~----------------------------------------------------------- 161 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQG----------------------------------------------------------- 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTT-----------------------------------------------------------
T ss_pred EEEEeCCCCCCcceeccccCC-----------------------------------------------------------
Confidence 9999998876 3333322110
Q ss_pred CccccCCCceEEEE----EcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE-----cCCEEEEEeeCCeEE
Q 003217 413 GGFGDDNRRTEALT----TSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-----FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 413 g~~~~~~~~v~ala----~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-----dG~~LasGs~DgtIr 482 (838)
.....+.+++ +++++. +++|+.|+.|++||+..........|...|.++++ ++.+|++|+.||.|+
T Consensus 162 ----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp ----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 0011233344 667776 78999999999999954333455678999999975 578999999999999
Q ss_pred EEeCC-Cccccccc-----ccccCEEEEEe--CCC-EEEEEcCCCCeeeeecCCCCC
Q 003217 483 VLDLE-GNLLGGWV-----AHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 483 lWD~~-g~~i~~l~-----gH~~~V~sla~--dg~-~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+||++ ++++..+. +|...|.++++ +++ ++++++.|+.|++||+.....
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 99987 55555554 99999999985 555 799999999999999876543
No 96
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=1.7e-23 Score=232.01 Aligned_cols=265 Identities=9% Similarity=0.051 Sum_probs=182.9
Q ss_pred eeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEE
Q 003217 134 FLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~-~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaS 208 (838)
.+.+++.. + ..|++ +.|+.|+|||+.+...... +....| ..+|.|++|+| ++++|++
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h-~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGP-GDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCST-TCBEEEEEEETTEEEEEEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCc-CCceeEEEeCCCCCCEEEE
Confidence 45566654 3 34555 5689999999975432211 111123 78999999999 7899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEec---cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
|+.||+|++||+.+. ....+. +|...|++++|+|+++ |++|+.|++|++||+.. .....+
T Consensus 137 ~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~------ 200 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS---------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-HEIFKE------ 200 (383)
T ss_dssp EETTTEEEEEETTSC---------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-CEEEEE------
T ss_pred EeCCCEEEEEECCCC---------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-CEEEEe------
Confidence 999999999999863 444554 4458999999999998 78999999999999842 221111
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccC----ccEEEEEecCCceEEee
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDART----RELLKVFNIDGQIENRV 358 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~t----g~~l~~l~~~~~~~~~~ 358 (838)
.+| ...+.++++.+++. .+++++ +++|++||+++ +.++..+. +...+..+
T Consensus 201 -------------~~h----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~ 256 (383)
T 3ei3_B 201 -------------KLH----------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAA 256 (383)
T ss_dssp -------------ECS----------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEE
T ss_pred -------------ccC----------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEE
Confidence 112 45678888888887 777776 67999999998 67777663 43333444
Q ss_pred ecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccc----------------
Q 003217 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG---------------- 416 (838)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~---------------- 416 (838)
.+++. ++..++++..++..+++.. + .+.
T Consensus 257 ~~s~~------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 257 YFNPT------------------------------DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EECTT------------------------------TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEcCC------------------------------CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 44440 2222233333333333320 0 000
Q ss_pred -cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec--CCccEEEEE--EcCCEEEEEeeCCeEEEEeCCC
Q 003217 417 -DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 417 -~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (838)
.....+..++++|||++ +|+.|++|++||+ ++++++++.+ |...+.+++ ++|++|++|+ |++|+|||+++
T Consensus 307 ~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 11234556888999988 9999999999999 7999999987 456666655 4789999996 99999999863
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=1.7e-23 Score=255.00 Aligned_cols=306 Identities=14% Similarity=0.150 Sum_probs=214.9
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ +..|.+ +.|+.|+|||+.+...... + ..| .++|.|++|+|++++|++|+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------~--~~~-~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------I--QVT-ETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-SSCEEEEEEEGGGTEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------E--ecC-CCcEEEEEEeCCCCEEEEEe
Confidence 35555554 445555 4588999999876433211 1 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+|++||+.++ +....+.+|.+.|++++|+|+|. |++|+.||+|++|++.+.......
T Consensus 75 ~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----------- 135 (814)
T 3mkq_A 75 DDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT----------- 135 (814)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-----------
T ss_pred CCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-----------
Confidence 9999999999987 67788899999999999999997 889999999999999764221110
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+.+| ...+.++++++ ++..+++++ +++|++||+.+++....+..+..
T Consensus 136 -------~~~~----------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~-------------- 184 (814)
T 3mkq_A 136 -------FEGH----------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE-------------- 184 (814)
T ss_dssp -------EECC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT--------------
T ss_pred -------EcCC----------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC--------------
Confidence 0111 34577888877 566777666 68999999988776555543210
Q ss_pred cccceeeEEEecCCCCcceeeeeEee--cCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCc-EEEEEC
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGA 438 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~-l~Sgs~ 438 (838)
.....+.+.+ .+..++++..++..+++. .+ .+..|...|.+++++|++. +++|+.
T Consensus 185 ----------------~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 185 ----------------RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp ----------------TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred ----------------CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 0111223333 344556666666666654 11 2345777889999999986 789999
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC--EEEEEeeCCeEEEEeCCC-c----------cc-----------
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS--QIWVGYMNGIVQVLDLEG-N----------LL----------- 491 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~--~LasGs~DgtIrlWD~~g-~----------~i----------- 491 (838)
||+|++||+ +++++.++..|...|.++++ +|+ .+++ +.++.+.+|++.. . .+
T Consensus 249 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (814)
T 3mkq_A 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASD 327 (814)
T ss_dssp TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEE-EETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTC
T ss_pred CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEE-EeCCCEEEEEcCCCCceeEECCCCCEEEECccccccee
Confidence 999999999 68999999999999999875 455 3444 4577788888541 1 11
Q ss_pred ----------------------ccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 492 ----------------------GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 492 ----------------------~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+..|...|.+++ ++|+++++++ |+.+++|++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 328 IFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred eeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 11133444566666 4777888877 88899998643
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.4e-23 Score=224.18 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=199.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ ++.|++ +.|+.|++||+.+...... + ..| ..+|.+++|+|++++|++|+
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----------------L--DGH-TGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------h--hhc-CCcEEEEEEcCCCCEEEEEe
Confidence 45566654 445665 4689999999876443211 1 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC-----CcEEEEECCCcceeeecCCC-ce
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-----GGIKIWPWEAIEKALSLKPE-ER 283 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-----gtIrvWd~~~~~~~~~~~~~-~~ 283 (838)
.||+|++||+.++ +....+. |...|.+++|+|+|+ |++++.+ +.|++||+........+... ..
T Consensus 94 ~dg~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 94 ADYSIKLWDVSNG--------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp TTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CCCeEEEEECCCC--------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 9999999999987 5556665 889999999999998 7888888 99999998653321111000 00
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC-ccEEEEEecCCceEEeeecc
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s 361 (838)
... .+..+. ....+.+++.++++..+++++ ++.|++||+.+ ++.+..+..+...+..
T Consensus 165 ~~~---------~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~---- 223 (369)
T 3zwl_B 165 PIH---------KIITHE--------GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD---- 223 (369)
T ss_dssp CSE---------EEECCT--------TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE----
T ss_pred eee---------eccCCc--------CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE----
Confidence 000 000010 012678888888888888776 57899999999 6777777655443322
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Ccc---ccCCCceEEEEEcCCCc-EEE
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGF---GDDNRRTEALTTSIDGM-IWT 435 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~---~~~~~~v~ala~S~dg~-l~S 435 (838)
+.+.+++..++++..++..+++.. +.. ..+...+..++++|++. +++
T Consensus 224 ---------------------------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 224 ---------------------------MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp ---------------------------EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred ---------------------------EEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence 233334444555556665555541 111 12556788899999998 778
Q ss_pred EECCC--------------eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC
Q 003217 436 GGANG--------------LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 436 gs~Dg--------------tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (838)
++.++ .|++||. +++++..+.+|...|+++++ +|++|++|+.||+|++||++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 88887 8999999 78999999999999999876 688999999999999999873
No 99
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=6.5e-24 Score=231.04 Aligned_cols=264 Identities=11% Similarity=0.040 Sum_probs=162.0
Q ss_pred eEEEEEcCCCC---EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccccc-------------------------EE
Q 003217 194 VMCMVGDEASG---VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-------------------------VL 245 (838)
Q Consensus 194 V~~la~s~dg~---~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~-------------------------V~ 245 (838)
|.++-+-..|- .|++++. .+|++|+..++ ...+...+|.+|+.+ |+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 115 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDA-----WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIR 115 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSS-----SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEE
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCC-----ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceE
Confidence 44454443333 5667766 58999998875 234567778877754 55
Q ss_pred EEEEecC----CC-EEEeeCCCcEEEEECCCcceeee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE
Q 003217 246 SLCISSY----GD-LWSGSEGGGIKIWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (838)
Q Consensus 246 slafs~d----G~-L~SgS~DgtIrvWd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (838)
+|+|+|| ++ +++++. +++||++.+++...+ ...+...+..+.+..... .......++..+..+++
T Consensus 116 sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-------~~~s~~~~~~~v~~l~f 186 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-------GKENQFLMPPEETILTF 186 (356)
T ss_dssp EECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-------EEEEEEECCCSSCEEEE
T ss_pred EEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-------eeeeeccCCCceeeEEe
Confidence 6666777 55 567664 478888865443333 223333433332211100 00011123455666666
Q ss_pred cC---CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 320 DH---SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 320 ~~---~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
++ ++..+++++ |++|+|||++||+++++|.++..... ....+.|++++
T Consensus 187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~----------------------------~v~~vafSpdG 238 (356)
T 2w18_A 187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA----------------------------SVCHKAYSEMG 238 (356)
T ss_dssp EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C----------------------------CCEEEEEEETT
T ss_pred eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee----------------------------eeEEEEECCCC
Confidence 55 667888877 68999999999999999875432100 00012333332
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEe-----ecCCccEEEEEE
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDF-----QYLPFAVQCLCT 467 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl-----~~H~~~V~sls~ 467 (838)
...++++ .+++ .++||+.|++|++||. +|+++.++ .+|...+.+...
T Consensus 239 ~~lvs~s-------------------------~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 239 LLFIVLS-------------------------HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp EEEEEEC-------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred CEEEEec-------------------------cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 2111111 0111 2679999999999999 78888776 378777777777
Q ss_pred cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEE-EEE--eCCCEEEEEcCCCCeeeeec
Q 003217 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI-KMA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~-sla--~dg~~l~S~S~DgtIrlWdl 525 (838)
+|..+++|+.|++|+|||+. |++++++.+|.+.|. +++ +||++|+|||.|++||+||+
T Consensus 294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 79999999999999999997 889999999998765 355 58899999999999999995
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-24 Score=263.38 Aligned_cols=238 Identities=12% Similarity=0.053 Sum_probs=184.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
.++|.|++|+|+|++|++|+.||+|++||+.++. .+....+.+|.++|++|+|+++ |+ |+||+.||+|++|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 7899999999999999999999999999997431 1556788999999999999988 76 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++..... . .+.+| ...+.+++++++ +..+++++ +++|++||+.++..
T Consensus 83 d~~~~~~~~~--------~---------~~~~h----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 83 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEETTEEEEE--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ECCCCccccc--------c---------cccCC----------CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 9866431100 0 01111 456888888887 77888776 67999999987632
Q ss_pred E--EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 345 L--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 345 l--~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
. ..+.. |...|
T Consensus 136 ~~~~~~~~-------------------------------------------------------------------~~~~v 148 (753)
T 3jro_A 136 TSPIIIDA-------------------------------------------------------------------HAIGV 148 (753)
T ss_dssp CCCEEEEC-------------------------------------------------------------------CSSCE
T ss_pred cceeEeec-------------------------------------------------------------------CCCce
Confidence 1 11111 11223
Q ss_pred EEEEEcC-------------CC-cEEEEECCCeEEEEcC-CC----CeeeEeecCCccEEEEEE--c---CCEEEEEeeC
Q 003217 423 EALTTSI-------------DG-MIWTGGANGLLLQWDP-NG----NRLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~-------------dg-~l~Sgs~DgtIrlWD~-~g----~~l~tl~~H~~~V~sls~--d---G~~LasGs~D 478 (838)
.+++++| ++ .+++|+.||+|++||+ ++ .++.++.+|...|+++++ + |++|++|+.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 3344444 34 4899999999999999 55 566788899999999975 5 7899999999
Q ss_pred CeEEEEeCCC-c-----ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 479 GIVQVLDLEG-N-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 479 gtIrlWD~~g-~-----~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
|+|++||+.. + .+....+|.+.|+++++ +++++++++.||.|++|++...
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999863 2 45556679999998885 7889999999999999998753
No 101
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.8e-23 Score=217.84 Aligned_cols=266 Identities=17% Similarity=0.252 Sum_probs=188.9
Q ss_pred eeEEEEe-cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVC-TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~-~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+.+++. +++.|++ +.|+.|++||+.+...... ...+ ..+|.+++|+|++++|++|+.
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~-~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV-------------------VYTG-QGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE-------------------EEEC-SSCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE-------------------eecC-CccEEEEEECCCCCEEEEecC
Confidence 3445544 4556666 5689999999865432211 1123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
||.|++|++.... ..+....+.+|...|++++|+ ...|++|+.|++|++||. ......+..
T Consensus 80 dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~--~~~~~~~~~----------- 140 (313)
T 3odt_A 80 DTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKE--GSLVYNLQA----------- 140 (313)
T ss_dssp TSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEET--TEEEEEEEC-----------
T ss_pred CCeEEEEEeeecC-----CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcC--CcEEEeccc-----------
Confidence 9999999987641 124466788999999999993 234899999999999993 222111111
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEec-CCceEEeeecccCccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~-~~~~~~~~~~s~~~~~~~ 368 (838)
+ ...+..+...+ ++..+++++ ++.|++|| .++.+..+.. +...
T Consensus 141 --------~----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~-------------- 186 (313)
T 3odt_A 141 --------H----------NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDV-------------- 186 (313)
T ss_dssp --------C----------SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSC--------------
T ss_pred --------C----------CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCccc--------------
Confidence 1 33455555544 566777666 67899999 4555555543 2221
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCcEEEEECCCeE
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~l~Sgs~DgtI 442 (838)
...+.+.+.+. .+++..++..+++. .+ .+..|...+.+++++|++++++|+.||+|
T Consensus 187 -----------------i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 187 -----------------VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp -----------------EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEE
T ss_pred -----------------EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEE
Confidence 12234444444 55666666666654 11 34457788999999999999999999999
Q ss_pred EEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccc
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL 491 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i 491 (838)
++||+ ++++++.+..|...|.++++ +|+ +++|+.||.|++||++ ++.+
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999 78999999999999999976 566 6678999999999987 4443
No 102
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=6.8e-23 Score=224.61 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=192.5
Q ss_pred eEEEEec--CCEEEEe-cCCCEEEEeCCCCc--cccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 135 LRTIVCT--EEQLWAG-GENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 135 ~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
+.+++.+ ++.|+++ .|+.|++||+.+.. ... .+. .| ..+|.+++|+|++++|++|
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-----------------ELK--EH-NGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-----------------EEE--CC-SSCEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-----------------eec--CC-CCcccEEEEeCCCCEEEEE
Confidence 4444443 4466665 68999999987542 111 111 23 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.||+|++||+.++. ......+.+|...|++++|+|+|+ |++|+.|++|++||+.+....... ..
T Consensus 71 ~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~- 136 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------KH- 136 (372)
T ss_dssp ETTSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------EE-
T ss_pred cCCCeEEEEECCCCe------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------ee-
Confidence 999999999998752 122445678999999999999998 789999999999999764311000 00
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc------------------CccEEEEEe
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR------------------TRELLKVFN 349 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~------------------tg~~l~~l~ 349 (838)
....| ...+.++++.+++..+++++ ++.|++||+. +++++..+.
T Consensus 137 -------~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 137 -------IKKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp -------ECTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred -------eeccc----------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 00011 44688888888888888876 6789999965 444444443
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ 423 (838)
.+.. .+..+.+.+++..++++..++..+++. .+ .+..+...+.
T Consensus 200 ~~~~-------------------------------~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 200 SSCG-------------------------------WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp CCSS-------------------------------CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred CCCC-------------------------------eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 3322 223345555555667777777666664 12 3445677899
Q ss_pred EEEEcCCCcEEEEECCCeEEEEcC-C--CC--ee------------------------------------eEe-ecCCcc
Q 003217 424 ALTTSIDGMIWTGGANGLLLQWDP-N--GN--RL------------------------------------QDF-QYLPFA 461 (838)
Q Consensus 424 ala~S~dg~l~Sgs~DgtIrlWD~-~--g~--~l------------------------------------~tl-~~H~~~ 461 (838)
+++++|++.+++++.|+.|++||+ + |+ ++ ..+ .+|...
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 999999999766669999999999 5 31 11 223 489999
Q ss_pred EEEEE---EcC---CEEEEEeeCCeEEEEeCC
Q 003217 462 VQCLC---TFG---SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 462 V~sls---~dG---~~LasGs~DgtIrlWD~~ 487 (838)
|++++ .+| .+|++|+.||+|++||++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 99996 356 899999999999999986
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.3e-24 Score=247.12 Aligned_cols=254 Identities=6% Similarity=-0.037 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
..+|.+|+|+|||++||||+.|++|| |...+ ..+.||.+.|.+|+|+|+| .++++++|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----------~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----------KDINCNSKNLFHVKEFPLE------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----------SCCSSBGGGTEEEEEECCC------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc-----------ceecCCCccEEEEEECCCC------CcceEEEEeCC
Confidence 45899999999999999999999999 64443 3447999999999999998 56666666643
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
.. ..+.+. +...|.+++.+++|..+++++ +++|++||..+ ++..+.
T Consensus 76 ~~-~~~~~~------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 76 QN-GLLNSQ------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp SS-CSSTTS------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred Cc-eEeecC------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 21 111111 134688899999999998887 68999999654 555554
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCc-----------c-
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG-----------F- 415 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~-----------~- 415 (838)
|...+ ......++.|++++...++|..+|..++|. .+. +
T Consensus 123 -~~~~~--------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -SKGNL--------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -CSSCS--------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -CCCcc--------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 22110 011233577888888888888888877776 222 1
Q ss_pred ---ccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCC-C---eeeEee-cCCccEEEEEEcCCEEEEEeeCCeEEEEeCC
Q 003217 416 ---GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNG-N---RLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 416 ---~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g-~---~l~tl~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (838)
.+|...|.+++++||| +++++.|++|++||+.+ + ..+++. +|...|.++++.|++|++++ +++|++||+.
T Consensus 176 ~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETT
T ss_pred cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECC
Confidence 4566799999999999 99999999999999954 4 235674 78899999988788999987 7999999998
Q ss_pred Cccccccc-ccccCEEEEEe----CCCEEEEEcCCCCeeeeecC
Q 003217 488 GNLLGGWV-AHSSPVIKMAV----GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 488 g~~i~~l~-gH~~~V~sla~----dg~~l~S~S~DgtIrlWdl~ 526 (838)
++.+..+. +|.+.|+.|++ |++.+++++.||+ |+|.+.
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66553333 89999998876 5567999999999 999974
No 104
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=2.5e-22 Score=222.34 Aligned_cols=331 Identities=12% Similarity=0.095 Sum_probs=193.0
Q ss_pred eeEEEEec---CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEE
Q 003217 134 FLRTIVCT---EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~---~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaS 208 (838)
.+.+++.. ++.|++ +.|+.|++||+.+...... ... .............| ..+|.+++|+| ++++|++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-----YTC-KAVCSIGRDHPDVH-RYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-----EEE-CEEEEECTTCTTCC-SSCEEEEEECTTCTTCEEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-----Eec-cccccccccccccC-CCcEEEEEEccCCCcEEEE
Confidence 45555554 345665 4589999999976543221 000 00000000000123 77999999999 7789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC---C-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
|+.||+|++||+.++ +....+ .|...+.++.+++.+ . +++|+.|+.|++||+.+......+.
T Consensus 118 ~~~d~~i~iwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----- 183 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL--------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ----- 183 (408)
T ss_dssp EETTSEEEEEETTTT--------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----
T ss_pred EeCCCeEEEeeCCCC--------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----
Confidence 999999999999986 444444 478899999999854 3 7899999999999997654322221
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCcc-EEEEEecCCceEEeeecc
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s 361 (838)
+| ...+.++++.+++. .+++++ ++.|++||++++. ++..+..+....
T Consensus 184 --------------~~----------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------ 233 (408)
T 4a11_B 184 --------------GH----------RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK------ 233 (408)
T ss_dssp --------------CC----------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS------
T ss_pred --------------CC----------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc------
Confidence 11 44678888888777 466665 6899999998875 334443221100
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Cccc----c-----CCC-ceEEEEEcC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGFG----D-----DNR-RTEALTTSI 429 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~~----~-----~~~-~v~ala~S~ 429 (838)
..... .........+..+.+.+++..++++..++..+++.. +... . ... ....+....
T Consensus 234 ---~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 234 ---SQAVE-------SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp ---CCCTT-------TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred ---ceeec-------cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 00000 000112233446677777777888888887777651 1110 0 001 111233344
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (838)
.+.+++++.|+.|++||+ +++++..+.+|...|+++++ +|++|++|+.||.|++||++ ++.+.....+... ..+.
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~ 382 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLN 382 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------
T ss_pred CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccc
Confidence 566888888999999999 78999999999999999865 68899999999999999987 5555544443322 2222
Q ss_pred e-CCCEEEEEcCCCCeeeeecC
Q 003217 506 V-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 506 ~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
. ......+.+.|+.+++|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------
T ss_pred cccceeecccCccCceeecCCc
Confidence 2 33345567789999999853
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=231.65 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=177.2
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCccCCCCCcceeEEec--cccccEEEEEEecCCC-EEEeeCCCcE
Q 003217 191 VSSVMCMVGDEASGVV-WSGHRDGRIMCWKMN--ARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~--~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtI 264 (838)
.+.|.|++|+|++++| ++|+.||+|++||+. ++ +....+. +|...|++|+|+|+|+ |++|+.|+.|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 4479999999999996 999999999999998 65 4555555 6779999999999998 7899999999
Q ss_pred EEEECCCcceee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC---CCEEEEeC-CCcEEEEec
Q 003217 265 KIWPWEAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDA 339 (838)
Q Consensus 265 rvWd~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~V~s~s-~~tI~lWD~ 339 (838)
++|++.+..... ... .+.+| ...+.+++++++ +..|++++ +++|++||+
T Consensus 174 ~~~~~~~~~~~~~~~~----------------~~~~h----------~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQE----------------PILGH----------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEETTSCCCSSCCCC----------------CSEEC----------SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEecCCcccccccce----------------eeecc----------cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 999986643211 000 01111 446778888887 76777776 679999999
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
.+++++..+. .+|.
T Consensus 228 ~~~~~~~~~~------------------------------------------------------------------~~h~ 241 (450)
T 2vdu_B 228 PQCFIVDKWL------------------------------------------------------------------FGHK 241 (450)
T ss_dssp SCTTCEEEEC------------------------------------------------------------------CCCS
T ss_pred CCCceeeeee------------------------------------------------------------------cCCC
Confidence 8877644321 1233
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC-------------------------CccEEEEEE--cCC
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------PFAVQCLCT--FGS 470 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H-------------------------~~~V~sls~--dG~ 470 (838)
..|.+++|+ ++. |++|+.|++|++||+ ++++++++..+ ...|.++++ +|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 446678888 776 899999999999999 78988888643 346777755 688
Q ss_pred EEEEEe-eCCeEEEEeC--C-C---cccccccccccCEEEEEeCCC-EEEEEcC-------CCCeeeeecCC
Q 003217 471 QIWVGY-MNGIVQVLDL--E-G---NLLGGWVAHSSPVIKMAVGAG-YIFTLAN-------HGGIRGWNVTS 527 (838)
Q Consensus 471 ~LasGs-~DgtIrlWD~--~-g---~~i~~l~gH~~~V~sla~dg~-~l~S~S~-------DgtIrlWdl~s 527 (838)
+|++++ .|+.|+|||+ . + +++..+.+| +.|.+++++++ .+++.+. +..|++|.+..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999998 8999999999 4 4 467788888 88999997654 4445432 55689988653
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.8e-23 Score=232.61 Aligned_cols=291 Identities=12% Similarity=0.135 Sum_probs=183.3
Q ss_pred eeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 134 FLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 134 ~~~~l~~~~---~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.+.+++... ..|.+ +.|++|+|||+.+.....+ ....+.. .| .++|.|++|+|++++|++|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------~~~~~~~-~h-~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------------YSSSLTY-DC-SSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------------CSCSEEE-EC-SSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------------cceeeec-cC-CCCEEEEEEeCCCCEEEEE
Confidence 466666544 35555 5699999999865211100 0001111 23 7899999999999999999
Q ss_pred eCCCcEEEEECC---CCccCCCCCcceeEEecc------------ccccEEEEE--EecCCC-EEEeeCCCcEEEEECCC
Q 003217 210 HRDGRIMCWKMN---ARLLDSDDGFGEVLSWQA------------HRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 210 s~DGtIrvWd~~---~g~~~~~~~~~~~~~l~g------------H~~~V~sla--fs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
+.||+|++||++ ++ +....+.+ |...+.++. +++++. |++|+.|++|++||+.+
T Consensus 130 s~dg~i~vwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQE--------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp ETTSEEEEEEEEEEEET--------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred eCCCEEEEEEeccccCC--------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 999999999995 33 22222222 556677777 456776 78999999999999977
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe-
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN- 349 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~- 349 (838)
.+....+... .| ...+.++++++++..+++++ +++|++||+++++++.++.
T Consensus 202 ~~~~~~~~~~-----------------~h----------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 202 LERLQIIENS-----------------PR----------HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp CCEEEEEECC-----------------GG----------GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred CeeeEEEccC-----------------CC----------CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 5433222110 01 45688899988888888877 5789999999999998886
Q ss_pred cCCceEEeeecccC----ccccc--ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--------cCcc
Q 003217 350 IDGQIENRVDMSLL----PDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--------KGGF 415 (838)
Q Consensus 350 ~~~~~~~~~~~s~~----~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~ 415 (838)
.+...+..+.+.+. ....+ ..+-.+++|... ..+.. ..+.++...+..+.. ...+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV-KGHCQ----------YAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT-TTEEE----------EEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC-CCcEE----------EEEEcCCCCCccceeccccccccccee
Confidence 44433344422221 11100 111111122111 00000 011111111100000 0122
Q ss_pred cc--CCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec-----------------------------------
Q 003217 416 GD--DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY----------------------------------- 457 (838)
Q Consensus 416 ~~--~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~----------------------------------- 457 (838)
.+ |...|.+++++++..|++|+.|++|++||+ ++++++.+.+
T Consensus 324 ~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 324 CGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred cccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 33 666788999994445899999999999999 7888877776
Q ss_pred --CCccEEEEEE--c--CCEEEEEeeCCeEEEEe
Q 003217 458 --LPFAVQCLCT--F--GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 458 --H~~~V~sls~--d--G~~LasGs~DgtIrlWD 485 (838)
|.+.|+++++ + +.+|++|+.||+|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999865 4 55999999999999995
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=2.4e-23 Score=236.10 Aligned_cols=246 Identities=14% Similarity=0.157 Sum_probs=187.4
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIr 265 (838)
.++|.+++|+|+ +.+|++|+.||.|++|++....... .........+.+|.+.|++|+|+|++. |++|+.||+|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 789999999997 6899999999999999997621000 001256678899999999999999986 78999999999
Q ss_pred EEECCCcceeee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCc
Q 003217 266 IWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 266 vWd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg 342 (838)
+|++.+...... ... .. .+.+| ...+.+++..+ .+..+++++ ++.|++||++++
T Consensus 208 vwd~~~~~~~~~~~~~----~~---------~~~~h----------~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 208 LWDINATPKEHRVIDA----KN---------IFTGH----------TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp EEETTSCCBGGGEEEC----SE---------EECCC----------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEeCCCCCCCCceecc----ce---------eecCC----------CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999976321100 000 00 01111 44678888877 556776765 689999999865
Q ss_pred c---EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 343 E---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 343 ~---~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
. .+.. +..|.
T Consensus 265 ~~~~~~~~-------------------------------------------------------------------~~~~~ 277 (430)
T 2xyi_A 265 NTSKPSHT-------------------------------------------------------------------VDAHT 277 (430)
T ss_dssp CSSSCSEE-------------------------------------------------------------------EECCS
T ss_pred CCCcceeE-------------------------------------------------------------------eecCC
Confidence 3 1110 11233
Q ss_pred CceEEEEEcCCCc--EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCC----
Q 003217 420 RRTEALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG---- 488 (838)
Q Consensus 420 ~~v~ala~S~dg~--l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g---- 488 (838)
..|.+++++|++. +++|+.||+|++||+ + ++++.++.+|...|.++++ +++ .|++|+.|++|+|||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 4567888999875 789999999999999 4 5788999999999999976 564 799999999999999863
Q ss_pred -----------cccccccccccCEEEEEe--CCC-EEEEEcCCCCeeeeecC
Q 003217 489 -----------NLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVT 526 (838)
Q Consensus 489 -----------~~i~~l~gH~~~V~sla~--dg~-~l~S~S~DgtIrlWdl~ 526 (838)
+++..+.+|.+.|.++++ ++. .++|++.|++|++|++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 567788899999999986 455 89999999999999975
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=2.9e-22 Score=215.42 Aligned_cols=267 Identities=12% Similarity=0.076 Sum_probs=175.5
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaS 208 (838)
.+.+++.+ +..|++ +.|+.|++||+.+...... .......| ..+|.|++|+| ++++|++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAH-DSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce---------------ecceeccC-CCcEEEEEEcCCCCCCEEEE
Confidence 46666654 445665 5589999999975321100 00001123 78999999999 6999999
Q ss_pred EeCCCcEEEEECCCCccC-CCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 209 GHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~-~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
|+.||+|++||+.++... .....+....+.+|.+.|++++|+|+ +. |++|+.|++|++||+.+.+....+.....
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~- 155 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE- 155 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-
Confidence 999999999999875210 00112346678899999999999999 87 78999999999999977543211110000
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC---CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
.. ...+ ........+.++...+. +..+++++ ++.+.+|+..+++.....
T Consensus 156 ~~-------~~~~--------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (351)
T 3f3f_A 156 MK-------VLSI--------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA------------ 208 (351)
T ss_dssp EE-------SCSC--------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE------------
T ss_pred cc-------cccc--------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee------------
Confidence 00 0000 00011345677777765 66666666 456666665554431110
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-----cEEE
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-----MIWT 435 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-----~l~S 435 (838)
.+..|...|.+++++|++ .|++
T Consensus 209 -----------------------------------------------------~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 209 -----------------------------------------------------KLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp -----------------------------------------------------ECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred -----------------------------------------------------ecCCCCcceeEEEECCCCCCcceEEEE
Confidence 012344456677777876 3778
Q ss_pred EECCCeEEEEcC-CC----------------------------------------------CeeeEeecCCccEEEEEE-
Q 003217 436 GGANGLLLQWDP-NG----------------------------------------------NRLQDFQYLPFAVQCLCT- 467 (838)
Q Consensus 436 gs~DgtIrlWD~-~g----------------------------------------------~~l~tl~~H~~~V~sls~- 467 (838)
|+.||+|++||+ ++ +++.++.+|...|+++++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 888888888887 33 677888899999999976
Q ss_pred -cCCEEEEEeeCCeEEEEeCC-Cc---cccccccc
Q 003217 468 -FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAH 497 (838)
Q Consensus 468 -dG~~LasGs~DgtIrlWD~~-g~---~i~~l~gH 497 (838)
+|++|++|+.||+|+|||++ ++ ++..+..|
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 68899999999999999987 43 34444444
No 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=4.2e-23 Score=227.90 Aligned_cols=280 Identities=13% Similarity=0.055 Sum_probs=177.7
Q ss_pred CCEEEEe-cCCCEEEEeCCCC--ccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003217 142 EEQLWAG-GENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~g-~d~~vrvWd~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvW 218 (838)
++.|.++ .|+.|+|||+.+. .... .+. .| ..+|.|++|+|++++|++|+.||+|++|
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFS--DH-DKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECC-----------------CBC--CC-SSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEE-----------------EEe--cC-CceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4456554 6999999999754 2111 121 23 7799999999999999999999999999
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
|+.++. .......+.+|...|++++|+|+|+ |++|+.|++|++||+.+...... .. .+
T Consensus 83 d~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------~~---------~~ 141 (377)
T 3dwl_C 83 EKRPDG-----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV-------SK---------HL 141 (377)
T ss_dssp -----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC-------CE---------EE
T ss_pred EcCCCC-----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee-------ee---------Ee
Confidence 998851 1235677889999999999999997 89999999999999976431000 00 00
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
.. .+...+.++++++++..+++++ +++|++||+.+++....... ....... ... ..
T Consensus 142 ~~---------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~---~~~-~~ 198 (377)
T 3dwl_C 142 KR---------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA----------SVWGSRL---PFN-TV 198 (377)
T ss_dssp CS---------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS----------CSSCSCC---CEE-EE
T ss_pred ec---------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc----------ccccccc---chh-hh
Confidence 11 0145688899988888888876 67899999975542111000 0000000 000 00
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC--------ccccCCCceEEEEEcCCCc-EEEEECCCeEEEE
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG--------GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g--------~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlW 445 (838)
.........+..+.|.+++..++++..++..+++. .+ .+..|...|.+++++|+|. |++|+.|+ +.+|
T Consensus 199 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~ 277 (377)
T 3dwl_C 199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILL 277 (377)
T ss_dssp EECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEE
T ss_pred hhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEE
Confidence 00001233344567777777778888888777765 12 2345777899999999998 45665555 5577
Q ss_pred cCC--C-Ceee----------------------------------Ee----------------ecCCccEEEEEE---cC
Q 003217 446 DPN--G-NRLQ----------------------------------DF----------------QYLPFAVQCLCT---FG 469 (838)
Q Consensus 446 D~~--g-~~l~----------------------------------tl----------------~~H~~~V~sls~---dG 469 (838)
+.. + +... .| ..|.+.|+++.+ ++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 662 2 1111 11 129999999964 23
Q ss_pred C---EEEEEeeCCeEEEEeC
Q 003217 470 S---QIWVGYMNGIVQVLDL 486 (838)
Q Consensus 470 ~---~LasGs~DgtIrlWD~ 486 (838)
. +|++|+.||+|+|||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3 7999999999999985
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.4e-22 Score=224.25 Aligned_cols=261 Identities=8% Similarity=0.004 Sum_probs=178.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd 268 (838)
.++|.|++|+|||++|++|+.|| +++|+++++ +.... .+...+..+++.+++. + ++|+.|++|+|||
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 77999999999999999999886 789998875 33333 2233577888888877 4 5788999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCc-cEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-ELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg-~~l~~ 347 (838)
+.+++....+. ....+..+...+ ..++.+.++.|++||+.++ +.+.+
T Consensus 88 ~~~~~~~~~~~------------------------------~~~~v~~v~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 88 DVKKQDVSRIK------------------------------VDAPVKDLFLSR--EFIVVSYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp TTTTEEEEEEE------------------------------CSSCEEEEEECS--SEEEEEETTEEEEEESSTTCCBSSC
T ss_pred CCCCcEEEEEE------------------------------CCCceEEEEEcC--CEEEEEEcCEEEEEECCCCceeeEE
Confidence 97754332221 023466666654 3445556789999999987 55444
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee-ecCCcEEEEec---------------
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAA--------------- 411 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~-g~~~~v~~v~~--------------- 411 (838)
+.. ......+++ ...++. |..++..+++.
T Consensus 136 ~~~---~~~~~~~s~--------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 136 DIR---FGGVCEFSN--------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CEE---EEEEEEEET--------------------------------TEEEEEESSCTTCEEEEECCC------------
T ss_pred ecc---CCceEEEEc--------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 432 000111111 000111 22222222222
Q ss_pred -------cCccccCCCceEEEEEcCCCc-EEEEECCCe-EEEEcC-CCCeeeEee-c-CCccEEEEEE--cCCEEEEEee
Q 003217 412 -------KGGFGDDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQ-Y-LPFAVQCLCT--FGSQIWVGYM 477 (838)
Q Consensus 412 -------~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dgt-IrlWD~-~g~~l~tl~-~-H~~~V~sls~--dG~~LasGs~ 477 (838)
...+..|...|.+++++|||. |++|+.|++ |++||+ +++++.++. + |...|+++++ +|++|++|+.
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 112456888999999999997 799999998 999999 799999998 6 9999999876 6899999999
Q ss_pred CCeEEEEeCC-Cc--ccccccc---------------------ccc--CEEEEEeCCCEEEEEcCCCCeeeeecCCCC
Q 003217 478 NGIVQVLDLE-GN--LLGGWVA---------------------HSS--PVIKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 478 DgtIrlWD~~-g~--~i~~l~g---------------------H~~--~V~sla~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
|++|+|||++ +. ....+.+ +.. .+.+...|++.+++++.||.+++|++....
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999986 21 1111111 111 232333578899999999999999986533
No 111
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.90 E-value=4e-23 Score=234.49 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=186.1
Q ss_pred cCcccccCCCcccccCcccccCCCC--CCCceeecCCCCCccccCceeEEEEec---CCEEEE-ecCCCEEEEeCCCCcc
Q 003217 90 LPEYIGKGGDIPMFKPPVRAALHPA--RPPSLEVKPHPLRETQIGCFLRTIVCT---EEQLWA-GGENGLRVWNLKELYD 163 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~l~~-g~d~~vrvWd~~~~~~ 163 (838)
.+..|+.|+.+|. |+-|-... .+..+.+..| ...+.+|+.. +..|++ +.|++||+||+++...
T Consensus 131 ~~~~lasGs~dg~----i~lWd~~~~~~~~~~~~~gH-------~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGSKGGD----IMLWNFGIKDKPTFIKGIGA-------GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEETTSC----EEEECSSCCSCCEEECCCSS-------SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCCEEEEEeCCCE----EEEEECCCCCceeEEEccCC-------CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 5667777777665 33332211 1122222233 1345666654 346766 4699999999965321
Q ss_pred ccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc
Q 003217 164 ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (838)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~ 242 (838)
.. +.. ... ...+.|++|+|++++|++|+.||+|++||+.+ +++..+.+|.+
T Consensus 200 ~~------------------~~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---------~~~~~~~~h~~ 251 (435)
T 4e54_B 200 RV------------------FASSDTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---------KELWNLRMHKK 251 (435)
T ss_dssp EE------------------EECCSSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESSS---------CBCCCSBCCSS
T ss_pred eE------------------EeccCCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccCc---------ceeEEEecccc
Confidence 10 100 011 45688999999999999999999999999976 45677899999
Q ss_pred cEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 243 PVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 243 ~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
.|++|+|+|++. |++|+.|++|+|||+.+......+.. ..+| ...|.+++++
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----------------~~~h----------~~~v~~~~~s 305 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----------------SLPH----------RHPVNAACFS 305 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----------------CCBC----------SSCEEECCBC
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----------------eeec----------cccccceeEC
Confidence 999999999986 67999999999999976432211110 0111 4467788888
Q ss_pred CCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee
Q 003217 321 HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (838)
Q Consensus 321 ~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (838)
+++..|++++ |++|+|||+.++++...+..+..... .. .... ...+.
T Consensus 306 pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~--------------------~~~~-~~~~~------- 353 (435)
T 4e54_B 306 PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF----QH--------------------LTPI-KAAWH------- 353 (435)
T ss_dssp TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC----SS--------------------SCCC-BCEEC-------
T ss_pred CCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc----cc--------------------ceeE-EEEEc-------
Confidence 8888888877 68999999999988776654432100 00 0000 00011
Q ss_pred eecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcC-CCCeeeEee-cCCccEEEE---EEcCCEE
Q 003217 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCL---CTFGSQI 472 (838)
Q Consensus 400 ~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~-~g~~l~tl~-~H~~~V~sl---s~dG~~L 472 (838)
....+..+.+++++. ++++..+++|++||. +|+++.++. +|...|.++ +++|++|
T Consensus 354 ------------------~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 354 ------------------PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp ------------------SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred ------------------CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 111122344556655 345556678999999 789888765 688888776 3478999
Q ss_pred EEEeeCCeEEEEeCC-Ccc
Q 003217 473 WVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~ 490 (838)
++|+ |++|+|||++ |+.
T Consensus 416 asg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEC-SSEEEECCCC----
T ss_pred EEEc-CCcEEEEECCcCee
Confidence 9876 8899999987 554
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.9e-22 Score=225.77 Aligned_cols=246 Identities=17% Similarity=0.138 Sum_probs=179.7
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEEECC
Q 003217 194 VMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 194 V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~ 270 (838)
..+++++|+.. ++++|+.||.|++|++.... ........+.+|.++|++++|+| ++. |++|+.||+|+||++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTG----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCE----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCC----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 44578888764 45578999999999986531 11123446789999999999999 777 7899999999999997
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+......... ... .+.+| ...+.++++.+++ ..+++++ +++|++||+.+++++.++
T Consensus 113 ~~~~~~~~~~---~~~---------~~~~h----------~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 113 DGGLVLPLRE---PVI---------TLEGH----------TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTCCSSCBCS---CSE---------EEECC----------SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCccccCC---ceE---------EecCC----------CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 6432110000 000 11122 4568888988886 5777776 678999999998775544
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.. ..|...|.+++++
T Consensus 171 ~~-----------------------------------------------------------------~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 171 GP-----------------------------------------------------------------DVHPDTIYSVDWS 185 (402)
T ss_dssp CT-----------------------------------------------------------------TTCCSCEEEEEEC
T ss_pred ec-----------------------------------------------------------------CCCCCceEEEEEC
Confidence 10 1123345678899
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEe-ecCCcc-EEEEEE--cCCEEEEE---eeCCeEEEEeCC-Ccc-ccccc-c
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFA-VQCLCT--FGSQIWVG---YMNGIVQVLDLE-GNL-LGGWV-A 496 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~-V~sls~--dG~~LasG---s~DgtIrlWD~~-g~~-i~~l~-g 496 (838)
|++. |++|+.|++|++||+ +++++.++ .+|... +.++.+ +|++|++| +.|+.|++||+. ++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 9886 899999999999999 78888888 788775 676654 68899998 789999999987 333 33333 5
Q ss_pred cccCEEEEEe--CCCEEE-EEcCCCCeeeeecCCCCC
Q 003217 497 HSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~-S~S~DgtIrlWdl~s~~~ 530 (838)
|...|.++++ ++++++ +++.|++|++|++....+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 7778888874 677886 667899999999987654
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=2.3e-21 Score=214.99 Aligned_cols=251 Identities=9% Similarity=0.071 Sum_probs=186.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|+.|++||+.+...... +.+...+.|++|+|+|+.| ++++.|++|++||+.++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--- 64 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTAT---------------------IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (391)
T ss_dssp TTTTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEEE---------------------eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---
Confidence 4589999999976543211 1123468999999999876 78889999999999887
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+....+..|. .|.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 65 -----~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------------------------ 114 (391)
T 1l0q_A 65 -----NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------------------------ 114 (391)
T ss_dssp -----EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------------------
T ss_pred -----eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC------------------------
Confidence 5566666555 999999999998 5 4677889999999976543211110
Q ss_pred ceeeeecCCeEEEEEcCCCCEE-EEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V-~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
...+..++.++++..+ ++++ ++.|++||+.+++++..+..+.
T Consensus 115 ------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------ 158 (391)
T 1l0q_A 115 ------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------------------------------ 158 (391)
T ss_dssp ------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------------------------------
T ss_pred ------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------------------------------
Confidence 2245677788888766 4555 5789999999988765543211
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-E-EEEECCCeEEEEcC-CCCeeeEeecCC
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l-~Sgs~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
.+..++++|+|. + ++++.|++|++||+ +++++..+. |.
T Consensus 159 --------------------------------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 199 (391)
T 1l0q_A 159 --------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VE 199 (391)
T ss_dssp --------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred --------------------------------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cC
Confidence 123567888886 5 56778899999999 677777665 45
Q ss_pred ccEEEEEE--cCCEEEEEe---eCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEE-EEEcCCCCeeeeecCCC
Q 003217 460 FAVQCLCT--FGSQIWVGY---MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYI-FTLANHGGIRGWNVTSP 528 (838)
Q Consensus 460 ~~V~sls~--dG~~LasGs---~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l-~S~S~DgtIrlWdl~s~ 528 (838)
..+.++++ +|++|++++ .++.|++||++ ++++..+..|.. +.+++ ++++++ ++++.|++|++||+.+.
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 57777765 688999988 58999999987 677788877764 67776 467777 68899999999998764
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=8.7e-22 Score=213.48 Aligned_cols=263 Identities=11% Similarity=0.117 Sum_probs=184.9
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC-EEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSG 209 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~-~LaSG 209 (838)
.+.+++.. +..|++ +.|+.|++||+.+...... +.....+ ..+|.|++|+|+++ +|++|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRY-KHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------EEEEEEC-SSCEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeec-CCceEEEEECCCCCcEEEEE
Confidence 35555543 556666 5689999999865431100 0111123 77999999999999 99999
Q ss_pred eCCCcEEEEEC-CCCccCCCCCcceeEEecc--ccccEEEEEEecCCC-EEEeeCCCcEEEEECCC---------cceee
Q 003217 210 HRDGRIMCWKM-NARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA---------IEKAL 276 (838)
Q Consensus 210 s~DGtIrvWd~-~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~---------~~~~~ 276 (838)
+.||+|++||+ .++ ....+.+ |...|++++|+| +. |++|+.|++|++||+.+ .+...
T Consensus 76 ~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 76 TVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp ETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred cCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999 875 3477888 999999999999 76 78999999999999864 21111
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccC-ccEE--EEEecCCc
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART-RELL--KVFNIDGQ 353 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~t-g~~l--~~l~~~~~ 353 (838)
.+. ....+.+++..+++ .+.++.++.|++||+++ +... .....+..
T Consensus 146 ~~~------------------------------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 194 (342)
T 1yfq_A 146 NTK------------------------------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194 (342)
T ss_dssp SSS------------------------------SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred EEe------------------------------eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence 000 13456777776655 34344467999999988 5431 11111111
Q ss_pred eEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEec--cC----------ccccC--
Q 003217 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAA--KG----------GFGDD-- 418 (838)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~--~g----------~~~~~-- 418 (838)
....+.+.+ .+...+++..++..+++. .. .+..+
T Consensus 195 -------------------------------~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 195 -------------------------------QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp -------------------------------CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred -------------------------------ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence 112334444 444555566666555533 11 12223
Q ss_pred -------CCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC-CccEEEEEEcCCEEEEEeeCCe-EEEEe
Q 003217 419 -------NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLCTFGSQIWVGYMNGI-VQVLD 485 (838)
Q Consensus 419 -------~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H-~~~V~sls~dG~~LasGs~Dgt-IrlWD 485 (838)
...|.+++++|++. |++|+.||+|++||+ +++++.++.+| ..+|++++++|++|++|+.||+ .+.|.
T Consensus 244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 33899999999987 899999999999999 68999999998 9999999988999999999998 65555
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-22 Score=228.47 Aligned_cols=238 Identities=10% Similarity=0.028 Sum_probs=178.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---------------------------------
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------------------- 238 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------------------------------- 238 (838)
.|+.|++|+++|++|+++ .++.|++||+.++. ..+.+..|.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPN-----HWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTT-----EEEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCC-----cceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 389999999999977665 57899999998872 000233333
Q ss_pred ---------------------cccccEEEEEEecCCC-E-EEeeCCCcEEEEECC--CcceeeecCCCceeeeEEEEeec
Q 003217 239 ---------------------AHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWE--AIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 239 ---------------------gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~--~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
+|.+.|++++|+|+|+ | ++|+.|++|+|||+. ++.....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------- 144 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------- 144 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------
Confidence 4556899999999998 5 799999999999997 433221110
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
.+ .....+.++++++++..|++++ ++.|++||+.+++....
T Consensus 145 -----~~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------- 186 (450)
T 2vdu_B 145 -----RF--------CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------------------------- 186 (450)
T ss_dssp -----EE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-------------------------
T ss_pred -----cc--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-------------------------
Confidence 00 0134577888988888888877 47899999876543100
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC---Cc-EEEEECCCeEEEEcC-
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d---g~-l~Sgs~DgtIrlWD~- 447 (838)
.. ..+..|...|.+++++|+ +. |++|+.|++|++||+
T Consensus 187 ------~~--------------------------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 187 ------TQ--------------------------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp ------CC--------------------------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred ------cc--------------------------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 00 012234456778899998 85 899999999999999
Q ss_pred CCCeeeE-eecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Cccccccccc-------------------------cc
Q 003217 448 NGNRLQD-FQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-------------------------SS 499 (838)
Q Consensus 448 ~g~~l~t-l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-------------------------~~ 499 (838)
+++++.. +.+|...|+++++ +|++|++|+.|++|+|||+. ++++..+..| ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 6888887 5689999999877 68899999999999999987 6776666533 35
Q ss_pred CEEEEEe--CCCEEEEEc-CCCCeeeeec
Q 003217 500 PVIKMAV--GAGYIFTLA-NHGGIRGWNV 525 (838)
Q Consensus 500 ~V~sla~--dg~~l~S~S-~DgtIrlWdl 525 (838)
.|.+|++ +++++++++ .|++|++|++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 6888874 688999888 8999999998
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=1.8e-21 Score=212.01 Aligned_cols=265 Identities=11% Similarity=0.133 Sum_probs=178.7
Q ss_pred ceeEEEEecC-----CEEEE-ecCCCEEEEeCCC-CccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCE
Q 003217 133 CFLRTIVCTE-----EQLWA-GGENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (838)
Q Consensus 133 ~~~~~l~~~~-----~~l~~-g~d~~vrvWd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~ 205 (838)
..+.+++.+. ..|++ +.|+.|++||+.+ ..... .....| ..+|.+++|+|++++
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h-~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMH-TGPVLDVCWSDDGSK 100 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE------------------EEEEEC-SSCEEEEEECTTSSE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE------------------EEeccc-cCCEEEEEECcCCCE
Confidence 3566777654 34555 4589999999975 22110 011233 789999999999999
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE--ecCCC-EEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI--SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf--s~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
|++|+.||+|++||+.++ ....+.+|..+|++++| ++++. |++|+.|++|++||+.+.+....+..
T Consensus 101 l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 169 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSN---------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-- 169 (368)
T ss_dssp EEEEETTSEEEEEETTTT---------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--
T ss_pred EEEEcCCCcEEEEEcCCC---------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--
Confidence 999999999999999985 34457889999999999 88887 78999999999999976543222211
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
...+.++.... ...+.++.++.+++||+.+............
T Consensus 170 ----------------------------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------- 211 (368)
T 3mmy_A 170 ----------------------------PERCYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPL--------- 211 (368)
T ss_dssp ----------------------------SSCEEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSC---------
T ss_pred ----------------------------CCCceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccc---------
Confidence 11222233322 2334444567899999987654222110000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCc----ceeeecCCcEEEEeccC---------ccccCCC---------
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR----NAIMGAADAVRRVAAKG---------GFGDDNR--------- 420 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~----~~~~g~~~~v~~v~~~g---------~~~~~~~--------- 420 (838)
......+.+..... ..+++..++..+++... .+..|..
T Consensus 212 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 212 --------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp --------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred --------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence 00000111111111 14556666665555411 1222322
Q ss_pred ---ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 421 ---RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 421 ---~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
.|.+++++|++. |++|+.||+|++||+ ++++++++.+|..+|+++++ +|++|++|+.|+..+.|+
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 699999999986 899999999999999 78999999999999999876 788999999987655554
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=6.5e-23 Score=230.01 Aligned_cols=262 Identities=15% Similarity=0.077 Sum_probs=153.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEE
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--------ASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--------dg~~LaSGs~DGtIrvWd 219 (838)
+.|++||+||+.+...... .....+ ..| .+.|.+|+|+| |+++||||+.|++||+||
T Consensus 108 ~~d~~v~lw~~~~~~~~~~------------~~~~~~--~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQ------------HVLGGK--SGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ETTSCEEEEEEETTEEEEE------------EEECTT--TSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eCCCcEEEEECCCCcccee------------eeeccc--CCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 5699999999875432210 000111 134 88999999998 889999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceee--eEEEEeecee
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT--AALIVERSYI 295 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 295 (838)
+.++ .+...+.+|..+|.+++|+|++. |++|+.|++||+||+.++............. ..+......
T Consensus 173 ~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~- 243 (393)
T 4gq1_A 173 LTDE--------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP- 243 (393)
T ss_dssp EETT--------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG-
T ss_pred CCCC--------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc-
Confidence 9876 56777889999999999999874 7899999999999998754332221110000 000000000
Q ss_pred ecccceeccceeeeecCCeEEEEE-cCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccccee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
+ . .......+...+..+.. .+++..|++++ ++++++||+.+++....+..+........+.+
T Consensus 244 -~---~-~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~----------- 307 (393)
T 4gq1_A 244 -L---V-NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP----------- 307 (393)
T ss_dssp -G---C-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC-----------
T ss_pred -c---e-eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc-----------
Confidence 0 0 00000011234555554 36777888877 67999999998877665543322111100000
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc-CCCc-EEEEECCCeEEEEcC-CCC
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGM-IWTGGANGLLLQWDP-NGN 450 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S-~dg~-l~Sgs~DgtIrlWD~-~g~ 450 (838)
... . .......+..+.+. .++. +++|+.||+|++||+ +++
T Consensus 308 --------------------~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 308 --------------------NVQ-----------G------ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp --------------------SEE-----------E------ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred --------------------ccc-----------c------ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 000 0 00000111112222 2444 567888999999999 789
Q ss_pred eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 451 RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
++..+.+|..+|.+|++ ||++||+++.+ .|.||.+.
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~-Gv~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEG-SVLLTRLM 388 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESS-EEEEEEEG
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEe
Confidence 99999999999999875 79999998755 56677654
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-22 Score=221.93 Aligned_cols=229 Identities=8% Similarity=-0.020 Sum_probs=165.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 201 ~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
+++.+|+||+.||+|++||+.++ +....+. ...|.++.|+|+ ++|||.|++|++|+.......+....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCCEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence 46789999999999999999987 4455554 567888999997 99999999999999865322222111
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
.. .... + ...+...+.++++.+ ++..+++++ +++|++||+++++++..+..+
T Consensus 114 ~~-~~~~------------~------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------ 168 (343)
T 3lrv_A 114 NK-VLRE------------I------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK------ 168 (343)
T ss_dssp CC-EEEE------------E------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC------
T ss_pred cc-eeEE------------e------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC------
Confidence 10 0000 0 000134688888888 888888776 689999999998874433110
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
+...+.+++++|||. +++|
T Consensus 169 ------------------------------------------------------------~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 169 ------------------------------------------------------------SDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp ------------------------------------------------------------SSCCCCEEEECTTSCEEEEE
T ss_pred ------------------------------------------------------------CCCceEEEEECCCCCEEEEE
Confidence 111245788999987 6789
Q ss_pred ECCCeEEEEcC-CCCee-eEeec-CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc---ccccCEE--EEE
Q 003217 437 GANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV---AHSSPVI--KMA 505 (838)
Q Consensus 437 s~DgtIrlWD~-~g~~l-~tl~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~---gH~~~V~--sla 505 (838)
+.||+|++||+ +++++ .++.+ |..+|+++++ +|.+|++|+ |++|++||+. ++++..+. .|...+. +++
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 99999999999 67777 88888 9999999976 688999999 5599999987 55544444 3555544 365
Q ss_pred --eCCCEEEEEcC-CCCeeeeecCC
Q 003217 506 --VGAGYIFTLAN-HGGIRGWNVTS 527 (838)
Q Consensus 506 --~dg~~l~S~S~-DgtIrlWdl~s 527 (838)
++++++++++. |+.|++|++..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcc
Confidence 47889999988 99999999854
No 119
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-21 Score=214.15 Aligned_cols=240 Identities=11% Similarity=0.151 Sum_probs=171.2
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEE
Q 003217 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaS 208 (838)
.+.+++.+ +..|.++ .|+.|+|||+...... . ...+ ..| ..+|.|++|+++ +++|++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~--------------~~~~--~~h-~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L--------------IDTL--TGH-EGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-E--------------EEEE--CCC-SSCEEEEEECCGGGCSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-e--------------eeEe--cCC-CCcEEEEEeCCCCCCCEEEE
Confidence 46666654 4466664 5899999998632110 0 0001 123 789999999987 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+.||+|++||+.++. ......+.+|...|++++|+|+ +. |++|+.|++|++||+.+........
T Consensus 75 ~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------ 142 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 142 (379)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------
T ss_pred eccCCEEEEEEcCCCc------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------
Confidence 9999999999998861 1256778899999999999999 77 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcC-------------CCCEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+..+ ...+.+++..+ ++..+++++ ++.|++||++++.....+.
