BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003220
(838 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/842 (53%), Positives = 542/842 (64%), Gaps = 147/842 (17%)
Query: 1 MALKLI-IPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIE 59
MALKL PFPIF+PP +PNP +HRP+TE+ FSRW NANA++FNQR R+QQEIE
Sbjct: 1 MALKLFPTPFPIFAPP-------SPNP-SHRPSTEVHFSRWFNANADKFNQRYRSQQEIE 52
Query: 60 DDIRRHRRFDSATKITQSYDSSTSTATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNS 119
+DI R RRF SA I +YD + + FKS GTPSSPS PSIPG+KSKYSKP +
Sbjct: 53 EDISRRRRFTSANNIVTNYDPKNAAEVDISFFKSTGTPSSPSSPSIPGKKSKYSKPLKKT 112
Query: 120 SVDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAK 179
HPAF R + + P K++I ++EDG+SYVIDGAPFEFKYSYTE PK K
Sbjct: 113 ---HPAFLPKITRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVK 169
Query: 180 PLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYL 239
PLKLREA ++PFGP TM RPWTGRAPLPPSKKKL+EFDSF LPPP+KKGVKPVQ PGP+L
Sbjct: 170 PLKLREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFL 229
Query: 240 PGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
PG GPRY TREEILG+PLT +E++ELV+ ++ RQLNMGRDGLTHNMLDNIHAHWKRR
Sbjct: 230 PGAGPRYAKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRR 289
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
R CKIKCKGVCTVDMDNVC+QLEERTGGKIIYR+GGVLYLFRGRNYNYR RPRFPLMLWK
Sbjct: 290 RVCKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWK 349
Query: 360 PVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCEL 419
PVTPVYPRLIQ+ P+GLTL+EA+ MR KGRKLIPICKLGKNGVY DL +NVREAFE CEL
Sbjct: 350 PVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECEL 409
Query: 420 VRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKE 479
VRINCQGMNGSD+RKIGAKLRDLVPCVLISFE EHILMWRG++WKSS KP ND ++AK
Sbjct: 410 VRINCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEAKN 469
Query: 480 SKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSID 539
S +DG+ S P L+EG TF+ + S L S +D
Sbjct: 470 SSIDGATSATP---------------LLEGLQNETFSVKDA--------STLNLKTSRMD 506
Query: 540 GEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTNVM 599
E+ E+LS D DE F A +
Sbjct: 507 AED---------------------------------QGEDLSQKDIDETFAAKIFISTST 533
Query: 600 EINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKGSVLG 659
EI E S T ND S A+
Sbjct: 534 EIYE--SKTTPDNDDSSAVT---------------------------------------- 551
Query: 660 ESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLEIV 719
+S A+ + S + L + SE + LN Y Q E+
Sbjct: 552 KSEAMRIASGSELQNVSEGSHVSE---LAKLNESYTQGVLEL------------------ 590
Query: 720 LHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKGEKKEA 779
++QAVE GSA+VL DA LDAD++Y+++VAFA+SAPPGPVF+++ R +QK E +E
Sbjct: 591 ---LKQAVEIGSAVVL-DANLDADAVYQKAVAFAQSAPPGPVFRRQPRNTVVQKSEMQEN 646
Query: 780 GHLKMKREVPNMVVSENR---GNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKIDELAKL 836
G L++K+ V S ++ G+ R+S++ + K + E +D V PQGSL++DELAKL
Sbjct: 647 GELEVKQ-----VTSFSKMGGGSERKSSKVRRKYFN--EQYVDSV--PQGSLRVDELAKL 697
Query: 837 LA 838
LA
Sbjct: 698 LA 699
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/844 (52%), Positives = 549/844 (65%), Gaps = 98/844 (11%)
Query: 1 MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED 60
MALK +IPFPI L P+ P+HRPA+E+RFSRWNNANAE F R RAQ+EIED
Sbjct: 1 MALKTLIPFPI----------LAPSNPSHRPASEVRFSRWNNANAERFTLRERAQKEIED 50
Query: 61 DIRRHRRFDSATKITQSYDSSTST-ATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNS 119
+IRR RRFDSAT+I D+ TS A FKS GTPSSPS+PSIPG+ SKYS NS
Sbjct: 51 NIRRERRFDSATRIADIDDAGTSKEAAAAGTFKSTGTPSSPSKPSIPGKSSKYS---KNS 107
Query: 120 SVDHPAFRKISKREKTT--NKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 177
HPAFR+IS+R K N SPE +K ISI EDG+SY++ G PFE +YSYTE PK
Sbjct: 108 KTSHPAFRQISRRTKLPGPNISPE----AKRGISIGEDGVSYMVPGVPFELRYSYTETPK 163
Query: 178 AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 237
KP+ LRE F PFGP TM RPWTGRAPLPPSKKKLKEFDSFQLPPP KK VKPVQ PGP
Sbjct: 164 VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLPPPGKKRVKPVQAPGP 223
Query: 238 YLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWK 297
+LPG+GPRYV +REEILGEPLT +E++ELV+ +S RQLNMGRDGLTHNMLDNIHAHWK
Sbjct: 224 FLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWK 283
Query: 298 RRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLML 357
RRR CKIKCKGVCTVDMDNV +QLEE+TGGK+IY +GGVL+LFRGRNYNYR+RPRFPLML
Sbjct: 284 RRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNYNYRNRPRFPLML 343
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC 417
WKPVTPVYPRL+Q+ P+GLTLEEA MRKKGRKLIPICKL KNGVY DL NVREAFE C
Sbjct: 344 WKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEEC 403
Query: 418 ELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDA 477
ELVRINCQG+N SDYRKIGAKL+DLVPCVLISFE EHILMWRG +WK KP + ++A
Sbjct: 404 ELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDGCKEA 463
Query: 478 KESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSS 537
KES + S+ PP G + S + + V+ SL+ ++ SP E+V E+LSS
Sbjct: 464 KESDNNSEASIPPPFEGQELSASCSSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSS 523
Query: 538 IDGEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTN 597
++ LS +D+PF+ ++ + +A + + TN
Sbjct: 524 ----------------------KGNDILSFEGNDKPFAATQLVKTAYNWDTVSDDTGGTN 561
Query: 598 VMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKGSV 657
EI T KL+N+ +D
Sbjct: 562 ESEIILT----------------------KLDNAHHADD--------------------- 578
Query: 658 LGESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLE 717
ESAA+ V +T L E+ ++E + + D Q+ + +D +T P
Sbjct: 579 --ESAAMPVELDTML---ENGSIKNELMDAVTHDMDKLQDIPKASQDCGKMTGSSAPCTG 633
Query: 718 IVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKGEKK 777
+L L++QAV++GSA+VLD + DAD +Y ++VAF+K APPGPVF +R RK A+QK EK+
Sbjct: 634 GLLLLLKQAVDSGSAVVLDGDSCDADIVYGKTVAFSKDAPPGPVF-RRPRKAAVQKCEKE 692
Query: 778 EAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDV---VLSPQGSLKIDELA 834
E L V +V + +G + + + D E LDV + +G+L +DELA
Sbjct: 693 EPRDLV----VGKIVTAPEKGRSQSKSSRNQIAKDFKEGYLDVDYPGVGTRGTLGVDELA 748
Query: 835 KLLA 838
KLLA
Sbjct: 749 KLLA 752
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/847 (52%), Positives = 559/847 (65%), Gaps = 111/847 (13%)
Query: 1 MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED 60
MALKL PFPIF+P NPN + P+HR TEIRFSRW NANAE+F QRRR+QQEIED
Sbjct: 1 MALKLPFPFPIFTP--QFNPN---STPSHRTLTEIRFSRWYNANAEKFEQRRRSQQEIED 55
