Your job contains 1 sequence.
>003220
MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED
DIRRHRRFDSATKITQSYDSSTSTATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNSS
VDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKP
LKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLP
GTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRR
ACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKP
VTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELV
RINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKES
KVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSIDG
EEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTNVME
INETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKGSVLGE
SAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLEIVL
HLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKGEKKEAG
HLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKIDELAKLLA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003220
(838 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 1570 1.3e-178 2
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 1027 1.1e-105 2
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 624 3.7e-74 2
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 624 2.0e-73 2
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 158 7.3e-14 2
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 125 1.9e-09 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 131 1.8e-08 2
SGD|S000001431 - symbol:YIL169C "Putative protein of unkn... 125 0.00061 1
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 1570 (557.7 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 311/534 (58%), Positives = 386/534 (72%)
Query: 33 TEIRFSRWNNANAEEFNQRRRAQQEIEDDIRRHRRFDSATKITQSYDSSTSTATNGVA-F 91
+EIRFSRW NANAE F QRRR+Q+E+E +IRR RRFD+ATKI ++DS + A + F
Sbjct: 26 SEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFDAATKIVHTHDSEAAAAEPKTSPF 85
Query: 92 KSAGTXXXXXXXXXXGRKSKYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKSNIS 151
+S GT GR+SKYSKP +S + P + + + P+ A K +
Sbjct: 86 RSRGTPSLPSARSIPGRRSKYSKP--DSGPNRP-----KNKPRVPDSPPQLDA--KPEVK 136
Query: 152 ITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKK 211
++EDGL+YVI+GAPFEFKYSYTE PK KPLKLRE A++PFGPTTMGRPWTGRAPLP S+K
Sbjct: 137 LSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQK 196
Query: 212 KLKEFDSFQLXXXXXXXXXXXXXXXXYLPGTGPRYVSTREEILGEPLTADEVRELVESAK 271
+EFDSF+L + PG GPRYV ++EEILGEPLT +EVRELV S
Sbjct: 197 TPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCL 256
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+++RQLNMGRDGLTHNML+NIH WKRRR CKIKCKGVCTVDMDNVCEQLEE+ GGK+IY
Sbjct: 257 KTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIY 316
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKL 391
RRGGVL+LFRGRNYN+R+RPRFPLMLWKPV PVYPRLIQQVP+GLT +EAT MR+KGR+L
Sbjct: 317 RRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGREL 376
Query: 392 IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFE 451
+PICKLGKNGVYCDL KNV+EAFEVCELVRI+CQGM GSD+RKIGAKL+DLVPCVL+SFE
Sbjct: 377 MPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFE 436
Query: 452 REHILMWRGQEWKSSILKPGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGS 511
E IL+WRG+EWKSS+ P + ++ +VD ++ P +P+ +Q + +
Sbjct: 437 NEQILIWRGREWKSSLTTPDKKGDILEDIEVDTAL---PEDDEPSVSPNQSQTM-TQNPP 492
Query: 512 LNTFNSSISPKGYE----EVQSALREN-LSSIDGEEPFSVTKKL--SFADDNEQ 558
L++ P G++ V S+ E ++S+ VT+ SF D E+
Sbjct: 493 LDSMELQNDPDGHDLSPSTVDSSEMEGTINSLQSWSTKDVTEPTVDSFLRDLEE 546
Score = 186 (70.5 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 65/203 (32%), Positives = 100/203 (49%)
Query: 637 TSEPVSDTNECQTVLDNKGSVLGESAALSVGSETTLGSAES--TRDQSEHFYVGSLNHDY 694
T P D+ E Q D G L S S E T+ S +S T+D +E V S D
Sbjct: 488 TQNPPLDSMELQN--DPDGHDLSPSTVDSSEMEGTINSLQSWSTKDVTEPT-VDSFLRDL 544
Query: 695 QQNPSEVPEDHNVLTRLHGPSLEIVLHLMRQAVENGSXXXXXXXXXXXXSIYERSVAFAK 754
++ P + PE +++ S+E VL LM+QAVE+G+ +++ ++VAF+
Sbjct: 545 EE-PEDEPETSEEISK---QSIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSS 600