T Consensus 143 -----------~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 199 (379)
T 3jrp_A 143 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 199 (379)
T ss_dssp -----------EECC----------TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------ecCC----------CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--
Confidence 0011 34566677666 467777776 6789999997654211100
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d- 430 (838)
. .+..|...|.+++++|+
T Consensus 200 --------------------------~-----------------------------------~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 200 --------------------------S-----------------------------------TLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp --------------------------E-----------------------------------EECCCSSCEEEEEECCCC
T ss_pred --------------------------E-----------------------------------EEecccCcEeEEEECCCC
Confidence 0 02234556778999998
Q ss_pred --Cc-EEEEECCCeEEEEcC-CCC---eeeEe--ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 431 --GM-IWTGGANGLLLQWDP-NGN---RLQDF--QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~---~l~tl--~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+. |++++.||+|++||+ +++ ....+ ..|...|+++++ +|++|++|+.||.|++||+.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 66 789999999999999 443 22222 348889998865 78899999999999999986
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-22 Score=231.65 Aligned_cols=122 Identities=10% Similarity=0.060 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc-----cEEEEEEecCCC-EEEeeCCCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~-----~V~slafs~dG~-L~SgS~DgtI 264 (838)
...|.+++|+|+|++||+++.||+|++||.++ +...+. |.. .|.+++|||||+ |++|+.||+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 56899999999999999999999999999533 445566 765 499999999998 8999999999
Q ss_pred EEEECCCcce-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCcc
Q 003217 265 KIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRE 343 (838)
Q Consensus 265 rvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~ 343 (838)
+|||+.++.. ..++ ..... ++.+ ..+ +...|.+++.++++ .++++.|++|++||+.+++
T Consensus 154 kIWd~~~~~l~~~~~----i~l~t---------i~~~--~~g----h~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 154 QFFSIRKNSENTPEF----YFESS---------IRLS--DAG----SKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EEEECCCCTTTCCCC----EEEEE---------EECS--CTT----CCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred EEEECCCCccccccc----eeeee---------eecc--ccc----ccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 9999976421 0000 00000 0000 000 13468889999888 6667778999999998766
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=2.1e-21 Score=207.98 Aligned_cols=231 Identities=14% Similarity=0.174 Sum_probs=161.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE--EeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL--SWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~--~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
..||+||+++ +||+|. |++||+||+.++ +... .+.+|...|++|+|+|+|+ |+|||.|++|++|+++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg--------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSG--------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTC--------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCC--------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 5689999875 787765 999999999997 4444 4467889999999999998 7899999999999998
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-EEEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~-l~~l 348 (838)
+++....+.. | ...+.++.. .+..+++++ ++.+++|+..++.. +.++
T Consensus 98 ~~~~~~~~~~-------------------h----------~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 98 QQKRLRNMTS-------------------H----------SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp TTEEEEEEEC-------------------C----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CceeEEEecC-------------------c----------cceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 7654332221 1 112222222 345566665 46788888765432 1121
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
. .|...+..+.++
T Consensus 147 ~-------------------------------------------------------------------~~~~~~~~~~~~ 159 (318)
T 4ggc_A 147 S-------------------------------------------------------------------GHSQEVCGLRWA 159 (318)
T ss_dssp E-------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred c-------------------------------------------------------------------CccCceEEEEEc
Confidence 1 223334556677
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCC----eeeEeecCCccEEEEEE--cC-CE--EEEEeeCCeEEEEeCCCccccccccc
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG-SQ--IWVGYMNGIVQVLDLEGNLLGGWVAH 497 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~----~l~tl~~H~~~V~sls~--dG-~~--LasGs~DgtIrlWD~~g~~i~~l~gH 497 (838)
+++. +++++.|++|++||+ +++ .+.....|...|.++.. ++ .. +++|+.+++|++||...........|
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 7776 789999999999999 554 34455678889998865 33 33 45667899999999885544445567
Q ss_pred ccCEEEEE--eCCCEEEE--EcCCCCeeeeecCCCCCCc
Q 003217 498 SSPVIKMA--VGAGYIFT--LANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 498 ~~~V~sla--~dg~~l~S--~S~DgtIrlWdl~s~~~~d 532 (838)
...|..+. ++++.+++ ++.|++|++||+.+..++.
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence 77787776 46677665 4589999999998766544
No 122
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=4.8e-21 Score=216.17 Aligned_cols=246 Identities=13% Similarity=0.147 Sum_probs=174.0
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+|+.. +..|.+ +.|++|+|||+.+...... ...| ...|.|++++ +.+|++|
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~s~~--~~~l~sg 205 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSWN--SYILSSG 205 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEEE--TTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC-CCceEEEeeC--CCEEEEE
Confidence 356667665 446665 5699999999987543321 1223 6788888876 5899999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.|+++++||..... .....+.+|...|..+.++|+|. |++++.|+.|++|+..+++...... ..
T Consensus 206 s~d~~i~~~d~~~~~-------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~------~~- 271 (420)
T 4gga_A 206 SRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------QT- 271 (420)
T ss_dssp ETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS------EE-
T ss_pred eCCCceeEeeecccc-------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee------ee-
Confidence 999999999988753 55677899999999999999998 7899999999999997643211000 00
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEe--C-CCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA--G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~--s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
... ....+..+++.+.+. .++++ + |++|++||+.+++++..+..+.+
T Consensus 272 --------~~~----------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~----------- 322 (420)
T 4gga_A 272 --------FTQ----------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----------- 322 (420)
T ss_dssp --------ECC----------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-----------
T ss_pred --------ecc----------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-----------
Confidence 000 134577777766444 44443 2 67999999999988766543221
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE--CCCe
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG--ANGL 441 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs--~Dgt 441 (838)
+.++.+++++. +++++ .|++
T Consensus 323 ---------------------------------------------------------v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 323 ---------------------------------------------------------VCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp ---------------------------------------------------------EEEEEEETTTTEEEEEECTTTCC
T ss_pred ---------------------------------------------------------eeeeeecCCCCeEEEEEecCCCE
Confidence 22344555554 55554 7899
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
|++||. +++++.++.+|.+.|+++++ ||++|++|+.|++|+|||+. ....+....|...
T Consensus 346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~ 408 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKAS 408 (420)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCC
Confidence 999999 79999999999999999875 78999999999999999985 4455555555443
No 123
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.7e-21 Score=218.28 Aligned_cols=226 Identities=16% Similarity=0.153 Sum_probs=172.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-ccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
.+.++.+++ +.+++++.||+|++|++.++ +....+.. |.+.|++|+|+|+|+ |++|+.||+|++||+.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSG--------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTC--------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCC--------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 355566664 56888999999999999987 44444444 899999999999998 7899999999999997
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC-ccEEEEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVF 348 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t-g~~l~~l 348 (838)
+++....+.. | ...+.++..+ +..+++++ +++|++||+++ +..+..+
T Consensus 165 ~~~~~~~~~~-------------------~----------~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 165 SQTKLRTMAG-------------------H----------QARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp TCCEEEEECC-------------------C----------SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCeEEEEecC-------------------C----------CCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 7543322221 1 3345666663 45666665 67899999984 3322222
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
. .|...|.+++++
T Consensus 214 ~-------------------------------------------------------------------~~~~~v~~~~~~ 226 (401)
T 4aez_A 214 Q-------------------------------------------------------------------GHSSEVCGLAWR 226 (401)
T ss_dssp E-------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred c-------------------------------------------------------------------CCCCCeeEEEEc
Confidence 1 233456678899
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC-EEEEEe--eCCeEEEEeCC-CcccccccccccC
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS-QIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~-~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
|++. +++|+.|++|++||+ +++++.++..|...|.++++ ++. .+++|+ .|++|++||+. ++++..+. |...
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~ 305 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQ 305 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSC
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCc
Confidence 9887 889999999999999 68899999999999999976 354 677765 79999999987 67777774 6678
Q ss_pred EEEEEe--CCCEEEE--EcCCCCeeeeecCC
Q 003217 501 VIKMAV--GAGYIFT--LANHGGIRGWNVTS 527 (838)
Q Consensus 501 V~sla~--dg~~l~S--~S~DgtIrlWdl~s 527 (838)
|.++++ +++++++ |+.|+.|++|++.+
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 999985 7888888 55899999999865
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=2.5e-21 Score=217.75 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=191.8
Q ss_pred CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
++.++++ .|+.|++||+.+...... .....+ ..+ .+.|.+++++++++++++++.|++|++||
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~--~~~-~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEKY--KKK-LGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHHH--HTT-CCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeee------------cCcccc--ccc-CCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 4466653 367899999976543221 000001 122 66899999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
+.++ +....+.+|...|.+++|+|+|+ + ++++.|++|++||+.+++....+..
T Consensus 198 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 252 (433)
T 3bws_A 198 LKTL--------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK----------------- 252 (433)
T ss_dssp TTTC--------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------------
T ss_pred CCCc--------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------------
Confidence 9886 56777889999999999999998 5 4677899999999976543221111
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC---------CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---------FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---------~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
...+..++.++++..+++++ ++.|++||+.+++++..+...
T Consensus 253 -------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~----------------- 302 (433)
T 3bws_A 253 -------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP----------------- 302 (433)
T ss_dssp -------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-----------------
T ss_pred -------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-----------------
Confidence 11255677777777777765 568999999988764433100
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-E-EEEECCCeEEEEc
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWD 446 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l-~Sgs~DgtIrlWD 446 (838)
..+..++++|++. + ++++.|+.|++||
T Consensus 303 ---------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 303 ---------------------------------------------------GNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp ---------------------------------------------------ECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred ---------------------------------------------------CCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 0123567888884 4 5668899999999
Q ss_pred C-CCCeeeEeecCCccEEEEEE--cCCEEEEEee---------------CCeEEEEeCC-CcccccccccccCEEEEEe-
Q 003217 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM---------------NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (838)
Q Consensus 447 ~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~---------------DgtIrlWD~~-g~~i~~l~gH~~~V~sla~- 506 (838)
+ +++++..+. +...+.++++ +|++|++++. ||.|++||++ ++.+..+.++ ..+.++++
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 409 (433)
T 3bws_A 332 LKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS 409 (433)
T ss_dssp TTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC
T ss_pred CCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEc
Confidence 9 577777775 6777888865 6888998886 5799999986 6777777664 56888874
Q ss_pred -CCCEEEEEc-CCCCeeeeecC
Q 003217 507 -GAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 507 -dg~~l~S~S-~DgtIrlWdl~ 526 (838)
+++++++++ .|++|++|++.
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEET
T ss_pred CCCCEEEEEECCCCeEEEEEec
Confidence 788888776 59999999975
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.8e-22 Score=218.80 Aligned_cols=260 Identities=7% Similarity=0.046 Sum_probs=172.8
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+..+++ +.|++|++||+.+...... +. ..+|.++.++|+ ++||+.|++|++|+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~---------------------~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITT---------------------IT-TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEE---------------------EE-EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEE---------------------Ee-cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 445555 5699999999976543211 11 346778888887 999999999999987
Q ss_pred CCCccC-CCCCcceeEEe-ccccccEEEEEEec--CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 221 NARLLD-SDDGFGEVLSW-QAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 221 ~~g~~~-~~~~~~~~~~l-~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
...... +....+....+ .+|.++|.+++|+| +++ |+||+.|++|++||+.+++.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--------------- 167 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--------------- 167 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------
Confidence 642100 00000223333 37789999999999 888 78999999999999977543211100
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEE-EEEecCCceEEeeecccCccccccccee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL-KVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l-~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
+ ....+.++++++++..+++++ +++|++||+++++.+ ..+..
T Consensus 168 ----~---------~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----------------------- 211 (343)
T 3lrv_A 168 ----K---------SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----------------------- 211 (343)
T ss_dssp ----C---------SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------
T ss_pred ----C---------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------
Confidence 0 022467788888888998876 689999999887643 22211
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCe
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~ 451 (838)
.|...|.+++|+|+|. |++|+ |++|++||+ ++++
T Consensus 212 -------------------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 212 -------------------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp -------------------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred -------------------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 1445677899999998 67777 559999999 6766
Q ss_pred eeEeec---CCccEE--EEE--EcCCEEEEEee-CCeEEEEeCCCcccccccccccCEEEEEe-----CCCEEEEEcCCC
Q 003217 452 LQDFQY---LPFAVQ--CLC--TFGSQIWVGYM-NGIVQVLDLEGNLLGGWVAHSSPVIKMAV-----GAGYIFTLANHG 518 (838)
Q Consensus 452 l~tl~~---H~~~V~--sls--~dG~~LasGs~-DgtIrlWD~~g~~i~~l~gH~~~V~sla~-----dg~~l~S~S~Dg 518 (838)
++++.. |...+. +++ ++|++|++|+. |+.|+||+.+... ..|.. ..+..+.+ +.+.+++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-KNWTK--DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CSEEE--EEEEECCC----CCCCEEEEEEETT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-cceEe--cCceeEecCccccccceeEEEecCC
Confidence 655543 444443 354 46899999998 9999999985211 11111 33444432 456788888899
Q ss_pred Ceeeee
Q 003217 519 GIRGWN 524 (838)
Q Consensus 519 tIrlWd 524 (838)
++++|-
T Consensus 325 ~~~~~~ 330 (343)
T 3lrv_A 325 GIAAIL 330 (343)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 888875
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=5.1e-22 Score=216.19 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=130.0
Q ss_pred CCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEECCC-CccCCCCCcceeEEeccccccEE
Q 003217 191 VSSVMCMVGDEA----SGVVWSGHR--------------------DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVL 245 (838)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGs~--------------------DGtIrvWd~~~-g~~~~~~~~~~~~~l~gH~~~V~ 245 (838)
.+.|.+|+++|+ ++++++++. |++|++|++.. | +.+..+.+|...|+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--------~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--------GGKENQFLMPPEET 182 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--------CEEEEEEECCCSSC
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--------ceeeeeccCCCcee
Confidence 557889999999 888888764 88888888844 4 55667778888888
Q ss_pred EEEEec---CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccce---eeeecCCeEEEE
Q 003217 246 SLCISS---YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF---SSILTSDIKNLL 318 (838)
Q Consensus 246 slafs~---dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~---~~~~s~~v~~la 318 (838)
.++|++ ++. |+|||.|++|||||+.+++...++..+..+ ...+ .+.|. ...++.
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------------------v~~v~~vafSpd-G~~lvs 243 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------------------QASVCHKAYSEM-GLLFIV 243 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------------------CCCEEEEEEET-TEEEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------------------eeeeEEEEECCC-CCEEEE
Confidence 888988 556 789999999999999987655444321110 1111 12221 122222
Q ss_pred EcCCCC--EEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 319 SDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 319 s~~~~~--~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
.+++.. .+++++ +.+|++||..+++++.++... + + .
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~--------~-p-----------------~--------------- 282 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC--------L-P-----------------P--------------- 282 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEEC--------C-C-----------------T---------------
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee--------c-c-----------------C---------------
Confidence 222111 245565 579999999999887655210 0 0 0
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEE-EE--EEcCCE
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CL--CTFGSQ 471 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~-sl--s~dG~~ 471 (838)
| |...+.+..++ +..+++|+.|++|||||+ +|+++++|.+|...|. ++ ++||++
T Consensus 283 -----G----------------h~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 283 -----G----------------QAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp -----T----------------CCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred -----C----------------CcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 0 00000011111 224789999999999999 7999999999987654 34 568999
Q ss_pred EEEEeeCCeEEEEeC
Q 003217 472 IWVGYMNGIVQVLDL 486 (838)
Q Consensus 472 LasGs~DgtIrlWD~ 486 (838)
|++|+.|++|||||.
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999995
No 127
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=2.6e-20 Score=205.85 Aligned_cols=229 Identities=11% Similarity=0.093 Sum_probs=146.6
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+.+.++.+|.++|++|+|+|||+ |++|+.| .++||++++.+.......
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~------------------------------ 58 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM------------------------------ 58 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec------------------------------
Confidence 44556789999999999999999 5666655 589999866433221110
Q ss_pred cCCeEEEEEcCCCCEE-EEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceee
Q 003217 311 TSDIKNLLSDHSRAKV-WSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (838)
Q Consensus 311 s~~v~~las~~~~~~V-~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (838)
..+..+...+.+..+ .++ ++++|++||+.+++++..+..+..+ ..+.++...
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v-~~v~~~~~~------------------------ 112 (355)
T 3vu4_A 59 -RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV-KDLFLSREF------------------------ 112 (355)
T ss_dssp -SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE-EEEEECSSE------------------------
T ss_pred -CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce-EEEEEcCCE------------------------
Confidence 012223333344444 333 3579999999999998887644322 222222210
Q ss_pred eeEeecCcceeeecCCcEEEEec--cC-ccccCC-CceEEEEEcCCCcEEE--EECCCeEEEEcC-CCC-----------
Q 003217 389 FGFFQRSRNAIMGAADAVRRVAA--KG-GFGDDN-RRTEALTTSIDGMIWT--GGANGLLLQWDP-NGN----------- 450 (838)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~--~g-~~~~~~-~~v~ala~S~dg~l~S--gs~DgtIrlWD~-~g~----------- 450 (838)
.++.. ++..+++. .+ ...... .....+++++ ..++. |+.||+|++||+ +++
T Consensus 113 ---------~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 113 ---------IVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp ---------EEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC-------------
T ss_pred ---------EEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 01111 11122221 01 000000 0222345666 55554 578999999999 444
Q ss_pred -----eeeEeecCCccEEEEEE--cCCEEEEEeeCCe-EEEEeCC-Cccccccc-c-cccCEEEEEe--CCCEEEEEcCC
Q 003217 451 -----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWV-A-HSSPVIKMAV--GAGYIFTLANH 517 (838)
Q Consensus 451 -----~l~tl~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~-g-H~~~V~sla~--dg~~l~S~S~D 517 (838)
+++++.+|...|+++++ +|++|++|+.|++ |+|||+. ++++.++. + |...|.++++ +++++++++.|
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 37889999999999976 7899999999998 9999997 78889998 6 9999999985 78899999999
Q ss_pred CCeeeeecCCC
Q 003217 518 GGIRGWNVTSP 528 (838)
Q Consensus 518 gtIrlWdl~s~ 528 (838)
++|++||+..+
T Consensus 262 ~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 WTLHVFEIFND 272 (355)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEccCC
Confidence 99999998764
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.86 E-value=3.8e-20 Score=209.75 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=168.0
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 003217 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~ 221 (838)
.|++ +.|+.|++||+.+...... ..+ ..........| ..+|.+|+|+|++. +|++|+.||+|++|++.
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~--------~~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPE--------PSG-ECQPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCC--------TTC-CCCCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEEECCCCcEEEEECCCcccccC--------ccc-cCCCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 3444 4588999999965211100 000 00111122233 77999999999988 99999999999999998
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccc
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 299 (838)
++.. ..........+.+|...|.+++|+|+ +. |++|+.|++|++||+.+..... ... .+..
T Consensus 213 ~~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------~~~---------~~~~ 275 (430)
T 2xyi_A 213 ATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------PSH---------TVDA 275 (430)
T ss_dssp SCCB-GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------CSE---------EEEC
T ss_pred CCCC-CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------cee---------Eeec
Confidence 7410 00011124567899999999999994 45 6899999999999997642100 000 0011
Q ss_pred ceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCc-cEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 300 HLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
| ...+.++++.+.+. .+++++ +++|++||+++. +++.++
T Consensus 276 ~----------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---------------------------- 317 (430)
T 2xyi_A 276 H----------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---------------------------- 317 (430)
T ss_dssp C----------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------------------------
T ss_pred C----------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----------------------------
Confidence 1 45688888888776 566665 689999999863 222222
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcCCC-----
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNG----- 449 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~~g----- 449 (838)
..|...|.++.++|++. +++++.|++|++||+..
T Consensus 318 ---------------------------------------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 318 ---------------------------------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp ---------------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred ---------------------------------------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 12334566788999884 78999999999999932
Q ss_pred ----------CeeeEeecCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCCc
Q 003217 450 ----------NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 450 ----------~~l~tl~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (838)
+++..+.+|...|+++++ +++ +|++++.||.|+||++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 677888899999999976 577 8999999999999998743
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=8e-19 Score=194.50 Aligned_cols=264 Identities=10% Similarity=0.091 Sum_probs=182.6
Q ss_pred eEEEEec--CCEEEE-e-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EE
Q 003217 135 LRTIVCT--EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SG 209 (838)
Q Consensus 135 ~~~l~~~--~~~l~~-g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SG 209 (838)
+..++.+ ++.+++ + .|+.|++||+.+...... +.+...|.+++|+|+++.|+ ++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~---------------------~~~~~~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---------------------VPAGSSPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE---------------------EECCCCccceEECCCCCEEEEEE
Confidence 3455544 446655 3 689999999976543211 11134899999999999775 55
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
+.|++|++||+.++ +....+..| ..+.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 93 ~~~~~v~v~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 156 (391)
T 1l0q_A 93 MASSTLSVIDTTSN--------TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------- 156 (391)
T ss_dssp TTTTEEEEEETTTT--------EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------
T ss_pred CCCCEEEEEECCCC--------eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-------
Confidence 57799999999986 455555554 4789999999998 6 6899999999999976543221110
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
...+..+++++++..++ +++ ++.|++||+++++++..+..+
T Consensus 157 -----------------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------- 199 (391)
T 1l0q_A 157 -----------------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-------------- 199 (391)
T ss_dssp -----------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------
T ss_pred -----------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--------------
Confidence 12345677777787774 444 468999999988765443211
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE---CCCe
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG---ANGL 441 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs---~Dgt 441 (838)
..+.+++++|+|. +++++ .++.
T Consensus 200 ------------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 200 ------------------------------------------------------AAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp ------------------------------------------------------SEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred ------------------------------------------------------CCccceEECCCCCEEEEEecCcCCCc
Confidence 1133567888886 67776 6899
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEE--EcCCEE-EEEeeCCeEEEEeCC-CcccccccccccCEE------E-------
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI------K------- 503 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~L-asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~------s------- 503 (838)
|++||+ +++++..+..|.. +.+++ ++|++| ++++.|+.|++||++ ++++..+..|..+.. .
T Consensus 226 v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp EEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred EEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 999999 6888888887764 56665 468877 566789999999987 777777776655431 1
Q ss_pred ----EEeCC----------CEEEEEcCCCCeeeeecCC
Q 003217 504 ----MAVGA----------GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 504 ----la~dg----------~~l~S~S~DgtIrlWdl~s 527 (838)
...+. -.+.+.+.|.++++|++..
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 11111 2355667788888888754
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.6e-20 Score=226.75 Aligned_cols=240 Identities=11% Similarity=0.142 Sum_probs=170.3
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaS 208 (838)
.+++++.+ ++.|.+ +.|++|+|||+...... + . .....| .++|.|++|+++ +++|+|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-~--------------~--~~l~~h-~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L--------------I--DTLTGH-EGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-E--------------E--EEECCC-SSCEEEEEECCTTSCSEEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-c--------------c--eeccCC-cCceEEEEecCCCCCCEEEE
Confidence 35555543 445665 46899999998632110 0 0 011123 789999999988 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+.||+|++||+.++. ......+.+|..+|++++|+|+ |. |++|+.||+|++||+.+........
T Consensus 73 ~s~Dg~I~vwd~~~~~------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------ 140 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 140 (753)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------
T ss_pred EeCCCeEEEEECCCCc------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------
Confidence 9999999999998861 1256778899999999999999 77 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcC-------------CCCEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+.+| ...+.++++.+ ++..+++++ +++|++||++++.....+.
T Consensus 141 -----------~~~~----------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-- 197 (753)
T 3jro_A 141 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 197 (753)
T ss_dssp -----------EECC----------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------eecC----------CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--
Confidence 0011 33456666655 355666665 6899999997753211000
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d- 430 (838)
. .+..|...|.+++++|+
T Consensus 198 --------------------------~-----------------------------------~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 198 --------------------------S-----------------------------------TLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp --------------------------E-----------------------------------EECCCSSCEEEEEECCCC
T ss_pred --------------------------e-----------------------------------eecCCCCcEEEEEeccCC
Confidence 0 02234556778999998
Q ss_pred --Cc-EEEEECCCeEEEEcC-CCC-----eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 431 --GM-IWTGGANGLLLQWDP-NGN-----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~-----~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+. +++|+.||+|++||+ +++ .+.....|...|+++++ +|++|++|+.||.|++||+.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 66 799999999999999 443 33444568889998865 78899999999999999986
No 131
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.83 E-value=5.8e-19 Score=198.44 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-----EeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~-----~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
..+.|++++|++.++++++.|++|++||+.++ +... .+.+|.+.|++++|+++|+ +++++.|++|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--------eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 45669999998888888999999999999987 3444 4568999999999999998 57999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~ 343 (838)
+||+++++....+.. + ...+.++++++++..++ ++. +++|++||+.+++
T Consensus 195 ~~d~~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 195 VFDLKTLAYKATVDL-------------------T----------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEETTTCCEEEEEEC-------------------S----------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCCceEEEEEcC-------------------C----------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 999976543222110 1 23567788888887775 443 5789999999887
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
++..+..+ ..+.
T Consensus 246 ~~~~~~~~--------------------------------------------------------------------~~~~ 257 (433)
T 3bws_A 246 EIRKTDKI--------------------------------------------------------------------GLPR 257 (433)
T ss_dssp EEEECCCC--------------------------------------------------------------------SEEE
T ss_pred EEEEecCC--------------------------------------------------------------------CCce
Confidence 65443211 1134
Q ss_pred EEEEcCCCc-EEEEE--------CCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEE-EEEeeCCeEEEEeCC-Cc
Q 003217 424 ALTTSIDGM-IWTGG--------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQI-WVGYMNGIVQVLDLE-GN 489 (838)
Q Consensus 424 ala~S~dg~-l~Sgs--------~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~L-asGs~DgtIrlWD~~-g~ 489 (838)
+++++|+|. +++++ .|+.|++||+ +++.+..+ .|...+.++++ +|+++ ++++.|+.|++||++ ++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 567888885 67766 5889999999 56666655 45667777765 67755 556789999999997 56
Q ss_pred ccccccccccCEEEEEe--CCCEEEEEcC---------------CCCeeeeecCCC
Q 003217 490 LLGGWVAHSSPVIKMAV--GAGYIFTLAN---------------HGGIRGWNVTSP 528 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~--dg~~l~S~S~---------------DgtIrlWdl~s~ 528 (838)
++..+. |...+.++++ +++++++++. ||.|++||+.+.
T Consensus 337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 666664 7778888875 6778887765 579999997653
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.81 E-value=2.4e-18 Score=201.63 Aligned_cols=274 Identities=8% Similarity=-0.047 Sum_probs=182.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-EEEeeCCCcEEEEEC--CCcc
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW--EAIE 273 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~--~~~~ 273 (838)
+++|++.++++++.|++|++||..++ +.+.++. +|. +.+++|+|||+ |++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 47899999999999999999999987 5667777 454 89999999998 789999999999999 5533
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC----CCCEEEEeC--CCcEEEEeccCccEEEE
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFALWDARTRELLKV 347 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~----~~~~V~s~s--~~tI~lWD~~tg~~l~~ 347 (838)
...++.. ......+++++ ++..+++++ +.+|.+||..|++++++
T Consensus 214 ~~~~i~~------------------------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 214 KVAEIKI------------------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EEEEEEC------------------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEEEEec------------------------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 2111100 12356788888 888888887 47999999999999988
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcce-eeecCCcEEEEec-c-Cc-----cccCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAADAVRRVAA-K-GG-----FGDDN 419 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~-~~g~~~~v~~v~~-~-g~-----~~~~~ 419 (838)
+...+.......+.+. .....+.+++.+... +....++...+.. . +. ...+.
T Consensus 264 i~~~g~~~~~~~~~~~--------------------~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPE--------------------PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EECCEECSSSCCEESC--------------------CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred ecccCcccCccccccC--------------------CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 7643210000000000 000011111111111 1112222222211 0 00 11123
Q ss_pred CceEEEEEcCCCc-EEEE-ECCCeEEEEcC-CCCeeeEeec----CCccEEEE-EEcCC-EEEEEe-eCCeEEEEeCC--
Q 003217 420 RRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQY----LPFAVQCL-CTFGS-QIWVGY-MNGIVQVLDLE-- 487 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sg-s~DgtIrlWD~-~g~~l~tl~~----H~~~V~sl-s~dG~-~LasGs-~DgtIrlWD~~-- 487 (838)
..+..++|+|||+ ++++ ..+++|++||. +|+++.++.. |......+ .+++. .++++. .|++|.|||+.
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 3455789999998 5544 46889999999 7899888874 66544444 45544 555554 58999999975
Q ss_pred ------CcccccccccccCEEEEE--eCCCEEEEEc-------CCCCeeeeecCCCCCC
Q 003217 488 ------GNLLGGWVAHSSPVIKMA--VGAGYIFTLA-------NHGGIRGWNVTSPGPL 531 (838)
Q Consensus 488 ------g~~i~~l~gH~~~V~sla--~dg~~l~S~S-------~DgtIrlWdl~s~~~~ 531 (838)
+++++++.+|.+.+..|+ +++++|++++ .+++|++||+.+....
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 468899999998887777 5788999887 3789999999887654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.80 E-value=1.9e-17 Score=194.00 Aligned_cols=308 Identities=11% Similarity=0.036 Sum_probs=193.1
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM- 220 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~- 220 (838)
.+++ +.|++|++||..+...... +.....+.+++|+|||++|++++.|++|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~---------------------i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEE---------------------EECSTTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEEEcCCCeEEEEECCCceEEEE---------------------EecCcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 5554 3578999999877543321 110123889999999999999999999999999
Q ss_pred -CCCccCCCCCcceeEEeccccccEEEEEEec----CCC-EEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 221 -NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 221 -~~g~~~~~~~~~~~~~l~gH~~~V~slafs~----dG~-L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
.++ +.+.++.. ...+.+|+|+| ||+ |++++ .+++|+|||..+.+....+....
T Consensus 209 ~~t~--------~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g----------- 268 (543)
T 1nir_A 209 AKEP--------TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG----------- 268 (543)
T ss_dssp SSSC--------EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE-----------
T ss_pred CCCC--------cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC-----------
Confidence 665 55666664 44679999999 998 67776 58999999997755432221100
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCccEEE--EEecCCceEEeeecccCcccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~~l~--~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
. ...+....+.+.+..+++++++..++ +.. +++|.+||+.+++.++ .+. .+.....
T Consensus 269 ------~-~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~------------ 328 (543)
T 1nir_A 269 ------M-TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD------------ 328 (543)
T ss_dssp ------E-CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC------------
T ss_pred ------c-ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC------------
Confidence 0 00000111233566677777665443 443 4689999998876544 222 1111111
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeec-CC-cEEEEec-cCcc--------ccCCCceEEEEEcCC-CcEE-EE
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-AD-AVRRVAA-KGGF--------GDDNRRTEALTTSID-GMIW-TG 436 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~-~v~~v~~-~g~~--------~~~~~~v~ala~S~d-g~l~-Sg 436 (838)
+.|.++++.++++. .+ .+..+.. .+.+ ..|..+...+ ++|+ |.++ ++
T Consensus 329 -------------------~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 329 -------------------GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp -------------------EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred -------------------ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence 12222222222221 11 1111111 1111 1133333333 4565 6654 55
Q ss_pred E-CCCeEEEEcC-C-------CCeeeEeecCCccEEEEE--EcCCEEEEEe-------eCCeEEEEeCC-Cccc-cc---
Q 003217 437 G-ANGLLLQWDP-N-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-------MNGIVQVLDLE-GNLL-GG--- 493 (838)
Q Consensus 437 s-~DgtIrlWD~-~-------g~~l~tl~~H~~~V~sls--~dG~~LasGs-------~DgtIrlWD~~-g~~i-~~--- 493 (838)
+ .|++|++||+ + +++++++.+|...+..+. ++|++||+++ .+++|.|||++ ++.. ..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 4 5899999999 5 789999999988877664 5899999987 37899999987 4443 33
Q ss_pred -----ccccccCEEEEEe--CCCEEEEE-----cCCCCeeeeecCCCCCCc
Q 003217 494 -----WVAHSSPVIKMAV--GAGYIFTL-----ANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 494 -----l~gH~~~V~sla~--dg~~l~S~-----S~DgtIrlWdl~s~~~~d 532 (838)
+..|...|..+++ +|+.++.+ +.|++|.+||..+...+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 2456778888874 78887744 358999999988765543
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.78 E-value=2.7e-17 Score=185.89 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=160.4
Q ss_pred CCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC---cEEEEECCCc
Q 003217 203 SGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAI 272 (838)
Q Consensus 203 g~~LaSGs~D------GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~~~ 272 (838)
++.|+.++.+ ++|++||++++ ....+.+|.+.|.+++|||||+ |++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY---------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC---------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC---------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5666666654 79999999863 4567889999999999999998 78888875 9999999775
Q ss_pred ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-C--CcEEEEeccCccEEEEE
Q 003217 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVF 348 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~--~tI~lWD~~tg~~l~~l 348 (838)
+.. .+.. + ...+..+++++++.+|+ +++ + ..|++||+.++++ ..+
T Consensus 214 ~~~-~l~~-------------------~----------~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l 262 (415)
T 2hqs_A 214 AVR-QVAS-------------------F----------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV 262 (415)
T ss_dssp CEE-EEEC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC
T ss_pred cEE-Eeec-------------------C----------CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC
Confidence 432 1110 1 23466778888888666 544 2 3599999999887 444
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC-C---cEEEEec-cC---ccccCCC
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-D---AVRRVAA-KG---GFGDDNR 420 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~---~v~~v~~-~g---~~~~~~~ 420 (838)
..+......+.++++. ..++.++. + .++.+.. .+ .+..+..
T Consensus 263 ~~~~~~~~~~~~spdg-------------------------------~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~ 311 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDS-------------------------------QNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 311 (415)
T ss_dssp CCCSSCEEEEEECTTS-------------------------------SEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred cCCCCcccceEECCCC-------------------------------CEEEEEECCCCCcEEEEEECCCCCEEEEecCCC
Confidence 4444333334443322 21111111 1 1222222 11 1223445
Q ss_pred ceEEEEEcCCCc-EEEEECC---CeEEEEcCC-CCeeeEeecCCccEEEEE--EcCCEEEEEeeCC---eEEEEeCCCcc
Q 003217 421 RTEALTTSIDGM-IWTGGAN---GLLLQWDPN-GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG---IVQVLDLEGNL 490 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~D---gtIrlWD~~-g~~l~tl~~H~~~V~sls--~dG~~LasGs~Dg---tIrlWD~~g~~ 490 (838)
.+.+++++|||+ |++++.+ ..|++||+. +++ ..+..|. .+.+++ ++|++|++++.++ .|++||++|+.
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 677899999998 6666653 589999994 555 5566664 677665 4799999988877 89999999988
Q ss_pred cccccccccCEEEEEeCCC
Q 003217 491 LGGWVAHSSPVIKMAVGAG 509 (838)
Q Consensus 491 i~~l~gH~~~V~sla~dg~ 509 (838)
...+.+|.+.|.++++.+.
T Consensus 390 ~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 390 KARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEECCCSSSEEEEEEECCC
T ss_pred EEEeeCCCCCCcCCccccc
Confidence 9999999999999998764
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.75 E-value=7e-16 Score=194.39 Aligned_cols=362 Identities=9% Similarity=-0.058 Sum_probs=216.6
Q ss_pred ceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 133 CFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
..++..+.+++.|....++.|++||+...... .+. .+ ...|.+++|||||++||+++.+
T Consensus 15 ~~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~------------------~lt--~~-~~~v~~~~~SPDG~~la~~s~~ 73 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR------------------KIV--SN-LGVINNARFFPDGRKIAIRVMR 73 (1045)
T ss_dssp CCCEEEEEETTEEEEEETTEEEEEETTTCCEE------------------EEE--CS-SSEEEEEEECTTSSEEEEEEEE
T ss_pred ceEeCcEEeCCEEEEEECCcEEEEECCCCcEE------------------Eee--eC-CCcccCeEECCCCCEEEEEEee
Confidence 35556665677666666689999998653321 111 22 6789999999999999988754
Q ss_pred ----C--cEEEEECCCCccCCCCCcceeEEeccccccE-------EEEEEecCCC-EEEeeCC----C--cEEEEECCCc
Q 003217 213 ----G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LWSGSEG----G--GIKIWPWEAI 272 (838)
Q Consensus 213 ----G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V-------~slafs~dG~-L~SgS~D----g--tIrvWd~~~~ 272 (838)
+ .|.+|++.++ ....+.+|...| .+++|||||+ +++++.| + .|.+|++.++
T Consensus 74 ~~~~~~~~i~~~d~~~g---------~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g 144 (1045)
T 1k32_A 74 GSSLNTADLYFYNGENG---------EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 144 (1045)
T ss_dssp STTCCEEEEEEEETTTT---------EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred ccCCCCCeEEEEECCCC---------CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC
Confidence 3 7999999885 366788999998 9999999999 4677755 3 5777777654
Q ss_pred ceeeecCCCceeeeEEE----Ee-e---ceeecccc--eecccee-----------eeecCCeEEEEEcCCCCEEEEeC-
Q 003217 273 EKALSLKPEERHTAALI----VE-R---SYIDLRSH--LSVNGFS-----------SILTSDIKNLLSDHSRAKVWSAG- 330 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~----~~-~---s~~~l~~~--~~~~~~~-----------~~~s~~v~~las~~~~~~V~s~s- 330 (838)
+.. .+........+++ .. . .....+.+ .....+. .-....+.++..+++ ..+++++
T Consensus 145 ~~~-~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~ 222 (1045)
T 1k32_A 145 NFV-PLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDI 222 (1045)
T ss_dssp EEE-ECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECT
T ss_pred CeE-EecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEec
Confidence 321 1211111111110 00 0 00000000 0000000 001234455555544 3444444
Q ss_pred CCcEEEEeccC-ccEEEEEecCCceEEeeecccCccccc-ccceeeEEEec-------CCC------------Ccceeee
Q 003217 331 FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAM-EDEFKTKIVTS-------SKK------------DKAQSSF 389 (838)
Q Consensus 331 ~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~s~-------~~~------------~~~~~s~ 389 (838)
+++++||++.. +...+.+..+... ..+.++++....+ ..+..++++.. ... ......+
T Consensus 223 dg~~~l~~~~~~g~~~~~l~~~~~~-~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~ 301 (1045)
T 1k32_A 223 DGFGQIYSTDLDGKDLRKHTSFTDY-YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAE 301 (1045)
T ss_dssp TSSCEEEEEETTSCSCEECCCCCSS-CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEE
T ss_pred cCceEEEEEeCCCCcceEecCCCCc-ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccccccccccee
Confidence 46788887653 3233444433321 1223333322111 00111112211 000 0123467
Q ss_pred eEe-ecCcceeeecCCcEEEEecc-C---ccccCCC-ceEEEEEcCCCc-EEEEECCCeEE-EEcCCCCeeeEeecCCcc
Q 003217 390 GFF-QRSRNAIMGAADAVRRVAAK-G---GFGDDNR-RTEALTTSIDGM-IWTGGANGLLL-QWDPNGNRLQDFQYLPFA 461 (838)
Q Consensus 390 ~~~-~~~~~~~~g~~~~v~~v~~~-g---~~~~~~~-~v~ala~S~dg~-l~Sgs~DgtIr-lWD~~g~~l~tl~~H~~~ 461 (838)
.++ +++..++.+....++.+... + .+..+.. .+..++++ ||. +++++.++.+. +||+.+.....+.+|...
T Consensus 302 ~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~ 380 (1045)
T 1k32_A 302 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN 380 (1045)
T ss_dssp EEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred eecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc
Confidence 788 88776666554444444332 2 1233445 78889999 886 78888888888 899965555566688888
Q ss_pred EEEEE--EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCC----------CeeeeecC
Q 003217 462 VQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG----------GIRGWNVT 526 (838)
Q Consensus 462 V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~Dg----------tIrlWdl~ 526 (838)
+.+++ +||++|++++.++.|++||++ +++...+.+|...|.+++ +||+++++++.++ +|++||+.
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 88775 479999999999999999997 566666668998888876 5889998887654 89999987
Q ss_pred CC
Q 003217 527 SP 528 (838)
Q Consensus 527 s~ 528 (838)
..
T Consensus 461 ~g 462 (1045)
T 1k32_A 461 GR 462 (1045)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.72 E-value=9.1e-16 Score=165.77 Aligned_cols=264 Identities=9% Similarity=0.028 Sum_probs=169.7
Q ss_pred cCCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 003217 141 TEEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMC 217 (838)
Q Consensus 141 ~~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~-DGtIrv 217 (838)
+.+.+|+ +.++.|++||+++...... + ..+ ..++ +++++|+|+.|+.++. ++.|.+
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~ 66 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQ-----------------I--TLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQ 66 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEE-----------------E--ECC-CCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeee-----------------E--Ecc-CCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence 3456665 4578999999976543211 1 112 3455 9999999997777665 899999
Q ss_pred EECCCCccCCCCCcce-eEEeccccccEEEEEEecCCC-EEEeeCCC---cEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 218 WKMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~-~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
||+.++ +. ...+..|..++.+++|+|||+ |+++..++ +|++||+.+++....+..
T Consensus 67 ~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------ 126 (331)
T 3u4y_A 67 IETQLE--------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI------------ 126 (331)
T ss_dssp EECSSS--------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC------------
T ss_pred EECCCC--------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC------------
Confidence 999987 34 556677777777799999998 66555553 899999976542211100
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCc-EEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~t-I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
......+++++++..++.+. +.. |.+|++.....+.... .
T Consensus 127 ------------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~----------------- 169 (331)
T 3u4y_A 127 ------------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--Q----------------- 169 (331)
T ss_dssp ------------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--E-----------------
T ss_pred ------------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--C-----------------
Confidence 12345677788777555443 366 9999987532211100 0
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP 447 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~ 447 (838)
+ .. .....+..++++|||+ ++.++ .+++|++||+
T Consensus 170 ---~--~~---------------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 170 ---E--FI---------------------------------------SGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp ---E--EE---------------------------------------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred ---c--cc---------------------------------------cCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 0 00 0011235678999997 65544 6889999999
Q ss_pred -CCCe---eeEeecCCccEEEE--EEcCCEEEEEe-eCCeEEEEeCC-Ccc--ccccccc----ccCE-----EEEEeCC
Q 003217 448 -NGNR---LQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNL--LGGWVAH----SSPV-----IKMAVGA 508 (838)
Q Consensus 448 -~g~~---l~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~-g~~--i~~l~gH----~~~V-----~sla~dg 508 (838)
+++. +.++..+ ..+..+ ++||++|++++ .++.|.+||++ +++ +..+..+ ...+ .++.+|+
T Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 206 QNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE 284 (331)
T ss_dssp SSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS
T ss_pred CCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC
Confidence 6777 7777654 344444 55799887766 47899999987 554 3322222 2211 2445688
Q ss_pred CEEE-EEcCCCCeeeeecCC
Q 003217 509 GYIF-TLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~-S~S~DgtIrlWdl~s 527 (838)
++++ +.+.+++|++||+..
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISG 304 (331)
T ss_dssp SEEEEEETTTTEEEEEETTS
T ss_pred CEEEEecCCCCcEEEEEecC
Confidence 8876 555677999999865
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.70 E-value=1.7e-15 Score=182.93 Aligned_cols=291 Identities=9% Similarity=-0.031 Sum_probs=179.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCccCCCCCcceeEEecccc-----------------------
Q 003217 191 VSSVMCMVGDEASGVVWSGHR-DG-----RIMCWKMNARLLDSDDGFGEVLSWQAHR----------------------- 241 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~-DG-----tIrvWd~~~g~~~~~~~~~~~~~l~gH~----------------------- 241 (838)
...|.+++|+|||++|++++. || +|++||+.++ +....+..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--------QTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--------CEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--------ceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 447999999999999999998 88 9999999987 3444444443
Q ss_pred -ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc--eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEE
Q 003217 242 -GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (838)
Q Consensus 242 -~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~l 317 (838)
..|.+++|||||+ |++++. ++|++||+.++. ....+.. + ...+..+
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-------------------~----------~~~~~~~ 157 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-------------------G----------EGFATDA 157 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-------------------S----------SSCEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-------------------C----------Ccccccc
Confidence 3388999999998 677776 999999997651 1111111 1 2346678
Q ss_pred EEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCc-e---------------EEeeecccCcccccccc-----eeeEE
Q 003217 318 LSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQ-I---------------ENRVDMSLLPDFAMEDE-----FKTKI 376 (838)
Q Consensus 318 as~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~-~---------------~~~~~~s~~~~~~~~~~-----~~~~~ 376 (838)
++++++..|+.++++.|.+||+.+++.......+.. + ...+.++++....+... .....
T Consensus 158 ~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 158 KLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred cCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 888999988888888999999999887654433221 1 01223333322211000 00000
Q ss_pred EecCCCC-cceeeeeEeecCcceeeecCC---cEEEEec-c-Cccc------cCCCceEEEEEcCCCc-EEEEEC-----
Q 003217 377 VTSSKKD-KAQSSFGFFQRSRNAIMGAAD---AVRRVAA-K-GGFG------DDNRRTEALTTSIDGM-IWTGGA----- 438 (838)
Q Consensus 377 ~s~~~~~-~~~~s~~~~~~~~~~~~g~~~---~v~~v~~-~-g~~~------~~~~~v~ala~S~dg~-l~Sgs~----- 438 (838)
....... .....+.+.. .|... .++.+.. . +... .+...+..+++ |||+ |++++.
T Consensus 238 ~~~~~p~~~~~~~~~~~~------~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPA------AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp EEEECSSCEEEEEEECCB------TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred cCCCCCCcccceEeecCC------CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 0000000 0000000000 01111 1111111 1 2111 24456788999 9998 665543
Q ss_pred CCeEEEEcC-CCCeeeEeecCCc----cEE--EEEEcCCEEEEEeeCCeEEEEe--CCCcccccccccccCEEEE---Ee
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPF----AVQ--CLCTFGSQIWVGYMNGIVQVLD--LEGNLLGGWVAHSSPVIKM---AV 506 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~----~V~--sls~dG~~LasGs~DgtIrlWD--~~g~~i~~l~gH~~~V~sl---a~ 506 (838)
+..|++||+ +|++...+..|.. .+. .+++||+.+++++.||+++||. ++++ ...+..|...|.++ .+
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence 568999999 6888777766543 223 3456899999999999777776 4567 88888998888765 35
Q ss_pred CCCEEE-EEcCCC--CeeeeecCC
Q 003217 507 GAGYIF-TLANHG--GIRGWNVTS 527 (838)
Q Consensus 507 dg~~l~-S~S~Dg--tIrlWdl~s 527 (838)
|++.++ +++.|+ ++++|++..
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCEEEEEEeCCCCceEEEEEEEc
Confidence 787765 566666 899999864
No 138
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.70 E-value=8e-16 Score=173.85 Aligned_cols=264 Identities=9% Similarity=-0.028 Sum_probs=175.6
Q ss_pred CeEEEEEcCCC-CEEEEEe----CCC----cEEEEEC--CCCccCCCCCccee--EEeccccccEEEEEEec--------
Q 003217 193 SVMCMVGDEAS-GVVWSGH----RDG----RIMCWKM--NARLLDSDDGFGEV--LSWQAHRGPVLSLCISS-------- 251 (838)
Q Consensus 193 ~V~~la~s~dg-~~LaSGs----~DG----tIrvWd~--~~g~~~~~~~~~~~--~~l~gH~~~V~slafs~-------- 251 (838)
.|....|++.| ..+++|+ .|| +|++||+ .++ +++ ..+.+|...|..+++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG--------TVLAQNSYKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT--------CEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC--------CEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence 45666777766 5676887 568 9999999 876 444 45889999998888875
Q ss_pred -------CCCEEEeeCC------CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 252 -------YGDLWSGSEG------GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 252 -------dG~L~SgS~D------gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
+++++.++.+ ++|++||+++.. ...+. ++ ...+.+++
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~-------------------~~----------~~~v~~~~ 185 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH-------------------RS----------PQPLMSPA 185 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-------------------EE----------SSCEEEEE
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-------------------CC----------CCcceeeE
Confidence 4457665554 799999996422 11110 01 34577888
Q ss_pred EcCCCCEEEEeCC----CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 319 SDHSRAKVWSAGF----LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 319 s~~~~~~V~s~s~----~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
.++++..|+.++. .+|++||+.++++.. +..+......+.++++....
T Consensus 186 ~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~l--------------------------- 237 (415)
T 2hqs_A 186 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL--------------------------- 237 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEE---------------------------
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEE---------------------------
Confidence 8888888887764 289999999998854 43333333334444332211
Q ss_pred CcceeeecCCc---EEEEec-cC---ccccCCCceEEEEEcCCCc-EEEEEC-CC--eEEEEcCCCCeeeEeecCCccEE
Q 003217 395 SRNAIMGAADA---VRRVAA-KG---GFGDDNRRTEALTTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ 463 (838)
Q Consensus 395 ~~~~~~g~~~~---v~~v~~-~g---~~~~~~~~v~ala~S~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~tl~~H~~~V~ 463 (838)
++++..++ ++.+.. .+ .+..+...+.+++|+|||+ |++++. ++ .|.+||+.+.....+..|...+.
T Consensus 238 ---a~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~ 314 (415)
T 2hqs_A 238 ---AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ 314 (415)
T ss_dssp ---EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE
T ss_pred ---EEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCccc
Confidence 11222111 222221 11 2344556788999999998 777775 44 67888985444556667777887
Q ss_pred EEE--EcCCEEEEEeeC---CeEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCCC---CeeeeecC
Q 003217 464 CLC--TFGSQIWVGYMN---GIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG---GIRGWNVT 526 (838)
Q Consensus 464 sls--~dG~~LasGs~D---gtIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~Dg---tIrlWdl~ 526 (838)
+++ +||++|++++.+ ..|++||+++.....+..|. .+.+++ +||++|++++.|+ .|++||+.
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 765 589999988874 68999999854445666665 777776 4788999888877 68999975
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=1.8e-15 Score=158.70 Aligned_cols=243 Identities=10% Similarity=0.017 Sum_probs=166.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA-RLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~-g~~~ 226 (838)
+.|+.|++||+.+..... +. .+ ...|.+++|+|+|++|++++ ++.|++||+.+ +
T Consensus 19 ~~~~~i~~~d~~~~~~~~------------------~~--~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--- 73 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRV------------------VW--QT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--- 73 (297)
T ss_dssp CCCEEEEEEETTTTEEEE------------------EE--EE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---
T ss_pred CcceeEEEEeCCCCceee------------------ec--cC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---
Confidence 357899999987643211 11 12 66899999999999999987 78999999988 6
Q ss_pred CCCCcceeEEeccc-cccEEEEEEecCCC-EEEee--CCCcEEEEECCCcce-eeecCCCceeeeEEEEeeceeecccce
Q 003217 227 SDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHL 301 (838)
Q Consensus 227 ~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~ 301 (838)
+......+| ...|.+++|+|||+ |++++ .++.++||.++.... ...+..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------- 127 (297)
T 2ojh_A 74 -----SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK--------------------- 127 (297)
T ss_dssp -----SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS---------------------
T ss_pred -----CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec---------------------
Confidence 444455566 47899999999998 67777 456777777643111 111100
Q ss_pred eccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEecc--CccEEEEEecCCceEEeeecccCcccccccceeeEEE
Q 003217 302 SVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (838)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (838)
...+..++.++++..++ ++. ++.++||++. +++. ..
T Consensus 128 ---------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~------------------------------ 167 (297)
T 2ojh_A 128 ---------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR------------------------------ 167 (297)
T ss_dssp ---------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE------------------------------
T ss_pred ---------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE------------------------------
Confidence 11245566777777665 443 5677888753 2221 00
Q ss_pred ecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC--CCCeee
Q 003217 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP--NGNRLQ 453 (838)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~--~g~~l~ 453 (838)
+..+...+..++++|+|. ++.++ .|+.+++|++ .+..+.
T Consensus 168 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 168 -------------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp -------------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred -------------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 011122345678899987 56555 5889999987 567788
Q ss_pred EeecCCccEEEEEE--cCCEEEEEeeC-----------CeEEEEeCCC-cc--cccccccccCEEEEE--eCCCEEEEEc
Q 003217 454 DFQYLPFAVQCLCT--FGSQIWVGYMN-----------GIVQVLDLEG-NL--LGGWVAHSSPVIKMA--VGAGYIFTLA 515 (838)
Q Consensus 454 tl~~H~~~V~sls~--dG~~LasGs~D-----------gtIrlWD~~g-~~--i~~l~gH~~~V~sla--~dg~~l~S~S 515 (838)
.+..|...+.++++ +|++|++++.+ +.|.+||+++ +. +..+.+|...|.+++ +++++|++++
T Consensus 211 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 88888888887754 78999888875 5799999974 43 445558888888776 4788888877
Q ss_pred CCC
Q 003217 516 NHG 518 (838)
Q Consensus 516 ~Dg 518 (838)
.|.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 664
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.68 E-value=3.7e-14 Score=153.89 Aligned_cols=257 Identities=9% Similarity=0.061 Sum_probs=169.6
Q ss_pred ecCCEEEEec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EEe
Q 003217 140 CTEEQLWAGG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGH 210 (838)
Q Consensus 140 ~~~~~l~~g~--------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SGs 210 (838)
.+++.+|++. ++.|.+||..+...... + . . ...+.+++++|+|+.++ ++.
T Consensus 50 ~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----------------~-~-~--~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 50 QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-----------------I-H-N--DLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-----------------E-E-E--SSCCCSEEEETTTTEEEEEET
T ss_pred CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-----------------E-e-c--CCCcceEEECCCCCEEEEEec
Confidence 3456888754 66899999876543221 1 1 1 23467789999999555 455
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccc---------cEEEEEEecCCC-EEEee--CCCcEEEEECCCcceeeec
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---------PVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---------~V~slafs~dG~-L~SgS--~DgtIrvWd~~~~~~~~~~ 278 (838)
.++.|.+||..++ +....+..|.. .+.+++|+|+|+ |+.++ .++.|.+||..+++....+
T Consensus 109 ~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 109 VNSAVTAIDAKTG--------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TTTEEEEEETTTC--------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCC--------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 6799999999987 44555554432 278999999998 65544 5889999999765432221
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
... ......++.++++..++.+. ++.|.+||+.+++.+..+.....
T Consensus 181 ~~~-----------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 227 (353)
T 3vgz_A 181 QNT-----------------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD---- 227 (353)
T ss_dssp CCC-----------------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----
T ss_pred cCC-----------------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----
Confidence 100 11133455667777776665 56899999999887655432100
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.+...+..++++|||. ++.+
T Consensus 228 -----------------------------------------------------------~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 228 -----------------------------------------------------------GKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp -----------------------------------------------------------SSCCCEEEEEEETTTTEEEEE
T ss_pred -----------------------------------------------------------CCCcccceEEECCCCCEEEEE
Confidence 0112234577888887 6655
Q ss_pred EC-CCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEe-eCCeEEEEeCC-CcccccccccccCEEEEEe--CCCE
Q 003217 437 GA-NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGY 510 (838)
Q Consensus 437 s~-DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~ 510 (838)
+. ++.|.+||. +++.+..+..+...-.+++++|++++++. .+++|.+||++ ++.+..+..+. .+.++++ ||++
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKT 327 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCE
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCE
Confidence 54 589999999 78888887754443335567899777766 58999999987 66666665543 5677764 7787
Q ss_pred EEEEcCCC
Q 003217 511 IFTLANHG 518 (838)
Q Consensus 511 l~S~S~Dg 518 (838)
++.+..++
T Consensus 328 l~v~~~~~ 335 (353)
T 3vgz_A 328 LYVSVKQK 335 (353)
T ss_dssp EEEEEECC
T ss_pred EEEEEccc
Confidence 76655554
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.67 E-value=8.9e-15 Score=157.71 Aligned_cols=268 Identities=12% Similarity=0.167 Sum_probs=164.5
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD-GRIMCWKM 220 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D-GtIrvWd~ 220 (838)
.+|+ +.|+.|++||+....... .... ..+...+.+++|+|+|++|++++.+ +.|++|++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALT-----------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEE-----------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEE-----------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 3454 358999999985311000 0111 1115578899999999999999887 99999999
Q ss_pred C--CCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEe-eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 221 N--ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 221 ~--~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg-S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
. ++. .+....+..+. .+.+++|+|+|+ |+++ ..++.|++||+..+. .... ...
T Consensus 68 ~~~~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~------~~~--------- 124 (343)
T 1ri6_A 68 APDDGA------LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGV------VDV--------- 124 (343)
T ss_dssp CTTTCC------EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEE------EEE---------
T ss_pred cCCCCc------eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-cccc------ccc---------
Confidence 7 431 12333444444 788999999998 6554 458999999984211 0000 000
Q ss_pred cccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccC-ccEEEEEecCCceEEeeecccCccccccccee
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
+.. ...+..+++++++..+++++ ++.|++||+.+ +++...... .
T Consensus 125 ~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~-------------------- 171 (343)
T 1ri6_A 125 VEG-----------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA--E-------------------- 171 (343)
T ss_dssp ECC-----------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--E--------------------
T ss_pred ccC-----------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc--c--------------------
Confidence 000 12344566777777666654 57899999987 554221100 0
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcCC---
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDPN--- 448 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~~--- 448 (838)
... .....+..++++|+|. +++++ .++.|++||+.
