Query 003219
Match_columns 838
No_of_seqs 417 out of 1735
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 5.8E-89 1.3E-93 704.5 22.4 229 337-568 1-229 (229)
2 PF01852 START: START domain; 99.7 2.7E-17 5.9E-22 166.6 14.9 202 342-568 1-205 (206)
3 smart00234 START in StAR and p 99.7 1.4E-15 3.1E-20 154.5 19.4 202 343-569 2-206 (206)
4 KOG0842 Transcription factor t 99.7 1.3E-16 2.8E-21 171.7 7.3 69 129-197 148-216 (307)
5 KOG0483 Transcription factor H 99.6 5.2E-16 1.1E-20 158.7 5.8 79 138-216 54-132 (198)
6 KOG0485 Transcription factor N 99.6 1.5E-15 3.3E-20 154.0 7.2 65 130-194 100-164 (268)
7 KOG0488 Transcription factor B 99.6 1E-15 2.2E-20 166.7 5.5 66 130-195 168-233 (309)
8 KOG0489 Transcription factor z 99.6 7.5E-16 1.6E-20 164.5 3.0 65 132-196 157-221 (261)
9 KOG0843 Transcription factor E 99.5 2.5E-15 5.3E-20 149.2 4.2 65 133-197 101-165 (197)
10 KOG0487 Transcription factor A 99.5 6.3E-15 1.4E-19 158.9 7.1 65 132-196 233-297 (308)
11 KOG0494 Transcription factor C 99.5 4.4E-15 9.6E-20 153.8 5.5 69 138-206 145-213 (332)
12 KOG0850 Transcription factor D 99.5 3.8E-15 8.3E-20 152.8 4.8 74 125-198 113-186 (245)
13 KOG0484 Transcription factor P 99.5 2.7E-15 5.9E-20 136.8 1.8 65 130-194 13-77 (125)
14 KOG0848 Transcription factor C 99.5 1.3E-14 2.9E-19 151.1 2.5 66 132-197 197-262 (317)
15 KOG0492 Transcription factor M 99.5 5.4E-14 1.2E-18 142.2 6.1 65 130-194 140-204 (246)
16 KOG2251 Homeobox transcription 99.4 5.1E-14 1.1E-18 144.1 4.7 67 130-196 33-99 (228)
17 PF00046 Homeobox: Homeobox do 99.4 8E-14 1.7E-18 114.9 3.6 57 135-191 1-57 (57)
18 KOG0844 Transcription factor E 99.3 4.7E-13 1E-17 141.5 3.3 65 130-194 177-241 (408)
19 KOG0493 Transcription factor E 99.3 6.5E-13 1.4E-17 138.0 4.3 59 135-193 247-305 (342)
20 smart00389 HOX Homeodomain. DN 99.2 4.4E-12 9.6E-17 103.7 3.3 55 136-190 2-56 (56)
21 cd00086 homeodomain Homeodomai 99.2 5.5E-12 1.2E-16 103.7 3.8 56 136-191 2-57 (59)
22 KOG0491 Transcription factor B 99.2 1.2E-12 2.7E-17 128.3 -0.2 65 133-197 99-163 (194)
23 KOG0486 Transcription factor P 99.2 7.2E-12 1.6E-16 133.6 5.2 62 132-193 110-171 (351)
24 COG5576 Homeodomain-containing 99.2 6.2E-12 1.4E-16 124.8 4.3 65 133-197 50-114 (156)
25 TIGR01565 homeo_ZF_HD homeobox 99.2 1.2E-11 2.7E-16 103.5 5.2 53 134-186 1-57 (58)
26 cd00177 START Lipid-binding ST 99.2 3E-10 6.4E-15 112.7 15.9 189 346-565 2-190 (193)
27 KOG4577 Transcription factor L 99.2 2.9E-11 6.3E-16 127.4 5.8 77 134-210 167-243 (383)
28 KOG3802 Transcription factor O 99.1 3E-11 6.5E-16 133.1 4.6 63 131-193 291-353 (398)
29 KOG0847 Transcription factor, 99.1 1.9E-11 4.2E-16 124.5 2.1 65 130-194 163-227 (288)
30 cd08871 START_STARD10-like Lip 99.0 2.3E-08 5E-13 104.1 20.1 200 346-580 10-213 (222)
31 cd08868 START_STARD1_3_like Ch 98.9 3.7E-08 8E-13 101.7 16.9 196 340-570 6-208 (208)
32 cd08867 START_STARD4_5_6-like 98.9 6.6E-08 1.4E-12 99.6 17.9 195 340-567 3-205 (206)
33 KOG0490 Transcription factor, 98.9 8.7E-10 1.9E-14 114.1 3.8 64 131-194 57-120 (235)
34 cd08904 START_STARD6-like Lipi 98.7 3.1E-07 6.7E-12 95.4 15.3 171 341-538 4-178 (204)
35 KOG0849 Transcription factor P 98.7 1E-08 2.2E-13 114.4 4.0 65 130-194 172-236 (354)
36 cd08903 START_STARD5-like Lipi 98.6 1.6E-06 3.4E-11 90.1 17.4 193 340-567 3-205 (208)
37 cd08909 START_STARD13-like C-t 98.5 5.9E-06 1.3E-10 86.0 17.1 129 393-538 48-178 (205)
38 KOG1168 Transcription factor A 98.5 1E-07 2.2E-12 101.1 3.9 62 132-193 307-368 (385)
39 cd08869 START_RhoGAP C-termina 98.4 6.3E-06 1.4E-10 84.9 15.5 168 345-543 4-174 (197)
40 cd08905 START_STARD1-like Chol 98.4 5.1E-06 1.1E-10 86.4 14.2 192 340-568 6-207 (209)
41 PLN00188 enhanced disease resi 98.4 3.9E-06 8.4E-11 99.6 14.8 129 397-540 227-365 (719)
42 cd08906 START_STARD3-like Chol 98.3 2.4E-05 5.3E-10 81.5 16.5 196 339-568 5-207 (209)
43 cd08902 START_STARD4-like Lipi 98.3 2.3E-05 4.9E-10 81.2 15.2 194 340-566 3-200 (202)
44 KOG0775 Transcription factor S 98.2 5.9E-07 1.3E-11 95.2 3.5 51 141-191 183-233 (304)
45 cd08910 START_STARD2-like Lipi 98.1 6.4E-05 1.4E-09 78.2 14.3 183 352-569 17-206 (207)
46 cd08877 START_2 Uncharacterize 98.0 0.00023 5E-09 74.0 15.8 200 340-568 3-213 (215)
47 cd08876 START_1 Uncharacterize 97.9 0.00029 6.2E-09 71.5 14.8 152 398-567 42-194 (195)
48 KOG0774 Transcription factor P 97.8 1.1E-05 2.3E-10 85.2 2.9 59 135-193 189-250 (334)
49 cd08874 START_STARD9-like C-te 97.7 0.00031 6.7E-09 73.3 12.5 131 390-541 43-181 (205)
50 cd08908 START_STARD12-like C-t 97.7 0.00053 1.1E-08 71.6 13.6 162 344-536 11-175 (204)
51 cd08870 START_STARD2_7-like Li 97.6 0.0025 5.4E-08 66.2 16.1 153 397-569 50-208 (209)
52 cd08907 START_STARD8-like C-te 97.6 0.00053 1.1E-08 71.4 10.9 166 344-538 11-178 (205)
53 PF05920 Homeobox_KN: Homeobox 97.5 2.2E-05 4.8E-10 61.4 0.5 34 155-188 7-40 (40)
54 KOG0490 Transcription factor, 97.4 0.00011 2.3E-09 76.4 4.1 65 130-194 149-213 (235)
55 cd08872 START_STARD11-like Cer 97.4 0.0056 1.2E-07 65.2 16.7 195 345-567 9-224 (235)
56 KOG2252 CCAAT displacement pro 97.3 0.00013 2.9E-09 84.1 3.8 61 130-190 416-476 (558)
57 cd08911 START_STARD7-like Lipi 97.3 0.0045 9.7E-08 64.4 14.7 152 398-569 46-206 (207)
58 cd08871 START_STARD10-like Lip 96.9 0.046 9.9E-07 57.2 17.5 175 613-835 21-201 (222)
59 cd08873 START_STARD14_15-like 96.9 0.0093 2E-07 63.7 12.4 123 393-534 78-203 (235)
60 cd08869 START_RhoGAP C-termina 96.6 0.12 2.6E-06 53.4 17.0 174 613-836 17-196 (197)
61 cd08907 START_STARD8-like C-te 96.5 0.19 4.1E-06 52.8 18.0 174 612-835 24-203 (205)
62 cd08904 START_STARD6-like Lipi 96.4 0.17 3.7E-06 53.0 16.8 174 614-834 21-203 (204)
63 cd08913 START_STARD14-like Lip 96.2 0.067 1.5E-06 57.4 13.0 126 402-543 86-215 (240)
64 cd08914 START_STARD15-like Lip 96.1 0.054 1.2E-06 58.0 11.8 129 398-543 79-211 (236)
65 cd08874 START_STARD9-like C-te 96.1 0.073 1.6E-06 55.8 12.4 130 612-765 19-157 (205)
66 KOG1146 Homeobox protein [Gene 96.0 0.0041 8.8E-08 78.1 3.4 61 134-194 903-963 (1406)
67 cd08876 START_1 Uncharacterize 95.3 1.3 2.9E-05 44.9 17.7 59 612-679 14-72 (195)
68 cd00177 START Lipid-binding ST 95.1 1.3 2.9E-05 43.8 16.7 147 615-804 15-165 (193)
69 cd08877 START_2 Uncharacterize 94.9 1.5 3.3E-05 45.6 17.2 117 601-734 10-129 (215)
70 cd08868 START_STARD1_3_like Ch 94.8 1.5 3.2E-05 45.6 16.8 132 614-766 23-161 (208)
71 cd08867 START_STARD4_5_6-like 94.7 3.1 6.7E-05 43.1 19.0 145 595-765 8-160 (206)
72 cd08870 START_STARD2_7-like Li 94.6 1.4 3E-05 46.0 15.9 106 615-734 22-133 (209)
73 smart00234 START in StAR and p 94.6 2 4.3E-05 43.8 16.9 134 614-765 18-157 (206)
74 cd08906 START_STARD3-like Chol 94.5 2.9 6.3E-05 43.9 18.0 130 614-764 24-160 (209)
75 KOG0773 Transcription factor M 94.2 0.036 7.9E-07 61.8 3.4 61 134-194 239-302 (342)
76 cd08903 START_STARD5-like Lipi 94.2 1.6 3.6E-05 45.5 15.4 176 613-835 20-206 (208)
77 cd08911 START_STARD7-like Lipi 93.7 2 4.2E-05 44.9 14.9 180 613-835 19-205 (207)
78 cd08908 START_STARD12-like C-t 93.4 4.2 9.2E-05 42.8 16.7 172 616-835 28-202 (204)
79 PF11569 Homez: Homeodomain le 93.3 0.025 5.3E-07 47.6 0.1 42 145-186 9-50 (56)
80 cd08914 START_STARD15-like Lip 92.8 1.3 2.8E-05 47.7 12.1 58 612-680 53-110 (236)
81 cd08873 START_STARD14_15-like 92.7 1.1 2.5E-05 48.0 11.5 66 613-691 53-118 (235)
82 PF01852 START: START domain; 91.9 4.7 0.0001 41.0 14.6 150 597-765 2-157 (206)
83 cd08909 START_STARD13-like C-t 89.5 22 0.00048 37.6 17.1 173 615-835 27-203 (205)
84 cd08875 START_ArGLABRA2_like C 89.2 13 0.00027 40.1 15.2 185 593-811 3-204 (229)
85 PRK09413 IS2 repressor TnpA; R 88.8 1.2 2.5E-05 42.8 6.6 40 139-183 11-51 (121)
86 cd05018 CoxG Carbon monoxide d 88.4 7.2 0.00016 36.6 11.7 119 402-548 6-124 (144)
87 cd08860 TcmN_ARO-CYC_like N-te 88.3 9.9 0.00021 37.5 12.9 140 401-569 5-144 (146)
88 cd08864 SRPBCC_DUF3074 DUF3074 87.4 4.8 0.0001 42.4 10.6 103 432-542 76-184 (208)
89 cd08866 SRPBCC_11 Ligand-bindi 87.3 11 0.00024 35.8 12.3 132 401-568 3-143 (144)
90 cd08905 START_STARD1-like Chol 86.5 39 0.00084 35.4 16.8 196 593-835 5-207 (209)
91 KOG4196 bZIP transcription fac 85.7 2.6 5.7E-05 41.2 6.9 86 139-258 22-108 (135)
92 KOG2761 START domain-containin 85.6 8.1 0.00018 41.2 11.1 113 406-532 63-183 (219)
93 cd08910 START_STARD2-like Lipi 85.2 1.5 3.2E-05 45.9 5.5 93 612-721 22-116 (207)
94 KOG3623 Homeobox transcription 84.8 0.55 1.2E-05 56.6 2.3 47 146-192 568-614 (1007)
95 cd07813 COQ10p_like Coenzyme Q 84.0 13 0.00029 35.2 11.1 135 401-569 3-137 (138)
96 cd07819 SRPBCC_2 Ligand-bindin 83.4 30 0.00065 32.2 13.1 132 401-566 6-139 (140)
97 cd08913 START_STARD14-like Lip 82.3 2.1 4.6E-05 46.1 5.3 58 612-680 56-113 (240)
98 PRK10724 hypothetical protein; 81.5 33 0.0007 34.6 13.2 137 400-570 18-154 (158)
99 KOG4005 Transcription factor X 80.7 9.3 0.0002 41.0 9.1 60 183-256 82-143 (292)
100 PF04218 CENP-B_N: CENP-B N-te 80.4 1.5 3.3E-05 36.3 2.7 47 135-186 1-47 (53)
101 PF02183 HALZ: Homeobox associ 78.2 4 8.6E-05 33.1 4.4 40 193-260 2-41 (45)
102 cd07817 SRPBCC_8 Ligand-bindin 78.1 51 0.0011 30.7 12.7 134 402-568 5-138 (139)
103 cd08872 START_STARD11-like Cer 77.8 39 0.00085 36.2 13.1 98 611-722 22-122 (235)
104 cd08861 OtcD1_ARO-CYC_like N-t 77.6 16 0.00036 34.5 9.3 27 402-428 4-30 (142)
105 cd08902 START_STARD4-like Lipi 77.5 4.8 0.0001 42.4 5.9 59 613-680 21-79 (202)
106 cd07821 PYR_PYL_RCAR_like Pyra 77.4 37 0.0008 31.3 11.5 134 403-568 7-140 (140)
107 PRK15422 septal ring assembly 76.8 7.2 0.00016 35.3 5.9 61 190-264 12-76 (79)
108 PF06005 DUF904: Protein of un 72.4 9.1 0.0002 34.0 5.5 49 194-263 16-68 (72)
109 PF10604 Polyketide_cyc2: Poly 69.9 92 0.002 28.7 14.5 35 402-440 7-41 (139)
110 TIGR00219 mreC rod shape-deter 68.7 6 0.00013 43.6 4.4 42 197-255 67-108 (283)
111 COG3074 Uncharacterized protei 68.2 14 0.00031 32.7 5.6 55 196-264 18-76 (79)
112 cd07822 SRPBCC_4 Ligand-bindin 67.0 60 0.0013 30.0 10.3 51 513-568 91-141 (141)
113 PF12711 Kinesin-relat_1: Kine 62.6 14 0.00031 34.0 4.9 46 201-261 22-67 (86)
114 PRK13922 rod shape-determining 61.8 9.8 0.00021 41.3 4.4 40 197-254 70-109 (276)
115 KOG4343 bZIP transcription fac 61.4 16 0.00034 43.4 6.0 19 239-257 317-335 (655)
116 PF01527 HTH_Tnp_1: Transposas 58.7 1.9 4.1E-05 37.2 -1.4 43 136-182 2-44 (76)
117 KOG0971 Microtubule-associated 58.5 25 0.00054 44.2 7.3 57 200-262 336-392 (1243)
118 cd07818 SRPBCC_1 Ligand-bindin 58.1 1.1E+02 0.0023 29.2 10.5 51 515-568 99-149 (150)
119 PLN00188 enhanced disease resi 57.1 39 0.00084 41.8 8.6 158 612-804 195-361 (719)
120 cd08865 SRPBCC_10 Ligand-bindi 55.2 1.7E+02 0.0037 26.8 12.7 136 402-568 4-139 (140)
121 TIGR03752 conj_TIGR03752 integ 53.3 17 0.00038 42.7 4.7 55 194-261 78-132 (472)
122 KOG1146 Homeobox protein [Gene 50.3 7.1 0.00015 50.6 1.1 95 134-241 444-539 (1406)
123 PF04880 NUDE_C: NUDE protein, 46.8 19 0.00041 37.0 3.3 20 239-258 25-44 (166)
124 KOG0709 CREB/ATF family transc 45.2 1.7E+02 0.0038 34.6 11.0 97 138-262 218-317 (472)
125 smart00340 HALZ homeobox assoc 44.7 20 0.00043 28.9 2.4 20 241-260 15-34 (44)
126 smart00338 BRLZ basic region l 44.0 73 0.0016 27.1 6.0 39 195-254 25-63 (65)
127 COG1792 MreC Cell shape-determ 40.8 50 0.0011 36.6 5.7 41 196-254 66-106 (284)
128 PF06785 UPF0242: Uncharacteri 39.9 37 0.00079 38.4 4.4 74 181-266 54-127 (401)
129 cd07823 SRPBCC_5 Ligand-bindin 39.4 15 0.00032 35.6 1.2 26 652-677 3-28 (146)
130 PRK14872 rod shape-determining 38.9 27 0.00059 39.7 3.3 41 197-255 58-98 (337)
131 PF06156 DUF972: Protein of un 38.7 47 0.001 31.7 4.4 20 239-258 37-56 (107)
132 PF00170 bZIP_1: bZIP transcri 37.6 1E+02 0.0023 26.1 6.0 23 195-217 25-47 (64)
133 COG4026 Uncharacterized protei 37.4 68 0.0015 34.5 5.7 50 188-258 141-190 (290)
134 PF14389 Lzipper-MIP1: Leucine 37.0 1.8E+02 0.0039 26.8 7.7 71 187-260 6-76 (88)
135 PF07407 Seadorna_VP6: Seadorn 36.2 40 0.00088 38.0 4.0 23 197-219 33-55 (420)
136 cd07824 SRPBCC_6 Ligand-bindin 34.6 4.2E+02 0.0091 25.4 11.2 120 404-551 8-130 (146)
137 cd07819 SRPBCC_2 Ligand-bindin 33.8 32 0.00069 32.0 2.5 29 650-678 4-32 (140)
138 PF10604 Polyketide_cyc2: Poly 33.2 41 0.00089 31.1 3.1 29 650-678 4-32 (139)
139 cd08865 SRPBCC_10 Ligand-bindi 33.2 27 0.00059 32.2 1.9 28 651-678 2-29 (140)
140 PRK13169 DNA replication intia 32.8 64 0.0014 31.1 4.3 19 239-257 37-55 (110)
141 PRK00888 ftsB cell division pr 31.7 43 0.00093 31.8 2.9 42 177-219 16-57 (105)
142 PF15058 Speriolin_N: Sperioli 31.6 62 0.0013 34.1 4.2 39 199-259 8-46 (200)
143 cd07821 PYR_PYL_RCAR_like Pyra 31.1 37 0.0008 31.3 2.4 27 651-677 4-30 (140)
144 KOG4403 Cell surface glycoprot 30.5 1.2E+02 0.0027 35.5 6.7 26 339-365 398-423 (575)
145 cd06171 Sigma70_r4 Sigma70, re 30.4 30 0.00065 26.5 1.4 43 140-187 10-52 (55)
146 KOG3755 SATB1 matrix attachmen 30.4 13 0.00029 44.5 -0.8 58 136-193 693-758 (769)
147 PF14197 Cep57_CLD_2: Centroso 30.2 1.2E+02 0.0026 26.8 5.2 20 238-257 47-66 (69)
148 cd05018 CoxG Carbon monoxide d 30.2 28 0.00061 32.6 1.5 27 652-678 5-31 (144)
149 KOG3119 Basic region leucine z 30.0 81 0.0017 34.7 5.1 23 240-262 231-253 (269)
150 KOG2761 START domain-containin 29.9 25 0.00054 37.6 1.2 181 611-835 25-213 (219)
151 cd08866 SRPBCC_11 Ligand-bindi 29.8 35 0.00075 32.3 2.0 28 651-678 2-29 (144)
152 KOG4571 Activating transcripti 29.6 1.4E+02 0.0029 33.5 6.6 43 192-255 244-286 (294)
153 cd08901 SRPBCC_CalC_Aha1-like_ 29.6 33 0.00072 32.9 1.9 27 650-676 2-28 (136)
154 cd07817 SRPBCC_8 Ligand-bindin 29.4 39 0.00086 31.4 2.3 28 651-678 3-30 (139)
155 PRK03975 tfx putative transcri 29.0 58 0.0013 32.6 3.5 47 139-191 5-51 (141)
156 PF04967 HTH_10: HTH DNA bindi 27.9 55 0.0012 27.5 2.6 37 141-177 1-39 (53)
157 cd08862 SRPBCC_Smu440-like Lig 27.6 44 0.00096 31.0 2.3 30 649-678 2-31 (138)
158 cd07814 SRPBCC_CalC_Aha1-like 27.2 38 0.00082 31.5 1.8 28 651-678 3-30 (139)
159 PRK10884 SH3 domain-containing 27.1 2.9E+02 0.0062 29.4 8.4 19 201-219 130-148 (206)
160 cd07825 SRPBCC_7 Ligand-bindin 26.8 46 0.001 31.5 2.3 26 652-677 4-29 (144)
161 cd07812 SRPBCC START/RHO_alpha 26.2 45 0.00098 29.5 2.0 27 652-678 3-29 (141)
162 PRK06266 transcription initiat 25.8 64 0.0014 33.4 3.2 34 221-254 136-169 (178)
163 cd07818 SRPBCC_1 Ligand-bindin 25.7 1.2E+02 0.0027 28.8 5.1 32 650-681 4-35 (150)
164 PF05494 Tol_Tol_Ttg2: Toluene 25.1 1.7E+02 0.0038 29.3 6.2 56 434-494 85-140 (170)
165 TIGR00219 mreC rod shape-deter 25.1 96 0.0021 34.3 4.7 42 202-261 65-107 (283)
166 PRK00118 putative DNA-binding 24.7 1.7E+02 0.0037 27.9 5.6 48 140-192 17-64 (104)
167 KOG3119 Basic region leucine z 24.6 36 0.00078 37.4 1.2 26 239-264 223-248 (269)
168 PF04545 Sigma70_r4: Sigma-70, 24.5 52 0.0011 26.3 1.8 38 140-182 4-41 (50)
169 TIGR03752 conj_TIGR03752 integ 23.6 1.7E+02 0.0038 34.8 6.5 11 140-150 41-51 (472)
170 PF12824 MRP-L20: Mitochondria 23.5 1.6E+02 0.0035 30.2 5.6 44 139-184 84-127 (164)
171 PRK00888 ftsB cell division pr 23.4 93 0.002 29.5 3.6 37 181-217 26-62 (105)
172 PRK13729 conjugal transfer pil 22.8 1.7E+02 0.0038 34.8 6.3 57 186-256 66-122 (475)
173 cd07812 SRPBCC START/RHO_alpha 22.8 5.2E+02 0.011 22.6 11.3 35 402-440 4-38 (141)
174 TIGR02449 conserved hypothetic 22.8 2.4E+02 0.0052 24.9 5.7 18 200-217 11-28 (65)
175 KOG0288 WD40 repeat protein Ti 22.5 1.7E+02 0.0038 34.2 6.0 22 197-218 28-49 (459)
176 PF03364 Polyketide_cyc: Polyk 22.2 4.3E+02 0.0094 24.4 7.9 103 406-538 2-106 (130)
177 cd01106 HTH_TipAL-Mta Helix-Tu 21.9 2.3E+02 0.0049 26.2 5.8 36 138-186 36-71 (103)
178 cd07822 SRPBCC_4 Ligand-bindin 21.5 72 0.0016 29.4 2.5 26 652-677 4-29 (141)
179 cd07820 SRPBCC_3 Ligand-bindin 20.6 64 0.0014 30.8 1.9 26 652-677 3-28 (137)
180 KOG4343 bZIP transcription fac 20.5 1.1E+02 0.0024 36.8 4.0 22 199-220 312-333 (655)
181 KOG3156 Uncharacterized membra 20.4 2.5E+02 0.0055 30.2 6.3 47 195-261 93-139 (220)
182 cd00569 HTH_Hin_like Helix-tur 20.4 1E+02 0.0022 20.8 2.6 37 140-181 5-41 (42)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=5.8e-89 Score=704.47 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 003219 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (838)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~l 416 (838)
|++|+|||++||+||++||++++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999998777 6999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCCcC
Q 003219 417 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 496 (838)
Q Consensus 417 mD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~~ 496 (838)
||+++|.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|..+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 497 TSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 497 ~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
.+..+.++||||+|||||||||+||||| ||||||+|||++.+|.+||+|++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~Sk--VtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSK--VTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceE--EEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4434458999999999999999999999 999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=2.7e-17 Score=166.60 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 003219 342 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (838)