Query: 61 DIRRHRRFDSATKITQ--SYDSSTSTATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATN 118
+IRR RRF SA KI DS +S F+S GTPSSPSRPSIPGRKSKYSK N
Sbjct: 56 EIRRERRFSSAAKIVDLCDSDSPSSAIDRNETFRSVGTPSSPSRPSIPGRKSKYSK---N 112
Query: 119 SSVDHPA-FRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 177
+ D P+ FR++SK +KT N E+ ++N+S++EDG+SYVIDGAPFEFKYSYTE PK
Sbjct: 113 PNPDSPSPFRQVSKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPK 172
Query: 178 AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 237
KP+KLRE ++PFGPTTM RPWTGRAPLPPSKKKL EFDSFQLPP NKKGVKPVQ PGP
Sbjct: 173 VKPIKLREP-YAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGP 231
Query: 238 YLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWK 297
+L G+GP+YV +REEILGEPLT +E++ L+ S+RQLN+GRDGLTHNML+NIHA WK
Sbjct: 232 FLAGSGPKYVMSREEILGEPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWK 291
Query: 298 RRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLML 357
RRR CKIKCKGVCTVDMDNV +QLEERTGGKIIY RGG LYL+RGRNYNY++RPRFPLML
Sbjct: 292 RRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLML 351
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC 417
WKP PVYPRL++ +PDGLTLEE TEMRKKGRKLIPICKLGKNGVY L K+VREAFE C
Sbjct: 352 WKPAAPVYPRLVKHIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFEEC 411
Query: 418 ELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDA 477
ELVRINCQG+NGSD+RKIGAKL+DLVPCVLISFE EHIL+WRG++WKSS+ + E A
Sbjct: 412 ELVRINCQGLNGSDFRKIGAKLKDLVPCVLISFESEHILLWRGRDWKSSLPYIERNPEGA 471
Query: 478 KESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSS 537
K D + VA PS+ Q + V+ NT S S E+LS+
Sbjct: 472 KAHGTDETTIVA---------PSIEQDVSVK----NTLTSLDS------------EDLST 506
Query: 538 IDGEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTN 597
E+P + + A++S+S +D ++L++ + F++ D
Sbjct: 507 GGNEDP-------------DSMIAEKSIS--------ADVDSLTTTMHESNFVSYDE--- 542
Query: 598 VMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKGSV 657
ATG + KL + D LD+ ++
Sbjct: 543 --------EATGLDD-------------QKLHTATTSED--------------LDSWSTI 567
Query: 658 LGESAALSVGSETTLGSAESTRDQSE-----HFYVGSLNHDYQQNPSEVPEDHNVLTRLH 712
G + + G E + +S D++E F + + + N E LT+
Sbjct: 568 SGGESEIESGYEFS----DSDFDEAEPMEQLEFDSIAATGNSETNGLYTSEGSQALTKPT 623
Query: 713 GPSLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQ-QRSRKIAI 771
+ + VL L++QAVENGSA+VLD ++LDAD IY++SVAF++SAPP PVF+ +R +K+A
Sbjct: 624 SNATDGVLQLLKQAVENGSAVVLDSSSLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAA 683
Query: 772 QKGEKKEAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKID 831
K E++ + L++K E VS GN ++ + K KN + E+ SPQGSL +D
Sbjct: 684 DKSEEETSRELEVKEE--ETAVSMEVGNDKKKDSKTKKNKNFGEYNFS---SPQGSLGVD 738
Query: 832 ELAKLLA 838
ELAKLLA
Sbjct: 739 ELAKLLA 745
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/844 (52%), Positives = 539/844 (63%), Gaps = 127/844 (15%)
Query: 1 MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED 60
MALK +IPFPI L P+ P+HRPA+E+RFSRWNNANAE F R RAQ+EIED
Sbjct: 1 MALKTLIPFPI----------LAPSNPSHRPASEVRFSRWNNANAERFTLRERAQKEIED 50
Query: 61 DIRRHRRFDSATKITQSYDSSTST-ATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNS 119
+IRR RRFDSAT+I D+ TS A FKS GTPSSPS+PSIPG+ SKYS NS
Sbjct: 51 NIRRERRFDSATRIADIDDAGTSKEAAAAGTFKSTGTPSSPSKPSIPGKSSKYS---KNS 107
Query: 120 SVDHPAFRKISKREKTT--NKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 177
HPAFR+IS+R K N SPE +K ISI EDG+SY++ G PFE +YSYTE PK
Sbjct: 108 KTSHPAFRQISRRTKLPGPNISPE----AKRGISIGEDGVSYMVPGVPFELRYSYTETPK 163
Query: 178 AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 237
KP+ LRE F PFGP TM RPWTGRAPLPPSKKKLKEFDSFQLPPP KK VKPVQ PGP
Sbjct: 164 VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLPPPGKKRVKPVQAPGP 223
Query: 238 YLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWK 297
+LPG+GPRYV +REEILGEPLT +E++ELV+ +S RQLNMGRDGLTHNMLDNIHAHWK
Sbjct: 224 FLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWK 283
Query: 298 RRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLML 357
RRR CKIKCKGVCTVDMDNV +QLEE+TGGK+IY +GGVL+LFRGRNYNYR+RPRFPLML
Sbjct: 284 RRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNYNYRNRPRFPLML 343
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC 417
WKPVTPVYPRL+Q+ P+GLTLEEA MRKKGRKLIPICKL KNGVY DL NVREAFE C
Sbjct: 344 WKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEEC 403
Query: 418 ELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDA 477
ELVRINCQG+N SDYRKIGAKL+DLVPCVLISFE EHILMWRG +WK KP + ++A
Sbjct: 404 ELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDGCKEA 463
Query: 478 KESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSS 537
KES + S+ PP G + S + + V+ SL+ ++ SP E+V E+LSS
Sbjct: 464 KESDNNSEASIPPPFEGQELSASCSSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSS 523
Query: 538 IDGEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTN 597
++ LS +D+PF+ ++ + +A
Sbjct: 524 ----------------------KGNDILSFEGNDKPFAATQLVKTA-------------- 547
Query: 598 VMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKGSV 657
N + + + G + SE + T LDN
Sbjct: 548 -------------------------YNWDTVSDDTGGTNESEII------LTKLDNAHHA 576
Query: 658 LGESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLE 717
ESAA+ V +T L + GS+ +D P
Sbjct: 577 DDESAAMPVELDTMLEN-------------GSIKND-------------------APCTG 604
Query: 718 IVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKGEKK 777
+L L++QAV++GSA+VLD + DAD +Y ++VAF+K APPGPVF +R RK A+QK EK+
Sbjct: 605 GLLLLLKQAVDSGSAVVLDGDSCDADIVYGKTVAFSKDAPPGPVF-RRPRKAAVQKCEKE 663
Query: 778 EAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDV---VLSPQGSLKIDELA 834
E L V +V + +G + + + D E LDV + +G+L +DELA
Sbjct: 664 EPRDLV----VGKIVTAPEKGRSQSKSSRNQIAKDFKEGYLDVDYPGVGTRGTLGVDELA 719
Query: 835 KLLA 838
KLLA
Sbjct: 720 KLLA 723
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/490 (73%), Positives = 418/490 (85%), Gaps = 8/490 (1%)
Query: 1 MALKLI-IPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIE 59
MALK + FP+FSPP NPNL +HRP ++I FSRWNNANA EFN RRRAQ+EIE
Sbjct: 1 MALKFFPVQFPVFSPP--LNPNLLSQTQHHRPPSDIHFSRWNNANAREFNDRRRAQKEIE 58
Query: 60 DDIRRHRRFDSATKITQSYDSSTSTATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNS 119
+DIRR+RRF+SA I +YDS+TS KS GTPSSPS PSIPGRKSKYSKP + +
Sbjct: 59 EDIRRNRRFNSAANIIDNYDSATSN--ENFKSKSIGTPSSPSAPSIPGRKSKYSKPESPT 116
Query: 120 SVDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAK 179