Query: 755 SAPPGPVFQQRSRKI-AIQKGEKKEAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDE 813
A PGPVFQ RK ++K E +E G+ ++ + N+VVS N + SN +
Sbjct: 601 VASPGPVFQHGLRKQPTVKKQESQEFGYGDLEAKSSNVVVSRNAS--KSSNVVVFGKREV 658
Query: 814 IEHGLDVVLSPQGSLK-IDELAK 835
E G + +GS K +DE A+
Sbjct: 659 AERG-EREEKEEGSKKKMDEFAE 680
Score = 39 (18.8 bits), Expect = 4.6e-163, Sum P(2) = 4.6e-163
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 573 PFSDSENLSSADDDEPFLASDSTTNVMEINETISATGCSNDKSDAMKNIYENVNKLENSG 632
P DS L + D S ST + E+ TI++ + K + + LE
Sbjct: 491 PPLDSMELQNDPDGHDL--SPSTVDSSEMEGTINSLQSWSTKDVTEPTVDSFLRDLEEPE 548
Query: 633 VGNDTSEPVS 642
+TSE +S
Sbjct: 549 DEPETSEEIS 558
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 1027 (366.6 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 197/353 (55%), Positives = 251/353 (71%)
Query: 114 KPATNSSVDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYT 173
KP +N ++ P R ++ K + ++ I I + G+SY + GAPFEF++SY+
Sbjct: 62 KPQSNPALKLPHHR--TRYYKPVKEGVISSDGDRT-ILIGDSGVSYQLPGAPFEFQFSYS 118
Query: 174 EAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLXXXXXXXXXXXX 233
E PK KP+ +RE AF PF P TM RPWTG+APL SKKK+ FDSF
Sbjct: 119 ETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPAGKSGVKYVE 178
Query: 234 XXXXYLP-GTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNI 292
LP G P+ REE+LGEPL E L++ +RQ+N+GRDG THNML+ I
Sbjct: 179 MPGP-LPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELI 237
Query: 293 HAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPR 352
H+HWKRRR CK++CKGV TVDM+NVC LEE+TGG+II+R GGV+YLFRGRNYNYR+RP+
Sbjct: 238 HSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQ 297
Query: 353 FPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
+PLMLWKP PVYP+LIQ+VP+GLT EEA E R KG+ L PICKL KNGVY L K+VR+
Sbjct: 298 YPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRD 357
Query: 413 AFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKS 465
AFE+ LV+++C G+ SDY+KIGAKL++LVPCVL+SF+ E ILMWRG+EWKS
Sbjct: 358 AFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKS 410
Score = 39 (18.8 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 815 EHGLDVVLSPQGSLKIDELAKLL 837
+ LD V P GSL +D++ + L
Sbjct: 538 DESLDPV-GPVGSLPVDKIVRKL 559
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 624 (224.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 120/246 (48%), Positives = 170/246 (69%)
Query: 250 REEILGEPLTADEVRELVESAKRSS--RQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
RE+I G LT E + LVE +R+ RQ+N+GRDGLTHNML++++ HWK A ++KC
Sbjct: 151 REKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCL 210
Query: 308 GVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPR 367
GV T+DM NV LE++T G+++ + G L L+RGRNY+ + RP+ PLMLWKP PVYPR
Sbjct: 211 GVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPR 270
Query: 368 LIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGM 427
LI+ DGL+++E MRKKG + + KL KNG Y L VR+AF V ELVRI+C G+
Sbjct: 271 LIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGL 330
Query: 428 NGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDA----KESKVD 483
DY+KIGAKLRDLVPC+L++F++E +++WRG+++K P D E + +ES +D
Sbjct: 331 ERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKP----PKEDDEYSSFIHRESSID 386
Query: 484 GSISVA 489
+ ++
Sbjct: 387 SDVDLS 392
Score = 143 (55.4 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 115 PATNSSVDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTE 174
P ++S+ ++P F +K NK KP + S+ +G+ V PF+F++SYTE
Sbjct: 42 PLSSSASENPDFN-----QKNNNKKKPKPQYRPPS-SL--EGVKTVHSDLPFDFRFSYTE 93
Query: 175 A-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQ 220
+ +P+ LRE +SPFGP + R WTG P K++ D +
Sbjct: 94 SCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNPKVESVDGVE 139
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 624 (224.7 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 114/219 (52%), Positives = 158/219 (72%)
Query: 245 RYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMGRDGLTHNMLDNIHAHWKRRRAC 302