T Consensus 172 ---~~~-------------------------------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 172 ---VTT-------------------------------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ---EEC-------------------------------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ---ccc-------------------------------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 000 0011234678899997 65554 78999999983
Q ss_pred CCe--eeEee----cC--CccEEEEE--EcCCEEEEEe-eCCeEEEEeCC--C---cccccccccccCEEEEE--eCCCE
Q 003217 449 GNR--LQDFQ----YL--PFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE--G---NLLGGWVAHSSPVIKMA--VGAGY 510 (838)
Q Consensus 449 g~~--l~tl~----~H--~~~V~sls--~dG~~LasGs-~DgtIrlWD~~--g---~~i~~l~gH~~~V~sla--~dg~~ 510 (838)
|+. ++.+. ++ ...+.+++ ++|++|+++. .++.|++||+. + +.+..+..+.. +.+++ +++++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~ 290 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKY 290 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCE
Confidence 332 23332 11 23454554 4688887544 79999999986 2 23444544444 66666 47888
Q ss_pred EEEEc-CCCCeeeeecC
Q 003217 511 IFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 511 l~S~S-~DgtIrlWdl~ 526 (838)
++.++ .|+.|++|++.
T Consensus 291 l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTTCEEEEEEEE
T ss_pred EEEecCCCCeEEEEEEc
Confidence 88776 68999999764
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.67 E-value=1.8e-15 Score=182.09 Aligned_cols=315 Identities=9% Similarity=-0.011 Sum_probs=175.4
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCC---CCeEEEEEcCCCCEEEEEeCC------
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGV---SSVMCMVGDEASGVVWSGHRD------ 212 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~---~~V~~la~s~dg~~LaSGs~D------ 212 (838)
+..++.+.|++|++||+++...... + . .+ . ..|.+++|||||++|++++.|
T Consensus 28 g~~~~~~~dg~i~~~d~~~g~~~~~-----------------~-~-~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETNTSTVL-----------------I-E-GK-KIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEE-----------------E-C-TT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred CcEEEEeCCCCEEEEECCCCcEEEE-----------------e-c-cc-cccccccceEEECCCCCEEEEEecCccceee
Confidence 3444446788999999976543211 0 0 11 2 248999999999999999875
Q ss_pred ---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 213 ---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 213 ---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.|.+||+.++. .+.+....+|...|.+++|||||+ |++++. +.|++||+.+++.............
T Consensus 88 ~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~-- 158 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGD------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI-- 158 (723)
T ss_dssp CCCSEEEEEESSSCC------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE--
T ss_pred cceeeEEEEECCCCc------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce--
Confidence 678899999862 011222345666799999999997 777776 7999999987543211111000000
Q ss_pred EEeeceeecccceeccceee-e----ecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 289 IVERSYIDLRSHLSVNGFSS-I----LTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~-~----~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
.+++.. + ....+..++.++++..|+.++. ..+.+|++..... ..... ...+.++
T Consensus 159 --------------~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~ 219 (723)
T 1xfd_A 159 --------------YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYPT-VKPYHYP 219 (723)
T ss_dssp --------------EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSCC-CEEEECC
T ss_pred --------------ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCCc-ceeccCC
Confidence 000000 0 0012356778888888877653 3577777642110 00000 0111111
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEE-EEEC--
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-TGGA-- 438 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~-Sgs~-- 438 (838)
..... .....++++...... ....+.....+..+...+..+++||||+++ +.+.
T Consensus 220 ~~G~~--~~~~~l~~~d~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 220 KAGSE--NPSISLHVIGLNGPT---------------------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp BTTSC--CCEEEEEEEESSSSC---------------------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred CCCCC--CCeeEEEEEECCCCc---------------------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence 11110 001111111111000 001110000112234567789999999854 4432
Q ss_pred --CCeEEEEcC-CCCeeeEeec-CCccEE------EEEEcCCEEEEE--eeCC------eEEEEe-CCCcc---cccccc
Q 003217 439 --NGLLLQWDP-NGNRLQDFQY-LPFAVQ------CLCTFGSQIWVG--YMNG------IVQVLD-LEGNL---LGGWVA 496 (838)
Q Consensus 439 --DgtIrlWD~-~g~~l~tl~~-H~~~V~------sls~dG~~LasG--s~Dg------tIrlWD-~~g~~---i~~l~g 496 (838)
+..|++||+ +|++...+.. |..++. .+++||++|+.. ..++ .|.+|| ..+.. ...+..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 357999999 6787766654 334332 346689977654 4566 577888 45544 666765
Q ss_pred cccCEEE---EEeCCCEEEEEcCC---CCeeeeecCC
Q 003217 497 HSSPVIK---MAVGAGYIFTLANH---GGIRGWNVTS 527 (838)
Q Consensus 497 H~~~V~s---la~dg~~l~S~S~D---gtIrlWdl~s 527 (838)
+...+.. +.+||+.|+..+.+ +++++|++..
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 4455543 34689988765554 8899999864
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.65 E-value=1.6e-14 Score=173.46 Aligned_cols=274 Identities=10% Similarity=0.037 Sum_probs=176.7
Q ss_pred eEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~-~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+..++.+. +.+..+.++.|++||+.+..... + ..+...+.+++|+|||+.|+++ .|+
T Consensus 84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~------------------l---~~~~~~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKVTY------------------L---FDTNEETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEETTTTEEEE------------------E---ECCTTCCTTCEECTTSSEEEEE-ETT
T ss_pred ceeEEECCCCeEEEEECCEEEEEECCCCceEE------------------c---cCCcccccCCcCCCCCCEEEEE-ECC
Confidence 44555543 46666778999999997643211 1 1114467789999999999995 789
Q ss_pred cEEEEECCC-----CccCCCCCcceeEEecccccc--------------EEEEEEecCCC-EEEee--------------
Q 003217 214 RIMCWKMNA-----RLLDSDDGFGEVLSWQAHRGP--------------VLSLCISSYGD-LWSGS-------------- 259 (838)
Q Consensus 214 tIrvWd~~~-----g~~~~~~~~~~~~~l~gH~~~--------------V~slafs~dG~-L~SgS-------------- 259 (838)
.|++|++.+ + +.......+... +.+++|||||+ |++++
T Consensus 142 ~i~v~~~~~~~~~~g--------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 142 NLYIARGGKLGEGMS--------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEEEECBCTTSCCC--------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred eEEEEecCcccccCC--------CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 999999987 6 333333333333 48999999998 77776
Q ss_pred -------------------CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 260 -------------------EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 260 -------------------~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
.+..|++||+++++........ .+ ...+..++.+
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~----------~~~~~~~~~s 266 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------------PK----------EKFLTNLSWS 266 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------------CT----------TCEEEEEEEC
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------------CC----------ceeEeeEEEE
Confidence 4467999998765421111000 00 1235667778
Q ss_pred CCCCEEEEeC-CC-----cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 321 HSRAKVWSAG-FL-----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 321 ~~~~~V~s~s-~~-----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
+++..|+.++ +. .|.+||+.+++.++.+.... .. .
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~--------------------------~~---~---------- 307 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET--------------------------DK---H---------- 307 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE--------------------------CS---S----------
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc--------------------------CC---C----------
Confidence 8887776643 32 79999999984333321100 00 0
Q ss_pred CcceeeecCCcEEEEeccCccccCCCceEEEEEcC--CCc-EEEEECCCeEEEEcC--CCCeeeEeecCCccEEE-E--E
Q 003217 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQC-L--C 466 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~--dg~-l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~s-l--s 466 (838)
. ...+..++++| ||+ +++++.|++++||+. +++.++.+..|...|.+ + +
T Consensus 308 --------------------~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~s 364 (706)
T 2z3z_A 308 --------------------Y---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFD 364 (706)
T ss_dssp --------------------C---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEEC
T ss_pred --------------------e---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEc
Confidence 0 00012356888 887 677778899999976 57888899888887865 4 4
Q ss_pred EcCCEEEEEee-CC----eEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcC-C---CCeeeeecCCC
Q 003217 467 TFGSQIWVGYM-NG----IVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLAN-H---GGIRGWNVTSP 528 (838)
Q Consensus 467 ~dG~~LasGs~-Dg----tIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~-D---gtIrlWdl~s~ 528 (838)
++|++|+.++. ++ .|..||+++.....+. |...+.+++ +||++++..+. + +.|.+||+...
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 57887776654 43 6777787654344443 677788876 47888775533 3 45999998654
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.65 E-value=1.6e-15 Score=178.38 Aligned_cols=224 Identities=9% Similarity=-0.036 Sum_probs=152.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEeeC---CCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSE---GGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~-DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~---DgtI 264 (838)
..+|++++|+|||++||+++. ||+++||+++++ ....+..|. ..|.+++|||| + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------CcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 568999999999999999887 999999999765 344555555 68999999999 7 456664 5667
Q ss_pred EEEECCC--cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC--EEEEeCCCcEEEEecc
Q 003217 265 KIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDAR 340 (838)
Q Consensus 265 rvWd~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~--~V~s~s~~tI~lWD~~ 340 (838)
+||.+.. ......+.... .....+.++++. .+++++.+.+.+||+.
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~------------------------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVK------------------------------PMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EEEEEETTSTTCCEECTTSC------------------------------SBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCccccccCCC------------------------------CceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 7876643 11111111100 111222333332 3344455566699998
Q ss_pred CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCC
Q 003217 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
++++......+ .
T Consensus 141 ~g~~~~l~~~~--------------------------------------------------------------------~ 152 (582)
T 3o4h_A 141 GGGLRELARLP--------------------------------------------------------------------G 152 (582)
T ss_dssp TTEEEEEEEES--------------------------------------------------------------------S
T ss_pred CCcEEEeecCC--------------------------------------------------------------------C
Confidence 88753322100 0
Q ss_pred ceEEEEEcCCCc-EEEEECC----CeEEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCC--eEEEEeCCC-cc
Q 003217 421 RTEALTTSIDGM-IWTGGAN----GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG--IVQVLDLEG-NL 490 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~D----gtIrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~Dg--tIrlWD~~g-~~ 490 (838)
.++++||||+ |++++.| ++|++||+++..++.+..|...+.+++ +||++|+++..++ .|++||+++ ++
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 2456788887 5656666 689999995434457788888888764 5899999877888 899999984 44
Q ss_pred cccccccccCEEE----------EEeCCCEEEEEcCCCCeeeeec
Q 003217 491 LGGWVAHSSPVIK----------MAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 491 i~~l~gH~~~V~s----------la~dg~~l~S~S~DgtIrlWdl 525 (838)
. .+.+|...|.+ ..+||..+++++.|+++++|++
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4 77777765543 3357878889999999999997
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.65 E-value=2.2e-14 Score=180.68 Aligned_cols=299 Identities=12% Similarity=-0.014 Sum_probs=186.6
Q ss_pred EEEEEcCCCCEEEEEeCC----C--cEEEEECCCCccCC--CCC------------------------------------
Q 003217 195 MCMVGDEASGVVWSGHRD----G--RIMCWKMNARLLDS--DDG------------------------------------ 230 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~D----G--tIrvWd~~~g~~~~--~~~------------------------------------ 230 (838)
.+++|+|||+++++++.| + .|.+|++.++.... ...
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 899999999999999866 3 57777776652100 000
Q ss_pred ---cceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 231 ---FGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 231 ---~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
-.....+.+|.+.|.+++|+++ . +++++.|++++||.+.... ....+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-------------------~----- 244 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS-------------------F----- 244 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC-------------------C-----
T ss_pred ECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC-------------------C-----
Confidence 0112334678888999999987 5 4677888999999864311 1111110 1
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCC-----------ceEEeeecc-cCcccccc-cce
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG-----------QIENRVDMS-LLPDFAME-DEF 372 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~-----------~~~~~~~~s-~~~~~~~~-~~~ 372 (838)
..+...++++++..|+.+.++.|.+||+.++++. .+..+. .....+.++ ++....+. ...
T Consensus 245 ------~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~ 317 (1045)
T 1k32_A 245 ------TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG 317 (1045)
T ss_dssp ------CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT
T ss_pred ------CCcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcC
Confidence 1122335556777777777889999999665543 554321 011233444 43221110 001
Q ss_pred eeEEEecCC--------CCc-ceeeeeEeecCcceeeecCCc-EE-EEecc-C---ccccCCCceEEEEEcCCCc-EEEE
Q 003217 373 KTKIVTSSK--------KDK-AQSSFGFFQRSRNAIMGAADA-VR-RVAAK-G---GFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 373 ~~~~~s~~~--------~~~-~~~s~~~~~~~~~~~~g~~~~-v~-~v~~~-g---~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.++++.... ... ....+.|+ ++..++....+. ++ .+... + .+..+...+..+++||||+ |+++
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEE
Confidence 111211110 011 22233444 443333333332 33 22221 1 2334556788999999998 7889
Q ss_pred ECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCC----------eEEEEeCCCcccccccccccCEEE
Q 003217 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG----------IVQVLDLEGNLLGGWVAHSSPVIK 503 (838)
Q Consensus 437 s~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~Dg----------tIrlWD~~g~~i~~l~gH~~~V~s 503 (838)
+.+++|++||+ +|++...+.+|...|.+++ +||++|++++.++ .|++||+++..+..+..|...+.+
T Consensus 397 ~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 476 (1045)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence 99999999999 6787777778888887664 5899998887654 999999985447788889888888
Q ss_pred EE--eCCCEEEEEcCCCCeeeeecC
Q 003217 504 MA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 504 la--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
++ +||++|++++.++..++|+..
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSS
T ss_pred ceEcCCCCEEEEEecccCCcCcchh
Confidence 76 488999999999999988754
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.64 E-value=2.7e-14 Score=153.50 Aligned_cols=279 Identities=9% Similarity=0.034 Sum_probs=157.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS-SVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLL 225 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~-~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~ 225 (838)
+.++.|++||+.+...... + ...+.. .+.+++++|+|+.| ++++.++.|.+||+.++
T Consensus 8 ~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-- 66 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKV-----------------I--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-- 66 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE-----------------E--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--
T ss_pred CCCCeEEEEECCCCcEEEE-----------------E--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--
Confidence 5689999999976543211 0 011011 47789999999766 55667889999999886
Q ss_pred CCCCCcceeEEec-cc----cccEEEEEEecCCC-EEEee------------CCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 226 DSDDGFGEVLSWQ-AH----RGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 226 ~~~~~~~~~~~l~-gH----~~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
+....+. ++ ...+.+++|+|||+ |++++ .++.|++||+.+++....+..
T Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------- 133 (337)
T 1pby_B 67 ------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------- 133 (337)
T ss_dssp ------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------
T ss_pred ------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------
Confidence 3444443 22 23677899999997 66665 579999999976432211110
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
...+..++.++++..++.+ ++.|.+||+.+++++..+..+... ....+++.....
T Consensus 134 -----------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 134 -----------------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp -----------------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred -----------------------CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 1123345567777767766 578999999999987776543210 011122211111
Q ss_pred cccceeeEEEecCCCCccee-e--eeEeecCcceeeecCCcEEEEec-cC-----ccccCCCceEEEEEcCCCc-EEEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQS-S--FGFFQRSRNAIMGAADAVRRVAA-KG-----GFGDDNRRTEALTTSIDGM-IWTGG 437 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~-s--~~~~~~~~~~~~g~~~~v~~v~~-~g-----~~~~~~~~v~ala~S~dg~-l~Sgs 437 (838)
+ +... ...... . ......+..........+..+.. .+ .+..+...+..++++|||. ++++
T Consensus 189 ~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 189 W--------NQHE-SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp C--------CCCT-TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred e--------eecc-CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-
Confidence 0 0000 000000 0 00000000000000001111111 00 0112334566788999987 5555
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccccccccc
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (838)
++.|.+||+ +++.+..+..+ ..+.+++ ++|++|++++.++.|++||++ ++.+..+..+
T Consensus 259 -~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 259 -YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred -CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 688999999 57777776543 3345554 468888888889999999986 5666665544
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.63 E-value=5.9e-14 Score=152.28 Aligned_cols=241 Identities=15% Similarity=0.168 Sum_probs=163.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCC
Q 003217 192 SSVMCMVGDEASGVVWSGHR-------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG 262 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~-------DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg 262 (838)
..+..++++|+|+.|++++. +++|.+||..++ +....+.. ...+.+++|+|+|+ ++ ++..++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEec-CCCcceEEECCCCCEEEEEecCCC
Confidence 46789999999999999885 568999999886 44444443 34477899999998 54 666789
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEec
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDA 339 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~ 339 (838)
.|.+||..+++....+...... .... ........+++++++..++.+. +..|.+||+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~-----------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRK-----------------RTEE---VRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCC-----------------CCSS---CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EEEEEeCCCCeeEEEEecCCCc-----------------cccc---cCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 9999999775432222110000 0000 0001245677788888777665 457999999
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
.+++.+..+...+.
T Consensus 172 ~~~~~~~~~~~~~~------------------------------------------------------------------ 185 (353)
T 3vgz_A 172 GNIKLKTAIQNTGK------------------------------------------------------------------ 185 (353)
T ss_dssp TTTEEEEEECCCCT------------------------------------------------------------------
T ss_pred CCCceEEEecCCCC------------------------------------------------------------------
Confidence 99887655431110
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec----CCccEEEE--EEcCCEEEEEee-CCeEEEEeCC-Cc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE-GN 489 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~----H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g~ 489 (838)
.+..++++|||. +++++.++.|.+||. +++.+..+.. +...+.++ +++|++|++++. ++.|.+||++ ++
T Consensus 186 -~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 186 -MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp -TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred -ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 012345778876 788888999999999 6777777664 45556655 457888887775 5999999986 66
Q ss_pred ccccccccccCEEEEEeCCCEEE-EEcCCCCeeeeecCCC
Q 003217 490 LLGGWVAHSSPVIKMAVGAGYIF-TLANHGGIRGWNVTSP 528 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~-S~S~DgtIrlWdl~s~ 528 (838)
.+..+..+...-..+.+++++++ +...+++|.+||+.+.
T Consensus 265 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 265 ILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 66666554443344556888655 5557999999997653
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.62 E-value=2e-14 Score=173.49 Aligned_cols=278 Identities=9% Similarity=0.021 Sum_probs=160.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.|.+++|+|||++|++++. +.|++||+.++. . .....+..|...|.+++|||||+ |++++ ++.|++||+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~----~--~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEG----K--AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCS----T--TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCC----c--ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 4889999999999999987 999999998850 0 03456778889999999999998 67776 56999999977
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CC------------------
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL------------------ 332 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~------------------ 332 (838)
++.. .+........ . .+....+..-....+..++.++++..|+.++ +.
T Consensus 182 g~~~-~~~~~~~~~~-~-----------~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 182 GRQM-QLTADGSTTI-G-----------NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp TEEE-ECCCCCCSSE-E-----------ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred CCEE-EeccCCccce-e-----------ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 5432 1111100000 0 0000000000000123345555555554443 11
Q ss_pred ---------------cEEEEeccC-ccEEEEEec--CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 333 ---------------SFALWDART-RELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 333 ---------------tI~lWD~~t-g~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
.|.+||+.+ +++...... +......+.+ ++
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------pD 296 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--------------------------------RD 296 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--------------------------------EE
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--------------------------------CC
Confidence 677888888 776443321 1122222222 22
Q ss_pred Ccceeeec-----CCc-EEEEec-cCc----cccCC-C---ceEEEEEcCCCc-EEEEECCCeEEEEcC--CCCeeeEee
Q 003217 395 SRNAIMGA-----ADA-VRRVAA-KGG----FGDDN-R---RTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQ 456 (838)
Q Consensus 395 ~~~~~~g~-----~~~-v~~v~~-~g~----~~~~~-~---~v~ala~S~dg~-l~Sgs~DgtIrlWD~--~g~~l~tl~ 456 (838)
+..++... .+. ++.+.. .+. +..+. . .+..++|+|||+ +++++.|++++||.. +|+ ++.+.
T Consensus 297 g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 297 PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 22111110 011 111111 110 00111 1 234678999998 567778887777755 567 88888
Q ss_pred cCCccEEEE---EEcCCEEEEEe-eCC--eEEEEeCC--CcccccccccccCEEEEE--eCCCEEEEE-cCC---CCeee
Q 003217 457 YLPFAVQCL---CTFGSQIWVGY-MNG--IVQVLDLE--GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANH---GGIRG 522 (838)
Q Consensus 457 ~H~~~V~sl---s~dG~~LasGs-~Dg--tIrlWD~~--g~~i~~l~gH~~~V~sla--~dg~~l~S~-S~D---gtIrl 522 (838)
.|...|.++ +++|++|+..+ .++ +++||++. |+....+.. ...+.+++ +||++++.. +.. ..+.+
T Consensus 376 ~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l 454 (741)
T 2ecf_A 376 HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL 454 (741)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence 888888754 55888776544 455 89999864 666666665 56677776 478877643 332 35777
Q ss_pred eec
Q 003217 523 WNV 525 (838)
Q Consensus 523 Wdl 525 (838)
|+.
T Consensus 455 ~~~ 457 (741)
T 2ecf_A 455 FRA 457 (741)
T ss_dssp EET
T ss_pred EEc
Confidence 775
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.58 E-value=3.6e-13 Score=146.80 Aligned_cols=248 Identities=11% Similarity=0.103 Sum_probs=153.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (838)
...+..++|+|+|+ |++++. ++.|++|++.++. .+.+..+.+|...+..|+|+|||+ |++++ .+++|+
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 34567799999999 665554 6899999997752 123444566788899999999998 77766 789999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc-Ccc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~-tg~ 343 (838)
+|++........ ...+ ...+.+.. .......+..++.++++..+++.. ++.|.+||+. +++
T Consensus 112 v~~~~~~g~~~~-------~~~~-------~~~~~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 112 VMKIAADGALTL-------TDTV-------QHSGHGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEECTTSCEEE-------EEEE-------ECCCCCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred EEEeCCCCCeee-------ccee-------ecCCCCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 999853111000 0000 00000000 000022466788888877433333 4679999987 454
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
+..... ... .....+.
T Consensus 175 ~~~~~~---------------------------~~~-------------------------------------~~g~~p~ 190 (347)
T 3hfq_A 175 LSEQSV---------------------------LTM-------------------------------------EAGFGPR 190 (347)
T ss_dssp EEEEEE---------------------------EEC-------------------------------------CTTCCEE
T ss_pred EEEeee---------------------------EEc-------------------------------------CCCCCCc
Confidence 321100 000 0001234
Q ss_pred EEEEcCCCc-EEE-EECCCeEEEEcCC---CCe--eeEeecCC------ccEEEEE--EcCCEEEEEe-eCCeEEEEeCC
Q 003217 424 ALTTSIDGM-IWT-GGANGLLLQWDPN---GNR--LQDFQYLP------FAVQCLC--TFGSQIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 424 ala~S~dg~-l~S-gs~DgtIrlWD~~---g~~--l~tl~~H~------~~V~sls--~dG~~LasGs-~DgtIrlWD~~ 487 (838)
.++++|||+ +++ +..++.|++|++. |+. +..+.... ..+..++ +||++|+++. .+++|.+||+.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 578999998 655 4467899999983 432 33333222 3466554 5799886554 58999999986
Q ss_pred --C--cccccccccccCEEEEE--eCCCEEEEEcC-CCCeeeeecC
Q 003217 488 --G--NLLGGWVAHSSPVIKMA--VGAGYIFTLAN-HGGIRGWNVT 526 (838)
Q Consensus 488 --g--~~i~~l~gH~~~V~sla--~dg~~l~S~S~-DgtIrlWdl~ 526 (838)
| +.+..+..|...+.+++ +||++|+.++. +++|++|++.
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 3 34556666666677776 47888887765 5899999763
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.58 E-value=1.5e-13 Score=165.10 Aligned_cols=272 Identities=11% Similarity=0.014 Sum_probs=149.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
.+|.+++|+|| +.++.+ .|++|++||+.++ ....+..|.+.|.+++|||||+ |++ +.|+.|++|++.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---------KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---------EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---------ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 57999999999 555554 4699999999885 3445566778899999999998 566 478999999997
Q ss_pred C-----cceeeecCCCceeeeEEEEeeceeecccceecccee--eeecCCeEEEEEcCCCCEEEEeC-C-CcEEEEeccC
Q 003217 271 A-----IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG-F-LSFALWDART 341 (838)
Q Consensus 271 ~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~--~~~s~~v~~las~~~~~~V~s~s-~-~tI~lWD~~t 341 (838)
+ ++.. .+........ .++.. .-....+..+..++++..|+.++ + ..+..|.+..
T Consensus 150 ~~~~~~g~~~-~~~~~~~~~~----------------~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 150 KLGEGMSRAI-AVTIDGTETL----------------VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp CTTSCCCCCE-ESCSCCBTTE----------------EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred cccccCCCcE-EeccCCCCCe----------------EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 6 4322 1111000000 00000 00001134566777777776654 1 1122111100
Q ss_pred ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
.................. ......++++... ......+. ....+...
T Consensus 213 ------~~~~~~~~~~~~y~~~g~--~~~~~~l~~~d~~----------------------~~~~~~~~---~~~~~~~~ 259 (706)
T 2z3z_A 213 ------YHPLEAESKPLYYPMAGT--PSHHVTVGIYHLA----------------------TGKTVYLQ---TGEPKEKF 259 (706)
T ss_dssp ------CCSSSCEEEEECCCBTTS--CCCEEEEEEEETT----------------------TTEEEECC---CCSCTTCE
T ss_pred ------cCCCCCceEEeeCCCCCC--CCCeeEEEEEECC----------------------CCceEeec---cCCCCcee
Confidence 000000000000000000 0000111111110 00000000 00123455
Q ss_pred eEEEEEcCCCc-EEEEECCC-----eEEEEcC-CCCeeeEee--cCCccE---E--EEEE--cCCEEEEEeeCCeEEEEe
Q 003217 422 TEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQ--YLPFAV---Q--CLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~Dg-----tIrlWD~-~g~~l~tl~--~H~~~V---~--sls~--dG~~LasGs~DgtIrlWD 485 (838)
+..++++|||+ |++++.|+ +|++||+ +|+..+.+. .+...+ . .+++ ||++|++++.|+.++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 77899999998 77777665 8999999 564555443 233222 2 4566 889999999999999997
Q ss_pred C--CCcccccccccccCEEE-EE--eCCCEEEEE-cCCC--Ceeeeec
Q 003217 486 L--EGNLLGGWVAHSSPVIK-MA--VGAGYIFTL-ANHG--GIRGWNV 525 (838)
Q Consensus 486 ~--~g~~i~~l~gH~~~V~s-la--~dg~~l~S~-S~Dg--tIrlWdl 525 (838)
. +++.+..+..|...|.+ ++ +|++.++.+ +.++ .+++|.+
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 5 47778888888888876 45 477777644 4444 3455543
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.58 E-value=1.2e-14 Score=165.36 Aligned_cols=111 Identities=14% Similarity=-0.018 Sum_probs=84.1
Q ss_pred CCCceEEEEEcCC-Cc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccc
Q 003217 418 DNRRTEALTTSID-GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG 492 (838)
Q Consensus 418 ~~~~v~ala~S~d-g~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~ 492 (838)
|...|.+++++|+ +. +++|+.||+|++||+ ++.++....+|...|+++++ +|++|++|+.||+|++||++++...
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 4445678889887 54 789999999999999 67677677789999999976 6899999999999999999866555
Q ss_pred ccccc-------ccCEEEEEeCC--CEEE-EEcCCCC------eeeeecCCC
Q 003217 493 GWVAH-------SSPVIKMAVGA--GYIF-TLANHGG------IRGWNVTSP 528 (838)
Q Consensus 493 ~l~gH-------~~~V~sla~dg--~~l~-S~S~Dgt------IrlWdl~s~ 528 (838)
.+..| ...|.++.+++ .+++ ..+.||. +++|++...
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 44443 34788888744 3443 3445543 889998653
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.57 E-value=4.2e-14 Score=152.96 Aligned_cols=69 Identities=4% Similarity=-0.161 Sum_probs=54.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcc
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~ 273 (838)
++++++++++++++.|++|++||+.++ +....+..+. ..+.+++|+|||+ + ++++.+++|.+||+.+++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 456778899999999999999999987 4555555443 2567899999997 5 466788999999997754
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.56 E-value=1.7e-14 Score=173.52 Aligned_cols=277 Identities=9% Similarity=0.001 Sum_probs=167.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc---cEEEEEEecCCC-EEEeeCC-------
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEG------- 261 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~D------- 261 (838)
.+.+++|+|||+++++ +.||+|++||+.++ +....+.+|.. .|.+++|||||+ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC--------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 4667899999998877 78999999999987 45566677765 499999999998 7888764
Q ss_pred --CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec
Q 003217 262 --GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (838)
Q Consensus 262 --gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~ 339 (838)
++|.+||+++++. ..+..... + ...+..++.++++..|+.++++.|++||+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~----------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEV----------------S----------NAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTC----------------C----------SCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEEEECCCCce-EeccCCcc----------------c----------cccccccEECCCCCEEEEEECCeEEEEEC
Confidence 7788999987543 11111000 0 11234456677888888887789999999
Q ss_pred cCccEEEEEecCCc-eEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC--c--EEEEeccCc
Q 003217 340 RTRELLKVFNIDGQ-IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD--A--VRRVAAKGG 414 (838)
Q Consensus 340 ~tg~~l~~l~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~--~--v~~v~~~g~ 414 (838)
.+++..+....+.. +.. ....+...++++ ......+.+++++..++....+ . +..+...
T Consensus 142 ~~g~~~~~~~~~~~~~~~----~g~~~~v~~ee~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~-- 205 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIY----NGLSDWLYEEEI----------LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY-- 205 (723)
T ss_dssp SSSCCEEEECCCBTTTEE----EEECCHHHHHTT----------SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC--
T ss_pred CCCceEEEecCCCCCceE----CcccceeEEEEe----------ccCcceEEECCCCCEEEEEEECCCccceEEeecc--
Confidence 99887655432111 000 000000000000 0011234566666554444322 1 1111110
Q ss_pred cccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecC------CccEEEEE--EcCCEEEEEee----CCeE
Q 003217 415 FGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL------PFAVQCLC--TFGSQIWVGYM----NGIV 481 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H------~~~V~sls--~dG~~LasGs~----DgtI 481 (838)
.......+..+.++++|.. ..+.+|++||+ ++++...+..| ...|.+++ +||++|++.+. +..|
T Consensus 206 ~~~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp SSSSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred CCcCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 0112234566777777652 23458999999 56666677654 56777765 58888877653 3689
Q ss_pred EEEeCC-Ccccccccc-cccCEE----EEE--eCCCEEEE--EcCCC------Ceeeee
Q 003217 482 QVLDLE-GNLLGGWVA-HSSPVI----KMA--VGAGYIFT--LANHG------GIRGWN 524 (838)
Q Consensus 482 rlWD~~-g~~i~~l~g-H~~~V~----sla--~dg~~l~S--~S~Dg------tIrlWd 524 (838)
++||++ +++...+.. |...|. +++ +||+.++. ...|+ .|.+||
T Consensus 283 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 283 TLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 999987 566555544 334433 344 58887764 44666 456666
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.56 E-value=7.2e-13 Score=143.25 Aligned_cols=283 Identities=9% Similarity=0.044 Sum_probs=157.6
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 003217 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SGs~DGtIrvW 218 (838)
++.+++ +.++.|++||+.+...... + .+.+...+.+++++|+|+.++ ++..++.|.+|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKS-----------------C--VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEE-----------------E--ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 445554 4688999999976543211 0 011012467899999998665 55678999999
Q ss_pred ECCCCccCCCCCcceeEEec-cc-----cccEEEEEEecCCC-EEEeeCC------------CcEEEEECCCcceeeecC
Q 003217 219 KMNARLLDSDDGFGEVLSWQ-AH-----RGPVLSLCISSYGD-LWSGSEG------------GGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~-gH-----~~~V~slafs~dG~-L~SgS~D------------gtIrvWd~~~~~~~~~~~ 279 (838)
|+.++ +....+. +| ...+.+++|+|||+ |++++.+ +.|.+||+.+++.....
T Consensus 71 d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 71 DLDTC--------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp ETTTT--------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred eCCCC--------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 99886 4444444 22 23478899999998 6777755 89999999763211000
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
..+ . + ...+.++++++++. ++.++ ..|.+||+.+++++..+...... ....
T Consensus 142 ------~~~---------~-~----------~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~-~~~~ 192 (349)
T 1jmx_B 142 ------RTF---------P-M----------PRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWN-RKGY 192 (349)
T ss_dssp ------EEE---------E-C----------CSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCC-CTTB
T ss_pred ------eec---------c-C----------CCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccC-Cccc
Confidence 000 0 0 11244566677776 55554 34999999999988776532100 0000
Q ss_pred cccCcccccccceeeEEEecCCCCcc---eeeeeEeecCc-----------ceeeecCC-cEEEEeccCccccCCCceEE
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKA---QSSFGFFQRSR-----------NAIMGAAD-AVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~---~~s~~~~~~~~-----------~~~~g~~~-~v~~v~~~g~~~~~~~~v~a 424 (838)
..+..... +........ ...+.+.+++. ........ .+..+. +......+..
T Consensus 193 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 259 (349)
T 1jmx_B 193 SAPDVLYF---------WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----FADLTELYFT 259 (349)
T ss_dssp CCCBCCCC---------CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE----EEECSSCEEE
T ss_pred cCccceee---------ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc----cccCCCccee
Confidence 00000000 000000000 00011110000 00011111 111111 1112345677
Q ss_pred EEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-Cccccccccc
Q 003217 425 LTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 425 la~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (838)
++++| ||. ++++ ++.|.+||+ +++.++.+..+. .+.++ +++|++|++++.++.|++||++ ++.+..+..+
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 88999 987 4555 789999999 677777775432 34455 4578888888889999999987 5666555433
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=3.5e-13 Score=144.76 Aligned_cols=258 Identities=10% Similarity=0.074 Sum_probs=156.5
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccc-cEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRG-PVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~-~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
++|++++.|++|++||+.++ +....+. ++.. .+.+++|+|+|+ | ++++.++.|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47899999999999999986 4455544 3322 478899999996 5 577778999999997754322221
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-------------CCCcEEEEeccCccEEE
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-------------GFLSFALWDARTRELLK 346 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-------------s~~tI~lWD~~tg~~l~ 346 (838)
...... + ...+..++.++++..++.+ .++.|.+||+.+++.+.
T Consensus 74 ~~~~~~--------------~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 74 LSTPEE--------------R----------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CCBTTE--------------E----------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cCCccc--------------c----------cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 100000 0 0012345666777777776 35789999999998877
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-cCc----cccCCCc
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KGG----FGDDNRR 421 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g~----~~~~~~~ 421 (838)
.+.....+ ..+.++ +++..++++ ...+..+.. .+. +..+. .
T Consensus 130 ~~~~~~~~-~~~~~s-------------------------------~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~ 175 (337)
T 1pby_B 130 AFEAPRQI-TMLAWA-------------------------------RDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-W 175 (337)
T ss_dssp EEECCSSC-CCEEEC-------------------------------TTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-T
T ss_pred EEeCCCCc-ceeEEC-------------------------------CCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-c
Confidence 66532211 111222 222222222 111222221 111 11111 0
Q ss_pred eEEEEEcCCCc-EEEEE-CCC-----------------------eEEEEcC-CCCee-eEeecCCccEEEEE--EcCCEE
Q 003217 422 TEALTTSIDGM-IWTGG-ANG-----------------------LLLQWDP-NGNRL-QDFQYLPFAVQCLC--TFGSQI 472 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs-~Dg-----------------------tIrlWD~-~g~~l-~tl~~H~~~V~sls--~dG~~L 472 (838)
...+.++|||. ++..+ .++ .|.+||+ ++++. ..+..|...+.+++ ++|++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 01236788876 44333 222 4789999 56653 23445666676665 478899
Q ss_pred EEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+++ ++.|++||++ ++.+..+..+ ..+.+++ +|++++++++.|+.|++||+.+...
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred EEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 988 7999999997 5666665543 3456665 4788899889999999999876543
No 156
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.55 E-value=2.1e-13 Score=142.78 Aligned_cols=213 Identities=10% Similarity=-0.064 Sum_probs=145.0
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC-cceeeecCCCceee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHT 285 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~-~~~~~~~~~~~~~~ 285 (838)
+++.|++|++||+.++ ....+..|.+.|.+++|+|||+ |++++ ++.|++||+.+ ++.........
T Consensus 17 ~~~~~~~i~~~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--- 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--- 83 (297)
T ss_dssp -CCCCEEEEEEETTTT---------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---
T ss_pred CCCcceeEEEEeCCCC---------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---
Confidence 4568899999999886 3446678999999999999999 56665 88999999977 54322111100
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC---CcEEEEec--cCccEEEEEecCCceEEeeec
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~---~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~ 360 (838)
...+..++.++++..++.+.. ...+||.+ .+++. ..+
T Consensus 84 -------------------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------------ 125 (297)
T 2ojh_A 84 -------------------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM------------ 125 (297)
T ss_dssp -------------------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC------------
T ss_pred -------------------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe------------
Confidence 112334556667776666552 24455543 22221 000
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EE-EEEC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGA 438 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~-Sgs~ 438 (838)
.. ...+..++++|||. |+ +++.
T Consensus 126 -------------------------------------------------------~~-~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 126 -------------------------------------------------------TK-NLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp -------------------------------------------------------CS-SSSEEEEEECTTSSEEEEEEEE
T ss_pred -------------------------------------------------------ec-CCCccceEECCCCCEEEEEECC
Confidence 00 01144577899987 54 7778
Q ss_pred CCeEEEEcC--CCCeeeEeecCCccEEEEEE--cCCEEEEEe-eCCeEEEEeC--CCcccccccccccCEEEEE--eCCC
Q 003217 439 NGLLLQWDP--NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDL--EGNLLGGWVAHSSPVIKMA--VGAG 509 (838)
Q Consensus 439 DgtIrlWD~--~g~~l~tl~~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~--~g~~i~~l~gH~~~V~sla--~dg~ 509 (838)
|+.+++|++ .+.....+..|...+.++++ +|++|+.++ .++.++||++ .+..+..+..|...+.+++ ++|+
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 999999996 45566777788888988865 788887766 5899999986 4667778888888888877 4788
Q ss_pred EEEEEcCC-----------CCeeeeecCC
Q 003217 510 YIFTLANH-----------GGIRGWNVTS 527 (838)
Q Consensus 510 ~l~S~S~D-----------gtIrlWdl~s 527 (838)
+++.++.+ +.|.+||+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 89888766 4588888654
No 157
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.54 E-value=1.5e-12 Score=140.46 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=145.1
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEEEEECCCcce
Q 003217 198 VGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEK 274 (838)
Q Consensus 198 a~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~~~~~ 274 (838)
.|++++ ..+++++.+++|++||+.++ +....+..+...+ +++|+|||+ |+.++ .++.|.+||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 344444 45778889999999999987 4555556666667 999999998 66554 489999999976542
Q ss_pred -eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEE-EEEcCCCCEEEEeCCC----cEEEEeccCccEEEEE
Q 003217 275 -ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKN-LLSDHSRAKVWSAGFL----SFALWDARTRELLKVF 348 (838)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~-las~~~~~~V~s~s~~----tI~lWD~~tg~~l~~l 348 (838)
...... ...... +++++++..++++... .|.+||+.+++++..+
T Consensus 75 ~~~~~~~------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (331)
T 3u4y_A 75 KVVAIQE------------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI 124 (331)
T ss_dssp EEEEEEE------------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred eEEeccc------------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence 111100 111223 5667778877755544 8999999988875543
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
..+ .....++++
T Consensus 125 ~~~--------------------------------------------------------------------~~~~~~~~s 136 (331)
T 3u4y_A 125 PIP--------------------------------------------------------------------YDAVGIAIS 136 (331)
T ss_dssp ECC--------------------------------------------------------------------TTEEEEEEC
T ss_pred ECC--------------------------------------------------------------------CCccceEEC
Confidence 211 012357788
Q ss_pred CCCc-EEEE-ECCCe-EEEEcCC--CCee---eEeecCCccEEEEE--EcCCEEEEEe-eCCeEEEEeCC-Ccc---ccc
Q 003217 429 IDGM-IWTG-GANGL-LLQWDPN--GNRL---QDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNL---LGG 493 (838)
Q Consensus 429 ~dg~-l~Sg-s~Dgt-IrlWD~~--g~~l---~tl~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~-g~~---i~~ 493 (838)
|||+ ++++ ..++. |.+|++. |... .....+...+.+++ ++|++|++++ .++.|++||++ ++. +..
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9986 6544 45577 9999983 3322 11112334456654 4788776655 58999999987 666 666
Q ss_pred ccccccCEEEEE--eCCCEEEE-EcCCCCeeeeecCC
Q 003217 494 WVAHSSPVIKMA--VGAGYIFT-LANHGGIRGWNVTS 527 (838)
Q Consensus 494 l~gH~~~V~sla--~dg~~l~S-~S~DgtIrlWdl~s 527 (838)
+..+ ..+..++ +||++++. ...++.|.+||+.+
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 6544 4455555 57887654 45688899999765
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.54 E-value=7.7e-12 Score=132.42 Aligned_cols=234 Identities=8% Similarity=0.107 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec------cccccEEEEEE-ecCCCEEEeeC--CC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCI-SSYGDLWSGSE--GG 262 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~------gH~~~V~slaf-s~dG~L~SgS~--Dg 262 (838)
..+.+++++++|+++++.+.++.|++||.++ +....+. +|...+.+|++ .++|+||.+.. ++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 4688999999999888889999999999874 3344442 45568899999 47888765553 89
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t 341 (838)
.|++|+.+. .....+... .......++.++++..+++.. .+.|.+||..
T Consensus 101 ~i~~~d~~g-~~~~~~~~~----------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 101 QIQIYNQYG-QFVRKFGAT----------------------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp EEEEECTTS-CEEEEECTT----------------------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEEEECCCC-cEEEEecCc----------------------------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 999999533 211111000 012355677777665444433 4578888853
Q ss_pred ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
++.+..+... .+...
T Consensus 151 g~~~~~~~~~-----------------------------------------------------------------~~~~~ 165 (286)
T 1q7f_A 151 GNVLHKFGCS-----------------------------------------------------------------KHLEF 165 (286)
T ss_dssp SCEEEEEECT-----------------------------------------------------------------TTCSS
T ss_pred CCEEEEeCCC-----------------------------------------------------------------CccCC
Confidence 4433322100 01122
Q ss_pred eEEEEEcCCCcEEEEE-CCCeEEEEcCCCCeeeEeecC--CccEEEEEE--cCCEEEEEeeCC-eEEEEeCCCccccccc
Q 003217 422 TEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNG-IVQVLDLEGNLLGGWV 495 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs-~DgtIrlWD~~g~~l~tl~~H--~~~V~sls~--dG~~LasGs~Dg-tIrlWD~~g~~i~~l~ 495 (838)
+..++++++|.++.+. .++.|++||.+|+.+.++..+ ...+..+++ +|+.+++...++ .|++||.+|+.+..+.
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 4568889999976554 578999999999888887654 357788876 465555555565 9999999888877777
Q ss_pred cccc--CEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 496 AHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 496 gH~~--~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.|.. .+.++++ +|+.+++ +.|++|++|++....|
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 6643 3667764 6766666 6799999999765443
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.53 E-value=7.7e-14 Score=168.01 Aligned_cols=285 Identities=10% Similarity=-0.037 Sum_probs=166.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc---cEEEEEEecCCC-EEEeeC---------CC
Q 003217 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSE---------GG 262 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~---------Dg 262 (838)
+++|+|+|++++++ .|++|++||+.++ +....+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 67899999766654 6999999999987 45555566654 499999999998 777765 79
Q ss_pred cEEEEECCCccee--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEecc
Q 003217 263 GIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (838)
Q Consensus 263 tIrvWd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~ 340 (838)
+|++||+++++.. ..+ ...+..++.+++|..|+.+.++.|++||+.
T Consensus 91 ~i~~~d~~~g~~~~~~~l--------------------------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNEL--------------------------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp EEEEEETTTTEECCSSCC--------------------------------CSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred EEEEEECCCCccccceec--------------------------------CcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 9999999775421 000 112445677888888888888899999999
Q ss_pred CccEEEEEe-cCCc-eE----------------EeeecccCcccccc----c-ceeeEEEecCCCC--cceeeeeEeecC
Q 003217 341 TRELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAME----D-EFKTKIVTSSKKD--KAQSSFGFFQRS 395 (838)
Q Consensus 341 tg~~l~~l~-~~~~-~~----------------~~~~~s~~~~~~~~----~-~~~~~~~s~~~~~--~~~~s~~~~~~~ 395 (838)
++++.+... ++.. +. ..+.++++....+. + .++.......... .....+.+.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp--- 215 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP--- 215 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC---
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC---
Confidence 988754321 1111 00 12233333222110 0 0000000000000 000000000
Q ss_pred cceeeecCC---cEEEEecc-Cc------------cccCCCceEEEEEcCCCcEEEE-EC--C--CeEEEEc----C-CC
Q 003217 396 RNAIMGAAD---AVRRVAAK-GG------------FGDDNRRTEALTTSIDGMIWTG-GA--N--GLLLQWD----P-NG 449 (838)
Q Consensus 396 ~~~~~g~~~---~v~~v~~~-g~------------~~~~~~~v~ala~S~dg~l~Sg-s~--D--gtIrlWD----~-~g 449 (838)
..|... .++.+... +. +..+...+..+++|||++++.. .. + ..|.+|| + +|
T Consensus 216 ---~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 216 ---KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp ---BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred ---CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 001111 11222211 11 2245667889999999986533 22 2 2488999 8 56
Q ss_pred CeeeEe----ecCCccEE-----E--EEEcCCEEEE--EeeCC--eEEEEeCCCcccccccccccCEEEEE-eCCCEEEE
Q 003217 450 NRLQDF----QYLPFAVQ-----C--LCTFGSQIWV--GYMNG--IVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFT 513 (838)
Q Consensus 450 ~~l~tl----~~H~~~V~-----s--ls~dG~~Las--Gs~Dg--tIrlWD~~g~~i~~l~gH~~~V~sla-~dg~~l~S 513 (838)
++...+ .+|..+|. + +++||+.|+. +..+| .|.+||+.+.....+..+...|..+. .+++.++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~ 372 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFY 372 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEE
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEE
Confidence 666666 46776655 3 4568886554 33444 67788887655666777776776643 37777765
Q ss_pred EcC-----CCCeeeeecCC
Q 003217 514 LAN-----HGGIRGWNVTS 527 (838)
Q Consensus 514 ~S~-----DgtIrlWdl~s 527 (838)
.+. ++++++|.+..
T Consensus 373 ~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EESCGGGCTTCBEEEEEEC
T ss_pred EEecCCCCCceEEEEEEeC
Confidence 554 48899999764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.52 E-value=4e-13 Score=157.86 Aligned_cols=253 Identities=14% Similarity=0.075 Sum_probs=159.3
Q ss_pred EEecCCEEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC---C
Q 003217 138 IVCTEEQLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR---D 212 (838)
Q Consensus 138 l~~~~~~l~~-g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~---D 212 (838)
+..+++.|.. +. |++++||+++...... ++. ++...|.+++|+|| +++++++. +
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~~~------------------lt~--~~~~~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDGGETVK------------------LNR--EPINSVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTEEEE------------------CCS--SCCSEECEECTTCS-EEEEEEECSTTS
T ss_pred cCCCCCeEEEEEccCCceeEEEEcCCCcEe------------------eec--ccccccccccCCCC-eEEEEeccCCCC
Confidence 3456676654 44 8999999974322110 111 10357899999999 89998886 5
Q ss_pred CcEEEEECCC--CccCCCCCcceeEEeccccccEEEEEEecCCC--E-EEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 213 GRIMCWKMNA--RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 213 GtIrvWd~~~--g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
...++|.+.. .. ... .+..+. .+...+|+|||+ + ++++.|+++ |||+++++... +..
T Consensus 88 ~~~~l~~~~~~~~g-------~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~-l~~------- 149 (582)
T 3o4h_A 88 EQHALFKVNTSRPG-------EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRE-LAR------- 149 (582)
T ss_dssp CCEEEEEEETTSTT-------CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEE-EEE-------
T ss_pred cceEEEEEeccCCC-------ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEE-eec-------
Confidence 5667766543 20 122 332222 233568888885 3 455555555 99997653211 100
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-C----CcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F----LSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~----~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
... ..++++++|..|++++ + .+|++||+.++++. .+..
T Consensus 150 -----------------------~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~------------ 192 (582)
T 3o4h_A 150 -----------------------LPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS------------ 192 (582)
T ss_dssp -----------------------ESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC------------
T ss_pred -----------------------CCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec------------
Confidence 001 3455666777776444 3 46889998887652 2211
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCC-
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG- 440 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dg- 440 (838)
+...+..++|||||+ |+++..++
T Consensus 193 -------------------------------------------------------~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 193 -------------------------------------------------------GEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp -------------------------------------------------------SSCEEEEEEECTTSCEEEEEECSSC
T ss_pred -------------------------------------------------------CCCccccceECCCCCEEEEccCCCe
Confidence 112234678999998 67777788
Q ss_pred -eEEEEcC-CCCeeeEeecCCccEEE----------EEEcCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe-C
Q 003217 441 -LLLQWDP-NGNRLQDFQYLPFAVQC----------LCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-G 507 (838)
Q Consensus 441 -tIrlWD~-~g~~l~tl~~H~~~V~s----------ls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-d 507 (838)
.|++||+ +|++. .+.+|...|.+ +++||..+++++.|++++||++ |+++... .+.|.++++ +
T Consensus 218 ~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~---~~~v~~~~~sd 292 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAP---QGNHGRVVLWR 292 (582)
T ss_dssp EEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCC---SSEEEEEEEET
T ss_pred eEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccC---CCceEEEEecC
Confidence 8999999 56666 77777765542 5568988889999999999999 8766533 355766654 7
Q ss_pred CCEEEEEcCCCC---eeeeecC
Q 003217 508 AGYIFTLANHGG---IRGWNVT 526 (838)
Q Consensus 508 g~~l~S~S~Dgt---IrlWdl~ 526 (838)
++.+++++.+.+ |.+|+..
T Consensus 293 g~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 293 GKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETTC
T ss_pred CEEEEEEcCCCCCCeEEEEcCC
Confidence 778888887755 5555543
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.52 E-value=2.5e-13 Score=154.49 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=114.3
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCC-CCCCceeeecCCCCeEEEEEcCCCCEEE----EEeC
Q 003217 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGED-GTAPFKESVKGVSSVMCMVGDEASGVVW----SGHR 211 (838)
Q Consensus 137 ~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~~~V~~la~s~dg~~La----SGs~ 211 (838)
++......++++...+++||+......... .+...... ...+. ..+...++|.+++|+|+|++|+ ||+.
T Consensus 43 avs~~~~~l~~~~~dgv~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 43 AVSNKYGLVFAGGASGLQIFPTKNLLIQNK-----PGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHCCCCC-----TTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred EEecCCCEEEEECCCEEEEEEchHhhhhcc-----cccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 445556678777656699998743211100 00000000 00010 1122256799999999999999 8999
Q ss_pred CCcEEEEECCCCccC---CCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 212 DGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 212 DGtIrvWd~~~g~~~---~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|++|++||+.++... ....+.....+.+|.+.|++|+|+|+ +. |+||+.||+|++||+.+........
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~------- 189 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL------- 189 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-------
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-------
Confidence 999999998653000 00112234567899999999999998 56 7899999999999997642211110
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+| ...+.+++.++++..+++++ +++|++||++ ++...++
T Consensus 190 ------------~~----------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 190 ------------PS----------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp ------------CG----------GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred ------------CC----------CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 11 34678889988888888877 6799999998 5554443
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=4.4e-12 Score=139.90 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=153.2
Q ss_pred EEEcCCCCEEEEEeC-CCc--EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCc
Q 003217 197 MVGDEASGVVWSGHR-DGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 197 la~s~dg~~LaSGs~-DGt--IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~ 272 (838)
.+|+|||+.|+.++. ||. |.+||+.++ +......+|...+.+++|+|||+ |+.++.++.|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 689999999999887 774 778888886 44455566766666788999998 888999999999999876
Q ss_pred ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE----------------------e-
Q 003217 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS----------------------A- 329 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s----------------------~- 329 (838)
+.............. . ....++++..++. .
T Consensus 113 ~~~~~~~~~~~~~~~--------------------------~-~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 113 EENVVYQVPAEWVGY--------------------------G-TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEEEEEECCTTEEEE--------------------------E-EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred cceeeeechhhcccc--------------------------c-ceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 543221111110000 0 0111233333321 1
Q ss_pred CCCcEEEEeccCccEEEEEecCCceEEeeeccc-CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE
Q 003217 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (838)
Q Consensus 330 s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (838)
....|.+||+.+++......... ....+.+++ ..... ........... ...++.
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l-------~~~~~~~~~~~-----------------~~~l~~ 220 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTV-------AFCHEGPHDLV-----------------DARMWL 220 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEE-------EEEECSCTTTS-----------------SCSEEE
T ss_pred CcceEEEEECCCCceEEeecCCc-cccccEECCCCCCEE-------EEEEecCCCCC-----------------cceEEE
Confidence 12468899999998755443322 223333333 21111 00010000000 001222
Q ss_pred EeccC----ccccCC--CceEEEEEcCCCc-EEEEEC-CC----eEEEEcC-CCCe--eeEeecCCccE-----EEEEEc
Q 003217 409 VAAKG----GFGDDN--RRTEALTTSIDGM-IWTGGA-NG----LLLQWDP-NGNR--LQDFQYLPFAV-----QCLCTF 468 (838)
Q Consensus 409 v~~~g----~~~~~~--~~v~ala~S~dg~-l~Sgs~-Dg----tIrlWD~-~g~~--l~tl~~H~~~V-----~sls~d 468 (838)
+...+ .+..+. ..+..+++||||+ |+..+. ++ .|.+||+ +|+. +..+.++.... ..+++|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 22111 112222 2466788999998 654442 22 4999999 5653 33333311111 147889
Q ss_pred CCEEEEE---------eeCCeEEEEeCCCccccccccccc-----------CEEEEE--eCCCEEEEEc-CCCCeeeeec
Q 003217 469 GSQIWVG---------YMNGIVQVLDLEGNLLGGWVAHSS-----------PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (838)
Q Consensus 469 G~~LasG---------s~DgtIrlWD~~g~~i~~l~gH~~-----------~V~sla--~dg~~l~S~S-~DgtIrlWdl 525 (838)
|++|+.. ..+..|++||+++..+..+..|.. .+.+++ +||+.|+..+ .++...+|.+
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 9977753 446799999998665666776765 455444 6888877554 6888889886
Q ss_pred CC
Q 003217 526 TS 527 (838)
Q Consensus 526 ~s 527 (838)
..
T Consensus 381 ~l 382 (388)
T 3pe7_A 381 TL 382 (388)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.48 E-value=5.5e-13 Score=160.51 Aligned_cols=316 Identities=8% Similarity=-0.026 Sum_probs=169.8
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC--CCCeEEEEEcCCCCEEEEEeC---------CC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHR---------DG 213 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~V~~la~s~dg~~LaSGs~---------DG 213 (838)
++.+.|++|++||+.+...... .. .+. ...|.+++|||||++|++++. |+
T Consensus 30 ~~~~~d~~i~~~~~~~g~~~~~------------------~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 30 LHQSADNNIVLYNIETGQSYTI------------------LS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp EEECTTSCEEEEESSSCCEEEE------------------EC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEE------------------Ec-cccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 3345689999999976543211 01 010 124889999999999999887 79
Q ss_pred cEEEEECCCCccCCCCCccee--EEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 214 RIMCWKMNARLLDSDDGFGEV--LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~--~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|++||+.++. .. ..+ ...|.+++|||||+ |++++ |++|++|++.+++.. .+.........
T Consensus 91 ~i~~~d~~~g~--------~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v--- 154 (719)
T 1z68_A 91 TYYIYDLSNGE--------FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKI--- 154 (719)
T ss_dssp EEEEEETTTTE--------ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTE---
T ss_pred EEEEEECCCCc--------cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCe---
Confidence 99999999862 21 222 35688999999998 77765 789999999775432 12111100000
Q ss_pred eeceeecccceeccceeee-ecCCeEEEEEcCCCCEEEEeCC-----------------------------------CcE
Q 003217 291 ERSYIDLRSHLSVNGFSSI-LTSDIKNLLSDHSRAKVWSAGF-----------------------------------LSF 334 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~-~s~~v~~las~~~~~~V~s~s~-----------------------------------~tI 334 (838)
+.++ ...+..- .......++.++++..|+.++. .+|
T Consensus 155 ------~~g~--~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 155 ------FNGI--PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp ------EESS--CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred ------Eccc--ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 0000 0000000 0001123445555555554431 167
Q ss_pred EEEeccCccEE---EE-----EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcE
Q 003217 335 ALWDARTRELL---KV-----FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV 406 (838)
Q Consensus 335 ~lWD~~tg~~l---~~-----l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v 406 (838)
++||+.+++.+ .. +..+......+.++++....+ ....+.. ... .+
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~--------~~~~~~~-~~~-----------------~l 280 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL--------QWLKRVQ-NVS-----------------VL 280 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE--------EEEESST-TEE-----------------EE
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEE--------EEecccc-CeE-----------------EE
Confidence 78998887642 11 112333333444444311100 0000000 000 01
Q ss_pred EEEe----c-cC----cc----ccCCCceE-----EEEEcCCCc-EEE--EECCC--eEEEEcCCCCeeeEeecCCccEE
Q 003217 407 RRVA----A-KG----GF----GDDNRRTE-----ALTTSIDGM-IWT--GGANG--LLLQWDPNGNRLQDFQYLPFAVQ 463 (838)
Q Consensus 407 ~~v~----~-~g----~~----~~~~~~v~-----ala~S~dg~-l~S--gs~Dg--tIrlWD~~g~~l~tl~~H~~~V~ 463 (838)
+.+. . .+ .+ ..+...+. .++++|||+ ++. +..++ .|.+||+.+...+.++.+...|.