S HPAFR ISK T PEKP +++ ++EDGLS+V+DGAPFEFKYSYTE PKAK
Sbjct: 117 S-HHPAFRSISK--ITKKPLPEKPIDRNADVKLSEDGLSFVVDGAPFEFKYSYTETPKAK 173
Query: 180 PLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYL 239
P+KLREA FSPFGPTTMGRPWTGRAPLPPSKKKL+EFDSF+LPPP+KKGVKPVQKPGP+L
Sbjct: 174 PIKLREAPFSPFGPTTMGRPWTGRAPLPPSKKKLREFDSFKLPPPDKKGVKPVQKPGPFL 233
Query: 240 PGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
PG GPRYV +REEILGEPLT +EV+ L+E ++ RQLNMGRDGLTHNMLDNIHAHWKRR
Sbjct: 234 PGAGPRYVYSREEILGEPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRR 293
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
R CKIKC GVCTVDMDNVC+QLEERTGGK+IYR+GGV+YLFRGRNYNYR+RPRFPLMLWK
Sbjct: 294 RVCKIKCMGVCTVDMDNVCQQLEERTGGKVIYRKGGVVYLFRGRNYNYRTRPRFPLMLWK 353
Query: 360 PVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCEL 419
PVTPVYPRLI++ P+GLTLEEA+EMR+KGRKLIPICKL KNGVYC+L K VREAFE CEL
Sbjct: 354 PVTPVYPRLIKRAPEGLTLEEASEMRRKGRKLIPICKLAKNGVYCNLVKEVREAFEECEL 413
Query: 420 VRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKE 479
VRI+CQG+NGSDYRK+GAKL++LVPC+LISFE EHILMWRG++WKSS++KP NDS +A
Sbjct: 414 VRIDCQGVNGSDYRKVGAKLKELVPCLLISFEHEHILMWRGRDWKSSMIKPVNDSVEAIG 473
Query: 480 SKVDGSISVA 489
S V+ + S+A
Sbjct: 474 SDVNSATSIA 483
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 108/195 (55%), Gaps = 19/195 (9%)
Query: 648 QTVLDNKGSVLGESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNV 707
++V++N A+SV SET L S S ++ HD E +D N
Sbjct: 567 ESVVNNMDPANEMPVAMSVSSETVLESVGSKKEL----------HDVS---IECSDDVNK 613
Query: 708 LTRLHGPSLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSR 767
L + VL L +QAVE+GSAL+L DA LDAD +Y+R+VAFAKSAPPGPVF+ RS+
Sbjct: 614 PANLSVSYADRVLLLWKQAVESGSALILVDADLDADIVYQRAVAFAKSAPPGPVFRHRSK 673
Query: 768 KIAIQKGEKKEAGHLKMKR----EVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDVVLS 823
K +I+K EK+E+ + K E VS+ G+ +S++ + K + L+ +
Sbjct: 674 KASIRKSEKQESKDSEPKEFLNLEYLETNVSQTMGSENKSSKPQRKKKSREQQNLNS--A 731
Query: 824 PQGSLKIDELAKLLA 838
G L +DELAKLLA
Sbjct: 732 RLGRLGVDELAKLLA 746
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/851 (49%), Positives = 517/851 (60%), Gaps = 141/851 (16%)
Query: 1 MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED 60
MALKL FPIF+P +L+PNP R ++E+RFSRWNN N RR
Sbjct: 1 MALKLPHTFPIFAP------SLDPNPNPPRQSSELRFSRWNNPETRSPNARR-------- 46
Query: 61 DIRRHRRFDSATKITQSYDSSTSTATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNSS 120
TP RP+ P ++SK
Sbjct: 47 -----------------------------------TP----RPTGPAKRSKSPARPKVDR 67
Query: 121 VDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKP 180
HPAFR S K+ P++ + + N+ I++DGLSYVIDGAPFEFKYSYTE PK KP
Sbjct: 68 QSHPAFR-FSNIPKS---KPQRVSGAPENVKISDDGLSYVIDGAPFEFKYSYTETPKVKP 123
Query: 181 LKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLP 240
+K+REA F PFGP TM RPWTGRAPLP SKKKLKEFDSF LPPP+KKGVKPVQ PGPYL
Sbjct: 124 IKMREAPFVPFGPDTMPRPWTGRAPLPASKKKLKEFDSFVLPPPHKKGVKPVQSPGPYLA 183
Query: 241 GTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRR 300
GTGPRYV +REEILGEPLT +E+R+LV+S ++ RQLN+GRDGLTHNMLDNIHAHWKRRR
Sbjct: 184 GTGPRYVKSREEILGEPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRR 243
Query: 301 ACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKP 360
ACKI+CKGVCTVDMDNVC QLEERTGGKII+R+GGVLYLFRGRNYNY++RP FPLMLWKP
Sbjct: 244 ACKIRCKGVCTVDMDNVCHQLEERTGGKIIHRKGGVLYLFRGRNYNYKTRPHFPLMLWKP 303
Query: 361 VTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELV 420
V PVYPRL+Q+VP+GLTLEEAT+MR+KG LIPICKLGKNGVYCDL K VREAFE CELV
Sbjct: 304 VPPVYPRLVQRVPEGLTLEEATKMRQKGSTLIPICKLGKNGVYCDLVKTVREAFEECELV 363
Query: 421 RINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKES 480
RINCQG+N SDYRKIGAKLRDLVPC L+SFE EHILMWRG WKSSI G+D +++K+
Sbjct: 364 RINCQGLNKSDYRKIGAKLRDLVPCTLLSFEYEHILMWRGPNWKSSIPDRGDDRKESKQI 423
Query: 481 KVDG-SISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSID 539
+VD + P A SAPSL QM +E S N + + +V ++D
Sbjct: 424 EVDHKNYKPLPSEALEFSAPSL-QMNPLEHES-NLLHDTSISSISSDV---------TLD 472
Query: 540 GEEPFSVTKKLSFADDNEQLSAD-----ESLSLADDDEPFSDSENLSSADDDEPFLASDS 594
E +S+ ++N S SL+ D E +DS + + + L
Sbjct: 473 KVE-------VSYPNENSHQSMSGVTEVPSLTKIYDVETTNDSTDSYAEPEPRTSLIPSM 525
Query: 595 TTNVMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNK 654
T + + S+ S E+ G +E + D+ C
Sbjct: 526 TIPHYDSHAEFSSKAMS-----------------ESHG-----TEHIMDSKSCSD----- 558
Query: 655 GSVLGESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGP 714
G SA++S GS TLG + D S + V S ++ E ED + R P
Sbjct: 559 ----GLSASIS-GSHATLGGS----DNSTNGMVDSHSNKLLDALGE--EDVSQAPRSAAP 607
Query: 715 SLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKG 774
S++ + L+ QAVE GSALVLD +LDAD+IY+ +VAFAKSAPPGP F++ ++ ++ QK
Sbjct: 608 SMKAIWLLLEQAVEKGSALVLDKDSLDADNIYQNTVAFAKSAPPGPAFRKNTKAVS-QKN 666
Query: 775 EKKEAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEI-------EHGLDVVLSPQGS 827
K+E L E + S ++K +NS +I + L+VV PQG+
Sbjct: 667 PKQEGSTL------------ETKETTIDSMKRKKENSTKIPRKANFDDQLLNVV--PQGT 712
Query: 828 LKIDELAKLLA 838
L +DELAKLL
Sbjct: 713 LGVDELAKLLT 723
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/491 (68%), Positives = 395/491 (80%), Gaps = 25/491 (5%)
Query: 1 MALKLIIPFPIFSPP--PNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEI 58
M+LKL PFPIF+P PNHNP R +EIRFSRW NANAE F QRRR+Q+E+
Sbjct: 1 MSLKLNTPFPIFAPSLFPNHNP---------RAPSEIRFSRWGNANAERFEQRRRSQEEL 51
Query: 59 EDDIRRHRRFDSATKITQSYDSSTSTATNGVA-FKSAGTPSSPSRPSIPGRKSKYSKPAT 117
E +IRR RRFD+ATKI ++DS + + + F+S GTPS PS SIPGR+SKYSKP
Sbjct: 52 EAEIRRDRRFDAATKIVHTHDSEAAASEPKTSPFRSRGTPSLPSARSIPGRRSKYSKP-- 109
Query: 118 NSSVDHPAFRKISKREKTTNKSPEKPAA--SKSNISITEDGLSYVIDGAPFEFKYSYTEA 175
+S + P K + P+ P +K + ++EDGLSYVI+GAPFEFKYSYTE
Sbjct: 110 DSGPNKP---------KNKPRVPDSPPQLDAKPEVKLSEDGLSYVINGAPFEFKYSYTET 160
Query: 176 PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKP 235
PK KPLKLRE A++PFGPTTMGRPWTGRAPLP S+K +EFDSF+LPP KKGVKPVQKP
Sbjct: 161 PKVKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPDGKKGVKPVQKP 220
Query: 236 GPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAH 295
GP+ PG GPRYV T+EEILGEPLT +E+RELV S +++RQLNMGRDGLTHNML+NIH
Sbjct: 221 GPFRPGLGPRYVYTKEEILGEPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDL 280
Query: 296 WKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPL 355
WKRRR CKIKCKGVCTVDMD VCEQLEE+ GGK+IYRRGGVL+LFRGRNYN+R+RPRFPL