++V R +LGE LT DEV EL+E + S +RQ+N+G+ G+THNM+D+IH HWK+ A
Sbjct: 130 QWVEERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAV 189
Query: 303 KIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVT 362
+IKC GV T+DMDN+C LEE++GGKI+YR +L L+RGRNY+ +SRP PLMLWKP
Sbjct: 190 RIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLWKPHP 249
Query: 363 PVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRI 422
P+YPRL++ V DGL EE EMR +G + KL +NGVY ++ VRE FE E+VR+
Sbjct: 250 PIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRL 309
Query: 423 NCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
+C + SD ++IG KL+++VPCV I F+ E I++WRG+
Sbjct: 310 DCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
Score = 136 (52.9 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 119 SSVDH-PAFRKISKREKTTN-KSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEA- 175
S+ D+ P F +SK K K +K + + D VI PF+F+YSY+E
Sbjct: 30 STDDYDPPFSPLSKPTKPPKEKKKQKTKKQDQSSELVNDLKIPVISDLPFDFRYSYSETN 89
Query: 176 PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPL 206
P+ +P+ RE FSPFGP + R WTG L
Sbjct: 90 PEIEPIGFREPKRFSPFGPGRLDRKWTGTTAL 121
Score = 66 (28.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 376 LTLEEATEMRKKGRK--LIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
LT +E TE+ ++ R LGK GV ++ ++ ++ E VRI C G+ D
Sbjct: 143 LTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMD 202
Query: 434 KIGAKLRDLVPCVLISFEREHILMWRGQEW 463
I L + ++ ++++RG+ +
Sbjct: 203 NICFHLEEKSGGKIVYRNINILVLYRGRNY 232
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 158 (60.7 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L R +++L +G+ G+T +++ IH W+ KI C+ + ++M + L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNY 347
E +TGG +I+R G + L+RG NY Y
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQY 255
Score = 117 (46.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T DE L + + L +GR G+ ++N+H HWK R KI C
Sbjct: 577 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 636
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
V E LE +GG ++ +G + ++RG+NY
Sbjct: 637 KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNY 670
Score = 112 (44.5 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 70/310 (22%), Positives = 131/310 (42%)
Query: 366 PRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ 425
P+L +G+T +E +RK G K+ P LG+ GV+ +N+ ++ ELV+I C
Sbjct: 569 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICN 628
Query: 426 GMNGSDYRKIGAKLRDLVPCVLISFEREH----ILMWRGQEW-KSSILKPGN--DSEDAK 478
+ K+ L +L++ E I+++RG+ + + L+P +A
Sbjct: 629 EYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREAL 688
Query: 479 ESKVDG----SISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGY--EEVQSALR 532
+ V+ S+ + N + L + L+ + + T++ S EE ++
Sbjct: 689 KRSVEAQRRKSLKLHVLKLSN-NIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHT 747
Query: 533 ENLSSIDGEE-PFSVTKKL-SFADDN-EQXXXXXXXXXXXXXXPFSDSENLSSADDDEPF 589
E + + E +S + S ++N E + + E+ S++
Sbjct: 748 EPEKAREKIELGYSSDLSVPSSGEENWEDDSEGEVDPLTTSSQEYQEDESESASSQRHEG 807
Query: 590 LASDSTTNVMEINETISATGCS-NDKSDAMKNIYENVN-KLENSGVGNDTSEPVSDTNEC 647
+ DST N+ ET SA S +D+S N + N N KL S G+ + +S E
Sbjct: 808 NSLDSTANLSVFAETGSANASSFHDRS-LPHNSFLNANRKLPGSSTGSGSQ--ISALRER 864
Query: 648 QTVLDNKGSV 657
++ +N G V
Sbjct: 865 KS--ENDGLV 872
Score = 108 (43.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 34/111 (30%), Positives = 60/111 (54%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
V P Y R + +P G LT +E T +R+ GR L LG+N LA + + +E
Sbjct: 359 VVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEK 418
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSS 466
CEL +I + G+ ++ + +L+ L LIS +++ I+++RG+++ S
Sbjct: 419 CELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPS 469
Score = 97 (39.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 36/142 (25%), Positives = 70/142 (49%)
Query: 376 LTLEEATEMRKKGRKLI--PICKLGKNGVYCDLAKNVREAFEVCELVRINCQGM-NGSDY 432
L+ E +RK+ K+ P +G++ V LA+ ++ F+ L +N +G NG+
