Query 003219
Match_columns 838
No_of_seqs 417 out of 1735
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 3.7E-19 1.3E-23 182.7 19.5 201 337-570 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 1.2E-17 4E-22 150.8 5.6 77 130-206 13-89 (93)
3 2dmt_A Homeobox protein BARH-l 99.7 2.1E-17 7E-22 144.9 5.6 64 130-193 13-76 (80)
4 2kt0_A Nanog, homeobox protein 99.7 1.4E-17 4.8E-22 146.9 4.4 64 130-193 18-81 (84)
5 2da3_A Alpha-fetoprotein enhan 99.7 1.9E-17 6.6E-22 144.5 4.3 63 131-193 14-76 (80)
6 1nk2_P Homeobox protein VND; h 99.7 7.2E-17 2.5E-21 140.4 6.1 66 131-196 6-71 (77)
7 2cue_A Paired box protein PAX6 99.7 8.2E-17 2.8E-21 141.1 6.4 65 132-196 5-69 (80)
8 2dmq_A LIM/homeobox protein LH 99.7 5.5E-17 1.9E-21 141.9 5.1 66 132-197 5-70 (80)
9 1wh5_A ZF-HD homeobox family p 99.6 4.1E-17 1.4E-21 143.5 3.9 61 131-191 14-78 (80)
10 2dms_A Homeobox protein OTX2; 99.6 5.6E-17 1.9E-21 142.0 3.6 64 132-195 5-68 (80)
11 2dmu_A Homeobox protein goosec 99.6 8.4E-17 2.9E-21 137.4 4.3 62 132-193 5-66 (70)
12 1fjl_A Paired protein; DNA-bin 99.6 1.1E-16 3.8E-21 140.5 5.1 64 131-194 15-78 (81)
13 1puf_A HOX-1.7, homeobox prote 99.6 2.1E-16 7E-21 137.6 6.7 64 132-195 11-74 (77)
14 2cra_A Homeobox protein HOX-B1 99.6 7.9E-17 2.7E-21 137.6 3.8 62 132-193 5-66 (70)
15 2h1k_A IPF-1, pancreatic and d 99.6 9.2E-17 3.2E-21 134.5 4.0 60 133-192 2-61 (63)
16 2e1o_A Homeobox protein PRH; D 99.6 1.4E-16 4.9E-21 136.0 5.2 61 133-193 6-66 (70)
17 1wh7_A ZF-HD homeobox family p 99.6 7.1E-17 2.4E-21 142.1 3.4 60 131-191 14-78 (80)
18 2vi6_A Homeobox protein nanog; 99.6 4.5E-17 1.5E-21 135.9 1.9 60 133-192 2-61 (62)
19 2da2_A Alpha-fetoprotein enhan 99.6 6.5E-17 2.2E-21 138.0 2.7 63 131-193 4-66 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.6 1.8E-16 6E-21 134.9 4.6 63 134-196 2-64 (68)
21 2djn_A Homeobox protein DLX-5; 99.6 1.3E-16 4.6E-21 136.2 3.5 62 131-192 4-65 (70)
22 2hdd_A Protein (engrailed home 99.6 1.4E-16 4.9E-21 132.4 3.4 58 134-191 3-60 (61)
23 1ig7_A Homeotic protein MSX-1; 99.6 2.5E-16 8.5E-21 129.5 4.4 57 135-191 1-57 (58)
24 2da1_A Alpha-fetoprotein enhan 99.6 1.8E-16 6.3E-21 135.2 3.4 62 132-193 5-66 (70)
25 1yz8_P Pituitary homeobox 2; D 99.6 1.1E-16 3.9E-21 135.9 2.0 63 133-195 2-64 (68)
26 1ahd_P Antennapedia protein mu 99.6 1.7E-16 5.9E-21 135.0 2.9 61 134-194 2-62 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.6 1.8E-16 6.1E-21 134.8 2.6 62 134-195 2-63 (68)
28 1b8i_A Ultrabithorax, protein 99.6 2E-16 6.8E-21 139.1 2.7 62 132-193 18-79 (81)
29 1bw5_A ISL-1HD, insulin gene e 99.6 1.7E-16 5.8E-21 134.0 2.1 60 133-192 2-61 (66)
30 2da4_A Hypothetical protein DK 99.6 2.8E-16 9.5E-21 137.6 3.4 62 132-193 6-71 (80)
31 1jgg_A Segmentation protein EV 99.6 3.3E-16 1.1E-20 129.8 3.6 58 135-192 2-59 (60)
32 2l7z_A Homeobox protein HOX-A1 99.6 4.5E-16 1.5E-20 134.2 4.5 62 132-193 5-66 (73)
33 3nar_A ZHX1, zinc fingers and 99.6 3.4E-16 1.2E-20 141.8 3.5 65 132-196 23-87 (96)
34 2r5y_A Homeotic protein sex co 99.6 2.9E-16 1E-20 139.9 2.5 62 132-193 26-87 (88)
35 2m0c_A Homeobox protein arista 99.6 3.8E-16 1.3E-20 134.6 3.1 64 131-194 6-69 (75)
36 3rkq_A Homeobox protein NKX-2. 99.6 5.7E-16 1.9E-20 126.8 3.8 57 134-190 2-58 (58)
37 2da5_A Zinc fingers and homeob 99.6 4.4E-16 1.5E-20 135.0 3.1 60 136-195 9-68 (75)
38 1uhs_A HOP, homeodomain only p 99.6 8.8E-16 3E-20 131.8 4.9 59 135-193 2-61 (72)
39 1akh_A Protein (mating-type pr 99.6 4.5E-16 1.5E-20 129.2 2.8 59 132-190 3-61 (61)
40 2hi3_A Homeodomain-only protei 99.6 8.8E-16 3E-20 132.3 4.7 59 135-193 3-62 (73)
41 3a02_A Homeobox protein arista 99.6 5E-16 1.7E-20 128.7 3.0 57 137-193 2-58 (60)
42 2k40_A Homeobox expressed in E 99.6 4.3E-16 1.5E-20 131.9 2.2 60 135-194 2-61 (67)
43 3a03_A T-cell leukemia homeobo 99.6 8.1E-16 2.8E-20 126.0 3.7 54 139-192 2-55 (56)
44 1b72_A Protein (homeobox prote 99.6 7.9E-16 2.7E-20 139.6 4.0 63 132-194 32-94 (97)
45 2cuf_A FLJ21616 protein; homeo 99.6 1.3E-15 4.4E-20 137.7 5.2 65 131-195 4-83 (95)
46 1x2n_A Homeobox protein pknox1 99.6 1.4E-15 4.9E-20 130.8 4.1 63 132-194 5-70 (73)
47 2ecc_A Homeobox and leucine zi 99.5 1.6E-15 5.6E-20 132.1 4.1 59 137-195 6-64 (76)
48 2ly9_A Zinc fingers and homeob 99.5 1.5E-15 5.3E-20 130.8 3.2 61 134-194 6-66 (74)
49 2dn0_A Zinc fingers and homeob 99.5 1E-15 3.5E-20 132.9 1.8 59 135-193 9-67 (76)
50 2ecb_A Zinc fingers and homeob 99.5 1.1E-15 3.9E-20 137.0 1.6 56 139-194 16-71 (89)
51 2dmn_A Homeobox protein TGIF2L 99.5 3.4E-15 1.2E-19 131.9 4.6 64 132-195 5-71 (83)
52 1puf_B PRE-B-cell leukemia tra 99.5 2.8E-15 9.7E-20 128.9 3.8 61 135-195 2-65 (73)
53 1e3o_C Octamer-binding transcr 99.5 1.6E-15 5.6E-20 149.4 2.1 62 131-192 98-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.5 4.5E-15 1.5E-19 131.7 4.4 61 135-195 2-65 (87)
55 2xsd_C POU domain, class 3, tr 99.5 1.7E-15 6E-20 149.9 1.5 64 131-194 96-159 (164)
56 2dmp_A Zinc fingers and homeob 99.5 4.4E-15 1.5E-19 133.0 3.5 57 138-194 17-73 (89)
57 2cqx_A LAG1 longevity assuranc 99.5 2.2E-15 7.4E-20 130.0 1.1 58 135-192 9-67 (72)
58 2da6_A Hepatocyte nuclear fact 99.5 1.2E-14 4.1E-19 133.2 5.9 65 131-195 3-88 (102)
59 1au7_A Protein PIT-1, GHF-1; c 99.5 2.8E-15 9.5E-20 145.8 1.8 62 131-192 84-145 (146)
60 1du6_A PBX1, homeobox protein 99.5 3.6E-15 1.2E-19 125.0 2.2 58 134-191 3-63 (64)
61 1k61_A Mating-type protein alp 99.5 5.8E-15 2E-19 122.2 3.3 55 137-191 1-58 (60)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 1.1E-14 3.8E-19 129.5 4.1 58 133-190 26-86 (87)
63 1le8_B Mating-type protein alp 99.5 5.7E-15 1.9E-19 130.4 2.0 59 135-193 3-64 (83)
64 1wi3_A DNA-binding protein SAT 99.5 1.6E-14 5.5E-19 122.5 4.2 60 131-190 4-64 (71)
65 2l9r_A Homeobox protein NKX-3. 99.5 3.8E-15 1.3E-19 127.6 0.2 57 139-195 9-65 (69)
66 3d1n_I POU domain, class 6, tr 99.5 1.4E-14 4.7E-19 141.4 4.1 61 131-191 90-150 (151)
67 1lfb_A Liver transcription fac 99.5 8E-15 2.7E-19 134.0 1.3 64 131-194 6-90 (99)
68 3nau_A Zinc fingers and homeob 99.5 1.9E-14 6.4E-19 121.9 3.4 53 141-193 11-63 (66)
69 1x2m_A LAG1 longevity assuranc 99.4 1.2E-14 4.1E-19 122.8 1.3 49 143-191 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 4E-14 1.4E-18 138.9 3.7 61 132-192 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 3.5E-14 1.2E-18 119.8 2.3 52 140-191 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 5.5E-14 1.9E-18 138.6 2.1 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 1.7E-13 5.8E-18 116.5 1.9 58 140-197 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 7E-13 2.4E-17 134.6 0.6 62 130-191 111-193 (194)
75 1em2_A MLN64 protein; beta bar 99.2 7.8E-10 2.7E-14 113.3 18.3 200 337-570 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.2 3.6E-10 1.2E-14 115.4 15.7 193 340-568 12-213 (221)
77 2lk2_A Homeobox protein TGIF1; 99.1 2E-11 6.7E-16 109.4 3.9 59 139-197 10-71 (89)
78 2pso_A STAR-related lipid tran 99.1 3.8E-10 1.3E-14 117.4 14.1 192 343-568 33-226 (237)
79 2h8r_A Hepatocyte nuclear fact 99.1 2.4E-11 8.3E-16 125.0 3.0 61 130-190 138-219 (221)
80 2da7_A Zinc finger homeobox pr 99.0 5.3E-11 1.8E-15 101.6 2.6 46 143-188 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.0 6.2E-11 2.1E-15 129.8 -0.0 56 135-190 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 98.9 1E-08 3.6E-13 103.2 15.5 152 397-570 52-210 (214)
83 1jss_A Stard4, cholesterol-reg 98.9 2.4E-08 8.1E-13 102.3 15.0 190 340-568 26-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 1.1E-07 3.9E-12 100.3 12.5 128 400-543 91-222 (258)
85 3qsz_A STAR-related lipid tran 98.5 1.3E-06 4.4E-11 86.5 15.1 152 398-569 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.4 1.7E-08 5.8E-13 76.3 -1.2 21 176-196 1-21 (37)
87 2e3n_A Lipid-transfer protein 98.3 6.8E-06 2.3E-10 85.5 13.5 200 340-570 24-247 (255)
88 2r55_A STAR-related lipid tran 97.4 0.0065 2.2E-07 61.8 18.7 198 589-835 19-227 (231)
89 3qsz_A STAR-related lipid tran 97.0 0.015 5.2E-07 57.1 15.8 171 615-835 3-178 (189)
90 1jss_A Stard4, cholesterol-reg 96.6 0.035 1.2E-06 56.4 14.9 191 594-835 26-222 (224)
91 3p0l_A Steroidogenic acute reg 96.4 0.083 2.9E-06 53.4 16.6 192 593-835 11-213 (221)
92 1ln1_A PC-TP, phosphatidylchol 96.3 0.084 2.9E-06 52.6 15.5 172 613-835 26-208 (214)
93 1em2_A MLN64 protein; beta bar 96.2 0.14 4.6E-06 52.0 16.6 196 592-835 21-224 (229)
94 2pso_A STAR-related lipid tran 96.1 0.12 4.3E-06 53.2 15.8 175 613-836 48-227 (237)
95 2d4r_A Hypothetical protein TT 95.2 0.25 8.4E-06 44.4 12.5 139 402-570 7-145 (147)
96 3fo5_A Thioesterase, adipose a 94.7 0.13 4.5E-06 54.1 10.4 181 556-766 10-202 (258)
97 2e3n_A Lipid-transfer protein 90.3 3.4 0.00012 42.3 13.7 174 594-805 28-218 (255)
98 3tfz_A Cyclase; helix-GRIP, BE 90.1 4.4 0.00015 39.0 13.5 145 400-572 8-162 (172)
99 3tl1_A WHIE ORF VI, polyketide 90.1 5.6 0.00019 38.4 14.2 142 400-572 6-149 (159)
100 1t17_A Conserved hypothetical 88.8 2.1 7.1E-05 39.8 9.8 140 401-570 6-145 (148)
101 3tvq_A Multifunctional cyclase 88.0 9.2 0.00031 37.2 14.2 145 400-573 6-150 (169)
102 2jn6_A Protein CGL2762, transp 84.1 0.32 1.1E-05 42.7 1.3 42 139-184 4-46 (97)
103 2ys9_A Homeobox and leucine zi 83.6 0.33 1.1E-05 41.5 1.1 39 145-183 17-55 (70)
104 3p9v_A Uncharacterized protein 78.7 23 0.00078 33.6 12.4 139 401-567 11-149 (161)
105 2jee_A YIIU; FTSZ, septum, coi 68.9 4.6 0.00016 35.5 4.1 24 240-263 50-77 (81)
106 2pcs_A Conserved protein; stru 68.1 75 0.0026 29.3 15.3 118 402-548 8-127 (162)
107 1ci6_A Transcription factor AT 66.4 11 0.00037 31.3 5.8 41 194-255 21-61 (63)
108 2j5u_A MREC protein; bacterial 65.3 2.3 7.8E-05 44.6 1.8 16 239-254 44-59 (255)
109 2wt7_B Transcription factor MA 64.6 12 0.00042 33.4 6.1 68 172-260 17-84 (90)
110 1hjb_A Ccaat/enhancer binding 59.3 14 0.00046 32.9 5.4 19 199-217 39-57 (87)
111 1t2k_D Cyclic-AMP-dependent tr 56.4 24 0.00083 28.8 6.2 40 194-254 20-59 (61)
112 1jnm_A Proto-oncogene C-JUN; B 50.4 17 0.0006 29.8 4.4 23 195-217 21-43 (62)
113 3ra3_B P2F; coiled coil domain 43.8 12 0.00042 25.7 1.9 18 241-258 3-20 (28)
114 3a5t_A Transcription factor MA 43.7 4.8 0.00017 37.1 -0.0 66 172-258 27-92 (107)
115 1l8d_A DNA double-strand break 43.6 20 0.00069 32.2 4.1 12 221-232 47-58 (112)
116 2qpv_A Uncharacterized protein 42.1 16 0.00055 35.2 3.4 30 649-678 28-57 (156)
117 1gu4_A CAAT/enhancer binding p 41.3 35 0.0012 29.7 5.0 16 201-216 41-56 (78)
118 1gd2_E Transcription factor PA 40.7 49 0.0017 28.2 5.7 13 242-254 54-66 (70)
119 2wt7_A Proto-oncogene protein 39.5 60 0.002 26.7 6.0 26 194-219 21-46 (63)
120 1hlv_A CENP-B, major centromer 37.6 21 0.00073 32.3 3.3 49 137-188 4-52 (131)
121 2elh_A CG11849-PA, LD40883P; s 37.5 19 0.00064 30.9 2.8 43 135-182 17-59 (87)
122 2d4r_A Hypothetical protein TT 36.5 16 0.00054 32.3 2.2 29 650-678 4-32 (147)
123 2glo_A Brinker CG9653-PA; prot 34.1 15 0.00052 29.1 1.5 44 139-183 4-47 (59)
124 3hug_A RNA polymerase sigma fa 32.8 27 0.00093 29.9 3.0 49 140-193 37-85 (92)
125 2pcs_A Conserved protein; stru 32.5 17 0.00057 33.8 1.7 28 650-677 5-32 (162)
126 2ns9_A Hypothetical protein AP 31.7 19 0.00066 32.9 2.0 29 649-677 14-42 (157)
127 3p51_A Uncharacterized protein 31.6 1.9E+02 0.0066 27.4 9.2 112 401-537 6-118 (160)
128 1jko_C HIN recombinase, DNA-in 31.4 14 0.00047 27.4 0.8 42 141-187 6-47 (52)
129 3he5_B Synzip2; heterodimeric 30.9 1E+02 0.0035 23.9 5.5 22 239-260 25-46 (52)
130 2rn7_A IS629 ORFA; helix, all 28.8 1 3.5E-05 40.1 -7.1 44 139-182 5-51 (108)
131 3m91_A Proteasome-associated A 28.8 88 0.003 25.1 5.0 38 200-258 13-50 (51)
132 3ggn_A Uncharacterized protein 28.3 30 0.001 32.3 2.8 30 649-678 5-34 (155)
133 2leq_A Uncharacterized protein 27.7 36 0.0012 30.4 3.1 28 649-676 6-33 (146)
134 1t17_A Conserved hypothetical 27.6 28 0.00096 32.0 2.4 28 651-678 5-32 (148)
135 1s7o_A Hypothetical UPF0122 pr 26.1 70 0.0024 29.0 4.7 49 140-193 22-70 (113)
136 3q6a_A Uncharacterized protein 25.6 39 0.0013 30.5 2.9 27 651-677 4-30 (135)
137 3m48_A General control protein 25.2 51 0.0017 24.2 2.7 22 240-261 9-30 (33)
138 3m9b_A Proteasome-associated A 25.0 51 0.0017 34.6 3.9 19 241-259 78-96 (251)
139 1x53_A Activator of 90 kDa hea 24.8 39 0.0013 31.0 2.8 28 650-677 13-40 (145)
140 1xsv_A Hypothetical UPF0122 pr 23.8 82 0.0028 28.4 4.7 50 140-194 25-74 (113)
141 2le1_A Uncharacterized protein 23.8 3.3E+02 0.011 24.6 9.0 128 400-568 5-142 (151)
142 3s9g_A Protein hexim1; cyclin 23.5 23 0.00078 32.1 0.8 56 191-253 32-87 (104)
143 2ns9_A Hypothetical protein AP 23.0 4.1E+02 0.014 23.7 12.8 27 403-429 19-45 (157)
144 3tfz_A Cyclase; helix-GRIP, BE 22.3 49 0.0017 31.5 3.0 29 649-677 6-34 (172)
145 1tc3_C Protein (TC3 transposas 22.3 38 0.0013 24.4 1.8 40 140-184 5-44 (51)
146 3ggn_A Uncharacterized protein 22.0 4.6E+02 0.016 24.0 12.9 116 401-547 8-124 (155)
147 3mzy_A RNA polymerase sigma-H 21.2 62 0.0021 29.4 3.4 48 140-193 109-156 (164)
148 1xn6_A Hypothetical protein BC 20.8 39 0.0013 30.7 1.9 28 650-677 10-37 (143)
149 1z94_A Conserved hypothetical 20.6 38 0.0013 30.4 1.8 26 652-677 7-32 (147)
150 2kew_A Uncharacterized protein 20.3 41 0.0014 31.2 2.0 28 650-677 12-39 (152)
151 3oja_A Leucine-rich immune mol 20.1 1.6E+02 0.0055 32.6 7.1 23 238-260 442-464 (487)
152 2rgt_A Fusion of LIM/homeobox 20.1 4.2 0.00014 39.4 -5.2 29 133-161 135-163 (169)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=3.7e-19 Score=182.74 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 003219 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (838)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~l 416 (838)