Sbjct: 281 WKRRRVCKIKCKGVCTVDMDKVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPL 340
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
MLWKPV PVYPRLIQQVP+GLTL+EATEMR+KGR+L+PICKLGKNGVYCDL KNV+EAFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSE 475
VCELVRI+CQGM GSD+RKIGAKL+DLVPCVLISFE E IL+WRG+EWKSS+ P +
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLISFENEQILIWRGREWKSSLTIPDKKDD 460
Query: 476 DAKESKVDGSI 486
++ +VD ++
Sbjct: 461 ILEDIEVDAAL 471
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 715 SLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKI-AIQK 773
S+E VL+LM+QAVE+G+ALVLD A LDAD+++ ++V F+ A PGPVFQ RK ++K
Sbjct: 561 SIERVLNLMKQAVESGTALVLDAADLDADTVFSKAVTFSTVASPGPVFQHGLRKQPTVKK 620
Query: 774 GEKKEAGHLKMKREVPNMVVSEN---RGNVRQSNRKKTKNSDEIE--HGLDVVLS----- 823
E +E G+ ++ + N+VVS N NV S +++ S E E GL +
Sbjct: 621 QESREFGYRNLEAKSSNVVVSRNASKSSNVVVSGKREVAVSGEREEKEGLKKKMDEFAED 680
Query: 824 -----PQGSLKIDELAKLLA 838
P G+LK+DELAKLLA
Sbjct: 681 YREVIPHGTLKLDELAKLLA 700
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/491 (67%), Positives = 393/491 (80%), Gaps = 25/491 (5%)
Query: 1 MALKLIIPFPIFSPP--PNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEI 58
M+LKL PFPIF+P PNHNP R +EIRFSRW NANAE F QRRR+Q+E+
Sbjct: 1 MSLKLNTPFPIFAPSLFPNHNP---------RAPSEIRFSRWGNANAERFEQRRRSQEEL 51
Query: 59 EDDIRRHRRFDSATKITQSYDSSTSTATNGVA-FKSAGTPSSPSRPSIPGRKSKYSKPAT 117
E +IRR RRFD+ATKI ++DS + A + F+S GTPS PS SIPGR+SKYSKP +
Sbjct: 52 EAEIRRDRRFDAATKIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKPDS 111
Query: 118 NSSVDHPAFRKISKREKTTNKSPEKPAA--SKSNISITEDGLSYVIDGAPFEFKYSYTEA 175
+ R K + P+ P +K + ++EDGL+YVI+GAPFEFKYSYTE
Sbjct: 112 GPN-----------RPKNKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTET 160
Query: 176 PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKP 235
PK KPLKLRE A++PFGPTTMGRPWTGRAPLP S+K +EFDSF+LPP KKG+KPVQKP
Sbjct: 161 PKVKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKP 220
Query: 236 GPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAH 295
GP+ PG GPRYV ++EEILGEPLT +EVRELV S +++RQLNMGRDGLTHNML+NIH
Sbjct: 221 GPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDL 280
Query: 296 WKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPL 355
WKRRR CKIKCKGVCTVDMDNVCEQLEE+ GGK+IYRRGGVL+LFRGRNYN+R+RPRFPL
Sbjct: 281 WKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPL 340
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
MLWKPV PVYPRLIQQVP+GLT +EAT MR+KGR+L+PICKLGKNGVYCDL KNV+EAFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSE 475
VCELVRI+CQGM GSD+RKIGAKL+DLVPCVL+SFE E IL+WRG+EWKSS+ P +
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD 460
Query: 476 DAKESKVDGSI 486
++ +VD ++
Sbjct: 461 ILEDIEVDTAL 471
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 19/142 (13%)
Query: 715 SLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKI-AIQK 773
S+E VL LM+QAVE+G+ALVLD A LDAD+++ ++VAF+ A PGPVFQ RK ++K
Sbjct: 561 SIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVASPGPVFQHGLRKQPTVKK 620
Query: 774 GEKKEAGHLKMKREVPNMVVSEN---RGNVRQSNRKKTKNS--------------DEIEH 816
E +E G+ ++ + N+VVS N NV +++ DE
Sbjct: 621 QESQEFGYGDLEAKSSNVVVSRNASKSSNVVVFGKREVAERGEREEKEEGSKKKMDEFAE 680
Query: 817 GLDVVLSPQGSLKIDELAKLLA 838
V+ P G+LK+DELAKLLA
Sbjct: 681 DYREVM-PHGTLKVDELAKLLA 701
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/740 (50%), Positives = 467/740 (63%), Gaps = 87/740 (11%)
Query: 113 SKPATNSSVDHPA--FRKISKRE-KTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFK 169
SKP + HPA F I K++ K NK+PE N+ I+EDG+SYVI+GAPFEFK
Sbjct: 32 SKPKVDPQ-SHPALKFSNIPKQKLKPVNKTPE-------NVKISEDGVSYVIEGAPFEFK 83
Query: 170 YSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGV 229
YSYTE PK+KP+++RE F PFGP TM RPWTGR PLPPSKKKLKEFDSF LPPP+KKGV
Sbjct: 84 YSYTETPKSKPVQMREPPFVPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGV 143
Query: 230 KPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNML 289
KPVQ PGP+LPGT PRYV +REE+LGEPLT +E+ ELV S +SSRQLN+GRDG HNML
Sbjct: 144 KPVQSPGPFLPGTSPRYVMSREEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNML 203
Query: 290 DNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRS 349
DNIHAHWKRRR CKIKC GVCTVDMDNVC+QLEE+TGGK+IYRRGGV+YLFRGRNYN+++
Sbjct: 204 DNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIYRRGGVIYLFRGRNYNHKT 263
Query: 350 RPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKN 409
RPRFPLMLWKPV PVYPRLIQQVP+GLTLEEATEMR+KGR L PICKLGKNGVY +L N
Sbjct: 264 RPRFPLMLWKPVPPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNN 323
Query: 410 VREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILK 469
VREAFE CELVR+NCQG+N SDYRKIGAKLRDLVPC L+S+E EHILMWRG+ WKSS
Sbjct: 324 VREAFEECELVRVNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPD 383
Query: 470 PGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQS 529
D ++A ++ D N + +L + +L+ S++ E V +
Sbjct: 384 LVEDFKEATKADAD-----------NKNDKTL------QSEALDVSTPSLNHNPVEHVSN 426
Query: 530 ALRENLSSIDGEEPFSVTKKLSFADDNEQLSADESLSLADDDE-------PFSDSENLSS 582
LS D S+S DD P +S+ S
Sbjct: 427 -----------------------------LSHDTSISFCPDDVTVDKVPCPTKNSKQSMS 457
Query: 583 ADDDEPFLASDSTTNVMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVS 642
+A S T V E T AT S + ++ N + +S S +S
Sbjct: 458 V------VADASLTKVYEAETTNVATD-SYGEPESCSNTSPGMTISHDSRHTECPSNAIS 510
Query: 643 DTNECQTVLDNKGSVLGESAALSV-GSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEV 701
D++ ++D+KG G+ + S+ GS LGS S + + L +D
Sbjct: 511 DSHGTSDIMDDKG--FGDCLSTSISGSNAMLGSRNSNIYGTVDPHADELLNDSGA----- 563
Query: 702 PEDHNVLTRLHGPSLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPV 761
D + L R P ++ + L+ QAVE G+ALVLD +LDAD++Y +V+FA+SAPPGPV
Sbjct: 564 -ADVSPLPRAAAPFMKGISLLLEQAVEQGNALVLDKDSLDADNVYRTTVSFAQSAPPGPV 622
Query: 762 FQQRSRKIAIQKGEKKEA---GHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGL 818
F + RK+A+QK +K+EA + +G +S R + K + + E +
Sbjct: 623 F-MKHRKVAVQKSDKQEALTPETRETTTVTTKGTTVATKGKRERSPRIRRKENFD-ERFM 680
Query: 819 DVVLSPQGSLKIDELAKLLA 838
++V PQG+L +DELAKLL
Sbjct: 681 NLV--PQGTLGVDELAKLLT 698
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/486 (60%), Positives = 366/486 (75%), Gaps = 27/486 (5%)
Query: 1 MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED 60
+ LK+ I PIFSPP + PNP R +TE+RFSRWNNANAE+FN+RRR QEIED
Sbjct: 3 VLLKVAIQLPIFSPP------VCPNPTRDRCSTELRFSRWNNANAEKFNRRRRTIQEIED 56