Q Consensus 342 ~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD~ 419 (838)
|+|+++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 5899999999999999999998875 332 2232222111 1246678899999999999999999998
Q ss_pred h-hhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCCcCCC
Q 003219 420 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (838)
Q Consensus 420 ~-~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~~~~ 498 (838)
. +|-.++- .+..++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.|+|+..|++.-...+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 9998844 47777777754 578888889999999999 9999999999999999999999998654433
Q ss_pred CCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 499 GAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 499 ~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
..+.++|+..++||++|++.++|.|+ ||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~--vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTR--VTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEE--EEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCce--EEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 13358999999999999999999999 999999999999999999999999999889999999988865
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.69 E-value=1.4e-15 Score=154.54 Aligned_cols=202 Identities=34% Similarity=0.526 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhh-HHHHhcCh
Q 003219 343 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 419 (838)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~-LVe~lmD~ 419 (838)
-|+.++.|+++++...+..|....+ .+ ..|.+.+ .+.+..+.+-|..++|...+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998764 22 1111111 1123557899999999999998 55666665
Q ss_pred hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCCcCCCC
Q 003219 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG 499 (838)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~ 499 (838)
.+...+-..+..++.++.++.+ ..|......+.. +| +..|||.++|++++.++|.|+|+..|++.-.. +.
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~ 138 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PP 138 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CC
Confidence 2333333334557888887643 233333333333 35 45599999999999999999999999986432 21
Q ss_pred CCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003219 500 APAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 569 (838)
Q Consensus 500 ~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 569 (838)
.+.++|+..++||++|+++++|.|+ |||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~--vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSK--VTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeE--EEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2358999999999999999999999 9999999999998889999999999999999999999999973
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.65 E-value=1.3e-16 Score=171.68 Aligned_cols=69 Identities=32% Similarity=0.442 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 129 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 129 ~~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
...++|||+|..|+..|+.+||+.|+..+|++..+|++||+.|.|++.||||||||||-|.||+++.++
T Consensus 148 t~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 148 TGKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred cccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 345677788888999999999999999999999999999999999999999999999999998776543
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.61 E-value=5.2e-16 Score=158.66 Aligned_cols=79 Identities=33% Similarity=0.512 Sum_probs=73.8
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHH
Q 003219 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 216 (838)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~ 216 (838)
+.|||.+|+..||+.|+...+..+.+|..||++|||.+|||+|||||||+|||.++...++..++.+++.|+.+|..+.
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999988766544
No 6
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.59 E-value=1.5e-15 Score=153.99 Aligned_cols=65 Identities=34% Similarity=0.436 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.+.+|||.|+.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+..
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHh
Confidence 35578889999999999999999999999999999999999999999999999999999998654
No 7
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=1e-15 Score=166.68 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
..+|+||.|+.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 346778899999999999999999999999999999999999999999999999999999987755
No 8
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.57 E-value=7.5e-16 Score=164.46 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
.+.||.|+.||..|+.+||+.|+.++|.++..|.|||..|.|+++||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45688899999999999999999999999999999999999999999999999999999866543
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.55 E-value=2.5e-15 Score=149.20 Aligned_cols=65 Identities=34% Similarity=0.478 Sum_probs=61.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
|.||.||.||.+|+..||..|+.++|..-.+|++||+.|+|++.||||||||||+|.||++.+.+
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~k 165 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQEDK 165 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHhh
Confidence 66888999999999999999999999999999999999999999999999999999999887753
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.54 E-value=6.3e-15 Score=158.86 Aligned_cols=65 Identities=38% Similarity=0.444 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
++.||||.-+|+.|+.+||+.|..|.|.+.+.|.+|++.|+|++|||||||||||+|+||..++.
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 55677888899999999999999999999999999999999999999999999999999887543
No 11
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.54 E-value=4.4e-15 Score=153.83 Aligned_cols=69 Identities=32% Similarity=0.451 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhhhhhHHHHhH
Q 003219 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (838)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene 206 (838)
|+.||..|+++||+.|++.+||+...|+-||.++.|++.+|+|||||||+||||+.++.......+|+-
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 788999999999999999999999999999999999999999999999999999999888777766654
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.54 E-value=3.8e-15 Score=152.82 Aligned_cols=74 Identities=27% Similarity=0.352 Sum_probs=66.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhhh
Q 003219 125 DLDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHEN 198 (838)
Q Consensus 125 ~~~~~~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~ 198 (838)
....++.+|.||.||.++.-||+.|.+.|+++.|+-..+|.+||..|||+..||||||||||.|.||..+..+.
T Consensus 113 ~~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~ 186 (245)
T KOG0850|consen 113 RRPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSG 186 (245)
T ss_pred eccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCC
Confidence 34455667778999999999999999999999999999999999999999999999999999999998774443
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.52 E-value=2.7e-15 Score=136.82 Aligned_cols=65 Identities=31% Similarity=0.533 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
..+|.||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.||+.+
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999997653
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.47 E-value=1.3e-14 Score=151.11 Aligned_cols=66 Identities=32% Similarity=0.415 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
+.|-|.|.++|..|..+||+.|..++|.++..+.|||.-|||+||||||||||||+|+||..+++-
T Consensus 197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 344567788999999999999999999999999999999999999999999999999998776654
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.46 E-value=5.4e-14 Score=142.19 Aligned_cols=65 Identities=38% Similarity=0.505 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
+.+..||.|+.||..|+..||+.|++.+|.++.+|.+++..|.|++.||||||||||+|.||.++
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 34445788999999999999999999999999999999999999999999999999999998654
No 16
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.45 E-value=5.1e-14 Score=144.07 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
..+|.||.||+||..|+++||.+|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 4567799999999999999999999999999999999999999999999999999999999877654
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.42 E-value=8e-14 Score=114.92 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
||+|+.||.+|+..||..|..++||+..++++||.++||++.||++||||||.++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 18
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.33 E-value=4.7e-13 Score=141.50 Aligned_cols=65 Identities=31% Similarity=0.375 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
...+-||.|+.||.+||..||+.|-+..|-++..|.+||..|+|++..|||||||||+|+|||..
T Consensus 177 a~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 177 ADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred ccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 34566889999999999999999999999999999999999999999999999999999998654
No 19
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.33 E-value=6.5e-13 Score=138.01 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
||.|+.||.+|++.|+..|++++|.++..|++||.+|+|.+.||||||||+|+|.||..
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56688899999999999999999999999999999999999999999999999999744
No 20
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.23 E-value=4.4e-12 Score=103.67 Aligned_cols=55 Identities=45% Similarity=0.786 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
+.|++++.+|+..||..|..++||+..++.+||+++||+..||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999998864
No 21
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.23 E-value=5.5e-12 Score=103.73 Aligned_cols=56 Identities=48% Similarity=0.832 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
+++..++.+|+..||..|..++||+..++.+||.++||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 22
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.23 E-value=1.2e-12 Score=128.30 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=60.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
+++|.|+.|+..|+..||+.|+..+|.+..+|.+||..|+|++.|||.||||||+|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 46778999999999999999999999999999999999999999999999999999998877654
No 23
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.22 E-value=7.2e-12 Score=133.61 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.|+||.|+.||..|+++||..|++++||+...|++||...+|++.+|++||.|||+||||+.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhh
Confidence 46778889999999999999999999999999999999999999999999999999999643
No 24
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.22 E-value=6.2e-12 Score=124.85 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
..+++|+|.|.+|+.+|++.|+.++||+...|.+|+..|+|+++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778899999999999999999999999999999999999999999999999998765543
No 25
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.22 E-value=1.2e-11 Score=103.53 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCC----CCHHHHHHHHHhhccccceeeecccchh
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 186 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (838)
+||.|+.||++|++.||.+|+.++| |+...|.+||.++||++++|||||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 26
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.22 E-value=3e-10 Score=112.66 Aligned_cols=189 Identities=18% Similarity=0.254 Sum_probs=138.3
Q ss_pred HHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcChhhhhhh
Q 003219 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEM 425 (838)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD~~~W~~~ 425 (838)
+|..+++.+.+.+ .-|-...+.+ +..-|.+.++.. ....-|..++|..++.++.++|+|.+....-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6798764432 122344444322 3467889999999999999999994433222
Q ss_pred ccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCCcCCCCCCCccc
Q 003219 426 FPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVN 505 (838)
Q Consensus 426 Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~~~~~~~ 505 (838)
.+ .+.+++.++.++. ...++|..+..|.| +..|||.++|++.+.++|.++|+..|+|.-. .+..+.++|
T Consensus 68 ~~-~~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR 136 (193)
T cd00177 68 DK-NFEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVR 136 (193)
T ss_pred hh-cceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEE
Confidence 22 2344555555542 27899999999999 9999999999999999999999999998741 122225799
Q ss_pred eeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 003219 506 CRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 565 (838)
Q Consensus 506 ~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR 565 (838)
++.+++|++|+++++|.|+ ||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 137 ~~~~~~~~~i~~~~~~~~~--vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 137 AEIKLSGWIIEPLDPGKTK--VTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEccEEEEEECCCCCEE--EEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 9999999999999999999 99999999886543 345666666666777766644
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.16 E-value=2.9e-11 Score=127.37 Aligned_cols=77 Identities=26% Similarity=0.408 Sum_probs=71.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhhhhhHHHHhHHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRA 210 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~ 210 (838)
.||.|+.+|..|++.|+..|+..++|-+..|++|+.++||.-|.|||||||||+|+||.++......+.|-+..++.
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsmK~ 243 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSMKR 243 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHhhc
Confidence 47788999999999999999999999999999999999999999999999999999999998888888887665543
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.13 E-value=3e-11 Score=133.08 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
..||||||+.++...+..||++|.+|++|+..++.+||.+|+|++..|+|||+|||.|.||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 347888999999999999999999999999999999999999999999999999999999643
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.12 E-value=1.9e-11 Score=124.54 Aligned_cols=65 Identities=34% Similarity=0.465 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
++.+++..|..|+..|+..||+.|+..+|+-..+|.+||..+|+++.||+|||||||+||||+..
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 44667778888999999999999999999999999999999999999999999999999998664
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.02 E-value=2.3e-08 Score=104.14 Aligned_cols=200 Identities=13% Similarity=0.197 Sum_probs=147.2
Q ss_pred HHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeE-EechhhHHHHhcCh---hh
Q 003219 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---NR 421 (838)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V-~~~~~~LVe~lmD~---~~ 421 (838)
+.+++|+.++..+ .-|-...+... .+.|.+. ..+...-.-|..+++ ...+..+.+.|+|. .+
T Consensus 10 ~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~----~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 10 ADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKN----PENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEee----CCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 7889999999754 47987643321 2223221 112333445666655 57888999999995 56
Q ss_pred hhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCCcCCCCCC
Q 003219 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAP 501 (838)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~~~ 501 (838)
|-..+ ..++.++.+.. ...++|..+..|-| |..|||.++|..+..+ |.++|+..|++.-. .|...
T Consensus 76 Wd~~~----~e~~~ie~~d~--------~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~~ 140 (222)
T cd08871 76 WDSNM----IESFDICQLNP--------NNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPRK 140 (222)
T ss_pred hhhhh----ceeEEEEEcCC--------CCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCCC
Confidence 66652 23666665542 24789999999988 8999999999998776 88899999987432 22223
Q ss_pred CccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 003219 502 AFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 580 (838)
Q Consensus 502 ~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerla~l~~~~ip~ 580 (838)
.++|.....+|++|++++++.|+ |||+-|++..-+ +|. -+++....-.+-.++..|+++|+.....++.+-|.