++.++++|++||+||+++++.. ..|....+.. +.+.|.+.. .+....+-|..++|.+++.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 7899999999999999999754 7898754321 233332221 1233578899999999999999999
Q ss_pred cC-----hhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeee-eeeccccccccceeeEEeeeeeecCCeEEEEEEe
Q 003219 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA-ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 490 (838)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~a-El~v~SPLVp~Re~~flRyckq~~~g~waVvDvS 490 (838)
|+ +.+|-+.|. .+++++.|+. .-.++|. ....++++|+.|||.++||+++.++|.|+|+.+|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~--------~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD--------TLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS--------SEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC--------CEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 889987744 5788888752 1234442 2234567999999999999999999999999999
Q ss_pred ccCCcCCCCCCCccceeecCCceeEeecC--CCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 491 ld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
++.-. .|..+.++|++.+++||+||+++ +|.|+ |||+.|++..-+ +| +.++++.++.+..+|++.|+++|+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~--vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTN--LVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEE--EEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEE--EEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHH
Confidence 98432 22223589999999999999998 78999 999999998875 55 678999999999999999999998
Q ss_pred HH
Q 003219 569 CL 570 (838)
Q Consensus 569 rl 570 (838)
.+
T Consensus 228 ~~ 229 (231)
T 2r55_A 228 QF 229 (231)
T ss_dssp GG
T ss_pred Hh
Confidence 53
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=1.2e-17 Score=150.75 Aligned_cols=77 Identities=32% Similarity=0.428 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhhhhhHHHHhH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene 206 (838)
..+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+....++.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999887766666555544
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=144.90 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
..+++||.|+.||.+|+..||..|..++||+..+|.+||++|+|+++||++||||||+|+||..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3456788899999999999999999999999999999999999999999999999999999743
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=146.95 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
..+++||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999754
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-17 Score=144.50 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
..++||.|++||.+|+..||..|..++||+..+|.+||++|||+++||++||||||+|+||++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356688899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.65 E-value=7.2e-17 Score=140.45 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
.++++|.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+++...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 446678889999999999999999999999999999999999999999999999999999876554
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=8.2e-17 Score=141.09 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
+++||.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45678889999999999999999999999999999999999999999999999999999876543
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-17 Score=141.85 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
.++||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999999999999999999999999999998765543
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=4.1e-17 Score=143.49 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
.+++||+|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567788999999999999999999 999999999999999999999999999999999874
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=5.6e-17 Score=142.04 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
.++||+|++||.+|+..||..|+.++||+..+|.+||.+++|+++||++||||||+|+|++++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4567889999999999999999999999999999999999999999999999999999986543
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.4e-17 Score=137.39 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+.||.|++||.+|+..||..|+.++||+..++.+||+++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34677889999999999999999999999999999999999999999999999999999754
No 12
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.63 E-value=1.1e-16 Score=140.46 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.+++||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998653
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.63 E-value=2.1e-16 Score=137.58 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
++.+++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=7.9e-17 Score=137.65 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45678889999999999999999999999999999999999999999999999999999743
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.63 E-value=9.2e-17 Score=134.53 Aligned_cols=60 Identities=35% Similarity=0.467 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
++||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357788999999999999999999999999999999999999999999999999999975
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.4e-16 Score=136.03 Aligned_cols=61 Identities=36% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
+.+++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567788999999999999999999999999999999999999999999999999999754
No 17
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=7.1e-17 Score=142.10 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
.+++||.|+.||.+|+..|| .|.+ ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.63 E-value=4.5e-17 Score=135.92 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
+++|.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467788999999999999999999999999999999999999999999999999999974
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-17 Score=137.96 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+++|++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999743
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.8e-16 Score=134.86 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
+||.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467889999999999999999999999999999999999999999999999999999876654
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=136.23 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
.++.||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 34567888999999999999999999999999999999999999999999999999999964
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.61 E-value=1.4e-16 Score=132.42 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999999996
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=2.5e-16 Score=129.50 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
||+|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999996
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-16 Score=135.16 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.++||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678889999999999999999999999999999999999999999999999999999754
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.61 E-value=1.1e-16 Score=135.94 Aligned_cols=63 Identities=30% Similarity=0.516 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
++||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 567888999999999999999999999999999999999999999999999999999986543
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=1.7e-16 Score=134.99 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
+||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999999998654
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.60 E-value=1.8e-16 Score=134.81 Aligned_cols=62 Identities=37% Similarity=0.500 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
+||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57788999999999999999999999999999999999999999999999999999986543
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.60 E-value=2e-16 Score=139.11 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
+++||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45677889999999999999999999999999999999999999999999999999999754
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=1.7e-16 Score=134.00 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
++||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467888999999999999999999999999999999999999999999999999999964
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-16 Score=137.62 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.++||.|+.||.+|+..||..|+.+ +||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567888999999999999999999 9999999999999999999999999999999999743
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.59 E-value=3.3e-16 Score=129.80 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999974
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.59 E-value=4.5e-16 Score=134.22 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+.||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35678889999999999999999999999999999999999999999999999999999754
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.59 E-value=3.4e-16 Score=141.84 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHh
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
...+|+|++||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+|+++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34567789999999999999999999999999999999999999999999999999999865443
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.58 E-value=2.9e-16 Score=139.94 Aligned_cols=62 Identities=34% Similarity=0.476 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35677889999999999999999999999999999999999999999999999999999753
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-16 Score=134.57 Aligned_cols=64 Identities=30% Similarity=0.508 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.+++++.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999997543
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.58 E-value=5.7e-16 Score=126.82 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 466789999999999999999999999999999999999999999999999999986
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-16 Score=134.99 Aligned_cols=60 Identities=25% Similarity=0.557 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345679999999999999999999999999999999999999999999999999986543
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=8.8e-16 Score=131.84 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.++|++||.+|+..||..|+. ++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456788999999999999996 99999999999999999999999999999999999855
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.58 E-value=4.5e-16 Score=129.23 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
.+++++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678889999999999999999999999999999999999999999999999999986
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=8.8e-16 Score=132.30 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999995 99999999999999999999999999999999999865
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.57 E-value=5e-16 Score=128.71 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468899999999999999999999999999999999999999999999999999764
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.57 E-value=4.3e-16 Score=131.89 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997543
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.57 E-value=8.1e-16 Score=125.97 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=7.9e-16 Score=139.61 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
++.+++|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356778899999999999999999999999999999999999999999999999999998654
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.3e-15 Score=137.73 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------cccceeeecccchhhHHHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------Ls~rQVkvWFQNRRaK~Kk~~~r 195 (838)
.+++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346788899999999999999999999999999999999999 99999999999999999987654
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.4e-15 Score=130.77 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
++.|++|++|+.+|+..||.+|.. ++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456778889999999999999976 999999999999999999999999999999999997543
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.6e-15 Score=132.14 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
+|.+||.+|+.+||+.|..++||+..+|++||+++||+++||++||||||+|+|+.+.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999976543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-15 Score=130.77 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.++.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4677889999999999999999999999999999999999999999999999999997543
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1e-15 Score=132.86 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