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~ 360 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAI 360 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEE
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEE
Confidence 1111 1 00 11 12333344 678999997 433 33454 68888885544667776666666
Q ss_pred EEE-EcCCEEEEEeeC-----CeEEEEeCC---Cc----ccc-cccccccCEEEEE--eCCCEEE-EEcCC--CCeeeee
Q 003217 464 CLC-TFGSQIWVGYMN-----GIVQVLDLE---GN----LLG-GWVAHSSPVIKMA--VGAGYIF-TLANH--GGIRGWN 524 (838)
Q Consensus 464 sls-~dG~~LasGs~D-----gtIrlWD~~---g~----~i~-~l~gH~~~V~sla--~dg~~l~-S~S~D--gtIrlWd 524 (838)
.+. .+|+.|+..+.+ +.++||.+. +. ++. .+.+|...+..+. +|+++++ +++.+ ..+.+|+
T Consensus 361 ~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 361 NIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 542 288877776654 889999853 32 222 1344777777665 4677655 55544 4678898
Q ss_pred cCCCC
Q 003217 525 VTSPG 529 (838)
Q Consensus 525 l~s~~ 529 (838)
+.+..
T Consensus 441 ~~~g~ 445 (719)
T 1z68_A 441 GRTDQ 445 (719)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.46 E-value=2.6e-11 Score=132.92 Aligned_cols=254 Identities=9% Similarity=0.086 Sum_probs=150.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtI 264 (838)
...+..++|+|+|++|++++.+ +.|++|+++... ..++.+.....+......+++ +|+ |++++ .+++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4567779999999999999986 799999986521 011223334445567778888 777 66554 68999
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCc
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg 342 (838)
.+|++.......... .. . ...+.+... .......+..+++++++..++.+. ++.|.+|++...
T Consensus 123 ~~~~~~~~g~~~~~~---~~-~---------~~~g~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 123 TVFPIGQDGALLPAS---DV-I---------EFKGSGPDK--ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EEEEBCTTSCBCSCS---EE-E---------ECCCCCSCT--TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCcCcccc---ee-E---------EccCCCCCc--cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 999996532111100 00 0 000000000 000022356788888888666554 468999987643
Q ss_pred cE------EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 343 EL------LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 343 ~~------l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
.. +.... .. . ... .
T Consensus 188 ~~~~~~~~l~~~~---~~------------------~--~~~-------------------------------------~ 207 (361)
T 3scy_A 188 ANADNKEKFLTKG---TP------------------E--AFK-------------------------------------V 207 (361)
T ss_dssp CCTTTCCCCEEEE---EE------------------E--EEE-------------------------------------C
T ss_pred CCcccccceeecc---cc------------------c--cee-------------------------------------c
Confidence 21 00000 00 0 000 0
Q ss_pred cCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC-CCCe--eeEeec---CCccEEEEE--EcCCEEEEEeeC--CeEEEE
Q 003217 417 DDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-NGNR--LQDFQY---LPFAVQCLC--TFGSQIWVGYMN--GIVQVL 484 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~-~g~~--l~tl~~---H~~~V~sls--~dG~~LasGs~D--gtIrlW 484 (838)
.....+..++|+|||+ +++++ .+++|.+||+ +|+. ++.+.. +.....+++ +||++|+++..+ ++|++|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 0112234688999997 66666 5899999999 5643 333332 333455554 589999877754 899999
Q ss_pred eCC---Cc--ccccccccccCEEEEE--eCCCEEEEEc-CCCCeeeeecC
Q 003217 485 DLE---GN--LLGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 485 D~~---g~--~i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
++. ++ .+..+.. ...+.+++ +||++|+.++ .+++|++|.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 974 44 3333433 34556665 5788888776 67899998764
No 165
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.44 E-value=1.1e-11 Score=134.91 Aligned_cols=206 Identities=12% Similarity=0.040 Sum_probs=128.8
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc---------ccccEEEEEEecCCCE-EEee
Q 003217 191 VSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA---------HRGPVLSLCISSYGDL-WSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~g---------H~~~V~slafs~dG~L-~SgS 259 (838)
...+.+++++|+|++|++++ .+++|++|++.... ....+..+.. +...+.+++|+|||+| +++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG-----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS-----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC-----CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 45678899999999999888 67999999996320 1122222211 1235899999999996 4666
Q ss_pred CCCcEEEEECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEE
Q 003217 260 EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (838)
Q Consensus 260 ~DgtIrvWd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~l 336 (838)
.++.|++|++.. +.... . ..+ .. . .......+++++++..++.+. ++.|.+
T Consensus 160 ~~~~v~~~~~~~~g~~~~-~-------~~~-------~~----~-------~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSE-Q-------SVL-------TM----E-------AGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp TTTEEEEEEECTTSCEEE-E-------EEE-------EC----C-------TTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEEECCCCcEEE-e-------eeE-------Ec----C-------CCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 789999999962 21110 0 000 00 0 012345678888888666643 467999
Q ss_pred EeccC--ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc
Q 003217 337 WDART--RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (838)
Q Consensus 337 WD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (838)
|++.. +++..... ..... . .
T Consensus 214 ~~~~~~~g~~~~~~~---------------------------~~~~~-~------------------------------~ 235 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGI---------------------------VKTIP-A------------------------------D 235 (347)
T ss_dssp EEEETTTTEEEEEEE---------------------------EESSC-T------------------------------T
T ss_pred EEecCCCCceEEeee---------------------------eeecC-C------------------------------C
Confidence 98864 44311100 00000 0 0
Q ss_pred cccCCCceEEEEEcCCCc-E-EEEECCCeEEEEcCC--C--CeeeEeecCCccEEEEE--EcCCEEEEEee-CCeEEEEe
Q 003217 415 FGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDPN--G--NRLQDFQYLPFAVQCLC--TFGSQIWVGYM-NGIVQVLD 485 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l-~Sgs~DgtIrlWD~~--g--~~l~tl~~H~~~V~sls--~dG~~LasGs~-DgtIrlWD 485 (838)
+ .....+..++++|||+ | +++..+++|.+||+. | +.+..+..|...+.+++ +||++|++++. ++.|.+|+
T Consensus 236 ~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 236 Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 0 0112355788999997 5 455668999999984 4 45566666666666665 47899988876 48999994
Q ss_pred C
Q 003217 486 L 486 (838)
Q Consensus 486 ~ 486 (838)
+
T Consensus 315 ~ 315 (347)
T 3hfq_A 315 R 315 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 166
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.44 E-value=6.7e-12 Score=135.00 Aligned_cols=222 Identities=12% Similarity=0.133 Sum_probs=137.3
Q ss_pred EEEEEeCCCcEEEEECCC-CccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC-CcEEEEECC--CcceeeecC
Q 003217 205 VVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-GGIKIWPWE--AIEKALSLK 279 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-gtIrvWd~~--~~~~~~~~~ 279 (838)
++++++.|+.|++|+++. +. ........|...+.+++|+|+|+ |++++.+ ++|++|+++ ++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--- 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--- 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---
T ss_pred EEEeCCCCCeEEEEEECCCCc-------EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee---
Confidence 444558899999999963 21 12233346778899999999998 7777766 999999986 322110
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
...+ .. ...+..+++++++..++.++ ++.|.+||+.++........
T Consensus 77 -----~~~~---------~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------- 124 (343)
T 1ri6_A 77 -----AAES---------AL-----------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV------- 124 (343)
T ss_dssp -----EEEE---------EC-----------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-------
T ss_pred -----cccc---------cc-----------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-------
Confidence 0000 00 11345677778888776654 46799999853321111000
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.. ....+.+++++|||. ++++
T Consensus 125 -------------------~~---------------------------------------~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 125 -------------------VE---------------------------------------GLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp -------------------EC---------------------------------------CCTTBCCCEECTTSSEEEEE
T ss_pred -------------------cc---------------------------------------CCCCceEEEECCCCCEEEEe
Confidence 00 001133567889986 6766
Q ss_pred E-CCCeEEEEcC-C-CCeee----Eeec-CCccEEEEEE--cCCEEEEEe-eCCeEEEEeCC---Ccc--ccccc----c
Q 003217 437 G-ANGLLLQWDP-N-GNRLQ----DFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE---GNL--LGGWV----A 496 (838)
Q Consensus 437 s-~DgtIrlWD~-~-g~~l~----tl~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~---g~~--i~~l~----g 496 (838)
+ .++.|++||+ + ++... .+.. ....+.++++ +|++|++++ .++.|++||+. +++ ..... +
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 6 7899999999 4 54432 2333 2346666654 788776655 78999999984 322 22221 2
Q ss_pred c--ccCEEEEE--eCCCEEE-EEcCCCCeeeeecC
Q 003217 497 H--SSPVIKMA--VGAGYIF-TLANHGGIRGWNVT 526 (838)
Q Consensus 497 H--~~~V~sla--~dg~~l~-S~S~DgtIrlWdl~ 526 (838)
| ...+.+++ +++++++ +.+.|+.|++|++.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2 23455666 4677776 66789999999986
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.42 E-value=3.6e-11 Score=130.86 Aligned_cols=250 Identities=11% Similarity=0.034 Sum_probs=163.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCccCCCCCcceeEEec-cccccEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD------------------------GRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVL 245 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D------------------------GtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~ 245 (838)
-+.|.+|+++|+|+++++.+.+ ++|.+||..++ +....+. ++-....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCce
Confidence 4589999999999999998888 47999999876 3344443 5566889
Q ss_pred EEEEecCCCE-EEeeCCCcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-C
Q 003217 246 SLCISSYGDL-WSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-S 322 (838)
Q Consensus 246 slafs~dG~L-~SgS~DgtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~ 322 (838)
+|+++++|+| ++.+.++.|++|+.++.. ....+..... .+...+ .-.....+++++ +
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----------------~g~~~~----~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----------------PGSDQN----HFCQPTDVAVEPST 154 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----------------CCCSTT----CCSSEEEEEECTTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----------------CCCCcc----ccCCCcEEEEeCCC
Confidence 9999999996 577778999999986532 1111100000 000000 012356778887 5
Q ss_pred CCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 323 ~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
+..+++.+ ...|++|| .+|+++..+...+.. ...
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~----------------------------~~~--------------- 190 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG----------------------------SSP--------------- 190 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS----------------------------SSC---------------
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC----------------------------CCC---------------
Confidence 55555553 46799999 567766555321100 000
Q ss_pred ecCCcEEEEeccCccccCCCceEEEEEcCC-CcEEE-EECCCeEEEEcCC-CCeeeEee--cCCccEEEEEEc-------
Q 003217 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWT-GGANGLLLQWDPN-GNRLQDFQ--YLPFAVQCLCTF------- 468 (838)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-g~l~S-gs~DgtIrlWD~~-g~~l~tl~--~H~~~V~sls~d------- 468 (838)
...+......++++++ |.|+. ...++.|++||.+ |+.+.++. .+...+.++++.
T Consensus 191 --------------~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 191 --------------RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp --------------CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred --------------CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 0001123456888888 78654 4567899999995 99998885 355566666543
Q ss_pred -CCEEEEEeeCCeEEEEeCC-Ccccccc---cccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 469 -GSQIWVGYMNGIVQVLDLE-GNLLGGW---VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 469 -G~~LasGs~DgtIrlWD~~-g~~i~~l---~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
|+..++.+.+.+|++||.. |+++..+ .+|...+.+|++ +|..+++.+.++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3322223345699999976 7877776 477888999885 56677788899999999975
No 168
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.41 E-value=2.4e-10 Score=139.60 Aligned_cols=352 Identities=16% Similarity=0.247 Sum_probs=211.5
Q ss_pred ceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 133 CFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 133 ~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
..+++|..+ .+.||+|++++|.+||..+...... .. ....+ ..+. .+.|.++..|++| .||.|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~D~~g-~lWigt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASY--------SS--NPVEN--GSLS-QRSVRSIFMDSQG-GMWLGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEE--------CC--CTTST--TSCS-SSCEEEEEECTTS-CEEEEES
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEE--------ec--CCCCC--CCCC-CCcEEEEEEeCCc-CEEEEEC
Confidence 457888887 4499999988999999765322110 00 00001 1233 5689999999876 5899999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec---c-ccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ---A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~---g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
++-|..|+..++. +....... + ....|.+|+.+++|.||.|+.++.|..|+..+..... +....
T Consensus 329 ~~Gl~~~~~~~~~------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~-~~~~~----- 396 (795)
T 4a2l_A 329 FGGLNYYHPIRNR------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS-YTLQE----- 396 (795)
T ss_dssp SSCEEEECGGGGS------SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE-ECCC------
T ss_pred CCCeEEeCCCccc------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE-EecCC-----
Confidence 8888888876531 11111000 0 2457999999999999999999899999986532110 00000
Q ss_pred EEEeeceeecccceecccee-eeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 288 LIVERSYIDLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~-~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
.... .++...|.+++.++.+..||.|+. +++.++|..++++.. +..... .+..
T Consensus 397 ----------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~-----~l~~--- 451 (795)
T 4a2l_A 397 ----------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNS-----QLVN--- 451 (795)
T ss_dssp ---------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTS-----CCSC---
T ss_pred ----------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCC-----CcCC---
Confidence 0000 112456788887766655898885 789999999887633 321100 0000
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Ccccc----------CCCceEEEEEcCCCcEE
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD----------DNRRTEALTTSIDGMIW 434 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~----------~~~~v~ala~S~dg~l~ 434 (838)
..+. ++. .+....+|+|+..|+.++... +.+.. ....|.++..+++|.||
T Consensus 452 ----~~v~--------------~i~-~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 452 ----ENVY--------------AIL-PDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp ----SCEE--------------EEE-ECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred ----CeeE--------------EEE-ECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 0000 011 111234577777777777642 22211 12568889999999999
Q ss_pred EEECCCeEEEEcCCCCeeeEee-------cCCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCccccccc----ccccCEE
Q 003217 435 TGGANGLLLQWDPNGNRLQDFQ-------YLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPVI 502 (838)
Q Consensus 435 Sgs~DgtIrlWD~~g~~l~tl~-------~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V~ 502 (838)
.|+.+| |.+||..+... .+. .+...|.++..|. ..||.|+.. .|..||..+.....+. ...+.|.
T Consensus 513 igt~~G-l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 513 IGGEEG-LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp EEESSC-EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred EEeCCc-eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheE
Confidence 999855 88999843333 332 2346799998864 378888876 7889998744322221 2345799
Q ss_pred EEEeCCCEEEEEcCCCCeeeeecCC-----CCCCchhhhhhhhccccccccccceeeEEEEE
Q 003217 503 KMAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTW 559 (838)
Q Consensus 503 sla~dg~~l~S~S~DgtIrlWdl~s-----~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~tw 559 (838)
++..|.+.-++.++++.|..|+..+ +...+++...++..........+. +++++-
T Consensus 590 ~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~ 649 (795)
T 4a2l_A 590 GILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQ--MYFGGI 649 (795)
T ss_dssp EEEECTTSCEEEEETTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSC--EEEEET
T ss_pred EEEECCCCCEEEEcCCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCe--EEEecC
Confidence 9988765545555577888888543 333455544444333333333444 777773
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.39 E-value=1.3e-11 Score=136.13 Aligned_cols=238 Identities=10% Similarity=0.046 Sum_probs=148.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCccCCCCCcceeEEecccc--ccEEEEEEecCCC---EEEee------
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYGD---LWSGS------ 259 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~-~g~~~~~~~~~~~~~l~gH~--~~V~slafs~dG~---L~SgS------ 259 (838)
..+..++++|+|++|++++.+ .|.+|++. ++ +...... |. +.+.+++|+|||+ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--------~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--------EIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--------EEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--------CEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCccee
Confidence 357789999999999999998 99999987 55 2222211 21 2345689999998 34553
Q ss_pred -------CCCcEEEEECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-
Q 003217 260 -------EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (838)
Q Consensus 260 -------~DgtIrvWd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s- 330 (838)
.++++++|++.. ++....+ ..+ .+ . ....+..+++++++..++++.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~-------~~~----------~~--~------~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNV-------QNY----------EY--Q------ENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEE-------EEE----------EC--C------TTCCEEEEEECTTSSEEEEEET
T ss_pred ccceeecCCceEEEEccCCCCcCcceE-------eeE----------Ee--C------CCCcceEEEECCCCCEEEEEcC
Confidence 799999999863 2211000 000 00 0 023466778888888777654
Q ss_pred -CCcEEEEecc-CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE
Q 003217 331 -FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (838)
Q Consensus 331 -~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (838)
.+.|++||+. +|++..... ..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~---------------------------~~------------------------------ 187 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGS---------------------------VD------------------------------ 187 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEE---------------------------EE------------------------------
T ss_pred CCCEEEEEEECCCCCEEEeee---------------------------Ee------------------------------
Confidence 4689999998 676421100 00
Q ss_pred EeccCccccCCCceEEEEEcCCCc-EEEEEC-CCeEEEEcC---CCCee---eEee-------cCCc------cEEEEE-
Q 003217 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDP---NGNRL---QDFQ-------YLPF------AVQCLC- 466 (838)
Q Consensus 409 v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~---~g~~l---~tl~-------~H~~------~V~sls- 466 (838)
+..+...+..++++|||+ +++++. +++|.+|+. +|+.. +++. +|.. .+..++
T Consensus 188 ------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 188 ------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp ------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred ------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 000012245678999996 666664 689999975 36542 2222 2232 466555
Q ss_pred --EcCCEEEEEeeCC------eEEEEeCC--Ccccc---cccccccCEE--EEEe---CCCEEEEEcCC-CCeeeeecCC
Q 003217 467 --TFGSQIWVGYMNG------IVQVLDLE--GNLLG---GWVAHSSPVI--KMAV---GAGYIFTLANH-GGIRGWNVTS 527 (838)
Q Consensus 467 --~dG~~LasGs~Dg------tIrlWD~~--g~~i~---~l~gH~~~V~--sla~---dg~~l~S~S~D-gtIrlWdl~s 527 (838)
+||++|+++..+. +|++||+. |++.. ....+...+. ++.+ ||++|++++.+ ++|++|++..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 5899998877533 89999974 55432 1222333233 3457 79999988764 8999999753
No 170
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.37 E-value=3.6e-10 Score=123.76 Aligned_cols=227 Identities=9% Similarity=0.077 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc--------ccccEEEEEEecCCC-EE-EeeC
Q 003217 192 SSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA--------HRGPVLSLCISSYGD-LW-SGSE 260 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--------H~~~V~slafs~dG~-L~-SgS~ 260 (838)
.....+++ ++++|++++ .+++|.+|++..... ...........+ +...+.+++|+|||+ |+ ++..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 34566777 778777776 578999999975310 000011111111 233468999999998 65 5556
Q ss_pred CCcEEEEECCCcce----e-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCc
Q 003217 261 GGGIKIWPWEAIEK----A-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (838)
Q Consensus 261 DgtIrvWd~~~~~~----~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~t 333 (838)
+++|++|+++.... . +.... ..... .+ ........+++++++..++.+. +++
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~---~~~~~-------~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKG---TPEAF-------KV-----------APGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEE---EEEEE-------EC-----------CTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCEEEEEEEcCCCCcccccceeecc---cccce-------ec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 89999999865321 0 11000 00000 00 0022356788888888776655 578
Q ss_pred EEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC
Q 003217 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (838)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (838)
|.+||+.++++...... ..
T Consensus 235 v~v~~~~~g~~~~~~~~---------------------------~~---------------------------------- 253 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTV---------------------------AA---------------------------------- 253 (361)
T ss_dssp EEEEEEETTEEEEEEEE---------------------------ES----------------------------------
T ss_pred EEEEEecCCceEEeEEE---------------------------ec----------------------------------
Confidence 99999987754211100 00
Q ss_pred ccccCCCceEEEEEcCCCc-EEEEEC--CCeEEEEcCC---CC--eeeEeecCCccEEEE--EEcCCEEEEEe-eCCeEE
Q 003217 414 GFGDDNRRTEALTTSIDGM-IWTGGA--NGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQ 482 (838)
Q Consensus 414 ~~~~~~~~v~ala~S~dg~-l~Sgs~--DgtIrlWD~~---g~--~l~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIr 482 (838)
...+...+..++++|||+ |+++.. +++|.+|++. |+ .+..+.. ...+.++ ++||++|++++ .++.|.
T Consensus 254 -~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 254 -DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp -CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred -CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 001112235688999998 655554 4899999983 44 4444443 3445555 45799999888 579999
Q ss_pred EEe--CC-Ccccccc-cccccCEEEEEe
Q 003217 483 VLD--LE-GNLLGGW-VAHSSPVIKMAV 506 (838)
Q Consensus 483 lWD--~~-g~~i~~l-~gH~~~V~sla~ 506 (838)
+|+ .+ |++.... ..|...+.||.+
T Consensus 332 v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 332 IFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 964 44 5543332 345566777764
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=1.7e-10 Score=122.91 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=139.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEE
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd 268 (838)
.....+++|+|+|+ ++|++..++.|.+|+..+ . ...+..+...+.+|+++++|+||.+. .++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34567899999998 899999999999999987 3 45566778889999999999976554 568999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-C---------------
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-L--------------- 332 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~--------------- 332 (838)
..+++....... ..+ .+...+..++.++++..+++... +
T Consensus 97 ~~~g~~~~~~~~----------------------~~~---~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 97 EPGGEWESIADS----------------------FEG---KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp STTCCEEEEECE----------------------ETT---EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCCcEEEEeec----------------------cCC---CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 865432111000 000 00112334566665543332110 1
Q ss_pred --cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 333 --SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 333 --tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
.|..+|.. +++ ..
T Consensus 152 ~~~l~~~~~~-g~~--------------------------------------------------------------~~-- 166 (296)
T 3e5z_A 152 GRWVFRLAPD-GTL--------------------------------------------------------------SA-- 166 (296)
T ss_dssp SCEEEEECTT-SCE--------------------------------------------------------------EE--
T ss_pred CcEEEEECCC-CCE--------------------------------------------------------------EE--
Confidence 11111111 110 00
Q ss_pred ccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC--CCe---eeEeecCCccEEEEEEc--CCEEEEEeeCCeEE
Q 003217 411 AKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNR---LQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~--g~~---l~tl~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (838)
+..+......++++|||. +++.+.++.|.+||+. |+. .+.+..+...+.+++.| |+ ||+++ ++.|.
T Consensus 167 ----~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~ 240 (296)
T 3e5z_A 167 ----PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVH 240 (296)
T ss_dssp ----EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEE
T ss_pred ----eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEE
Confidence 011223345688999997 5556667899999983 554 34443344455566664 54 66666 89999
Q ss_pred EEeCCCcccccccccccCEEEEEe---CCCEEEEEcCCC
Q 003217 483 VLDLEGNLLGGWVAHSSPVIKMAV---GAGYIFTLANHG 518 (838)
Q Consensus 483 lWD~~g~~i~~l~gH~~~V~sla~---dg~~l~S~S~Dg 518 (838)
+||.+|+++..+..+.. +.++++ +++.|+.++.++
T Consensus 241 ~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 241 VLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp EECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred EECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 99999988888888877 877765 456777777663
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.31 E-value=5.6e-11 Score=144.09 Aligned_cols=287 Identities=9% Similarity=-0.002 Sum_probs=166.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccccc-----EEEEEEecCCC-EEEeeCC-----
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-----VLSLCISSYGD-LWSGSEG----- 261 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~-----V~slafs~dG~-L~SgS~D----- 261 (838)
...+++|+|||++|+++ ||+|++||+.++ ++...+.+|... ..+++|||||+ |++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYG--------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTC--------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCC--------ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 45678999999999997 999999999997 455667777643 34578999998 7777776
Q ss_pred ----CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEE
Q 003217 262 ----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (838)
Q Consensus 262 ----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lW 337 (838)
+.+.+||+++++.. .+.. + ...+...+.+++|.+|+.+.+..|.+|
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~-------------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~ 137 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred EccceEEEEEECCCCcEE-Eccc-------------------C----------CCcceeeEECCCCCEEEEEECCeEEEE
Confidence 45569999875421 1111 0 234667788899998888888899999
Q ss_pred eccCccEEEEEecCCc---eEE----------------eeecccCccccc----ccc-eeeEEEecCCCC----cceeee
Q 003217 338 DARTRELLKVFNIDGQ---IEN----------------RVDMSLLPDFAM----EDE-FKTKIVTSSKKD----KAQSSF 389 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~---~~~----------------~~~~s~~~~~~~----~~~-~~~~~~s~~~~~----~~~~s~ 389 (838)
|+.+++..+ +..++. +.+ .+.++++....+ ++. ++.+.+...... .....+
T Consensus 138 ~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 138 IEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp SSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 999988644 222221 100 123343332211 111 111111000000 000011
Q ss_pred eEeecCcceeeecCCc---EEEEecc----C---c---c------ccCCCceEEEEEcCCCcE-EEEE----CCCeEEEE
Q 003217 390 GFFQRSRNAIMGAADA---VRRVAAK----G---G---F------GDDNRRTEALTTSIDGMI-WTGG----ANGLLLQW 445 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~---v~~v~~~----g---~---~------~~~~~~v~ala~S~dg~l-~Sgs----~DgtIrlW 445 (838)
.+.. .|..+. +..+... + . + ..+...+..+++||||++ +... .+..|++|
T Consensus 217 ~yp~------~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 217 PYPK------AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp ECCB------TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred cCCC------CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 1111 111111 1111111 1 0 1 125556788999999984 3332 23379999
Q ss_pred cC-CCC----eeeE--e--ecCCccEE-------EEEEcCCEEE-EEee-C--CeEEEEeCCCcccccccccccCEEEEE
Q 003217 446 DP-NGN----RLQD--F--QYLPFAVQ-------CLCTFGSQIW-VGYM-N--GIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 446 D~-~g~----~l~t--l--~~H~~~V~-------sls~dG~~La-sGs~-D--gtIrlWD~~g~~i~~l~gH~~~V~sla 505 (838)
|+ +|+ |... + .+|..+|. .+++||+.|+ ..+. + ..|.+||+.+.....++.....|..+.
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE
Confidence 99 677 4433 2 45665554 3467899776 6654 3 478899998766556665566677654
Q ss_pred -eCCCEEE-EEcC----CCCeeeeecC
Q 003217 506 -VGAGYIF-TLAN----HGGIRGWNVT 526 (838)
Q Consensus 506 -~dg~~l~-S~S~----DgtIrlWdl~ 526 (838)
+|++.++ +++. -+...+|.+.
T Consensus 371 ~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 371 ALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 7877665 4443 2445667654
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.31 E-value=1.9e-10 Score=136.79 Aligned_cols=103 Identities=15% Similarity=0.012 Sum_probs=69.7
Q ss_pred eEEEEEcCCCcE-EEEECCC--eEEEEcC-CCCeeeEeecCCcc--------EEEEEE--cCCEEEEEeeCCeEEEE--e
Q 003217 422 TEALTTSIDGMI-WTGGANG--LLLQWDP-NGNRLQDFQYLPFA--------VQCLCT--FGSQIWVGYMNGIVQVL--D 485 (838)
Q Consensus 422 v~ala~S~dg~l-~Sgs~Dg--tIrlWD~-~g~~l~tl~~H~~~--------V~sls~--dG~~LasGs~DgtIrlW--D 485 (838)
+..++++|||++ +++..++ .|.+||+ +|+..+...++... +.++++ +|+.+++++. ++++|| |
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 446778999985 5565677 6777787 55554433333322 344544 6788888888 999999 6
Q ss_pred CCCcccccccccccCEEEE-EeCCCEEE--EEcCCCCeeeeec
Q 003217 486 LEGNLLGGWVAHSSPVIKM-AVGAGYIF--TLANHGGIRGWNV 525 (838)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sl-a~dg~~l~--S~S~DgtIrlWdl 525 (838)
+++..++.+..|...|..+ +++++.++ +.+.+....+|.+
T Consensus 323 ~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 323 PESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp TTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 6665678888898888888 78777543 5566665566654
No 174
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.29 E-value=1.5e-10 Score=127.80 Aligned_cols=246 Identities=7% Similarity=0.002 Sum_probs=141.1
Q ss_pred cCCEEEEecCCCEEEEeCC-CCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC--EEEEEe-------
Q 003217 141 TEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG--VVWSGH------- 210 (838)
Q Consensus 141 ~~~~l~~g~d~~vrvWd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~--~LaSGs------- 210 (838)
+++.|+++..++|++||+. +...... ..... .+.+.+++++|+|+ ++++++
T Consensus 50 dg~~l~~~~~~~v~~~~~~~~g~~~~~-----------------~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 50 ERKNIYGAAMKKWSSFAVKSPTEIVHE-----------------ASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TSSEEEEEEBTEEEEEEEEETTEEEEE-----------------EEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred CCCEEEEEccceEEEEEECCCCCEEEe-----------------eEeec--CCCCccEEECCCCCEEEEEEecCCcceec
Confidence 4556777544499999986 4321100 00001 12345688999999 466664
Q ss_pred ------CCCcEEEEECCC-CccCCCCCcceeEEec----cccccEEEEEEecCCC-EEEee-CCCcEEEEECC-Ccceee
Q 003217 211 ------RDGRIMCWKMNA-RLLDSDDGFGEVLSWQ----AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWE-AIEKAL 276 (838)
Q Consensus 211 ------~DGtIrvWd~~~-g~~~~~~~~~~~~~l~----gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~-~~~~~~ 276 (838)
.+|++++|++.. + +....+. .|...+.+++|+|||+ |+++. .+++|++|+++ +++...
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETG--------KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp EEEESSSCCEEEEEEECTTC--------CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred cceeecCCceEEEEccCCCC--------cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 699999999974 3 2222222 2557899999999998 66554 46899999996 432110
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEecc--CccEEEEEecCC
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TRELLKVFNIDG 352 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~--tg~~l~~l~~~~ 352 (838)
. ..+ .+.. +....+.+++++++..++.+. +++|.+|+.. +|++...+..
T Consensus 183 ~--------~~~-------~~~~----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-- 235 (365)
T 1jof_A 183 V--------GSV-------DAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-- 235 (365)
T ss_dssp E--------EEE-------ECSS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE--
T ss_pred e--------eeE-------ecCC----------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce--
Confidence 0 000 0000 012366788888888887765 3678888764 5654211100
Q ss_pred ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE-EcCCC
Q 003217 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT-TSIDG 431 (838)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala-~S~dg 431 (838)
+...... ..++.. .+. ....+..++ ++|||
T Consensus 236 ------------------------~~~~~~~---------------~~g~~~---------~~~-~~~~~~~i~~~spdG 266 (365)
T 1jof_A 236 ------------------------FPLIPPG---------------IPDRDP---------ETG-KGLYRADVCALTFSG 266 (365)
T ss_dssp ------------------------EESSCTT---------------CCCBCT---------TTS-SBSEEEEEEEECTTS
T ss_pred ------------------------EEcCCCC---------------cCCccc---------ccc-cccccccEEEECCCC
Confidence 0000000 000000 000 001355788 99999
Q ss_pred c-EEEEEC-CC-----eEEEEcC--CCCeee---EeecCCccE--EEEEE---cCCEEEEEee-CCeEEEEeCCCc
Q 003217 432 M-IWTGGA-NG-----LLLQWDP--NGNRLQ---DFQYLPFAV--QCLCT---FGSQIWVGYM-NGIVQVLDLEGN 489 (838)
Q Consensus 432 ~-l~Sgs~-Dg-----tIrlWD~--~g~~l~---tl~~H~~~V--~sls~---dG~~LasGs~-DgtIrlWD~~g~ 489 (838)
+ |+++.. ++ +|++|++ +|+... .+..+...+ .++++ ||++|++++. +++|+||+++++
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 7 665543 23 8999998 365443 132233222 24678 7999999886 489999998754
No 175
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=4.3e-09 Score=128.27 Aligned_cols=355 Identities=15% Similarity=0.247 Sum_probs=209.9
Q ss_pred ceeEEEEecCC-EEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEE-QLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~g~d-~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+++|..+.+ .||+|++ ++|.++|..+....... .... .+.. ....+ ..+. .+.|.++..|++| .||.|+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~f-~~~~-~~~~~--~~l~-~~~v~~i~~D~~g-~lWigt 330 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE-QIRF-EFIR-EGDNN--YSLS-NASARYIFQDSFN-NIWIGT 330 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC----------C-EEEC-BCSST--TSBS-SSCEEEEEECSSC-CEEEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee-cccc-cccc-CCCCC--CCCC-CCeEEEEEEeCCC-CEEEEe
Confidence 45778888644 9999988 89999998653211100 0000 0000 00000 1233 5689999999876 589999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEE------ec-cccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCce
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLS------WQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~------l~-gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~ 283 (838)
.++-|..++..++. +..... -. -....|.+|+.+++|.||.|+.++.|.+|+..+.. +......
T Consensus 331 ~~~Gl~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~- 401 (781)
T 3v9f_A 331 WGGGINFISNAPPT------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKEN- 401 (781)
T ss_dssp BSSCEEEECSSCCS------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC----
T ss_pred cCCeEEEeCCCCCc------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCC-
Confidence 88888888876641 111100 00 02357999999999999999988889999975421 1111000
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
...+...+.+++.++ ...||.++. +++..+|..++++. .+.... ...
T Consensus 402 -----------------------~~~~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~-------~~~ 449 (781)
T 3v9f_A 402 -----------------------RELLSNSVLCSLKDS-EGNLWFGTYLGNISYYNTRLKKFQ-IIELEK-------NEL 449 (781)
T ss_dssp -------------------------CCCSBEEEEEECT-TSCEEEEETTEEEEEECSSSCEEE-ECCSTT-------TCC
T ss_pred -----------------------CCCCCcceEEEEECC-CCCEEEEeccCCEEEEcCCCCcEE-EeccCC-------CCC
Confidence 011244577777764 457888885 78999999887653 221100 000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Ccccc----C-----CCceEEEEEcCCCc
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD----D-----NRRTEALTTSIDGM 432 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~----~-----~~~v~ala~S~dg~ 432 (838)
..+. ++ +.+....+|+|+..|+.++... +.+.. . ...|.++..+++|.
T Consensus 450 -------~~v~--------------~i-~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 450 -------LDVR--------------VF-YEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp -------CCEE--------------EE-EECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred -------CeEE--------------EE-EECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 0000 00 0111234577777777777642 22211 1 35688899999999
Q ss_pred EEEEECCCeEEEEcCCCCeeeEeec----CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCccccccc----ccccCEEE
Q 003217 433 IWTGGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPVIK 503 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~tl~~----H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V~s 503 (838)
||.|+.++-|..+|..+..++.+.. ....|.++..|. ..||.|+.+|.|..||.++.....+. .....|.+
T Consensus 508 lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~ 587 (781)
T 3v9f_A 508 FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRA 587 (781)
T ss_dssp EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCE
T ss_pred EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEE
Confidence 9999974448889986555555542 245789998864 37898888665599998744333332 23356888
Q ss_pred EEeCCCEEEEEcCCCCeeeeecCC-----CCCCchhhhhhhhccccccccccceeeEEEEE
Q 003217 504 MAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTW 559 (838)
Q Consensus 504 la~dg~~l~S~S~DgtIrlWdl~s-----~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~tw 559 (838)
+..|.+..++.++++.|..++... +...+++...++..........+. +++++.
T Consensus 588 i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~ 646 (781)
T 3v9f_A 588 ISEDKNGNIWASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL--IYFGSI 646 (781)
T ss_dssp EEECSSSCEEEECSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC--EEEEET
T ss_pred EEECCCCCEEEEcCCceEEEECCCCceEEecccCCccccccccCceEECCCCE--EEEECC
Confidence 887765555566677788887543 333455554444433333333444 777773
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.28 E-value=7.5e-10 Score=120.40 Aligned_cols=206 Identities=11% Similarity=-0.024 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe---------ccccccEEEEEEec-CCCEE-Eee-
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---------QAHRGPVLSLCISS-YGDLW-SGS- 259 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l---------~gH~~~V~slafs~-dG~L~-SgS- 259 (838)
.....++++++|+++++.+.++.|++|+.++.. ..+..+ .+|-....+|+|+| +|.|+ +.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 467889999999999999999999999987631 133444 35556789999999 78865 555
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEE
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALW 337 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lW 337 (838)
.++.|++|+.+. .....+.. .+.........-.....+++++++..|+.+. ...|++|
T Consensus 164 ~~~~I~~~~~~g-~~~~~~~~-------------------~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 164 CNSRIVQFSPSG-KFVTQWGE-------------------ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp SCCEEEEECTTS-CEEEEECE-------------------ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEcCCC-CEEEEecc-------------------CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 589999999643 21111100 0000000000012345677877755565554 4679999
Q ss_pred eccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcccc
Q 003217 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (838)
|..+|+++.++.....-
T Consensus 224 ~~~~G~~~~~~~~~~~~--------------------------------------------------------------- 240 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFG--------------------------------------------------------------- 240 (329)
T ss_dssp ETTTCCEEEEECCTTTT---------------------------------------------------------------
T ss_pred ECCCCcEEEEEeccccC---------------------------------------------------------------
Confidence 99999987766321100
Q ss_pred CCCceEEEEEcC------CCcE-EEEECCCeEEEEcC-CCCeeeEee---cCCccEEEEEE--cCCEEEEEeeCCeEEEE
Q 003217 418 DNRRTEALTTSI------DGMI-WTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 418 ~~~~v~ala~S~------dg~l-~Sgs~DgtIrlWD~-~g~~l~tl~---~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (838)
..+.+++++| +|.+ ++.+.+.+|++||. +|+.+.++. ++......|++ +|..+++...++.|++|
T Consensus 241 --~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 --RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp --TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred --CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 0001112222 3332 23344568999998 799988874 67777888876 56555566678999999
Q ss_pred eCCCc
Q 003217 485 DLEGN 489 (838)
Q Consensus 485 D~~g~ 489 (838)
+++++
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98754
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.27 E-value=6.8e-10 Score=122.78 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=58.7
Q ss_pred EEEcCCCc-EEEEEC-----------CCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-C
Q 003217 425 LTTSIDGM-IWTGGA-----------NGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 425 la~S~dg~-l~Sgs~-----------DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g 488 (838)
+++++|+. ++.+.. .++|.+||+ +++.++++..+. +.++ ++||++|+++.. ++|.+||++ +
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 67888865 655432 347999999 789999998776 5665 458999998886 999999987 7
Q ss_pred --cccccccccccCEEEEEe
Q 003217 489 --NLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 489 --~~i~~l~gH~~~V~sla~ 506 (838)
++++++..+......+++
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEE
T ss_pred cceeeEEeccCCCCcEEEEe
Confidence 777776555555566553
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.25 E-value=5e-10 Score=123.18 Aligned_cols=289 Identities=9% Similarity=-0.027 Sum_probs=147.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccccc-EEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGP-VLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~D-G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~-V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
.+.+++|+|||++|+....+ | .|.+||+.++ + ...+..+... +..++|+|||+ |+.++.++.|.+|
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--------~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--------Q-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--------E-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--------c-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 35667899999998776543 3 6788898886 3 3333333333 33478999998 7788888999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE------eCCCcEEEEeccC
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS------AGFLSFALWDART 341 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s------~s~~tI~lWD~~t 341 (838)
++.+++............. ....+............ ......++++..++. .....|.+||+.+
T Consensus 108 d~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 108 DLETLEEQVIYTVDEEWKG----YGTWVANSDCTKLVGIE------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp ETTTCCEEEEEECCTTEEE----EEEEEECTTSSEEEEEE------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred ECCCCCcEEEEecccccCC----CCCEEEeccCCcccccc------ccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 9977543221111111000 00000000000000000 000011233332222 1234788999999
Q ss_pred ccEEEEEecCCceEEeeeccc-CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC----ccc
Q 003217 342 RELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----GFG 416 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g----~~~ 416 (838)
++.......... ...+.+++ ... ++........... ...++.+...+ .+.
T Consensus 178 g~~~~~~~~~~~-~~~~~~sp~dg~-------~l~~~~~~~~~~~-----------------~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 178 GELEVIHQDTAW-LGHPIYRPFDDS-------TVGFCHEGPHDLV-----------------DARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp CCEEEEEEESSC-EEEEEEETTEEE-------EEEEEECSCSSSC-----------------SCCCEEEETTSCCCEESS
T ss_pred CcEEeeccCCcc-cccceECCCCCC-------EEEEEecCCCCCC-----------------CceEEEEECCCCceeEee
Confidence 887655432221 12222222 110 0111110000000 00112221111 111
Q ss_pred cC--CCceEEEEEcCCCc-EEEEECC-----CeEEEEcC-CCCeeeEeecCCccEEEEEE-cCCEEEEEe----------
Q 003217 417 DD--NRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGY---------- 476 (838)
Q Consensus 417 ~~--~~~v~ala~S~dg~-l~Sgs~D-----gtIrlWD~-~g~~l~tl~~H~~~V~sls~-dG~~LasGs---------- 476 (838)
.+ ...+..++++|||+ |+.++.+ +.|.+||+ +|+........ .....+++ ||++|++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC-------
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeeccc
Confidence 11 22466789999997 6666543 45999999 56543322211 11145567 999888754
Q ss_pred ------eCCeEEEEeCCCcccccccccccC-----------EE--EEEeCCCEEEEEc-CCCCeeeeecC
Q 003217 477 ------MNGIVQVLDLEGNLLGGWVAHSSP-----------VI--KMAVGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 477 ------~DgtIrlWD~~g~~i~~l~gH~~~-----------V~--sla~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
.+..|.+||+++..+..+..|... +. ++.+||+.|+.++ .++...+|.+.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 247899999985444556666542 32 3346888887665 46777788764
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.23 E-value=5.1e-10 Score=123.83 Aligned_cols=268 Identities=9% Similarity=0.089 Sum_probs=150.6
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee----------CCCcE
Q 003217 202 ASGVVWSGH------RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (838)
Q Consensus 202 dg~~LaSGs------~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtI 264 (838)
+++.++... .|++|.+||..++ +...++..+..+ .++|+|||+ |++++ .|++|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 445555543 4789999999887 556667777666 899999998 66654 36789
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccC
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDART 341 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~t 341 (838)
.+||..+.+..-.+..... + ... ......+++++++..++.+. +++|.+||+.+
T Consensus 84 ~v~d~~t~~~~~~i~~~~~----------------~-~~~------g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~ 140 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPK----------------R-VQG------LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK 140 (361)
T ss_dssp EEEETTTCCEEEEEEECTT----------------B-CCB------CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred EEEECcCCcEEEEEEcCcc----------------c-ccc------CCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence 9999876443221110000 0 000 01223466778888888764 36899999999
Q ss_pred ccEEEE-EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec-CCc-EE-EEeccCcccc
Q 003217 342 RELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADA-VR-RVAAKGGFGD 417 (838)
Q Consensus 342 g~~l~~-l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~-v~-~v~~~g~~~~ 417 (838)
++.+.. +...+... +.+.+.... + . +.+.+++...+... .++ +. .......+..
T Consensus 141 ~~~~~~~i~~~~~~~--v~~~p~~~~------~--~------------~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 141 GDYVEDVTAAAGCWS--VIPQPNRPR------S--F------------MTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp TEEEEEEGGGTTEEE--EEECTTSSS------E--E------------EEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred CcEEEEEecCCCcce--eEEcCCCCe------e--E------------EEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 998877 54332210 011111000 0 0 00111111111100 000 00 0000000111
Q ss_pred CCCceEEEEEcCCC-cEEEEECCCeEEEEcCCC-C--eeeEeec------------CCccEEEEEEcCCEEEEEee----
Q 003217 418 DNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG-N--RLQDFQY------------LPFAVQCLCTFGSQIWVGYM---- 477 (838)
Q Consensus 418 ~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~g-~--~l~tl~~------------H~~~V~sls~dG~~LasGs~---- 477 (838)
....+ .+.+++++ .++..+.+++|.+||..+ . .+.++.. .......+.++|++++++..
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 11111 12234555 366667788999999843 2 2222211 11112456778898888654
Q ss_pred -------CCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCC
Q 003217 478 -------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 478 -------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+++|.+||++ ++.+.++..|. +++|+ +||++|++++. ++|.+||..+.
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999987 67888888877 77766 58999998887 99999998764
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.23 E-value=3.2e-09 Score=115.07 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=66.2
Q ss_pred cCCCc-EEEEECC--------CeEEEEcCCCCeeeEeecCCccEEE-EEE-cCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 428 SIDGM-IWTGGAN--------GLLLQWDPNGNRLQDFQYLPFAVQC-LCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 428 S~dg~-l~Sgs~D--------gtIrlWD~~g~~l~tl~~H~~~V~s-ls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+|||+ |+.++.+ ..|.+|| +|+....+..|...|.. +.+ || .+++++.++.++|| +. |+. ..+.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~-~~~~ 298 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEI-KPIA 298 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence 56665 5555533 3688888 77665555566777775 544 56 88888999999999 76 554 3444
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCe-eeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtI-rlWdl~ 526 (838)
.+...|.++++++..+++++.+++. ++|.+.
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 5577888888766666777777765 888864
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.22 E-value=5e-08 Score=102.59 Aligned_cols=266 Identities=11% Similarity=0.093 Sum_probs=161.2
Q ss_pred eeEEEEecCC-EEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCTEE-QLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~~~-~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.|+.+.+ .+|++. ++.|.+||.. ..... +..... ...+.+++++++|.+.++..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~------------------~~~~~~-~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE------------------YPLPTP-DAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE------------------EECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE------------------ecCCcc-cCceeeEEECCCCCEEEeCC
Confidence 4567777644 788865 5689999976 22110 000011 34688999999998777766
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe-eCCCcEEEEECCCccee-eecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~~~~~~-~~~~~~~~~~~~~ 288 (838)
.++.|..|+..+. .....+..+...+.+|+++++|+||.+ ..++.|.+||. ++... +....
T Consensus 76 ~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-------- 138 (299)
T 2z2n_A 76 AANKIGRITKKGI--------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN-------- 138 (299)
T ss_dssp TTTEEEEECTTSC--------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------
T ss_pred CCCeEEEECCCCc--------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------
Confidence 7889999998632 122222334567899999999998654 56789999987 32211 11000
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.......++.++++ .+|.+. .+.|..||. +++.... ...
T Consensus 139 ---------------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~-~~~--------------- 179 (299)
T 2z2n_A 139 ---------------------KGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEF-KIP--------------- 179 (299)
T ss_dssp ---------------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE-ECS---------------
T ss_pred ---------------------CCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEe-eCC---------------
Confidence 01234566776655 455543 357888887 6654221 000
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtIrlW 445 (838)
.....+..++++++|.+|.+. .++.|.+|
T Consensus 180 --------------------------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 180 --------------------------------------------------TPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp --------------------------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred --------------------------------------------------CCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 001123467788888888776 36789999
Q ss_pred cCCCCeeeE-eecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCCCcccc-cccccccCEEEEEe-CCCEEEEEcCCCCe
Q 003217 446 DPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPVIKMAV-GAGYIFTLANHGGI 520 (838)
Q Consensus 446 D~~g~~l~t-l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V~sla~-dg~~l~S~S~DgtI 520 (838)
|.+++.... +..+...+.+++.+.. .||++. .++.|.+||.+++... .+..+...+.+++. +++..++.+ .+.|
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l 288 (299)
T 2z2n_A 210 TTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKI 288 (299)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEE
T ss_pred CCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCcE
Confidence 996654322 2234567888877522 466665 5789999998765322 13345567887775 444444444 4556
Q ss_pred eeeecC
Q 003217 521 RGWNVT 526 (838)
Q Consensus 521 rlWdl~ 526 (838)
..++..
T Consensus 289 ~~~~~~ 294 (299)
T 2z2n_A 289 GKLTLI 294 (299)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 666643
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.22 E-value=9e-09 Score=108.63 Aligned_cols=231 Identities=7% Similarity=0.069 Sum_probs=139.3
Q ss_pred EEEecC-CEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc-CCCCEEEEEeC-
Q 003217 137 TIVCTE-EQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHR- 211 (838)
Q Consensus 137 ~l~~~~-~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s-~dg~~LaSGs~- 211 (838)
.++.+. ..+|++ .++.|++||.+.. .... . +.....+ .+ ...+.+++++ ++++++++...
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~-----~----~~~~~~~----~~-~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQ-----F----GECGKRD----SQ-LLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSC-EEEE-----E----CCBSSST----TC-BSSEEEEEEETTTTEEEEEECGG
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCc-EEEE-----e----cccCCCc----cc-ccCceEEEEEcCCCeEEEEcCCC
Confidence 444443 367764 4779999997532 1110 0 0000000 01 3467889994 66655555533
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCCEE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
++.|++|+..+ +....+. ++...+.+|+++++|+|+ +.+.++.|.+|+.+.. ....+..
T Consensus 99 ~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~--------- 159 (286)
T 1q7f_A 99 THQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGC--------- 159 (286)
T ss_dssp GCEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEEC---------
T ss_pred CCEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCC---------
Confidence 89999999543 3444443 345678999999999975 5567889999997431 1111100
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
..+ ......++.++++. +|.+. +..|++||.. ++.+..+..++
T Consensus 160 --------~~~----------~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g--------------- 204 (286)
T 1q7f_A 160 --------SKH----------LEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEG--------------- 204 (286)
T ss_dssp --------TTT----------CSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTT---------------
T ss_pred --------CCc----------cCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCC---------------
Confidence 000 12355677776655 55443 4689999873 44433331110
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCC-eEEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANG-LLLQW 445 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~Dg-tIrlW 445 (838)
+...+..++++++|.+|.+. .++ .|++|
T Consensus 205 --------------------------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 205 --------------------------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp --------------------------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred --------------------------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 01223467889999976655 454 89999
Q ss_pred cCCCCeeeEeecCCc--cEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 446 DPNGNRLQDFQYLPF--AVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 446 D~~g~~l~tl~~H~~--~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
|.+|+.+.++..+.. .+.+++. +|+ |++++.|++|++|+..
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 235 TQDGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYV 279 (286)
T ss_dssp CTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECS
T ss_pred CCCCCEEEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEcc
Confidence 999998888876543 3666665 565 5555779999999975
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.19 E-value=1.4e-08 Score=109.53 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CC----CcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EG----GGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~D----gtIr 265 (838)
...+.+++++++|++++++..++.|.+||.+++ +....+..+...|.+|+++++|+||.+. .+ +.|.
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCC--------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 345688999999998889999999999999876 2222233567889999999999976554 44 5899
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-------CcEEEEe
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-------LSFALWD 338 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-------~tI~lWD 338 (838)
+||.++......+.... ....+..++.++++..+++... ..|..+|
T Consensus 116 ~~d~~~~~~~~~~~~~~---------------------------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~ 168 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLS---------------------------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS 168 (333)
T ss_dssp EECTTSCSCEEEECSSS---------------------------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred EEeCCCCEEEEEEccCc---------------------------cCCcccceEECCCCCEEEEeccccccCCCceEEEEe
Confidence 99987643211010000 0123556677766543333221 1233334
Q ss_pred ccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccC
Q 003217 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (838)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (838)
..++++.... ..
T Consensus 169 ~~~~~~~~~~--------------------------------------------------------------------~~ 180 (333)
T 2dg1_A 169 PDFRTVTPII--------------------------------------------------------------------QN 180 (333)
T ss_dssp TTSCCEEEEE--------------------------------------------------------------------EE
T ss_pred CCCCEEEEee--------------------------------------------------------------------cC
Confidence 3333221100 00
Q ss_pred CCceEEEEEcCCCc-EEEE-ECCCeEEEEcC--CCCeeeEe--------ecCCccEEEEEEc--CCEEEEEeeCCeEEEE
Q 003217 419 NRRTEALTTSIDGM-IWTG-GANGLLLQWDP--NGNRLQDF--------QYLPFAVQCLCTF--GSQIWVGYMNGIVQVL 484 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sg-s~DgtIrlWD~--~g~~l~tl--------~~H~~~V~sls~d--G~~LasGs~DgtIrlW 484 (838)
...+..+++++||. |+.+ +.++.|.+||. +|+.+..+ .++ ..+..++.+ |...++...++.|.+|
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 01134577889986 6554 45788999998 35544322 122 356677764 5544444457899999
Q ss_pred eCCCccccccccccc------CEEEEEe--CCCEEEEEcCC
Q 003217 485 DLEGNLLGGWVAHSS------PVIKMAV--GAGYIFTLANH 517 (838)
Q Consensus 485 D~~g~~i~~l~gH~~------~V~sla~--dg~~l~S~S~D 517 (838)
|.+++.+..+..+.. .+.++++ |++.|+.++.+
T Consensus 260 d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 260 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 998877666654432 5677764 55566544444
No 184
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.16 E-value=5.6e-09 Score=126.48 Aligned_cols=105 Identities=11% Similarity=-0.010 Sum_probs=73.1
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC---------Cc
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---------GR 214 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D---------Gt 214 (838)
+++++.|++|++||+.+...... +. +. .+. .. ......+++||||+.|+.++.+ +.
T Consensus 29 ~~~~~~~~~i~~~~~~~~~~~~~-----~~---~~----~~~--~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 29 EYLYKQENNILVFNAEYGNSSVF-----LE---NS----TFD--EF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp EEEEEETTEEEEEETTTCCEEEE-----EC---TT----TTT--TC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEEEEcCCcEEEEECCCCceEEE-----Ee---ch----hhh--hh-cccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 44444499999999977543211 00 00 000 00 1122347899999999999987 45
Q ss_pred EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 215 IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
+.+||+.++ ....+.+|.+.+..++|||||+ |+.+ .|+.|.+|++.++.
T Consensus 94 ~~~~d~~~~---------~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 94 YDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred EEEEECCCC---------cEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 569999996 3445778888999999999998 7766 46899999997754
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.13 E-value=2.1e-09 Score=115.99 Aligned_cols=228 Identities=10% Similarity=0.008 Sum_probs=146.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEE-EeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~ 270 (838)
..|.+++|++++..+++.+.++.++.|. . +....+.+|...+.+++|+++|+|| +++.++.|.+||.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT--A---------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE--C---------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCcccc--c---------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 4577888998888888888899999992 2 3455667777788999999999975 78889999999987
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-----CcEEEEeccCccEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELL 345 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-----~tI~lWD~~tg~~l 345 (838)
+++....... ....+..++.++++..+++... ..|.+||..++.+.
T Consensus 75 ~~~~~~~~~~-----------------------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 75 TKEIKRPFVS-----------------------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp TCCEEEEEEC-----------------------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCcEEEEeeC-----------------------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 6432110000 0234667777776654444333 36888888776542
Q ss_pred EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEE
Q 003217 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (838)
..+... .....+..+
T Consensus 126 ~~~~~~-----------------------------------------------------------------~~~~~~~~i 140 (333)
T 2dg1_A 126 DIIEDL-----------------------------------------------------------------STAYCIDDM 140 (333)
T ss_dssp EEECSS-----------------------------------------------------------------SSCCCEEEE
T ss_pred EEEccC-----------------------------------------------------------------ccCCcccce
Confidence 221100 001234567
Q ss_pred EEcCCCcEEEEECC-------CeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEe-eCCeEEEEeCC--Cccccc
Q 003217 426 TTSIDGMIWTGGAN-------GLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE--GNLLGG 493 (838)
Q Consensus 426 a~S~dg~l~Sgs~D-------gtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~--g~~i~~ 493 (838)
+++++|.+|.++.. +.|..||.++..+..+..+...+..+++ +|++|+.+. .++.|.+||+. ++.+..
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 88899998877653 4577777754334444333345666654 677776654 57899999984 443321
Q ss_pred --------ccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 494 --------WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 494 --------l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
+.+| ..+..|+. +|+..++...++.|.+|+.
T Consensus 221 ~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 221 FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 2222 35666775 5666666667889999985
No 186
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.13 E-value=9.4e-08 Score=116.64 Aligned_cols=319 Identities=13% Similarity=0.219 Sum_probs=193.7
Q ss_pred ceeEEEEec-CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCT-EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~-~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+++|..+ .+.||+++ +++|.+||..+...... .. ....+ ..+. ...|.|+..|++| .||.|+
T Consensus 215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~d~~g-~lWigt 280 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNY--------LH--SPSNP--KSIS-SNYIRSLAMDSQN-RLWIGT 280 (795)
T ss_dssp CCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEE--------CC--CTTCT--TSCS-CSBEEEEEECTTS-CEEEEE
T ss_pred CeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEe--------ec--CCCCc--cccC-CCeEEEEEEcCCC-CEEEEe
Confidence 356677765 55999987 56999999865321110 00 00001 1122 5679999999776 478888
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec--------cccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
.+| +.+|+..++ ....+. -....|.+|..+++|.||.|+.++.|..|+..+..... +...