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~--vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCT--LTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEE--EEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999 999999988765 443 24666666777799999999999999998887764
No 31
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.92 E-value=3.7e-08 Score=101.65 Aligned_cols=196 Identities=15% Similarity=0.221 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHH-hcC
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-LMD 418 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~-lmD 418 (838)
-..+++.|++|++.+.. ++-|-...+.. +..+.|.+.. .| ..-.-|..++|...+.++++. |+|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57888999999999954 55897654221 0122222211 11 114578889999999998764 555
Q ss_pred h---hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecc-ccccccceeeEEeeeeeecCCeEEEEEEeccCC
Q 003219 419 P---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (838)
Q Consensus 419 ~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~-SPLVp~Re~~flRyckq~~~g~waVvDvSld~~ 494 (838)
. .+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 4 5676662 2244444443 2235666444333 3689999999999999866 6799999998732
Q ss_pred cCCCCCCCccceeecCCceeEeecCC--CceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 003219 495 RETSGAPAFVNCRRLPSGCVVQDMPN--GYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 570 (838)
Q Consensus 495 ~~~~~~~~~~~~~r~PSGclIq~~~n--G~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 570 (838)
. .|..+.++|+...++|++|+++++ +.|+ |+|+-|++..-+ +|.- ++++.+.-+.-.+++.|+++|+.|
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~--v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCN--FTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceE--EEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 1 122235899999999999999987 6799 999999987755 4432 377778888889999999998753
No 32
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.90 E-value=6.6e-08 Score=99.62 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC-
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 418 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD- 418 (838)
+-.+|..|.+|++++.. .+.-|....+.. +.+.|.+. ...+..-.-|..+.+..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~----~~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKP----STEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEec----CCCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 34688899999999987 447897753221 12222211 0112222358888888999999999998
Q ss_pred ----hhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeec-cccccccceeeEEeeeeeecCCeEEEEEEeccC
Q 003219 419 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (838)
Q Consensus 419 ----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v-~SPLVp~Re~~flRyckq~~~g~waVvDvSld~ 493 (838)
+.+|... +..++.++-|.. ...++|..+-- +.++|..|||.++||.++.++|.++|+-+|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~--------~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISE--------DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCC--------CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678755 455777776642 12456653322 235799999999999999999999999999864
Q ss_pred CcCCCCCCCccceeecCCceeEeecC--CCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003219 494 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 567 (838)
Q Consensus 494 ~~~~~~~~~~~~~~r~PSGclIq~~~--nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 567 (838)
-. .|..+.++|+...++|++|++.+ ++.|+ |||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~--~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSF--LVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceE--EEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 42 22223589999999999999886 57899 999999987643 33 45577777777778899998774
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.89 E-value=8.7e-10 Score=114.15 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++.+
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4566788899999999999999999999999999999999999999999999999999997654
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.70 E-value=3.1e-07 Score=95.39 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCC-CCCCceeeeccceeEEechhhHHHHhcCh
Q 003219 341 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMDP 419 (838)
Q Consensus 341 ~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~~~~V~~~~~~LVe~lmD~ 419 (838)
..|+++|++|++++-+ +.-.|-.-.++. +...+ .+ ...+.+---|..|+|..++.+|+|.+.|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~~v~-----~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~ 68 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KITVS-----WKPSRKYHGNLYRVEGIIPESPAKLIQFMYQP 68 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecCC---------ceEEE-----EEEcCCCCceEEEEEEEecCCHHHHHHHHhcc
Confidence 5789999999999977 567897654332 11111 11 12344456789999999999999999987
Q ss_pred hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeee-ccccccccceeeEEeeeeeecCCeEEEEEEeccCCcCCC
Q 003219 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (838)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~-v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~~~~ 498 (838)
+...+-=+ .+..++.++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-.- |
T Consensus 69 e~r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 69 EHRIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred chhhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 65443323 345566666654 22256675554 4557899999999999999999999999999864321 2
Q ss_pred CCCCccceeecCCceeEeecCCC--ceeeeEEEEEeeeeccc
Q 003219 499 GAPAFVNCRRLPSGCVVQDMPNG--YSKLQVTWVEHAEYDES 538 (838)
Q Consensus 499 ~~~~~~~~~r~PSGclIq~~~nG--~sk~~VtwVeH~e~d~~ 538 (838)
..+.++|++-.|+||+|++.+++ +|+ ++|+-++++.-+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~--l~~~~~~DlkG~ 178 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSK--LVMFVQPELRGN 178 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceE--EEEEEEeCCCCC
Confidence 22358999999999999999874 899 999999776643
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.69 E-value=1e-08 Score=114.41 Aligned_cols=65 Identities=31% Similarity=0.504 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
..++.+|.|+.|+..|++.||+.|+.++||+...|++||+++++++.+|++||+|||+|++|+..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 34555677889999999999999999999999999999999999999999999999999997653
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.61 E-value=1.6e-06 Score=90.09 Aligned_cols=193 Identities=13% Similarity=0.208 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD~ 419 (838)
..+++++|+++++.+-+ .+.-|-...+.. +.+.|.+... .+..=.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhc
Confidence 36789999999999974 677897654321 2233322110 111112678889999999999999976
Q ss_pred -----hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecccc---ccccceeeEEeeeeeecCCeEEEEEEec
Q 003219 420 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (838)
Q Consensus 420 -----~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SP---LVp~Re~~flRyckq~~~g~waVvDvSl 491 (838)
.+|-..+ ..++.++-|. +...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|.
T Consensus 69 ~~~~r~~W~~~~----~~~~vle~id--------~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 69 AGGLRVKWDQNV----KDFEVVEAIS--------DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred cchhhhhhhhcc----ccEEEEEEec--------CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 5888772 2345555444 12233443 45655 7999999999999999999988777676
Q ss_pred cCCcCCCCCCCccceeecCCceeEeecCC--CceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003219 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 567 (838)
Q Consensus 492 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 567 (838)
..-. -|..+.++|++..|+|++|...++ +.|+ |+|+-|++.-- .+| +.++++.++=...-.+..|+++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~--v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQ--LVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceE--EEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 5421 122235899999999999999964 5789 99998887642 354 34555444334444566665554
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.47 E-value=5.9e-06 Score=86.00 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=98.9
Q ss_pred CCceeeeccceeEEechhhHH-HHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceee
Q 003219 393 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 471 (838)
Q Consensus 393 g~~~EASR~~~~V~~~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~ 471 (838)
+...-+-|....|.-.+..++ .+|.++.+|-..|-. +++++.|. +...+.|--+.-|-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~----~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQ----WKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcce----eEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 334456676666766666664 467778889887443 77777665 2246777777777776 999999
Q ss_pred EEeeeee-ecCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccc
Q 003219 472 FLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDES 538 (838)
Q Consensus 472 flRyckq-~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~ 538 (838)
.+|+-++ +++|.++|+..|++.....+ ..++|+..+=+|++|+++++|.|+ ||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~tr--vt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSR--LTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEE--EEEEEEecCCCC
Confidence 9999765 46999999999999764322 147999999999999999999999 999999986533
No 38
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.46 E-value=1e-07 Score=101.08 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
..|||+|+.+...+...||.+|...|.|+.+.+..+|++|.|....|+|||+|.|+|.||.+
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 45677889999999999999999999999999999999999999999999999999999744
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.41 E-value=6.3e-06 Score=84.90 Aligned_cols=168 Identities=13% Similarity=0.241 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh-hhh
Q 003219 345 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 422 (838)
Q Consensus 345 ~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD~-~~W 422 (838)
+.+.++|++-+...+.-|.-..+ .| .+| |.|.. +.++...+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999976532 22 122 22222 22445566788888988899999877764 456
Q ss_pred hhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeee-ecCCeEEEEEEeccCCcCCCCCC
Q 003219 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 501 (838)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq-~~~g~waVvDvSld~~~~~~~~~ 501 (838)
-.. +.+++.++.|+ ....+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~----~~~~~vie~id--------~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDD----LLQWKVVETLD--------EDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chh----hheEEEEEEec--------CCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 665 23366666654 123578888888877 59999999998875 67889999999986321111 1
Q ss_pred CccceeecCCceeEeecCCCceeeeEEEEEeeeecccccccc
Q 003219 502 AFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQL 543 (838)
Q Consensus 502 ~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~l 543 (838)
.++|++.+++|++|++..+|.|+ |||+-|++.-- .+|.-
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~--vty~~~~Dp~G-~iP~w 174 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSR--VTHICRVDLRG-RSPEW 174 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeE--EEEEEEECCCC-CCCce
Confidence 48999999999999999999999 99999998643 34443
No 40
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.38 E-value=5.1e-06 Score=86.36 Aligned_cols=192 Identities=13% Similarity=0.206 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhc
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 417 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lm 417 (838)
-..++.+|++|++++.+ .+.-|-... +.| ..| |.+.||.. | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l~ 69 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSELV 69 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHHH
Confidence 56889999999999986 666897652 223 111 23333322 1 355666799999999995554
Q ss_pred -Ch---hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecccc--ccccceeeEEeeeeeecCCeEEEEEEec
Q 003219 418 -DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (838)
Q Consensus 418 -D~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SP--LVp~Re~~flRyckq~~~g~waVvDvSl 491 (838)
|. .+|... |.-.++|..-. ....++|. ..++.| +|..|||..+|+.++.+++. +++..|.
T Consensus 70 ~d~e~~~~W~~~-------~~~~~vl~~id-----~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 70 DRMEQMGEWNPN-------VKEVKILQRIG-----KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred hchhhhceeccc-------chHHHHHhhcC-----CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 566665 45555554432 12246664 667766 79999999999999986654 4556665
Q ss_pred cCCcCCCCCCCccceeecCCceeEeecCC--CceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 492 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
+.-. -|..+.++|.+..+.|++|+++++ |.|+ |+|+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 136 ~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~--v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTK--LTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceE--EEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 4321 122225899999999999999988 8999 999999987655 443 45666666666678888877765
No 41
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.38 E-value=3.9e-06 Score=99.59 Aligned_cols=129 Identities=17% Similarity=0.286 Sum_probs=104.1
Q ss_pred eeeccceeEEechhhHHHHhcChh----hhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeee--cccccccccee
Q 003219 397 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 470 (838)
Q Consensus 397 EASR~~~~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~--v~SPLVp~Re~ 470 (838)
-+=|+.|+|...+.+|.|.+|+.+ +|=.. +..++-++-|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~----~~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCS----FQYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhc----ccceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 577889999999999999999777 66555 45578877763 56678887774 45567777999
Q ss_pred eEEeeeeeecCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecC--C--CceeeeEEEEEeeeeccccc
Q 003219 471 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKLQVTWVEHAEYDESQV 540 (838)
Q Consensus 471 ~flRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~--n--G~sk~~VtwVeH~e~d~~~v 540 (838)
+++||-+..+||+++|+=+|+..-.- |..+.++|.+..|.||+|.+++ + -.|. |+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~c-PP~kG~VRg~~~pGGwiIsPL~~~~g~~r~l--v~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENC-GPQPGFVRAHLESGGFNISPLKPRNGRPRTQ--VQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCC-CCCCCeEEEEEeCCEEEEEECCCCCCCCceE--EEEEEEEccCcccc
Confidence 99999999999999999999875432 2223589999999999999964 4 3688 99999999988874
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.28 E-value=2.4e-05 Score=81.50 Aligned_cols=196 Identities=10% Similarity=0.165 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec-cC-CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-HH
Q 003219 339 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 415 (838)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~-~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LV-e~ 415 (838)
-....+.+||+++.++... +.-|.-. .+ .| .+.|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3567899999999999765 4579853 22 34 122322111011233 55667777888995 68
Q ss_pred hcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecccc--ccccceeeEEeeeeeecCCeEEEEEEeccC
Q 003219 416 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (838)
Q Consensus 416 lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SP--LVp~Re~~flRyckq~~~g~waVvDvSld~ 493 (838)
|.|.+...+=.+.+ ..++.++-|+. .--+.| ++-.|.+ .|..|||..+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88887555544443 22444444331 124557 6666664 7999999999999998888 5777788764
Q ss_pred CcCCCCCCCccceeecCCceeEeec--CCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 494 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 494 ~~~~~~~~~~~~~~r~PSGclIq~~--~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
-. -|..+.++|.+..++|++|++. .+|.|+ |||+-|++.--+ +|. .|++..++=..-..+..|+++.+
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~--vt~~~~~Dp~G~-lP~---~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCT--FIWILNTDLKGR-LPR---YLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceE--EEEEEecCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 1222358999999999999985 567899 999999987653 332 45665555444555666655543
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.25 E-value=2.3e-05 Score=81.16 Aligned_cols=194 Identities=14% Similarity=0.155 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCC-CCCCceeeeccceeEEechhhHHHHhcC
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~~~~V~~~~~~LVe~lmD 418 (838)
...+|.++-+++++--+.++-.|-.-.+.+. -.+..+ ..-|.+---|.-|+|.-.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 3567888888899987779999976433220 111122 2244455567778888899999999999
Q ss_pred ---hhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCCc
Q 003219 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR 495 (838)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~~ 495 (838)
+.+|=+. |..++.++-|.. +++-.-|.=.-.+-++|-+|||.-|||+++.++|. ..|=||++.-.
T Consensus 69 ~~~r~~Wd~~----v~~~~Iie~Id~-------dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 69 GPYRLDWDSL----MTSMDIIEEFEE-------NCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred ccchhcccch----hhheeHhhhhcC-------CcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 5599877 455666655542 33322255566777899999999999999999998 77788887543
Q ss_pred CCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHH
Q 003219 496 ETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ 566 (838)
Q Consensus 496 ~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ 566 (838)
.. +.++|.+..|.||++++.+||-+|...||+-++++.-+ |=+-++++.++=..=-....|+++
T Consensus 137 ~p---pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 AR---PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CC---CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 21 25899999999999999999954433899999777644 334456555444333335555444
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.25 E-value=5.9e-07 Score=95.18 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
|...-...|..+|..++||+..++.+||+.+||+..||-.||.|||+|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 566678899999999999999999999999999999999999999999993
No 45
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.07 E-value=6.4e-05 Score=78.18 Aligned_cols=183 Identities=15% Similarity=0.243 Sum_probs=124.1
Q ss_pred HHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChh---hhhhhcc
Q 003219 352 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 427 (838)
Q Consensus 352 ~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~-~~~~~LVe~lmD~~---~W~~~Fp 427 (838)
+..-+.+.+-|-...+... .+.|.+.. .+...-.=|..+++. ..+..|.++|+|.+ +|...
T Consensus 17 ~~~~~~~~~~W~l~~~~~~---------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-- 81 (207)
T cd08910 17 LQQPALDGAAWELLVESSG---------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY-- 81 (207)
T ss_pred hcCCCCCCCCeEEEEecCC---------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH--
Confidence 3444455677987654321 12232211 123333677778887 79999999999965 56655
Q ss_pred ccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeee-ecCC--eEEEEEEeccCCcCCCCCCCcc
Q 003219 428 CMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEG--VWAVVDVSIDTIRETSGAPAFV 504 (838)
Q Consensus 428 ~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq-~~~g--~waVvDvSld~~~~~~~~~~~~ 504 (838)
++. .++.++ .+ ..++|-.+..|-| |..||+.++|-... ..+| .|+|+..|.+.- .-|....++
T Consensus 82 -~~~---~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~V 147 (207)
T cd08910 82 -VKE---LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVI 147 (207)
T ss_pred -HHh---heeecC-------CC-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCE
Confidence 221 223222 12 3678999999999 99999999964443 3344 689888887632 112223589
Q ss_pred ceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003219 505 NCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 569 (838)
Q Consensus 505 ~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 569 (838)
|....-+|++|++..++.|+ |+++-|.+-- ..+|. -+++.....+.-.|+..|+..|..
T Consensus 148 Rv~~~~~~~~i~p~~~~~t~--i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 148 RVKQYKQSLAIESDGKKGSK--VFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEEEEeCCCCceE--EEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 99999999999999889999 9999998752 23543 257777788889999999888863
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.95 E-value=0.00023 Score=73.98 Aligned_cols=200 Identities=16% Similarity=0.077 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD~ 419 (838)
+++=+...|+|+.+..+. +.-|....+.. +.++|-+.. ++-..-+-|.-|++..+...+.++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 355566888999988776 55798764431 222322211 1222467788889999999999999999
Q ss_pred hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEE-eeeeee-cCCeEEEEEEeccCCcC-
Q 003219 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 496 (838)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~fl-Ryckq~-~~g~waVvDvSld~~~~- 496 (838)
+...+-+|.. ..++.++.++- .-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8777777763 33455544432 13677888888888 888999975 567777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 497 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 497 -------~~~~~-~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
-|..+ .++|....-+|++|+++++|.|+ |+++-|++-.-+-||.= |++...--.+...+..|++.|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~--v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCY--LRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeE--EEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12233 58999999999999999999999 99999966332226653 3444444446667777777765
No 47
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.89 E-value=0.00029 Score=71.52 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=106.4
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeee
Q 003219 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (838)
Q Consensus 398 ASR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyck 477 (838)
.-|..++|..++.++.+++.|.+.|.+-=|. +...+||..... + -.++|..+..+=| |..|||.++|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 4588888999999999999999888766555 344555553321 1 2556666666555 7899999876543
Q ss_pred ee-cCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHH
Q 003219 478 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGA 556 (838)
Q Consensus 478 q~-~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA 556 (838)
.. ++|..+|.=.|.+.. -|....++|++.+-+|+.|++.++|.|+ |+++-|++..-+...-+.+.+. .=+.
T Consensus 112 ~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~~~t~--vt~~~~~dp~g~iP~~lv~~~~----~~~~ 183 (195)
T cd08876 112 QDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGNGKTR--VTYQAYADPGGSIPGWLANAFA----KDAP 183 (195)
T ss_pred EcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCCCeEE--EEEEEEeCCCCCCCHHHHHHHH----HHHH
Confidence 33 367777766666542 1212247899999999999999999999 9999999887543334444443 3356
Q ss_pred HHHHHHHHHHH
Q 003219 557 QRWVATLQRQC 567 (838)
Q Consensus 557 ~rWlatLqR~c 567 (838)
.+++++|+++|
T Consensus 184 ~~~l~~l~~~~ 194 (195)
T cd08876 184 YNTLENLRKQL 194 (195)
T ss_pred HHHHHHHHHhh
Confidence 68888887765
No 48
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.81 E-value=1.1e-05 Score=85.18 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
||+|+.|+..-.+.|..+| ..+|||+...+++||++++++-.||-.||.|+|-+.||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 5566789999999999999 4689999999999999999999999999999999999744
No 49
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.75 E-value=0.00031 Score=73.32 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=93.0
Q ss_pred CCCCCceeeeccceeEEechhhHHHHhcChh---hhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecccccc-
Q 003219 390 KPNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLV- 465 (838)
Q Consensus 390 ~~~g~~~EASR~~~~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLV- 465 (838)
...+|.. -++|...+.+|++.|.|.. +|-.+ +.+.+||..-. ....++|..+..|=|+.