++.|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34478899999999999999999999999999999999999999999999999999754
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.1e-15 Score=137.05 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.+||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999996443
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-15 Score=131.94 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
.++||+|++|+.+|+..||.+|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456778899999999999999987 5999999999999999999999999999999999976544
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.53 E-value=2.8e-15 Score=128.89 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
||+|++|+.+|+..||.+| ..++||+..+|.+||.++||+++||++||||||+|+|++..+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6678899999999999999 899999999999999999999999999999999999976544
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.52 E-value=1.6e-15 Score=149.39 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
.+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999964
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.52 E-value=4.5e-15 Score=131.69 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
||+|++|+.+|+..||.+| ..++||+..+|.+||+++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999986544
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.51 E-value=1.7e-15 Score=149.94 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.+++||+|++||..|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+.+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567788999999999999999999999999999999999999999999999999999997654
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-15 Score=132.95 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
+.+||.+|+.+||..|..++||+..+|++||+++||+++||++||||||+|+|++.+
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345999999999999999999999999999999999999999999999999986543
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=2.2e-15 Score=129.98 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
.+++.+++.+|+.+||..| +.++||+..+|.+||+++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4455678899999999999 999999999999999999999999999999999999953
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=133.20 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh---------------------ccccceeeecccchhhHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L---------------------gLs~rQVkvWFQNRRaK~ 189 (838)
.+++||.|+.|++.|+.+||..|+.++||+..+|++||++| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 689999999999999999
Q ss_pred HHHHHH
Q 003219 190 KTQLER 195 (838)
Q Consensus 190 Kk~~~r 195 (838)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986543
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.50 E-value=2.8e-15 Score=145.77 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
.+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999974
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=3.6e-15 Score=124.99 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
.+++|++|+.+|+..||.+| ..++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 99999999999999999999999999999999999985
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.50 E-value=5.8e-15 Score=122.20 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
+|++|+.+|+..||..|.. ++||+..++.+||+++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3578999999999999999 999999999999999999999999999999999986
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.48 E-value=1.1e-14 Score=129.47 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
+++|+|++|+.+|+..||.+|.. ++||+..+|.+||+++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999 99999999999999999999999999999999987
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.48 E-value=5.7e-15 Score=130.42 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
+++|++|+.+|+..||.+|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455677999999999999999 99999999999999999999999999999999999753
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=1.6e-14 Score=122.53 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
.+++||.|+.|+.+|+..|+..|+. ++||+...|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999997654
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.47 E-value=3.8e-15 Score=127.62 Aligned_cols=57 Identities=35% Similarity=0.454 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHH
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (838)
..+|..|+.+||..|+.++||+..+|.+||+++||+++||++||||||+|+||++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 357899999999999999999999999999999999999999999999999976543
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=141.39 Aligned_cols=61 Identities=33% Similarity=0.633 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
.+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467788999999999999999999999999999999999999999999999999999985
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.46 E-value=8e-15 Score=133.98 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHh------------------hc---cccceeeecccchhhHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 189 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 189 (838)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.. || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566788899999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHH
Q 003219 190 KTQLE 194 (838)
Q Consensus 190 Kk~~~ 194 (838)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86554
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.9e-14 Score=121.92 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 37899999999999999999999999999999999999999999999999743
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=1.2e-14 Score=122.77 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.2
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 143 ~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
+.|+.+||+.| ..++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67999999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.43 E-value=4e-14 Score=138.88 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHH
Q 003219 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (838)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (838)
+++||+|++|+.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567788999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.5e-14 Score=119.80 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHH
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (838)
..+.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999999874
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.39 E-value=5.5e-14 Score=138.65 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+++||+|+.||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 446678899999999999999999999999999999999999999999999999999999644
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.7e-13 Score=116.48 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
+|+.+|+..||.+|. .++||+..+|.+||.++||+++||++||||||+|+|+...+++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999997665543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.25 E-value=7e-13 Score=134.60 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------------cccceeeecccchhhH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (838)
..+++||.|+.|++.|+..||+.|..++||+..+|++||..|+ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456678889999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 003219 189 MKT 191 (838)
Q Consensus 189 ~Kk 191 (838)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 885
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.17 E-value=7.8e-10 Score=113.34 Aligned_cols=200 Identities=11% Similarity=0.137 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-
Q 003219 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 413 (838)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LV- 413 (838)
....++++++|+++++++... .--|-...+ .+ ..| |.+..+. .|. .-|..++|...+..|.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 356789999999999999863 347976532 23 111 3333321 121 2388899999999998
Q ss_pred HHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecc--ccccccceeeEEeeeeeecCCeEEEEEEec
Q 003219 414 ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (838)
Q Consensus 414 e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~--SPLVp~Re~~flRyckq~~~g~waVvDvSl 491 (838)
++|+|.+...+-.+. +..++.++.|.. ++ .+ +-++..+ .++++.|||.++|+++.. ++.|+||-.|+
T Consensus 84 ~~~~d~~~r~~Wd~~-~~~~~vle~~~~-------~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 84 EVILQPERMVLWNKT-VTACQILQRVED-------NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp HTTTCHHHHTTTCTT-EEEEEEEEEETT-------TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHHhCccchhhcccc-cceEEEEEecCC-------Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 777776533333333 234666666542 12 23 4456655 678999999999999997 56699999999
Q ss_pred cCCcCCCCCCCccceeecCCceeEeecC--CCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003219 492 DTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 569 (838)
Q Consensus 492 d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 569 (838)
+.-. .|..+.++|+...++|++|++++ +|.|+ |||+-|++..-+ +| +.+++..+.-+.-.+++.|+.+|+.
T Consensus 153 ~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~--vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~ 225 (229)
T 1em2_A 153 SHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCT--FVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISE 225 (229)
T ss_dssp CCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEE--EEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEE--EEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7432 22223589999999999999988 57799 999999987765 55 6778777777777889999888875
Q ss_pred H
Q 003219 570 L 570 (838)
Q Consensus 570 l 570 (838)
+
T Consensus 226 ~ 226 (229)
T 1em2_A 226 L 226 (229)
T ss_dssp T
T ss_pred h
Confidence 4
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.17 E-value=3.6e-10 Score=115.39 Aligned_cols=193 Identities=15% Similarity=0.207 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh-
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 416 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~l- 416 (838)
...+|++||+|++++.+ ++.-|.... +.| .. -|.+.++.. | -.=|..++|...+.+|.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 57899999999999976 345797652 333 11 233333211 2 34488899999999999998
Q ss_pred cC---hhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeee-ccccccccceeeEEeeeeeecCCeEEEEEEecc
Q 003219 417 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 492 (838)
Q Consensus 417 mD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~-v~SPLVp~Re~~flRyckq~~~g~waVvDvSld 492 (838)
+| +.+|-.. +..++.++.++. . -.+.|.... .+.++++.|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~-------~-t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGK-------D-TFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSS-------S-EEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCC-------C-eEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 46 4567766 233555555542 2 246664432 23568999999999999985 688999999987
Q ss_pred CCcCCCCCCCccceeecCCceeEeecCCC--ceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 493 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
.-. -|..+.++|+..+++|++|+++++| .|+ |||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~--vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTK--LTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEE--EEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEE--EEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1222358999999999999999988 899 999999988766 44 456777777777789999988887
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=109.38 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHHHhh
Q 003219 139 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (838)
+-|+.+++..|+.+|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999977 999999999999999999999999999999999998765543
No 78
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.13 E-value=3.8e-10 Score=117.35 Aligned_cols=192 Identities=15% Similarity=0.195 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-HHhcChhh
Q 003219 343 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 421 (838)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LV-e~lmD~~~ 421 (838)
+++.++.|+++.+.....-|....+.....| |.+.. +.|...-.=|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~-------~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKV-------GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECC-------CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEc-------CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 3456777888776544556976543220111 11111 12333345577778877777764 78999999
Q ss_pred hhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeee-ecCCeEEEEEEeccCCcCCCCC
Q 003219 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 500 (838)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq-~~~g~waVvDvSld~~~~~~~~ 500 (838)
|-..+ ..++.++.|+. ...++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.-. .|..