Query: 61 DIRRHRRFDSATKITQSYDSSTSTATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNSS 120
+I R RRF +A IT + ++ S A FKS GTPS+PS+PSIPG+KSKYSKP
Sbjct: 57 EICRTRRFTAADNITNTAFAADSAAAAE-TFKSLGTPSAPSQPSIPGKKSKYSKPPPKPK 115
Query: 121 V---DHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 177
HP + + E PE N+ I +DG+SYV+DGAPFEF++SYTE P
Sbjct: 116 PLLDSHPVVSRAASLE--FRPGPE-------NVRIGDDGVSYVVDGAPFEFRFSYTETPN 166
Query: 178 AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 237
AKP+KLRE F+PFGP ++ RPWTGR P+PPSK +K+F + LPPP+++ V+PV+ GP
Sbjct: 167 AKPVKLREPPFAPFGPASLPRPWTGRNPVPPSKTTVKDFHALALPPPDEEEVQPVRLAGP 226
Query: 238 YLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWK 297
+R+E+LGEPLT DE+ L+++ ++SSRQLN+GRDGLTHNML+NIH +W
Sbjct: 227 VW--------ESRDEVLGEPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWM 278
Query: 298 RRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLML 357
RR ACKIKC+GVCTVDMDNVC+QLEERTGGKIIYR+ G +YLFRG+NYNY +RPRFP M
Sbjct: 279 RRSACKIKCRGVCTVDMDNVCQQLEERTGGKIIYRQAGTVYLFRGKNYNYETRPRFPFMR 338
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC 417
WKPV+PVYPRLI++VP+GLTLE+ATEMR+KGR L+PICKLGKNGVY DL N+REAFE C
Sbjct: 339 WKPVSPVYPRLIKRVPEGLTLEKATEMRQKGRDLMPICKLGKNGVYWDLVTNIREAFEEC 398
Query: 418 ELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDA 477
ELVRINCQ +N SDYR+IGAKL+DLVPC L+SFE +HILMWRGQ W+ S+ P +D ++A
Sbjct: 399 ELVRINCQELNTSDYRRIGAKLKDLVPCALLSFENDHILMWRGQNWRPSLPDPRDDDKEA 458
Query: 478 KESKVD 483
+ VD
Sbjct: 459 NKINVD 464
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 717 EIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKGEK 776
E +L L+ QAVE GSALVLDD LD D +Y+ +VAFAKS PP PV++ +++ I K E+
Sbjct: 592 EGILSLLEQAVEKGSALVLDDEFLDDDLLYQTTVAFAKSTPPEPVYKL-PKQVVIVKSER 650
Query: 777 KEAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKIDELAKL 836
+E L+ + E+ ++ + N R+K E G VL P ++ +D+LA L
Sbjct: 651 QEGLTLETE-EITSVTRIGEKMNKSSKIRRK-----EYGRGSLNVLVPHRTINVDKLAIL 704
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 338/723 (46%), Positives = 449/723 (62%), Gaps = 78/723 (10%)
Query: 123 HPAFRKISKREKTTNKSPE--KPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKP 180
HPAF + + PE +PAA + +TE GL+Y +DGAPFEF+YSYTE P+A+P
Sbjct: 50 HPAFSSVIRGRPKKVPIPENGEPAA---GVRVTERGLAYHLDGAPFEFQYSYTETPRARP 106
Query: 181 LKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLP 240
+ LREA F PFGP RPWTGR PLP S+K+L EFDSF LPPP KKGVKPVQ PGP+L
Sbjct: 107 VALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLA 166
Query: 241 GTGPRY-VSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
GT PRY ++REE+LGEPLT +EV ELV++ ++ RQLN+GRDGLTHNML+NIH+HWKR+
Sbjct: 167 GTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRK 226
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
R CKIKCKGVCTVDMDNVC+QLEE+ GGK+I+ +GGV++LFRGRNYNYR+RP +PLMLWK
Sbjct: 227 RVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWK 286
Query: 360 PVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCEL 419
P PVYPRL++++PDGLT +EA +MRK+GR+L PICKLGKNGVY +L K VREAFE C+L
Sbjct: 287 PAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDL 346
Query: 420 VRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKE 479
VR++C G+N SD RKIGAKL+DLVPC L+SFE EHILMWRG +WKSS+ P + D K
Sbjct: 347 VRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSL--PPLEENDFK- 403
Query: 480 SKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSID 539
V + AG+GSA LT + LV N++ S K + NL I+
Sbjct: 404 --VASDQILNSKEAGSGSA--LTPIELV--------NNATSLK---------KCNL--IE 440
Query: 540 GEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTNVM 599
G E + K SF + SA + + + E +E SSAD F S+S + +
Sbjct: 441 GAEKLEDSMKSSFENGMILGSACANPGVCNS-EGIDGTE--SSADAPIEFSPSNSARD-L 496
Query: 600 EINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKGSVLG 659
+ ++T S C + D +N + ++ GN P D E T L
Sbjct: 497 DPSQT-STLYCQSSLLDKSEN--GELIEMYPDRCGNSEQSP--DVPEALTCL-------- 543
Query: 660 ESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLEIV 719
+GS + E+ R +H GS D + S VP +E +
Sbjct: 544 ------MGSSDEIHELETMRRNCKHLN-GS---DGVNSDSIVPS-----------YMEGI 582
Query: 720 LHLMRQAVENGSALVLDDATL-DADSIYERSVAFAKSAPPGPVFQQRSRKI-AIQKGEKK 777
L L +QA+++G ALVL++ DA+ +Y++SVAF K+AP V + RK QK E
Sbjct: 583 LLLFKQAIDSGMALVLNENEFADANYVYQKSVAFTKTAPRYLVLRHTPRKSHGTQKTEP- 641
Query: 778 EAGHLKMKREVPNMVVSEN--RGNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKIDELAK 835
A ++++ + + VS++ + + + +N E DVV PQG+L++DELAK
Sbjct: 642 -AKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRNDHAREFLSDVV--PQGTLRVDELAK 698
Query: 836 LLA 838
LLA
Sbjct: 699 LLA 701
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 339/727 (46%), Positives = 450/727 (61%), Gaps = 86/727 (11%)
Query: 123 HPAFRKISKREKTTNKSPE--KPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKP 180
HPAF + + PE +PAA + +TE GL+Y +DGAPFEF+YSYTE P+A+P
Sbjct: 50 HPAFSSVIRGRPKKVPIPENGEPAA---GVRVTERGLAYHLDGAPFEFQYSYTETPRARP 106
Query: 181 LKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLP 240
+ LREA F PFGP RPWTGR PLP S+K+L EFDSF LPPP KKGVKPVQ PGP+L
Sbjct: 107 VALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLA 166
Query: 241 GTGPRY-VSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
GT PRY ++REE+LGEPLT +EV ELV++ ++ RQLN+GRDGLTHNML+NIH+HWKR+
Sbjct: 167 GTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRK 226
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
R CKIKCKGVCTVDMDNVC+QLEE+ GGK+I+ +GGV++LFRGRNYNYR+RP +PLMLWK
Sbjct: 227 RVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWK 286
Query: 360 PVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCEL 419
P PVYPRL++++PDGLT +EA +MRK+GR+L PICKLGKNGVY +L K VREAFE C+L
Sbjct: 287 PAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDL 346
Query: 420 VRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKE 479
VR++C G+N SD RKIGAKL+DLVPC L+SFE EHILMWRG +WKSS+ P + D K
Sbjct: 347 VRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSL--PPLEENDFK- 403
Query: 480 SKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSID 539
V + AG+GSA LT + LV N++ S K + NL I+
Sbjct: 404 --VASDQILNSKEAGSGSA--LTPIELV--------NNATSLK---------KCNL--IE 440
Query: 540 GEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENL----SSADDDEPFLASDST 595
G E + K SF +N + L A + +SE + SSAD F S+S
Sbjct: 441 GAEKLEDSMKSSF--ENGMI-----LGSACGNPGVCNSEGIDGTESSADAPIEFSPSNSA 493