T Consensus 43 ~~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~ 105 (205)
T cd08874 43 TYHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLK 105 (205)
T ss_pred CcceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCC
Confidence 3346664 3477889999999998876 56665 56667776432 33467777777666553
Q ss_pred ccceeeEEeeeeeecCCeEEEEEEeccC-CcCCCCCCCccceeecCCceeEeec---CCCceeeeEEEEEeeeecccccc
Q 003219 466 PVREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKLQVTWVEHAEYDESQVH 541 (838)
Q Consensus 466 p~Re~~flRyckq~~~g~waVvDvSld~-~~~~~~~~~~~~~~r~PSGclIq~~---~nG~sk~~VtwVeH~e~d~~~vh 541 (838)
+.|||..+|-....+++.. |.=.|++. ..+.. .+.++|.+.+++|++|+++ ++|.|+ ||.+-|+|---..||
T Consensus 106 ~~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~--vty~~q~DPggg~iP 181 (205)
T cd08874 106 QPRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTR--VIYIAQVALCGPDVP 181 (205)
T ss_pred CCCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEE--EEEEEEECCCCCCCC
Confidence 9999999995555555544 66677765 22211 1148999999999999999 999999 999999987533444
No 50
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.71 E-value=0.00053 Score=71.59 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhcCCCCceeecc-CCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC-hhh
Q 003219 344 ALAAMDELVKMAQTDEPLWIRSF-EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PNR 421 (838)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~-~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD-~~~ 421 (838)
-+..+++|++.|..--=-|+.-. ..+ .|+- |. .+..|...-.=|....+.-.+.+++..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~--------k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YK--------KVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Ee--------ccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 34677777777764444555421 111 1110 11 123344445667777777778888855554 567
Q ss_pred hhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeee-eecCCeEEEEEEeccCCcCCCCC
Q 003219 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (838)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyck-q~~~g~waVvDvSld~~~~~~~~ 500 (838)
|-.. +..++.++-|+. .-.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .|
T Consensus 78 Wd~~----~~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P-- 141 (204)
T cd08908 78 WDVD----LLDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP-- 141 (204)
T ss_pred HHHH----hhheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--
Confidence 8877 334666666652 12578888889988 7999999997665 578999999999987542 12
Q ss_pred CCccceeecCCceeEeecCCCceeeeEEEEEeeeec
Q 003219 501 PAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYD 536 (838)
Q Consensus 501 ~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d 536 (838)
...+|.+.+-+|++|+++.+|.|+ ||.+-|++--
T Consensus 142 ~~~VR~~~~~~~w~i~P~g~g~t~--vtyi~~~DPg 175 (204)
T cd08908 142 VAGVRVNVLLSRYLIEPCGSGKSK--LTYMCRIDLR 175 (204)
T ss_pred cCceEEEEEeeEEEEEECCCCcEE--EEEEEEeCCC
Confidence 236899999999999999999999 9999998753
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.56 E-value=0.0025 Score=66.22 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=116.0
Q ss_pred eeeccceeE-EechhhHHHHhcChh---hhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeE
Q 003219 397 EASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (838)
Q Consensus 397 EASR~~~~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~f 472 (838)
-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|..... .| ..++|-.+..|-|+ -.||+.+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~~---~~-~~i~y~~~~~P~P~-s~RD~V~ 117 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDEK---SG-TEIVRWVKKFPFPL-SDREYVI 117 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecCC---CC-cEEEEEEEECCCcC-CCceEEE
Confidence 456777777 569999999999965 56665 344445543110 02 47899999999988 9999999
Q ss_pred EeeeeeecCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeec--CCCceeeeEEEEEeeeeccccccccchhhhcc
Q 003219 473 LRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKLQVTWVEHAEYDESQVHQLYKPLIIS 550 (838)
Q Consensus 473 lRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~--~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~S 550 (838)
.|-..+..+|..+|+=-|++.-. .|.. .++|.+..=||++|++. .+|.++ |+++-|.+- .-.+|. -|++.
T Consensus 118 ~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~--~~~~~~~dp-~G~IP~---wlvN~ 189 (209)
T cd08870 118 ARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSA--CEVTYFHNP-DGGIPR---ELAKL 189 (209)
T ss_pred EEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceE--EEEEEEECC-CCCCCH---HHHHH
Confidence 99777777999988888877521 1211 47999999999999999 788999 888888863 224554 46888
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 003219 551 GMGFGAQRWVATLQRQCEC 569 (838)
Q Consensus 551 g~afGA~rWlatLqR~cer 569 (838)
....|+-.||..|.+.|..
T Consensus 190 ~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 190 AVKRGMPGFLKKLENALRK 208 (209)
T ss_pred HHHhhhHHHHHHHHHHHhc
Confidence 8999999999999988853
No 52
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.56 E-value=0.00053 Score=71.37 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChhhh
Q 003219 344 ALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNRW 422 (838)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~-~~~~~LVe~lmD~~~W 422 (838)
-+..+++|++-+....=-|+...+....|+. .|.-++ |...--=|.+.-|. ..+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 3478889999998777789874322102221 111011 11111112222222 2445567999999999
Q ss_pred hhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeee-eecCCeEEEEEEeccCCcCCCCCC
Q 003219 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAP 501 (838)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyck-q~~~g~waVvDvSld~~~~~~~~~ 501 (838)
=+. +-+.++|+.|..-. ++-|=-+.-| +.+|.|||.+||.-+ .+..|.-+|+.+|++....-+ ..
T Consensus 79 D~~----m~e~~~Ie~Ld~n~--------dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~~ 144 (205)
T cd08907 79 DED----LLHSQVIEALENNT--------EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-EA 144 (205)
T ss_pred hHH----HHhhhhheeecCCC--------EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-CC
Confidence 988 34588988885211 2233223233 568999999999864 467789999999998654332 22
Q ss_pred CccceeecCCceeEeecCCCceeeeEEEEEeeeeccc
Q 003219 502 AFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDES 538 (838)
Q Consensus 502 ~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~ 538 (838)
-+|+--+=|||||++++.|.|+ ||-|-|++..-+
T Consensus 145 -gVRa~~l~sgYlIep~g~g~s~--ltyi~rvD~rG~ 178 (205)
T cd08907 145 -GVRAVLLTSQYLIEPCGMGRSR--LTHICRADLRGR 178 (205)
T ss_pred -CeEEEEEeccEEEEECCCCCeE--EEEEEEeCCCCC
Confidence 3899999999999999999999 999999987544
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.55 E-value=2.2e-05 Score=61.43 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHhhccccceeeecccchhhH
Q 003219 155 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (838)
Q Consensus 155 ~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (838)
.+|||+..++.+||+++||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999864
No 54
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.44 E-value=0.00011 Score=76.35 Aligned_cols=65 Identities=29% Similarity=0.604 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
...+.++.|+.++..|+..++..|...++|+...+.+|+..+|++++.+++||||+|.+.|+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34556778888999999999999999999999999999999999999999999999999997654
No 55
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.41 E-value=0.0056 Score=65.22 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhcC--CCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChhh
Q 003219 345 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (838)
Q Consensus 345 ~~Am~El~~la~~--~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~-~~~~~LVe~lmD~~~ 421 (838)
.+-.+|.+++|+. ++.-|--..+.+. .+.|.+.. ...|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3566789999865 5557976543321 23333221 11144445678888888 889999999999874
Q ss_pred hhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecC-------CeEEEEEEeccCC
Q 003219 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTI 494 (838)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~-------g~waVvDvSld~~ 494 (838)
..+=... +...+||..-. ....+.|..+-.|=| +..|||.|+|+-++.++ +.|+|+..|++.-
T Consensus 78 r~~Wd~~----~~~~~vie~l~-----~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~ 147 (235)
T cd08872 78 RMDWETT----LENFHVVETLS-----QDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHD 147 (235)
T ss_pred HHHHHhh----hheeEEEEecC-----CCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCc
Confidence 4433222 34444444332 222567888888999 69999999999999876 7899999997743
Q ss_pred cCCCCCCCccceee---cCCceeEee------c--CCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003219 495 RETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 563 (838)
Q Consensus 495 ~~~~~~~~~~~~~r---~PSGclIq~------~--~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatL 563 (838)
. -|..+.++|++. +=.|.+|.+ + .||.|+ ||++-|++---+--.- +++.....++-++|..|
T Consensus 148 ~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~--ity~~~~dPgG~iP~w----vvn~~~k~~~P~~l~~~ 220 (235)
T cd08872 148 S-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCK--ITYVANVNPGGWAPAS----VLRAVYKREYPKFLKRF 220 (235)
T ss_pred c-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEE--EEEEEEeCCCCCccHH----HHHHHHHhhchHHHHHH
Confidence 2 122224677765 223333333 1 588999 9999999755443333 35555566677777777
Q ss_pred HHHH
Q 003219 564 QRQC 567 (838)
Q Consensus 564 qR~c 567 (838)
--|+
T Consensus 221 ~~~~ 224 (235)
T cd08872 221 TSYV 224 (235)
T ss_pred HHHH
Confidence 5544
No 56
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.35 E-value=0.00013 Score=84.06 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
+..+.||.|..||..|...|..+|+++++|+....+.|+.+|+|....|..||-|-|.|.+
T Consensus 416 ~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 416 KMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 3445678899999999999999999999999999999999999999999999999887753
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.34 E-value=0.0045 Score=64.42 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=111.1
Q ss_pred eeccceeE-EechhhHHHHhcChh---hhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEE
Q 003219 398 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (838)
Q Consensus 398 ASR~~~~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~fl 473 (838)
.=|..+++ ...+..+++.|+|.+ +|-.. +...++|.-.. +-...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDP----ETGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccC----CCCCEEEEEEEECCCCC-CCccEEEE
Confidence 45665544 788999999999986 56666 44455665421 11237899999999996 99999999
Q ss_pred eeeeeec-CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecC---CCceeeeEEEEEeeeeccc-cccccchhhh
Q 003219 474 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKLQVTWVEHAEYDES-QVHQLYKPLI 548 (838)
Q Consensus 474 Ryckq~~-~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~---nG~sk~~VtwVeH~e~d~~-~vh~lyrpl~ 548 (838)
|-..+.+ +|.++|+-.|++.-. .|....++|.....+|++|++.. +++|+ |+++-|. |+. .+|.- |+
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~--~~~~~~~--dPgG~IP~~---lv 185 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFE--FVLTYFD--NPGVNIPSY---IT 185 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeE--EEEEEEe--CCCCccCHH---HH
Confidence 8876665 567888888887421 12122589999999999999984 67899 9988885 655 36653 46
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 003219 549 ISGMGFGAQRWVATLQRQCEC 569 (838)
Q Consensus 549 ~Sg~afGA~rWlatLqR~cer 569 (838)
+.-...++-.||..|++-|..
T Consensus 186 N~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 186 SWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHHHhhccHHHHHHHHHHhc
Confidence 666777788999999888753
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.94 E-value=0.046 Score=57.23 Aligned_cols=175 Identities=19% Similarity=0.285 Sum_probs=103.1
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 691 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 691 (838)
..++|... .. .++|+|.+|+..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~-~~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLK-YN--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEE-Ec--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 34589976 33 5679999988632 2344455666666 9999999999999999999975432 2344444
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCccEEcCCCC
Q 003219 692 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGP 767 (838)
Q Consensus 692 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~tD~sgs~vVyA-PvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg~ 767 (838)
+.++.|.-...+..- -..++.++++..+.+. ++++|++ .|+-+.+ ...+.+| ..+.+||.|-|.+
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~- 158 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG- 158 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC-
Confidence 345555555444222 3456777777755555 7766543 3432221 0112222 3567777777742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhHHHHHHHHHHhc
Q 003219 768 DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 835 (838)
.++|.+|.-+|+=.... +..--|.. +....-.++++++.|+.
T Consensus 159 ----------------------~~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ----------------------PKGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------------------CCCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 13588887776654432 22222222 23334467888887764
No 59
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.93 E-value=0.0093 Score=63.69 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCceeeeccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeE
Q 003219 393 GFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (838)
Q Consensus 393 g~~~EASR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~f 472 (838)
.|++|+. |...+.+|++.|.|.+...+=.+ .+...++|..-. ....++|..+..|. -+..|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEE
Confidence 3555554 88899999999999875444333 255556665321 12356776655555 488999999
Q ss_pred EeeeeeecCC--eEEEEEEecc-CCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeee
Q 003219 473 LRFCKQHAEG--VWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAE 534 (838)
Q Consensus 473 lRyckq~~~g--~waVvDvSld-~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e 534 (838)
+|+-++..++ ..+|.=.|+. ... |..+.++|.+.+=.|++|++..+|.|+ ||.+-|++
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~--Pp~kgyVR~~~~~ggW~I~p~~~~~t~--VtY~~~~d 203 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRV--PQTPGYSRTEVACAGFVIRQDCGTCTE--VSYYNETN 203 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccC--CCCCCeEEEEEEeeeEEEEECCCCcEE--EEEEEEcC
Confidence 9999984433 3777666655 221 112258999999999999999999999 99999986
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.56 E-value=0.12 Score=53.45 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=104.0
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 692 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia 692 (838)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 46899965 3 35799999999733 222 44557788889999999999988 6899996432 12333333
Q ss_pred cCCCCCceEEEEEeccCCC-CCCceEEEEecccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--ccccCCccEEcCCC
Q 003219 693 KGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYA-PVDIP-AMHVVMNGGDSAY--VALLPSGFAIVPDG 766 (838)
Q Consensus 693 ~g~~~gn~vsllr~~~~~~-~~~~~liLQes~tD-~sgs~vVyA-PvD~~-~m~~vm~G~D~~~--v~LLPSGF~I~Pdg 766 (838)
+..+.|--...+..-+ ..+++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECC
Confidence 2334443333333222 33455555443333 455665433 23221 11 0123 35788999998853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhHHHHHHHHHHhcc
Q 003219 767 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQC 836 (838)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~~ 836 (838)
. ++|.+|--.|+=.. ..+..=-+-..+++++..|++|++.+.|
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~----G~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLR----GRSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred C-----------------------CCeEEEEEEEECCC----CCCCceeecchHhHHHHHHHHHHhhccC
Confidence 1 35777766665433 2232223445678999999999998876
No 61
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.52 E-value=0.19 Score=52.78 Aligned_cols=174 Identities=19% Similarity=0.281 Sum_probs=108.1
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhh-hcCCCCcceee
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDI-LSNGGPMQEMA 689 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~-ls~G~~vqe~~ 689 (838)
....+|... ...++|.|.++|..+ |.|.-++.| |+=++ +|.+.|+|.|+| |..||. |.... .|.
T Consensus 24 ek~kgW~~~---~~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSA---PGPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceee---cCCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 455689866 236789999999755 566555544 45568 999999999999 999996 33322 222
Q ss_pred ecccCCCCCceEEEEEeccCCCCCCceEEEEecc-cC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEcCCC
Q 003219 690 HIAKGQDHGNCVSLLRASAINANQSSMLILQETC-TD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 766 (838)
Q Consensus 690 ~ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~-tD-~sgs~vVyAP-vD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg 766 (838)
.| +..|.|-=.-.+...+-.+--|++|-++ +| ..|++++.+- |+=+... ..|| --...|=+||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 33 4445555454544445556667777777 34 5677666542 2222211 1222 2233455777777743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hhhhHHHHHHHHHHhc
Q 003219 767 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 835 (838)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tv~~Ik~Al~ 835 (838)
. |+|-||=-.|+=.... .++=+..| ..|++.-+.||+..+.
T Consensus 162 ~-----------------------g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 M-----------------------GRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred C-----------------------CCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2 5788887777766655 45556555 5667778889988764
No 62
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.35 E-value=0.17 Score=53.05 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=108.6
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeeccc
Q 003219 614 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAK 693 (838)
Q Consensus 614 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~ 693 (838)
.++|... . ..+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~-k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I-- 87 (204)
T cd08904 21 TSGWKVV-K--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI-- 87 (204)
T ss_pred ccCCeEE-e--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe--
Confidence 4899977 3 348899999988655542 3456677899999999999999999999974332 3444444
Q ss_pred CCCCCceEEEEEeccC--C-CCCCceEEEEeccc-CCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEEcCCC
Q 003219 694 GQDHGNCVSLLRASAI--N-ANQSSMLILQETCT-DAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 766 (838)
Q Consensus 694 g~~~gn~vsllr~~~~--~-~~~~~~liLQes~t-D~sgs~vV-yAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg 766 (838)
+...+|...+..+. + -+.++.+.+|-..- +. +.+++ +.-|+-+.+- .-+.+| -..|+||.|.|-.
T Consensus 88 --d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 --DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred --CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECC
Confidence 66667777665421 1 23467777765322 33 33333 4445544431 123444 3789999999942
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhHHHHHHHHHHh
Q 003219 767 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 834 (838)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al 834 (838)
.. .++|.||.-+|+=.. -.|..--|.. -.+++. .+...|.||
T Consensus 160 ~~---------------------p~~t~l~~~~~~Dlk----G~lP~~vv~~~~~~~~~~-f~~~~~~~~ 203 (204)
T cd08904 160 EN---------------------PAYSKLVMFVQPELR----GNLSRSVIEKTMPTNLVN-LILDAKDGI 203 (204)
T ss_pred CC---------------------CCceEEEEEEEeCCC----CCCCHHHHHHHhHHHHHH-HHHHHHHhc
Confidence 21 146999999885443 3344444443 333443 667777776
No 63
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.19 E-value=0.067 Score=57.39 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=83.2
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecccc--ccccceeeEEeeeeee
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQH 479 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SP--LVp~Re~~flRyckq~ 479 (838)
-++|...+.+|.+.|.|.+...+=.+. +...+||..... + . . +|-.. -+.+ -|..|||..++...+.
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~---~-~-~-vY~v~-~~p~~~pvs~RDfV~~~s~~~~ 154 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDE---D-D-A-IYHVT-SPSLSGHGKPQDFVILASRRKP 154 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCC---C-c-E-EEEEe-cCCCCCCCCCCeEEEEEEEEec
Confidence 368899999999999998755544443 444555543322 1 1 1 23222 1222 5889999999888665
Q ss_pred c-CC-eEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeecccccccc
Q 003219 480 A-EG-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQL 543 (838)
Q Consensus 480 ~-~g-~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~l 543 (838)
+ +| .++|+=.|+..-. -|..+.++|.+.+..|++|++..+|.|+ ||++-|++ +..+|..
T Consensus 155 ~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~--vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 155 CDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTK--VSYYNQAT--PGVLPYI 215 (240)
T ss_pred cCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEE--EEEEEEeC--CccccHH
Confidence 4 34 4555555543221 2222358999999999999999999999 99999987 2355543
No 64
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.12 E-value=0.054 Score=57.97 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=89.2
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccc-cccccceeeEEeee
Q 003219 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 476 (838)
Q Consensus 398 ASR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~S-PLVp~Re~~flRyc 476 (838)
+-|.-..|...+.+|++.|.|.+...+=.+- +...+||..-.... . +|...-.|- |+ ..|||.++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEEEEE
Confidence 3344447788999999999998755544333 44455554322211 1 455543443 44 89999998777
Q ss_pred eeec-CCe-EEEEEEeccC-CcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeecccccccc
Q 003219 477 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQL 543 (838)
Q Consensus 477 kq~~-~g~-waVvDvSld~-~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~l 543 (838)
.+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++.++|.|+ ||.+-|++ +..+|..