T Consensus 101 Wd~~~----~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDEDF----VQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTTB----CCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhhh----ceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 98873 34677777652 23677887777666 79999999999985 78999999999998532 2322
Q ss_pred CCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 501 PAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 501 ~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
.++|+..+++|++|+++.+|.|+ |||+-|++.. ..+|.-+..++.. .+-.-++.|+.+++
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~--vt~~~~~Dp~-G~iP~~ln~~~~~----~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSR--LTHICRIDLK-GHSPEWYSKGFGH----LCAAEVARIRNSFQ 226 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEE--EEEEEEECCS-SSCTTTTTTHHHH----HHHHHHHHHHHTTS
T ss_pred -CcEEEEEeccEEEEEECCCCCEE--EEEEEEeCCC-CCchHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 58999999999999999999999 9999999987 4577665333322 22234666644443
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.09 E-value=2.4e-11 Score=124.99 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------------cccceeeecccchhhH
Q 003219 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (838)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (838)
..+++||.|+.|++.|+.+||..|..++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4456678888999999999999999999999999999999998 7899999999999987
Q ss_pred HH
Q 003219 189 MK 190 (838)
Q Consensus 189 ~K 190 (838)
..
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5.3e-11 Score=101.64 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhH
Q 003219 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (838)
Q Consensus 143 ~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (838)
.+|+..||.+|..+++|+..++.+||..+||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.96 E-value=6.2e-11 Score=129.83 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHH
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (838)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44567799999999999999999999999999999999999999999999999986
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.94 E-value=1e-08 Score=103.19 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=118.3
Q ss_pred eeeccceeEE-echhhHHHHhcC---hhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeE
Q 003219 397 EASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (838)
Q Consensus 397 EASR~~~~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~f 472 (838)
-.-|..++|. ..+.++.+.|+| +.+|... +...+||.. +| -.++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~-~~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NG-ETVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TT-EEEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CC-CEEEEEEEEcCCCC-CCceEEE
Confidence 3568899995 999999999999 5677776 555666654 23 24789999999886 9999999
Q ss_pred Eeeeeeec-CC--eEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhc
Q 003219 473 LRFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLII 549 (838)
Q Consensus 473 lRyckq~~-~g--~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~ 549 (838)
+|+++.++ +| .|+|+-.|++.-. .|..+.++|.+.+++|++|++..+|.|+ ||++-|++.. ..+|.- |++
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~--v~~~~~~Dp~-G~iP~~---l~n 189 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSK--VFMYYFDNPG-GQIPSW---LIN 189 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEE--EEEEEEECCS-SCCCHH---HHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceE--EEEEEEECCC-CcccHH---HHH
Confidence 99999875 66 5999999987432 2222358999999999999999999999 9999999987 456643 344
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 003219 550 SGMGFGAQRWVATLQRQCECL 570 (838)
Q Consensus 550 Sg~afGA~rWlatLqR~cerl 570 (838)
..+.-++..++..|+++|+..
T Consensus 190 ~~~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 190 WAAKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHHHTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhHHHHHHHHHHHHhc
Confidence 445556778888998888743
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.87 E-value=2.4e-08 Score=102.30 Aligned_cols=190 Identities=11% Similarity=0.135 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC
Q 003219 340 FLELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD 418 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~~~~~~LVe~lmD 418 (838)
+.+.+.++|.++..+. +.-|-...+ .+ .+.|.+. ..+...-.-|..++|...+..|.+.|+|
T Consensus 26 ~~~~~~e~l~~~~~~~---~~~W~~~~~~~g----------v~vy~~~----~~~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE---EDEWRVAKKAKD----------VTVWRKP----SEEFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp HHHHHHHHHHHHTTSC---GGGCEEEEEETT----------EEEEEEE----CSSSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhC---CCCCEEEEECCC----------EEEEEEe----ccCCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 5666666666655543 556965432 22 1222210 1111223448889999999999999999
Q ss_pred hh---hhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecc-ccccccceeeEEeeeeeecCCeEEEEEEeccCC
Q 003219 419 PN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (838)
Q Consensus 419 ~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~-SPLVp~Re~~flRyckq~~~g~waVvDvSld~~ 494 (838)
.. +|-.. +..++.++.|. +.-.+.|.-+.-+ -|+|..|||.++|+.++.++| ++|+-+|++.-
T Consensus 89 ~~~r~~Wd~~----~~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp 155 (224)
T 1jss_A 89 GPWRLDWDRL----MTSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS 155 (224)
T ss_dssp STTHHHHCSS----EEEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC
T ss_pred cccccccccc----eeeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC
Confidence 65 78766 23355555543 2235666666543 457999999999999998877 78899998843
Q ss_pred cCCCCCCCccceeecCCceeEeecCCC--ceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003219 495 RETSGAPAFVNCRRLPSGCVVQDMPNG--YSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 495 ~~~~~~~~~~~~~r~PSGclIq~~~nG--~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 568 (838)
.. .+.++|+...++|++|+++++| .|+ |||+-|++.--+ +| +.+++..+.-+...++..|+.+|+
T Consensus 156 ~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~--vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 156 ET---RPEFVRGYNHPCGWFCVPLKDSPSQSL--LTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CC---CTTSEECEECSEEEEEEEETTEEEEEE--EEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC---CCCCEEEEecccEEEEEEcCCCCCceE--EEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22 2358999999999999999876 799 999999987754 44 456777777777888999987765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.66 E-value=1.1e-07 Score=100.28 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=96.3
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeecccc--ccccceeeEEeeee
Q 003219 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 477 (838)
Q Consensus 400 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SP--LVp~Re~~flRyck 477 (838)
|..++|...+..|.+.|+|.+.+.+=-+.+ ..++.++-|+. + .++| ++..++| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 788889999999999999986444443332 33566665552 1 4677 6777876 79999999999998
Q ss_pred ee-cCCe-EEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeecccccccc
Q 003219 478 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQL 543 (838)
Q Consensus 478 q~-~~g~-waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~l 543 (838)
.. .+|. ++|+-+|++.-. -|..+.++|+..+|+|++|+++++|.|+ ||++-|++- ..++..
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~--VtY~~q~dp--G~lP~~ 222 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTK--VSYYNQATP--GVLNYV 222 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEE--EEEEESCCG--GGHHHH
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEE--EEEEEeeCC--CCCCce
Confidence 74 4775 999999987432 2222358999999999999999999999 999988873 445443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.53 E-value=1.3e-06 Score=86.47 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=110.6
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeee
Q 003219 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (838)
Q Consensus 398 ASR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyck 477 (838)
.=|..++|...+.++.+.|+|.+...+--|. +...+||.. . ++ -.++|.++..|-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4677889999999999999998766665554 566667765 2 12 3567888887766 7999999999999
Q ss_pred eecCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHH
Q 003219 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 557 (838)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~ 557 (838)
...+|...|+=.+.. ..-|..+.++|++.+++|++|++ .+|.|+ ||++-|++..- .+|. -|++..+.-+.-
T Consensus 97 ~~~~g~~~i~~~~~~--~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~--vt~~~~~dp~G-~iP~---~lvn~~~~~~~~ 167 (189)
T 3qsz_A 97 KAGDGAITVRVEAVP--DYLPLRKGKVRIPRAKGQWTLVP-DADGVD--VTYQMHASPGG-SIPS---WLANQTVVETPF 167 (189)
T ss_dssp ECTTSCEEEEEEECT--TSSCCCTTSEECCCEEEEEEEEE-CSSSEE--EEEEEEECSCS-SSCH---HHHHHTTTHHHH
T ss_pred ECCCCeEEEEEEcCC--CccCCCCCeEEeeEeeEEEEEEE-CCCeEE--EEEEEEeCCCC-CCCH---HHHHHHHHHHHH
Confidence 988887655433311 11122235899999999999999 999999 99999998763 3443 345555555666
Q ss_pred HHHHHHHHHHHH
Q 003219 558 RWVATLQRQCEC 569 (838)
Q Consensus 558 rWlatLqR~cer 569 (838)
..+..|+++|+.
T Consensus 168 ~~l~~L~k~~~~ 179 (189)
T 3qsz_A 168 GTLKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhh
Confidence 788889888764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.42 E-value=1.7e-08 Score=76.29 Aligned_cols=21 Identities=48% Similarity=0.874 Sum_probs=18.2
Q ss_pred ceeeecccchhhHHHHHHHHh
Q 003219 176 RQVKFWFQNRRTQMKTQLERH 196 (838)
Q Consensus 176 rQVkvWFQNRRaK~Kk~~~r~ 196 (838)
+||+|||||||+||||++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 699999999999999876653
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.26 E-value=6.8e-06 Score=85.46 Aligned_cols=200 Identities=13% Similarity=0.211 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHH
Q 003219 340 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 415 (838)
Q Consensus 340 ~~~lA~~Am~El~~la~~---~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~~~V~-~~~~~LVe~ 415 (838)
+.++++..+.|.+..+.. ++.-|-...+.+. .+.|.+.. ...|...-.=|..++|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~g---------v~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGE---------MKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEETT---------EEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCCC---------EEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 455566666666666543 3356976533210 12222211 01122111235555555 778999999
Q ss_pred hcCh---hhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec----C--CeEEE
Q 003219 416 LMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA----E--GVWAV 486 (838)
Q Consensus 416 lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~----~--g~waV 486 (838)
|+|. .+|-.. +..++.++.|.. ++ .+.|..+..|.|+ ..|||.++|++++.. + +.|+|
T Consensus 93 l~d~~~r~~Wd~~----~~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 93 FWNVDVRNDWETT----IENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HHCGGGHHHHCCS----EEEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred HhCcchHhhhhhh----cceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 9994 566666 344666666542 12 7889999998886 889999999999883 3 59999
Q ss_pred EEEeccCCcCCCCCCCccceee---cCCceeEeecCC--------CceeeeEEEEEeeeeccccccccchhhhccchhHH
Q 003219 487 VDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFG 555 (838)
Q Consensus 487 vDvSld~~~~~~~~~~~~~~~r---~PSGclIq~~~n--------G~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afG 555 (838)
+..|++.-. .|..+.++|... +.+|++|++..+ +.|+ |||+-|++.-- .+|.- +++.....+
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~--vt~~~~~Dp~G-~iP~~---lvn~~~~~~ 232 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCK--ITYVANVNPGG-WAPAS---VLRAVAKRE 232 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEE--EEEEEEEECSS-CCCHH---HHHHHHHHH
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEE--EEEEEEeCCCC-ccCHH---HHHHHHhcc
Confidence 999998532 122224788884 679999998733 5799 99999998764 35442 344555666
Q ss_pred HHHHHHHHHHHHHHH
Q 003219 556 AQRWVATLQRQCECL 570 (838)
Q Consensus 556 A~rWlatLqR~cerl 570 (838)
.-..+..|+++|+..