Query: 596 TNVMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKG 655
+ ++ ++T S C + D +N + ++ GN P D E T L
Sbjct: 494 RD-LDPSQT-STLYCQSSLLDKSEN--GELIEMYPDRCGNSEQSP--DVPEALTCL---- 543
Query: 656 SVLGESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPS 715
+GS + E+ R +H GS D + S VP
Sbjct: 544 ----------MGSSDEIHELETMRRNCKHLN-GS---DGVNSDSIVPS-----------Y 578
Query: 716 LEIVLHLMRQAVENGSALVLDDATL-DADSIYERSVAFAKSAPPGPVFQQRSRKI-AIQK 773
+E +L L +QA+++G ALVL++ DA+ +Y++SVAF K+AP V + RK QK
Sbjct: 579 MEGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAFTKTAPRYLVLRHTPRKSHGTQK 638
Query: 774 GEKKEAGHLKMKREVPNMVVSEN--RGNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKID 831
E A ++++ + + VS++ + + + +N E DVV PQG+L++D
Sbjct: 639 TEP--AKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRNDHAREFLSDVV--PQGTLRVD 694
Query: 832 ELAKLLA 838
ELAKLLA
Sbjct: 695 ELAKLLA 701
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 333/741 (44%), Positives = 441/741 (59%), Gaps = 113/741 (15%)
Query: 123 HPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLK 182
HPAF + + + PAA + +T+ GL+Y ++GAPFEF+YSYTEAP+A+P+
Sbjct: 50 HPAFSQRRRAKTIPILDTGDPAAG---VRVTDRGLAYHLEGAPFEFQYSYTEAPRARPVA 106
Query: 183 LREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGT 242
LREA F PFGP RPWTGR PLP S+K+L EFDSF LPP KKGVKPVQ PGP+L G
Sbjct: 107 LREAPFLPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPPHGKKGVKPVQSPGPFLAGM 166
Query: 243 GPRY-VSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRA 301
PRY +REE+LGEPL+ +EV ELV+ ++ RQLN+GRDGLTHNML+NIHAHWKR+R
Sbjct: 167 EPRYQAQSREEVLGEPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRV 226
Query: 302 CKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPV 361
CKIKCKGVCTVDMDNVC+QLEER GGK+I+R+GGV++LFRGRNYNYR+RP FPLMLWKP
Sbjct: 227 CKIKCKGVCTVDMDNVCQQLEERVGGKVIHRQGGVVFLFRGRNYNYRTRPVFPLMLWKPA 286
Query: 362 TPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVR 421
PVYPRL++ VPDGLT +EATEMRKKGR+L P+CKLGKNGVY +L VREAFE C+LVR
Sbjct: 287 APVYPRLVKTVPDGLTSDEATEMRKKGRQLTPVCKLGKNGVYANLVNEVREAFEACDLVR 346
Query: 422 INCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKESK 481
++C G+N SD RKIGAKL+DLVPC+L+SFE EHILM W+ GND
Sbjct: 347 VDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILM-----WR------GNDWR------ 389
Query: 482 VDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSIDGE 541
S PP+ + Q L LN ++V + L+SID
Sbjct: 390 -----SSLPPSEEDNFEAGSEQPLFTGKEILN-----------KKVTDSGVAALTSID-- 431
Query: 542 EPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASD----STTN 597
V K ++ + SL + D L D EP LA+D S +
Sbjct: 432 ----VVKNATYVKNT---------SLGEGD--------LYMEDPLEPNLANDAMLSSPST 470
Query: 598 VMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVL--DNKG 655
V + ++ + G +D +KN ++ S + Q++L D+K
Sbjct: 471 VSGLCDSKAVAGTEPSVTDPLKN-----------STSDEASRSLKSALYRQSILSDDSKN 519
Query: 656 SVLGESAALSVGSETTLGSAESTRDQSEHFYVGSLN----HDYQQNPSEVPEDHNVLTRL 711
L + + G +++ +G LN +D + ED N L +
Sbjct: 520 GELVQKSPDKCGKSKEYSELKAS--------LGPLNTVDENDKLETTRRNNEDINGLDGV 571
Query: 712 HGPS----LEIVLHLMRQAVENGSALVLDD-ATLDADSIYERSVAFAKSAPPGPVFQQRS 766
S +E VL L++QA ++G A +LD+ +DAD IY++S AFAK+AP GP+FQ
Sbjct: 572 KSDSKLSYMEGVLLLLKQATDSGRAHILDENEFVDADVIYQKSFAFAKAAPRGPIFQNSQ 631
Query: 767 RK-IAIQKGEKKEAGHLKMKR-----EVPNMVVSE---NRGNVRQSNRKKTKNSDEIEHG 817
RK + ++K E + H+++K+ EVP VV + N+G +QS+ E
Sbjct: 632 RKLVGVRKNEPDK--HVRIKKHAAENEVPCNVVKKDDVNKGLGKQSSYHAK------EFL 683
Query: 818 LDVVLSPQGSLKIDELAKLLA 838
DVV PQG+L++DELAKLL+
Sbjct: 684 SDVV--PQGTLRVDELAKLLS 702
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/401 (71%), Positives = 323/401 (80%), Gaps = 20/401 (4%)
Query: 1 MALKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIED 60
MALK +IPFPI L P+ P+HRPA+E+RFSRWNNANAE F R RAQ+EIED
Sbjct: 1 MALKTLIPFPI----------LAPSNPSHRPASEVRFSRWNNANAERFTLRERAQKEIED 50
Query: 61 DIRRHRRFDSATKITQSYDSSTST-ATNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATNS 119
+IRR RRFDSAT+I D+ TS A FKS GTPSSPS+PSIPG+ SKYS NS
Sbjct: 51 NIRRERRFDSATRIADIDDAGTSKEAAAAGTFKSTGTPSSPSKPSIPGKSSKYS---KNS 107
Query: 120 SVDHPAFRKISKREKTT--NKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 177
HPAFR+IS+R K N SPE +K ISI EDG+SY++ G PFE +YSYTE PK
Sbjct: 108 KTSHPAFRQISRRTKLPGPNISPE----AKRGISIGEDGVSYMVPGVPFELRYSYTETPK 163
Query: 178 AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 237
KP+ LRE F PFGP TM RPWTGRAPLPPSKKKLKEFDSFQLPPP KK VKPVQ PGP
Sbjct: 164 VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLPPPGKKRVKPVQAPGP 223
Query: 238 YLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWK 297
+LPG+GPRYV +REEILGEPLT +E++ELV+ +S RQLNMGRDGLTHNMLDNIHAHWK
Sbjct: 224 FLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWK 283
Query: 298 RRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLML 357
RRR CKIKCKGVCTVDMDNV +QLEE+TGGK+IY +GGVL+LFRGRNYNYR+RPRFPLML
Sbjct: 284 RRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNYNYRNRPRFPLML 343
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLG 398
WKPVTPVYPRL+Q+ P+GLTLEEA MRKKGRKLIPICKLG
Sbjct: 344 WKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLG 384
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/416 (60%), Positives = 315/416 (75%), Gaps = 18/416 (4%)
Query: 85 ATNGVAFKSAGTPSSPSRPSIPGRK----SKYSKPATN------SSVDHPAFRKISK--R 132
AT + +S P+ S P +P S + +P T ++ HPAF ++
Sbjct: 2 ATAPLPSRSLLAPAHQSHPRLPATLRLCLSHHKQPPTGPKRPRRAATSHPAFSAPARGRA 61
Query: 133 EKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFG 192
+K ++PAA + +T+ GLSY +DGAPFEF+YSYTEAP+A+P+ LREA F PFG
Sbjct: 62 KKIPVADTDEPAA---GVRVTDRGLSYRLDGAPFEFQYSYTEAPRARPVALREAPFLPFG 118
Query: 193 PTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS-TRE 251
P RPWTGR PLP S+K+L EFDSF LPPP KKGVKPVQ PGP+L G PRY S +RE
Sbjct: 119 PEATPRPWTGRKPLPKSRKELPEFDSFVLPPPGKKGVKPVQSPGPFLAGMEPRYQSVSRE 178
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
+ILGEPLT +EV ELV+ + ++ RQLNMGRDGLTHNML+NIH+HWKR+R CKIKCKGVCT
Sbjct: 179 DILGEPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 312 VDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQ 371
VDMDN+C+QLEE+ GGK+I+R+GGV++LFRGRNYNYR+RP FPLMLWKPV PVYPRL+ +
Sbjct: 239 VDMDNICQQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTK 298
Query: 372 VPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSD 431
VP GLT +EATEMR +GR+L PICKLGKNGVY +L K VREAFE C+LVR++C G+N SD