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~pl~~~~~~--VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHAIDSNSCT--VSYFNQIS--ASILPYF 211 (236)
T ss_pred EecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEEcCCCcEE--EEEEEEcC--Cccchhe
Confidence 6666 885 8888888765 222 12258999999999999999999999 99999995 4556544
No 65
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.09 E-value=0.073 Score=55.77 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 691 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 691 (838)
-...+|..- . ..++|+|.++.. +|...|. ++ .+ -+++||+.|+++|+|...|.+||...... +|
T Consensus 19 ~~~~gW~l~-~--~~~gI~Vy~k~~---~~~~~~~-~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~------~v 82 (205)
T cd08874 19 QATAGWSYQ-C--LEKDVVIYYKVF---NGTYHGF-LG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKTA------RI 82 (205)
T ss_pred hccCCcEEE-e--cCCCEEEEEecC---CCCcceE-EE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhhe------ee
Confidence 456799533 2 368999999874 2344443 43 33 34999999999999999999999854322 22
Q ss_pred ccCCCCCceEEEEEeccCC---C--CCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCC-C--CccccCCccEE
Q 003219 692 AKGQDHGNCVSLLRASAIN---A--NQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDS-A--YVALLPSGFAI 762 (838)
Q Consensus 692 a~g~~~gn~vsllr~~~~~---~--~~~~~liLQes~tD~sgs~vV-yAPvD~~~m~~vm~G~D~-~--~v~LLPSGF~I 762 (838)
.+-.+.. ..|++..... . ..+++.+|+- +.+.-+.++| ---|+-+.+ ...+ . -+..+++||.|
T Consensus 83 l~~~~~d--~~i~y~~~~~Pwp~~~~~RDfV~l~~-~~~~~~~~vi~~~SV~~~~~-----P~~~~~~VR~~~~~~gw~i 154 (205)
T cd08874 83 HKTFTED--ICLVYLVHETPLCLLKQPRDFCCLQV-EAKEGELSVVACQSVYDKSM-----PEPGRSLVRGEILPSAWIL 154 (205)
T ss_pred eeecCCC--eEEEEEEecCCCCCCCCCCeEEEEEE-EEECCCcEEEEEEecccccC-----CCCCCCeEEeeeEeeeEEE
Confidence 2222333 3455543111 1 4567777774 4443333333 211222111 0001 1 24578888888
Q ss_pred cCC
Q 003219 763 VPD 765 (838)
Q Consensus 763 ~Pd 765 (838)
.|.
T Consensus 155 ~P~ 157 (205)
T cd08874 155 EPV 157 (205)
T ss_pred EEC
Confidence 884
No 66
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.05 E-value=0.0041 Score=78.06 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
+|++|++++..|+..+..+|....||...+.+.|.+.++++++.|++||||-|.|.||...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5677899999999999999999999999999999999999999999999999999997654
No 67
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.25 E-value=1.3 Score=44.86 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=46.1
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 679 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 679 (838)
|.+-+|... . ..++|+|.+++..+ +.+..-.++..++.+|+.||+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 445559977 3 35799999998632 12445577778999999999999999999999963
No 68
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.07 E-value=1.3 Score=43.78 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=90.9
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 003219 615 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 694 (838)
Q Consensus 615 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g 694 (838)
.+|..+ .. .++|+|..++..+. .+...++..-++.|+..|+++|.|...|.+||...... ..+..+.
T Consensus 15 ~~W~~~-~~--~~~v~vy~~~~~~~------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~-- 81 (193)
T cd00177 15 EGWKLV-KE--KDGVKIYTKPYEDS------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID-- 81 (193)
T ss_pred CCeEEE-EE--CCcEEEEEecCCCC------CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC--
Confidence 589988 32 35899988876431 13455667778999999999999999999999633222 2333332
Q ss_pred CCCCceEEEEEeccCC-CCCCceEEEEecccCCCC-cEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEcCCCCCCC
Q 003219 695 QDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAG-SLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGPDSR 770 (838)
Q Consensus 695 ~~~gn~vsllr~~~~~-~~~~~~liLQes~tD~sg-s~vVyAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg~~~~ 770 (838)
.+..|.-......- ...++++++..+..+..+ -+++...||.+.. ..-+.+| .++++||.|-|.+
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~---- 150 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD---- 150 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC----
Confidence 22444444444322 345678888775555533 5666777776521 1112333 3668888888851
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003219 771 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 804 (838)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 804 (838)
.++|.+|.-+|+=..
T Consensus 151 -------------------~~~~~vt~~~~~D~~ 165 (193)
T cd00177 151 -------------------PGKTKVTYVLQVDPK 165 (193)
T ss_pred -------------------CCCEEEEEEEeeCCC
Confidence 146888887777544
No 69
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.87 E-value=1.5 Score=45.65 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=80.9
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 003219 601 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 680 (838)
Q Consensus 601 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 680 (838)
++..|...+.. .++|... . ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44556666655 6789977 3 35799999999733 348899999999999999999999999999999753
Q ss_pred CCCCcceeeecccCCCCCceEEEEEeccCC-CCCCceEEEEeccc--CCCCcEEEEe
Q 003219 681 NGGPMQEMAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGSLVVYA 734 (838)
Q Consensus 681 ~G~~vqe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--D~sgs~vVyA 734 (838)
. ..+.+..+ +..+.|..+++...= -+.+++++....|. |..|+++|+.
T Consensus 79 ~--~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 I--RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred e--eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 2 12333333 445678888766321 23456666544443 3677777655
No 70
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.83 E-value=1.5 Score=45.56 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=75.4
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hccccchhhhhhcCCCCcceeeecc
Q 003219 614 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSNGGPMQEMAHIA 692 (838)
Q Consensus 614 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FL-rde~~R~eWd~ls~G~~vqe~~~ia 692 (838)
..+|... .. ..++|.|.+|+.. | .|-+ .++...+++||..||++| .|...|.+||..+.. .+.+-.|
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 4489976 32 2238999999863 3 2333 445556799999999865 588999999975533 3444444
Q ss_pred cCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCC--ccccCCccEEcCCC
Q 003219 693 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 766 (838)
Q Consensus 693 ~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~tD~sgs~vV-yAPvD~~~m~~vm~G~D~~~--v~LLPSGF~I~Pdg 766 (838)
+....|--...... . -+.++++.++-..-+. +.++| ...|+-+.+ ...+.+ +..+++||.|-|.+
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 23334433222221 1 2345666666533333 55544 444443322 112333 45788999998853
No 71
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.75 E-value=3.1 Score=43.09 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhc--ccc
Q 003219 595 LKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ERL 672 (838)
Q Consensus 595 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrd--e~~ 672 (838)
=++.|.|..-|.. .++|... . ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~-~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVL-K--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEE-E--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 3455556555542 2789977 3 3478999998643221 2 2246677779999999999999 899
Q ss_pred chhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCC
Q 003219 673 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGG 748 (838)
Q Consensus 673 R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~tD~sgs~vVy-APvD~~~m~~vm~G~ 748 (838)
|.+||.... ..+.+.+| +..+.|..+..... . -..++...+|-......|++++. .-|+-+.+ ..
T Consensus 73 r~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred ccccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 999996432 34555565 33444433322111 1 23456766764322233556444 33433332 11
Q ss_pred CCCCc--cccCCccEEcCC
Q 003219 749 DSAYV--ALLPSGFAIVPD 765 (838)
Q Consensus 749 D~~~v--~LLPSGF~I~Pd 765 (838)
-+.+| ..+++||.|-|.
T Consensus 142 ~~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCCcEEEEeecCEEEEEEC
Confidence 23344 467888888874
No 72
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.57 E-value=1.4 Score=45.95 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=63.8
Q ss_pred CCceeccCCCCCCc----EEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceee
Q 003219 615 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMA 689 (838)
Q Consensus 615 ~~W~~l~~~~~~~d----Vrv~~r~~~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~ 689 (838)
.+|... .. .++ |+|-.|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.-
T Consensus 22 ~~W~~~-~~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~ 87 (209)
T cd08870 22 QAWQQV-MD--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHE 87 (209)
T ss_pred CcceEh-hh--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEE
Confidence 689987 33 344 888777752 22 2 33456667786 89999999999999999999643 3333
Q ss_pred ecccCCCCCceEEEEEeccCC-CCCCceEEEEecccCCCCcEEEEe
Q 003219 690 HIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA 734 (838)
Q Consensus 690 ~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~tD~sgs~vVyA 734 (838)
-|.+..+.++.|-=......= -+.++..+....+.|.-+.++|..
T Consensus 88 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 88 TLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333322324444333333211 234566665555566566665544
No 73
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.56 E-value=2 Score=43.83 Aligned_cols=134 Identities=19% Similarity=0.217 Sum_probs=81.1
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhH-HHHhhhccccchhhhhhcCCCCcceeeecc
Q 003219 614 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILSNGGPMQEMAHIA 692 (838)
Q Consensus 614 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~-vf~FLrde~~R~eWd~ls~G~~vqe~~~ia 692 (838)
.++|... .+ +.+++.+..|...+ +. .+-..+....++.+++. +.++|.|...|.+||...-. ++.+-.+.
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 4679977 43 23445454554321 11 36688889999988875 66899999999999975432 33444442
Q ss_pred cCCCCCceEEEEEeccC--CCCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCccEEcCC
Q 003219 693 KGQDHGNCVSLLRASAI--NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPD 765 (838)
Q Consensus 693 ~g~~~gn~vsllr~~~~--~~~~~~~liLQes~tD~sgs~vVyA-PvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pd 765 (838)
.++.|-....+.. --...+.+++.....|..++++|.. -++-+.. ...+.+| .++++||.|-|.
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEEC
Confidence 3344444333322 1234677777775566777766654 5554432 1123344 589999999995
No 74
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.45 E-value=2.9 Score=43.88 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=78.8
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHH-hhhccccchhhhhhcCCCCcceeeecc
Q 003219 614 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEWDILSNGGPMQEMAHIA 692 (838)
Q Consensus 614 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~-FLrde~~R~eWd~ls~G~~vqe~~~ia 692 (838)
..+|..- .. ..++|+|.+++.. +. | .+-+.-+-+++||+.||+ .|.|...|.+||.-. ..++.+..|
T Consensus 24 ~~~W~l~-~~-~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~--~~~~vi~~~- 91 (209)
T cd08906 24 EENWKFE-KN-NDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV--SACQVLQRV- 91 (209)
T ss_pred ccCCEEE-Ee-cCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccc--hhhhheeec-
Confidence 3589854 22 2478999997652 22 2 334677778999999985 789999999999632 223344444
Q ss_pred cCCCCCceEEEEEeccC---C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEcC
Q 003219 693 KGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVP 764 (838)
Q Consensus 693 ~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~tD~sgs~vVyAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~P 764 (838)
++.+.|. ..+... + -+.+++.+++-.+-+..+..++...|+-+.+ ...+.+| ...++||.|.|
T Consensus 92 ---~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 ---DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred ---cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 3333433 233221 1 2456788876655555555555555554432 2234454 35899999998
No 75
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.17 E-value=0.036 Score=61.79 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
++|++..+.......|+.+.. ..+||+..++..|++++||+..||..||-|.|-+..+-..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 445556788999999998742 3589999999999999999999999999999887665433
No 76
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.15 E-value=1.6 Score=45.54 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=98.5
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcc--ccchhhhhhcCCCCcceeee
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNGGPMQEMAH 690 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde--~~R~eWd~ls~G~~vqe~~~ 690 (838)
..++|... . ..++|+|.+|++...+|. + .++-.-+|++++.||+||.|. ..|.+||..+.. ++.+-+
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~ 88 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEA 88 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEE
Confidence 56789977 4 347999999998655553 2 445566799999999999864 478999975433 244444
Q ss_pred cccCCCCCceEEEEEeccCC-----CCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCcc--ccCCccEE
Q 003219 691 IAKGQDHGNCVSLLRASAIN-----ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYVA--LLPSGFAI 762 (838)
Q Consensus 691 ia~g~~~gn~vsllr~~~~~-----~~~~~~liLQes~tD~sgs~vVyA-PvD~~~m~~vm~G~D~~~v~--LLPSGF~I 762 (838)
| +....| ++..... -+.+++++++-...+..|.+++.. -++-+.+ ...+.+|- .-|+|+.|
T Consensus 89 i----d~~~~i--~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~ 157 (208)
T cd08903 89 I----SDDVSV--CRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFC 157 (208)
T ss_pred e----cCCEEE--EEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEE
Confidence 4 333344 4432111 344677776654344556666544 2222221 11233442 44577777
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhHHHHHHHHHHhc
Q 003219 763 VPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 763 ~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 835 (838)
.|--. ..++|.+|.-+|+= |...|...-|.+ +...+-.+++.++.+|.
T Consensus 158 ~~~~~---------------------~~~~t~v~~~~~~D----pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 158 EPVPG---------------------EPDKTQLVSFFQTD----LSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EECCC---------------------CCCceEEEEEEEec----cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 66100 01356666555543 444444444433 22333357777777764
No 77
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.65 E-value=2 Score=44.90 Aligned_cols=180 Identities=13% Similarity=0.159 Sum_probs=93.5
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeec-ccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 691 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wL-pv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 691 (838)
-..+|... . ..++|+|-.|...+ . |+. --++...+ .+|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~-~--~~~~i~Vy~r~~~~---s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPF-I--EKKDMLVWRREHPG---T--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEE-E--EcCceEEEEeccCC---C--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 34569877 3 25679998888632 2 222 34554545 699999999999999999999643 333333
Q ss_pred ccCCCCCceEEEEEeccC-CCCCCceEEEEecccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CccccCCccEEcCCC
Q 003219 692 AKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDAA-GSLVVYA-PVDIPAMHVVMNGGDSA--YVALLPSGFAIVPDG 766 (838)
Q Consensus 692 a~g~~~gn~vsllr~~~~-~~~~~~~liLQes~tD~s-gs~vVyA-PvD~~~m~~vm~G~D~~--~v~LLPSGF~I~Pdg 766 (838)
.+..+.++.|--.+.... --..+++.+-+-...|.. +.++|.. -|+-+.. ..-+. -|..+.+|+.|-|.+
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~ 159 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHK 159 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCC
Confidence 332233444433333322 123345555444334543 3434432 1221110 01111 244567777777742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhHHHHHHHHHHhc
Q 003219 767 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 835 (838)
.. ..+|+-++.-++ . .|...|..--|.. +...+-.++++++.|..
T Consensus 160 ~~--------------------~~~~~~~~~~~~--~--dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 160 SF--------------------DEPGFEFVLTYF--D--NPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CC--------------------CCCCeEEEEEEE--e--CCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 11 114666654333 2 4444443322211 33333348888888864
No 78
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=93.37 E-value=4.2 Score=42.79 Aligned_cols=172 Identities=20% Similarity=0.297 Sum_probs=98.7
Q ss_pred CceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCC
Q 003219 616 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQ 695 (838)
Q Consensus 616 ~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g~ 695 (838)
+|..+ ...+.+.+..+|.. +|.| +.--+.++=+|.+|..|...|-|+ |.+||...- .++.+..|
T Consensus 28 ~w~~~---~~~~~~el~~~k~~--~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSY---STSEQAELSYKKVS--EGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCccc---CCCCcEEEEEeccC--CCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 78766 23577999999863 4554 567778888898888888777775 999997431 12333333
Q ss_pred CCCceEEEEEeccCCC-CCCceEEEEecccC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEcCCCCCCCCC
Q 003219 696 DHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGP 772 (838)
Q Consensus 696 ~~gn~vsllr~~~~~~-~~~~~liLQes~tD-~sgs~vVyAP-vD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg~~~~~~ 772 (838)
++.+.|-=..++..-+ ...++.+++-..+| .-|++++... |+-+.+- .++ --+..+-+|+.|-|.|
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~g------ 160 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPCG------ 160 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEECC------
Confidence 3333333333333322 23456555443333 4677777665 4433211 000 1122334444444421
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhHHHHHHHHHHhc
Q 003219 773 LANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 835 (838)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~ 835 (838)
.|+|-||--.|+= |...+..=-+-....|++.-+.||+..+.
T Consensus 161 -----------------~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 161 -----------------SGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred -----------------CCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 2568887654443 44444445556678899999999998764
No 79
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.28 E-value=0.025 Score=47.63 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchh
Q 003219 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (838)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (838)
.++.|+++|...+++.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 457799999999999999999999999999999999996554
No 80
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=92.82 E-value=1.3 Score=47.67 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 680 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 680 (838)
...++|..- . ..++|+|-++. +. -+++-+.-+-+++|++.||++|.|...|.+||...
T Consensus 53 a~~~~W~l~-~--dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 53 AAKSGWEVT-S--TVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred cccCCCEEE-E--ccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhh
Confidence 346899865 3 46899999984 22 15788888888999999999999999999999743
No 81
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=92.66 E-value=1.1 Score=48.01 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=48.7
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 691 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 691 (838)
..++|..- . ..++|+|.++.+ ..+++-..=.-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~-~--~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA-S--STTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE-E--cCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46799865 3 468999999973 1244455555589999999999999999999997 33445555555
No 82
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.90 E-value=4.7 Score=40.95 Aligned_cols=150 Identities=20% Similarity=0.321 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhh
Q 003219 597 LAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEW 676 (838)
Q Consensus 597 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eW 676 (838)
|+++....|.. ......++|... ......++ .+++... +.+ ..+...++..-++.++..+|..|.|... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~-~~~~~~~~--~~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLY-KDKKNGDV--YYKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEE-EEETTTCE--EEEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEe-EccCCCeE--EEEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 45555556653 335677799988 42222333 3444321 111 1355678888999888877777777444 99
Q ss_pred hhhcCCCCcceeeecccCCCCCceEEEEEeccCC---CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCCCCCC
Q 003219 677 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAY 752 (838)
Q Consensus 677 d~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~tD~sgs~vVy-APvD~~~m~~vm~G~D~~~ 752 (838)
|...- .++.+..| +++..|.....+..- -..++.++++-...+.-+.++|. ..||-+..... .+.+
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 97543 23344444 233555555444322 22356777766444566765554 57877764322 2344
Q ss_pred cc--ccCCccEEcCC
Q 003219 753 VA--LLPSGFAIVPD 765 (838)
Q Consensus 753 v~--LLPSGF~I~Pd 765 (838)
|- +++|||.|-|.