T Consensus 233 ~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 233 YPKFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 777888888888744
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.43 E-value=0.0065 Score=61.82 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-
Q 003219 589 GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL- 667 (838)
Q Consensus 589 ~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FL- 667 (838)
.....++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+. + |.++ ++..-++++|+.||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~---~-~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEF---P-GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSS---S-SEEE--EEEEEESSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCC---C-CcEE--EEEEEECCCHHHHHHHHH
Confidence 34456999999999888876533 4789977 3 357899999876332 2 3444 44445599999999999
Q ss_pred -hccccchhhhhhcCCCCcceeeecccCCCCCceEEEEE-eccC----CCCCCceEEEEecccCCCCcEE-EEeecchhh
Q 003219 668 -RDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR-ASAI----NANQSSMLILQETCTDAAGSLV-VYAPVDIPA 740 (838)
Q Consensus 668 -rde~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr-~~~~----~~~~~~~liLQes~tD~sgs~v-VyAPvD~~~ 740 (838)
.|...|.+||...- ..+.+..|. .... |++ +... -...++..+|.-...+.-|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 99999999997432 233334442 1222 333 2211 1234566666654445557775 577788654
Q ss_pred hhhhhcCCCCCC--ccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh
Q 003219 741 MHVVMNGGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET 818 (838)
Q Consensus 741 m~~vm~G~D~~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t 818 (838)
+- .-+.+ +.++++||.|-|.... .++|.+|.-+|+=.... +...-|..
T Consensus 160 ~P-----~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~ 209 (231)
T 2r55_A 160 CP-----PKPGFVRGFNHPCGCFCEPLPGE---------------------PTKTNLVTFFHTDLSGY----LPQNVVDS 209 (231)
T ss_dssp SC-----CCTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCSS----CCHHHHHH
T ss_pred CC-----CCCCCEEEEEEeeEEEEEEeCCC---------------------CCcEEEEEEEEeCCCCC----ccHHHHHH
Confidence 31 11333 3589999999984210 14689988777654432 22112222
Q ss_pred -HhhhhHHHHHHHHHHhc
Q 003219 819 -VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 819 -v~~li~~tv~~Ik~Al~ 835 (838)
+..-+-.++++++.++.
T Consensus 210 ~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 210 FFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHH
Confidence 22223347777777664
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=97.02 E-value=0.015 Score=57.06 Aligned_cols=171 Identities=13% Similarity=0.135 Sum_probs=98.5
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 003219 615 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 694 (838)
Q Consensus 615 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g 694 (838)
++|... . ..++|+|.+++.. |. | +..-+....++.||+.||++|.|-..|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~--~-~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GS--P-LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA- 67 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TC--S-SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE-
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CC--C-eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee-
Confidence 579877 3 2578999999862 22 1 234566777789999999999999999999964 344433444
Q ss_pred CCCCceEEEEEeccC-CCCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCC--ccccCCccEEcCCCCCCCC
Q 003219 695 QDHGNCVSLLRASAI-NANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDGPDSRG 771 (838)
Q Consensus 695 ~~~gn~vsllr~~~~-~~~~~~~liLQes~tD~sgs~vVyAPvD~~~m~~vm~G~D~~~--v~LLPSGF~I~Pdg~~~~~ 771 (838)
+.+..|.-...... .....+..++.....|..|.++|..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC----
Confidence 33344433333322 12334555555433454466554433221110 011233 457888888888 32
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhHHHHHHHHHHhc
Q 003219 772 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 835 (838)
++|.+|.-+|+=.... + +..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~----i-P~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS----I-PSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS----S-CHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC----C-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688887777754432 2 233322 33344457777777664
No 90
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.58 E-value=0.035 Score=56.44 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccc
Q 003219 594 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 673 (838)
Q Consensus 594 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R 673 (838)
+.+.+...+..|.... ..+|... .. .++|+|.++...+. .|-+. ++..-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-KK--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-EE--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-EE--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccc
Confidence 4444444444443322 5689866 32 47899999865332 23344 44455699999999999999999
Q ss_pred hhhhhhcCCCCcceeeecccCCCCCceEEEEEeccCC---CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCC
Q 003219 674 SEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDS 750 (838)
Q Consensus 674 ~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~tD~sgs~vVyAPvD~~~m~~vm~G~D~ 750 (838)
.+||..... .+.+-+| +..+.|--......- ...++..++.....+..|.+++.-.||-+.+ .+
T Consensus 93 ~~Wd~~~~~--~~vle~i----d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~ 159 (224)
T 1jss_A 93 LDWDRLMTS--LDVLEHF----EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RP 159 (224)
T ss_dssp HHHCSSEEE--EEEEEEC----STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CT
T ss_pred cccccceee--EEEEEEc----CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CC
Confidence 999964321 2333333 333344333332221 2456677766533445556666677776653 13
Q ss_pred CCc--cccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hhhhHHHH
Q 003219 751 AYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTV 827 (838)
Q Consensus 751 ~~v--~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tv 827 (838)
.+| .++++||.|-|.... ...|.+|.-+|+=... .+...-|..+ -..+-.++
T Consensus 160 g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~~~~~ 214 (224)
T 1jss_A 160 EFVRGYNHPCGWFCVPLKDS---------------------PSQSLLTGYIQTDLRG----MIPQSAVDTAMASTLANFY 214 (224)
T ss_dssp TSEECEECSEEEEEEEETTE---------------------EEEEEEEEEECEECCS----CCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecccEEEEEEcCCC---------------------CCceEEEEEEEeCCCC----CccHHHHHHHHHHhHHHHH
Confidence 444 489999999984110 1358888666554433 2332233322 22233477
Q ss_pred HHHHHHhc
Q 003219 828 QKIKAALQ 835 (838)
Q Consensus 828 ~~Ik~Al~ 835 (838)
+.++.++.
T Consensus 215 ~~Lr~~~~ 222 (224)
T 1jss_A 215 SDLRKGLR 222 (224)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 77776654
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.44 E-value=0.083 Score=53.36 Aligned_cols=192 Identities=15% Similarity=0.214 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hccc
Q 003219 593 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDER 671 (838)
Q Consensus 593 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FL-rde~ 671 (838)
.-.++++.-+..+..-+. ...+|... . ...++|.|.+++. ++. |.++ ++..-+++||+.||++| .|..
T Consensus 11 ~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~~ 79 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERME 79 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhccc
Confidence 445555555555554443 35689976 2 1246788999984 332 4444 44445699999999999 5878
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEe--cc--CC-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhh
Q 003219 672 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRA--SA--IN-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVM 745 (838)
Q Consensus 672 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~--~~--~~-~~~~~~liLQes~tD~sgs~vVy-APvD~~~m~~vm 745 (838)
.|.+||...- ..+.+-+| +.+.. |++. .. .. ...++..+|.-...+. +.+++. -.|+-+.+-
T Consensus 80 ~r~~Wd~~~~--~~~vle~~----~~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P--- 147 (221)
T 3p0l_A 80 AMGEWNPNVK--EIKVLQKI----GKDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP--- 147 (221)
T ss_dssp GTTTSCTTCS--EEEEEEEC----SSSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC---
T ss_pred hhhhcCcchh--eEEEEEec----CCCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC---
Confidence 9999996432 23334444 22222 3332 11 11 2345677766644443 555554 455544321
Q ss_pred cCCCCCCc--cccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH--hh
Q 003219 746 NGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV--NN 821 (838)
Q Consensus 746 ~G~D~~~v--~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv--~~ 821 (838)
..+.+| .++++||.|-|.+.. ..+|.+|.-+|+=.... +..--|..+ ..
T Consensus 148 --~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~~~~~~ 200 (221)
T 3p0l_A 148 --EQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKGW----LPKSIINQVLSQT 200 (221)
T ss_dssp --CCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCSS----CCHHHHHHHHHHH
T ss_pred --CCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCCC----CCHHHHHHHHHHH
Confidence 113344 579999999984211 13688888887754433 333233332 33
Q ss_pred hhHHHHHHHHHHhc
Q 003219 822 LISCTVQKIKAALQ 835 (838)
Q Consensus 822 li~~tv~~Ik~Al~ 835 (838)
++ .+++.++.++.
T Consensus 201 ~~-~~~~~Lr~~~~ 213 (221)
T 3p0l_A 201 QV-DFANHLRKRLE 213 (221)
T ss_dssp HH-HHHHHHHHHTC
T ss_pred HH-HHHHHHHHHHh
Confidence 44 48888888876
No 92
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.31 E-value=0.084 Score=52.59 Aligned_cols=172 Identities=17% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 691 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 691 (838)
...+|... .. .++|+|..++.. +. .+..-++..-++ +||+.||++|.|...|.+||... ++.--|
T Consensus 26 ~~~~W~~~-~~--~~~v~v~~~~~~---~~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-----~~~~vl 91 (214)
T 1ln1_A 26 AGADWQLL-VE--TSGISIYRLLDK---KT---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-----KELYEQ 91 (214)
T ss_dssp TTTTCEEE-EE--ETTEEEEEEEET---TT---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-----EEEEEE
T ss_pred CCCCcEEE-EE--CCCeEEEEeccC---CC---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-----hhEEEe
Confidence 45689987 32 467999998752 21 244667778898 99999999999999999999643 222222
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEeccc--CCCC--cE-EEEeecchhhhhhhhcCCCCCC--ccccCCccEEc
Q 003219 692 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAG--SL-VVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIV 763 (838)
Q Consensus 692 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--D~sg--s~-vVyAPvD~~~m~~vm~G~D~~~--v~LLPSGF~I~ 763 (838)
-. .|+.|.-......- ...++..++.. +. |..| .+ ++.-.|+.+.+ ...+.+ +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~~-~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLRQ-RRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEEE-EEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEEE-EEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEe
Confidence 11 12333333333211 22335555553 43 3334 23 44556665542 112444 55789999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhHHHHHHHHHHhc
Q 003219 764 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 835 (838)
Q Consensus 764 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 835 (838)
|.+. ++|.+|.-.|+=.... -+..+.. +...+-.++++++.++.
T Consensus 163 p~~~-----------------------~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 163 SDGK-----------------------KGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARACQ 208 (214)
T ss_dssp ECSS-----------------------SSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCC-----------------------CceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8421 4688888877765432 2223322 33344456777776653
No 93
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.19 E-value=0.14 Score=52.00 Aligned_cols=196 Identities=9% Similarity=0.096 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHH-Hhhhcc
Q 003219 592 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 670 (838)
Q Consensus 592 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf-~FLrde 670 (838)
+.-++.++.....|-.-+. ...+|... .. ..++|+|.++...+ .|.+. ++..-+++||..|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCc
Confidence 3444444444444433332 24689877 32 12578898887531 24444 34444599999999 999999
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC---C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhc
Q 003219 671 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN 746 (838)
Q Consensus 671 ~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~tD~sgs~vVyAPvD~~~m~~vm~ 746 (838)
..|.+||...- .++.+-+| +.++.| +..+... . ...++.+++.-...+..+-++++..|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~----~~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRV----EDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEE----TTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEec----CCCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999997432 22333444 222333 2223221 1 23456666665444544445666677766531
Q ss_pred CCCCCC--ccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-Hhhhh
Q 003219 747 GGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLI 823 (838)
Q Consensus 747 G~D~~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li 823 (838)
..+.+ +.++++||.|-|.... .++|.+|.-+|+=... .+..--+.. +...+
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~l~n~~~~~~~ 212 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSASN---------------------PRVCTFVWILNTDLKG----RLPRYLIHQSLAATM 212 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSSC---------------------TTCEEEEEEECEECCS----SSCHHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCCC---------------------CCcEEEEEEEEECCCC----CCCHHHHHHHHHHHH
Confidence 11222 4579999999984110 1468888877765443 222222222 23334
Q ss_pred HHHHHHHHHHhc
Q 003219 824 SCTVQKIKAALQ 835 (838)
Q Consensus 824 ~~tv~~Ik~Al~ 835 (838)
-.+++.++.++.