T Consensus 281 ~~G-l~~~~~~~~---------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~- 348 (795)
T 4a2l_A 281 FND-LNIYHEGTD---------SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKN-IRNI- 348 (795)
T ss_dssp SSC-EEEEETTTT---------EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEE-ECCC-
T ss_pred CCh-hheEcCCCC---------eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceE-EcCC-
Confidence 775 678888764 122221 12367999999999999999999999999875432110 0000
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
.....++...|.+++.+. .+.||.|++ +++..||..++++.......... ...++
T Consensus 349 ---------------------~~~~~l~~~~V~~i~~d~-~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~--~~~l~ 404 (795)
T 4a2l_A 349 ---------------------PYKNSLSDNVVSCIVEDK-DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDES--ARGIG 404 (795)
T ss_dssp ---------------------TTSSSCSCSSEEEEEECT-TSCEEEEESSSCEEEECTTTCCEEEECCC--------CCS
T ss_pred ---------------------CCCCCCCCCeeEEEEECC-CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCc--ccCCC
Confidence 000112245688888765 457898886 58999999988764322110000 00000
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcc-eeeecC-CcEEEEecc-Ccccc--------CCCceEEEEEcCC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGAA-DAVRRVAAK-GGFGD--------DNRRTEALTTSID 430 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~-~~~g~~-~~v~~v~~~-g~~~~--------~~~~v~ala~S~d 430 (838)
. ..+.++.. +.... +|+|+. .|+.++... +.+.. ....|.++..+++
T Consensus 405 ~---------------------~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 405 S---------------------NNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp C---------------------SCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred C---------------------ccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 0 00001111 11234 678875 677777642 22211 2356889999999
Q ss_pred CcEEEEECCCeEEEEcCCCCeeeEeec-------CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCcccccc-------c
Q 003217 431 GMIWTGGANGLLLQWDPNGNRLQDFQY-------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGW-------V 495 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~~g~~l~tl~~-------H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l-------~ 495 (838)
|.||.|+.+| |.+||........+.. +...|.++..|. ..||.|+. +.|.+||..+... .+ .
T Consensus 463 g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~ 539 (795)
T 4a2l_A 463 GNLWLGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSN 539 (795)
T ss_dssp SCEEEEESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCG
T ss_pred CCEEEEecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCC
Confidence 9999999865 8899985444343321 246799998874 37888887 6789999764322 22 2
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+...|.+|..|.+..++.++.+.|..||..
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~ 570 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTREGFYCFNEK 570 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEESSCEEEEETT
T ss_pred CCCCeeEEEEECCCCCEEEEeCCCceeECCC
Confidence 4567899999865544555555588888854
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=3.8e-08 Score=104.54 Aligned_cols=222 Identities=13% Similarity=0.101 Sum_probs=136.6
Q ss_pred cCC-EEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003217 141 TEE-QLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 141 ~~~-~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvW 218 (838)
+++ .+|++. +++|.+||.++. . .. +. .. ...+.+++++++|+++++.+.++.|.+|
T Consensus 38 ~g~~l~~~~~~~~~i~~~~~~~~-~-~~-----------------~~--~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 38 ARSAVIFSDVRQNRTWAWSDDGQ-L-SP-----------------EM--HP-SHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp GGTEEEEEEGGGTEEEEEETTSC-E-EE-----------------EE--SS-CSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCC-e-EE-----------------EE--CC-CCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 344 466654 679999998754 1 11 11 12 4578999999999988777778999999
Q ss_pred ECCCCccCCCCCcceeEEec---cc-cccEEEEEEecCCCEEE-----eeCC-----------CcEEEEECCCcceeeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQ---AH-RGPVLSLCISSYGDLWS-----GSEG-----------GGIKIWPWEAIEKALSL 278 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~---gH-~~~V~slafs~dG~L~S-----gS~D-----------gtIrvWd~~~~~~~~~~ 278 (838)
|..++ +...... +. ...+++++++|+|+||. |+.+ +.-+||.++.......+
T Consensus 96 d~~~g--------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 167 (296)
T 3e5z_A 96 REPGG--------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP 167 (296)
T ss_dssp CSTTC--------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE
T ss_pred cCCCC--------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe
Confidence 99775 2221111 11 23567899999999764 4311 12245544321110000
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc-CccE-E--EEEecCCc
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TREL-L--KVFNIDGQ 353 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~-tg~~-l--~~l~~~~~ 353 (838)
. .. ......++.++++..+++.+ ...|.+||+. +|++ . ..+
T Consensus 168 ~-------------------~~----------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~----- 213 (296)
T 3e5z_A 168 I-------------------RD----------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF----- 213 (296)
T ss_dssp E-------------------CC----------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-----
T ss_pred e-------------------cC----------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-----
Confidence 0 00 11234567777777665554 3678899886 4443 1 111
Q ss_pred eEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcE
Q 003217 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI 433 (838)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l 433 (838)
.. ....+..++++++|.|
T Consensus 214 -------------------------~~-------------------------------------~~~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 214 -------------------------TV-------------------------------------EPGKTDGLRVDAGGLI 231 (296)
T ss_dssp -------------------------CC-------------------------------------SSSCCCSEEEBTTSCE
T ss_pred -------------------------eC-------------------------------------CCCCCCeEEECCCCCE
Confidence 00 0011224678899999
Q ss_pred EEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCCCccc
Q 003217 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLL 491 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i 491 (838)
|.+. ++.|.+||.+|+.+..+..+.. +.++++ +++.||+++.++ |.-++.+.+.+
T Consensus 232 ~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 232 WASA-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEE-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEc-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 9888 7889999999999999988777 777765 567999988764 44456554433
No 188
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=1.7e-09 Score=116.12 Aligned_cols=303 Identities=12% Similarity=0.084 Sum_probs=178.3
Q ss_pred CCCccccCcee-EEEEec-CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC
Q 003217 125 PLRETQIGCFL-RTIVCT-EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE 201 (838)
Q Consensus 125 ~~~~~~~~~~~-~~l~~~-~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~ 201 (838)
++|....+..+ .+++.+ ++.+|+++ +++|..|| .+...... ..+. ...+.++++++
T Consensus 11 ~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~-~~~~~~~~~~~ 69 (330)
T 3hxj_A 11 IKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWF-------------------FKSG-EIIECRPSIGK 69 (330)
T ss_dssp -CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEES-------------------SCGG-GEEEECCEETT
T ss_pred EEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEE-------------------EecC-CCcccceEEec
Confidence 34444443322 233443 56899976 78999999 65443221 0011 33456778876
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
+| .||.|+.+ +..+|. ++ +....+..+.....+.++. +|.||.|+.++.|..+|.. +.........
T Consensus 70 ~g-~l~v~t~~--l~~~d~-~g--------~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 70 DG-TIYFGSDK--VYAINP-DG--------TEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp TT-EECCSSCE--EEEECC-CG--------GGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred CC-cEEEecCc--EEEECC-CC--------cEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 55 67777776 878886 43 2222222222223334444 7789999999999999986 4332221110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
...+..++..+ +..||.++. +.|..+|.. |+.+..+.......
T Consensus 136 -----------------------------~~~~~~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~----- 179 (330)
T 3hxj_A 136 -----------------------------KAIYATPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT----- 179 (330)
T ss_dssp -----------------------------SCCCSCCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC-----
T ss_pred -----------------------------CceeeeeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce-----
Confidence 00111223333 445777764 789999998 87765554221110
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc----ccCCCceEEEEEcCCCcEEEE
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTG 436 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~----~~~~~~v~ala~S~dg~l~Sg 436 (838)
.... ......+++++ .++..+...+.. ......+.+++.+++|.||.+
T Consensus 180 ---~~~~------------------------~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 180 ---SAAS------------------------IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp ---SCCE------------------------ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred ---eeeE------------------------EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence 0000 00112345555 555555532221 112234567788889999999
Q ss_pred ECCCeEEEEcCCCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe-CCCEEEEE
Q 003217 437 GANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTL 514 (838)
Q Consensus 437 s~DgtIrlWD~~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~ 514 (838)
+.++.|..+|.+|+.+..+......+.++..+ +..||+|+.+|.|..+|.+|+.+..+......+.++.. .+..++-+
T Consensus 232 t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 232 SLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFG 311 (330)
T ss_dssp ETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred cCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEE
Confidence 98888999998888777766544444445555 56899999999999999877766666555566777666 34467778
Q ss_pred cCCCCeeeeecC
Q 003217 515 ANHGGIRGWNVT 526 (838)
Q Consensus 515 S~DgtIrlWdl~ 526 (838)
+.+|.+++-...
T Consensus 312 t~~G~~~~~~~~ 323 (330)
T 3hxj_A 312 TRNGKFYALFNL 323 (330)
T ss_dssp CTTSCEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 889999886643
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.09 E-value=1.8e-08 Score=104.91 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=140.5
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~La-SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
...+++++++|++.+ +.+.++.|.+|+..+. ........+...+.+|+++++|+||.+..++.|.+||..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--------GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc--------ccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC
Confidence 677899999998666 4477899999997664 1111112344567899999999987655588999999865
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEe
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~ 349 (838)
.... .... .+ ......++.++++. +|.+. .+.|.+||..+......
T Consensus 97 ~~~~-~~~~-----------------------~~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 97 NNQT-VLPF-----------------------DG-----LNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp SCCE-ECCC-----------------------CS-----CSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred ceEe-eeec-----------------------CC-----cCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee--
Confidence 3211 0000 00 12345667766554 44432 34566665433211000
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
. ......+..+++++
T Consensus 145 -----------------------------~------------------------------------~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 145 -----------------------------P------------------------------------FTGLNDPDGVAVDN 159 (270)
T ss_dssp -----------------------------C------------------------------------CCSCCSCCCEEECT
T ss_pred -----------------------------c------------------------------------cccCCCceeEEEeC
Confidence 0 00001223577888
Q ss_pred CCcEEEEE-CCCeEEEEcCCCCeeeE-eecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCCCccccccc-ccccCEEEE
Q 003217 430 DGMIWTGG-ANGLLLQWDPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLEGNLLGGWV-AHSSPVIKM 504 (838)
Q Consensus 430 dg~l~Sgs-~DgtIrlWD~~g~~l~t-l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~g~~i~~l~-gH~~~V~sl 504 (838)
+|++|.+. .++.|.+||..+..... ...+...+.+|+.+.. .||++. .++.|.+||..+....... .+...+.+|
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 88887665 46789999996543332 2333466788877532 566555 5789999999865433322 344678888
Q ss_pred Ee--CCCEEEEEcCCCCeeeeecCC
Q 003217 505 AV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 505 a~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++ +|+..++.+.++.|+++++..
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC
Confidence 75 567777888999999998654
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.07 E-value=3.2e-08 Score=119.20 Aligned_cols=233 Identities=11% Similarity=-0.007 Sum_probs=138.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc---
Q 003217 193 SVMCMVGDEASGVVWSGHRDG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DG-----tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (838)
.+..++|||||++||.++.++ +|++||++++ +.......+ ..+.+++|+|||+ |+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--------~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCcccccC-cccceEEEEeCCCEEEEEEECCcccc
Confidence 578899999999998877654 8999999997 333221222 2367899999998 787777766
Q ss_pred -------------EEEEECCCccee--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE
Q 003217 264 -------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (838)
Q Consensus 264 -------------IrvWd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s 328 (838)
|++|++.+.... +.+.... + ......+..++++..|+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-----------------~----------~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-----------------E----------PKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCC-----------------C----------CeEEEEEEEcCCCCEEEE
Confidence 999999764321 1111100 0 011233445555554443
Q ss_pred eC------CCcEEEEeccC------cc-EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 329 AG------FLSFALWDART------RE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 329 ~s------~~tI~lWD~~t------g~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
.+ ...|.+||+.+ +. ..+.+..+.
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~------------------------------------------- 286 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF------------------------------------------- 286 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-------------------------------------------
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCC-------------------------------------------
Confidence 32 23577888765 32 111111100
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC----CCeEEEEcCC-CC--eeeEeecCCc--cEEEE
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPN-GN--RLQDFQYLPF--AVQCL 465 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~----DgtIrlWD~~-g~--~l~tl~~H~~--~V~sl 465 (838)
..+.. .+++||. |+..+. ++.|.+||+. ++ ..+++..|.. .|.++
T Consensus 287 ------------------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 287 ------------------------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp ------------------------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred ------------------------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 00011 1334443 444333 2368999984 43 3466666655 57667
Q ss_pred EEc-CC-EEEEEeeCCe--EEEEeC-CCcccccccccccCEEEEEe--CCCEEE-E---EcCCCCeeeeecCCCC
Q 003217 466 CTF-GS-QIWVGYMNGI--VQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIF-T---LANHGGIRGWNVTSPG 529 (838)
Q Consensus 466 s~d-G~-~LasGs~Dgt--IrlWD~-~g~~i~~l~gH~~~V~sla~--dg~~l~-S---~S~DgtIrlWdl~s~~ 529 (838)
++. +. .+++...|+. |++||+ .|+.++.+..|.+.|.++.. +++.++ + ..+.++|.+||+.+..
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 653 44 6666667774 566787 57777778888777888874 565554 3 3356789999987644
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.07 E-value=2.9e-08 Score=107.91 Aligned_cols=257 Identities=11% Similarity=-0.023 Sum_probs=153.7
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003217 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (838)
Q Consensus 150 d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~ 229 (838)
+++|.+||.++...... . . .+ .+..+ + ......++++ ++++.++...+++|.+||..++
T Consensus 16 ~~~l~~~d~~t~~~~~~-i---~---~~-~n~~~----l--g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~------ 74 (328)
T 3dsm_A 16 NATLSYYDPATCEVENE-V---F---YR-ANGFK----L--GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF------ 74 (328)
T ss_dssp CBEEEEEETTTTEEECS-H---H---HH-HHSSC----C--BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC------
T ss_pred CceEEEEECCCCEEhhh-h---H---hh-hcCcc----c--CccceEEEEE-CCEEEEEEcCCCEEEEEECccc------
Confidence 67999999986543211 0 0 00 00000 1 1235667775 4455555566799999999987
Q ss_pred CcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceee
Q 003217 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (838)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 308 (838)
+.+.++. .......|+++++|+|+.+. .+++|.+||..+.+....+..... .+.
T Consensus 75 --~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------------~~~------ 129 (328)
T 3dsm_A 75 --KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM----------------DME------ 129 (328)
T ss_dssp --CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------CTT------
T ss_pred --EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------ccc------
Confidence 4555554 34567899999999976555 899999999977542211110000 000
Q ss_pred eecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcc
Q 003217 309 ILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (838)
Q Consensus 309 ~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (838)
......++. .+.++|.+. +++|.++|+.++++++.+.....
T Consensus 130 --~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-------------------------------- 173 (328)
T 3dsm_A 130 --SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-------------------------------- 173 (328)
T ss_dssp --TCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC--------------------------------
T ss_pred --CCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC--------------------------------
Confidence 001112233 245566553 46899999999887655421100
Q ss_pred eeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECC-----------CeEEEEcC-CCCeee
Q 003217 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN-----------GLLLQWDP-NGNRLQ 453 (838)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~D-----------gtIrlWD~-~g~~l~ 453 (838)
...++++++|++|.++.. +.|.+||. +++.++
T Consensus 174 ------------------------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 174 ------------------------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp ------------------------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred ------------------------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 012456677777665542 68999999 577776
Q ss_pred EeecC-CccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc-c-ccccccCEEEEEeC---CCEEEEE----cCCCCe
Q 003217 454 DFQYL-PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-G-WVAHSSPVIKMAVG---AGYIFTL----ANHGGI 520 (838)
Q Consensus 454 tl~~H-~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~-~-l~gH~~~V~sla~d---g~~l~S~----S~DgtI 520 (838)
++... ......+++ +|++|+++.. +|.+||++ +++.. . +..+.....+|+.+ +...++. ..+++|
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 76532 234566665 5889988654 89999987 44432 1 22224567788764 3344555 568899
Q ss_pred eeeecC
Q 003217 521 RGWNVT 526 (838)
Q Consensus 521 rlWdl~ 526 (838)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999854
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.06 E-value=1e-08 Score=111.11 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=67.0
Q ss_pred eEEEEEcCCCcEEEEECC------C---eEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEeeC--------CeEEEE
Q 003217 422 TEALTTSIDGMIWTGGAN------G---LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--------GIVQVL 484 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~D------g---tIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~D--------gtIrlW 484 (838)
+..++++|||.+++++.+ . .|.++| +|+ ++.+..+ ..+.++++||++|+.++.+ ..|.+|
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 173 FSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp TCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred cccccCCCCeEEEEEecccccccccccccEEEeC-CCc-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 345677888833444433 1 345555 554 3445555 6677778899988877744 479999
Q ss_pred eCCCcccccccccccCEEE-EEe-CCCEEEEEcCCCCeeeeecC
Q 003217 485 DLEGNLLGGWVAHSSPVIK-MAV-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 485 D~~g~~i~~l~gH~~~V~s-la~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
| .++......+|...|.. +.+ |+ .+++++.|+.+++| +.
T Consensus 250 d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 250 D-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp C-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE
T ss_pred C-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec
Confidence 9 66665555677777775 665 44 77899999999999 86
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.06 E-value=2.9e-07 Score=96.67 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=143.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (838)
...+.+++++++|++.++...++.|.+||.. +. ........+...+.+|+++++|.||.+. .++.|..|+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3578999999998866655558899999988 42 1122223455789999999999987554 4788999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~ 347 (838)
+.....+.... .......++.++++ .+|.+. .+.|.+||. +++....
T Consensus 86 ~g~~~~~~~~~-----------------------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~ 134 (299)
T 2z2n_A 86 KGIIKEYTLPN-----------------------------PDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY 134 (299)
T ss_dssp TSCEEEEECSS-----------------------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCcEEEEeCCC-----------------------------cCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe
Confidence 52111111000 02235567776655 455443 357888887 5543211
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
. . ......+..+++
T Consensus 135 ~-~-----------------------------------------------------------------~~~~~~~~~i~~ 148 (299)
T 2z2n_A 135 E-L-----------------------------------------------------------------PNKGSYPSFITL 148 (299)
T ss_dssp E-C-----------------------------------------------------------------SSTTCCEEEEEE
T ss_pred c-C-----------------------------------------------------------------CCCCCCCceEEE
Confidence 0 0 000112446778
Q ss_pred cCCCcEEEEEC-CCeEEEEcCCCCeeeE-eecCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccc-cccccccCE
Q 003217 428 SIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPV 501 (838)
Q Consensus 428 S~dg~l~Sgs~-DgtIrlWD~~g~~l~t-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V 501 (838)
+++|.+|.+.. ++.|.+||.+|+.... +..+...+.+++.+ |. ||.++ .++.|.+||.+++... ....+...+
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSGEITEFKIPTPNARP 227 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCCEEEEECSSTTCCE
T ss_pred cCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCCcEEEEECCCCCCCc
Confidence 88999887664 5789999997665432 23345567788775 55 55555 4789999999655422 233455778
Q ss_pred EEEEeC--CCEEEEEcCCCCeeeeec
Q 003217 502 IKMAVG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~d--g~~l~S~S~DgtIrlWdl 525 (838)
.+|+.+ |+..++...++.|.+|+.
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eeEEECCCCCEEEeccCCceEEEECC
Confidence 888864 554455557788999885
No 194
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.6e-07 Score=112.49 Aligned_cols=323 Identities=12% Similarity=0.192 Sum_probs=195.5
Q ss_pred CceeEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 132 GCFLRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 132 ~~~~~~l~~~~~-~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
+..+.+|.++.+ .||+|++.+|..+|-.+...... ....... .++. .+.|.++..+++|..||.|+
T Consensus 18 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~f~~~~~----------~~~~~~~--~~l~-~n~I~~i~~d~~g~~lWigt 84 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLWFATEEGLNKFDGTRFITYYK----------EEQSSSV--QSIT-GNELNEVYTDPVQPVIWIAT 84 (781)
T ss_dssp CSBEEEEEECTTSCEEEEESSCEEEECSSSEEEECC----------CSSCSSS--CCCS-CSCEEEEEECSSSSEEEEEE
T ss_pred cCEeEEEEECCCCCEEEccCCcCccccCCceEEEEc----------CCCCCcc--cccc-ccccceEEEcCCCCEEEEEe
Confidence 457889998865 99999999999999654322110 0000000 0233 56799999998877689999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec-----c---ccccEEEEEEec--CCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ-----A---HRGPVLSLCISS--YGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~-----g---H~~~V~slafs~--dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
.++-+-.||..++. ...+. . ....|.+|+.++ +|.||.|+.++.|..++..+.... .+..
T Consensus 85 ~~~Gl~~~d~~~~~---------f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~-~~~~ 154 (781)
T 3v9f_A 85 QRAGLNAYNYETQS---------FSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFT-HYNK 154 (781)
T ss_dssp SSSCEEEEETTTTE---------EEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEE-EEST
T ss_pred CCCCcceECCCCCe---------EEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEE-eecc
Confidence 98557789987741 22221 1 124699999998 899999886667888887543211 0100
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-cEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
.. .. ..+...+.+++.+. ...||.++.. ++..+|..++++.. +...... ...
T Consensus 155 ~~--------------------~~---~l~~~~i~~i~~d~-~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~--~~~ 207 (781)
T 3v9f_A 155 ST--------------------VP---ALPSEQTWTATEAE-DGKLYIGHVEGGLSILSLNDKSVKH-FVHDPQN--PNS 207 (781)
T ss_dssp TT--------------------CT---TCSCCCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEE-ECC---------
T ss_pred Cc--------------------cc---CCCccceEEEEECC-CCCEEEEecCCCeEEEcCCCCceEe-eecCCCC--ccc
Confidence 00 00 01133466666653 5678888754 89999998877532 2211000 000
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-cCcccc-----------CCCceEEEEE
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KGGFGD-----------DNRRTEALTT 427 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g~~~~-----------~~~~v~ala~ 427 (838)
++. ..+. ++ +.+....+|+|+..|+.++.. .+.+.. ....|.++..
T Consensus 208 l~~-------~~i~--------------~i-~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 265 (781)
T 3v9f_A 208 LPG-------NDVR--------------CI-YKDTNGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ 265 (781)
T ss_dssp -CC-------SSEE--------------EE-EECTTCCEEEEETTEEEEEETTTTEEEC-----------CCCCEEEEEE
T ss_pred CCC-------Ccee--------------EE-EEcCCCCEEEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEE
Confidence 000 0000 00 111223567787778777764 222211 1346888999
Q ss_pred cCCCcEEEEECCCeEEEEcCCCCeeeEee---------------cCCccEEEEEEcCC-EEEEEeeCCeEEEEeCCCccc
Q 003217 428 SIDGMIWTGGANGLLLQWDPNGNRLQDFQ---------------YLPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLL 491 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~---------------~H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i 491 (838)
+++|.||.|+..+-|.++|..+..+..+. .....|.++..|.. .||+|+.++.|..++......
T Consensus 266 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~ 345 (781)
T 3v9f_A 266 LKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF 345 (781)
T ss_dssp CTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC
T ss_pred CCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc
Confidence 99999999998455889998543222221 23567999988743 899999999999999874332
Q ss_pred ccc----------cccccCEEEEEeCCC-EEEEEcCCCCeeeeecC
Q 003217 492 GGW----------VAHSSPVIKMAVGAG-YIFTLANHGGIRGWNVT 526 (838)
Q Consensus 492 ~~l----------~gH~~~V~sla~dg~-~l~S~S~DgtIrlWdl~ 526 (838)
..+ ......|.+|..|.+ .|+-|+.++.|.+|+..
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG 391 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence 222 123467999998764 45555557889888854
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.06 E-value=6e-09 Score=125.26 Aligned_cols=232 Identities=5% Similarity=-0.078 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccE--EEEEEecCCC-EEEeeCCCc
Q 003217 192 SSVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--LSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 192 ~~V~~la~s~dg~~La-----SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V--~slafs~dG~-L~SgS~Dgt 263 (838)
..+.+++|||||++|| +|+.+.+|++||++++. ... ..|-..+ .+++|+|||+ |+.++.|.+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--------~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--------WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--------BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--------CcC--CcccCcccccceEEecCCCEEEEEEecCC
Confidence 3688999999999999 66667799999999972 210 1122222 6789999998 788888877
Q ss_pred -------------EEEEECCCcce--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE
Q 003217 264 -------------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (838)
Q Consensus 264 -------------IrvWd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s 328 (838)
|++|++.+... .+...... + ...+..+..++++..|+.
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-----------------D----------PTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-----------------C----------TTCEEEEEECTTSCCEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCC-----------------C----------CEEEEEEEECCCCCEEEE
Confidence 99999976432 11111000 0 112344555666655443
Q ss_pred eC-CC----cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC
Q 003217 329 AG-FL----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (838)
Q Consensus 329 ~s-~~----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~ 403 (838)
++ +. .|.+||..+++... +..+.
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~-l~~~~--------------------------------------------------- 271 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRL-LVKGV--------------------------------------------------- 271 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEE-EEECS---------------------------------------------------
T ss_pred EEeCCCCceEEEEEcCCCCceEE-eecCC---------------------------------------------------
Confidence 32 22 34555544443211 11000
Q ss_pred CcEEEEeccCccccCCCceEEEEEcCCCcEEEEE----CCCeEEEEcC-CCCe--eeEeecC--CccEEEEEEc-CCEEE
Q 003217 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG----ANGLLLQWDP-NGNR--LQDFQYL--PFAVQCLCTF-GSQIW 473 (838)
Q Consensus 404 ~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs----~DgtIrlWD~-~g~~--l~tl~~H--~~~V~sls~d-G~~La 473 (838)
..+....+ ++|.++..+ .++.|.+||+ +++. .+++..| ...|..+++. +..++
T Consensus 272 ----------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~ 334 (695)
T 2bkl_A 272 ----------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSL 334 (695)
T ss_dssp ----------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEE
T ss_pred ----------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEE
Confidence 00011122 223243333 2578999999 4543 3455544 4457777665 45777
Q ss_pred EEeeCCeEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeeecCCCC
Q 003217 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSPG 529 (838)
Q Consensus 474 sGs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrlWdl~s~~ 529 (838)
+...|+..+||. ++|+.++.+..| .+.|..++ ++++.++ |....++|.+||+.+..
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 778899888885 457766666666 55666665 4666666 45567889999987643
No 196
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.05 E-value=6e-09 Score=123.84 Aligned_cols=236 Identities=13% Similarity=-0.054 Sum_probs=139.8
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCccCCCCCcceeEEeccccccEE---------EEEEe--cCCC--E
Q 003217 191 VSSVMCMVGDEASGVVWSG--HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL---------SLCIS--SYGD--L 255 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSG--s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~---------slafs--~dG~--L 255 (838)
...|.++++++++-.++++ +.|+..++|....+ .....+.+|...|. +.+++ |||+ |
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 5689999999876556666 56889999996443 34556777766666 66565 9986 4
Q ss_pred EEee-CCCcEEEEECC--CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-
Q 003217 256 WSGS-EGGGIKIWPWE--AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF- 331 (838)
Q Consensus 256 ~SgS-~DgtIrvWd~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~- 331 (838)
+.++ .+..|.+|++. +......+...... .+ ...+..++.++++..|+.++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~--------------~~----------~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAV--------------GG----------GLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCS--------------TT----------CEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccC--------------CC----------CccccCcEECCCCCEEEEEEec
Confidence 4333 34555555554 10111222110000 00 112345667777877766552
Q ss_pred ----------CcEEEEeccC------ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 332 ----------LSFALWDART------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 332 ----------~tI~lWD~~t------g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
.+|.+||+.+ ++.. .+..
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~--------------------------------------------- 184 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSD--------------------------------------------- 184 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSC---------------------------------------------
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCcee-EEEe---------------------------------------------
Confidence 2577777765 3321 1100
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECC--------CeEEEEcCC--C---CeeeEeecCCcc
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN--------GLLLQWDPN--G---NRLQDFQYLPFA 461 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~D--------gtIrlWD~~--g---~~l~tl~~H~~~ 461 (838)
.+...+..+++||||+ |+.++.+ ..|++||++ | +..+...+|...
T Consensus 185 ---------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 185 ---------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA 243 (662)
T ss_dssp ---------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred ---------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence 0111223467889997 6666644 379999995 4 333444456778
Q ss_pred EEEEE--EcCCEEEEEeeCC--eEEEEeCC-CcccccccccccC--------EEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 462 VQCLC--TFGSQIWVGYMNG--IVQVLDLE-GNLLGGWVAHSSP--------VIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 462 V~sls--~dG~~LasGs~Dg--tIrlWD~~-g~~i~~l~gH~~~--------V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
+.++. +||+.+++++.++ .|.+||++ +++.....+|... +.+++ .+++.+++++. +++++|.+.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 88775 4789777877788 67777875 4444333333332 34455 37788889988 999999653
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.04 E-value=3.5e-08 Score=104.89 Aligned_cols=212 Identities=11% Similarity=0.048 Sum_probs=135.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
.+++|++++.|+.|.+||.++| +.+.++..|. ..+.+++++|+|+++. +.++.|..||. +++....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC
Confidence 4689999999999999999888 6677777765 4789999999999655 56788999998 5544333321
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRV 358 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (838)
.. ...+..+...+++..+++.+. ..+..+|. +|+.+..+......
T Consensus 74 ~~----------------------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---- 120 (276)
T 3no2_A 74 PA----------------------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---- 120 (276)
T ss_dssp CT----------------------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----
T ss_pred CC----------------------------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----
Confidence 10 001223334455655555432 34555664 56665554321100
Q ss_pred ecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE
Q 003217 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG 437 (838)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs 437 (838)
..+......+++.++|. +++.+
T Consensus 121 ---------------------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 121 ---------------------------------------------------------ERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ---------------------------------------------------------SSGGGSCSCCEECTTSCEEEEET
T ss_pred ---------------------------------------------------------CcccccccCceECCCCCEEEEec
Confidence 00000011233556776 56677
Q ss_pred CCCeEEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccccccc------cCEEEEE--e
Q 003217 438 ANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------SPVIKMA--V 506 (838)
Q Consensus 438 ~DgtIrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~------~~V~sla--~ 506 (838)
.++.|..||.+|+.+-++..+. .+.++. ++|..+++++.++.|..+|.+ |+.+-.+..+. ..+.++. .
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 7899999999999998887643 333443 367888888888899999998 88766654332 2256655 4
Q ss_pred CCCEEEEE
Q 003217 507 GAGYIFTL 514 (838)
Q Consensus 507 dg~~l~S~ 514 (838)
+|..+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 66666655
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.02 E-value=1e-07 Score=101.34 Aligned_cols=231 Identities=9% Similarity=0.025 Sum_probs=141.0
Q ss_pred CCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCccCCCCCcceeEEec-----cccccEEEEEEecC-CCEEEe
Q 003217 192 SSVMCMVGDEASGVVWS-------GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSY-GDLWSG 258 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaS-------Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~d-G~L~Sg 258 (838)
....+++++++|+++++ +..++.|.+||..++. ...+. +|...+.+++++++ |+||.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---------KTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---------EEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---------EEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 35678999999988777 6788999999987752 22222 36678999999999 888877
Q ss_pred eCCCcEEEEECCCcceeeec-CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------
Q 003217 259 SEGGGIKIWPWEAIEKALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------ 331 (838)
Q Consensus 259 S~DgtIrvWd~~~~~~~~~~-~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------ 331 (838)
+.++.|.+||.+ ++.. .+ .... .+ .+...+..++.++++. +|.+..
T Consensus 89 ~~~~~l~~~d~~-g~~~-~~~~~~~---------------------~~---~~~~~~~~i~~d~~g~-l~v~~~~~~~~~ 141 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFE-EIAKKDS---------------------EG---RRMQGCNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp ETTTEEEEEETT-SCEE-ECCSBCT---------------------TS---CBCBCCCEEEECTTSC-EEEEECBCBCTT
T ss_pred ECCCCEEEEeCC-CCEE-EEEeccC---------------------CC---ccccCCcCEEECCCCC-EEEEecCccccc
Confidence 666689999986 3321 11 1000 00 0012244566666553 443321
Q ss_pred -----------CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 332 -----------LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 332 -----------~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
..|..||.. +++....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------------------------------------------------- 168 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVD---------------------------------------------------- 168 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEE----------------------------------------------------
T ss_pred ccccccccCCCCeEEEECCC-CCEEEec----------------------------------------------------
Confidence 122222221 2111000
Q ss_pred ecCCcEEEEeccCccccCCCceEEEEEc----CCCc-EEEE-ECCCeEEEEcCC--CC-----eeeEeecCC-ccEEEEE
Q 003217 401 GAADAVRRVAAKGGFGDDNRRTEALTTS----IDGM-IWTG-GANGLLLQWDPN--GN-----RLQDFQYLP-FAVQCLC 466 (838)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~ala~S----~dg~-l~Sg-s~DgtIrlWD~~--g~-----~l~tl~~H~-~~V~sls 466 (838)
........++++ ++|. ++.+ ..++.|.+||.+ |+ ....+.++. ..+..++
T Consensus 169 ----------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 169 ----------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp ----------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred ----------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 000112356677 8884 6555 457889999973 43 233344443 5567777
Q ss_pred Ec--CCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeeecCC
Q 003217 467 TF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTS 527 (838)
Q Consensus 467 ~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrlWdl~s 527 (838)
.+ |...++...++.|.+||.+ ++.+..+..+...+.++++ +++.|+ +...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 64 5444444468899999998 7777777778788999885 666454 556678899998764
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.00 E-value=6e-08 Score=105.41 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=142.0
Q ss_pred ceeEEEEecCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
...+.++.+++.+|++. ++.|.+||.++...... + .+......++++++++ |+.+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~-----------------i----~~~~~p~~i~~~~~g~-lyv~~ 101 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR-----------------I----TGFTSPRYIHFLSDEK-AYVTQ 101 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE-----------------E----ECCSSEEEEEEEETTE-EEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE-----------------c----CCCCCCcEEEEeCCCe-EEEEE
Confidence 34566777888899843 57999999987554321 1 1133577899988885 55555
Q ss_pred -CCCcEEEEECCCCccCCCCCcceeEEecccc-----ccEEEEEEecCCCEEEee--CCCcEEEEECCCcceeeecCCCc
Q 003217 211 -RDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-----GPVLSLCISSYGDLWSGS--EGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 211 -~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-----~~V~slafs~dG~L~SgS--~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
.++.|.+||..++ +....+.... .....|++ .+++|+.+. .+++|.+||+++++....+...
T Consensus 102 ~~~~~v~~iD~~t~--------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 102 IWDYRIFIINPKTY--------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp BSCSEEEEEETTTT--------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred CCCCeEEEEECCCC--------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 8999999999986 3343443222 14456777 556676555 4899999999775422111100
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------------CcEEEEeccCccEEEEEec
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------------LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------------~tI~lWD~~tg~~l~~l~~ 350 (838)
.....++.++++. +|.+.. ..|.++|..++++.+.+..
T Consensus 172 -----------------------------~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 172 -----------------------------IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp -----------------------------SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 0011233444443 444332 4688888888776544321
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
.. ......++++||
T Consensus 222 ~~------------------------------------------------------------------g~~p~~la~~~d 235 (328)
T 3dsm_A 222 KL------------------------------------------------------------------GDWPSEVQLNGT 235 (328)
T ss_dssp CT------------------------------------------------------------------TCCCEEEEECTT
T ss_pred CC------------------------------------------------------------------CCCceeEEEecC
Confidence 00 012345778887
Q ss_pred Cc-EEEEECCCeEEEEcC-CCCeeeE--eecCCccEEEEEEc--CCEEEEEe-----eCCeEEEEeCCCccccccc
Q 003217 431 GM-IWTGGANGLLLQWDP-NGNRLQD--FQYLPFAVQCLCTF--GSQIWVGY-----MNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~-~g~~l~t--l~~H~~~V~sls~d--G~~LasGs-----~DgtIrlWD~~g~~i~~l~ 495 (838)
+. ++.+.. +|.+||. +++.... +..+......++.+ +.+|+++. .+++|.+||.+|+++.++.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 66 565543 7999999 5654321 22223566777763 55666664 5889999999988777664
No 200
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.98 E-value=1.3e-08 Score=111.97 Aligned_cols=73 Identities=8% Similarity=-0.121 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEE--EecCCCEEE-------------
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC--ISSYGDLWS------------- 257 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~sla--fs~dG~L~S------------- 257 (838)
.+.+++|+|||+.|+.++.++.|++||+.++ +....+..|.+.+.... +++||+++.
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATL--------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCC--------cceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 4446789999999999999999999999987 44455566666664443 489998443
Q ss_pred ----------eeCCCcEEEEECCCcc
Q 003217 258 ----------GSEGGGIKIWPWEAIE 273 (838)
Q Consensus 258 ----------gS~DgtIrvWd~~~~~ 273 (838)
.+.+..|.+||+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred ccchhhhhhccCCcceEEEEECCCCc
Confidence 2345789999987653
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.95 E-value=1.7e-06 Score=90.85 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=155.6
Q ss_pred eeEEEEecC-CEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCTE-EQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~~-~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.|+.+. ..+|++. ++.|.+||.. ...... ..... ...+.+++++++|++.++..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~-~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF------------------EVPTP-DAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE------------------ECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE------------------ECCCC-CCcceeEEECCCCCEEEEec
Confidence 345677664 4788864 5789999976 221100 00001 34688999999998777666
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEECCCccee-eecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~~~~~~-~~~~~~~~~~~~~ 288 (838)
.++.|..+|.. +. .....+..+...+.+|+++++|+||.+. .++.|..++.+ ++.. +.+..
T Consensus 81 ~~~~v~~~d~~-g~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------- 143 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN-------- 143 (300)
T ss_dssp TTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS--------
T ss_pred CCCeEEEECCC-CC-------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC--------
Confidence 68899999987 41 2222333344678999999999986544 47889999875 2211 11000
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.......++.++++. +|.+. ...|..+|. +++... +..
T Consensus 144 ---------------------~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------- 183 (300)
T 2qc5_A 144 ---------------------KGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPL---------------- 183 (300)
T ss_dssp ---------------------TTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EEC----------------
T ss_pred ---------------------CCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeC----------------
Confidence 012345667766655 55544 346777776 444321 100
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEEC-CCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-NGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~-DgtIrlW 445 (838)
......+..++++++|.+|.+.. .+.|.+|
T Consensus 184 -------------------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 184 -------------------------------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp -------------------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 00012234677888899887764 4579999
Q ss_pred cCCCCeeeE-eecCCccEEEEEEcCC-EEEEEee-CCeEEEEeCCCcccc-cccccccCEEEEEeC--CCEEEEEcCCCC
Q 003217 446 DPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGYM-NGIVQVLDLEGNLLG-GWVAHSSPVIKMAVG--AGYIFTLANHGG 519 (838)
Q Consensus 446 D~~g~~l~t-l~~H~~~V~sls~dG~-~LasGs~-DgtIrlWD~~g~~i~-~l~gH~~~V~sla~d--g~~l~S~S~Dgt 519 (838)
|.+|+.... +..+...+.+++.+.. .||+++. ++.|..||.+++... .+..+...+.+|+.+ |+..++ +.. .
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~-~ 292 (300)
T 2qc5_A 215 TTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFA-LKC-K 292 (300)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEE-CSS-E
T ss_pred cCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEE-ccC-c
Confidence 997765443 2334566788877522 4666664 689999998765432 223334557777764 443333 333 5
Q ss_pred eeeee
Q 003217 520 IRGWN 524 (838)
Q Consensus 520 IrlWd 524 (838)
|..++
T Consensus 293 i~~~~ 297 (300)
T 2qc5_A 293 IGKLN 297 (300)
T ss_dssp EEEEE
T ss_pred eEEeC
Confidence 55444
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.93 E-value=4.4e-07 Score=94.31 Aligned_cols=225 Identities=8% Similarity=0.015 Sum_probs=134.2
Q ss_pred EEEEecC-CEEEE-e--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 136 RTIVCTE-EQLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 136 ~~l~~~~-~~l~~-g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
..|+.+. +.||+ + .++.|++||..+..... .+ ..+...+.+++++++|+++++..
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----------------~~----~~~~~~p~~i~~~~~g~l~v~~~- 85 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----------------LP----FNGLYQPQGLAVDGAGTVYVTDF- 85 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EE----------------CC----CCSCCSCCCEEECTTCCEEEEET-
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccce----------------Ee----eCCcCCcceeEECCCCCEEEEcC-
Confidence 3556553 36887 5 46799999975432110 00 00123577899999988555555
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCCEE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
++.|.+||..+. ....+. .....+.+|+++++|+|| +.+.++.|.+|+..+.........
T Consensus 86 ~~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--------- 147 (270)
T 1rwi_B 86 NNRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT--------- 147 (270)
T ss_dssp TTEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------
T ss_pred CCEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------
Confidence 889999998774 222232 233678999999999976 445678999997643221110000
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+ ......++.++++. +|.+. .+.|.+||..++......
T Consensus 148 ---------------~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~------------------- 187 (270)
T 1rwi_B 148 ---------------G-----LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLP------------------- 187 (270)
T ss_dssp ---------------S-----CCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECC-------------------
T ss_pred ---------------c-----CCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeec-------------------
Confidence 0 01223456666554 55443 356788887654321100
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeEEEEc
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWD 446 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtIrlWD 446 (838)
......+..++++++|.+|.+. .++.|.+||
T Consensus 188 ------------------------------------------------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 188 ------------------------------------------------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp ------------------------------------------------CSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred ------------------------------------------------ccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 0001224467888999987766 467899999
Q ss_pred CCCCeeeEee-cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 447 PNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 447 ~~g~~l~tl~-~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
..+.....+. .+...+.+++. +|+.+++...++.|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 220 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp TTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 9765443333 33456788876 46655566679999999976
No 203
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.90 E-value=2.9e-07 Score=101.40 Aligned_cols=315 Identities=10% Similarity=0.088 Sum_probs=168.6
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeE-EEEEcCCCCEEEEEeCCCcEE
Q 003217 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVM-CMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 139 ~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~-~la~s~dg~~LaSGs~DGtIr 216 (838)
+..++.+|+++ ++.|..+|.+++...... .. +... .... .. ...+. .++. +++.|+.++.|+.+.
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~---~~----~~~~--~~~~-~~-~~~~~~~~~~--~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSV---SL----AEKD--GWFS-KE-PALLSGGVTV--SGGHVYIGSEKAQVY 116 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEE---EC----CC-----CCS-CC-CCCEEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeee---cC----cccc--cccc-cc-CcccccCceE--eCCEEEEEcCCCEEE
Confidence 34577888865 679999999876544320 00 0000 0000 00 11222 2333 357899999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
.+|..+| +.......+.....+.+. .++.++.++.++.|..+|..+++............ .
T Consensus 117 a~d~~tG--------~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~----------~ 177 (376)
T 3q7m_A 117 ALNTSDG--------TVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL----------S 177 (376)
T ss_dssp EEETTTC--------CEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------
T ss_pred EEECCCC--------CEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce----------e
Confidence 9999987 444333322211111222 35678899999999999998876554432211000 0
Q ss_pred cccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeE
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
.+.. .. .+.. +..|+.+. ++.+..+|+.+|+.+-.+....... ........+..
T Consensus 178 ~~~~----------~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~-------- 232 (376)
T 3q7m_A 178 LRGE----------SA----PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDVD-------- 232 (376)
T ss_dssp -CCC----------CC----CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCC--------
T ss_pred ecCC----------CC----cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-CcccccccccC--------
Confidence 0000 00 1111 34566665 4679999999999876654321100 00000000000
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecC-CcEEEEec-cCccc--cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCC
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~-~g~~~--~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~ 450 (838)
.. ... ....++++.. ..+..+.. .|... ........++. .++.++.++.++.|..+|. +|+
T Consensus 233 ---~~---------p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 233 ---TT---------PVV-VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ---CC---------CEE-ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETTEEEEEETTCCEEEEETTTCC
T ss_pred ---CC---------cEE-ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 00 000 0112233322 22333332 12111 11122233333 3678999999999999999 788
Q ss_pred eeeEee-cCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeeee
Q 003217 451 RLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 451 ~l~tl~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrlWd 524 (838)
.+-... .....+.+....+.+|++++.+|.|.++|.+ |+.+.....+...+.+ ....+..++.++.||.|..|+
T Consensus 299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 765554 2222333444567899999999999999986 7766555543333332 234567788899999998886
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.88 E-value=9.3e-08 Score=114.86 Aligned_cols=71 Identities=11% Similarity=-0.105 Sum_probs=51.4
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC
Q 003217 195 MCMVGDEASGVVWSGHRDGR-------------IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE 260 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGt-------------IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~ 260 (838)
..++|+|||+.|+.++.|.. |++|++.++.. ....+....+|...+.+++|||||+ |+.++.
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS----KDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----GCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----hceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence 56899999999999999887 99999988620 0012333445777899999999998 665554
Q ss_pred CC----cEEEEEC
Q 003217 261 GG----GIKIWPW 269 (838)
Q Consensus 261 Dg----tIrvWd~ 269 (838)
++ .|.+|+.
T Consensus 247 ~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 247 RGWSENDVYWKRP 259 (695)
T ss_dssp ETTTEEEEEEECT
T ss_pred CCCCceEEEEEcC
Confidence 44 4555544
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.87 E-value=2e-06 Score=100.84 Aligned_cols=271 Identities=12% Similarity=0.058 Sum_probs=157.0
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+++ ..++.|.++|.++...... +.....+.+++++|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~---------------------i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE---------------------EeCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 4554 3478999999977543221 1102256689999999999999999999999996
Q ss_pred --CCccCCCCCcceeEEeccccccEEEEEEe----cCCC-EE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 222 --ARLLDSDDGFGEVLSWQAHRGPVLSLCIS----SYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 222 --~g~~~~~~~~~~~~~l~gH~~~V~slafs----~dG~-L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
++ +...++....+ -..++|| |||+ ++ +...+++|.|+|..+.+....+...
T Consensus 227 ~~t~--------~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~------------ 285 (567)
T 1qks_A 227 MKEP--------TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR------------ 285 (567)
T ss_dssp SSSC--------CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC------------
T ss_pred CCCC--------cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc------------
Confidence 53 44455544333 4689999 6998 55 5556799999998775432211100
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (838)
+. ...+....+...+..+..++.+..++ +.. .+.|.++|..+.+.+++-.
T Consensus 286 -----~~-~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------------- 337 (567)
T 1qks_A 286 -----GM-TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------------- 337 (567)
T ss_dssp -----EE-CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----------------------
T ss_pred -----cc-ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----------------------
Confidence 00 00000011122344555555443322 222 2455566654433211100
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC-C
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-N 448 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~-~ 448 (838)
+ ........+.+++||+ +++++ .+++|.++|. +
T Consensus 338 -----i---------------------------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 338 -----I---------------------------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp -----E---------------------------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred -----e---------------------------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0 0001123466889987 44444 5778999999 6
Q ss_pred CCeeeEeec-----CCc-cEEEEEEcCCEEEEEe--eCCeEEEEeCCC--------cccccccccccC-E-EEEEeCCCE
Q 003217 449 GNRLQDFQY-----LPF-AVQCLCTFGSQIWVGY--MNGIVQVLDLEG--------NLLGGWVAHSSP-V-IKMAVGAGY 510 (838)
Q Consensus 449 g~~l~tl~~-----H~~-~V~sls~dG~~LasGs--~DgtIrlWD~~g--------~~i~~l~gH~~~-V-~sla~dg~~ 510 (838)
++.+..+.. |.+ .+.-+.+++..+|+.+ .+++|.++|... +.++++.+.... + ....+++++
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 776665543 543 3333455666676654 368999999752 345555543222 1 223467777
Q ss_pred EEEEcC-------CCCeeeeecCCC
Q 003217 511 IFTLAN-------HGGIRGWNVTSP 528 (838)
Q Consensus 511 l~S~S~-------DgtIrlWdl~s~ 528 (838)
++.... ..+|.++|+.+.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCcccCceEEEEECCcc
Confidence 775442 359999998765
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.83 E-value=7.1e-06 Score=85.97 Aligned_cols=229 Identities=13% Similarity=0.137 Sum_probs=141.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (838)
...+.+++++++|++.++...++.|.+||.. +. .....+..+...+.+|+++++|.||.+. .++.|.++|.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3468899999998877666678999999987 42 1122333445679999999999987554 4788999987
Q ss_pred CCccee-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEE
Q 003217 270 EAIEKA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~ 346 (838)
. ++.. +.... . ......++.++++. +|.+. .+.|..+|.. ++...
T Consensus 91 ~-g~~~~~~~~~-------------------~----------~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 91 K-GGFTEYPLPQ-------------------P----------DSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp T-SCEEEEECSS-------------------T----------TCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred C-CCeEEecCCC-------------------C----------CCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE
Confidence 5 2211 11000 0 12345666665554 44443 3467777765 44321
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+.. ......+..++
T Consensus 139 -~~~-----------------------------------------------------------------~~~~~~~~~i~ 152 (300)
T 2qc5_A 139 -YDL-----------------------------------------------------------------PNKGSYPAFIT 152 (300)
T ss_dssp -EEC-----------------------------------------------------------------SSTTCCEEEEE
T ss_pred -ccC-----------------------------------------------------------------CCCCCCceeEE
Confidence 100 00011234677
Q ss_pred EcCCCcEEEEEC-CCeEEEEcCCCCeeeE-eecCCccEEEEEEcC-CEEEEEe-eCCeEEEEeCCCcccc-cccccccCE
Q 003217 427 TSIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTFG-SQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPV 501 (838)
Q Consensus 427 ~S~dg~l~Sgs~-DgtIrlWD~~g~~l~t-l~~H~~~V~sls~dG-~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V 501 (838)
++++|.+|.+.. ++.|.++|.+++.... +..+...+.+++.+. ..||.+. ..+.|.+||..++... .+..+...+
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARP 232 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCE
T ss_pred ECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCc
Confidence 888898887764 6789999997765432 123445678887752 2566655 4678999999765433 233455678
Q ss_pred EEEEeC--CCEEEEEcCCCCeeeeec
Q 003217 502 IKMAVG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~d--g~~l~S~S~DgtIrlWdl 525 (838)
.+|+.+ |+..++...++.|..|+.
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECT
T ss_pred eEEEECCCCCEEEeccCCCeEEEECC
Confidence 888864 554455555788888875
No 207
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.82 E-value=5e-07 Score=108.68 Aligned_cols=93 Identities=5% Similarity=0.018 Sum_probs=65.5
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCc----------------E
Q 003217 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR----------------I 215 (838)
Q Consensus 152 ~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGt----------------I 215 (838)
.|++||+++..... ..+. ...+.+++|+|||+.|+.++.|+. |
T Consensus 152 ~i~v~d~~tg~~~~--------------------~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 152 TIKFMKVDGAKELP--------------------DVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp EEEEEETTTTEEEE--------------------EEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred EEEEEECCCCCCCc--------------------cccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence 89999997654321 1111 123667999999999999998876 9
Q ss_pred EEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EEEeeC-----CCcEEEEECCC
Q 003217 216 MCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSE-----GGGIKIWPWEA 271 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~-----DgtIrvWd~~~ 271 (838)
.+|++.++.. +....+ ..|...+.++.|||||+ |+.++. +..|.+||+.+
T Consensus 211 ~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 211 YYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 9999988620 112333 34667789999999998 654443 67899999865
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.80 E-value=2.1e-06 Score=91.04 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=52.6
Q ss_pred eEEEEEcCCCcEEEEE-CCCeEEEEcCC-CCeeeEeecCCccEEEEEE--cCCEEEEEee-CCeEEEEeCC
Q 003217 422 TEALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs-~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~ 487 (838)
+..++++++|.+|.+. .++.|.+||.+ |+.+..+..+...+.++++ +|++||+++. ++.|..||++
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3457888999987765 67889999995 8888888877788888876 6777887664 6799999976
No 209
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.80 E-value=2.3e-07 Score=99.46 Aligned_cols=256 Identities=11% Similarity=0.081 Sum_probs=152.4
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+.++..+ ++.+|+++++ |..+|. +...... . + .. .....+.++. ++.||.|+.+
T Consensus 61 ~~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~------------~---~----~~-~~~~~~~~~~--~~~l~v~t~~ 116 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWR------------F---D----TK-KAIVSDFTIF--EDILYVTSMD 116 (330)
T ss_dssp EEECCEETTTTEECCSSCE-EEEECC-CGGGGGG------------S---C----C------CCEEEE--TTEEEEECTT
T ss_pred cccceEEecCCcEEEecCc-EEEECC-CCcEEEE------------E---E----CC-CCcccCceEE--CCEEEEEecC
Confidence 34566665 5699998877 888885 3322211 0 0 00 1111112222 5789999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
+.+..+|.. + +.......+...+.++++.++|.||.|+.++.|..+|.. ++........
T Consensus 117 ~~l~~~d~~-g--------~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~----------- 175 (330)
T 3hxj_A 117 GHLYAINTD-G--------TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTN----------- 175 (330)
T ss_dssp SEEEEECTT-S--------CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECS-----------
T ss_pred CEEEEEcCC-C--------CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecC-----------
Confidence 999999988 5 344444455566778888889999999999999999986 3322221100
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
...+..++.+. +..||.++ +.+..+| .+++.+..+........ ....+.
T Consensus 176 ------------------~~~~~~~~~d~-~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~--------~~~~~~-- 224 (330)
T 3hxj_A 176 ------------------DAITSAASIGK-DGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVT--------RPAISE-- 224 (330)
T ss_dssp ------------------SCCCSCCEECT-TCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCS--------CCEECT--
T ss_pred ------------------CCceeeeEEcC-CCEEEEEe-CEEEEEC-CCCcEEEEEccCCccee--------ceEECC--
Confidence 11122233333 44577777 8899999 77776554432111000 000000
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecC-CcEEEEeccCcc----ccCCCceEEEEEcCCCcEEEEECCCeEEEEcC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP 447 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~~g~~----~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~ 447 (838)
...+++++. .++.++...+.. ......+.++++.++|.||.++.+|.|..+|.
T Consensus 225 ----------------------~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 225 ----------------------DGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ----------------------TSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred ----------------------CCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 112344433 344444322211 11111223455677899999999988999999
Q ss_pred CCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC
Q 003217 448 NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~ 487 (838)
+|+.+..+......+.++.. .+..||.|+.+|.+++...+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 88877777665666777777 35579999999999988764
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.79 E-value=5.1e-07 Score=96.69 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC-CCcEEEEEC
Q 003217 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~-DgtIrvWd~ 269 (838)
......+++++|+ ++|++..++.|..|+..+ + ...+..+.+.+.+++++++|+||.+.. ++.|.+|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g---------~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG---------T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS---------C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC---------C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 3556788999998 889999999999999843 2 344556677899999999999887765 478999987
Q ss_pred C
Q 003217 270 E 270 (838)
Q Consensus 270 ~ 270 (838)
+
T Consensus 115 ~ 115 (305)
T 3dr2_A 115 D 115 (305)
T ss_dssp T
T ss_pred C
Confidence 5
No 211
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.75 E-value=3.9e-07 Score=99.90 Aligned_cols=107 Identities=9% Similarity=-0.080 Sum_probs=67.6
Q ss_pred CCCceEEEEEcC-CCc-EEEEECC------CeEEEEcCCCCeeeEeecCC--ccEEEE--EEcCCEEEEEeeC-----Ce
Q 003217 418 DNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDPNGNRLQDFQYLP--FAVQCL--CTFGSQIWVGYMN-----GI 480 (838)
Q Consensus 418 ~~~~v~ala~S~-dg~-l~Sgs~D------gtIrlWD~~g~~l~tl~~H~--~~V~sl--s~dG~~LasGs~D-----gt 480 (838)
+...+..+.++| ||. |+..+.+ ..|.+||+.+...+.+..+. ..+..+ ++||++|+.++.+ +.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 344567788999 676 6665543 35888898665555554432 245555 4579887777654 56
Q ss_pred EEEEeCC-Ccc--cccccccccCEEEEEe-CCCEEEEEc----------------CCCCeeeeecCC
Q 003217 481 VQVLDLE-GNL--LGGWVAHSSPVIKMAV-GAGYIFTLA----------------NHGGIRGWNVTS 527 (838)
Q Consensus 481 IrlWD~~-g~~--i~~l~gH~~~V~sla~-dg~~l~S~S----------------~DgtIrlWdl~s 527 (838)
|++||++ ++. +..+.++. ....+ ||+.++.++ .+..|.+||+..