Sbjct: 299 VPGGLTPDEATEMRARGRQLPPICKLGKNGVYANLVKQVREAFEACDLVRVDCSGLNKSD 358
Query: 432 YRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKESKVDGSIS 487
RKIGAKL+DLVPC+L+SFE EHILMWRG +WKSS+ P + + +KV S+S
Sbjct: 359 CRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSL--PPLEENSFEVAKVQESLS 412
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 20/133 (15%)
Query: 716 LEIVLHLMRQAVENGSALVL-DDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAIQKG 774
+E +L L+ QA+++G ALVL +D +D+D +YE+SVAF KS P +F+ RK + ++
Sbjct: 552 IEGLLCLLEQAIDSGRALVLSEDELVDSDLVYEKSVAFTKSIPRRLIFEHTQRKSSARRN 611
Query: 775 EKKEAGHLKMKREVPNMVVSE--------NRGNVRQSNRKKTKNSDEIEHGL-DVVLSPQ 825
+K K V N + S N G+ Q+N D + L DVV PQ
Sbjct: 612 GPDNHARIK-KHLVENKLSSSHVEKKCVANVGSAMQTN-------DHAQEFLSDVV--PQ 661
Query: 826 GSLKIDELAKLLA 838
G+L++DELAKLLA
Sbjct: 662 GTLRVDELAKLLA 674
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/396 (61%), Positives = 303/396 (76%), Gaps = 16/396 (4%)
Query: 85 ATNGVAFKSAGTPSSPSRPSIPGRK----SKYSKPATN------SSVDHPAFRKISK--R 132
AT + +S +P+ S P +P S + +P T ++ HPAF ++
Sbjct: 2 ATARLPSRSFLSPAQQSYPRLPASVRLCLSHHEQPPTGPKRHRRAATSHPAFSAAARGRA 61
Query: 133 EKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFG 192
+K ++PAA + +T+ G+SY +DGAPFEF+YSYTEAP+A+P+ LREA F PFG
Sbjct: 62 KKIPIADTDEPAA---GVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFG 118
Query: 193 PTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS-TRE 251
P RPWTGR PLP S+K+L EFDSF LP P KKGVKPVQ PGP+L G PRY S +RE
Sbjct: 119 PEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSRE 178
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
+ILGEPLT +EV ELV+ + +S RQLNMGRDGLTHNML+NIH+HWKR+R CKIKCKGVCT
Sbjct: 179 DILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 312 VDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQ 371
+DMDN+C QLEE+ GGK+I+R+GGV++LFRGRNYNYR+RP FPLMLWKPV PVYPRL+ +
Sbjct: 239 IDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTK 298
Query: 372 VPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSD 431
VP GLT +EATEMR +G +L PICKLGKNGVY +L VREAFE C+LVR++C G+N SD
Sbjct: 299 VPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSD 358
Query: 432 YRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSI 467
RKIGAKL+DLVPC+L+SFE EHILMWRG +WKSS+
Sbjct: 359 CRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSL 394
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 713 GPSLEIVLHLMRQAVENGSALVL-DDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAI 771
G +E +L L+ QA+ +G ALVL +D D+D +YE+SVAF KS P VF+ RK +
Sbjct: 549 GSKVEGLLCLLEQAIHSGRALVLSEDELADSDLVYEKSVAFTKSIPRRLVFENTRRKSSA 608
Query: 772 QKGEKKEAGHLKMKREVPNMVVS--ENRGNVRQSNRKKTKNSDEIEHGLDVV--LSPQGS 827
++ K M+ S EN+ V + +T I+HG + + + QG+
Sbjct: 609 RRNVPDNHARTKTHLVENKMLSSPVENKFIVNGGSAMQT-----IDHGQEFLSDVVHQGT 663
Query: 828 LKIDELAKLLA 838
L++DELAKLLA
Sbjct: 664 LRVDELAKLLA 674
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/349 (60%), Positives = 263/349 (75%), Gaps = 6/349 (1%)
Query: 123 HPAFRKISKREKTTNKSPEKPAASKSN----ISITEDGLSYVIDGAPFEFKYSYTEAPKA 178
+PA + +R K P K SN + I + G+SY++ GAPFEF+YSY+E P
Sbjct: 105 NPALKTFHRRSKYYK--PVKDGVISSNGERAVVIGDSGVSYLLPGAPFEFQYSYSETPNV 162
Query: 179 KPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPY 238
KP+ +RE AF PF P TM RPWTG+APL SKKK+ FDSF PPP KGVK VQ PGP+
Sbjct: 163 KPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKQVQLPGPF 222
Query: 239 LPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKR 298
G P+ +REEILGEPL E+R LV+ +RQ+N+GRDGLTHNML+ IH+HWKR
Sbjct: 223 PLGQYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKR 282
Query: 299 RRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLW 358
+R CK++CKGV TVDMDN+C +EE+TGGKII+R GGVLYLFRGRNYNYR+RP++P+MLW
Sbjct: 283 QRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLW 342
Query: 359 KPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCE 418
KP PVYP+LIQ+ P+GLT EEA E+R KG+ L+PICKL KNGVY L +VR AFE
Sbjct: 343 KPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSI 402
Query: 419 LVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSI 467
LV+I+C GM+ SDY+K+GAKL++LVPCVL+SF+ E ILMWRG++WKS I
Sbjct: 403 LVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVI 451
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 201/279 (72%), Positives = 237/279 (84%), Gaps = 1/279 (0%)
Query: 190 PFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS- 248
PFGP RPWTGR PLP S+K+L EFDSF LP P KKGVKPVQ PGP+L G PRY S
Sbjct: 2 PFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSV 61
Query: 249 TREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKG 308
+RE+ILGEPLT +EV ELV+ + +S RQLNMGRDGLTHNML+NIH+HWKR+R CKIKCKG
Sbjct: 62 SREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 121
Query: 309 VCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRL 368
VCT+DMDN+C QLEE+ GGK+I+R+GGV++LFRGRNYNYR+RP FPLMLWKPV PVYPRL
Sbjct: 122 VCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRL 181
Query: 369 IQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMN 428
+ +VP GLT +EATEMR +G +L PICKLGKNGVY +L VREAFE C+LVR++C G+N
Sbjct: 182 VTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLN 241
Query: 429 GSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSI 467
SD RKIGAKL+DLVPC+L+SFE EHILMWRG +WKSS+
Sbjct: 242 KSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSL 280
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 713 GPSLEIVLHLMRQAVENGSALVL-DDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAI 771
G +E +L L+ QA+ +G ALVL +D D+D +YE+SVAF KS P VF+ RK +
Sbjct: 435 GSKVEGLLCLLEQAIHSGRALVLSEDELADSDLVYEKSVAFTKSIPRRLVFENTRRKSSA 494
Query: 772 QKGEKKEAGHLKMKREVPNMVVS--ENRGNVRQSNRKKTKNSDEIEHGLDVV--LSPQGS 827
++ K M+ S EN+ V + +T I+HG + + + QG+
Sbjct: 495 RRNVPDNHARTKTHLVENKMLSSPVENKFIVNGGSAMQT-----IDHGQEFLSDVVHQGT 549
Query: 828 LKIDELAKLLA 838
L++DELAKLLA
Sbjct: 550 LRVDELAKLLA 560
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/360 (59%), Positives = 269/360 (74%), Gaps = 4/360 (1%)
Query: 108 RKSKYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKSN--ISITEDGLSYVIDGAP 165
+ K S+P T PAF+ + R K + AS + + I E G+SY++ GAP
Sbjct: 46 KSQKSSRPPTKPPT--PAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAP 103
Query: 166 FEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPN 225
FEF++SY+E PKAKPL +RE AF PF P TM RPWTG+APL SKKK+ FDSF PPP