T Consensus 143 VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 143 VRAEILISGWVIRPL 157 (206)
T ss_dssp EEEEEESEEEEEEEE
T ss_pred ceeeeeeEeEEEEEc
Confidence 44 89999999995
No 83
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=89.51 E-value=22 Score=37.56 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=95.6
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh-cCCCCcceeeeccc
Q 003219 615 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL-SNGGPMQEMAHIAK 693 (838)
Q Consensus 615 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l-s~G~~vqe~~~ia~ 693 (838)
.+|..+ +..+++.+..+|.. +|.|. =--++++=+|.+|..|+..+-+ .|.+||.- ..+ ..+-+|
T Consensus 27 k~w~~~---~~~~~~e~~ykK~~--d~~~l---k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~---~~ie~l-- 91 (205)
T cd08909 27 KGWISC---SSSDNTELAYKKVG--DGNPL---RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQW---KVVETL-- 91 (205)
T ss_pred cCCccc---CCcCCeEEEEecCC--CCCce---EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhccee---EEEEEe--
Confidence 478766 23578889999864 34442 2345688889666666555544 59999962 222 222222
Q ss_pred CCCCCceEEEEEeccCCCC-CCceEEEEecccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEcCCCCCCC
Q 003219 694 GQDHGNCVSLLRASAINAN-QSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSR 770 (838)
Q Consensus 694 g~~~gn~vsllr~~~~~~~-~~~~liLQes~tD-~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg~~~~ 770 (838)
+..+.|=-.+++...+- ..+..+++-..+| ..|++++ +..|+-+.-.. . |+ --+.++=+||.|-|-|.
T Consensus 92 --d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~-~-g~--VRa~~~~~gylI~P~~~--- 162 (205)
T cd08909 92 --DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL-L-GG--VRAVVLDSQYLIEPCGS--- 162 (205)
T ss_pred --CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC-C-Cc--EEEEEEcCcEEEEECCC---
Confidence 22244444444433322 3455555553344 5776644 33344332111 1 11 12445668888888422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhHHHHHHHHHHhc
Q 003219 771 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 835 (838)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~ 835 (838)
|+|.||---|+=.... +..=-+-.+..|++.-+.||+..+.
T Consensus 163 --------------------g~trvt~i~~vDpkG~----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 --------------------GKSRLTHICRVDLKGH----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred --------------------CCEEEEEEEEecCCCC----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3577775555544333 2222445578888889999998764
No 84
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=89.20 E-value=13 Score=40.10 Aligned_cols=185 Identities=18% Similarity=0.183 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCC-----Cc-EEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHh
Q 003219 593 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD-----ED-VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNF 666 (838)
Q Consensus 593 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~-----~d-Vrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~F 666 (838)
-|+.||..-+.-|- .+.-...--|.+. .+.+. |. .+++.+.. .+..+...+..+-++-.+.+.|..|.++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~-~~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKS-PGMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceec-CCCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 37889999999998 4445557789987 54321 22 22222221 1112234577888999999999999999
Q ss_pred hhccccchh-hhhhcCCCCcceeeecccCC--CCCceEEEEEeccCC----CCCCceEEEEecccCCCCcEEEEe-ecch
Q 003219 667 LRDERLRSE-WDILSNGGPMQEMAHIAKGQ--DHGNCVSLLRASAIN----ANQSSMLILQETCTDAAGSLVVYA-PVDI 738 (838)
Q Consensus 667 Lrde~~R~e-Wd~ls~G~~vqe~~~ia~g~--~~gn~vsllr~~~~~----~~~~~~liLQes~tD~sgs~vVyA-PvD~ 738 (838)
|.|..++.+ .+-.+.-..+ +.-|.+|. .++..+.|+..+-.- ..-.+..+|.-|+--.-|+.+|-- .+|-
T Consensus 79 lmD~~kW~~~Fp~iv~~a~t--l~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~ 156 (229)
T cd08875 79 LMDVNKWSELFPGIVSKAKT--LQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDG 156 (229)
T ss_pred HhChhhhhhhhhhhcceeeE--EEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecc
Confidence 999555554 3333332222 22233443 446677777755211 123689999986666788776643 3442
Q ss_pred hhhhhhhcCCCCC---CccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccc
Q 003219 739 PAMHVVMNGGDSA---YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKL 811 (838)
Q Consensus 739 ~~m~~vm~G~D~~---~v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l 811 (838)
.. +..-+. .--.+||||-|=|- .+|+|-+|+-=++-++..+.-.+
T Consensus 157 ~~-----~~p~~~~~~r~~~~PSGcLIq~~-----------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 157 VQ-----TAPPPASFVRCRRLPSGCLIQDM-----------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred cc-----cCCCCCCccEEEEecCcEEEEEC-----------------------CCCceEEEEEEEEeccCCccccc
Confidence 10 111111 23589999999772 12578899888887776544444
No 85
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=88.82 E-value=1.2 Score=42.78 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCCCHHHHH-HHHHhhhcCCCCCHHHHHHHHHhhccccceeeeccc
Q 003219 139 HRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (838)
Q Consensus 139 trfT~~Ql~-~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 183 (838)
++|+.++.. .+...+... ....++|+++|+++.++..|.+
T Consensus 11 r~ys~EfK~~aV~~~~~~g-----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEPG-----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 457776644 444444322 2356789999999999999953
No 86
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.38 E-value=7.2 Score=36.62 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=64.6
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecC
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~ 481 (838)
+-.+...+.++.++|.|.+.|.+-+|.+. .+++++. +...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 34566788899999999999999999854 4566642 22221 222222 232 2232223455543344
Q ss_pred CeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhh
Q 003219 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLI 548 (838)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~ 548 (838)
..+++.-..... .. + ...=--+-+++. +|+|+ |+|.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~--v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTR--LTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEE--EEEEEEEEEcc-ChhhhCHHHH
Confidence 554444221110 00 1 111122346777 67799 99999999653 3444455554
No 87
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=88.28 E-value=9.9 Score=37.53 Aligned_cols=140 Identities=11% Similarity=0.138 Sum_probs=74.7
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+-+|.-.+..+-+++-|..+|-+.||. +.-++|++.|..+ . .....++...+ ..+.-|.=|.+. .
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~----~~~~~~l~~~~~~----~--~~r~~i~~~~~--g~~~~w~s~~~~--~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSE----YAEAEVLEEDGDT----V--RFRLTMHPDAN--GTVWSWVSERTL--D 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccc----eEEEEEEEecCCe----E--EEEEEEEeccC--CEEEEEEEEEEe--c
Confidence 4556777889999999999999999999 5777888754322 1 11122223222 122223234332 3
Q ss_pred CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 003219 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 560 (838)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 560 (838)
...|-|.=..+.. .+ + ..+=--..+++.++| |+ |++..+++...-. .+.-+++....--.-+.=+
T Consensus 71 ~~~~~i~~~~~~~---~p----~---~~m~~~W~f~~~~~g-T~--V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 135 (146)
T cd08860 71 PVNRTVRARRVET---GP----F---AYMNIRWEYTEVPEG-TR--MRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQM 135 (146)
T ss_pred CCCcEEEEEEecC---CC----c---ceeeeeEEEEECCCC-EE--EEEEEEEEECCCC--ccchHHHHHHHhcccHHHH
Confidence 3334333112111 11 1 122223446888877 99 9999998865211 2222233222222234457
Q ss_pred HHHHHHHHH
Q 003219 561 ATLQRQCEC 569 (838)
Q Consensus 561 atLqR~cer 569 (838)
++|.+.+|+
T Consensus 136 ~~Lk~~aE~ 144 (146)
T cd08860 136 ARIKKKIEA 144 (146)
T ss_pred HHHHHHhhh
Confidence 777777775
No 88
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=87.36 E-value=4.8 Score=42.42 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=70.2
Q ss_pred ceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEee-eeeecC-CeEEEEEEeccCCcCCCCCCCccceeec
Q 003219 432 RTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRL 509 (838)
Q Consensus 432 ~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRy-ckq~~~-g~waVvDvSld~~~~~~~~~~~~~~~r~ 509 (838)
.++.++++..+. +....+.|.+..+|-| +..|+|..|.. +...+. ..++|+..+++.-.-......++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 345555544332 2356888899999999 89999999999 666652 67899999987432110112478887 6
Q ss_pred CCceeEeecCC---CceeeeEEEEEeeeeccc-cccc
Q 003219 510 PSGCVVQDMPN---GYSKLQVTWVEHAEYDES-QVHQ 542 (838)
Q Consensus 510 PSGclIq~~~n---G~sk~~VtwVeH~e~d~~-~vh~ 542 (838)
=||..|+..|. +-.+ |+|+==...|+. .||.
T Consensus 150 ~SgE~~~~~p~~~~~~~~--vew~maT~sDpGG~IP~ 184 (208)
T cd08864 150 ASVEKISYLPDADGKSNK--VEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEEcCccCCCcCC--EEEEEEEeeCCCCcCcH
Confidence 79999998885 3678 999984444454 2543
No 89
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.26 E-value=11 Score=35.77 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=73.2
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccce-eeEEeeeeee
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQH 479 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re-~~flRyckq~ 479 (838)
.+-.|..++..+-++|.|.+.|.+-+|.+ ...+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~- 62 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR- 62 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE-
Confidence 45567778889999999999999999994 5666675421 121 1 1111 111 222333322
Q ss_pred cCCeEEEEEEeccCCcCCCCCCCccceeec----C--Cce-eEeecCC-CceeeeEEEEEeeeeccccccccchhhhccc
Q 003219 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SGC-VVQDMPN-GYSKLQVTWVEHAEYDESQVHQLYKPLIISG 551 (838)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~----P--SGc-lIq~~~n-G~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg 551 (838)
++.++... .+.+ ..++++.. + .|+ -+++.++ |.|+ |+|--|++... .+ +-++++.-
T Consensus 63 -----v~~~~~~~--~~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~--v~~~~~~~~~~-~~---p~~l~~~~ 126 (144)
T cd08866 63 -----VVLELRER--EEFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTL--LTYEVEVKPDF-FA---PVFLVEFV 126 (144)
T ss_pred -----EEEEEEEe--cCCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEE--EEEEEEEEeCC-CC---CHHHHHHH
Confidence 12221110 0000 01111110 0 122 3678887 7899 99988777653 23 33666666
Q ss_pred hhHHHHHHHHHHHHHHH
Q 003219 552 MGFGAQRWVATLQRQCE 568 (838)
Q Consensus 552 ~afGA~rWlatLqR~ce 568 (838)
+-=+.++-++.|+++||
T Consensus 127 ~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 127 LRQDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66667778888888776
No 90
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=86.49 E-value=39 Score=35.42 Aligned_cols=196 Identities=11% Similarity=0.112 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhh-ccc
Q 003219 593 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DER 671 (838)
Q Consensus 593 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLr-de~ 671 (838)
+-.++++.....|-.-. ....+|... . .+.++++|.++... +. | --.+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~-~-~~~~gi~v~s~~~~---~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTE-I-VAENGDKVLSKVVP---DI--G--KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEE-E-ecCCCCEEEEEEcC---CC--C--cEEEEEEEecCCHHHHHHHHHhchh
Confidence 33445555555555444 245689865 2 23567888886652 22 1 234455677999999996666 568
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCC
Q 003219 672 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG 748 (838)
Q Consensus 672 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~tD~sgs~vVyAPvD~~~m~~vm~G~ 748 (838)
.+.+|+..+.. ++.+.+| +...+|.-....+. . -+.+++++++-..-+..+..++.--++.+.+ ..
T Consensus 74 ~~~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~-----P~ 142 (209)
T cd08905 74 QMGEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLM-----PE 142 (209)
T ss_pred hhceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCC-----CC
Confidence 99999974432 2223333 33344444321111 1 3446777766533332222222222333221 11
Q ss_pred CCCC--ccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhHH
Q 003219 749 DSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISC 825 (838)
Q Consensus 749 D~~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~ 825 (838)
-+.+ +...++|+.+-|-+.. .+.|.+|.-+++= |...|..--|.. +-...-.
T Consensus 143 ~~~~VR~~~~~~~w~l~p~~~~---------------------~~~t~v~~~~~~D----pkG~iP~~lvN~~~~~~~~~ 197 (209)
T cd08905 143 QKGFIRAENGPTCIVLRPLAGD---------------------PSKTKLTWLLSID----LKGWLPKSIINQVLSQTQVD 197 (209)
T ss_pred CCCeEEEEeeccEEEEEECCCC---------------------CCceEEEEEEeec----CCCCCCHHHHHHHhHHhHHH
Confidence 1222 2356666666662110 1357666555543 333343333333 2333335
Q ss_pred HHHHHHHHhc
Q 003219 826 TVQKIKAALQ 835 (838)
Q Consensus 826 tv~~Ik~Al~ 835 (838)
|++.+|..|.
T Consensus 198 ~~~~Lr~~~~ 207 (209)
T cd08905 198 FANHLRQRMA 207 (209)
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 91
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=85.72 E-value=2.6 Score=41.25 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh-ccccceeeecccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHh
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L-gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~e 217 (838)
.+|+.+++..+- -.+|=+.| |++...|--|=|.||+-.-|--.......--++.+.|..++..+..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888877661 12333344 7888888889898887644433322222233334445555555554
Q ss_pred hhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHh
Q 003219 218 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (838)
Q Consensus 218 a~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (838)
|..+|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888876544
No 92
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=85.63 E-value=8.1 Score=41.16 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=78.3
Q ss_pred EechhhHHHHhcCh---hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCC
Q 003219 406 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (838)
Q Consensus 406 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g 482 (838)
.+.|..+-+.|+|. .+|=.+ |.+-.|++..+. .|+ .++|=+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 35688899999995 599888 444455555441 222 78999999998875 5999999887777777
Q ss_pred eEEEEEEeccCCcCCCCCCCccceeecCCceeEe-----ecCCCceeeeEEEEEe
Q 003219 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNGYSKLQVTWVEH 532 (838)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq-----~~~nG~sk~~VtwVeH 532 (838)
.-.||-.|+..-.- |.....+|..-.=||.+|+ +-++| |.+-++|++|
T Consensus 131 ~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~-~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQG-CACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCc-cEEEEEEEEC
Confidence 77777777663211 1111357888889999999 44444 4434777665
No 93
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=85.21 E-value=1.5 Score=45.91 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeee
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 690 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ 690 (838)
-.+.+|... . ..++|+|-+|... |. .+.--++...++ ++|+.|+++|.|...|.+||...- |+..
T Consensus 22 ~~~~~W~l~-~--~~~~i~Vy~r~~~---~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~ 87 (207)
T cd08910 22 LDGAAWELL-V--ESSGISIYRLLDE---QS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYE 87 (207)
T ss_pred CCCCCeEEE-E--ecCCeEEEEeccC---CC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hhee
Confidence 344569977 3 3568999988762 22 234677777889 999999999999999999998532 3222
Q ss_pred cccCCCCCceEEEEEeccCC-CCCCceEEEEe
Q 003219 691 IAKGQDHGNCVSLLRASAIN-ANQSSMLILQE 721 (838)
Q Consensus 691 ia~g~~~gn~vsllr~~~~~-~~~~~~liLQe 721 (838)
. . ++++.|--.+.+..= -+.+++.+++.
T Consensus 88 ~--~-~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K--E-CDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e--c-CCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1 334555555444221 34456766665
No 94
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=84.77 E-value=0.55 Score=56.64 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
...|..+|..|..|+..+...+|.+.||+.+.||.||++++++...-
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 78889999999999999999999999999999999999999887643
No 95
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=83.98 E-value=13 Score=35.20 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=77.4
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+..|...+..+.+++-|.+.|.+.+|.+ ...+|+..+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 34556677888999999999999999994 5566666432 12 22333333332 234443 333321 1
Q ss_pred CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 003219 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 560 (838)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 560 (838)
+. .+ -=.++++ + + ..+=--..+++.++|.|+ |+|.-|++..-. |+..|++.-+.=-.++-|
T Consensus 68 ~~-~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~--v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l 128 (138)
T cd07813 68 PE-SI-EAELVDG----P----F---KHLEGEWRFKPLGENACK--VEFDLEFEFKSR----LLEALAGLVFDEVAKKMV 128 (138)
T ss_pred CC-EE-EEEecCC----C----h---hhceeEEEEEECCCCCEE--EEEEEEEEECCH----HHHHHHHHHHHHHHHHHH
Confidence 33 22 1112222 1 1 111223457889999999 999999998733 333333333333366778
Q ss_pred HHHHHHHHH
Q 003219 561 ATLQRQCEC 569 (838)
Q Consensus 561 atLqR~cer 569 (838)
.++.+.|++
T Consensus 129 ~~f~~~~~~ 137 (138)
T cd07813 129 DAFEKRAKQ 137 (138)
T ss_pred HHHHHHHhh
Confidence 888777765
No 96
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.42 E-value=30 Score=32.21 Aligned_cols=132 Identities=13% Similarity=0.153 Sum_probs=72.8
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+..|...+.++.+.|.|.+.|.+.+|.+ ..++++..+.. |.-...+ +.+- ..+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC-
Confidence 45567788999999999999999999994 55666655432 2222222 2221 2244555556665432
Q ss_pred CCe--EEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHH
Q 003219 481 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 558 (838)
Q Consensus 481 ~g~--waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~r 558 (838)
... |-+.+. .. +.... .-.-+++.++ +|+ |+|.-+++..- .+ ...++....--+.+.
T Consensus 73 ~~~i~~~~~~~-------~~----~~~~~---~~~~~~~~~~-~t~--vt~~~~~~~~~-~~---~~~~~~~~~~~~~~~ 131 (140)
T cd07819 73 AGSVSWTLVEG-------EG----NRSQE---GSYTLTPKGD-GTR--VTFDLTVELTV-PL---PGFLKRKAEPLVLDE 131 (140)
T ss_pred CCcEEEEEecc-------cc----eeEEE---EEEEEEECCC-CEE--EEEEEEEEecC-CC---CHHHHHHhhhHHHHH
Confidence 222 222111 11 11111 1256788877 599 99999998754 23 333343333333444
Q ss_pred HHHHHHHH
Q 003219 559 WVATLQRQ 566 (838)
Q Consensus 559 WlatLqR~ 566 (838)
-+..|.++
T Consensus 132 ~~~~l~~~ 139 (140)
T cd07819 132 ALKGLKKR 139 (140)
T ss_pred HHHhHhhh
Confidence 45555443
No 97
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=82.31 E-value=2.1 Score=46.12 Aligned_cols=58 Identities=26% Similarity=0.385 Sum_probs=43.4
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 680 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 680 (838)
...++|..- .. .++|+|.++.. +. +++-+.=+-+++|++.||++|.|...|.+||...
T Consensus 56 ~~~~~W~l~-~~--~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLS-SE--KNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEE-Ec--cCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhc
Confidence 456689865 33 58999999653 11 2344555677999999999999999999999743
No 98
>PRK10724 hypothetical protein; Provisional
Probab=81.53 E-value=33 Score=34.61 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=83.2
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeee
Q 003219 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (838)
Q Consensus 400 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~ 479 (838)
+.+.+|.-.+.++.+.+.|.++|-+.+|- |...+|+.-.. ++ +.+++.+--.-+ ++-|.-|+...