T Consensus 213 ~~~~~~Lr~~~~ 224 (229)
T 1em2_A 213 FEFAFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777664
No 94
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=96.06 E-value=0.12 Score=53.21 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=101.5
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHH-HHhhhccccchhhhhhcCCCCcceeeec
Q 003219 613 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILSNGGPMQEMAHI 691 (838)
Q Consensus 613 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~v-f~FLrde~~R~eWd~ls~G~~vqe~~~i 691 (838)
...+|... . ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||...- .++.+-.|
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETL 114 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEE
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEc
Confidence 45579877 3 3578999999852 2332 22446667778777665 567777 999997543 23444444
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEecccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEcCCCCC
Q 003219 692 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPD 768 (838)
Q Consensus 692 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~tD-~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg~~ 768 (838)
. ..+.|--...+..- ...++.++|.-...| ..|++|| ...|+-+.+-. . |. =-+..+++||.|-|.+.
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~-~-g~--VR~~~~~~g~~i~P~~~- 185 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-L-GG--VRAVVMDSQYLIEPCGS- 185 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-C-SS--EECCEEEEEEEEEECST-
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC-C-Cc--EEEEEeccEEEEEECCC-
Confidence 2 23344333333322 234566666654445 3466665 44566554311 1 11 23568899999999521
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhH-HhHhhhhHHHHHHHHHHhcc
Q 003219 769 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV-ETVNNLISCTVQKIKAALQC 836 (838)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv-~tv~~li~~tv~~Ik~Al~~ 836 (838)
++|.||.-+|+=.... -+..+ ..+...+..++.++|.++..
T Consensus 186 ----------------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689988887765533 22233 11334444588889888753
No 95
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.18 E-value=0.25 Score=44.42 Aligned_cols=139 Identities=9% Similarity=-0.055 Sum_probs=80.8
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeecC
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~~ 481 (838)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|.. ....+.. + +.+.-+..|+... ++
T Consensus 7 ~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~--~~~~~~~--~--g~~~~~~~~~~~~-~~ 71 (147)
T 2d4r_A 7 ERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR--SRWVAVA--M--GKKVRWLEEEEWD-DE 71 (147)
T ss_dssp EEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE--EEEEEEE--T--TEEEEEEEEEEEE-TT
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE--EEEEEEe--C--CceEEEEEEEEEc-CC
Confidence 4456678889999999999999999974 4456665432 2321 1111222 2 2233344555443 33
Q ss_pred CeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003219 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 561 (838)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWla 561 (838)
+.-++.. .+++ +. ..+.. -.-+++.++| |+ |+|..+.+..-..+..++.+++..-+.=+.++.++
T Consensus 72 ~~~i~~~-~~~g----~~-~~~~~------~~~~~~~~~g-T~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (147)
T 2d4r_A 72 NLRNRFF-SPEG----DF-DRYEG------TWVFLPEGEG-TR--VVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLK 136 (147)
T ss_dssp TTEEEEE-EEEE----SC-SEEEE------EEEEEECSSS-EE--EEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEE-eccC----Ch-hheEE------EEEEEECCCC-cE--EEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111 1121 10 00111 1335677887 99 99998888764445556666665555567888999
Q ss_pred HHHHHHHHH
Q 003219 562 TLQRQCECL 570 (838)
Q Consensus 562 tLqR~cerl 570 (838)
.|.+.+|..
T Consensus 137 ~lk~~~e~~ 145 (147)
T 2d4r_A 137 GLEERVLAA 145 (147)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999888874
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.66 E-value=0.13 Score=54.09 Aligned_cols=181 Identities=17% Similarity=0.249 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCccC-cc-c-CchhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEE
Q 003219 556 AQRWVATLQRQCECLAILMSTSVSARDH-TA-I-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM 632 (838)
Q Consensus 556 A~rWlatLqR~cerla~l~~~~ip~~d~-~~-i-~~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~ 632 (838)
-||.-.++.|-==||.-- .|-+... .+ . .++-+.+=+.|+.-.+.+...- ....+|... . ..++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~-~--~~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLS-S--EISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEE-E--EETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEE-e--cCCCeEEE
Confidence 355555555544444331 3322222 21 1 3466666677776666544422 246789976 3 25789999
Q ss_pred EecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC---
Q 003219 633 TRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--- 709 (838)
Q Consensus 633 ~r~~~~~~g~p~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--- 709 (838)
++.. +| .++-+...-+++||+.||++|.|...|.+||... ...+.+-+|. ..+.| .+....
T Consensus 81 ~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~--~~~~vle~id----~~~iv--Y~~~~p~~~ 144 (258)
T 3fo5_A 81 TLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHY--RSVELVQQVD----EDDAI--YHVTSPALG 144 (258)
T ss_dssp EEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTC--CEEEEEEEEE----TTEEE--EEEEECCCT
T ss_pred EEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhc--cEEEEEEEcC----CCeEE--EEEecCCcc
Confidence 8642 22 3455777778999999999999999999999643 2234444442 12333 343321
Q ss_pred CC-CCCceEEEEecccC-CCCc-EEE-EeecchhhhhhhhcCCCCCCc--cccCCccEEcCCC
Q 003219 710 NA-NQSSMLILQETCTD-AAGS-LVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 766 (838)
Q Consensus 710 ~~-~~~~~liLQes~tD-~sgs-~vV-yAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg 766 (838)
.. ...+..+|.-..++ ..|. +|| .-.|+-+.+- .-+.+| ..+|+||.|-|.|
T Consensus 145 ~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 145 GHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp TCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECC
Confidence 11 22455555543232 3453 544 3345544321 123444 6899999999953
No 97
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=90.27 E-value=3.4 Score=42.34 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhccc
Q 003219 594 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 671 (838)
Q Consensus 594 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~Vl-~A~tS~wLp-v~p~~vf~FLrde~ 671 (838)
+-++.+..+..+-..+ ....+|... . ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444433 234689977 3 24679999998632 2 3321 123344456 89999999999999
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC-CCCCCceEEEEecccC----CC---CcEEEEeecchhhhhh
Q 003219 672 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTD----AA---GSLVVYAPVDIPAMHV 743 (838)
Q Consensus 672 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQes~tD----~s---gs~vVyAPvD~~~m~~ 743 (838)
.|.+||...- ..+.+-.| +.++.|--...... ....++..++.....+ .. .-+++.-.|+-+.+-
T Consensus 98 ~r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hHhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 9999996421 12222232 12222332223221 2244566666643332 22 233444456544321
Q ss_pred hhcCCCCCCcc-----ccCCccEEcCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccC
Q 003219 744 VMNGGDSAYVA-----LLPSGFAIVPD-GP-DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNS 805 (838)
Q Consensus 744 vm~G~D~~~v~-----LLPSGF~I~Pd-g~-~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s 805 (838)
..+.+|- .|.+||.|.|- |. .... ..++|.+|.-.|+=...
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~-----------------~~~~t~vt~~~~~Dp~G 218 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQEISR-----------------DNILCKITYVANVNPGG 218 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCCCCCG-----------------GGEEEEEEEEEEEECSS
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCccccc-----------------CCCcEEEEEEEEeCCCC
Confidence 1122332 36789999883 22 1100 12578888887775543
No 98
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=90.09 E-value=4.4 Score=38.98 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=83.2
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeee
Q 003219 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (838)
Q Consensus 400 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~ 479 (838)
..+.+|.-.+.++-+.+-|.++|-+.+|. |..++|+..+. +. +.+++.+.-. ..++-|.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~-----~~---~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQ-----GY---QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEET-----TE---EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCC-----CE---EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 34566777889999999999999999999 56777776432 11 3344443222 22343444444332
Q ss_pred cCCeEEEEEEeccCCcCCCCCCCccceeecCCcee-EeecCCCceeeeEEEEEeeeeccccccccchhhhcc--------
Q 003219 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV-VQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIIS-------- 550 (838)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGcl-Iq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~S-------- 550 (838)
++.. +.. ..++. +++ |. .+ .|.. +++.++|+|+ |+|.-+.++....+..++.++..-
T Consensus 74 ~~~~-i~~-~~~~~--~gp----f~---~~-~g~w~f~~~~~~~t~--V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~ 139 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--API----VG---HM-SGEWRAFTLDAERTQ--LVLTHDFVTRAAGDDGLVAGKLTPDEAREMLE 139 (172)
T ss_dssp TTTE-EEE-EEEEC--CTT----EE---EE-EEEEEEEEEETTEEE--EEEEEEEEECCCCTTSSBTTTBCHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCC----hh---hc-EEEEEEEECCCCcEE--EEEEEEEEEcChhHHHhhccccCchhhHHHHH
Confidence 2222 111 11110 111 10 01 1222 5667778999 999999999887777777765421
Q ss_pred -chhHHHHHHHHHHHHHHHHHHH
Q 003219 551 -GMGFGAQRWVATLQRQCECLAI 572 (838)
Q Consensus 551 -g~afGA~rWlatLqR~cerla~ 572 (838)
-+.=+.+.-|+.|++++|+.+.
T Consensus 140 ~~l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 140 AVVERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHh
Confidence 1122234456677777776654
No 99
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=90.08 E-value=5.6 Score=38.35 Aligned_cols=142 Identities=8% Similarity=0.017 Sum_probs=80.9
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeee--ccccccccceeeEEeeee
Q 003219 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 477 (838)
Q Consensus 400 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~--v~SPLVp~Re~~flRyck 477 (838)
..+.+|.-.+.++-+++-|.++|-+.||. |...+|++.+ |. .+.+.|. +--- - .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~------~~--~~~~rl~~~~~~~-G-~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRD------DD--KVTFRLTMHPDAD-G-KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEEC------SS--EEEEEEEECCCTT-S-CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecC------CC--EEEEEEEEEeccC-c-eEEEEEEEEEE
Confidence 35667777889999999999999999998 6778888754 11 2344443 3221 1 34444566643
Q ss_pred eecCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHH
Q 003219 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 557 (838)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~ 557 (838)
. .++..+ +..+ +.++| | +.+=.-.-+.+.++ +|+ |+|.-+.+++......+ +.+...+-=..+
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~-gt~--V~~~~df~~~~~~p~~~--~~~~~~~~~~~~ 134 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAE-GTV--MRWTQDFAMKPDAPVDD--AWMTDNINRNSR 134 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETT-EEE--EEEEEEEEECTTCSSCH--HHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCC-CEE--EEEEEEEEecCCCCCCH--HHHHHHHHhhHH
Confidence 3 233222 2221 11223 2 23334455677777 599 99999999976521111 001111111123
Q ss_pred HHHHHHHHHHHHHHH
Q 003219 558 RWVATLQRQCECLAI 572 (838)
Q Consensus 558 rWlatLqR~cerla~ 572 (838)
.-|+.|++.+|+.+.
T Consensus 135 ~~L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 135 TQMALIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh
Confidence 347778777877664
No 100
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=88.77 E-value=2.1 Score=39.82 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=83.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+..|...+.++-+.+.|.++|-+.+|.+ ..++|+..+..|. |. -+.+++.+-- -+.++-|..|+..+-.