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 9999987 443 22233332 33456 889888654 346788888754
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.75 E-value=6.7e-07 Score=108.22 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=133.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc---
Q 003217 193 SVMCMVGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~D-----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (838)
.+..++|||||++|+.++.+ .+|++||++++. .. ....+...+.+++|+|| + |+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--------~~-~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--------PL-ADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--------EE-EEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CC-CccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 67889999999999887765 369999999972 22 22112222357899999 7 777776654
Q ss_pred -----------EEEEECCCcce--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC
Q 003217 264 -----------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (838)
Q Consensus 264 -----------IrvWd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s 330 (838)
|++|++.+... .+.+.... + ...+..+..++++..|+..+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPE-----------------L----------PKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCC-----------------C----------CeEEEEEEECCCCCEEEEEE
Confidence 88888865431 11111000 0 00133444555665444322
Q ss_pred -C-----CcEEEEeccCc--cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec
Q 003217 331 -F-----LSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (838)
Q Consensus 331 -~-----~tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~ 402 (838)
+ ..|.+||+.++ ++.+.+..+..
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~------------------------------------------------- 317 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLK------------------------------------------------- 317 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSS-------------------------------------------------
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCC-------------------------------------------------
Confidence 2 25788888766 20122211000
Q ss_pred CCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEEC----CCeEEEEcCCC--CeeeEee-cCCccEEEEEEcCC-EEE
Q 003217 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGA----NGLLLQWDPNG--NRLQDFQ-YLPFAVQCLCTFGS-QIW 473 (838)
Q Consensus 403 ~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~----DgtIrlWD~~g--~~l~tl~-~H~~~V~sls~dG~-~La 473 (838)
.+.... +++| .|+..+. ++.|.+||+.+ ...+++. .+...+.++++++. .++
T Consensus 318 ------------------~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~ 378 (741)
T 1yr2_A 318 ------------------AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378 (741)
T ss_dssp ------------------SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred ------------------ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence 000111 1333 3544443 34599999843 3444444 44455666766554 667
Q ss_pred EEeeCCeEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeeecCCC
Q 003217 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSP 528 (838)
Q Consensus 474 sGs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrlWdl~s~ 528 (838)
+...|+..+||. ++|+..+.+..+ .+.|..+. ++++.++ |..+.++|.+||+.+.
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 777898887775 557766666654 56677776 4666555 4456789999997653
No 213
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.73 E-value=4.5e-06 Score=101.20 Aligned_cols=318 Identities=15% Similarity=0.202 Sum_probs=176.2
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+++|..+ .+.||+|++++|.++|..+...... ......+ ..+. .+.|.|+..|.+| .||.|+..
T Consensus 233 ~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~----------~~~~~~~--~~l~-~~~i~~i~~D~~g-~lWiGT~~ 298 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI----------IHDSRNI--QSLT-NNIIWNIFADQEH-NIWLGTDY 298 (758)
T ss_dssp EEEEEEECTTCCEEEEETTEEEEECCTTSCCEEE----------CCCTTCT--TSCS-CSCEEEEEECTTC-CEEEEESS
T ss_pred eEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE----------EcCCCCc--CcCC-cCeEEEEEEcCCC-CEEEEeCC
Confidence 46677776 4499999999999998754321100 0000011 1233 5679999999765 58999988
Q ss_pred CcEEEEECCCCccCCCCCcceeEEec-----cccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc-eeeecCCCceeee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTA 286 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~-~~~~~~~~~~~~~ 286 (838)
| +-+...... ++. .... .....|.++..+++|.||.|+.+| +-.++..++. ..+....
T Consensus 299 G-l~~~~~~~~-------~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~------ 362 (758)
T 3ott_A 299 G-ISLSRYNSA-------LQF-IPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYR------ 362 (758)
T ss_dssp S-EEEECCCC--------CEE-EEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEEC------
T ss_pred c-ccccccCCc-------eeE-EecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEec------
Confidence 8 433332211 111 1111 123579999999999999998665 5555543321 1111000
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
+. .....++...|.+++.+. ...||.|+++++..+|..++++.......... ..+...
T Consensus 363 -------------~~--~~~~~l~~~~v~~i~~d~-~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~----~~~~~~-- 420 (758)
T 3ott_A 363 -------------MG--DKTYPLSHNRIRHIYEDK-EQQLWIATDGSINRYDYATRQFIHYNIVDNTG----TYNTNW-- 420 (758)
T ss_dssp -------------TT--CSSSCCSCSCEEEEEECT-TSCEEEEETTEEEEEETTTTEEEEEEEECCC------CBSSS--
T ss_pred -------------cC--CcCCCCCCCceEEEEECC-CCCEEEEeCCcHhhcCcCCCcEEEeecCCCcC----CCCCce--
Confidence 00 000012244577777664 45789888889999999988764321111100 000000
Q ss_pred ccccceeeEEEecCCCCcceeeeeEe-ecCcceeeecC-CcEEEEecc-------Cccc---------c-CCCceEEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAA-DAVRRVAAK-------GGFG---------D-DNRRTEALTT 427 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~-~~v~~v~~~-------g~~~---------~-~~~~v~ala~ 427 (838)
+ .... +....+|+|+. .|+.++... +.+. + ....|.++..
T Consensus 421 -----v----------------~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 479 (758)
T 3ott_A 421 -----T----------------YYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIP 479 (758)
T ss_dssp -----E----------------EEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEE
T ss_pred -----E----------------EEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEE
Confidence 0 0111 11234677774 467766532 1111 0 1235888999
Q ss_pred cCCCcEEE--EECCCeEEEEcCCCCeeeEeec----CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCcccccc---ccc
Q 003217 428 SIDGMIWT--GGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGW---VAH 497 (838)
Q Consensus 428 S~dg~l~S--gs~DgtIrlWD~~g~~l~tl~~----H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l---~gH 497 (838)
+++|.||. |+.+| |..+|.....+..+.. ....|.++..|. ..||.|+. +.|..+|..+.....+ ...
T Consensus 480 d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~ 557 (758)
T 3ott_A 480 DNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFS 557 (758)
T ss_dssp CTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC--
T ss_pred cCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCC
Confidence 99999997 55455 8889985444444421 134688888874 48888886 4688899864333222 123
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
...|.+|..+.. .++.++++.|..++..+
T Consensus 558 ~~~i~~i~~~~g-~lWi~t~~Gl~~~~~~~ 586 (758)
T 3ott_A 558 NNEILSMTCVKN-SIWVSTTNGLWIIDRKT 586 (758)
T ss_dssp -CCEEEEEEETT-EEEEEESSCEEEEETTT
T ss_pred ccceEEEEECCC-CEEEECCCCeEEEcCCC
Confidence 456888876533 34455566787787543
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.73 E-value=2.9e-06 Score=90.43 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=123.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 195 ~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
-+.+|+++ +.++|+...++.|..||..++. ...+ .+...+.+++++++|+||.+. ++.|.+||.++++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---------VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc---------EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCc
Confidence 35678884 6788888899999999998852 2222 235689999999999988776 5689999987643
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-----------cEEEEeccC-
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-----------SFALWDART- 341 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-----------tI~lWD~~t- 341 (838)
......... . . +......++.++++. +|.++.. .-.||.+..
T Consensus 85 ~~~~~~~~~-----------------~-~-------~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 85 AVVLATVDN-----------------D-K-------KNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp EEEEEECCT-----------------T-C-------SSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred EEEEEecCC-----------------C-C-------CCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC
Confidence 211000000 0 0 011234566666554 5543210 011111100
Q ss_pred ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
++. ..+ ......
T Consensus 139 g~~--------------------------------------------------------------~~~------~~~~~~ 150 (297)
T 3g4e_A 139 HHV--------------------------------------------------------------KKY------FDQVDI 150 (297)
T ss_dssp SCE--------------------------------------------------------------EEE------EEEESB
T ss_pred CCE--------------------------------------------------------------EEE------eecccc
Confidence 000 000 001112
Q ss_pred eEEEEEcCCCc-E-EEEECCCeEEEEcC---CCCe-----eeEeecCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCC-
Q 003217 422 TEALTTSIDGM-I-WTGGANGLLLQWDP---NGNR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLE- 487 (838)
Q Consensus 422 v~ala~S~dg~-l-~Sgs~DgtIrlWD~---~g~~-----l~tl~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~- 487 (838)
...++++||++ | ++.+.++.|.+||. +|.. +..+..+......++.| | .||++. .++.|.+||.+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCC
Confidence 34688999986 5 45556788999985 3543 22233334556677764 5 566655 46789999997
Q ss_pred CcccccccccccCEEEEEeC
Q 003217 488 GNLLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d 507 (838)
|+++..+..+...++++++.
T Consensus 230 G~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEE
T ss_pred ceEEEEEECCCCCceEEEEe
Confidence 89888888887889998874
No 215
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.71 E-value=4.6e-07 Score=96.17 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=118.2
Q ss_pred cCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC
Q 003217 251 SYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (838)
Q Consensus 251 ~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s 330 (838)
|+..|++++.|+.|.+||.++++...++..+. ...+..++..+++..++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----------------------------~~~~~~~~~~pdG~ilv-s~ 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----------------------------GWECNSVAATKAGEILF-SY 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT----------------------------TCCCCEEEECTTSCEEE-EC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----------------------------cCCCcCeEECCCCCEEE-eC
Confidence 43347899999999999998876554443211 01233455566666665 44
Q ss_pred CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
+..|..||. +|+.+..+..+..
T Consensus 55 ~~~V~~~d~-~G~~~W~~~~~~~--------------------------------------------------------- 76 (276)
T 3no2_A 55 SKGAKMITR-DGRELWNIAAPAG--------------------------------------------------------- 76 (276)
T ss_dssp BSEEEEECT-TSCEEEEEECCTT---------------------------------------------------------
T ss_pred CCCEEEECC-CCCEEEEEcCCCC---------------------------------------------------------
Confidence 678999998 7887665532100
Q ss_pred ccCccccCCCceEEEEEcCCCcE-EEEEC-CCeEEEEcCCCCeeeEeec------CCccEE--EEEEcCCEEEEEeeCCe
Q 003217 411 AKGGFGDDNRRTEALTTSIDGMI-WTGGA-NGLLLQWDPNGNRLQDFQY------LPFAVQ--CLCTFGSQIWVGYMNGI 480 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~dg~l-~Sgs~-DgtIrlWD~~g~~l~tl~~------H~~~V~--sls~dG~~LasGs~Dgt 480 (838)
..+.++.+.+||.+ ++.+. ++.|..+|.+|+.+.++.. +..... ++..+|++|++.+.++.
T Consensus 77 ---------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~ 147 (276)
T 3no2_A 77 ---------CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE 147 (276)
T ss_dssp ---------CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred ---------ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE
Confidence 01223445677774 45555 6677777888887777652 111222 23457999999999999
Q ss_pred EEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCC
Q 003217 481 VQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 481 IrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
|.+||.+|+.+-++..+.. +.++. .+|+.+++++.++.|..+|..+.
T Consensus 148 v~~~d~~G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 148 VREIAPNGQLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEEECCCCCEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9999999998777766533 33333 47888888888888888886543
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.70 E-value=2.8e-06 Score=95.46 Aligned_cols=236 Identities=13% Similarity=0.094 Sum_probs=138.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC--cEEEEE
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG--GIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg--tIrvWd 268 (838)
.....|+++++|+++++...++.|++||.+++ . +..+........ ++|+++|+ |+.+..++ .|.+|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~-~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------K-VTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------E-EEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------E-EEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 36788999999998888888899999999875 2 333322222233 99999998 67777655 677777
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
..+......+ .. +... .......++.++.+..|+.+. .+.|..||..++.. ..
T Consensus 201 ~~~~~~~~~~-------g~---------~~~~---------~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~ 254 (409)
T 3hrp_A 201 KASGWAPTRI-------GQ---------LGST---------FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TL 254 (409)
T ss_dssp GGGTTCEEEE-------EE---------CCTT---------SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EE
T ss_pred cCCCceeEEe-------ee---------ccch---------hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EE
Confidence 6543211010 00 0000 011233456666455555543 35688899887653 22
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+..... ... . . ......+++
T Consensus 255 ~~~~~~------------------------~g~----------------------------------~-~-~~P~~~ia~ 274 (409)
T 3hrp_A 255 IKQLEL------------------------SGS----------------------------------L-G-TNPGPYLIY 274 (409)
T ss_dssp EEECCC------------------------CSC----------------------------------C-C-CSSCCEEEE
T ss_pred Eecccc------------------------cCC----------------------------------C-C-CCccccEEE
Confidence 211000 000 0 0 000015678
Q ss_pred cC-CCcEEEE-ECCCeEEEEcCCCCeeeEeecCC---------------ccEEEEEE--cCCEEEEEe-eCCeEEEEeCC
Q 003217 428 SI-DGMIWTG-GANGLLLQWDPNGNRLQDFQYLP---------------FAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 428 S~-dg~l~Sg-s~DgtIrlWD~~g~~l~tl~~H~---------------~~V~sls~--dG~~LasGs-~DgtIrlWD~~ 487 (838)
+| ++.|+.+ ..++.|+.||.+|+ +.++.++. .....+++ +|...++-+ .++.|+.||+.
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 88 5776544 45788999998876 44454443 34566766 577555555 68899999955
Q ss_pred -Cccccccccc---------------ccCEEEEEeC--CCEEEEEcCCCCeeeeec
Q 003217 488 -GNLLGGWVAH---------------SSPVIKMAVG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 488 -g~~i~~l~gH---------------~~~V~sla~d--g~~l~S~S~DgtIrlWdl 525 (838)
|. +.++.++ -.....|+.+ |...++-..++.||.+++
T Consensus 354 ~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 4444444 2457778764 555667777888887764
No 217
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.66 E-value=2.6e-05 Score=94.39 Aligned_cols=318 Identities=15% Similarity=0.225 Sum_probs=182.1
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+.+|..+ .+.||++++++|..+|..+...... . .+....+. ...|.++..+++++.||.|+..
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~------------~--~~~~~~~~-~~~i~~i~~d~~~~~lWigt~~ 211 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI------------P--LPVHSSQS-NLFVNSLLEDTTRQCVWIGTEG 211 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE------------C--CCCCTTCS-SCCEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe------------c--CCCccccc-cceeEEEEEECCCCEEEEEECC
Confidence 46777777 5599999988999998754321100 0 00000011 3358999999888889999865
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
| +..++..++. +.....+ ....|.+|+..++|.||.|+. +.+.+++..+.... .+...
T Consensus 212 G-l~~~~~~~~~------~~~~~~l--~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~-~~~~~----------- 269 (758)
T 3ott_A 212 Y-LFQYFPSTGQ------IKQTEAF--HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQ-HIIHD----------- 269 (758)
T ss_dssp E-EEEEETTTTE------EEEEEEE--EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCE-EECCC-----------
T ss_pred C-CeEEcCCCCe------EEeccCC--CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEE-EEEcC-----------
Confidence 4 5678876641 1111112 235699999999999999985 46777876543211 00000
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
......++...|.++..+. .+.||.|++.++.+... +... +.+... .... ...
T Consensus 270 ----------~~~~~~l~~~~i~~i~~D~-~g~lWiGT~~Gl~~~~~-~~~~-~~~~~~-------~~~~----~~~--- 322 (758)
T 3ott_A 270 ----------SRNIQSLTNNIIWNIFADQ-EHNIWLGTDYGISLSRY-NSAL-QFIPIS-------QITG----TGD--- 322 (758)
T ss_dssp ----------TTCTTSCSCSCEEEEEECT-TCCEEEEESSSEEEECC-CC-C-EEEEHH-------HHSC----SCC---
T ss_pred ----------CCCcCcCCcCeEEEEEEcC-CCCEEEEeCCccccccc-CCce-eEEecc-------cCCC----CCC---
Confidence 0000112345678887765 45789888766655432 2111 111100 0000 000
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-C---cc---c-------cCCCceEEEEEcCCCcEEEEEC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-G---GF---G-------DDNRRTEALTTSIDGMIWTGGA 438 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g---~~---~-------~~~~~v~ala~S~dg~l~Sgs~ 438 (838)
...+.++ +.+....+|+|+..|+.++... + .+ . -....|.++..+.+|.||.|+.
T Consensus 323 ----------~~~v~~i-~~D~~g~lWiGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~ 391 (758)
T 3ott_A 323 ----------GNQFYSL-FRDSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD 391 (758)
T ss_dssp ----------CCBEEEE-EECTTCCEEEEETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET
T ss_pred ----------CceEEEE-EEcCCCCEEEeeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC
Confidence 0000000 1122345678877777776532 1 11 0 0123588899999999999995
Q ss_pred CCeEEEEcCCCCeeeEeec-------CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCC------c-cc--ccc---c-cc
Q 003217 439 NGLLLQWDPNGNRLQDFQY-------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEG------N-LL--GGW---V-AH 497 (838)
Q Consensus 439 DgtIrlWD~~g~~l~tl~~-------H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g------~-~i--~~l---~-gH 497 (838)
+ -|.++|........+.. ....|.++..|. ..||.|+..+.|.++|... + .. ..+ . ..
T Consensus 392 ~-GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (758)
T 3ott_A 392 G-SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS 470 (758)
T ss_dssp T-EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred C-cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccc
Confidence 4 58999985444444321 235689998875 4899999888899998542 1 11 111 1 12
Q ss_pred ccCEEEEEeCCCEEEEE--cCCCCeeeeecCC
Q 003217 498 SSPVIKMAVGAGYIFTL--ANHGGIRGWNVTS 527 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~--S~DgtIrlWdl~s 527 (838)
...|.+|..|.+..++. ++.+.|..+|..+
T Consensus 471 ~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 471 GMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp CSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred cceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 34699998876544444 7778888888643
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.64 E-value=1e-05 Score=87.60 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=124.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 195 ~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
.+.+++|+ +.++|++..++.|.+||..++ + ...+. +...|.+++++++|++|.++.+ .|.+||.++++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--------~-~~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASG--------R-KTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTT--------E-EEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCC--------c-EEEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCc
Confidence 35678886 567888888999999999875 2 22332 3467999999999998766654 48999986643
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------CcEEEEeccCccEEEE
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRELLKV 347 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------~tI~lWD~~tg~~l~~ 347 (838)
......... + .+...+..++.++++. +|.++. ....||.+.++++...
T Consensus 121 ~~~~~~~~~----------------------~---~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~~~~~ 174 (326)
T 2ghs_A 121 LTLHAELES----------------------D---LPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKL 174 (326)
T ss_dssp EEEEECSST----------------------T---CTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEE
T ss_pred EEEEeeCCC----------------------C---CCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCcEEEe
Confidence 211000000 0 0011244566666554 444331 0112222112221100
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
. ........+++
T Consensus 175 ~--------------------------------------------------------------------~~~~~~~~i~~ 186 (326)
T 2ghs_A 175 F--------------------------------------------------------------------ADISIPNSICF 186 (326)
T ss_dssp E--------------------------------------------------------------------EEESSEEEEEE
T ss_pred e--------------------------------------------------------------------CCCcccCCeEE
Confidence 0 00011235778
Q ss_pred cCCCc-EEEE-ECCCeEEEEcCC---C-Ce-----eeEeecCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCccccc
Q 003217 428 SIDGM-IWTG-GANGLLLQWDPN---G-NR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGG 493 (838)
Q Consensus 428 S~dg~-l~Sg-s~DgtIrlWD~~---g-~~-----l~tl~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~ 493 (838)
++||+ ++.+ +.++.|.+||.. | +. +..+..+......++.| | .||++. .++.|.+||.+++.+..
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~ 265 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIAR 265 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCEEEE
Confidence 89986 5444 456789999973 5 31 22232234456677765 5 466655 46899999998888788
Q ss_pred ccccccCEEEEEeC---CCEEEE
Q 003217 494 WVAHSSPVIKMAVG---AGYIFT 513 (838)
Q Consensus 494 l~gH~~~V~sla~d---g~~l~S 513 (838)
+..+...+.+++++ ++.|+.
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEE
T ss_pred EECCCCCcEEEEEecCCCCEEEE
Confidence 87777778888853 445543
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.61 E-value=2.1e-06 Score=93.75 Aligned_cols=258 Identities=8% Similarity=-0.042 Sum_probs=136.8
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCccCCCCCcceeEE-------eccccccEEEEEEecCCCEEEeeC--
Q 003217 192 SSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLDSDDGFGEVLS-------WQAHRGPVLSLCISSYGDLWSGSE-- 260 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs--~DGtIrvWd~~~g~~~~~~~~~~~~~-------l~gH~~~V~slafs~dG~L~SgS~-- 260 (838)
..+..++++++|+++++.. .++.++||.+.++ + ... ..+|-..+.+|+++++|+||....
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--------~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--------G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--------E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--------C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 4678899999999998865 3454677777543 1 221 234667899999999999875442
Q ss_pred ----CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-----CC
Q 003217 261 ----GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----GF 331 (838)
Q Consensus 261 ----DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-----s~ 331 (838)
+..|.+||+.+++....+..... .. .+......+++++.+..++.+ ..
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------~~-------~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPP----------------IT-------LSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTT----------------TS-------CTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChh----------------hc-------ccccccceEEEecCCCEEEEEcCccCCC
Confidence 57899999876542211110000 00 001122345555444454433 23
Q ss_pred CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec
Q 003217 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (838)
Q Consensus 332 ~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (838)
.+|.+||+.+++..+++..+.... +.. . .+...+........++....+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~------~~~-~-----------------------~~~~~g~~~~~~~~~g~~~~~- 193 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIA------PED-I-----------------------DLVIDGVPVQIGQPDGTVIRP- 193 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTS------CCS-C-----------------------CCEETTEECBEECTTSCEECC-
T ss_pred CeEEEEECCCCCEEEEecCCCccc------ccc-c-----------------------ceeECCEEEEeccCCCceece-
Confidence 589999999998876654321110 000 0 000000000111111111111
Q ss_pred cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC------CC-----eee--EeecCCccEEEEEE--cCCEEEEE
Q 003217 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN------GN-----RLQ--DFQYLPFAVQCLCT--FGSQIWVG 475 (838)
Q Consensus 412 ~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~------g~-----~l~--tl~~H~~~V~sls~--dG~~LasG 475 (838)
...+..++++|||+ |+.+..++. ++|.+. +. ... ...++......++. +|...++.
T Consensus 194 -------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 194 -------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp -------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEE
T ss_pred -------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEc
Confidence 12345789999996 777776653 455431 11 011 11123333334444 57666666
Q ss_pred eeCCeEEEEeC-CCcccccccc-cccCEEEEEe--CCCEEEEEcCCCCe
Q 003217 476 YMNGIVQVLDL-EGNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGI 520 (838)
Q Consensus 476 s~DgtIrlWD~-~g~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtI 520 (838)
..++.|.+||. +|+....... +-..+.++++ +++..++.+..+.+
T Consensus 266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 67899999999 6764322222 2456788876 45555555544433
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.60 E-value=6.3e-06 Score=91.47 Aligned_cols=277 Identities=9% Similarity=-0.004 Sum_probs=155.8
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee----------C
Q 003217 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------E 260 (838)
Q Consensus 197 la~s~dg~~LaSGs~-----DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~ 260 (838)
....|+++.++.... +++|-+.|..++ +.+.++..-..+ . |++||||+ |+.++ .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 455789999999876 689999999886 555555433445 4 99999998 66554 4
Q ss_pred CCcEEEEECCCcceeeecCCCc-eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEE
Q 003217 261 GGGIKIWPWEAIEKALSLKPEE-RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFAL 336 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~l 336 (838)
+++|.+||..+.+..-++.... .. .. . -..-..+++++++.++|.+. .++|.+
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r--------------~~--~-------g~~P~~~a~spDGk~lyVan~~~~~~VsV 164 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPR--------------FL--V-------GTYPWMTSLTPDGKTLLFYQFSPAPAVGV 164 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCC--------------CC--B-------SCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccc--------------cc--c-------CCCCceEEEcCCCCEEEEEEcCCCCeEEE
Confidence 6889999998754322111000 00 00 0 00122356778888888764 368999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEeccCcc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKGGF 415 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~~g~~ 415 (838)
+|+.+++++.++...+... ..+.... + -+...+++..+++.... +.........+
T Consensus 165 ID~~t~~vv~tI~v~g~~~----~~P~g~~------~--------------~~~~~~DG~~~~v~~~~~g~v~~~~~~~~ 220 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYH----IFPTAPD------T--------------FFMHCRDGSLAKVAFGTEGTPEITHTEVF 220 (386)
T ss_dssp EETTTTEEEEEEECCSEEE----EEEEETT------E--------------EEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred EECCCCcEEEEEECCCcce----eecCCCc------e--------------eEEECCCCCEEEEECCCCCeEEEeeccee
Confidence 9999999998875433210 0000000 0 00111111122222111 10000000001
Q ss_pred ccCCCce-EEEEE-cCCCcEEEEECCCeEEEEcCCCC---eeeEee------------cCCccEEEEEEcCCEEEEEee-
Q 003217 416 GDDNRRT-EALTT-SIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM- 477 (838)
Q Consensus 416 ~~~~~~v-~ala~-S~dg~l~Sgs~DgtIrlWD~~g~---~l~tl~------------~H~~~V~sls~dG~~LasGs~- 477 (838)
......+ ...++ .++|+++-.+.+|+|.+.|..+. .+..+. ........+..+++++++...
T Consensus 221 ~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 0011111 11233 47888666777899999999543 333332 112233455667888888653
Q ss_pred ---------CCeEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEE-EcCCCCeeeeecCCCCCC
Q 003217 478 ---------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFT-LANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 478 ---------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S-~S~DgtIrlWdl~s~~~~ 531 (838)
...|-+.|++ ++.++.+..- ..+++|+ +|++ +|++ ...+++|.++|..+...+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 2579999987 6676666432 2456665 5776 6665 456899999998765443
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.60 E-value=5.2e-06 Score=91.25 Aligned_cols=257 Identities=16% Similarity=0.109 Sum_probs=146.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---------cccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---------RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH---------~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
++.|+.++.++.|..+|..+| +.+-..... ...+.+.....++.++.++.|+.|..+|.++++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG--------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG--------KEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCC--------ceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 578999999999999999887 343332221 233444333456779999999999999998876
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (838)
.......... +. ... + . .+..|+.++ ++.+..+|++||+.+..+....
T Consensus 125 ~~W~~~~~~~----------------------~~---~~p---~-~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 125 VAWQTKVAGE----------------------AL---SRP---V-V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEECSSC----------------------CC---SCC---E-E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCCCc----------------------eE---cCC---E-E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 5443321100 00 001 1 1 134566655 5679999999999877665432
Q ss_pred ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEec-cCccc------cC-----C
Q 003217 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA-KGGFG------DD-----N 419 (838)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~-~g~~~------~~-----~ 419 (838)
.... ........+. ...++++..++ +..+.. .|... .. .
T Consensus 174 ~~~~---~~~~~~~~~~-------------------------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 174 PSLS---LRGESAPTTA-------------------------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp --------CCCCCCEEE-------------------------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------
T ss_pred Ccee---ecCCCCcEEE-------------------------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 2100 0000000000 01112222221 222221 11100 00 0
Q ss_pred Cc---eEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 420 RR---TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 420 ~~---v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
.. +.....-.++.++.++.++.|..+|. +|+.+-... .....++..++..|++++.++.|..+|.+ |+.+-..
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ----CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 00 00000112678899988999999999 788765543 23455677788999999999999999986 6654333
Q ss_pred c-ccccCEEEEEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 495 V-AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 495 ~-gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
. .....+.+....+..++.++.++.|.++|..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 304 SDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC
T ss_pred cccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC
Confidence 2 122223333445678888899999999997664
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.58 E-value=2.6e-05 Score=83.01 Aligned_cols=216 Identities=11% Similarity=0.120 Sum_probs=125.2
Q ss_pred CCEEE-Ee-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLW-AG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~-~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
++.|| +. .++.|..||.++..... + .. ...+.+++++++|++ |.+. ++.|.+||
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~~~~i~~~~dG~l-~v~~-~~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQR------------------V---TM-DAPVSSVALRQSGGY-VATI-GTKFCALN 79 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEE------------------E---EC-SSCEEEEEEBTTSSE-EEEE-TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEE------------------E---eC-CCceEEEEECCCCCE-EEEE-CCeEEEEE
Confidence 34444 43 36789999986532110 1 11 457899999999995 4555 56788999
Q ss_pred CCCCccCCCCCcceeEEec-c-ccccEEEEEEecCCCEEEeeC----------CCcEEEEECCCcceeeecCCCceeeeE
Q 003217 220 MNARLLDSDDGFGEVLSWQ-A-HRGPVLSLCISSYGDLWSGSE----------GGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~-g-H~~~V~slafs~dG~L~SgS~----------DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
.+++. ++...... + ....++.++++|+|+||.++. ....+||.++.......+. .
T Consensus 80 ~~~g~------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------~- 146 (297)
T 3g4e_A 80 WKEQS------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF------D- 146 (297)
T ss_dssp TTTTE------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE------E-
T ss_pred CCCCc------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe------e-
Confidence 98762 11111111 1 134589999999999875542 2345666654311110000 0
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEec--cCccEEEEEecCCceEEeeecccC
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDA--RTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
. -.....++.++++..++.+. .+.|.+||+ .+|.+... ..
T Consensus 147 ------------~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----~~--------- 190 (297)
T 3g4e_A 147 ------------Q----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----RS--------- 190 (297)
T ss_dssp ------------E----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----EE---------
T ss_pred ------------c----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----EE---------
Confidence 0 01123456666666554332 356777776 45543100 00
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLL 442 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtI 442 (838)
+.. +......+..++++++|.||.+. .++.|
T Consensus 191 -------------~~~-----------------------------------~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 191 -------------VYK-----------------------------------LEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp -------------EEE-----------------------------------CCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred -------------EEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 000 00001123457788999988776 45689
Q ss_pred EEEcC-CCCeeeEeecCCccEEEEEEc---CCEEEEEeeC
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMN 478 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~sls~d---G~~LasGs~D 478 (838)
.+||. +|+.+..+..+...++++++. ++.|++++..
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99999 599999998887788988774 4678777653
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.58 E-value=1e-06 Score=98.11 Aligned_cols=175 Identities=7% Similarity=0.051 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~---~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
.++..|++++..+++++|+.|+.+ +|++....- +....++... ...+.+ |+.|+| |+. |+.+ .+++|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 368899999999999999998654 698654210 0000122212 234667 999999 777 6677 88999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~ 347 (838)
|+.+....-.... + ...+..+...+. ..+...+++++.+||+.+++...
T Consensus 112 dv~sl~~~~~~~~-------------------~----------~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 112 DLEELSEFRTVTS-------------------F----------EKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp ESSSTTCEEEEEE-------------------C----------SSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE-
T ss_pred EchhhhccCccce-------------------e----------ecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc-
Confidence 9976432111100 0 001112222221 13333457899999998766421
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+ ...|.++++
T Consensus 161 ~----------------------------------------------------------------------~~~Vs~v~W 170 (388)
T 1xip_A 161 L----------------------------------------------------------------------AQNVTSFDV 170 (388)
T ss_dssp E----------------------------------------------------------------------EESEEEEEE
T ss_pred c----------------------------------------------------------------------cCCceEEEE
Confidence 0 012457889
Q ss_pred cCCCcEEEEECCCeEEEEcCCCCe---eeEe------e---cCCccEEEEEEc--CCEEEE
Q 003217 428 SIDGMIWTGGANGLLLQWDPNGNR---LQDF------Q---YLPFAVQCLCTF--GSQIWV 474 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~~g~~---l~tl------~---~H~~~V~sls~d--G~~Las 474 (838)
||+| ++.|..||+|++|+..+.. .+++ . +|...|.+|.+. +.++++
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 7889999999999995543 5566 2 478889999774 334443
No 224
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.56 E-value=1.9e-05 Score=92.49 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=141.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC--Cccee
Q 003217 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE--AIEKA 275 (838)
Q Consensus 199 ~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~--~~~~~ 275 (838)
.|+.+.++++...+++|.++|..++ +.+.++.. ...+..++|||||+ |++++.|+.|.+||+. +.+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4456677888888999999999986 44545543 23567999999998 7888999999999985 33211
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc----CCCCEEEEeCC--CcEEEEeccCccEEEEEe
Q 003217 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAGF--LSFALWDARTRELLKVFN 349 (838)
Q Consensus 276 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~ 349 (838)
.++. . ......++++ +++..++.+.. .++.++|..|.++++++.
T Consensus 234 ~~i~-----------------------~-------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 234 AEIK-----------------------I-------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEEE-----------------------C-------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEe-----------------------c-------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 1110 0 1123456777 47888887763 689999999998887654
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
..+.. . + .. .+. ...++.++..++
T Consensus 284 ~~~~~-------~------~---------~~---------~~~-------------------------p~~rva~i~~s~ 307 (567)
T 1qks_A 284 TRGMT-------Y------D---------EQ---------EYH-------------------------PEPRVAAILASH 307 (567)
T ss_dssp CCEEC-------T------T---------TC---------CEE-------------------------SCCCEEEEEECS
T ss_pred ccccc-------c------c---------cc---------ccc-------------------------CCCceEEEEEcC
Confidence 21100 0 0 00 000 001233455566
Q ss_pred CCc--EEEEECCCeEEEEcCC-CCee--eEeecCCccEEEE--EEcCCEEEEEe-eCCeEEEEeCC-Cccccccc-----
Q 003217 430 DGM--IWTGGANGLLLQWDPN-GNRL--QDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV----- 495 (838)
Q Consensus 430 dg~--l~Sgs~DgtIrlWD~~-g~~l--~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~----- 495 (838)
++. +++...+|.|.++|.. .+.+ .++ ........+ .++|++++++. .+++|.++|++ ++++....
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 544 3344456888888883 3322 222 122233444 45789888776 57899999987 56544332
Q ss_pred cccc-CEEEEEeCCCEEE-EEc-CCCCeeeeecCC
Q 003217 496 AHSS-PVIKMAVGAGYIF-TLA-NHGGIRGWNVTS 527 (838)
Q Consensus 496 gH~~-~V~sla~dg~~l~-S~S-~DgtIrlWdl~s 527 (838)
.|.+ .+.-+.+++..++ +.. .+++|.+++...
T Consensus 387 Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 387 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3543 2332345555554 332 568999999764
No 225
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.54 E-value=6.8e-05 Score=83.03 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=47.1
Q ss_pred EEEEcCCEEEEEee----------CCeEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEEEc-CCCCeeeeecCCC
Q 003217 464 CLCTFGSQIWVGYM----------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSP 528 (838)
Q Consensus 464 sls~dG~~LasGs~----------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S~S-~DgtIrlWdl~s~ 528 (838)
.+.++|++|+++.. ++.|.+.|++ ++.++++..-. ..++++ +||+ .++++. .+++|.++|+.+.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 45668888888653 3589999987 56666664322 355555 6888 677777 5899999998775
Q ss_pred CCC
Q 003217 529 GPL 531 (838)
Q Consensus 529 ~~~ 531 (838)
..+
T Consensus 352 ~vv 354 (373)
T 2mad_H 352 DQD 354 (373)
T ss_pred CEE
Confidence 443
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.54 E-value=4.4e-08 Score=108.58 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=101.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
++++|++|+.||.|..||..+| +.+.++.. +++.+..+..+|. +++++.|+.|+.||.++++.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 5789999999999999999998 55555554 5565666667776 67789999999999977654433321
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
... ..+. ...+ .. .+.+|++++ ++.++.||++||+.+..+..+..
T Consensus 78 ~~~--------------------~~~~---~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------ 123 (369)
T 2hz6_A 78 TIP--------------------ELVQ---ASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------ 123 (369)
T ss_dssp CHH--------------------HHHT---TCSC----C------CCCCEEEEEEEEECCC-------------------
T ss_pred cCc--------------------cccc---cCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------
Confidence 100 0000 0000 00 123444443 56799999999987544321100
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc-CCCcEEEEEC
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGMIWTGGA 438 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S-~dg~l~Sgs~ 438 (838)
..++ .++.+++++.
T Consensus 124 -----------------------------------------------------------------~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 124 -----------------------------------------------------------------DSLSPSTSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred -----------------------------------------------------------------ccccccCCEEEEEec
Confidence 0001 2345788888
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEEcC-----CEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-----SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG-----~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
|+.|+.||. +|+.+-.+..+. ..+.+.++ ..+++++.||.|+.||.+ |+.+-.+. ...+|..
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence 999999999 788766554321 11222333 578888999999999986 77654443 2344544
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.54 E-value=3.7e-06 Score=100.96 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=57.0
Q ss_pred CeEEEEcC-CCCe--eeEeecCCccEEEEEEcCCEEEEEeeCC---eEEEEeCCCcccccccc-cccCEEEEE--eCCCE
Q 003217 440 GLLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA-HSSPVIKMA--VGAGY 510 (838)
Q Consensus 440 gtIrlWD~-~g~~--l~tl~~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g-H~~~V~sla--~dg~~ 510 (838)
+.|..||+ ++.+ .+++..|...+.+++++|++|+....++ .|++||++|+..+.+.. +.+.|..+. ++++.
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSC
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCE
Confidence 57888998 4443 4667777665558888999888777544 78999998765555443 334455554 35555
Q ss_pred EE-EEcC---CCCeeeeecCC
Q 003217 511 IF-TLAN---HGGIRGWNVTS 527 (838)
Q Consensus 511 l~-S~S~---DgtIrlWdl~s 527 (838)
++ +.+. -++|..||+.+
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTT
T ss_pred EEEEecCCCCCCEEEEEECCC
Confidence 44 3322 26788888754
No 228
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.52 E-value=5.2e-06 Score=100.40 Aligned_cols=72 Identities=6% Similarity=-0.086 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EE
Q 003217 194 VMCMVGDEASGVVWSGHRDGR--------------IMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LW 256 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGt--------------IrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~ 256 (838)
+..++|+|| +.|+.++.|+. |.+|++.++. .+....+ ..|...+.++.|||||+ |+
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~ 283 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVV 283 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEE
Confidence 356899999 99999888765 8899998752 0112333 34445689999999998 66
Q ss_pred EeeCC-----CcEEEEECCCc
Q 003217 257 SGSEG-----GGIKIWPWEAI 272 (838)
Q Consensus 257 SgS~D-----gtIrvWd~~~~ 272 (838)
..+.+ ..|.+||++++
T Consensus 284 ~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 284 ITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEEECTTCSCCEEEEEEEETT
T ss_pred EEEEccCCCcceEEEEECCCC
Confidence 55433 48999998654
No 229
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.49 E-value=8.6e-07 Score=91.39 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred eeEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhc
Q 003217 553 KILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~-----~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 627 (838)
.|-+.|||+.+..... +.+.++|.. .+||| |+|||+.-. ..+.+.+.+
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~~~~ 61 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIPP-----------------------YCAYLKKRA 61 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHHHC
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCHH-----------------------HHHHHHhhc
Confidence 4889999998654321 235566663 35675 689997421 122344433
Q ss_pred CCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHH
Q 003217 628 DDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (838)
Q Consensus 628 ~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (838)
. .|...... -.+-...++.++..... +... .....+....++.+.+.+.+.+..+.++|+||.+.....+.
T Consensus 62 ~---~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 132 (256)
T 4gz1_A 62 A---SYTIITGN-EEGYFTAILLKKGRVKF---KSQE--IIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAE 132 (256)
T ss_dssp T---TEEEEESC-SSSSEEEEEEETTTEEE---EEEE--EEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHH
T ss_pred c---ccceeecc-ccCCceEEEEEeccccc---eecc--cccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhh
Confidence 1 23222211 12233345555543211 1111 11223344578889999999999999999999998888888
Q ss_pred HHHHHHHHHHhc
Q 003217 708 RNADFDHVYRTM 719 (838)
Q Consensus 708 Rn~d~~~I~~~l 719 (838)
|.+++..|++.+
T Consensus 133 ~~~q~~~~~~~l 144 (256)
T 4gz1_A 133 RIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHhhhh
Confidence 888898888875
No 230
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.46 E-value=6.7e-07 Score=92.35 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=80.1
Q ss_pred eeeEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhh
Q 003217 552 LKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (838)
Q Consensus 552 ~~i~~~twNv~~~~~~~-----~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 626 (838)
..|-+.|||+.+..... +.+.++|.. .+||| |||||+.-.. .+.+.+.
T Consensus 12 ~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~~-----------------------~~~l~~~ 64 (256)
T 4fva_A 12 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPIDKL 64 (256)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHHGG
T ss_pred CEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEecChhH-----------------------hHHHHHh
Confidence 46899999997543321 235566664 45674 6899985311 1123332
Q ss_pred cCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHH
Q 003217 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (838)
Q Consensus 627 l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~ 706 (838)
+. .|.......-++-..+++.++.+. .+..... .+......++.+.+.+.+.+..+.++|+||.+....-.
T Consensus 65 ~~---~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~ 135 (256)
T 4fva_A 65 QS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVI--HFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP 135 (256)
T ss_dssp GG---TEEEEESSTTSSSEEEEEEETTCE----EEEEEEE--ECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH
T ss_pred cC---CceEeecCCCCCcceEEEEeeccc----ceecccc--cCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchH
Confidence 21 233333333344455677776542 1222222 22233356788899999999999999999999887777
Q ss_pred HHHHHHHHHHHhc
Q 003217 707 RRNADFDHVYRTM 719 (838)
Q Consensus 707 ~Rn~d~~~I~~~l 719 (838)
+|.++++.+...+
T Consensus 136 ~~~~q~~~~~~~~ 148 (256)
T 4fva_A 136 QRCAQFGFCMDKV 148 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776643
No 231
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.45 E-value=5e-05 Score=85.19 Aligned_cols=107 Identities=9% Similarity=0.050 Sum_probs=70.7
Q ss_pred EEEec-CCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 137 TIVCT-EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 137 ~l~~~-~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
.|+.+ ...||++. ++.|++||.++..... + ........ ++++++++.|+.+..++
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~------------------~---~~~~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT------------------V---HPGFKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEE------------------E---EETCCBCB-CEECTTSSEEEEEBSST
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEE------------------e---eccCCCCc-eeEecCCCcEEEEecCC
Confidence 45554 33677743 4799999987543211 0 01011222 89999999999998877
Q ss_pred --cEEEEECCCCccCCCCCcceeEEe---cc-ccccEEEEEEec-CCCEEEeeCCCcEEEEECCCcc
Q 003217 214 --RIMCWKMNARLLDSDDGFGEVLSW---QA-HRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 214 --tIrvWd~~~g~~~~~~~~~~~~~l---~g-H~~~V~slafs~-dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
.|.+|+..++ .....+ .. +...+.+++++| +|.|+.+..++.|+.||.++..
T Consensus 193 ~~~I~~~d~~~~--------~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 193 THTVYVYMKASG--------WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp TCEEEEEEGGGT--------TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred CceEEEEEcCCC--------ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 7888887664 112222 12 456678999999 6778777778899999987643
No 232
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.43 E-value=7.4e-05 Score=82.87 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=69.7
Q ss_pred cCCEEEEec------CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe----
Q 003217 141 TEEQLWAGG------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (838)
Q Consensus 141 ~~~~l~~g~------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs---- 210 (838)
+++.+|... ++.|.+.|.++....+. + . . |..| . ++++|||+.|+.++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-----------------I-~-v-G~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-----------------I-D-G-GFLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-----------------E-E-E-CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-----------------E-E-C-CCCC-c-EEECCCCCEEEEEccccc
Confidence 566777632 56899999877554321 1 1 1 2445 4 99999999998876
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEec-cc------cccEEEEEEecCCC-EEEee--CCCcEEEEECCCcc
Q 003217 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH------RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIE 273 (838)
Q Consensus 211 ------~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH------~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~~~~ 273 (838)
.+++|.+||..+. +...++. +. ...-..++|+|||+ |+.+. .+++|.|+|+.+.+
T Consensus 101 r~~~G~~~~~VsviD~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEECCCC--------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 3678999999986 4444432 10 01234689999998 66554 37899999998754
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.41 E-value=7.6e-05 Score=80.62 Aligned_cols=213 Identities=13% Similarity=0.119 Sum_probs=122.7
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~ 222 (838)
.+|+. .++.|.+||.++..... + .. ...|.+++++++|+++++ +.+| |.+||..+
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~ 118 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTV------------------H---AL-PFMGSALAKISDSKQLIA-SDDG-LFLRDTAT 118 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEE------------------E---EC-SSCEEEEEEEETTEEEEE-ETTE-EEEEETTT
T ss_pred EEEEECCCCEEEEEECCCCcEEE------------------E---EC-CCcceEEEEeCCCeEEEE-ECCC-EEEEECCC
Confidence 44554 36789999986532110 1 01 346899999999876654 4554 88999887
Q ss_pred CccCCCCCcceeEEec-cc-cccEEEEEEecCCCEEEeeCC-----CcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 223 RLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEG-----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~-gH-~~~V~slafs~dG~L~SgS~D-----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
+. +....... ++ ...+++++++|+|++|.++.+ +..+||.+++++ ...+. .
T Consensus 119 g~------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~------~--------- 176 (326)
T 2ghs_A 119 GV------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLF------A--------- 176 (326)
T ss_dssp CC------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEE------E---------
T ss_pred Cc------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEee------C---------
Confidence 62 11111111 11 246899999999998755432 345566553211 00000 0
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEecc--Cc-cEEEEEecCCceEEeeecccCccccccc
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TR-ELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~--tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
. ......++.++++..+|.+. .+.|.+||+. +| ++. ....
T Consensus 177 ----~----------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----~~~~---------------- 221 (326)
T 2ghs_A 177 ----D----------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KAEV---------------- 221 (326)
T ss_dssp ----E----------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CCEE----------------
T ss_pred ----C----------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-----CceE----------------
Confidence 0 01223456666676655443 3567788764 44 210 0000
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeEEEEcCCC
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWDPNG 449 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtIrlWD~~g 449 (838)
+.. +......+..++++++|.+|.+. .++.|.+||.+|
T Consensus 222 ------~~~-----------------------------------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 222 ------FID-----------------------------------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp ------EEE-----------------------------------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred ------EEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 000 00001123457788899988776 457899999999
Q ss_pred CeeeEeecCCccEEEEEE---cCCEEEEEeeC
Q 003217 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~---dG~~LasGs~D 478 (838)
+.+..+..+...+.++++ +++.|++++..
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 888888887778888876 45678776654
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.39 E-value=3.4e-05 Score=82.31 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=43.9
Q ss_pred EEEcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEE
Q 003217 425 LTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (838)
Q Consensus 425 la~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (838)
++++++|.||+++.++ |.+||.+|+.+..+..+. .+.++++ +++.||+++.++..++
T Consensus 244 i~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 244 FCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECTTSCEEECCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEECCCCCEEEecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 5678899999888665 999999999988887655 4666665 6789999887654443
No 235
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.34 E-value=1.5e-06 Score=96.04 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred ceeeEEEEEEeCCCCCC-----cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhh
Q 003217 551 NLKILAGTWNVGQGRAS-----QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (838)
Q Consensus 551 ~~~i~~~twNv~~~~~~-----~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 625 (838)
...|-+.||||++.... ...+.+||.. .+||| |||||+.... .+.+.+
T Consensus 117 ~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~~-----------------------~~~l~~ 169 (362)
T 4gew_A 117 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPIDK 169 (362)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHHG
T ss_pred CCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChhH-----------------------hHHHHH
Confidence 34588999999865332 1346677774 45674 6899984211 112333
Q ss_pred hcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchH
Q 003217 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (838)
Q Consensus 626 ~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (838)
.+ ..|.......-++-..+||.|+.+. .+...... +.+.....+++.+++.+.+..|.++|+||.+.....
T Consensus 170 ~~---~~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~ 240 (362)
T 4gew_A 170 LQ---SLYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHR 240 (362)
T ss_dssp GG---GTEEEEESSTTSSSEEEEEEETTEE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hc---CCceEEeCCCCCCceEEEEEeccCc----cccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCccccch
Confidence 33 2455555555556667788886432 22222221 112223567888999999999999999999888888
Q ss_pred HHHHHHHHHHHHhc
Q 003217 706 NRRNADFDHVYRTM 719 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l 719 (838)
.+|.+++..+...+
T Consensus 241 ~~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 241 PQRCAQFGFCMDKV 254 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88988888887654
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.32 E-value=8.9e-05 Score=83.45 Aligned_cols=93 Identities=8% Similarity=-0.113 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEC
Q 003217 151 NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKM 220 (838)
Q Consensus 151 ~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs----------~DGtIrvWd~ 220 (838)
+.|.+.|.++...... + . + |..| .++++|||+.|+.+. .++.|.++|.
T Consensus 99 ~~VsVID~~t~~vv~~-----------------I-~-v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 99 TQQFVIDGSTGRILGM-----------------T-D-G-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp EEEEEEETTTTEEEEE-----------------E-E-E-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CeEEEEECCCCEEEEE-----------------E-E-C-CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 6899999987654331 1 1 1 2445 799999999999887 3678999999
Q ss_pred CCCccCCCCCcceeEEec-c-c-----cccEEEEEEecCCC-EEEeeC--CCcEEEEECCCcc
Q 003217 221 NARLLDSDDGFGEVLSWQ-A-H-----RGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIE 273 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~-g-H-----~~~V~slafs~dG~-L~SgS~--DgtIrvWd~~~~~ 273 (838)
.+. +...++. + - ...-..++|+|||+ |+.+.. +++|-+.|+.+.+
T Consensus 157 ~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 157 VTF--------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp TTC--------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred CCC--------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 886 3443332 1 0 11224689999998 666553 6889999997754
No 237
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.32 E-value=4.4e-06 Score=84.90 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
.....+.+.+.+.+..+.++|+||.+.....+.|.++++.|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKI 138 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHH
Confidence 346678888899999999999999998888888888999988875
No 238
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.32 E-value=1.8e-06 Score=90.22 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=78.2
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCE
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y 633 (838)
|-+.|||+.+.+...+.+.++|.. .++| ||||||+...... ...+.+. .+ + |
T Consensus 1 lrv~t~Nv~~~~~~~~~i~~~i~~--~~~D--ii~LQE~~~~~~~-------------------~~~~~l~-~~--g--y 52 (268)
T 1ako_A 1 MKFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKVHDDM-------------------FPLEEVA-KL--G--Y 52 (268)
T ss_dssp CEEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCCCGGG-------------------CCHHHHH-HT--T--C
T ss_pred CEEEEEehhHHHHHHHHHHHHHHH--cCCC--EEEEEeccCChhh-------------------CCHhHhc-cC--C--C
Confidence 357899998765555567777764 4567 4689998643210 0011221 11 2 3
Q ss_pred EEEeeeecccEEEEEEEecCCcCccCceeeceeecccCc--ccCCCceeEEEEEEcCeEEEEEeccccCCcc-----hHH
Q 003217 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AVN 706 (838)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~-----~~~ 706 (838)
..+....-+.-.+++|.|..+. .+. .++.. ...+++.+.+++.+.+..|+++|+||.+... ...
T Consensus 53 ~~~~~~~~~~~G~ailsr~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~ 123 (268)
T 1ako_A 53 NVFYHGQKGHYGVALLTKETPI----AVR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFP 123 (268)
T ss_dssp EEEEEEETTEEEEEEEESSCCS----EEE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHH
T ss_pred cEEEeCCCCcceEEEEEecCcc----eee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHH
Confidence 3333334444566778887643 222 22321 1245788999999988999999999987753 345
Q ss_pred HHHHHHHHHHHhc
Q 003217 707 RRNADFDHVYRTM 719 (838)
Q Consensus 707 ~Rn~d~~~I~~~l 719 (838)
.|.+.++.|.+.+
T Consensus 124 ~r~~~~~~l~~~~ 136 (268)
T 1ako_A 124 AKAQFYQNLQNYL 136 (268)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776654
No 239
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.27 E-value=4e-06 Score=87.34 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=80.3
Q ss_pred eEEEEEEeCCCCCC-----cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcC
Q 003217 554 ILAGTWNVGQGRAS-----QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD 628 (838)
Q Consensus 554 i~~~twNv~~~~~~-----~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 628 (838)
|-+.|||+.+.... .+.+..+|.. .++|| |+|||+...... +.+ .+.-..+.|...+.+.|.
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~--~~~DI--i~LQEv~~~~~~-------~~~--~~~~~~d~~~~~~~~~l~ 70 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAE--KQYDV--IAMQEVNQLMNN-------KII--FDDIREENYAWVLLETLQ 70 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHH--HTCSE--EEEEEEEEETTS-------CEE--ETTEETTCHHHHHHHHHT
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHh--cCCCE--EEEEEccccccc-------ccc--ccccccccHHHHHHHHHH
Confidence 77899999755332 1234445542 35675 679999632100 000 000011123333333332
Q ss_pred CC--CCEEEEee-----eecccEEEEEEEecCCcCccCceeeceee-cc-cCcccCCCceeEEEEEEcCeEEEEEecccc
Q 003217 629 DG--STFERVGS-----RQLAGLLIAVWVRKNLKDYVGDVDVAAVP-CG-FGRAIGNKGAVGLRVRVYDRIMCFVNCHFA 699 (838)
Q Consensus 629 ~~--~~y~~v~s-----~~l~g~~l~vf~r~~~~~~i~~v~~~~v~-~G-~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLa 699 (838)
.. ..|..+.. ..-.+-.+++|.|..+. +.+.-..+ +. .. .+..++.+.+++.+.+..+.++|+||.
T Consensus 71 ~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~----~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~v~~~Hl~ 145 (266)
T 3teb_A 71 KYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIK----AEDEFYCTFAQSVR-TISARRIVSITINYEGQDIEFYSCHMN 145 (266)
T ss_dssp TTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCS----EEEEEECSSCCCTT-CTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred HhCCCCeEEEEeccccCccccCCeEEEEECceec----CceeEEeCCCCCCC-CcccceEEEEEEEeCCeEEEEEEecCC
Confidence 21 24554311 12233355666665442 22211111 11 11 145699999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhc
Q 003217 700 AHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 700 a~~~~~~~Rn~d~~~I~~~l 719 (838)
+.....+.|.++++.|++.+
T Consensus 146 ~~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 146 LPNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp CTTCTTCCHHHHHHHHHTSS
T ss_pred CccCChHHHHHHHHHHHHHH
Confidence 88655667888888887754
No 240
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.21 E-value=1.9e-05 Score=87.79 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=79.1
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
|..|+| |+. |+++ .++.|++||+ +-........|...|.++.+....+++++.||+|.+||++ ++... +.
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~ 162 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LA 162 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EE
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----cc
Confidence 778889 555 6666 7899999999 4444455667788888887766569999999999999997 44432 56
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..|.++++.++.++.|..||+|++|+...
T Consensus 163 ~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 163 QNVTSFDVTNSQLAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred CCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence 78999999888899999999999998654
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.19 E-value=2.4e-07 Score=102.66 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeC
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~d 507 (838)
++.+++|+.|++|..||. +|+.+.++..+.. ...++++..|++|+.|+.|+.||.+ |+++-.+..+. ....+.+
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~ 167 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPE 167 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcccc
Confidence 456777888899999999 7988877765542 2334578899999999999999986 77654443222 1122233
Q ss_pred C-----CEEEEEcCCCCeeeeecCCC
Q 003217 508 A-----GYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 508 g-----~~l~S~S~DgtIrlWdl~s~ 528 (838)
+ ..++.++.|+.|+.||..+.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred CCccccceEEEECCCCEEEEEECCCC
Confidence 3 56778899999999997653
No 242
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.16 E-value=0.0008 Score=74.36 Aligned_cols=108 Identities=6% Similarity=-0.075 Sum_probs=66.8
Q ss_pred EEecCCEEEEec-----------CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE
Q 003217 138 IVCTEEQLWAGG-----------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (838)
Q Consensus 138 l~~~~~~l~~g~-----------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L 206 (838)
+..+++.||.+. ++.|.+||.++...... + .+++ . .. + .. ...-..++++|||++|
T Consensus 73 ~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~-i--~~~~----~-~~-~---~~-g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 73 AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD-I--ELPD----A-PR-F---DV-GPYSWMNANTPNNADL 139 (373)
T ss_pred ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE-E--ECCC----c-cc-c---cc-CCCccceEECCCCCEE
Confidence 344577888753 57899999976544321 0 0000 0 00 0 00 1123468999999999
Q ss_pred EEEeC--CCcEEEEECCCCccCCCCCcceeEE-eccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCc
Q 003217 207 WSGHR--DGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 207 aSGs~--DGtIrvWd~~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~ 272 (838)
+.++. ++.|-++| +++ +.... +.- .+ ++.+.|++. +++.+.||.+.+|+. ++
T Consensus 140 ~v~n~~~~~~v~viD-~t~--------~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGG--------SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred EEEecCCCCeEEEEE-CCC--------CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 99885 47899999 886 34444 321 11 255667764 567888999999998 54
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.14 E-value=0.00019 Score=86.12 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=39.3
Q ss_pred CCeEEEEeCC-CcccccccccccCEE-EEEeCCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVI-KMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~-sla~dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
+|+|+.||+. |+.+-....|..... .+...+..++.++.|+.++.||.++...+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4889999987 776555444433222 34567889999999999999998876554
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.14 E-value=0.00039 Score=74.56 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--------------------cccccEEEEEEec-
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------AHRGPVLSLCISS- 251 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------------------gH~~~V~slafs~- 251 (838)
...+++++++|+++|++..++.|..|+..++ ....+. +..+.+.+|++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 3456889999988999999999999988764 122221 1123578999997
Q ss_pred CCCEEEeeCCCcEEEEECCC
Q 003217 252 YGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 252 dG~L~SgS~DgtIrvWd~~~ 271 (838)
+|+||.+...+.|.++|..+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp TTEEEEEETTTEEEEECTTC
T ss_pred CCcEEEEECCCCEEEEeCCC
Confidence 78898887666688888754
No 245
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.13 E-value=0.00014 Score=86.94 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=66.6
Q ss_pred cCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCC--ceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003217 141 TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrv 217 (838)
.++.+|+++ ++.|.-+|.+++...... .. .......+ +..... . .+++ +++.|+.++.|+.+..
