BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003218
         (838 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VEN|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz
 pdb|3VEO|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
           Complex With Carbamoyl Phosphate
 pdb|3VES|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
           Complex With Ampcpp And Carbamoyl Phosphate
 pdb|3VET|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
           Complex With Tobramycin, Carbamoyl Phosphate And Adp
 pdb|3VEW|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
           Complex With Adp
          Length = 576

 Score = 33.5 bits (75), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 133 DIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFF 166
           D Q EE+C  +      K+T     PGAW LGFF
Sbjct: 143 DGQGEEECVTLAHAEGGKITVLDTVPGAWSLGFF 176


>pdb|3VF4|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz S530a
           Variant In Complex With Carbamoyl Phosphate And Adp
          Length = 576

 Score = 33.5 bits (75), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 133 DIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFF 166
           D Q EE+C  +      K+T     PGAW LGFF
Sbjct: 143 DGQGEEECVTLAHAEGGKITVLDTVPGAWSLGFF 176


>pdb|3VF2|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz M473i
           Variant In Complex With Carbamoyl Phosphate And Adp
          Length = 576

 Score = 33.5 bits (75), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 133 DIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFF 166
           D Q EE+C  +      K+T     PGAW LGFF
Sbjct: 143 DGQGEEECVTLAHAEGGKITVLDTVPGAWSLGFF 176


>pdb|3VER|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
           Complex With Carbamoyl Adenylate Intermediate
          Length = 576

 Score = 33.5 bits (75), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 133 DIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFF 166
           D Q EE+C  +      K+T     PGAW LGFF
Sbjct: 143 DGQGEEECVTLAHAEGGKITVLDTVPGAWSLGFF 176


>pdb|3VEZ|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz K443a
           Variant In Complex With Atp, Adp And Carbamoyl Phosphate
          Length = 576

 Score = 33.5 bits (75), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 133 DIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFF 166
           D Q EE+C  +      K+T     PGAW LGFF
Sbjct: 143 DGQGEEECVTLAHAEGGKITVLDTVPGAWSLGFF 176


>pdb|3VEX|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz H14n
           Variant In Complex With Carbamoyl Adenylate Intermediate
          Length = 576

 Score = 33.5 bits (75), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 133 DIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFF 166
           D Q EE+C  +      K+T     PGAW LGFF
Sbjct: 143 DGQGEEECVTLAHAEGGKITVLDTVPGAWSLGFF 176


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,537,438
Number of Sequences: 62578
Number of extensions: 952064
Number of successful extensions: 2035
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2028
Number of HSP's gapped (non-prelim): 15
length of query: 838
length of database: 14,973,337
effective HSP length: 107
effective length of query: 731
effective length of database: 8,277,491
effective search space: 6050845921
effective search space used: 6050845921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)