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~----~~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPG----CTGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcc----cCeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 44678888999999999999999999888 66677776433 22 467776644433 33333333332
Q ss_pred cCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 003219 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 559 (838)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rW 559 (838)
.++ .+.+ ..++ ++ .+.+=.-.-+++.++|.|+ |+.--+.|+.. .||.+++....-=.|++-
T Consensus 83 ~~~-~I~~-~~~~----Gp-------F~~l~g~W~f~p~~~~~t~--V~~~l~fef~s----~l~~~~~~~~~~~~~~~m 143 (158)
T PRK10724 83 SNQ-SILM-QLVD----GP-------FKKLIGGWKFTPLSQEACR--IEFHLDFEFTN----KLIELAFGRVFKELASNM 143 (158)
T ss_pred CCC-EEEE-EecC----CC-------hhhccceEEEEECCCCCEE--EEEEEEEEEch----HHHHHHHHHHHHHHHHHH
Confidence 233 3322 1222 22 1233334446788878899 99988888653 344445533333446677
Q ss_pred HHHHHHHHHHH
Q 003219 560 VATLQRQCECL 570 (838)
Q Consensus 560 latLqR~cerl 570 (838)
+.+..+-|+.+
T Consensus 144 v~AF~~Ra~~~ 154 (158)
T PRK10724 144 VQAFTVRAKEV 154 (158)
T ss_pred HHHHHHHHHHH
Confidence 76765556554
No 99
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.68 E-value=9.3 Score=41.04 Aligned_cols=60 Identities=30% Similarity=0.360 Sum_probs=36.9
Q ss_pred cchhhHHHHHHHHhh--hhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHH
Q 003219 183 QNRRTQMKTQLERHE--NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (838)
Q Consensus 183 QNRRaK~Kk~~~r~e--~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 256 (838)
||-|-|.|.+..+.| -..|..+|++|+.||++|++..++.. .+.+.|+.+-..|++||..
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~--------------~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLL--------------AKNHELDSELELLRQELAE 143 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHh
Confidence 555666665554443 34577788888888888888665322 2445555555555655543
No 100
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=80.37 E-value=1.5 Score=36.33 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchh
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (838)
||+|..+|.+|...+-..++... ...++|+++|++..+|..|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 46677899988888878887765 577899999999999999988753
No 101
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.23 E-value=4 Score=33.10 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhh
Q 003219 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (838)
Q Consensus 193 ~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (838)
+.+.++..|++.++.|++++.++. .||..|+.|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~----------------------------~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK----------------------------KENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence 345678888888888888876655 4777788888776653
No 102
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=78.14 E-value=51 Score=30.67 Aligned_cols=134 Identities=9% Similarity=0.003 Sum_probs=71.1
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecC
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~ 481 (838)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. .+. ++.+-.|....+++ ..|++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~------~~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD------TRS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC------Cce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 3445567889999999999999999974 44565532 111 11122232333433 345543 334
Q ss_pred CeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003219 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 561 (838)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWla 561 (838)
+..++.. ..++.. . .....+ +++.++|.|+ ||+--|.+......-.++-+++..-.-=..+++|.
T Consensus 67 ~~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~--vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (139)
T cd07817 67 NERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTR--VTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLR 131 (139)
T ss_pred CCEEEEE-ECCCCC--C----cceEEE------EEECCCCCeE--EEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHH
Confidence 4433222 222211 1 111222 4677777899 99999988765333334344443333333455555
Q ss_pred HHHHHHH
Q 003219 562 TLQRQCE 568 (838)
Q Consensus 562 tLqR~ce 568 (838)
.|.+++|
T Consensus 132 ~lk~~aE 138 (139)
T cd07817 132 RFKQLVE 138 (139)
T ss_pred HHHHHhh
Confidence 5555544
No 103
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=77.83 E-value=39 Score=36.24 Aligned_cols=98 Identities=14% Similarity=0.322 Sum_probs=61.2
Q ss_pred cCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 003219 611 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 688 (838)
Q Consensus 611 ~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl-~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 688 (838)
+-..++|... . ..++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-... +..+
T Consensus 22 ~~~~~~W~l~-~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~~vi 91 (235)
T cd08872 22 DVGADGWQLF-A--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--FHVV 91 (235)
T ss_pred cCCCCCCEEE-E--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--eEEE
Confidence 4455689977 3 35789999987633 1 3332 357777789 9999999999999999999974322 2333
Q ss_pred eecccCCCCCceEEEEEeccC-CCCCCceEEEEec
Q 003219 689 AHIAKGQDHGNCVSLLRASAI-NANQSSMLILQET 722 (838)
Q Consensus 689 ~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQes 722 (838)
-+| +..+.|--...+.. -.+++++.++.-.
T Consensus 92 e~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~~ 122 (235)
T cd08872 92 ETL----SQDTLIFHQTHKRVWPAAQRDALFVSHI 122 (235)
T ss_pred Eec----CCCCEEEEEEccCCCCCCCcEEEEEEEE
Confidence 333 23344333332221 1255677766553
No 104
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=77.63 E-value=16 Score=34.47 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.2
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccc
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPC 428 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~ 428 (838)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456667888999999999999998887
No 105
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=77.45 E-value=4.8 Score=42.45 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 680 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 680 (838)
...+|..- .. .+||.|..+.+...+|.- - .+---++.-|+.|+||+.+..+|.+||...
T Consensus 21 ~~~~Wkl~-k~--~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 21 LEEEWRVA-KK--SKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred cccCcEEE-Ee--CCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 56799866 43 389999999886545532 1 111112788899999999999999999754
No 106
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=77.35 E-value=37 Score=31.34 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=69.1
Q ss_pred eeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCC
Q 003219 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (838)
Q Consensus 403 ~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g 482 (838)
..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. ..|+...++... . +.+. -+|.. .++.
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCcc
Confidence 446678889999999999999888863 4566655432 234432222110 0 1111 01111 1111
Q ss_pred eEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003219 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 562 (838)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 562 (838)
.-.|. ..+... +.+ +...-.-+-+.+.++|.|+ |+|..+.+.... +..+++...+-=+-+..++.
T Consensus 70 ~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~--v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ 134 (140)
T cd07821 70 ERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTR--VTWTAEFDPPEG----LTDELARAFLTGVYRAGLAA 134 (140)
T ss_pred CCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccE--EEEEEEEecCCC----cchHHHHHHHHHHHHHHHHH
Confidence 00111 111110 000 1111123567888888899 999999887755 33344444444445556666
Q ss_pred HHHHHH
Q 003219 563 LQRQCE 568 (838)
Q Consensus 563 LqR~ce 568 (838)
|.++||
T Consensus 135 L~~~~~ 140 (140)
T cd07821 135 LKAALE 140 (140)
T ss_pred HHHhhC
Confidence 666653
No 107
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.83 E-value=7.2 Score=35.27 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH----HHhhhhhhc
Q 003219 190 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 264 (838)
Q Consensus 190 Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~~ 264 (838)
|-++.-..-..|+-+.+.|+.+|..+.+.... .......|..||..||+|.. |++++.+|+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~--------------~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455667888888888888888886652 11234569999999999974 677776653
No 108
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.38 E-value=9.1 Score=34.03 Aligned_cols=49 Identities=35% Similarity=0.569 Sum_probs=34.8
Q ss_pred HHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH----HHhhhhhh
Q 003219 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (838)
Q Consensus 194 ~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (838)
.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++.+|
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677788888888877775 34578889999998875 55565554
No 109
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=69.93 E-value=92 Score=28.71 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.5
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEee
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (838)
+..|...+.++-++|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4467788999999999999999988874 5666666
No 110
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=68.69 E-value=6 Score=43.61 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=26.3
Q ss_pred hhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003219 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (838)
Q Consensus 197 e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (838)
....+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 334566777777777776654442 122337788888888663
No 111
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.15 E-value=14 Score=32.67 Aligned_cols=55 Identities=31% Similarity=0.483 Sum_probs=35.3
Q ss_pred hhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH----HHHhhhhhhc
Q 003219 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 264 (838)
Q Consensus 196 ~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el----~r~~~~~~~~ 264 (838)
.--..|+-+.+.|+.+|..+..... +..-....|..||..||+|- +|++++.+|+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q--------------~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345566677777777776665443 11123346889999999986 4777777654
No 112
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.98 E-value=60 Score=29.96 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.7
Q ss_pred eeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 513 CVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 513 clIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
+.+.+.+.|.|+ |+|.+... .....++..++...+.-+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~--~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTR--FVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEE--EEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 346777678899 88864222 1122345666777777788888999988886
No 113
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.64 E-value=14 Score=34.00 Aligned_cols=46 Identities=30% Similarity=0.492 Sum_probs=35.1
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhhh
Q 003219 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (838)
Q Consensus 201 l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (838)
+.++++.|..|.+.|++.+. ..++.-+...||.+|++|+.|+..+-
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778777777664 34567788899999999999988653
No 114
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.78 E-value=9.8 Score=41.29 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=23.9
Q ss_pred hhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003219 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (838)
Q Consensus 197 e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (838)
....+++||++|++|+..++..+. +.+.|+.||.+||+.|
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL 109 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 344456666666666666655442 3345667777777755
No 115
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=61.43 E-value=16 Score=43.44 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=14.0
Q ss_pred hhhhhHhhhhhhHHHHHHH
Q 003219 239 EEQHLRIENARLKDELDRV 257 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~ 257 (838)
|.++|+.||+.||++|+.+
T Consensus 317 Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5667778888888877654
No 116
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=58.74 E-value=1.9 Score=37.18 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecc
Q 003219 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (838)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 182 (838)
++|++||+++...+-..+.. ......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHH
Confidence 45567999887777666521 23467889999999999999884
No 117
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.49 E-value=25 Score=44.15 Aligned_cols=57 Identities=28% Similarity=0.361 Sum_probs=40.7
Q ss_pred hHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhhhh
Q 003219 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (838)
Q Consensus 200 ~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~~ 262 (838)
.++..++.|..+-.-|+++|.+. |....+..+.+-.||.++|+|||+-|-|++.+.+
T Consensus 336 ~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34444555566666678888765 3333344578999999999999999999887643
No 118
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=58.14 E-value=1.1e+02 Score=29.24 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=31.6
Q ss_pred EeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 515 VQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 515 Iq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
+++. +|+|+ |+|..+.++.-.....++.+++...+.=...+.|..|++++|
T Consensus 99 ~~~~-~~gT~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTK--VTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceE--EEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699 999999887755444455555544333334555666655554
No 119
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=57.13 E-value=39 Score=41.85 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCCceeccCCCCCCcEEEEEecC-CCCCCCCCceEEEEEEeeecccChhHHHHhhhccc-cchhhhhhcCCCCcceee
Q 003219 612 STVHKWNKLNAGNVDEDVRVMTRKS-VDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDER-LRSEWDILSNGGPMQEMA 689 (838)
Q Consensus 612 s~~~~W~~l~~~~~~~dVrv~~r~~-~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~-~R~eWd~ls~G~~vqe~~ 689 (838)
+....|.-+..- .++||+-.-. .+.-+...+-++ ++-=-++.+|+.||++|-+.. .|.|||....-+ +-+-
T Consensus 195 ~~~~~Wr~~~c~---NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~--~vIE 267 (719)
T PLN00188 195 FSRKHWRLLQCQ---NGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYG--SLVE 267 (719)
T ss_pred cccCCeEEEEee---ccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccce--EEEE
Confidence 555667666222 3567664332 121111122222 233346789999999997444 999999754322 2222
Q ss_pred ecccCCCCCceEEEEEeccC----CCCCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEE
Q 003219 690 HIAKGQDHGNCVSLLRASAI----NANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAI 762 (838)
Q Consensus 690 ~ia~g~~~gn~vsllr~~~~----~~~~~~~liLQes~tD~sgs~vV-yAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I 762 (838)
+| +...+|.--++... --...+..++.--.-+.-|+|++ |-.|.-+.-- -=+.+| -+-|+||.|
T Consensus 268 ~I----D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cP-----P~kG~VRg~~~pGGwiI 338 (719)
T PLN00188 268 EV----DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCG-----PQPGFVRAHLESGGFNI 338 (719)
T ss_pred Ee----cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCC-----CCCCeEEEEEeCCEEEE
Confidence 33 44445553343311 12335666666533456677765 4455543310 002232 377999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003219 763 VPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 804 (838)
Q Consensus 763 ~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 804 (838)
.|--... ...+|+||--+|+=..
T Consensus 339 sPL~~~~-------------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 339 SPLKPRN-------------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EECCCCC-------------------CCCceEEEEEEEEccC
Confidence 9931110 1146888888887554
No 120
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=55.22 E-value=1.7e+02 Score=26.80 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=70.0
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecC
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~ 481 (838)
+..|...+.++-++|-|.++|.+-.|.+ ..+++++.+..+ .|+.-.+...+ -+ .+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~~--~g~~~~~~~~~---~g---~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPVG--VGTRYHQVRKF---LG---RRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCCc--CccEEEEEEEe---cC---ceEEEEEEEEEecCC
Confidence 3456667889999999999999999986 456766544322 34432222221 11 111122344432222
Q ss_pred CeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003219 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 561 (838)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWla 561 (838)
..+. ... .. ++ ...+ .=.-+++.++ +|+ |+|-.+++. ..+-.++.+++...+.=+-++++.
T Consensus 72 ~~~~-~~~-~~----~~-----~~~~---~~~~~~~~~~-~t~--v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 132 (140)
T cd08865 72 RRVV-FRG-SS----GP-----FPYE---DTYTFEPVGG-GTR--VRYTAELEP--GGFARLLDPLMAPAFRRRARAALE 132 (140)
T ss_pred cEEE-EEe-cC----CC-----cceE---EEEEEEEcCC-ceE--EEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHH
Confidence 2221 111 11 11 0000 0133667666 499 999998876 333345555554444444556666
Q ss_pred HHHHHHH
Q 003219 562 TLQRQCE 568 (838)
Q Consensus 562 tLqR~ce 568 (838)
.|.+.+|
T Consensus 133 ~lk~~~e 139 (140)
T cd08865 133 NLKALLE 139 (140)
T ss_pred HHHHHhh
Confidence 6655544
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.29 E-value=17 Score=42.70 Aligned_cols=55 Identities=29% Similarity=0.387 Sum_probs=27.9
Q ss_pred HHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhhh
Q 003219 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (838)
Q Consensus 194 ~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (838)
...+|..+++||++|++....+.+.+.+.. .-+.++|..|-..|++|.+++....
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~~i~~av-------------~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQQIQQAV-------------QSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655444444443211 1233455555566666665554443
No 122
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=50.30 E-value=7.1 Score=50.56 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=68.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhhhhhHHHHhHHHHHhhH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENM 213 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~ 213 (838)
.+-.+++++.-|...|..+|+...+|.-.++..+++-|++..|.+-.|||++++++.+...+.. +..
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~a-------------rg~ 510 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLA-------------RGE 510 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccccc-------------ccc
Confidence 3445677889999999999999999999999999999999999999999999998885444321 111
Q ss_pred hHHhhhcCCCCCCCCCCCcc-CCCChhhh
Q 003219 214 SIRDAMRNPICTNCGGPAII-GDISLEEQ 241 (838)
Q Consensus 214 ~l~ea~~~~~C~~Cggp~~~-~~~~~~~q 241 (838)
..+---...-|-.|-..+.. +.++...|
T Consensus 511 ~~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 511 VYRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred cccCCCCcccceeeeeeeecchHHHHHHH
Confidence 22222233458888877654 44443333
No 123
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.81 E-value=19 Score=37.01 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=5.9
Q ss_pred hhhhhHhhhhhhHHHHHHHh
Q 003219 239 EEQHLRIENARLKDELDRVC 258 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~ 258 (838)
|+..|++|+.|||||+..++
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777765544
No 124
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=45.22 E-value=1.7e+02 Score=34.60 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHh-hhc-CCCCCHHHHHHHHHhhccccceeeecccchhhH-HHHHHHHhhhhhHHHHhHHHHHhhHh
Q 003219 138 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ-MKTQLERHENSLLRQENDKLRAENMS 214 (838)
Q Consensus 138 RtrfT~~Ql~~LE~~-F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK-~Kk~~~r~e~~~l~~ene~L~~en~~ 214 (838)
--++|.+....|.+. |.. ..+|-.+.-++.-++. +.=.+|+|.+ ++|++++.--..+......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 446888888888775 332 2356666555555544 2222344422 22222222223344444445556666
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhhhh
Q 003219 215 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (838)
Q Consensus 215 l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~~ 262 (838)
|+. +.++|..+|.-|-++|.++.++..
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHh
Confidence 554 567888999999999988776653
No 125
>smart00340 HALZ homeobox associated leucin zipper.
Probab=44.73 E-value=20 Score=28.89 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.1
Q ss_pred hhhHhhhhhhHHHHHHHhhh
Q 003219 241 QHLRIENARLKDELDRVCAL 260 (838)
Q Consensus 241 q~L~~ENa~Lk~el~r~~~~ 260 (838)
..|..||.||+.|++.++++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46888999999999998875
No 126
>smart00338 BRLZ basic region leucin zipper.
Probab=44.01 E-value=73 Score=27.14 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=25.8
Q ss_pred HhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003219 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (838)
Q Consensus 195 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (838)
+..-..|..+...|..+|..|+..+ .+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 4445556777777777777777633 35667777777665
No 127
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=40.80 E-value=50 Score=36.58 Aligned_cols=41 Identities=32% Similarity=0.385 Sum_probs=24.0
Q ss_pred hhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003219 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (838)
Q Consensus 196 ~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (838)
.+...+..+|+.|++++.++.+... +.+.|+.||.+||+.|
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELL 106 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 3444455666666666655554332 4556677777777755
No 128
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.88 E-value=37 Score=38.41 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=49.3
Q ss_pred cccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhh
Q 003219 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (838)
Q Consensus 181 WFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (838)
||=-=|.+.| +.+....+.++....|+.+.+.-++.--. ...+...+.++|+.+|..|+.||-+++.+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7654444443 44566778888888888877765554221 11244567779999999999999888877
Q ss_pred hhhccC
Q 003219 261 AGKFLG 266 (838)
Q Consensus 261 ~~~~~~ 266 (838)
..|.-+
T Consensus 122 f~k~k~ 127 (401)
T PF06785_consen 122 FMKTKG 127 (401)
T ss_pred HHHhcc
Confidence 665433
No 129
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.37 E-value=15 Score=35.55 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.5
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
-++.++.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999884
No 130
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=38.90 E-value=27 Score=39.66 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=25.7
Q ss_pred hhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003219 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (838)
Q Consensus 197 e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (838)
....+++||++|++||..|++.+. +.+.+..||++|++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 345566677777777776666553 34456678887776543
No 131
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.67 E-value=47 Score=31.72 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=13.0
Q ss_pred hhhhhHhhhhhhHHHHHHHh
Q 003219 239 EEQHLRIENARLKDELDRVC 258 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~ 258 (838)
+.++|++||..|++.|.+..