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~---~~~~~~~~~~~~~~~~-~----~~a~--~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTY---DP---QIDRSTGFKGCCDVVN-R----GVAL--WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEE---CC---CCCGGGGGGSSSCSCC-C----CCEE--ETTEEEEECTTSEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEE---cC---CCCccccccccccCCC-C----CceE--ECCEEEEEcCCCEEEE
Confidence 466777754 678888998776554420 00 00000000 000000 1 1233 3578999999999999
Q ss_pred EECCCCccCCCCCcceeEEeccc-c----ccEEEEEEecCCCEEEeeC------CCcEEEEECCCcceeeec
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAH-R----GPVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH-~----~~V~slafs~dG~L~SgS~------DgtIrvWd~~~~~~~~~~ 278 (838)
+|..+| +.+-++..+ . ..+++--...++.++.++. ++.|+.+|..+++...+.
T Consensus 143 lD~~tG--------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 143 LDAATG--------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EETTTC--------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EECCCC--------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 999998 555554433 1 1222211122566665553 799999999988766554
No 246
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.05 E-value=0.00033 Score=84.01 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=55.6
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEE-EEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE---EEEEeCCC-EE
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG-YI 511 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~-sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~-~l 511 (838)
+|+|+.||+ +|+.+-.+..+..... .+...|..+++|+.||.|+.||.+ |+++-.+..+.+.+ .....+|+ |+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 478999999 7887766665443222 456688899999999999999987 88877766553322 22246776 56
Q ss_pred EEEcCCCC
Q 003217 512 FTLANHGG 519 (838)
Q Consensus 512 ~S~S~Dgt 519 (838)
+..+..|.
T Consensus 534 ~~~~G~gg 541 (689)
T 1yiq_A 534 TFMAGWGG 541 (689)
T ss_dssp EEEECCCT
T ss_pred EEEecCCc
Confidence 65555444
No 247
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.98 E-value=0.00017 Score=79.59 Aligned_cols=90 Identities=7% Similarity=-0.221 Sum_probs=63.3
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 003217 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKMN 221 (838)
Q Consensus 152 ~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs----------~DGtIrvWd~~ 221 (838)
+|.|.|.++...... + . + |..| .++++|||+.||.+. .+++|.+||+.
T Consensus 47 ~vsvID~~t~~v~~~-----------------i-~-v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH-----------------S-L-G-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEETTTTEEEEE-----------------E-E-E-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEEECCCCeEEEE-----------------E-e-C-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 788999887654321 1 1 1 2446 699999999999997 37899999999
Q ss_pred CCccCCCCCcceeEEecccc-------ccEEEEEEecCCC-EEEeeC--CCcEEE--EECCC
Q 003217 222 ARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LWSGSE--GGGIKI--WPWEA 271 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~-------~~V~slafs~dG~-L~SgS~--DgtIrv--Wd~~~ 271 (838)
++ +...++.-+. ..-..++|||||+ |+.+.. +..|.+ +|+.+
T Consensus 105 T~--------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 TF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CC--------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 97 4555553220 1234789999997 776653 467888 98855
No 248
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.96 E-value=0.00013 Score=87.43 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=69.7
Q ss_pred eEEEEEcCCCc-E-EEEEC---CCeEEEEcCC-CC-eeeEeecCCccEEE-EEEcCCEEEEEee-C---CeEEEEeCCC-
Q 003217 422 TEALTTSIDGM-I-WTGGA---NGLLLQWDPN-GN-RLQDFQYLPFAVQC-LCTFGSQIWVGYM-N---GIVQVLDLEG- 488 (838)
Q Consensus 422 v~ala~S~dg~-l-~Sgs~---DgtIrlWD~~-g~-~l~tl~~H~~~V~s-ls~dG~~LasGs~-D---gtIrlWD~~g- 488 (838)
...+.+||||+ | ++.+. ++.|.+||++ ++ .++.+..+...+.. +..+|++|+.-+. + +.|.+||+++
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 34567889997 4 33332 2479999984 43 56777777666554 5678886665553 3 6899999874
Q ss_pred cc--cccccccccCEEEEEeCCCEEEEEcCCC---CeeeeecC
Q 003217 489 NL--LGGWVAHSSPVIKMAVGAGYIFTLANHG---GIRGWNVT 526 (838)
Q Consensus 489 ~~--i~~l~gH~~~V~sla~dg~~l~S~S~Dg---tIrlWdl~ 526 (838)
.. .+.+..|...+.++.+++++|+....++ .|++|++.
T Consensus 316 ~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 316 GPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33 4567777766557778888877655444 57788764
No 249
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=97.94 E-value=2.3e-05 Score=82.03 Aligned_cols=134 Identities=20% Similarity=0.296 Sum_probs=74.3
Q ss_pred eeEEEEEEeCCCCCCc---------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHH
Q 003217 553 KILAGTWNVGQGRASQ---------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~---------~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 623 (838)
.|-+.|||+....+.. +.+.++|.. .++|| |||||+... ..+.|
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l 55 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKD--HELDI--VGMQEVLHN-----------------------QFQDL 55 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHH--TTCSE--EEEESBCHH-----------------------HHHHH
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHH--cCCCE--EEEecCCHH-----------------------HHHHH
Confidence 3778999997665421 123334432 35664 589998631 12234
Q ss_pred hhhcCCCCCEEEEeeee----cccEEEEEEEecCCcCccCcee--eceee-----cccCcccCCCceeEEEEEE--cCeE
Q 003217 624 GKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVD--VAAVP-----CGFGRAIGNKGAVGLRVRV--YDRI 690 (838)
Q Consensus 624 ~~~l~~~~~y~~v~s~~----l~g~~l~vf~r~~~~~~i~~v~--~~~v~-----~G~~~~~gnKG~v~i~~~i--~~~~ 690 (838)
.+.| ..|..+.... -.|-.+.||.|++-.+.+..-. ....+ .|+. ...+++++.+.|.. .+..
T Consensus 56 ~~~l---~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~R~~~~~~~~~~~~~~~ 131 (267)
T 3g6s_A 56 RAGL---PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWD-AVCVRIATWAKFKDKATGKI 131 (267)
T ss_dssp HHHC---TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTT-CSSCCEEEEEEEEETTTCCE
T ss_pred HHhc---cCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCcccccccc-ccCcceEEEEEEEEcCCCCE
Confidence 4444 2354444222 2344467777765432221111 11000 1111 23467888888885 5789
Q ss_pred EEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 691 MCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 691 ~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
|+++|+||.... ...|.++.+.|.+.+
T Consensus 132 ~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 132 FMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp EEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999999998753 456777777776654
No 250
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=97.91 E-value=3e-05 Score=80.56 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=75.8
Q ss_pred eEEEEEEeCCCCCCcc---------cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHh
Q 003217 554 ILAGTWNVGQGRASQD---------ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG 624 (838)
Q Consensus 554 i~~~twNv~~~~~~~~---------~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 624 (838)
|-+.|||+....+... .+.++|.. .++|| |||||+... ..+.+.
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~ 53 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLK 53 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHH
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHH
Confidence 3578999986654321 23344442 34565 579998631 112333
Q ss_pred hhcCCCCCEEEEeeee---cccEEEEEEEecCCcCccCceee--ce----eecccCcccCCCceeEEEEEEc--CeEEEE
Q 003217 625 KILDDGSTFERVGSRQ---LAGLLIAVWVRKNLKDYVGDVDV--AA----VPCGFGRAIGNKGAVGLRVRVY--DRIMCF 693 (838)
Q Consensus 625 ~~l~~~~~y~~v~s~~---l~g~~l~vf~r~~~~~~i~~v~~--~~----v~~G~~~~~gnKG~v~i~~~i~--~~~~~F 693 (838)
+.+ .|..+.... -.+-.+++|.|++-.+.+..-.. .. ...+. +....++++.+++... +..+.+
T Consensus 54 ~~l----~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v 128 (257)
T 3l1w_A 54 AYT----TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLV 128 (257)
T ss_dssp HHS----SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEE
T ss_pred hcC----CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEE
Confidence 334 243333322 35567788888763322211111 10 01111 2234788888999884 689999
Q ss_pred EeccccCCcchHHHHHHHHHHHHHhc
Q 003217 694 VNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 694 v~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
+|+||.+.. -..|.++++.|.+.+
T Consensus 129 ~~~Hl~~~~--~~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 129 INVHLDHIS--AHARLAGMTVILEEL 152 (257)
T ss_dssp EEEECCSSC--HHHHHHHHHHHHHHT
T ss_pred EEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999998763 356888888887765
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.85 E-value=0.011 Score=61.08 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=49.1
Q ss_pred eEEEEEcCCC-cEEE-EECCCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEee-CCeEEEEeCC-Cccccccc
Q 003217 422 TEALTTSIDG-MIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 422 v~ala~S~dg-~l~S-gs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l~ 495 (838)
...+++++++ .|+. -...+.|.++|..|..+..+......-..+++++.+|+.+.. .+.|..+|.+ |+.+..+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 4467788864 5644 445678999999764433332222334577788888887764 5899999987 67666654
No 252
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=3.5e-05 Score=82.40 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=75.8
Q ss_pred eeEEEEEEeCCCCCCc-----------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHH
Q 003217 553 KILAGTWNVGQGRASQ-----------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~-----------~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (838)
.+-+.|||+....+.. +.+..+|.. .++| ||||||+... ..+
T Consensus 6 ~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~ 58 (298)
T 3mpr_A 6 SLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFLH-----------------------QLK 58 (298)
T ss_dssp EEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHH
T ss_pred cEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCHH-----------------------HHH
Confidence 4889999996554321 123334442 3567 5689998621 123
Q ss_pred HHhhhcCCCCCEEEEeeeec----ccEEEEEEEecCCcCccCcee--ec----eeecccCcccCCCceeEEEEEE--cCe
Q 003217 622 MIGKILDDGSTFERVGSRQL----AGLLIAVWVRKNLKDYVGDVD--VA----AVPCGFGRAIGNKGAVGLRVRV--YDR 689 (838)
Q Consensus 622 ~~~~~l~~~~~y~~v~s~~l----~g~~l~vf~r~~~~~~i~~v~--~~----~v~~G~~~~~gnKG~v~i~~~i--~~~ 689 (838)
.|.+.| ..|..++.... .|-.++||.|++-.+.+..-. .. ....|.. ..-+++++.+.|.. .+.
T Consensus 59 ~l~~~l---~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~g~ 134 (298)
T 3mpr_A 59 DMKEAL---PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDTGF 134 (298)
T ss_dssp HHHHHS---TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTTCC
T ss_pred HHHHhC---CCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCCCC
Confidence 444455 24555543332 344466776665432221111 00 0012222 12467888888884 678
Q ss_pred EEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 690 IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 690 ~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
.|+++|+||.... ...|.++.+.|.+.+
T Consensus 135 ~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 135 EFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp EEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 9999999998532 466777888887765
No 253
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=97.84 E-value=4.2e-05 Score=81.46 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred cCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHHHHHhc
Q 003217 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (838)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~I~~~l 719 (838)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999873 35667888888887754
No 254
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.79 E-value=0.0026 Score=75.91 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=48.9
Q ss_pred CeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE---EEEEeCCCEEE
Q 003217 440 GLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAGYIF 512 (838)
Q Consensus 440 gtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~~l~ 512 (838)
++|..||+ +|+.+-++... .++. .+..+|..++.|+.||.|++||++ |+++.++....+.+ .....+|+..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 78999999 78876665432 2222 356688899999999999999987 88877776443211 11236776443
No 255
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.76 E-value=5e-05 Score=78.46 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCEE
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 634 (838)
-+.|||+.+.....+.+.++|.. .++|| |+|||+...... ...+.+. . ..|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~~~~-------------------~~~~~~~-~----~gy~ 53 (256)
T 2jc4_A 2 KITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLDQDK-------------------FPAAALQ-M----MGWH 53 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSCGGG-------------------SCHHHHH-T----TTCE
T ss_pred EEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccchhc-------------------CCHhHHh-h----cCCe
Confidence 47899998654333556667764 45675 579998753210 0011121 1 2343
Q ss_pred EEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc----hHHHHHH
Q 003217 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE----AVNRRNA 710 (838)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~----~~~~Rn~ 710 (838)
.+....-+.-.++||.|..+. .++. ++.+......+..+.+.+. .+.++|+|+.+... ....|.+
T Consensus 54 ~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 54 CVWSGQKTYNGVAIVSRSVPQ----DVHF-----GLPALPDDPQRRVIAATVS--GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp EEEECCSSSCCEEEEESSCCE----EEEE-----SCTTSTTCCSCCEEEEEET--TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred EEECCCCcceEEEEEECCChH----Hhee-----cCCCCccCCcCcEEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 333222233346778887542 2221 2221111222223444553 79999999987643 4455666
Q ss_pred HHHHHHHh
Q 003217 711 DFDHVYRT 718 (838)
Q Consensus 711 d~~~I~~~ 718 (838)
.++.|.+.
T Consensus 123 ~~~~l~~~ 130 (256)
T 2jc4_A 123 WFAALTEF 130 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 256
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.74 E-value=0.0013 Score=72.67 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=64.0
Q ss_pred EcCCCcEEEEECCCeEEEEcCCCC---eeeEee------------cCCccEEEEEEcCCEEEEEee-C--------CeEE
Q 003217 427 TSIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM-N--------GIVQ 482 (838)
Q Consensus 427 ~S~dg~l~Sgs~DgtIrlWD~~g~---~l~tl~------------~H~~~V~sls~dG~~LasGs~-D--------gtIr 482 (838)
...++.++..+. ++|.+.|..+. .+.++. .+......+.+||++++++.. . +.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 444555665556 78888888432 222221 111122357789999887654 2 3566
Q ss_pred EEeCC-CcccccccccccCEEEEE--eCCCE-EEEEc-CCCCeeeeecCCCCC
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGY-IFTLA-NHGGIRGWNVTSPGP 530 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla--~dg~~-l~S~S-~DgtIrlWdl~s~~~ 530 (838)
++|++ .+.++.+.... ..++|+ +||++ +++.. .+++|.++|+.+...
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 99987 56777776543 355665 57874 55666 599999999876543
No 257
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=97.63 E-value=0.00023 Score=75.75 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=37.7
Q ss_pred cCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHHHHHhc
Q 003217 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (838)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~I~~~l 719 (838)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999998873 35677888888887654
No 258
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.62 E-value=0.0023 Score=69.37 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=48.8
Q ss_pred ccEEEEEEecCCCEE-Eee--CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 242 GPVLSLCISSYGDLW-SGS--EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 242 ~~V~slafs~dG~L~-SgS--~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
..+..|+++++|+++ +.. .++.++||.+.++ +...+.... . .. + -.-..+..++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~-----------------~---~~-~-~~~~~p~gv~ 73 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQS-----------------G---NA-I-ITFDTVLGIK 73 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCC-----------------S---SC-C-CCCSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcc-----------------c---Cc-c-cceeEeeEEE
Confidence 688999999999964 543 2344778877422 111111000 0 00 0 0123466778
Q ss_pred EcCCCCEEEEeC-------CCcEEEEeccCccEEEEEe
Q 003217 319 SDHSRAKVWSAG-------FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 319 s~~~~~~V~s~s-------~~tI~lWD~~tg~~l~~l~ 349 (838)
+++++ +||.+. ...|.+||+.++++++++.
T Consensus 74 ~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~ 110 (343)
T 2qe8_A 74 SDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY 110 (343)
T ss_dssp ECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEE
T ss_pred EcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE
Confidence 87765 455543 3578999999998776664
No 259
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.57 E-value=0.00026 Score=72.05 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=61.7
Q ss_pred eeEEEEEEeCCCCCCc--ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCC
Q 003217 553 KILAGTWNVGQGRASQ--DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDG 630 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~--~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~ 630 (838)
.+-+.|||+++..... +.+.++|.. .++|| |+|||+......+ . .+ .+ .+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~~ 58 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-KG 58 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-TT
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-CC
Confidence 3788999998665432 456677764 35665 5799986431100 0 00 01 12
Q ss_pred CCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 631 STFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 631 ~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
..|.......-.+-.+++|.|.++...+..+. .. ...-.+.+++.+.+..+.++|+|+.....
T Consensus 59 y~~~~~~~~~~~~~Gvail~r~~~~~~~~~~~-----~~-----~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 59 WRKIYQANGKQKKAGVAILVSDKTDFKPTKIK-----RD-----KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp CCEEEEECCSSSSCCEEEEECTTCCCEEEEEE-----EC-----TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCeEEEccCCCCCceEEEEEeCCCCcccccee-----Ec-----CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 23322221111122567888887532222211 11 11225677888888999999999987653
No 260
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=97.57 E-value=0.00018 Score=77.62 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=40.1
Q ss_pred ccCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHHHHHhc
Q 003217 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (838)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~I~~~l 719 (838)
...+||.+.+++.+.+..+.++|+||.+.. .....|.++.+.|.+.+
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998864 34788899998887765
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.50 E-value=0.053 Score=55.89 Aligned_cols=105 Identities=9% Similarity=-0.047 Sum_probs=63.6
Q ss_pred EEEEEcC-CCcEEEEEC---CCeEEEEcCCCCeeeEee-cCCccEEEEEE--cCCEEEEEee-CCeEEEEeCCCcccccc
Q 003217 423 EALTTSI-DGMIWTGGA---NGLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 423 ~ala~S~-dg~l~Sgs~---DgtIrlWD~~g~~l~tl~-~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~g~~i~~l 494 (838)
..+++++ ++.|+.+.. .+.|..++.+|+..+.+. .....-..++. ++++|+.+.. .+.|.++|..+.....+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 4577777 466655543 357888888776554443 22234456655 5677777664 68999999986432222
Q ss_pred cccccCEEEEEeCCCEEEEEc-CCCCeeeeecCC
Q 003217 495 VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S-~DgtIrlWdl~s 527 (838)
.........|+.+++.++.+. ..+.|.+.+..+
T Consensus 205 ~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 205 LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 111233456777777776655 456787777543
No 262
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=97.41 E-value=0.00058 Score=70.50 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=25.6
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
+-+.|||+++.....+.+.++|.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 568899998765444556667663 35665 57999865
No 263
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.41 E-value=0.00027 Score=72.85 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=68.7
Q ss_pred eeEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCC
Q 003217 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~ 632 (838)
.|-+.|||+++.+...+.+..||.. .++|| |+|||....... .+.. ...
T Consensus 19 ~lri~s~Nv~~~~~~~~~l~~~i~~--~~~DI--v~lQE~~~~~~~-----------------------~~~~----~~g 67 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAAT--RKAAI--ALIQEPYVGGAK-----------------------SMKG----FRG 67 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHH--HTCSE--EEEESCCC-----------------------------CC----CSS
T ss_pred ceeeeeeeccccHHHHHHHHHHHhh--cCCCE--EEEEcccccCCc-----------------------cccC----CCc
Confidence 3789999999765545567778874 45564 689998642110 0000 112
Q ss_pred EEEEeee----ecccEEEEEEEec-CCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHH
Q 003217 633 FERVGSR----QLAGLLIAVWVRK-NLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (838)
Q Consensus 633 y~~v~s~----~l~g~~l~vf~r~-~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (838)
|...... .-.|+ +||.++ .+. + . . +. ..-.+|.+.+.+...+..+.|+|+|+..... .++
T Consensus 68 y~~~~~~~~~~~~~Gv--aIl~~~~~~~--~---~--~----~~-~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~ 132 (245)
T 1wdu_A 68 VRVFQSTAQGDGTVKA--AIAVFDHDLD--V---I--Q----YP-QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IES 132 (245)
T ss_dssp CEEEECCCCTTCCCCE--EEEECCSSCE--E---E--E----CT-TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHH
T ss_pred ceEeccccccCCCCCe--EEEEECCCcc--e---E--E----ec-ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHH
Confidence 3332211 11343 566654 332 1 0 1 11 1236788899998888899999999997653 344
Q ss_pred HHHHHHHHHHh
Q 003217 708 RNADFDHVYRT 718 (838)
Q Consensus 708 Rn~d~~~I~~~ 718 (838)
+.+.+..+++.
T Consensus 133 ~~~~l~~~~~~ 143 (245)
T 1wdu_A 133 YLEQIKRVERK 143 (245)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55566665553
No 264
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.26 E-value=0.0002 Score=74.74 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=39.4
Q ss_pred CCCEEEEeeeecc----cEEEEEEEecCCcCccCceeeceeecc-c--CcccCCCceeEEEEEEc---CeEEEEEecccc
Q 003217 630 GSTFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCG-F--GRAIGNKGAVGLRVRVY---DRIMCFVNCHFA 699 (838)
Q Consensus 630 ~~~y~~v~s~~l~----g~~l~vf~r~~~~~~i~~v~~~~v~~G-~--~~~~gnKG~v~i~~~i~---~~~~~Fv~~HLa 699 (838)
+..|..+.+...+ +....++.|++....+ +.....-+ . +...-......+.|... +..|.++|+||.
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~---~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~ 136 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVL---DTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSA 136 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEE---EEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCC
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEec---CceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCC
Confidence 3457777665543 4666777777643221 11111111 0 01111356677788765 579999999999
Q ss_pred CCc
Q 003217 700 AHL 702 (838)
Q Consensus 700 a~~ 702 (838)
+..
T Consensus 137 ~~~ 139 (260)
T 2a40_B 137 PSD 139 (260)
T ss_dssp GGG
T ss_pred CCC
Confidence 643
No 265
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.25 E-value=0.00031 Score=72.47 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCC
Q 003217 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (838)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~ 632 (838)
+-+.|||+.+...... .+.++|.. .++|| |+|||+......+ .+.+.+.. .
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~~--------------------~~~l~~~~----g 53 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQEADL--------------------SADMKNPH----G 53 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCCGGGC--------------------CHHHHSGG----G
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecchhhcc--------------------Chhhcccc----C
Confidence 5688999986533222 36666664 45675 6799997532100 01121111 2
Q ss_pred EEEEee--eecccEEEEEEEecCCcCccCceeeceeecccCc-ccCCCceeEEEEEEcCeEEEEEeccccCCcch---HH
Q 003217 633 FERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA---VN 706 (838)
Q Consensus 633 y~~v~s--~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~---~~ 706 (838)
|..+.. ..-+.-.++||.|..+. .+.. ++.. ...++|. .+.+.+ ..+.++|+||.+.... ..
T Consensus 54 y~~~~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~r-~~~~~~--~~~~v~~~h~~~~~~~~~r~~ 121 (259)
T 2jc5_A 54 MHGHWHCAEKRGYSGVAVYSKRKPD----NVQI-----GMGIEEFDREGR-FVRCDF--GRLSVISLYLPSGSSAEERQQ 121 (259)
T ss_dssp CEEEEECCSSTTCCCEEEEESSCCS----EEEE-----SCSCHHHHTTCC-EEEEEE--TTEEEEEEECCCCTTCHHHHH
T ss_pred CeEEEeccCCCCcceEEEEEecCce----eEEe-----CCCCCccCCCCe-EEEEEc--CCEEEEEEeccCCCCCcHHHH
Confidence 332222 22222346778888653 2221 2211 1123443 344444 4799999999887542 22
Q ss_pred HHHHHHHHHHHh
Q 003217 707 RRNADFDHVYRT 718 (838)
Q Consensus 707 ~Rn~d~~~I~~~ 718 (838)
.|.+.++.|.+.
T Consensus 122 ~~~~~~~~l~~~ 133 (259)
T 2jc5_A 122 VKYRFLDAFYPM 133 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 233445555443
No 266
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.19 E-value=0.0002 Score=75.56 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=25.1
Q ss_pred eeEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCc
Q 003217 553 KILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~~ 595 (838)
.+-+.|||+.+...... .+.++|.. .++| ||+|||+...
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~ 67 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCS 67 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecc
Confidence 48899999986432212 25666653 3566 5689998653
No 267
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.14 E-value=0.016 Score=65.02 Aligned_cols=116 Identities=4% Similarity=-0.082 Sum_probs=73.0
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee----------CCCcE
Q 003217 201 EASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (838)
Q Consensus 201 ~dg~~LaSGs~D-----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtI 264 (838)
++++.++..... ++|-+.|..+. +.+.++.--..+ .|++||||+ |+.+. .+++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 566777776653 69999999986 455555433446 799999998 66554 47799
Q ss_pred EEEECCCcceeeecCCC-ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEecc
Q 003217 265 KIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDAR 340 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~-~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~ 340 (838)
.++|..+.+..-.+... .... .. ...-..+++++++.+++.+. .++|.+.|+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~-----------------~~------g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRF-----------------LV------GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCC-----------------CB------SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred EEEECCCCcEEEEEECCCcccc-----------------cc------CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 99999775432111100 0000 00 00112345677788887764 3579999999
Q ss_pred CccEEEEEe
Q 003217 341 TRELLKVFN 349 (838)
Q Consensus 341 tg~~l~~l~ 349 (838)
+++.++++.
T Consensus 209 t~kvv~~I~ 217 (426)
T 3c75_H 209 GKTFDRMLD 217 (426)
T ss_dssp TTEEEEEEE
T ss_pred CCeEEEEEE
Confidence 999877664
No 268
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.12 E-value=0.065 Score=56.08 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred cEEEEEEecCCCEEEee-C--CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE
Q 003217 243 PVLSLCISSYGDLWSGS-E--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (838)
Q Consensus 243 ~V~slafs~dG~L~SgS-~--DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (838)
....|+|++||.|+.++ . ++.|++.|+.+++-.-++.... .....-++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----------------------------~~fgeGi~~ 73 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD----------------------------SYFGEGLTL 73 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT----------------------------TCCEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC----------------------------CcceEEEEE
Confidence 46899999998876443 2 6899999998765322211000 001111222
Q ss_pred cCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcc
Q 003217 320 DHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (838)
Q Consensus 320 ~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (838)
. +.++|.+.+ +.+.++|..|.+.+.++... .. .
T Consensus 74 ~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----------------------------~-------------- 108 (266)
T 2iwa_A 74 L--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----------------------------D-------------- 108 (266)
T ss_dssp E--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----------------------------S--------------
T ss_pred e--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----------------------------C--------------
Confidence 2 457777774 57999999999887766421 00 0
Q ss_pred eeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcC-CCCeeeEeecC--Cc---cEEEEEEcCC
Q 003217 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYL--PF---AVQCLCTFGS 470 (838)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H--~~---~V~sls~dG~ 470 (838)
+ ..+++|| +++.+..+++|.++|. +.+.++++.-. .. .++.+.+.+.
T Consensus 109 -------g-------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 109 -------G-------------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp -------C-------------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred -------e-------------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 0 0012233 3665556789999999 56777776531 12 2445544334
Q ss_pred EEEEEe-eCCeEEEEeCC-Cccccccccc-----------c--cCEEEEEe--CCCE-EEEEcCCCCeeeeecCC
Q 003217 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH-----------S--SPVIKMAV--GAGY-IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 471 ~LasGs-~DgtIrlWD~~-g~~i~~l~gH-----------~--~~V~sla~--dg~~-l~S~S~DgtIrlWdl~s 527 (838)
+||+.. .++.|.+-|++ ++.+..+... . ...+.|++ +++. ++++.....|..-++..
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 677766 47899999987 6765555321 1 35577875 4554 55777788887777654
No 269
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.06 E-value=0.038 Score=57.54 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=101.7
Q ss_pred ccEEEEEEecCCCEE-EeeCCC--cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 242 GPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 242 ~~V~slafs~dG~L~-SgS~Dg--tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
.....|.|+ ++.|+ |++.+| .|++.|+++++-..+..... ..-.--++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------------------~~FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------------------RYFGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------------------------TCCEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------------------------ccceeEEE
Confidence 446789998 67765 777766 99999998865332221100 00011122
Q ss_pred EcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc
Q 003217 319 SDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (838)
Q Consensus 319 s~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~ 396 (838)
. .+.+||.+.+ +.+.++|..|.+.++++...+.-
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG------------------------------------------ 129 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG------------------------------------------ 129 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC------------------------------------------
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc------------------------------------------
Confidence 2 2567887774 57899999999988877532100
Q ss_pred ceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec--CCcc---EEEEEEcCC
Q 003217 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFA---VQCLCTFGS 470 (838)
Q Consensus 397 ~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~---V~sls~dG~ 470 (838)
- .++. +++.|+....++.|.++|. +.+.++++.- +..+ ++-+.+.+.
T Consensus 130 -------~-------------------glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G 182 (262)
T 3nol_A 130 -------W-------------------GLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDG 182 (262)
T ss_dssp -------C-------------------CEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETT
T ss_pred -------e-------------------EEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECC
Confidence 0 0111 1223555555677999999 6787777653 2222 344544333
Q ss_pred EEEEEe-eCCeEEEEeCC-Cccccccccc------------ccCEEEEEeC--CCEEEEEc
Q 003217 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------SSPVIKMAVG--AGYIFTLA 515 (838)
Q Consensus 471 ~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~~~V~sla~d--g~~l~S~S 515 (838)
+||+.. .+..|.+.|++ |+.+..+... .+..+.||.+ ++.++-.+
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 677766 58899999987 6654443321 1345778864 45555443
No 270
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.04 E-value=0.00037 Score=75.12 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=61.1
Q ss_pred eeEEEEEEeCCCCCC-cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCC
Q 003217 553 KILAGTWNVGQGRAS-QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (838)
Q Consensus 553 ~i~~~twNv~~~~~~-~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~ 631 (838)
.+-+.|||+.+.... ...+.++|.. .++|| |+|||+...... ....+.+.. +.
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~--------------------~~~~l~~~~--gy 114 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKCSENK--------------------LPAELQELP--GL 114 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCCCC---------------------------------CC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccCchhh--------------------ccHHHHhcC--CC
Confidence 488999999854321 1225666663 35665 689998643210 001111111 22
Q ss_pred CEEEEee-e-ecccEEEEEEEecCCcCccCceeeceeecccCc-ccCCCceeEEEEEEcCeEEEEEeccccCCcc---hH
Q 003217 632 TFERVGS-R-QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE---AV 705 (838)
Q Consensus 632 ~y~~v~s-~-~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~---~~ 705 (838)
.|..... . .-+.-.++||.|..+.. +.. ++.. .....|- .+.+.+ ..|.++|+|+..... ..
T Consensus 115 ~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~-----~~~~~~~~~~~r-~l~~~~--~~~~v~~vh~p~~~~~~~~~ 182 (318)
T 1hd7_A 115 SHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY-----GIGDEEHDQEGR-VIVAEF--DSFVLVTAYVPNAGRGLVRL 182 (318)
T ss_dssp CEEEEECC-----CCCEEEEESSCCSE----EEE-----SCSCGGGSSSSC-EEEEEC--SSCEEEEEECCCCCGGGTTH
T ss_pred ceEEEecCCCCCccceEEEEEcCCcee----EEe-----cCCCcccCCCCc-EEEEEc--CCEEEEEEEcCCCCCccccH
Confidence 1222221 1 22212467788876431 211 2211 1223343 233433 479999999976643 23
Q ss_pred HHHHHHHHHHHHhc
Q 003217 706 NRRNADFDHVYRTM 719 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l 719 (838)
+.|.+.++.|...+
T Consensus 183 ~~r~~~~~~l~~~l 196 (318)
T 1hd7_A 183 EYRQRWDEAFRKFL 196 (318)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 271
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.01 E-value=0.0012 Score=74.97 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=26.0
Q ss_pred eeEEEEEEeCCCCCCc----ccccccccCCCCCceEEEEEeecccC
Q 003217 553 KILAGTWNVGQGRASQ----DALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~----~~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
.|-+.||||++..... +.+.+||.. .++|| |||||+..
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pDI--VcLQEtk~ 190 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA--EKPDV--LCLQETKL 190 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCSE--EEEECCCC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH--cCCCE--EEEEeccc
Confidence 4889999998643211 357777774 35664 68999865
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.94 E-value=0.093 Score=61.51 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=42.2
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccc--ccEEEEEEecCCCEEEee------CCCcEEEEECCCccee
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHR--GPVLSLCISSYGDLWSGS------EGGGIKIWPWEAIEKA 275 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--gH~--~~V~slafs~dG~L~SgS------~DgtIrvWd~~~~~~~ 275 (838)
|+.++.|+.+..+|..+| +.+-... .+. ..+++--.-.+|.++.++ .++.|+.+|.++++..
T Consensus 124 V~v~t~dg~l~AlDa~TG--------~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG--------ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCC--------CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 889999999999999998 4443321 211 022211111256776655 3899999999988776
Q ss_pred eecC
Q 003217 276 LSLK 279 (838)
Q Consensus 276 ~~~~ 279 (838)
.+..
T Consensus 196 W~~~ 199 (599)
T 1w6s_A 196 WRAY 199 (599)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
No 273
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.94 E-value=0.064 Score=63.78 Aligned_cols=111 Identities=9% Similarity=0.054 Sum_probs=58.7
Q ss_pred CCeEEEEeCC-CcccccccccccCE-EEEEeCCCEEEEEcCCCCeeeeecCCCCCCchhhhh-hhhccccccccccceee
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPV-IKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCK-ELAGKEFLYTRMENLKI 554 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V-~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~-~l~~r~~~y~~~~~~~i 554 (838)
+|.|..||+. |+.+=....+.... ..+...+..++.++.|+.++.||..+...+-.+... .....-..|...+. +
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~--~ 514 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR--Q 514 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE--E
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE--E
Confidence 4889999986 66543333222221 234567889999999999999998775544322110 01111112223333 4
Q ss_pred EEEEEEeCCCCCC--cccccccccCCCCCceEEEEEeec
Q 003217 555 LAGTWNVGQGRAS--QDALISWLGSAASDVGIVVVGLQE 591 (838)
Q Consensus 555 ~~~twNv~~~~~~--~~~l~~wl~~~~~~~di~vig~QE 591 (838)
|+..-.-.+.... ..+|..|+... ..-.|+++.+..
T Consensus 515 yva~~~G~g~~~~~~~~~~~~~~~~~-~~~~i~~~~l~g 552 (668)
T 1kv9_A 515 YVAIMAGWGGVATLTGGESMNLPGMK-NRSRLLVFALDG 552 (668)
T ss_dssp EEEEEECCCSHHHHHCCGGGGSTTCC-CCCEEEEEEETC
T ss_pred EEEEEecCCCccccccccccccccCC-CCCeEEEEEcCc
Confidence 5544332111110 12345666533 233688888865
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.92 E-value=0.14 Score=60.92 Aligned_cols=77 Identities=25% Similarity=0.448 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccE-EEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccccc----cCEEEEEeCCC-
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS----SPVIKMAVGAG- 509 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V-~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~----~~V~sla~dg~- 509 (838)
.+|.|..||+ +|+.+-.+..+.... ..+...|..|++|+.|+.|++||.+ |+.+..+.... .++. ...+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~-~~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT-FELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE-EEECCEE
Confidence 3578999999 787765554332221 2456688899999999999999987 78776665443 2332 235666
Q ss_pred EEEEEc
Q 003217 510 YIFTLA 515 (838)
Q Consensus 510 ~l~S~S 515 (838)
+++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 455444
No 275
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.88 E-value=0.057 Score=62.96 Aligned_cols=69 Identities=7% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccc--cEEEEEEecCCCEEEeeC------CCcEEEEECCCc
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAI 272 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~--~V~slafs~dG~L~SgS~------DgtIrvWd~~~~ 272 (838)
++.|+.++.|+.+..+|..+| +.+-+. .+|.. .+++--.-.++.++.++. ++.|..+|.+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--------~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--------KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--------CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 578899999999999999988 444332 22211 222111112567766654 799999999988
Q ss_pred ceeeecC
Q 003217 273 EKALSLK 279 (838)
Q Consensus 273 ~~~~~~~ 279 (838)
+...+..
T Consensus 187 ~~~W~~~ 193 (571)
T 2ad6_A 187 ELKWRAF 193 (571)
T ss_dssp CEEEEEE
T ss_pred cEEEEEc
Confidence 7665543
No 276
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=96.69 E-value=0.00092 Score=69.17 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.0
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeeccc
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~ 593 (838)
|-+.|||+++.+...+.|.+||.. .++|| ++|||..
T Consensus 8 mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred ceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 678999999876655568888885 35565 5799974
No 277
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.68 E-value=0.066 Score=55.79 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=92.6
Q ss_pred ceeEEEEecCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE-E
Q 003217 133 CFLRTIVCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-G 209 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS-G 209 (838)
.|-+-|..+++.||.+ .++.|++.|+++...... . .+..+|- -.++++ ++.||. .
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~---------~--l~~~~Fg---------eGit~~--g~~Ly~lt 112 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWM---------E--RLGNIFA---------EGLASD--GERLYQLT 112 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEE---------E--ECTTCCE---------EEEEEC--SSCEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeE---------E--CCCCcce---------eEEEEe--CCEEEEEE
Confidence 4667778888999984 467899999988654432 0 1111121 114443 444454 4
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
..++.+.++|.++. +.+.++.--.. ...+++||+ |+.+..++.|.++|.++.+..-++..
T Consensus 113 w~~~~v~V~D~~Tl--------~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-------- 173 (268)
T 3nok_A 113 WTEGLLFTWSGMPP--------QRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-------- 173 (268)
T ss_dssp SSSCEEEEEETTTT--------EEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC--------
T ss_pred ccCCEEEEEECCcC--------cEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe--------
Confidence 57889999999986 55666542211 233445666 77655688999999877442211110
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEe
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFN 349 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~ 349 (838)
...+. +.....-+... +++||...+ ..|.+-|.+||+++..+.
T Consensus 174 -------------~~~g~---~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 174 -------------KLRGQ---PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp -------------EETTE---ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred -------------CCCCc---ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 00000 01112223333 336887664 579999999999988764
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.64 E-value=0.24 Score=50.94 Aligned_cols=177 Identities=13% Similarity=0.108 Sum_probs=103.8
Q ss_pred cc--cccEEEEEEecCCCEE-EeeCC--CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003217 239 AH--RGPVLSLCISSYGDLW-SGSEG--GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (838)
Q Consensus 239 gH--~~~V~slafs~dG~L~-SgS~D--gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (838)
.| ...+..|.|++ +.|+ |.+.+ ..|++.|+++++-..+..... . .-
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----------------~-----------~f 66 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----------------P-----------YF 66 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------------T-----------CC
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------------C-----------cc
Confidence 45 35678999987 6765 66665 499999998865332221100 0 00
Q ss_pred eEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeE
Q 003217 314 IKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 314 v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
.--++. .+.+||...+ +.+.++|..|.++++++...+.-
T Consensus 67 geGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G------------------------------------- 107 (243)
T 3mbr_X 67 GAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG------------------------------------- 107 (243)
T ss_dssp EEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-------------------------------------
T ss_pred eeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-------------------------------------
Confidence 111222 2467777774 57899999999988877531100
Q ss_pred eecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec--CCc---cEEEE
Q 003217 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCL 465 (838)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~---~V~sl 465 (838)
..++. .++.|+.+..++.|.++|. +.+.++++.- +.. .++-+
T Consensus 108 -------------------------------wglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 108 -------------------------------WALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp -------------------------------CEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred -------------------------------eEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 01111 1234666566778999999 6777777764 222 34455
Q ss_pred EEcCCEEEEEe-eCCeEEEEeCC-Cccccccccc------------c-cCEEEEEeC--CCEEEEEc
Q 003217 466 CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------S-SPVIKMAVG--AGYIFTLA 515 (838)
Q Consensus 466 s~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~-~~V~sla~d--g~~l~S~S 515 (838)
...+.+|++.. .+..|.+-|++ |+.+..+... . +..+.||.| ++.++-.+
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 45444566665 57899999987 6654443311 1 345778864 44554333
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.64 E-value=0.99 Score=49.46 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=61.2
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~ 222 (838)
.|+.+..+.|+..++...... ..+.+......+++++. +.+.|+-...+.|..+++++
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~---------------------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYT---------------------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecCccceeeccCCCcEE---------------------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 555566678888887542211 01111335778999975 55666766778999999987
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEECCC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~~ 271 (838)
+ .....+.........|++++. |.| |+-+..+.|.+.++++
T Consensus 148 ~--------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 148 S--------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp C--------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred C--------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 5 211112222234467899975 455 5666677888877754
No 280
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.61 E-value=0.001 Score=69.27 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=24.9
Q ss_pred eEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
|-+.|||+++...... .+.+||.. .++|| |+|||+..
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~ 41 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKA 41 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCS
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEeccc
Confidence 6788999987543222 46777764 35565 57999864
No 281
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.59 E-value=0.16 Score=53.80 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=63.5
Q ss_pred eEEEEEcCCCc-EEEE-ECCCeEEEEcCCCC---eeeEeecCCccEEEEEEc--CCEEEEEee-----------CCeEEE
Q 003217 422 TEALTTSIDGM-IWTG-GANGLLLQWDPNGN---RLQDFQYLPFAVQCLCTF--GSQIWVGYM-----------NGIVQV 483 (838)
Q Consensus 422 v~ala~S~dg~-l~Sg-s~DgtIrlWD~~g~---~l~tl~~H~~~V~sls~d--G~~LasGs~-----------DgtIrl 483 (838)
...+++++||. |+.+ +.++.|.++++.+. ..+.+..... ...++.| |. ||++.. .+.|..
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEE
Confidence 34689999986 6655 45578999998542 1222221122 4556664 54 666553 367899
Q ss_pred EeCCCcccccccccc----cCEEEEEe-CCCEEEEEcCCCCeeeeecC
Q 003217 484 LDLEGNLLGGWVAHS----SPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 484 WD~~g~~i~~l~gH~----~~V~sla~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
+|..|+.+..+.... ..+.+++. +++..++....+.|.++++.
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 999888776665442 34566654 44444555677788888754
No 282
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.53 E-value=0.023 Score=59.47 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=79.1
Q ss_pred eEEEEEcCCCcEEEEEC---CCeEEEEcC-CCCeeeEeecCC-ccEEEEEEcCCEEEEEee-CCeEEEEeCC-Ccccccc
Q 003217 422 TEALTTSIDGMIWTGGA---NGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~---DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (838)
...+++++|++|+.++. +++|++.|+ +|+.++++.... .....++++|++||.+.. ++.|.++|.+ .+.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45688999889887664 578999999 799888875322 233467778888888774 8899999987 5677766
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
..-...=+.++.||+.++.+..+++|.+.|..+...
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE
T ss_pred ECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE
Confidence 422122256888988777666788899998766443
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.52 E-value=0.49 Score=55.13 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCeEEEEeCC-CcccccccccccCEE--EEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVI--KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~--sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+|.|..||+. |+.+=....+. .++ .+...+..++.++.|+.++.||.++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 6889999986 66542222221 121 1345677888899999999999876544
No 284
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.47 E-value=0.31 Score=56.44 Aligned_cols=259 Identities=11% Similarity=0.047 Sum_probs=138.5
Q ss_pred cCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEE-c-CCCCEEEEEe------
Q 003217 141 TEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-D-EASGVVWSGH------ 210 (838)
Q Consensus 141 ~~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~-s-~dg~~LaSGs------ 210 (838)
+++.||+.. ++.|.+-|+++...... . ..| . ......+++ + |++++|+.++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~i------------i-~ip-----~-g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAI------------L-EIP-----N-AKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEE------------E-ECS-----S-CCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeE------------E-eCC-----C-CCCCcceeeeecCCCcEEEEeccccccc
Confidence 577889854 45799999987654321 0 011 0 224566777 5 8999999984
Q ss_pred ------------CCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-EEEeeCC---------------
Q 003217 211 ------------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEG--------------- 261 (838)
Q Consensus 211 ------------~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~D--------------- 261 (838)
+++.+-+.|.++. +...++. +- + -..++++|||+ +++.+.+
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~--------~v~~qI~Vgg-~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKW--------EVAWQVLVSG-N-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTT--------EEEEEEEESS-C-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCCCcccccccccCceEEEEECCCC--------eEEEEEEeCC-C-ccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 4458889998875 3333322 11 2 24578999998 5565544
Q ss_pred CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeec-CCeEEEEEcCCCCEEEEeC--CCcEEEEe
Q 003217 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT-SDIKNLLSDHSRAKVWSAG--FLSFALWD 338 (838)
Q Consensus 262 gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s-~~v~~las~~~~~~V~s~s--~~tI~lWD 338 (838)
..|.|-|+...+.... .+.... .-.=+.++.+......-+..++. .....+.++++|..++.++ ..+|.++|
T Consensus 231 d~v~V~~~~~~~~~v~---~Gk~~~--i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIA---AGDYQE--LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp EEEEEEEHHHHHHHHH---HTCSEE--ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ceEEEeeccceeEecc---CCCeeE--ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 2466666543221100 000000 00011233332100000111211 1234567788888777765 46899999
Q ss_pred ccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccC
Q 003217 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (838)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (838)
+.+.+.. +. +.. +. ... +.+. ..-
T Consensus 306 ~~~~~~~--~~--~~l--------------~~------------~~~-------------v~~~-------------v~v 329 (595)
T 1fwx_A 306 VTRFDAV--FY--ENA--------------DP------------RSA-------------VVAE-------------PEL 329 (595)
T ss_dssp GGGHHHH--HH--SCC--------------CG------------GGG-------------EEEC-------------CBC
T ss_pred Ccccccc--cc--ccc--------------Cc------------ccc-------------eEEE-------------cCC
Confidence 8764310 00 000 00 000 0000 001
Q ss_pred CCceEEEEEcCCCcEEE-EECCCeEEEEcC-C----------CCeeeEeecCCccE--EE-----EEEcCCEEEEEee--
Q 003217 419 NRRTEALTTSIDGMIWT-GGANGLLLQWDP-N----------GNRLQDFQYLPFAV--QC-----LCTFGSQIWVGYM-- 477 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~S-gs~DgtIrlWD~-~----------g~~l~tl~~H~~~V--~s-----ls~dG~~LasGs~-- 477 (838)
......++|++||.+++ .--|++|.+||+ + .+.++++..|-.+- .. +.+||++|+++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 12244678999997654 446899999998 5 35667776665432 21 2468999999763
Q ss_pred -CCe----------EEEEeCCCc
Q 003217 478 -NGI----------VQVLDLEGN 489 (838)
Q Consensus 478 -Dgt----------IrlWD~~g~ 489 (838)
|+. -+|.|++|.
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSS
T ss_pred ccccccCCCCCCCcceEEEcCCC
Confidence 443 288888753
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.46 E-value=1.2 Score=47.27 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g 223 (838)
|+.+..+.|+..|+....... . +........+++++++ .+.|+-..++.|..+++++.
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~------------------~---~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~ 62 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTS------------------L---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEE------------------E---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred EEEECCCeEEEEECCCcceEe------------------h---hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCC
Confidence 555667789999986532110 0 1113356789999865 56666667789999998761
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEECCC
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~~ 271 (838)
.. .. .....+...-....+|++++. +.| |+-...+.|.+.++++
T Consensus 63 ~~--~~--~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 63 HG--VS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC--Cc--ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 00 00 111122222234578999974 456 5667788999988764
No 286
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.44 E-value=0.1 Score=54.22 Aligned_cols=160 Identities=9% Similarity=0.125 Sum_probs=93.1
Q ss_pred ceeEEEEecCCEEEEec--C--CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 133 CFLRTIVCTEEQLWAGG--E--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~--d--~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.|-+-|..+++.||.++ + +.|++.|++++..... -..+..+|- -.+++ +++.||.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------~~l~~~~Fg---------eGit~--~g~~ly~ 101 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQ----------IELGKRYFG---------EGISD--WKDKIVG 101 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEE----------EECCTTCCE---------EEEEE--ETTEEEE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEE----------EecCCccce---------eEEEE--eCCEEEE
Confidence 46677777777999754 4 3899999988654332 000111121 11333 3556666
Q ss_pred Ee-CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
.. .++.+.++|.++. +.+.++.--. ....+++||+ |+....++.|.++|.++.+..-+...
T Consensus 102 ltw~~~~v~v~D~~t~--------~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V------ 164 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNL--------RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV------ 164 (262)
T ss_dssp EESSSSEEEEEETTTC--------CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC------
T ss_pred EEeeCCEEEEEECccC--------cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe------
Confidence 65 5789999999986 5555554211 2234556776 77655577899999877432211110
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEec
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~ 350 (838)
..++. +-....-+... +++||...+ +.|.+.|.+||+++.++..
T Consensus 165 ---------------~~~g~---~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 165 ---------------TAHGE---ELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ---------------EETTE---ECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ---------------ccCCc---cccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 00000 01112223332 347887764 5799999999999887753
No 287
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.39 E-value=0.65 Score=52.05 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=48.5
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEecc--cc-ccEEEEEEecCCC-EEEee------
Q 003217 196 CMVGDEASGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQA--HR-GPVLSLCISSYGD-LWSGS------ 259 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~D------GtIrvWd~~~g~~~~~~~~~~~~~l~g--H~-~~V~slafs~dG~-L~SgS------ 259 (838)
-+.+.|+| +++|...+ |.|-+.|.++. +.+.+|.- +. .--..+.|+|+++ ++|..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC--------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC--------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence 45677888 77776666 78999999886 56667752 22 1233578899998 55654
Q ss_pred -------------CCCcEEEEECCCc
Q 003217 260 -------------EGGGIKIWPWEAI 272 (838)
Q Consensus 260 -------------~DgtIrvWd~~~~ 272 (838)
.+.+|.+||+.+.
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred cccccchhhhhhccCCEEEEEECCCC
Confidence 3789999999764
No 288
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.33 E-value=0.27 Score=55.14 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=44.2
Q ss_pred EEEEEc--CCCCEEEE-EeCCCcEEEEECCCCccCCCCCcceeEEec--------cccccEEEEEEecCCCEEEeeCC--
Q 003217 195 MCMVGD--EASGVVWS-GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEG-- 261 (838)
Q Consensus 195 ~~la~s--~dg~~LaS-Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------gH~~~V~slafs~dG~L~SgS~D-- 261 (838)
+|.+++ +++++|+. |-.+++|.+.|+.+.. ...+...+++ |-+ .-..+..+|+|-++|+..+
T Consensus 85 ~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p----~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~ 159 (462)
T 2ece_A 85 LCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP----REPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEE 159 (462)
T ss_dssp GSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCT----TSCEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETT
T ss_pred cccccCCCccCCEEEEccCCCCeEEEEECCCCC----CCceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcC
Confidence 444556 67766555 5677899999987631 1112333331 111 2345778899932454444
Q ss_pred ----CcEEEEECCCcc
Q 003217 262 ----GGIKIWPWEAIE 273 (838)
Q Consensus 262 ----gtIrvWd~~~~~ 273 (838)
+.|-+.|.++.+
T Consensus 160 g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 160 GEGPGGILMLDHYSFE 175 (462)
T ss_dssp SCSCCEEEEECTTTCC
T ss_pred CCCCCeEEEEECCCCe
Confidence 789999987654
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.30 E-value=1.6 Score=47.06 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEE
Q 003217 192 SSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd 268 (838)
..+..+++++. +.+.|+-...+.|..++++++. .............+|++++. |.| |+-+..+.|.+.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC--------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 35788999965 4566666678899999998752 11112222234568999975 455 6777778899988
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+++
T Consensus 145 ~dG 147 (349)
T 3v64_C 145 LDG 147 (349)
T ss_dssp TTS
T ss_pred CCC
Confidence 865
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.29 E-value=1.4 Score=46.95 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=63.1
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~ 222 (838)
.|+.+....|+..|++.... +...+. . +...+..|+|++. +.+.|+-...+.|..+++++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~---------------~~~~~~-~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKE---------------NATIVV-G---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp EEEEECEEEEEEEETTCTTS---------------CCEEEE-E---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEccCeEEEEECCCCce---------------EEEEEe-c---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 35556667899999865321 001111 1 1225678999984 56777777888999999887
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEECCC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~~ 271 (838)
+. .....+..--....+|++++. |.| |+-+..+.|.+.++++
T Consensus 67 ~~-------~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 67 TE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp SS-------CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC-------ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 51 111111111234568999974 555 6766778999998865
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.15 E-value=0.33 Score=57.29 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=43.8
Q ss_pred EEEEcCCCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEee-CC-----CcEEEE
Q 003217 196 CMVGDEASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGS-EG-----GGIKIW 267 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~D-GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS-~D-----gtIrvW 267 (838)
++++..+|++++.|+.+ ..+.+||..+.. +.....+...+.. .++++.++|+| +.|+ .+ ..+.+|
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~------W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS------WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTE------EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCc------eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEe
Confidence 46677899999999854 579999987641 1111112111211 24556678985 5666 44 578999
Q ss_pred ECCCc
Q 003217 268 PWEAI 272 (838)
Q Consensus 268 d~~~~ 272 (838)
|..+.
T Consensus 320 d~~t~ 324 (656)
T 1k3i_A 320 SPSSK 324 (656)
T ss_dssp ETTTT
T ss_pred CCCCC
Confidence 98653
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.13 E-value=2.2 Score=46.99 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=60.8
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~ 222 (838)
.|+.+..+.|+.-++...... ..+.+...+..|++++.. .+.|+-...+.|+.+++++
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~---------------------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYT---------------------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred eeEEeccceeEEEccCCccee---------------------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 444555678888887642211 011113467889999854 5666666778999999876
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEec-CCCE-EEeeCCCcEEEEECCC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~~ 271 (838)
.. ............-....+|++++ .+.| |+-+..+.|.+.++++
T Consensus 144 ~~----~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 144 AH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred CC----CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 21 00011122222345678999998 4556 5767778888888764
No 293
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.04 E-value=1.8 Score=45.31 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=46.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC--CC-cEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE--GG-GIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~--Dg-tIrvWd~ 269 (838)
....++++++|+++++-..++.|..||.++. ....+. -.+...+|+++++|+|+.+.. ++ .|..++.
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 4667999999998888778899999998763 222221 134688999999999765543 22 3444454
Q ss_pred CC
Q 003217 270 EA 271 (838)
Q Consensus 270 ~~ 271 (838)
.+
T Consensus 103 ~~ 104 (306)
T 2p4o_A 103 SD 104 (306)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 294
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.97 E-value=1.8 Score=50.39 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=53.9
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE---EEEEeCCC-
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG- 509 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~- 509 (838)
.+|.|.-||+ +|+.+=....+. ++. .+...|..++.|+.|+.|+.||.+ |+.+-.+....+.+ .....+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 3688999999 788764444322 222 245568889999999999999986 88776665443322 11235776
Q ss_pred EEEEEcC-CCCeeee
Q 003217 510 YIFTLAN-HGGIRGW 523 (838)
Q Consensus 510 ~l~S~S~-DgtIrlW 523 (838)
|++..+. .+.+-+|
T Consensus 543 Yv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 543 YLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECCCSHHHHH
T ss_pred EEEEEccCCCccccc
Confidence 5555443 4445555
No 295
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.83 E-value=0.042 Score=57.31 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=75.9
Q ss_pred EEEEEcCCCcEE-EEECCCeEEEEcC-CCCeeeEeecCCc-cEEEEEEcCCEEEEEe-eCCeEEEEeCC-Cccccccccc
Q 003217 423 EALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 423 ~ala~S~dg~l~-Sgs~DgtIrlWD~-~g~~l~tl~~H~~-~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH 497 (838)
..|.++ +++|+ +.+.+|.|+..|+ +|+.++++ .... ---.++++|++||... .++.+.++|.+ .+.+.++..-
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 456676 45664 5566788999999 78888877 3222 2235788888888765 58999999987 6777777643
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
..=+.++.|++.|+....++.|.++|..+...+
T Consensus 136 -~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 136 -GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp -SCCCCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred -CceeEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 233678888988877667888999987665443
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.78 E-value=3.2 Score=46.16 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=43.1
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC
Q 003217 193 SVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (838)
Q Consensus 193 ~V~~la~s~d--g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~ 260 (838)
...+|+++|+ .+.||.+...+.|+.++..++ .+..+.+.-....+|+++++|.|+.+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---------~v~~~~~~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---------YVDIKTTNIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---------EEEEECCCCSCEEEEEECTTCCEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---------EEEEeecCCCCccEEEECCCCCEEEEcC
Confidence 4568999984 566777766689999999775 3444444455688999999999765543
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.78 E-value=4.5 Score=48.77 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvW 267 (838)
...+..|++++. +.+.|+-...+.|+.+++.+.. ........+...-....+|++++.+. | |+-+..+.|.+.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~----~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCC----CCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 346788999984 5566777777899999987631 00011122222334567899998774 5 677778899998
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
++++
T Consensus 499 ~ldG 502 (791)
T 3m0c_C 499 DTKG 502 (791)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8865
No 298
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.48 E-value=0.83 Score=53.04 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=48.6
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCccCCCCCcceeEEec--cc--------cccEEEEEE
Q 003217 196 CMVGDEASGVVWSGHRD----------------GRIMCWKMNARLLDSDDGFGEVLSWQ--AH--------RGPVLSLCI 249 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~D----------------GtIrvWd~~~g~~~~~~~~~~~~~l~--gH--------~~~V~slaf 249 (838)
.+++|++.++|+.++.+ +.|..+|..+| +.+-.++ .| ..++. +..