Sbjct: 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934
Query: 433 RKIGAKLRDLVPCVLISFEREHILMWRG----QEWKSSILKPGNDSEDAKESKVDGSISV 488
+++ AKL++ +L+S E ++++RG +E KS P N+ + + S
Sbjct: 935 QEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKS--FYPNNNVKSSINLPSTRSFVD 992
Query: 489 APPTAGNGSAPSLTQMLLVEGG 510
PP +P+L + + +E G
Sbjct: 993 DPPHV----SPALIEAIRLECG 1010
Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDN 316
LT DE+ + + +GR+ + I W++ KI K GV + +
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 317 VCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
+ E+L+ TGG +I R + L+RG+++
Sbjct: 438 MAEELKWLTGGTLISRDKDFIVLYRGKDF 466
Score = 63 (27.2 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 61/282 (21%), Positives = 114/282 (40%)
Query: 418 ELVRINCQGM-NGSDY--RKIGAKLRDLVPCVLI--------SFEREHILMWRGQEWKSS 466
+L I+ +G+ N Y RKIG K++ P +L+ + E H L W+ +E
Sbjct: 570 QLSDIDKEGITNDEKYMLRKIGLKMK---PFLLLGRRGVFDGTIENMH-LHWKYRELVKI 625
Query: 467 ILKPGNDSEDAKESKV----DGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPK 522
I + K +++ G I VA G A ++V G + P+
Sbjct: 626 ICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYA------IIVYRGKNYERPQCLRPQ 679
Query: 523 GYEEVQSALRENLSSIDGEEPFSVTKKLSFADDNEQXXXXXXXXXXXXXXPFSDSENLSS 582
+ AL+ S++ + S+ + +N + +SD E+ +
Sbjct: 680 TLLSKREALKR---SVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNM 736
Query: 583 ADDDEPFLASDSTTNVMEINETISATGCSNDKS--DAMKNIYENVNKLENSGVGNDTSEP 640
++E + T + E I G S+D S + + +E+ ++ E + + E
Sbjct: 737 MVEEE---TENQHTEPEKAREKIEL-GYSSDLSVPSSGEENWEDDSEGEVDPLTTSSQEY 792
Query: 641 VSDTNECQTVLDNKGSVLGESAALSVGSETTLGSAESTRDQS 682
D +E + ++G+ L +A LSV +ET +A S D+S
Sbjct: 793 QEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRS 834
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 125 (49.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L R++ ++ + G+T +D I WK ++K +G ++M +
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 280
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNYRS 349
E LE++TGG +I+R G + L+RG +Y S
Sbjct: 281 HEILEKKTGGLVIWRSGTSISLYRGVSYELPS 312
Score = 102 (41.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G K+ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 635 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 694
Query: 433 RKIGAKLRDLVPCVLISFEREH----ILMWRGQEWKS-SILKPGN 472
+K+ L +L+S ++ I+++RGQ++K ++L+P N
Sbjct: 695 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKN 739
Score = 79 (32.9 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 52/243 (21%), Positives = 100/243 (41%)
Query: 363 PVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRI 422
P + L V L +EAT +R+ R + P LG++ LA + +E L +I
Sbjct: 410 PPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKI 469
Query: 423 NCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPG--------ND 473
+ G+ + ++ L+ L +++S ++ ++ +RG+ + S +
Sbjct: 470 AIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRT 529
Query: 474 SEDAKE-SKVDGSISVAPPTA--GNG--SAPSLTQMLLVEGG-SLNTFNSSISPKGYEEV 527
+D +E +++ GS ++ P+ N SA +L + L G N + S + +EV
Sbjct: 530 LQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEV 589
Query: 528 QSALRENLSSIDGEEPFSVTKKLSFADDNEQXXXXXXXXXXXXXXPFSDSENLSSADDDE 587
+ ENL + +KL+FA+ P E+ S D+E
Sbjct: 590 EILRHENLVR-------KLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEE 642
Query: 588 PFL 590
F+
Sbjct: 643 RFM 645
Score = 79 (32.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 27/111 (24%), Positives = 45/111 (40%)
Query: 239 LPGTGPRYVSTREEI---LGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAH 295
LPG P Y + + L E L A+ +GR + +
Sbjct: 401 LPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRL 460
Query: 296 WKRRRACKIKCK-GVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
W++ KI K GV + + + E L++ TGG ++ R L +RG+N+
Sbjct: 461 WEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNF 511
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 131 (51.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 250 REEILGEPLTAD-EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKG 308