T Consensus 6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~~--~~~~~~~~~~v~~~~~ 75 (148)
T 1t17_A 6 VTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVGF--SFLREKFATRVRRDKD 75 (148)
T ss_dssp EEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECST--TSSCCEEEEEEEEETT
T ss_pred EEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEEe--cceeEEEEEEEEEcCC
Confidence 45667778899999999999999999994 5556665432211 11 2556665522 3556667778876433
Q ss_pred CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 003219 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 560 (838)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 560 (838)
+ ..|.-..+++ +.. .+...++ +++.++| |+ |++.-+.|... .++..+...-+.-.+++.+
T Consensus 76 ~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~--v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~ 135 (148)
T 1t17_A 76 A--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TR--VEFVIEFAFKS----ALLDAMLAANVDRAAGKLI 135 (148)
T ss_dssp T--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EE--EEEEEEECCSC----HHHHHHHHHHHHHHHHHHH
T ss_pred C--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eE--EEEEEEEEECc----HHHHHHHHHHHHHHHHHHH
Confidence 3 2233333442 210 0122333 4567777 99 99998888752 2333444333334567777
Q ss_pred HHHHHHHHHH
Q 003219 561 ATLQRQCECL 570 (838)
Q Consensus 561 atLqR~cerl 570 (838)
.++.+.|+.+
T Consensus 136 ~~f~~r~~~~ 145 (148)
T 1t17_A 136 ACFEARAQQL 145 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777654
No 101
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=87.98 E-value=9.2 Score=37.24 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=79.5
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeee
Q 003219 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (838)
Q Consensus 400 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~ 479 (838)
..+.+|.-.+.++-+.+-|.++|-+.||. |...+|++.+. .-..+...+++..--. .++|..-|.+ .
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~----~~~~~~~~~~~------~~~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSE----YAEAEILRQDG------DGFDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTT----EEEEEEEEEET------TEEEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhh----eeEEEEEecCC------CEEEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 34566777888999999999999999999 56677776432 1111222222332221 2233322321 1
Q ss_pred cCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 003219 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 559 (838)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rW 559 (838)
.++..+.... +.++| | +.+=.-.-+.+.++| |+ |+|.-+.++++... +-.+.+...+.=..+..
T Consensus 73 ~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~--V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~ 136 (169)
T 3tvq_A 73 KGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TE--MRWVQEFDMKPGAP--FDNAHMTAHLNTTTRAN 136 (169)
T ss_dssp GGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EE--EEEEEEEEECTTCS--SCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EE--EEEEEEEEecCCCc--ccHHHHHHHHHhhHHHH
Confidence 2222221111 11122 2 223334557888888 99 99999999975421 11111222222223456
Q ss_pred HHHHHHHHHHHHHH
Q 003219 560 VATLQRQCECLAIL 573 (838)
Q Consensus 560 latLqR~cerla~l 573 (838)
|+.|++.+|+.+..
T Consensus 137 L~~LK~~aE~~~~~ 150 (169)
T 3tvq_A 137 MERIKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhh
Confidence 89999999988763
No 102
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=84.11 E-value=0.32 Score=42.70 Aligned_cols=42 Identities=10% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHhhccccceeeecccc
Q 003219 139 HRHTPQQIQELESLFKEC-PHPDEKQRLELSKRLCLETRQVKFWFQN 184 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~-~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 184 (838)
..|+.++....-..+... . ....++|+.+|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 458888776665555322 1 13568999999999999999743
No 103
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.59 E-value=0.33 Score=41.54 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=36.5
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeeccc
Q 003219 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (838)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 183 (838)
-.+.|+.+|+..+.+.......|+.+..|+..|||-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 347899999999999999999999999999999999994
No 104
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=78.72 E-value=23 Score=33.58 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=79.9
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+.+|.-.+.++-+.+.|.++|...||..+.- +-. + +|..+.+.+++.+-. ...|+-|..||...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~--~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDL--G-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEE--E-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEc--C-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 45677788999999999999999999986553 111 1 233444555665533 2348888899876543
Q ss_pred CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 003219 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 560 (838)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 560 (838)
+. .+ +..+. +++ +. +.+-.-.-+++.++|.|+ |+|.-+.|.. -.+..++..++..-+--.+++-+
T Consensus 78 ~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~--V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v 142 (161)
T 3p9v_A 78 AG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATA--VKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLV 142 (161)
T ss_dssp TT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEE--EEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHH
T ss_pred CC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEE--EEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHH
Confidence 33 22 22221 122 10 111112335778888899 9999888886 12333444333222233355666
Q ss_pred HHHHHHH
Q 003219 561 ATLQRQC 567 (838)
Q Consensus 561 atLqR~c 567 (838)
.+..+-+
T Consensus 143 ~af~~ra 149 (161)
T 3p9v_A 143 DTYMANL 149 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.92 E-value=4.6 Score=35.52 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=18.2
Q ss_pred hhhhHhhhhhhHHHHH----HHhhhhhh
Q 003219 240 EQHLRIENARLKDELD----RVCALAGK 263 (838)
Q Consensus 240 ~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (838)
...|..||.+||+|.. |++++.+|
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458899999999985 66666655
No 106
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=68.10 E-value=75 Score=29.28 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=63.5
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeE--Eeeeeee
Q 003219 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 479 (838)
Q Consensus 402 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~f--lRyckq~ 479 (838)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| . ..+.+.+. +-+.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~---~~~~~~~~--~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------K---YKADLQIG--IAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------E---EEEEEEEC--CGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------e---EEEEEEEE--eeeEEEEEEEEEEEEecC
Confidence 3456778889999999999999999874 566666421 1 12222221 112222222 2444434
Q ss_pred cCCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecCCCceeeeEEEEEeeeeccccccccchhhh
Q 003219 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLI 548 (838)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~ 548 (838)
....|++.-..-+. .+ +.+. =--+-+.+..+|+|+ |+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~~---~~~~~l~~~~~~gT~--v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVNA---EGVIDLTPINDECTQ--LTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEEE---EEEEEEEESSSSEEE--EEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEEE---EEEEEEEecCCCcEE--EEEEEEEEECCC-HHHhhHHHH
Confidence 44555544333221 01 1111 112335666778899 999877776433 344555555
No 107
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.40 E-value=11 Score=31.34 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=31.2
Q ss_pred HHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003219 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (838)
Q Consensus 194 ~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (838)
++.....+..+.+.|..+|..|+..+ .+|..|+..||+-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 45566778888999999999888744 467888888887653
No 108
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=65.25 E-value=2.3 Score=44.56 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=10.7
Q ss_pred hhhhhHhhhhhhHHHH
Q 003219 239 EEQHLRIENARLKDEL 254 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el 254 (838)
+.++|+.||++||+.|
T Consensus 44 ~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 44 EVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445777888887755
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.61 E-value=12 Score=33.42 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=42.7
Q ss_pred ccccceeeecccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhH
Q 003219 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (838)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 251 (838)
||+..+|.-|=|-||+-.-|--.......-.++...|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 7777777777666665444333333333334455556666655543 5567888999999
Q ss_pred HHHHHHhhh
Q 003219 252 DELDRVCAL 260 (838)
Q Consensus 252 ~el~r~~~~ 260 (838)
.|++.+...
T Consensus 76 ~e~d~~k~k 84 (90)
T 2wt7_B 76 RERDAYKVK 84 (90)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876543
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.28 E-value=14 Score=32.90 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=11.3
Q ss_pred hhHHHHhHHHHHhhHhHHh
Q 003219 199 SLLRQENDKLRAENMSIRD 217 (838)
Q Consensus 199 ~~l~~ene~L~~en~~l~e 217 (838)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665554
No 111
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.44 E-value=24 Score=28.78 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003219 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (838)
Q Consensus 194 ~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (838)
++.....+..+.+.|..+|..|... ...|+.|+..|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 4445667888888888888888763 346777777777654
No 112
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.44 E-value=17 Score=29.79 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.5
Q ss_pred HhhhhhHHHHhHHHHHhhHhHHh
Q 003219 195 RHENSLLRQENDKLRAENMSIRD 217 (838)
Q Consensus 195 r~e~~~l~~ene~L~~en~~l~e 217 (838)
......+..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777765
No 113
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.76 E-value=12 Score=25.71 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.6
Q ss_pred hhhHhhhhhhHHHHHHHh
Q 003219 241 QHLRIENARLKDELDRVC 258 (838)
Q Consensus 241 q~L~~ENa~Lk~el~r~~ 258 (838)
++|...|+|||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468889999999987554
No 114
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=43.68 E-value=4.8 Score=37.09 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=36.3
Q ss_pred ccccceeeecccchhhHHHHHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhH
Q 003219 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (838)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 251 (838)
||++.++.-.=|-||.-.-|...+.....-.++.+.|..++..|. -+..+|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~---------------------~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQ---------------------QEVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------------STTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 666666655544444433333333333333344445554443333 35667888999999
Q ss_pred HHHHHHh
Q 003219 252 DELDRVC 258 (838)
Q Consensus 252 ~el~r~~ 258 (838)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 9887654
No 115
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.62 E-value=20 Score=32.21 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCc
Q 003219 221 NPICTNCGGPAI 232 (838)
Q Consensus 221 ~~~C~~Cggp~~ 232 (838)
...||.||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 446999999764
No 116
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=42.13 E-value=16 Score=35.20 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 003219 649 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 649 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
+...|+-+..||+.||+|++|...-.+|.-
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999985
No 117
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.29 E-value=35 Score=29.66 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.2
Q ss_pred HHHHhHHHHHhhHhHH
Q 003219 201 LRQENDKLRAENMSIR 216 (838)
Q Consensus 201 l~~ene~L~~en~~l~ 216 (838)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555444
No 118
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.67 E-value=49 Score=28.18 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=5.5
Q ss_pred hhHhhhhhhHHHH
Q 003219 242 HLRIENARLKDEL 254 (838)
Q Consensus 242 ~L~~ENa~Lk~el 254 (838)
.|+.++..|..|+
T Consensus 54 ~Lr~~i~~L~~El 66 (70)
T 1gd2_E 54 QLRQKVRQLEEEL 66 (70)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 119
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.47 E-value=60 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=18.0
Q ss_pred HHhhhhhHHHHhHHHHHhhHhHHhhh
Q 003219 194 ERHENSLLRQENDKLRAENMSIRDAM 219 (838)
Q Consensus 194 ~r~e~~~l~~ene~L~~en~~l~ea~ 219 (838)
+......|..+.+.|..+|..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888887777643
No 120
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=37.58 E-value=21 Score=32.29 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhH
Q 003219 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (838)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (838)
+|.+||.++...+-..+..+.... ..++|+.+|+++..|.-|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 456799999888877775555443 3368999999999999997665543
No 121
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=37.48 E-value=19 Score=30.94 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecc
Q 003219 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (838)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 182 (838)
|+.+..|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 4455678998866555556432 1 25688999999999999885
No 122
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=36.53 E-value=16 Score=32.27 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.4
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 34678899999999999999999999963
No 123
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=34.06 E-value=15 Score=29.12 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeeccc