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777666554
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.57 E-value=1e+02 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.7
Q ss_pred HhhhhhHHHHhHHHHHhhHhHHh
Q 003219 195 RHENSLLRQENDKLRAENMSIRD 217 (838)
Q Consensus 195 r~e~~~l~~ene~L~~en~~l~e 217 (838)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777666665
No 133
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.45 E-value=68 Score=34.51 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHh
Q 003219 188 QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (838)
Q Consensus 188 K~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (838)
|.|-+...+++..|..+++.|.++-...++.++ +|+.||++|.++++++-
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhch
Confidence 334444455666666666666666666666443 67888888888776543
No 134
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=36.97 E-value=1.8e+02 Score=26.79 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhh
Q 003219 187 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (838)
Q Consensus 187 aK~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (838)
.+.++..-+++...|+.+.++=..-+..|..++....++-+..| ..+....+.|..|-|.|..|+.++...
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888877777777778888777655443333 345667888999999999888776543
No 135
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=36.25 E-value=40 Score=37.96 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=13.6
Q ss_pred hhhhHHHHhHHHHHhhHhHHhhh
Q 003219 197 ENSLLRQENDKLRAENMSIRDAM 219 (838)
Q Consensus 197 e~~~l~~ene~L~~en~~l~ea~ 219 (838)
|+..||+||++|++||..|+...
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHH
Confidence 45556666666666666665433
No 136
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.59 E-value=4.2e+02 Score=25.39 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=63.5
Q ss_pred eEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCe
Q 003219 404 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 483 (838)
Q Consensus 404 ~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~ 483 (838)
.+...+.++-+++.|.++|.+-.|.+ ..+++++.|.....+...+ +... ...|.+.-+-.|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTWR-----GLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEEE-----ecCCcEEEEEEEEEeecCCcE
Confidence 35557889999999999999999974 6677776322122122222 1111 112222223344444334445
Q ss_pred EEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccc---cccccchhhhccc
Q 003219 484 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDES---QVHQLYKPLIISG 551 (838)
Q Consensus 484 waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~---~vh~lyrpl~~Sg 551 (838)
|++. . ++. .. ...+ .-|++.++ +|+ ||+-.+++..-- ..+.++.+++...
T Consensus 78 ~~~~-~--~g~---~~--~~~~-------~~~~~~~~-gt~--vt~~~~~~~~~~~~~~l~~l~~~l~~~~ 130 (146)
T cd07824 78 LEVR-A--SGD---LE--GVGR-------WTLAPDGS-GTV--VRYDWEVRTTKPWMNLLAPLARPVFRWN 130 (146)
T ss_pred EEEE-E--EEe---ee--EEEE-------EEEEEcCC-CEE--EEEEEEEEcCHHHHHhhhHhhhhHHHHh
Confidence 5442 2 111 00 0011 23666544 599 999888887542 3555666665433
No 137
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.76 E-value=32 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45788999999999999999999999985
No 138
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=33.21 E-value=41 Score=31.07 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.0
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
...++-++.||+.||++|.|.....+|.-
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 34577889999999999999999999963
No 139
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.18 E-value=27 Score=32.17 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
..++-++.||..||++|.|-.+..+|.-
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3577789999999999999999999974
No 140
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.76 E-value=64 Score=31.07 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=13.8
Q ss_pred hhhhhHhhhhhhHHHHHHH
Q 003219 239 EEQHLRIENARLKDELDRV 257 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~ 257 (838)
+..+|++||..||+.|+++
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4557778888888877765
No 141
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.70 E-value=43 Score=31.76 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=22.1
Q ss_pred eeeecccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhh
Q 003219 177 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAM 219 (838)
Q Consensus 177 QVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~ 219 (838)
+...||++.=- .+-.+.+++...+++++++++++|..|++.+
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578865411 1111234445556666776666666655533
No 142
>PF15058 Speriolin_N: Speriolin N terminus
Probab=31.58 E-value=62 Score=34.08 Aligned_cols=39 Identities=36% Similarity=0.518 Sum_probs=27.8
Q ss_pred hhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhh
Q 003219 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (838)
Q Consensus 199 ~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (838)
.-++.++++|-.||.+||...+ |..||.+||.-|...+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 4456777777788888876543 77789888887665553
No 143
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=31.08 E-value=37 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.3
Q ss_pred EEeeecccChhHHHHhhhccccchhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356789999999999999999999996
No 144
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.52 E-value=1.2e+02 Score=35.50 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec
Q 003219 339 MFLELALAAMDELVKMAQTDEPLWIRS 365 (838)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~ 365 (838)
.|++ |..||.|+..+.+..---|.+-
T Consensus 398 kIle-ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 398 KILE-AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7789999888877766678764
No 145
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=30.38 E-value=30 Score=26.47 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhh
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 187 (838)
.+++.+...++..|... ..-.++|+.+|++...|+.|.+.-+.
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALK 52 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46788888888877433 24567899999999999888754433
No 146
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=30.36 E-value=13 Score=44.51 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHH-HHhhhcCCCCCHHHHHHHHHhhcc-------ccceeeecccchhhHHHHHH
Q 003219 136 KRYHRHTPQQIQEL-ESLFKECPHPDEKQRLELSKRLCL-------ETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 136 r~RtrfT~~Ql~~L-E~~F~~~~~Ps~~~R~eLA~~LgL-------s~rQVkvWFQNRRaK~Kk~~ 193 (838)
|++.+|-.+|..++ +.+|.+++++......+.-+++.+ +.+.|++||.|||.+.|+-+
T Consensus 693 ~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 693 KTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred HHHHHhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
Confidence 33334444444433 455778888887766666555543 45789999999999999644
No 147
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.20 E-value=1.2e+02 Score=26.84 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=13.8
Q ss_pred hhhhhhHhhhhhhHHHHHHH
Q 003219 238 LEEQHLRIENARLKDELDRV 257 (838)
Q Consensus 238 ~~~q~L~~ENa~Lk~el~r~ 257 (838)
.+..+|+.||..|++|++..
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35567777777777777654
No 148
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.16 E-value=28 Score=32.58 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.6
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
.++-++.||++||+||.|.....+|..
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999984
No 149
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.02 E-value=81 Score=34.70 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=13.6
Q ss_pred hhhhHhhhhhhHHHHHHHhhhhh
Q 003219 240 EQHLRIENARLKDELDRVCALAG 262 (838)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~~ 262 (838)
.+.|+.+...|++|+..++.+..
T Consensus 231 n~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 231 NEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666777766665543
No 150
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=29.89 E-value=25 Score=37.59 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=92.3
Q ss_pred cCCCCCceeccCCCCCCcEEEEE-ecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 003219 611 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 688 (838)
Q Consensus 611 ~s~~~~W~~l~~~~~~~dVrv~~-r~~~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 688 (838)
+-.+.+|..+ -. ..+++|.. |.-. .| | =...|- .-+. ++|..|+||+-|..-|.+||.+.--. ..+
T Consensus 25 ~~~~~~We~~-~~--k~~~~i~~q~~~~--~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~--e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELV-MD--KSTPSIWRQRRPK--TG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL--ETI 92 (219)
T ss_pred cCcccchhhh-cc--cCCceEEEEcccC--CC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh--eee
Confidence 5677899877 22 35677766 3321 23 3 234333 3457 99999999999999999999853111 111
Q ss_pred eecccCCCCCceEEEEEec--cCCCCCCceEEEEecccCC--CCcEEEEeecchhhhhhhhcCCCCCCccccCCccEEc-
Q 003219 689 AHIAKGQDHGNCVSLLRAS--AINANQSSMLILQETCTDA--AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIV- 763 (838)
Q Consensus 689 ~~ia~g~~~gn~vsllr~~--~~~~~~~~~liLQes~tD~--sgs~vVyAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~- 763 (838)
... ...||- |++-. -.-+-.+--+|++-.+.+. -.-+++-=-|+-+++ ---.+.--|-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~~ 164 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIRV 164 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEEc
Confidence 111 112332 23211 1111112334444433322 122222211222221 0000112334556788776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhHHHHHHHHHHhc
Q 003219 764 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 764 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 835 (838)
| ... ....||-.. +++-.+|...|..+-|.- +...+-..|.|+-.|+.
T Consensus 165 ~----~~~----------------~~~~~~~~~----~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 165 E----SRS----------------GDEQGCACE----YLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred c----ccc----------------CCCCccEEE----EEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2 111 011344333 344557888888877665 88888889999988875
No 151
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.75 E-value=35 Score=32.34 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.6
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3689999999999999999999999974
No 152
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.61 E-value=1.4e+02 Score=33.48 Aligned_cols=43 Identities=28% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003219 192 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (838)
Q Consensus 192 ~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (838)
+++|.+...+-.|.+.|..+|.+||+. .++|..|-.+||+=+.
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~q---------------------a~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQ---------------------ASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 445667777788888888888888873 3456666677776543
No 153
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.57 E-value=33 Score=32.87 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeeecccChhHHHHhhhccccchhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEW 676 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eW 676 (838)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 154
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.44 E-value=39 Score=31.43 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 155
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=28.96 E-value=58 Score=32.63 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
..+++.|.+.|+..++ . ....++|+.||++...|+.|-++.|.|.|+
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999988432 2 245689999999999999998765555553
No 156
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=27.93 E-value=55 Score=27.49 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhhhcCCC--CCHHHHHHHHHhhccccce
Q 003219 141 HTPQQIQELESLFKECPH--PDEKQRLELSKRLCLETRQ 177 (838)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~--Ps~~~R~eLA~~LgLs~rQ 177 (838)
+|+.|.+.|...|+..-| |-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 588999999999986653 6677788999999998854
No 157
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=27.57 E-value=44 Score=31.04 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 003219 649 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 649 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345688899999999999999999999984
No 158
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=27.20 E-value=38 Score=31.48 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.8
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
..|+-++.||+.||++|.|..+-.+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577889999999999999999999963
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.07 E-value=2.9e+02 Score=29.40 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=11.1
Q ss_pred HHHHhHHHHHhhHhHHhhh
Q 003219 201 LRQENDKLRAENMSIRDAM 219 (838)
Q Consensus 201 l~~ene~L~~en~~l~ea~ 219 (838)
..+....|+++|..+++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666644
No 160
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.76 E-value=46 Score=31.47 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.5
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
.+.-+..||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999997
No 161
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.25 E-value=45 Score=29.54 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.8
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 162
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.83 E-value=64 Score=33.38 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003219 221 NPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (838)
Q Consensus 221 ~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (838)
.-.||.||++...-+.+-..+.|...-.+|++++
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHh
Confidence 4569999998876654444445444444454444
No 163
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.74 E-value=1.2e+02 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhhhcC
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWDILSN 681 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~ 681 (838)
...|+-++.||++||+++.|.....+|.-...
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 34677789999999999999999999986443
No 164
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=25.12 E-value=1.7e+02 Score=29.31 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=29.9
Q ss_pred eEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEEEEEEeccCC
Q 003219 434 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (838)
Q Consensus 434 ~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~waVvDvSld~~ 494 (838)
..++|++.-..+..+|.--.+.+++....- .|..=.|-|+ ..+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~----~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLR----KKDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EEEEEEEEEE----EETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEE----EcCCCeEEEEEEEcce
Confidence 456666544444334455566777666654 3333334444 3889999999999976
No 165
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.12 E-value=96 Score=34.30 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=30.6
Q ss_pred HHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhh-hhhHhhhhhhHHHHHHHhhhh
Q 003219 202 RQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEE-QHLRIENARLKDELDRVCALA 261 (838)
Q Consensus 202 ~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~-q~L~~ENa~Lk~el~r~~~~~ 261 (838)
=.....+++||++|++++. +. +++......|++|.+|++.++
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~------------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELL------------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778899999998764 22 455555566999999998865
No 166
>PRK00118 putative DNA-binding protein; Validated
Probab=24.69 E-value=1.7e+02 Score=27.91 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
.+++.|...+...|.... ...++|+.+|+++..|+.|...-|.+.|+.
T Consensus 17 ~L~ekqRevl~L~y~eg~-----S~~EIAe~lGIS~~TV~r~L~RArkkLr~~ 64 (104)
T PRK00118 17 LLTEKQRNYMELYYLDDY-----SLGEIAEEFNVSRQAVYDNIKRTEKLLEDY 64 (104)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 356777777766665432 456799999999999999987666666543
No 167
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.63 E-value=36 Score=37.39 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=18.6
Q ss_pred hhhhhHhhhhhhHHHHHHHhhhhhhc
Q 003219 239 EEQHLRIENARLKDELDRVCALAGKF 264 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (838)
....|..||+.|+.+++++.....++
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888877666554
No 168
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=24.54 E-value=52 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecc
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 182 (838)
.+++.|...|...|... ..-.++|+.+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHH
Confidence 47889999999998333 346789999999998887654
No 169
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.65 E-value=1.7e+02 Score=34.77 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=6.1
Q ss_pred CCCHHHHHHHH
Q 003219 140 RHTPQQIQELE 150 (838)
Q Consensus 140 rfT~~Ql~~LE 150 (838)
.++++++..|+
T Consensus 41 ~ltpee~kalG 51 (472)
T TIGR03752 41 ELSPEELKALG 51 (472)
T ss_pred cCCcchhHhcC
Confidence 35666655554
No 170
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=23.48 E-value=1.6e+02 Score=30.23 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccc
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 184 (838)
..+|+++++++.+.-.++ |..-.+..||+++|+++.-|.+=.+-
T Consensus 84 y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~ 127 (164)
T PF12824_consen 84 YHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPA 127 (164)
T ss_pred ccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCC
Confidence 469999999999988776 67778999999999998777665543
No 171
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.38 E-value=93 Score=29.52 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=25.2
Q ss_pred cccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHh
Q 003219 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (838)
Q Consensus 181 WFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~e 217 (838)
|+..+..+.+....++++..++++|+.|+.|-..++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555555666666677777777777777777776664
No 172
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.81 E-value=1.7e+02 Score=34.80 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHH
Q 003219 186 RTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (838)
Q Consensus 186 RaK~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 256 (838)
..+.+-.+.+.....+++++++|+.|...+..... +..-..+.|..||.+|+++++.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455566667777777766553332221 1112233677888999888843
No 173
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.80 E-value=5.2e+02 Score=22.59 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=26.6
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEee
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (838)
...|...+..+-+.|.|.+.|..-+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 3456667889999999999999998884 4444454
No 174
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.78 E-value=2.4e+02 Score=24.86 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=10.3
Q ss_pred hHHHHhHHHHHhhHhHHh
Q 003219 200 LLRQENDKLRAENMSIRD 217 (838)
Q Consensus 200 ~l~~ene~L~~en~~l~e 217 (838)
.+-...+.|+.||..+++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~ 28 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRA 28 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455566666666665
No 175
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.52 E-value=1.7e+02 Score=34.17 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=10.1
Q ss_pred hhhhHHHHhHHHHHhhHhHHhh
Q 003219 197 ENSLLRQENDKLRAENMSIRDA 218 (838)
Q Consensus 197 e~~~l~~ene~L~~en~~l~ea 218 (838)
....+.+++..+++|-+.++..
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~ 49 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAK 49 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555544444443
No 176
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=22.18 E-value=4.3e+02 Score=24.36 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=55.5
Q ss_pred EechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecCCeEE
Q 003219 406 IINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWA 485 (838)
Q Consensus 406 ~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~g~wa 485 (838)
...+..+-+++.|.+.|.+.||.+ .-++||..... -|.+++.+.-...+ ..|+.|...+-.+.
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~----~~v~vl~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 64 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPV----KEVRVLERDGD--------GMRARWEVKFGGIK--RSWTSRVTEDPPER--- 64 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTE----EEEEEEEEECC--------EEEEEEEECTTTTC--EEEEEEEEEECTTT---
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCC----ceEEEEEeCCC--------eEEEEEEEecCCEE--EEEEEEEEEEEeee---
Confidence 345678889999999999999995 55667764431 24445555544444 34444444443333
Q ss_pred EEEEeccCCcCCCCCCCccceeecCCceeEeecC--CCceeeeEEEEEeeeeccc
Q 003219 486 VVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKLQVTWVEHAEYDES 538 (838)
Q Consensus 486 VvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~sk~~VtwVeH~e~d~~ 538 (838)
|.+....+... .+...|+ +++.. +|++. +++.-.++++..
T Consensus 65 ~~~~~~~g~~~-----~~~g~W~------~~~~~~~~~g~~--~~v~~~~~~~~~ 106 (130)
T PF03364_consen 65 IRFEQISGPFK-----SFEGSWR------FEPLGGNEGGTR--TRVTYDYEVDPP 106 (130)
T ss_dssp EEEESSETTEE-----EEEEEEE------EEEETTECCEEE--EEEEEEEEEETS
T ss_pred eeeeecCCCch-----hcEEEEE------EEECCCCcCCCE--EEEEEEEEEecC
Confidence 32332222110 1122222 23333 35777 777777777544
No 177
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.89 E-value=2.3e+02 Score=26.22 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchh
Q 003219 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (838)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (838)
+..|+.+++..|+.... .+.+|++-.+|+-+++...
T Consensus 36 ~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 36 YRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred ceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 44699999999966532 3456777777777776554
No 178
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.45 E-value=72 Score=29.43 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.7
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
.+.-++.||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46678899999999999999999997
No 179
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.59 E-value=64 Score=30.76 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.3
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988887776
No 180
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.54 E-value=1.1e+02 Score=36.81 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=17.0
Q ss_pred hhHHHHhHHHHHhhHhHHhhhc
Q 003219 199 SLLRQENDKLRAENMSIRDAMR 220 (838)
Q Consensus 199 ~~l~~ene~L~~en~~l~ea~~ 220 (838)
+.+-+||+.|++||..||+.+.
T Consensus 312 q~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 312 QALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 4466788888888888888765
No 181
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.42 E-value=2.5e+02 Score=30.16 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=30.7
Q ss_pred HhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhhhh
Q 003219 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (838)
Q Consensus 195 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (838)
+.-..+.+...+++|.|-.++.+ -+-..|+.||..||.||+|++.-.
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777776554433 133468889999999999887544
No 182
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=20.35 E-value=1e+02 Score=20.78 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeec
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFW 181 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvW 181 (838)
.++.++...+...|.... ...++++.++++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~~-----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAGE-----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCCCHHHHHHh
Confidence 356666666666665332 4567889999988777666
Done!