R L E D E+R L ++N+ + GLT +++ I+ W++ ++K
Sbjct: 234 RAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHE 293
Query: 309 VCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
V DM E +E RTGG +I+R G V+ ++RG +Y
Sbjct: 294 VLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDY 330
Score = 86 (35.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L P P Y + +P G LT E T +RK G+ L LG+N + LA + +
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSS 466
+E + +I + G+ ++ + + +++ L VL+ + +I+++RG+++ S
Sbjct: 479 IWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPS 533
Score = 67 (28.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/152 (23%), Positives = 66/152 (43%)
Query: 379 EEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAK 438
EE RK G K+ +G GV+ + +N+ ++ ELV++ + N + +
Sbjct: 656 EERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARL 715
Query: 439 LRDLVPCVLISFEREH----ILMWRGQEWKSSI-LKPGNDSEDAKESKVDGSISVAPPTA 493
L VL++ E+ ++ +RG+ ++ I L+P N AK K SI++ A
Sbjct: 716 LEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALK--RSIAMQRHEA 773
Query: 494 GNGSAPSLTQMLLVEGGSLNTFNSSISPKGYE 525
+ L + + L + N S S +E
Sbjct: 774 LSQHISELERTIEQMQSQLTSKNPSYSESEWE 805
Score = 47 (21.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 43/197 (21%), Positives = 79/197 (40%)
Query: 432 YRKIGAKLRDLVPCVLIS-----FEREHILMWRGQEWKSSILKPGNDS---EDAKESKVD 483
+RK+G K++ +P + E H L W+ +E I K N + E A+ + +
Sbjct: 661 FRKVGLKMKAYLPIGIRGVFDGVIENMH-LHWKHRELVKLISKQKNQAFVEETARLLEYE 719
Query: 484 -GSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSIDGEE 542
G + VA G A L+ G S+ P+ AL+ +++ E
Sbjct: 720 SGGVLVAIEKVPKGFA------LIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHE- 772
Query: 543 PFSVTKKLSFADDNEQXXXXXXXXXXXXXXPFSDSE--NLSSADDDEPFLASDSTTNVME 600
++++ +S + E+ +S+SE N DDDE D N +
Sbjct: 773 --ALSQHIS---ELERTIEQMQSQLTSKNPSYSESEWENDEDDDDDEEEEKDDVEDNESD 827
Query: 601 INETISATGCSN-DKSD 616
+ET + S+ +++D
Sbjct: 828 WDETDGESAISSIEEAD 844
>SGD|S000001431 [details] [associations]
symbol:YIL169C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0016020 "membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0004871 "signal
transducer activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000727 InterPro:IPR004089 PROSITE:PS50111
SGD:S000001431 GO:GO:0016020 EMBL:BK006942 GO:GO:0004871
eggNOG:NOG12793 GeneTree:ENSGT00700000104630 OrthoDB:EOG4N33X1
EMBL:Z46921 PIR:S50358 RefSeq:NP_012097.1 ProteinModelPortal:P40442
DIP:DIP-3929N IntAct:P40442 MINT:MINT-517211 STRING:P40442
PeptideAtlas:P40442 EnsemblFungi:YIL169C GeneID:854637
KEGG:sce:YIL169C CYGD:YIL169c OMA:TATVTHC NextBio:977165
Genevestigator:P40442 GermOnline:YIL169C Uniprot:P40442
Length = 995
Score = 125 (49.1 bits), Expect = 0.00061, P = 0.00061
Identities = 53/224 (23%), Positives = 95/224 (42%)
Query: 460 GQEWKSSILKPGNDSEDAKESKVDGSISVAPPTAG-NGSAPSLTQMLLVEGGSLNTFNSS 518
GQ + +S N S + S GS+S++ A + SA + + S + +SS
Sbjct: 23 GQYYSNSTSISSNSSSTSVVSSSSGSVSISSSIAETSSSATDILSSITQSASSTSGVSSS 82
Query: 519 ISPKGYEEVQSALRENLSSIDGEEPFSVTKKLSFADDNEQXXXXXXXXXXXXXXPFSDSE 578
+ P V S++ ++ SS+ + SV++ S A D S S
Sbjct: 83 VGPSSSSVVSSSVSQSSSSVS-DVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSS 141
Query: 579 NLSSADDDEPFLASDSTTNVMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTS 638
SSA D + S S+++ +++ ++S + S SD ++ ++ + +D S
Sbjct: 142 --SSASDVSSSV-SQSSSSASDVSSSVSQSASS--ASDVSSSVSQSASST------SDVS 190
Query: 639 EPVSDTNECQTVLDNKGSVLGESAALSVGSETTLGSAESTRDQS 682
VS ++ + D SV S++ S S + SA ST D S
Sbjct: 191 SSVSQSSSSAS--DVSSSVSQSSSSASDVSSSVSQSASSTSDVS 232
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 838 760 0.00091 121 3 11 23 0.47 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 622 (66 KB)
Total size of DFA: 371 KB (2183 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 75.62u 0.16s 75.78t Elapsed: 00:00:04
Total cpu time: 75.62u 0.16s 75.78t Elapsed: 00:00:04
Start: Sat May 11 08:22:08 2013 End: Sat May 11 08:22:12 2013