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG--------~~~W~~~~~~~d~~d~~~~~~p~l-~~~ 309 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG--------MAKWGYQKTPHDEWDFAGVNQMVL-TDQ 309 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC--------CEEEEEESSTTCSSCCCCCCCCEE-EEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC--------cEEEEecCCCCcccccccCCCCEE-Eec
Confidence 46788888888887743 35899999988 4444433 22 22332 222
Q ss_pred ecCCC----EEEeeCCCcEEEEECCCcceeeec
Q 003217 250 SSYGD----LWSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 250 s~dG~----L~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
..+|+ ++.++.+|.+.+.|.++++.....
T Consensus 310 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 310 PVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 34783 467899999999999887655443
No 299
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.18 E-value=3.4 Score=48.12 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=48.9
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEEeCC-Cccccccccccc----CEEEEEeCCC-
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG- 509 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~----~V~sla~dg~- 509 (838)
+|.|.-||+ +|+.+=.... ..++. .+...|..++.|+.|+.|+.||.+ |+++-.+..... ++. ...+|+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~-y~~~G~q 529 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT-YTHKGTQ 529 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEE
T ss_pred cCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE-EEeCCEE
Confidence 578999999 7876644432 11111 255678888899999999999987 887655543332 222 235775
Q ss_pred EEEEEcC
Q 003217 510 YIFTLAN 516 (838)
Q Consensus 510 ~l~S~S~ 516 (838)
|+++.+.
T Consensus 530 yv~~~~G 536 (599)
T 1w6s_A 530 YVAIYYG 536 (599)
T ss_dssp EEEEEEC
T ss_pred EEEEEcc
Confidence 5555444
No 300
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.15 E-value=0.016 Score=64.34 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=25.7
Q ss_pred eEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
..|+++|+||..+...-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999998766677888888887765
No 301
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.15 E-value=0.13 Score=53.28 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHh
Q 003217 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (838)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~ 718 (838)
..|+++| ++.+ +.|++.||.+... .+|.+..+.|...
T Consensus 121 ~R~~l~i--~i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~ 157 (261)
T 1sr4_B 121 SRPAVGI--RIGT--DVFFTVHALATGG--SDAVSLIRNIFTT 157 (261)
T ss_dssp CCCEEEE--EETT--EEEEEEECCTTTT--TTHHHHHHHHHHH
T ss_pred CcceEEE--EECC--eEEEEeCCCCCCC--chHHHHHHHHHHH
Confidence 7888888 4777 9999999999852 2345555566554
No 302
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.15 E-value=0.21 Score=51.38 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=75.0
Q ss_pred eEEEEEcCCCcEEEEECC---CeEEEEcC-CCCeeeEeecCCcc-EEEEEEcCCEEEEEe-eCCeEEEEeCC-Ccccccc
Q 003217 422 TEALTTSIDGMIWTGGAN---GLLLQWDP-NGNRLQDFQYLPFA-VQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~D---gtIrlWD~-~g~~l~tl~~H~~~-V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l 494 (838)
+..|.|++ ++|+.++.. ..|+..|+ +|+.++.+...... --.+++++++|+..+ .++.+.++|.+ .+++.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 44577776 677655443 38999999 79988887643322 235677888888766 58999999987 6777776
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
..... =+.++.|++.|+....++.|.++|..+...
T Consensus 102 ~~~~~-Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 102 RYPGE-GWALTSDDSHLYMSDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp ECSSC-CCEEEECSSCEEEECSSSEEEEECTTTCCE
T ss_pred eCCCC-ceEEeeCCCEEEEECCCCeEEEEeCCCCeE
Confidence 64332 367888888776555678899988766443
No 303
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.06 E-value=2.7 Score=46.68 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=42.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 193 ~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
....|++|| +++.|+.....+.|+.+|++++ .+..+.........|+|+++|+ |+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---------~v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---------YVSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---------EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---------EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 456789998 5677888777688999999874 2333333445678999999998 76444
No 304
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.77 E-value=2 Score=50.52 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=46.0
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCCE-EEee-C
Q 003217 196 CMVGDE-ASGVVWSGHRDG-----------RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDL-WSGS-E 260 (838)
Q Consensus 196 ~la~s~-dg~~LaSGs~DG-----------tIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L-~SgS-~ 260 (838)
++++.+ +|++++.|+.+. .+.+||..++. +..+..+ ..|.....++++..+|+| +.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC------BCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc------EEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 455566 889999988653 57899988752 2233332 223333445778889995 5776 4
Q ss_pred CCcEEEEECCC
Q 003217 261 GGGIKIWPWEA 271 (838)
Q Consensus 261 DgtIrvWd~~~ 271 (838)
+..+.+||..+
T Consensus 264 ~~~v~~yd~~t 274 (656)
T 1k3i_A 264 AKKTSLYDSSS 274 (656)
T ss_dssp TTCEEEEEGGG
T ss_pred CCceEEecCcC
Confidence 56899999865
No 305
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.59 E-value=0.64 Score=53.83 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=55.7
Q ss_pred EEEEEcCCCc-EE-EEECCCeEEEEcCC-CC------------eeeEeecCCccEE-EEEEcCCEEEEEe-eCCeEEEEe
Q 003217 423 EALTTSIDGM-IW-TGGANGLLLQWDPN-GN------------RLQDFQYLPFAVQ-CLCTFGSQIWVGY-MNGIVQVLD 485 (838)
Q Consensus 423 ~ala~S~dg~-l~-Sgs~DgtIrlWD~~-g~------------~l~tl~~H~~~V~-sls~dG~~LasGs-~DgtIrlWD 485 (838)
..+.++|||+ ++ ++-.+.+|.++|++ .+ ...+.....++-. .+.++| ++++.. .|+.|.+||
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEE
Confidence 4588999998 33 44467889999994 32 2333333233322 344567 777765 599999999
Q ss_pred CCC-----------cccccccccccCE--EE-----EEeCCCEEEEEc
Q 003217 486 LEG-----------NLLGGWVAHSSPV--IK-----MAVGAGYIFTLA 515 (838)
Q Consensus 486 ~~g-----------~~i~~l~gH~~~V--~s-----la~dg~~l~S~S 515 (838)
.+. +.+.++..|-.+- .. +.+||++|+++-
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 642 2455555554332 11 125888888753
No 306
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.45 E-value=0.82 Score=54.90 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=43.7
Q ss_pred CeEEEEEc-CCCCEEEEEe-CCC----cEEEEECCCC-ccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC---
Q 003217 193 SVMCMVGD-EASGVVWSGH-RDG----RIMCWKMNAR-LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG--- 261 (838)
Q Consensus 193 ~V~~la~s-~dg~~LaSGs-~DG----tIrvWd~~~g-~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D--- 261 (838)
.+...++| |||++||-+. .+| +|+++|++++ . .....+. ....+++|+|||+ |+-.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~-------~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ-------TIADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC-------CCCCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE-------eCCcccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 57788999 9999877443 333 5999999886 3 1011111 1234688999997 6544444
Q ss_pred --CcEEEEECCC
Q 003217 262 --GGIKIWPWEA 271 (838)
Q Consensus 262 --gtIrvWd~~~ 271 (838)
..|.+|++.+
T Consensus 245 ~~~~v~~~~lgt 256 (751)
T 2xe4_A 245 RENKVWRHVMGK 256 (751)
T ss_dssp CEEEEEEEETTS
T ss_pred CCCEEEEEECCC
Confidence 2466677755
No 307
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.40 E-value=0.96 Score=54.31 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=58.0
Q ss_pred EEEEcCCCc-EEEEE---CCCeEEEEcCC-CC-ee--eEee-cCCccEEEEE-EcCCEEEEEee-C----CeEEEEeCCC
Q 003217 424 ALTTSIDGM-IWTGG---ANGLLLQWDPN-GN-RL--QDFQ-YLPFAVQCLC-TFGSQIWVGYM-N----GIVQVLDLEG 488 (838)
Q Consensus 424 ala~S~dg~-l~Sgs---~DgtIrlWD~~-g~-~l--~tl~-~H~~~V~sls-~dG~~LasGs~-D----gtIrlWD~~g 488 (838)
.+.+||||+ |+..+ ....|.++|++ ++ .. +.+. .......++. .+|+.|+..+. + ..|.++|+++
T Consensus 275 ~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 567888887 44333 23358888884 32 22 4443 3445555665 45876665553 3 2667777763
Q ss_pred -ccccc-cccccc--CEEEEEeCCCE-EEEEcCCCCeeeeec
Q 003217 489 -NLLGG-WVAHSS--PVIKMAVGAGY-IFTLANHGGIRGWNV 525 (838)
Q Consensus 489 -~~i~~-l~gH~~--~V~sla~dg~~-l~S~S~DgtIrlWdl 525 (838)
..... +..|.. .+.++.++++. +++...|+..++|-+
T Consensus 355 ~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 355 PSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred cccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 33334 444544 34556666555 457777887666654
No 308
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.77 E-value=8.6 Score=41.18 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=61.1
Q ss_pred eEEEEEcC-CCcE-EEEECC-CeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEee-CCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGYM-NGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l-~Sgs~D-gtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs~-DgtIrlWD~~g~~i~~l 494 (838)
...++++| +|.| |+-..+ +.|...+.+|.....+.. .-..-+.|++| +.+|+.+.. .+.|..+|+.|...+.+
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 34567776 4555 444444 678888888765555432 23345667664 667776654 67899999886543322
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeeee
Q 003217 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (838)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrlWd 524 (838)
........+|+.+...++++. ..+.|...+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 222344566766666666554 445555554
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.70 E-value=14 Score=43.27 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=61.9
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g 223 (838)
|..+..+.|+.-|++..... ...|+ .+-..+..|+|++.+ .+.|+-..++.|..+++++.
T Consensus 9 Ll~s~~~~I~~i~l~~~~~~---------------~~~~~----~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 9 LLFSRRADIRRISLETNNNN---------------VAIPL----TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp EEEEETTEEEEEESSCTTCE---------------EECCC----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEeCCcEEEEECCCCCcc---------------eEEEc----CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC
Confidence 34456678888888642211 01121 112357889999854 55667677899999998764
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecCC-CE-EEeeCCCcEEEEECCC
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd~~~ 271 (838)
. ....+..-......||+++.+ +| |+-+..+.|.+-++++
T Consensus 70 ~--------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG 111 (628)
T 4a0p_A 70 A--------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 111 (628)
T ss_dssp S--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C--------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence 1 111122112346789999765 46 6777778888888765
No 310
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.47 E-value=17 Score=43.70 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=62.5
Q ss_pred eEEEEEcCC-CcEE-EEECC-CeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSID-GMIW-TGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~d-g~l~-Sgs~D-gtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...|+++|. |.|+ +-..+ +.|.+.+++|..++++.. .-...+.|++| +.+|+.+. ....|+..|+.|..+.++
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 446677664 5554 43233 578888888866655543 23566778776 56776665 457899999987644333
Q ss_pred cc---cccCEEEEEeCCCEEEEEcC-CCCeeeee
Q 003217 495 VA---HSSPVIKMAVGAGYIFTLAN-HGGIRGWN 524 (838)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S~-DgtIrlWd 524 (838)
.. .-....+|+.++++|+++.. .+.|..-+
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 21 22345677776777776653 34555444
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.40 E-value=9.2 Score=40.40 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCceEEEEEcCCCcEEEEECCCeEEEEcCC-CCeeeEee-c---CCccEEEEEEc-CCEEEEEeeCCeEEEEeCC-Cccc
Q 003217 419 NRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ-Y---LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GNLL 491 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~-g~~l~tl~-~---H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~~i 491 (838)
...+..+++++++.++.++.+|.+.+++.. |+--+.+. . +...+.++.++ ...+++++.++.|. +... |+.-
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW 282 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTW 282 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSC
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCccc
Confidence 345677888999999988889988888533 43333222 1 23457788763 33445555677773 4333 4432
Q ss_pred cccc---ccccCEEEEEe-CCCEEEEEcCCCCeeeee
Q 003217 492 GGWV---AHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 492 ~~l~---gH~~~V~sla~-dg~~l~S~S~DgtIrlWd 524 (838)
..+. .+...+.+|.+ ++..++.++.+|+|..++
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 2222 23455677765 566788888899876655
No 312
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.07 E-value=10 Score=39.88 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=62.2
Q ss_pred eEEEEEcC-CCcE-EEEECC-CeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l-~Sgs~D-gtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...++++| +|.| |+.... +.|...+++|...+.+.. .-..-+.|+.| +.+|+.+. ..+.|...|..|...+.+
T Consensus 122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 34566766 4555 443333 678888887766555432 23445667664 66777666 467999999987544433
Q ss_pred cc---cccCEEEEEeCCCEEEEEc-CCCCeeeeecC
Q 003217 495 VA---HSSPVIKMAVGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
.. .-....+|+.+++.++++. ..+.|...+..
T Consensus 202 ~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 21 1234566776666666554 45567666643
No 313
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.76 E-value=11 Score=39.68 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=40.8
Q ss_pred eEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEee---cCCccEEEEEE-cCCEEEEEeeCCeEEEEeC
Q 003217 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~---~H~~~V~sls~-dG~~LasGs~DgtIrlWD~ 486 (838)
+.++++.+++.++.++.++.| .+.. .|+--+.+. .+...+.++.+ ++..+++++.+|+|.-++-
T Consensus 252 ~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 456677777887777778876 4555 354433333 12345666755 4567778888998887764
No 314
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=92.66 E-value=13 Score=40.26 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred eEEEEEcC-CCcE-EEEECC-CeEEEEcCCCCeeeEee-cCCccEEEEEE--cCCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l-~Sgs~D-gtIrlWD~~g~~l~tl~-~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...++++| +|.| |+-... +.|...+..|.....+. ..-..-+.|++ ++.+|+.+. ..+.|+.+|+.|...+.+
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 34566765 4455 444344 67888888776555543 22334566666 466776665 467899999886533322
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeeee
Q 003217 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (838)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrlWd 524 (838)
........+|+.++..++++. ..+.|...+
T Consensus 284 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 284 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 222334566776666666554 455666655
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.26 E-value=21 Score=41.63 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=57.8
Q ss_pred EEEEEcC-CCcEEEEE--CCCeEEEEcCCCCeeeEeecCCccEEEEEEc--CCEEEEEee-CCeEEEEeCCCcccccccc
Q 003217 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF--GSQIWVGYM-NGIVQVLDLEGNLLGGWVA 496 (838)
Q Consensus 423 ~ala~S~-dg~l~Sgs--~DgtIrlWD~~g~~l~tl~~H~~~V~sls~d--G~~LasGs~-DgtIrlWD~~g~~i~~l~g 496 (838)
..|+++| .|.|+... ..+.|...+++|..++.+...-..-+.|+.| +++|+.+.. .+.|...|+.|.....+..
T Consensus 126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~ 205 (628)
T 4a0p_A 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205 (628)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec
Confidence 4566665 45553332 1345666677665554444334455666664 566666553 5788888887643333433
Q ss_pred cccCEEEEEeCCCEEEEEcC-CCCeeeeec
Q 003217 497 HSSPVIKMAVGAGYIFTLAN-HGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~-DgtIrlWdl 525 (838)
......+|+.++..+++... .+.|...|.
T Consensus 206 ~l~~P~glav~~~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 206 DLPHPFGLTQYQDYIYWTDWSRRSIERANK 235 (628)
T ss_dssp CCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence 33445567765566665543 455655553
No 316
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.11 E-value=17 Score=40.21 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=55.4
Q ss_pred CEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC---Cc-EEE
Q 003217 143 EQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---GR-IMC 217 (838)
Q Consensus 143 ~~l~~g~d-~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D---Gt-Irv 217 (838)
..||.+.. +.|+.+|.++...... .. . .....+++++++|+++++-... .. +..
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~------------------~~--~-~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIK------------------TT--N-IGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEE------------------CC--C-CSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEe------------------ec--C-CCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 57887543 8999999865332110 00 1 3357899999999954444321 12 222
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEec-CCCEEEee-CCCcEEEEECCCc
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGS-EGGGIKIWPWEAI 272 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS-~DgtIrvWd~~~~ 272 (838)
.+...+ +.....+. .-..-..++++| +|.|+.+. .++.|+.++.+++
T Consensus 212 ~~~~~~-------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 212 FTRASG-------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp ECGGGT-------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred EECCCC-------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 222221 11111111 122335688999 78887554 5677888887643
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.09 E-value=0.39 Score=57.27 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=43.0
Q ss_pred EEEEEcCC-CcEE-EEECCCeEEEEcCCCCeeeEeecC---CccEEEEEEcCCEEE-EEeeCCeEEEEeCC-Ccccccc
Q 003217 423 EALTTSID-GMIW-TGGANGLLLQWDPNGNRLQDFQYL---PFAVQCLCTFGSQIW-VGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 423 ~ala~S~d-g~l~-Sgs~DgtIrlWD~~g~~l~tl~~H---~~~V~sls~dG~~La-sGs~DgtIrlWD~~-g~~i~~l 494 (838)
..|+++++ ++|+ +-+..+.|..+|..|...+++... ......|++++.+|+ +....+.|..+|.. |+.+..+
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 35778875 4564 444567899999977544444321 122335666666554 44456789888864 6555444
No 318
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=91.78 E-value=0.48 Score=48.74 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
....++|++ ..+.|.|.|+.|.-+ ..|.+..+.|.+.+
T Consensus 130 ~Rp~lgiri----~~~~ff~tHa~a~~g--~da~a~v~~I~~~~ 167 (262)
T 2f1n_A 130 GRPLLGIRI----GNDAFFTAHAIAMRN--NDAPALVEEVYNFF 167 (262)
T ss_dssp CCCEEEEEE----TTEEEEEEECCSSSS--CSHHHHHHHHHHHH
T ss_pred CCceEEEEE----CCEEEEEEEecCCCC--ccHHHHHHHHHHHH
Confidence 788899888 259999999999732 23666777777653
No 319
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=91.22 E-value=0.03 Score=67.36 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred cCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 687 YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 687 ~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
.+..|+++|+||..+...-..|......|++.+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp ---------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 367899999999886543344555555555544
No 320
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.13 E-value=20 Score=39.09 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=63.3
Q ss_pred eEEEEEcC-CCcEE-EEEC-CCeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMIW-TGGA-NGLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l~-Sgs~-DgtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...|+++| +|.|+ +-.. .+.|...+++|...+.+.. .-..-+.|+.| +.+|+.+. ..+.|+..|+.|...+++
T Consensus 204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 34566766 45553 3322 3568888887765555432 23456677765 66777765 467999999987544333
Q ss_pred c---ccccCEEEEEeCCCEEEEEc-CCCCeeeeecCC
Q 003217 495 V---AHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (838)
Q Consensus 495 ~---gH~~~V~sla~dg~~l~S~S-~DgtIrlWdl~s 527 (838)
. +......+|+.+++.+++.. ..+.|..++..+
T Consensus 284 ~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 284 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 2 12334567776666666554 556677766433
No 321
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=87.61 E-value=30 Score=36.32 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=59.4
Q ss_pred EEEEEcC-CCcEEEEE--CCCeEEEEcCCCCeeeEee-cCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCccccccc
Q 003217 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQ-YLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~-dg~l~Sgs--~DgtIrlWD~~g~~l~tl~-~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (838)
..++++| +|.|+... ..+.|...+.+|...+.+. ..-..-+.|++| +.+|+.+. ..+.|+.+|..|...+.+.
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 3455555 34544333 2456777777775544442 222334566654 66777665 4678999998865433332
Q ss_pred -ccccCEEEEEeCCCEEEEEc-CCCCeeeeecCC
Q 003217 496 -AHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (838)
Q Consensus 496 -gH~~~V~sla~dg~~l~S~S-~DgtIrlWdl~s 527 (838)
+......+|+.+++.+++.. ..+.|...+..+
T Consensus 205 ~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 205 KGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 23344567776666666554 456666666543
No 322
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=86.61 E-value=31 Score=35.32 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=46.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcc--eeEEe----ccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFG--EVLSW----QAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~--~~~~l----~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
-.-.+++.+++.++++--.++.+.+.++.... ... ....+ ..+.....+|+++|.++ ||.+.+....+
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~-----~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNS-----EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTC-----CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC-----eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 45567777777766665566778888776531 001 11111 12345678999999885 88888777777
Q ss_pred EEECC
Q 003217 266 IWPWE 270 (838)
Q Consensus 266 vWd~~ 270 (838)
||.+.
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77764
No 323
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=86.53 E-value=37 Score=36.16 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEEEecCCCEEEeeCCCcEEEEE
Q 003217 244 VLSLCISSYGDLWSGSEGGGIKIWP 268 (838)
Q Consensus 244 V~slafs~dG~L~SgS~DgtIrvWd 268 (838)
-.+|+|.|||+|+.+..++.|++++
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 4589999999988888889999988
No 324
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=86.50 E-value=48 Score=37.43 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=40.8
Q ss_pred CeEEEEEcC-CCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecc----ccccEEEEEE-------ecCCC-EEEe
Q 003217 193 SVMCMVGDE-ASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQA----HRGPVLSLCI-------SSYGD-LWSG 258 (838)
Q Consensus 193 ~V~~la~s~-dg~~LaSGs~D-GtIrvWd~~~g~~~~~~~~~~~~~l~g----H~~~V~slaf-------s~dG~-L~Sg 258 (838)
....|+||| +.+.|+.+..+ +.|++.|+.++ .+.++.. .-.....|+| +++|. |+.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 467899998 45666666554 67888888875 3333321 2235889999 99998 7766
Q ss_pred eCCC
Q 003217 259 SEGG 262 (838)
Q Consensus 259 S~Dg 262 (838)
...+
T Consensus 211 d~~~ 214 (496)
T 3kya_A 211 IDYD 214 (496)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 5543
No 325
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=86.04 E-value=34 Score=35.26 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=36.5
Q ss_pred EEEEEEcCCEEEEEee-CCeEEEEeCCC--cc--cccccccccCEEEEE--eCCCEEEEEcCCCCeeeeec
Q 003217 462 VQCLCTFGSQIWVGYM-NGIVQVLDLEG--NL--LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 462 V~sls~dG~~LasGs~-DgtIrlWD~~g--~~--i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl 525 (838)
.+.|+++|++|+++.. .+.|..+|+.+ ++ ...+.. ......|+ .+|+..++....+.|.+++.
T Consensus 171 pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 171 ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred CCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 4456888988877664 68999999863 32 111110 01122233 45665555555677888774
No 326
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=84.33 E-value=6.5 Score=46.63 Aligned_cols=86 Identities=10% Similarity=-0.009 Sum_probs=47.3
Q ss_pred CeEEEEcCCCCeeeEeec-CCccEEEEEE--cCCEEEEEe-eCCeEEEEeCCCccccccc---ccccCEEEEEeCCCEEE
Q 003217 440 GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWV---AHSSPVIKMAVGAGYIF 512 (838)
Q Consensus 440 gtIrlWD~~g~~l~tl~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~---gH~~~V~sla~dg~~l~ 512 (838)
+.|.+.++.|...+.+.. .-..-+.|++ ++.+|+.+. ..+.|..+|+.|...+++. +.-....+|+.+++.|+
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~ly 598 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEE
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEE
Confidence 567777776654443321 1222345555 455555554 5679999999864333322 11122345566666766
Q ss_pred EEc-CCCCeeeeec
Q 003217 513 TLA-NHGGIRGWNV 525 (838)
Q Consensus 513 S~S-~DgtIrlWdl 525 (838)
+.. ..+.|...+.
T Consensus 599 wtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 599 WTDIINEAIFSANR 612 (699)
T ss_dssp EECSTTTCEEEEET
T ss_pred EEeCCCCeEEEEEc
Confidence 554 4567777764
No 327
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=81.82 E-value=83 Score=36.44 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CE-EEeeCCCcEEEEE
Q 003217 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (838)
..+..|++++.++ +.|+=...+.|..+++++.. .....+..--.....|++++.+ +| |+-+..+.|.+-+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 3577899998555 55565567889999987641 1112222222467899999965 45 5777788999988
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+++
T Consensus 113 ~dG 115 (619)
T 3s94_A 113 LDG 115 (619)
T ss_dssp TTS
T ss_pred CCC
Confidence 865
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=78.10 E-value=33 Score=38.02 Aligned_cols=113 Identities=7% Similarity=0.089 Sum_probs=71.7
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 141 ~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
.+..++...++.||.-++........ + ..| .++. ...|.-+..+|+|++||.-+. .+|.|-.+
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~-----L--------~~~--~~i~-f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~L 93 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHS-----L--------NFS--RHLV-LDDTFHVISSTSGDLLCLFND-NEIFVMEV 93 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEE-----E--------ECT--TTCC-CCTTCEEEECTTSSEEEEECS-SEEEEEEC
T ss_pred CCCEEEEEECCEEEEEECCCCCcceE-----E--------ecC--cccc-cCceeEEEECCCCCEEEEecC-CeEEEEEe
Confidence 45699999999999999863211100 0 000 0001 124667999999999999755 47888887
Q ss_pred CCCccCCC-----CCcceeEEec-c-----ccccEEEEEEecCC----CEEEeeCCCcEEEEECCC
Q 003217 221 NARLLDSD-----DGFGEVLSWQ-A-----HRGPVLSLCISSYG----DLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 221 ~~g~~~~~-----~~~~~~~~l~-g-----H~~~V~slafs~dG----~L~SgS~DgtIrvWd~~~ 271 (838)
..+..... ..++ ..++. + ...+|..+.|.|-| .|++=-.|++||+||+..
T Consensus 94 P~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 94 PWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 74310000 1111 22222 1 35789999999965 388888999999999964
No 329
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=76.81 E-value=85 Score=33.69 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=36.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec----CCC---EE--EeeC--CCcEEEEEC
Q 003217 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD---LW--SGSE--GGGIKIWPW 269 (838)
Q Consensus 201 ~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~----dG~---L~--SgS~--DgtIrvWd~ 269 (838)
|...+++.-.+++-+.++|+.+ +.+..+.+ +.++.|.+-| .|+ |+ |.-. +++|+++++
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G---------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDG---------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTS---------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcCCC---------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 3445555556777899999944 55665543 4566665555 232 43 3334 689999977
Q ss_pred C
Q 003217 270 E 270 (838)
Q Consensus 270 ~ 270 (838)
+
T Consensus 107 D 107 (355)
T 3amr_A 107 D 107 (355)
T ss_dssp C
T ss_pred C
Confidence 4
No 330
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=75.43 E-value=1.2e+02 Score=34.91 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=48.5
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEE
Q 003217 192 SSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd 268 (838)
..+.+|++|+. +.+.|+-...+.|+.+++++.. ....+..--....+||++.. ++| |+-+..+.|.+-+
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--------cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 35778999985 4556666677899999988741 11122222345678999974 456 6767778898888
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+++
T Consensus 421 ~~G 423 (619)
T 3s94_A 421 LNG 423 (619)
T ss_dssp TTS
T ss_pred CCC
Confidence 765
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=74.18 E-value=93 Score=34.61 Aligned_cols=142 Identities=13% Similarity=0.244 Sum_probs=77.4
Q ss_pred cccCcccc---cCCCCCCCceeecCCCCCcccc-----CceeEEEEecCC-EEE---------EecCCCEEEEeCCCCcc
Q 003217 102 MFKPPVRA---ALHPARPPSLEVKPHPLRETQI-----GCFLRTIVCTEE-QLW---------AGGENGLRVWNLKELYD 163 (838)
Q Consensus 102 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-~l~---------~g~d~~vrvWd~~~~~~ 163 (838)
+-|+|+.| -|||..+ -+++|.. +-.|+ -+-+.+....+. .+| +-++..|..|+++....
T Consensus 61 ~~rrpi~AdsAIMnP~~~-iiALrag--~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~ 137 (494)
T 1bpo_A 61 PIRRPISADSAIMNPASK-VIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQ 137 (494)
T ss_dssp CEEEECCCSEEEECSSSS-CEEEEET--TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCC
T ss_pred ceecccccceeeeCCCCc-EEEEecC--CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCC
Confidence 34566655 5688765 4788741 11111 122323332233 333 35789999999864211
Q ss_pred ccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCccCCCCCcceeEE
Q 003217 164 ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-------RDGRIMCWKMNARLLDSDDGFGEVLS 236 (838)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-------~DGtIrvWd~~~g~~~~~~~~~~~~~ 236 (838)
+.. .-.|+ .++. ..-|..-..|++.++++--+ -.|.+.+++.+. +..+.
T Consensus 138 P~k-----vFdR~---------~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---------~~sQ~ 193 (494)
T 1bpo_A 138 PVK-----MFDRH---------SSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------KVSQP 193 (494)
T ss_dssp CEE-----EEECC---------GGGT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---------CCEEE
T ss_pred chh-----heecc---------hhcc-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---------cccch
Confidence 110 00011 1122 44577778888888766432 246788999987 45677
Q ss_pred eccccccEEEEEEecCC---CEE-EeeC---CCcEEEEECC
Q 003217 237 WQAHRGPVLSLCISSYG---DLW-SGSE---GGGIKIWPWE 270 (838)
Q Consensus 237 l~gH~~~V~slafs~dG---~L~-SgS~---DgtIrvWd~~ 270 (838)
+.||.+.-.++.+..+. .|. -+.. .+.+.|-++.
T Consensus 194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 89998776666554332 232 2322 3667777764
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=71.27 E-value=29 Score=37.11 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCcEEEEECCCeEEEEcCCCC-eeeEee---cCCccEEEEEEc-----CCEEEEEeeC--------CeEE
Q 003217 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGN-RLQDFQ---YLPFAVQCLCTF-----GSQIWVGYMN--------GIVQ 482 (838)
Q Consensus 420 ~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~-~l~tl~---~H~~~V~sls~d-----G~~LasGs~D--------gtIr 482 (838)
.....+++.|||+|+.+..++.|+++|.+|+ .+..+. ........|+++ +.+|+++... ..|.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 3456889999999999888899999987675 222211 112346777765 3578776653 6777
Q ss_pred EEeCCC
Q 003217 483 VLDLEG 488 (838)
Q Consensus 483 lWD~~g 488 (838)
.|+..+
T Consensus 109 r~~~~~ 114 (354)
T 3a9g_A 109 RGRLDG 114 (354)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 787653
No 333
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=67.74 E-value=74 Score=33.99 Aligned_cols=93 Identities=9% Similarity=0.005 Sum_probs=54.2
Q ss_pred ceeeecCCcEEEEecc--C-ccc-----cCCCceEEEEEcC--CCcEEEEECCC----eEEEEcCCCCeeeEeec-----
Q 003217 397 NAIMGAADAVRRVAAK--G-GFG-----DDNRRTEALTTSI--DGMIWTGGANG----LLLQWDPNGNRLQDFQY----- 457 (838)
Q Consensus 397 ~~~~g~~~~v~~v~~~--g-~~~-----~~~~~v~ala~S~--dg~l~Sgs~Dg----tIrlWD~~g~~l~tl~~----- 457 (838)
.+++|+..|+.++... + ++. -....|.+|+++| ++.||.++..+ .|...+-.|+--+.+..
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~ 103 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFN 103 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCC
Confidence 3466666666555431 1 222 1234688999988 77898887665 45444333433222211
Q ss_pred ---------CCccEEEEEEc----CCEEEEEeeCCeEEEEeCCCc
Q 003217 458 ---------LPFAVQCLCTF----GSQIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 458 ---------H~~~V~sls~d----G~~LasGs~DgtIrlWD~~g~ 489 (838)
+...|.+|+++ ...|++++..+.|...+-.|+
T Consensus 104 ~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~ 148 (394)
T 3b7f_A 104 KAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGA 148 (394)
T ss_dssp CCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTS
T ss_pred CcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCC
Confidence 12357788775 568999888888877765543
No 334
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=66.64 E-value=1.4e+02 Score=31.77 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=45.8
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc----cc--ccEEEEEE---ecCCCEEEeeC-----
Q 003217 196 CMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA----HR--GPVLSLCI---SSYGDLWSGSE----- 260 (838)
Q Consensus 196 ~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~g----H~--~~V~slaf---s~dG~L~SgS~----- 260 (838)
|.+|++..+++|.++ ..|+|..|+..++. .....+.+ .. ..+.+|.+ .|+|+|+..+.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-------~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-------HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCC-------EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCe-------EEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 578888777777777 89999999997541 12223332 11 13689999 68888754333
Q ss_pred ---------CCcEEEEECC
Q 003217 261 ---------GGGIKIWPWE 270 (838)
Q Consensus 261 ---------DgtIrvWd~~ 270 (838)
+..|..+|+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLP 108 (334)
T ss_dssp CTTSCCSSSCCEEEEEESS
T ss_pred cccccccCCCCEEEEEcCC
Confidence 5778888886
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=65.26 E-value=11 Score=38.09 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=40.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccE--------EEEEEecCCCEEEeeCCCcE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--------LSLCISSYGDLWSGSEGGGI 264 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V--------~slafs~dG~L~SgS~DgtI 264 (838)
.+.+++|+|+|.+-+. .+|.+.--+..+. ....|.+-...| .++.|.++|.|+.. .||.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~---------~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTH---------DNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKL 109 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCS---------TTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCC---------CcccccccccEecccccccceEEEECCCCCEEEe-CCCEE
Confidence 5779999998875555 6676433333231 112232222233 68999999998766 56888
Q ss_pred EEEEC
Q 003217 265 KIWPW 269 (838)
Q Consensus 265 rvWd~ 269 (838)
.-|+.
T Consensus 110 yr~~p 114 (236)
T 1tl2_A 110 YKASP 114 (236)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 76765
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=63.28 E-value=27 Score=38.64 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=66.5
Q ss_pred ecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeec-----CCCCeEEEEEcCC---CCEEEEEeC
Q 003217 140 CTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-----GVSSVMCMVGDEA---SGVVWSGHR 211 (838)
Q Consensus 140 ~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----g~~~V~~la~s~d---g~~LaSGs~ 211 (838)
.+++.|.+.++.+|.|-.+-.......+ .+. .....+++..+. ...+|..+.|.|- +..|++=..
T Consensus 75 psG~lLAl~g~~~V~Vv~LP~~~~~~~~----~~~---~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts 147 (452)
T 3pbp_A 75 TSGDLLCLFNDNEIFVMEVPWGYSNVED----VSI---QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE 147 (452)
T ss_dssp TTSSEEEEECSSEEEEEECCTTCSCCCC----HHH---HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET
T ss_pred CCCCEEEEecCCeEEEEEecCccccCcc----ccc---ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec
Confidence 3466777788899999988632211100 000 000011122221 0467999999995 468999999
Q ss_pred CCcEEEEECCCCccCCCCCc--c---eeEEeccccccEEEEEEecCCC-EEEee--CCCcE
Q 003217 212 DGRIMCWKMNARLLDSDDGF--G---EVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGI 264 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~--~---~~~~l~gH~~~V~slafs~dG~-L~SgS--~DgtI 264 (838)
|++||+||+.... ..+. + ....+..+...|.+++|.++|- ||..+ ++|-|
T Consensus 148 D~~Ir~yDl~~s~---~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 148 DDTITMFDILNSQ---EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp TSCEEEEETTCTT---SCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred CCEEEEEEcccCC---CCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 9999999998632 0110 0 0111122336788999999774 66543 66654
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=62.84 E-value=3e+02 Score=34.39 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=56.6
Q ss_pred eEEEEcC-CCCeeeEeec-CCccEEEEEE---c---CCEEEEEe----------eCCeEEEEeCC-Ccc--ccccccccc
Q 003217 441 LLLQWDP-NGNRLQDFQY-LPFAVQCLCT---F---GSQIWVGY----------MNGIVQVLDLE-GNL--LGGWVAHSS 499 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~-H~~~V~sls~---d---G~~LasGs----------~DgtIrlWD~~-g~~--i~~l~gH~~ 499 (838)
.|++.|. +.+.+..+.- ....+.|++. . ..+|++|+ ..|.|.++++. +++ +.. +-..+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g 886 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKG 886 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESS
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCC
Confidence 5999998 6777777664 3446667642 2 35999988 34789999975 332 222 23467
Q ss_pred CEEEEE-eCCCEEEEEcCCCCeeeeecCCC
Q 003217 500 PVIKMA-VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 500 ~V~sla-~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+|++|. +.|..++.. .++|++|++...
T Consensus 887 ~v~al~~~~g~Lla~i--g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 887 AVYSMVEFNGKLLASI--NSTVRLYEWTTE 914 (1158)
T ss_dssp CEEEEEEETTEEEEEE--TTEEEEEEECTT
T ss_pred cCEEEeeeCCEEEEEc--CCEEEEEECCCC
Confidence 899998 577545444 378999998653
No 338
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=58.01 E-value=98 Score=32.75 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=45.6
Q ss_pred CceEEEEEcCCCcEEEEECCCeEEEEcCCCCe--eeEee---cCCccEEEEEEc-----CCEEEEEeeC------CeEEE
Q 003217 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGNR--LQDFQ---YLPFAVQCLCTF-----GSQIWVGYMN------GIVQV 483 (838)
Q Consensus 420 ~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~--l~tl~---~H~~~V~sls~d-----G~~LasGs~D------gtIrl 483 (838)
.....+++.|||.|+.+..++.|++++ +|+. +..+. ........|+++ +.+|+++... +.|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 345689999999999888889999998 5542 22111 112345677764 3588877653 67888
Q ss_pred EeCCC
Q 003217 484 LDLEG 488 (838)
Q Consensus 484 WD~~g 488 (838)
++..+
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 88763
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=56.09 E-value=23 Score=35.70 Aligned_cols=98 Identities=9% Similarity=-0.027 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccE--------EEEEEcCC-EEEEEeeCCeEEEEeC--CC
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAV--------QCLCTFGS-QIWVGYMNGIVQVLDL--EG 488 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V--------~sls~dG~-~LasGs~DgtIrlWD~--~g 488 (838)
.+..++|+|+|.|+.. .+|.+..-+. ++.. +.+.+....| .++.+|.+ .|++. .||.|.-|+. ++
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence 3458999999999877 6776666666 3221 1111112223 46777654 44444 7799998986 22
Q ss_pred cc--cc--cccccc--cCEEEEEeCCCEEEEEcCCCCee
Q 003217 489 NL--LG--GWVAHS--SPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 489 ~~--i~--~l~gH~--~~V~sla~dg~~l~S~S~DgtIr 521 (838)
.- +. +..+-. ..+..|.++++..+.+-+|+.+.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~ly 157 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQFY 157 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEeCCcEE
Confidence 21 11 111110 34677887776544444477643
No 340
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=55.29 E-value=60 Score=35.58 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=62.8
Q ss_pred CceEEEEEcC--CCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeC-----CeEEEEeCCCcc
Q 003217 420 RRTEALTTSI--DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN-----GIVQVLDLEGNL 490 (838)
Q Consensus 420 ~~v~ala~S~--dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~D-----gtIrlWD~~g~~ 490 (838)
.....|+++| ++.|+.+...+.|+.+|.++..+.++.........|++ +|++|+++... ..+.+.+..+..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 3456788886 47788777657899999977666666555555677776 57777776642 245555555543
Q ss_pred c--ccccccccCEEEEE--e-CCCEEEEEcCCCCeeeeecC
Q 003217 491 L--GGWVAHSSPVIKMA--V-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 491 i--~~l~gH~~~V~sla--~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
. ..+.. ......++ + ++...++-..++.|..++..
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 2 22221 11223344 3 34444455566677777754
No 341
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=52.72 E-value=1.8e+02 Score=31.14 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEcCCCC--EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CCEEEeeCCCcEEEEEC
Q 003217 195 MCMVGDEASG--VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 195 ~~la~s~dg~--~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L~SgS~DgtIrvWd~ 269 (838)
.|+.-+|..+ +++...++|.+..|++.... +.....+.+++|.- .+.+-.++.++. |.|+.+-+|..|..++.
T Consensus 133 lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~-~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 133 FTLYHSQKTGKYYAMVTGKEGEFEQYELKADK-NGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp EEEEECTTTCCEEEEEECSSSEEEEEEEEECT-TSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred EEEEecCCCCcEEEEEECCCCeEEEEEEEeCC-CCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 3554487543 68888999999999984210 00011133455543 346778888875 56999999976544453
No 342
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=51.21 E-value=1.3e+02 Score=32.05 Aligned_cols=88 Identities=7% Similarity=0.109 Sum_probs=54.0
Q ss_pred CCeEEEEcCC----CCeeeEee--cCC-----------ccEEEEEEc--CCEEEEEeeC-CeEEEEeCCCcccccccccc
Q 003217 439 NGLLLQWDPN----GNRLQDFQ--YLP-----------FAVQCLCTF--GSQIWVGYMN-GIVQVLDLEGNLLGGWVAHS 498 (838)
Q Consensus 439 DgtIrlWD~~----g~~l~tl~--~H~-----------~~V~sls~d--G~~LasGs~D-gtIrlWD~~g~~i~~l~gH~ 498 (838)
+..|..+|+. ++.+.... ... ...+.++.| |+--++++.. +.|...|..|+.+..|....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 5668889977 65543332 111 235667765 6655567788 88888888877544443211
Q ss_pred c------CEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 499 S------PVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 499 ~------~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
. ..+.|+ +||..|+.....+.+..+|+.
T Consensus 179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 133555 578777766558878777765
No 343
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=49.92 E-value=2.7e+02 Score=29.79 Aligned_cols=162 Identities=9% Similarity=0.107 Sum_probs=82.0
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-------CCCcEEE
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-------RDGRIMC 217 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-------~DGtIrv 217 (838)
|-+-++..|..|+++....+.. .-.|+ .++. ..-|..-..|++.++++--+ -.|.+.+
T Consensus 120 L~lVT~taVyHWs~~~~s~P~k-----vFdR~---------~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 120 VALVTDNAVYHWSMEGESQPVK-----MFDRH---------SSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp EEEEESSEEEEEESSTTCCCEE-----EEECC---------GGGT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCcEEEEcccCCCCCce-----eeecc---------hhcc-cceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 3335788999999864211110 00011 1122 44577777888888765433 2357889
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCC---CEE-Ee---eCCCcEEEEECCCc-ceeeecCCCceeeeEEE
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLW-SG---SEGGGIKIWPWEAI-EKALSLKPEERHTAALI 289 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~-Sg---S~DgtIrvWd~~~~-~~~~~~~~~~~~~~~~~ 289 (838)
+..+. +..+.+.||.+.-.++.+..+. .|. -+ ...+.+.|-++... ... .+.......+
T Consensus 185 YS~er---------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi- 251 (365)
T 2xzh_A 185 YSVDR---------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDV- 251 (365)
T ss_dssp EETTT---------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEE-
T ss_pred Eeecc---------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCccccccee-
Confidence 99987 4567789997766555443322 232 22 22356666666332 000 0000010100
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
...... ...--.++..++.-+.|.--+ .+-|.++|+.||.++-.-
T Consensus 252 ----------~fppea----~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 252 ----------FFPPEA----QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp ----------CCCTTC----TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----------eCCccc----cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 000000 011123334444444444443 577999999999997543
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.18 E-value=57 Score=39.99 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~ 224 (838)
.+.+.+++..++...|+|=+.|+++|+|++.++.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 4567888888888999999999999999999984
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=45.45 E-value=1.4e+02 Score=38.32 Aligned_cols=100 Identities=11% Similarity=0.190 Sum_probs=56.8
Q ss_pred EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE-------eCCCcEEEEE
Q 003217 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-------HRDGRIMCWK 219 (838)
Q Consensus 147 ~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG-------s~DGtIrvWd 219 (838)
+-++..|..|++.....+.. .-.|+ .++. ..-|..-..|++.++++.- .-.|.+.+++
T Consensus 121 lVT~~aVyHW~~~~~s~P~k-----~fdR~---------~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 121 LVTDNAVYHWSMEGESQPVK-----MFDRH---------SSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred EEcCCeEEEeccCCCCccHH-----HHhcc---------hhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeee
Confidence 35789999999954211110 00011 1122 3457777778888876632 2457888999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecC---CCEEE----eeCCCcEEEEECC
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GDLWS----GSEGGGIKIWPWE 270 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d---G~L~S----gS~DgtIrvWd~~ 270 (838)
.+.+ ..+.+.||.+.-..+.+..+ ..|.. ...++.+.|-++.
T Consensus 186 ~er~---------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~ 234 (1630)
T 1xi4_A 186 VDRK---------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (1630)
T ss_pred cccc---------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecC
Confidence 8873 45667888776655554322 12321 1223567777664
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=44.68 E-value=1.5e+02 Score=31.53 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=44.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe----ccccccEEEEEEecC----CCEEE---eeCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW----QAHRGPVLSLCISSY----GDLWS---GSEG 261 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l----~gH~~~V~slafs~d----G~L~S---gS~D 261 (838)
.-..|+|.|||+++++--..|.|++++..++. ...+..+ ..-.+....|+|+|| |.|+. ...+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~------~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGR------KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCC------EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCc------EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 45789999999877766558999998865542 0112211 123567899999995 66642 2334
Q ss_pred CcEEEEECC
Q 003217 262 GGIKIWPWE 270 (838)
Q Consensus 262 gtIrvWd~~ 270 (838)
+.|--|.+.
T Consensus 107 ~~v~R~~~~ 115 (347)
T 3das_A 107 NRIVRMLYD 115 (347)
T ss_dssp EEEEEEEBC
T ss_pred CEEEEEEeC
Confidence 444444443
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=40.55 E-value=1.8e+02 Score=32.13 Aligned_cols=58 Identities=7% Similarity=0.106 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc------ccccEEEEEEec----CCCEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA------HRGPVLSLCISS----YGDLW 256 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g------H~~~V~slafs~----dG~L~ 256 (838)
.-..|+|+|+|+++++-...+.|++++..++. ......+.. ..+....|+|+| ++.|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGS------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCC------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc------EeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 45689999999866664433478888765442 122222221 246788999999 46664
No 348
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=39.33 E-value=5.4 Score=44.68 Aligned_cols=18 Identities=50% Similarity=0.999 Sum_probs=15.6
Q ss_pred CcCcccEEEEeccceeee
Q 003217 758 ELSEADMVIFLGDFNYRL 775 (838)
Q Consensus 758 ~~~~~d~vf~~GDlNyRi 775 (838)
+|.+++.|+|=||||||=
T Consensus 373 ~L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 373 DLQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HHTTCSEEEEEHHHHHHH
T ss_pred HHhhCcEEEEecchhhhh
Confidence 357889999999999993
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=39.00 E-value=3.4e+02 Score=27.91 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEe----eCCeEEEEeCCCcccccccccccCEEEEEeCCCEEEEEc
Q 003217 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY----MNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLA 515 (838)
Q Consensus 440 gtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs----~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l~S~S 515 (838)
..|+..++.|.....+. ......++++|++|+-.. ....|..-++.|.-...+..|.. ..+.++++.|+..+
T Consensus 88 ~~Iy~i~~dg~~~~~l~--~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLD--PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEEEEETTSCCCEEEE--CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred CeEEEEeCCCCcceEee--cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence 46788888665444443 234457788999888665 34567777887765555554433 34567888888776
Q ss_pred C-CCCeee
Q 003217 516 N-HGGIRG 522 (838)
Q Consensus 516 ~-DgtIrl 522 (838)
. ...|.+
T Consensus 164 ~g~~~Iy~ 171 (302)
T 3s25_A 164 PKNGQLYR 171 (302)
T ss_dssp TTTCCEEE
T ss_pred CCCceEEE
Confidence 5 344433
No 350
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=34.31 E-value=1.5e+02 Score=31.69 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCCCCEEEEEe---CC------------CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-
Q 003217 191 VSSVMCMVGDEASGVVWSGH---RD------------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD- 254 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs---~D------------GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~- 254 (838)
-.....++++++|+..++.. .| ..-++|..+.+ + ...+...-..-+.|+|||||+
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--------~-~~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--------D-VRVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--------C-CEEEEEEESSEEEEEECTTSSE
T ss_pred CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--------e-EEEeecCCcccCcceECCCCCE
Confidence 34678899999988777654 12 23455555443 1 111212223458999999997
Q ss_pred EE-EeeCCCcEEEEECC
Q 003217 255 LW-SGSEGGGIKIWPWE 270 (838)
Q Consensus 255 L~-SgS~DgtIrvWd~~ 270 (838)
|+ +-+..+.|..++++
T Consensus 235 lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCeEEEEEEC
Confidence 54 55677899999885
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=34.24 E-value=2.3e+02 Score=30.03 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=49.9
Q ss_pred CCCcEEEEECCCeEEEEcC-C-CCeeeEe--ecCCccEEEEEEc---CCEEEEEeeCC----eEEEEeCCCcc---ccc-
Q 003217 429 IDGMIWTGGANGLLLQWDP-N-GNRLQDF--QYLPFAVQCLCTF---GSQIWVGYMNG----IVQVLDLEGNL---LGG- 493 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl--~~H~~~V~sls~d---G~~LasGs~Dg----tIrlWD~~g~~---i~~- 493 (838)
.++.||.|+..| +.+.+. . |+..+.+ ......|.+|+.| ...||+|+..| .|...+-.|+. +..
T Consensus 21 ~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 21 GPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRP 99 (394)
T ss_dssp SCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBC
T ss_pred CCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcc
Confidence 356799999877 444443 2 3333322 1224578999886 46888888776 66665444432 211
Q ss_pred --ccc--------cccCEEEEEeC----CCEEEEEcCCCCe
Q 003217 494 --WVA--------HSSPVIKMAVG----AGYIFTLANHGGI 520 (838)
Q Consensus 494 --l~g--------H~~~V~sla~d----g~~l~S~S~DgtI 520 (838)
+.. +...|.+|+++ ++.++.+...+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl 140 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGL 140 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcE
Confidence 111 12347778764 4556555555544
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.94 E-value=1e+02 Score=37.77 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 313 DIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
.+.+++..++...+++.+ |.++|+|++.+|+++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 345555555666777665 7899999999999987653
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.32 E-value=46 Score=41.72 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~ 224 (838)
.+.+.+++..++.+.|++=+.|+++|+|++.++.
T Consensus 237 ~~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 237 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp TTCBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred cceeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 3455666777788999999999999999999984
No 354
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=32.89 E-value=74 Score=33.84 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe---ccccccEEEEEEecC----CCEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---QAHRGPVLSLCISSY----GDLWS 257 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l---~gH~~~V~slafs~d----G~L~S 257 (838)
.-..|+++|+|+ |+.+..+|.|++++. ++ . +....+ ..-......|+|+|+ |.|+.
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G-----~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SG-----K--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS-SC-----E--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CC-----c--eEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence 456899999987 555677799998873 33 0 122221 112356789999997 66653
No 355
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=30.88 E-value=2.4e+02 Score=29.61 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEee-------cCCccEEEEEEc-----CCEEEEEeeC--------C
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQ-------YLPFAVQCLCTF-----GSQIWVGYMN--------G 479 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~-------~H~~~V~sls~d-----G~~LasGs~D--------g 479 (838)
....+++.|||+ |+.+...|.|++++.+|+....+. ........|+++ +.+|++.... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 346789999999 999988999999987664322111 112345667664 5677766532 3
Q ss_pred eEEEEeCC
Q 003217 480 IVQVLDLE 487 (838)
Q Consensus 480 tIrlWD~~ 487 (838)
.|..|+.+
T Consensus 99 ~v~r~~~~ 106 (353)
T 2g8s_A 99 AVGYGRLS 106 (353)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 56666653
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=30.64 E-value=1.5e+02 Score=30.69 Aligned_cols=83 Identities=8% Similarity=0.001 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEee-CCeEEEEeCCCcccccc-cccccCEEEEEeCCCEEEEEcC
Q 003217 439 NGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM-NGIVQVLDLEGNLLGGW-VAHSSPVIKMAVGAGYIFTLAN 516 (838)
Q Consensus 439 DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~-DgtIrlWD~~g~~i~~l-~gH~~~V~sla~dg~~l~S~S~ 516 (838)
+..|..-++.|...+.+..+.. ..+.++|+.|+-.+. ...|.+-++.|...+.+ .+... ..+.+++++|+....
T Consensus 128 ~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~--~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 128 ATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY--KPVVLDDTNVYYMDV 203 (302)
T ss_dssp CEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE--EEEEEETTEEEEEEG
T ss_pred CceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc--ceeeecCCEEEEEEc
Confidence 4456666677766666665543 345778887775554 67888889886533332 22111 123468888887655
Q ss_pred CCCeeeeec
Q 003217 517 HGGIRGWNV 525 (838)
Q Consensus 517 DgtIrlWdl 525 (838)
++.-+|+.+
T Consensus 204 ~~~~~I~~~ 212 (302)
T 3s25_A 204 NRDNAIVHV 212 (302)
T ss_dssp GGTTEEEEE
T ss_pred CCCcEEEEE
Confidence 443455543
No 357
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=29.60 E-value=1.3e+02 Score=32.23 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCCEEEee
Q 003217 193 SVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGS 259 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS 259 (838)
--+.+++|||++.|+.+. ..+.|.+|++... ........+ .-.+..-.+++++ +|.||.+.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-----g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHAN-----WTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-----SCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCC-----CcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence 456799999998777765 5678999998642 011222233 2245667889999 59988754
No 358
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=25.95 E-value=2e+02 Score=30.52 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=21.0
Q ss_pred CCEEEEeCC-CcEEEEeccCccEEEEEec
Q 003217 323 RAKVWSAGF-LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 323 ~~~V~s~s~-~tI~lWD~~tg~~l~~l~~ 350 (838)
+.+|..++. +.+.-.|++||+.+..+..
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 456666664 5788899999999888754
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.91 E-value=1.1e+02 Score=38.14 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=24.6
Q ss_pred EEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 317 LLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 317 las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
++...+...+++.+ |.++|+||+.+++++.+..
T Consensus 243 ~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 243 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34444556676665 7899999999999988754
No 360
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=21.72 E-value=7.5e+02 Score=26.34 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=43.4
Q ss_pred CeEEEEcCCC--CeeeEeecCCc----cEEEEEE--cCCEEEEEe-------eCCeEEEEeCCCcccccccccccCEEEE
Q 003217 440 GLLLQWDPNG--NRLQDFQYLPF----AVQCLCT--FGSQIWVGY-------MNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 440 gtIrlWD~~g--~~l~tl~~H~~----~V~sls~--dG~~LasGs-------~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (838)
..|.-|++.| ...+.|.-|.. .|..... +.++++..+ -.|.++||..+.+..+.+.||...-..+
T Consensus 126 taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~ 205 (365)
T 2xzh_A 126 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQF 205 (365)
T ss_dssp SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEE
T ss_pred CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEE
Confidence 4577787744 45566655432 3444333 345444322 2478999999988999999998766555
Q ss_pred EeCC
Q 003217 505 AVGA 508 (838)
Q Consensus 505 a~dg 508 (838)
..+|
T Consensus 206 ~~~g 209 (365)
T 2xzh_A 206 KMEG 209 (365)
T ss_dssp CCTT
T ss_pred ecCC
Confidence 5443
No 361
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=20.71 E-value=7.5e+02 Score=26.89 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCcEEEEECCC-eEEEEcC-CCCe--eeEeec------CCccEEEEEEc-----CCEEEEEee
Q 003217 420 RRTEALTTSIDGMIWTGGANG-LLLQWDP-NGNR--LQDFQY------LPFAVQCLCTF-----GSQIWVGYM 477 (838)
Q Consensus 420 ~~v~ala~S~dg~l~Sgs~Dg-tIrlWD~-~g~~--l~tl~~------H~~~V~sls~d-----G~~LasGs~ 477 (838)
.....+++.|||+|+.+...+ .|++++. +|+. +..+.. .....+.|+++ +.+|++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 345689999999999888875 6888887 4543 222221 13456677765 667777664
No 362
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.16 E-value=9.1e+02 Score=26.76 Aligned_cols=70 Identities=10% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCeEEEEcCCC--CeeeEeecCCc----cEEEEEE--cCCEEEEEe-------eCCeEEEEeCCCcccccccccccCEEE
Q 003217 439 NGLLLQWDPNG--NRLQDFQYLPF----AVQCLCT--FGSQIWVGY-------MNGIVQVLDLEGNLLGGWVAHSSPVIK 503 (838)
Q Consensus 439 DgtIrlWD~~g--~~l~tl~~H~~----~V~sls~--dG~~LasGs-------~DgtIrlWD~~g~~i~~l~gH~~~V~s 503 (838)
+..|.-|++.| ...+.|.-|.. .|..... +.++++..+ -.|.++||..+.+..+.+.||...-.+
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 203 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEE
T ss_pred CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEE
Confidence 34577777743 45555654432 3443333 455444322 257899999998899999999887776
Q ss_pred EEeCC
Q 003217 504 MAVGA 508 (838)
Q Consensus 504 la~dg 508 (838)
+..+|
T Consensus 204 ~~~~g 208 (494)
T 1bpo_A 204 FKMEG 208 (494)
T ss_dssp EECTT
T ss_pred EecCC
Confidence 66554
Done!