Q 003219 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 183 (838)
..|+++........+... ........++|+++|+++.+|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 458888877775555433 22111256899999999999999964
No 124
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.76 E-value=27 Score=29.95 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+++.|...|.-.|-... .-.++|+.+|+++..|+.+.+.=|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 477888888877553332 3568999999999999988766555555443
No 125
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=32.45 E-value=17 Score=33.85 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.3
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
...++.++.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 126
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=31.70 E-value=19 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhh
Q 003219 649 SAATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 649 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
....++.++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 46678899999999999999999999996
No 127
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=31.64 E-value=1.9e+02 Score=27.45 Aligned_cols=112 Identities=12% Similarity=0.161 Sum_probs=60.1
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+..|...+.++-++|.|-..| +-+|.++..+ +++ .|.+++.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~---e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSC---KKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCE---EEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEE---EEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 3455667888999999999999 9999885533 333 35444445787665 1 1 1233 2222221100
Q ss_pred CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecC-CCceeeeEEEEEeeeecc
Q 003219 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKLQVTWVEHAEYDE 537 (838)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~-nG~sk~~VtwVeH~e~d~ 537 (838)
-=+|-|++-.+ +... . ..+..=+=.-+.+.+ +|+|. |+|--.++.++
T Consensus 71 ~~sY~ii~g~l----~~~~-~---~~~~y~~~~~v~p~~~~ggt~--V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPS----PVSS-G---EIYNYVGNLHLLPVTIDDTTF--VEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECST----TSST-T---TEEEEEEEEEEEEETTTTEEE--EEEEEEEEESC
T ss_pred EEEEEEecCCC----cccc-c---ceeEEEEEEEEEEecCCCCEE--EEEEEEEEeCH
Confidence 11455554211 0000 0 011222222355565 78999 99998888764
No 128
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.44 E-value=14 Score=27.37 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhh
Q 003219 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (838)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 187 (838)
++.++...+...+... ....++|+.+|++...|..|++....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 5666666665556533 23568999999999999999875443
No 129
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.86 E-value=1e+02 Score=23.90 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=14.7
Q ss_pred hhhhhHhhhhhhHHHHHHHhhh
Q 003219 239 EEQHLRIENARLKDELDRVCAL 260 (838)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~ 260 (838)
++|.|..--+.|++|+.|+..-
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5666666667778888776543
No 130
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.79 E-value=1 Score=40.15 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhhhcC--CCCC-HHHHHHHHHhhccccceeeecc
Q 003219 139 HRHTPQQIQELESLFKEC--PHPD-EKQRLELSKRLCLETRQVKFWF 182 (838)
Q Consensus 139 trfT~~Ql~~LE~~F~~~--~~Ps-~~~R~eLA~~LgLs~rQVkvWF 182 (838)
.+|+.++....-..+... .|++ .....++|+++|+++.+|..|.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHH
Confidence 468888776554544322 1222 2456789999999999999885
No 131
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.77 E-value=88 Score=25.10 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.4
Q ss_pred hHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHh
Q 003219 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (838)
Q Consensus 200 ~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (838)
.++.++..|.+.|..|.+++. +-+.|-..|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 466777777777777777654 45567788899888763
No 132
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=28.26 E-value=30 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.6
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 003219 649 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 649 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
....|+.++.||+.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788899999999999999999999963
No 133
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=27.74 E-value=36 Score=30.43 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEEeeecccChhHHHHhhhccccchhh
Q 003219 649 SAATSVWLPVSPQRLFNFLRDERLRSEW 676 (838)
Q Consensus 649 ~A~tS~wLpv~p~~vf~FLrde~~R~eW 676 (838)
....+..++.||++||++|.|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457788999999999999999999999
No 134
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=27.60 E-value=28 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.3
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWDI 678 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 678 (838)
..|..++.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4688999999999999999999999964
No 135
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=26.11 E-value=70 Score=28.99 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+++.|...+...|.... .-.++|+.+|+++..|+.|.+.=|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 478888888888754332 3568999999999999999877676666544
No 136
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=25.57 E-value=39 Score=30.51 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEeeecccChhHHHHhhhccccchhhh
Q 003219 651 ATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 651 ~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 137
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.16 E-value=51 Score=24.24 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.7
Q ss_pred hhhhHhhhhhhHHHHHHHhhhh
Q 003219 240 EQHLRIENARLKDELDRVCALA 261 (838)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~ 261 (838)
...|..+|..|++|+.|+..+.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3468899999999999998875
No 138
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.95 E-value=51 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.4
Q ss_pred hhhHhhhhhhHHHHHHHhh
Q 003219 241 QHLRIENARLKDELDRVCA 259 (838)
Q Consensus 241 q~L~~ENa~Lk~el~r~~~ 259 (838)
++++.|..+||+|++++..
T Consensus 78 k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3577788999999999774
No 139
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=24.77 E-value=39 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999993
No 140
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.81 E-value=82 Score=28.40 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHHH
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (838)
.+++.|...+.-.|...- .-.++|+.+|+++..|+.+...=|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877653332 35689999999999999988766666665443
No 141
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=23.78 E-value=3.3e+02 Score=24.64 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=0.0
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeee
Q 003219 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (838)
Q Consensus 400 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~ 479 (838)
..+..|...+.++-+.|.|...|.+-+|.+ +.++++..+ +..-|+ .|.+.-
T Consensus 5 ~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v----~~~~~~~g~--~~~~G~----------------------~r~~~~- 55 (151)
T 2le1_A 5 RRSVEVAAPAADVWTLVGDFSAIHRWHPQV----SAPTLRGAS--PHTPGA----------------------ERVFGA- 55 (151)
T ss_dssp EEEEEESSCHHHHHHHHTTSGGGGGTCTTC----CCEEEESSC--TTSTTC----------------------EEEESS-
T ss_pred EEEEEecCCHHHHHHHHhCcCcHHHhcCCc----eEEEEECCC--CCCCCe----------------------EEEEEe-
Q ss_pred cCCeEEEEEEeccCCcCCCCCCCccceeecCCc----------eeEeecCCCceeeeEEEEEeeeeccccccccchhhhc
Q 003219 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSG----------CVVQDMPNGYSKLQVTWVEHAEYDESQVHQLYKPLII 549 (838)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSG----------clIq~~~nG~sk~~VtwVeH~e~d~~~vh~lyrpl~~ 549 (838)
.+|.| +.--|....+.. ..-..++-.| +-+.+..+|+|+ |+|- .+|+.+ -..+....+.
T Consensus 56 ~~G~~--~~e~i~~~d~~~----~~~~~~~~~g~~~~~~~~~~~~l~~~~~~gt~--v~w~--~~f~~~-p~~~~~~~~~ 124 (151)
T 2le1_A 56 GTEEE--LVERLVERDESA----RRLVYTMPDPPFPITNHRAVLEVVPRDDRHCT--VVWT--AMFDCS-PETARELESV 124 (151)
T ss_dssp SSSSC--EEEEEEEEETTT----TEEEEEEEECSSSEEEEEEEEEEEESSSSCEE--EEEE--EEEEEC-HHHHHHHHHH
T ss_pred CCCCE--EEEEEEEEeCCC----CEEEEEEecCCCCceeEEEEEEEEECCCCcEE--EEEE--EEEEec-CCCCCHHHHH
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 003219 550 SGMGFGAQRWVATLQRQCE 568 (838)
Q Consensus 550 Sg~afGA~rWlatLqR~ce 568 (838)
.+.-..+.-|+.|++.+|
T Consensus 125 -~~~~~~~~~L~~Lk~~~e 142 (151)
T 2le1_A 125 -IGDGVFAVGLNALAERYG 142 (151)
T ss_dssp -TTTTHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHhh
No 142
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.52 E-value=23 Score=32.11 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHH
Q 003219 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDE 253 (838)
Q Consensus 191 k~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~e 253 (838)
|+..-+++-.+....+++..||.+++..-... .....++..+..+|+.||.+|+.|
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~-------~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRL-------DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hhhHHHHHHHHHHHHHHHHHHHHH
No 143
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=23.00 E-value=4.1e+02 Score=23.73 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.6
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccc
Q 003219 403 GMVIINSLALVETLMDPNRWAEMFPCM 429 (838)
Q Consensus 403 ~~V~~~~~~LVe~lmD~~~W~~~Fp~i 429 (838)
..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 19 ~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 19 FEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 345567889999999999999999974
No 144
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=22.31 E-value=49 Score=31.49 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhh
Q 003219 649 SAATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 649 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45688999999999999999999999995
No 145
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.28 E-value=38 Score=24.35 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccc
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 184 (838)
.++.++...+...+... + ...++|+.+|++...|+.|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777776555556433 2 3568899999999999988743
No 146
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=21.96 E-value=4.6e+02 Score=23.99 Aligned_cols=116 Identities=8% Similarity=-0.058 Sum_probs=58.1
Q ss_pred cceeEEechhhHHHHhcChhhhhhhccccccceeEEEEeeCCCCCCCCCceEEeeeeeeccccccccceeeEEeeeeeec
Q 003219 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (838)
Q Consensus 401 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~GalqLM~aEl~v~SPLVp~Re~~flRyckq~~ 480 (838)
.+.+|...+.++-+.+.|.+.|-+.+|.+ ..++++.. +.. -+.++ + |.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~-------~~~-~~~~~--~--~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDD-------KRS-RWTVE--A--PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSS-------SEE-EEEEE--C--CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecC-------Cee-EEEEE--e--cCCcceEEEEEEEEEecC
Confidence 34567778889999999999999999874 45666642 111 11222 2 221244455667776554
Q ss_pred CCeEEEEEEeccCCcCCCCCCCccceeecCCceeEeecC-CCceeeeEEEEEeeeeccccccccchhh
Q 003219 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKLQVTWVEHAEYDESQVHQLYKPL 547 (838)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~-nG~sk~~VtwVeH~e~d~~~vh~lyrpl 547 (838)
+-.. +-.++++.. .. .... +-.++.+ +|+|+ |++.-+.+....-+-.++-++
T Consensus 72 ~~~i--~~~~~~g~~----~~-~~g~------~~F~~~~~~~gT~--V~~~~~~~~~~~~l~~~~~~~ 124 (155)
T 3ggn_A 72 GKRI--AWRSLPGAR----IE-NSGE------VLFRPAPGARGTE--VVVRLTYRPPGGSAGAVIARM 124 (155)
T ss_dssp TTEE--EEEECTTCS----SC-EEEE------EEEEECSSSSCEE--EEEEEEEC-------------
T ss_pred CCEE--EEEECCCCC----cc-eEEE------EEEEECCCCCceE--EEEEEEEECCCcHHHHHHHHH
Confidence 4432 233333310 00 1111 2246774 56899 998766665432333443333
No 147
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.18 E-value=62 Score=29.35 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhccccceeeecccchhhHHHHHH
Q 003219 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (838)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (838)
.+++.|...+. .|-.. ..-.++|+.+|+++..|+.+.+.=|.|.|+..
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 47777777777 33222 24578999999999999887765555555433
No 148
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=20.79 E-value=39 Score=30.71 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=25.0
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
...+..++.||++||+.|-|..+..+|-
T Consensus 10 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 10 IKQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 3467888999999999999999999995
No 149
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=20.62 E-value=38 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003219 652 TSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 652 tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999993
No 150
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=20.29 E-value=41 Score=31.22 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.9
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003219 650 AATSVWLPVSPQRLFNFLRDERLRSEWD 677 (838)
Q Consensus 650 A~tS~wLpv~p~~vf~FLrde~~R~eWd 677 (838)
...+..++.||++||++|-|..+..+|-
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~ 39 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKWF 39 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHhc
Confidence 3467889999999999999999999993
No 151
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.13 E-value=1.6e+02 Score=32.62 Aligned_cols=23 Identities=35% Similarity=0.237 Sum_probs=18.3
Q ss_pred hhhhhhHhhhhhhHHHHHHHhhh
Q 003219 238 LEEQHLRIENARLKDELDRVCAL 260 (838)
Q Consensus 238 ~~~q~L~~ENa~Lk~el~r~~~~ 260 (838)
-+.++|+.||++|+++++.+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhh
Confidence 46778999999999998876543
No 152
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.12 E-value=4.2 Score=39.38 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=21.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCH
Q 003219 133 PRKKRYHRHTPQQIQELESLFKECPHPDE 161 (838)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~ 161 (838)
+.||.|+.|+..|++.|+..|+.++||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 45677889999999999999999999874
Done!