Sbjct: 104 FEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPG 163
Query: 226 KKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLT 285
KGVK V+ PGP+ G P TREEILGEPL+ E+R LV+ +RQ+N+GRDGLT
Sbjct: 164 TKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLT 223
Query: 286 HNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
HNML+ IH+HWKR+R CK++CKGV T+DMDNVC LEE+TGGKII+R GGV+YLFRGRNY
Sbjct: 224 HNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNY 283
Query: 346 NYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCD 405
NYR+RP++P+MLWKP PVYP+LIQ+ P+GLT EA E+R KG+ LIPIC+L KNGVY
Sbjct: 284 NYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYIS 343
Query: 406 LAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKS 465
L K+VR+AFE LV+I+C+GM+ SDY+KIGAKL++LVPCVL+SF+ E IL WRG WKS
Sbjct: 344 LVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKS 403
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/318 (63%), Positives = 251/318 (78%)
Query: 150 ISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPS 209
+ I + G+SY + GAPFEF+YSY+E PK KP+ +RE AF PF P TM RPWTG+APL S
Sbjct: 134 VVIGDSGVSYHLPGAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSS 193
Query: 210 KKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVES 269
KKK+ FDSF PPP KGVK VQ PGP+ G P+ +REEILGEPL E+R LV+
Sbjct: 194 KKKIPLFDSFNPPPPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLVKP 253
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
+RQ+N+GRDGLTHNML+ IH+HWKR+R CK++CKGV TVDMDN+C +EE+TGGKI
Sbjct: 254 HLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI 313
Query: 330 IYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGR 389
I+R GGVLYLFRGRNYNYR+RP++P+MLWKP PVYP+LIQ+ P+GLT +EA +R KG+
Sbjct: 314 IHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGK 373
Query: 390 KLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLIS 449
L+PICKL KNGVY L +VR AFE LV+I+C GM+ SDY+K+GAKL++LVPCVL+S
Sbjct: 374 NLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 433
Query: 450 FEREHILMWRGQEWKSSI 467
F+ E ILMWRG++WKS I
Sbjct: 434 FDNEQILMWRGKDWKSII 451
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/318 (63%), Positives = 251/318 (78%)
Query: 150 ISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPS 209
+ I + G+SY + GAPFEF+YSY+E PK KP+ +RE AF PF P TM RPWTG+APL S
Sbjct: 133 VVIGDSGVSYHLPGAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSS 192
Query: 210 KKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVES 269
KKK+ FDSF PPP KGVK VQ PGP+ G P+ +REEILGEPL E+R LV+
Sbjct: 193 KKKIPLFDSFNPPPPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLVKP 252
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
+RQ+N+GRDGLTHNML+ IH+HWKR+R CK++CKGV TVDMDN+C +EE+TGGKI
Sbjct: 253 HLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI 312
Query: 330 IYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGR 389
I+R GGVLYLFRGRNYNYR+RP++P+MLWKP PVYP+LIQ+ P+GLT +EA +R KG+
Sbjct: 313 IHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGK 372
Query: 390 KLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLIS 449
L+PICKL KNGVY L +VR AFE LV+I+C GM+ SDY+K+GAKL++LVPCVL+S
Sbjct: 373 NLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 432
Query: 450 FEREHILMWRGQEWKSSI 467
F+ E ILMWRG++WKS I
Sbjct: 433 FDNEQILMWRGKDWKSII 450
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 199/317 (62%), Positives = 251/317 (79%)
Query: 149 NISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPP 208
++ + + G+SY++ GAPFEF++SY+E PK KPL +RE AF PF P TM RPWTG+ PL
Sbjct: 33 SVLVGDSGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKPPLKT 92
Query: 209 SKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVE 268
SKKK+ FDSF PP KKGVK V+ PGPY G P +REEILGEPL E++ L++
Sbjct: 93 SKKKIPVFDSFNPPPAGKKGVKYVEMPGPYPFGKFPEEGKSREEILGEPLKTWEIKLLIK 152
Query: 269 SAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGK 328
+RQ+N+G DGLTHNML+ +H+HWKRRR CK++CKGV TVDMDNVC LEE+TGGK
Sbjct: 153 PHLSDNRQVNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGK 212
Query: 329 IIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKG 388
II+R GGV+YLFRGRNYNYR+RP++P+MLWKP TPVYP+LIQ+ P+GLT +A E RKKG
Sbjct: 213 IIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEFRKKG 272
Query: 389 RKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLI 448
+ L+PICKL KNGVY L ++VR AFE LV+++C+GM SDY+K+GAKL+DLVPCVL+
Sbjct: 273 KNLLPICKLAKNGVYITLVRDVRAAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLL 332
Query: 449 SFEREHILMWRGQEWKS 465
SF+ E ILMWRGQ+WKS
Sbjct: 333 SFDDEQILMWRGQDWKS 349
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/360 (59%), Positives = 266/360 (73%), Gaps = 4/360 (1%)
Query: 108 RKSKYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKSN--ISITEDGLSYVIDGAP 165
+ K +P T S PAF+ + R K + AS + + I E G+SY++ GAP
Sbjct: 46 KSQKSPRPPTKPST--PAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLAGAP 103
Query: 166 FEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPN 225
FEF++SY+E PKAKPL +RE AF PF P TM RPWTG+APL SKKK+ FDSF PPP
Sbjct: 104 FEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPG 163
Query: 226 KKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLT 285
KGVK V+ PGP+ G P TREEILGEPL+ E+R LV+ +RQ+N+GRDGLT
Sbjct: 164 TKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLT 223
Query: 286 HNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
HNML+ IH+HWKR+R CK+ CKGV T+DMDNVC LEE+TGGKII+R GGV+YLFRGRNY
Sbjct: 224 HNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNY 283
Query: 346 NYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCD 405
NYR+RP++P+MLWKP PVYP+LIQ+ P+GLT EA E+R KG LIPIC+L KNGVY
Sbjct: 284 NYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGXNLIPICRLVKNGVYIS 343
Query: 406 LAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKS 465
L K+VR+AFE LV+I+C+GM+ SDY+KIGAKL++ VPCVL+SF+ E IL WRG WKS
Sbjct: 344 LVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKESVPCVLLSFDDEQILTWRGHGWKS 403
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/322 (62%), Positives = 250/322 (77%), Gaps = 1/322 (0%)
Query: 150 ISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPS 209
+ I E G+SY++ GAPFEF++SY+E PKAKP+ +RE AF PF P TM RPWTG+APL
Sbjct: 88 VVIGESGVSYLLPGAPFEFQFSYSETPKAKPIAIREPAFLPFAPPTMPRPWTGKAPLKGK 147
Query: 210 K-KKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVE 268
K KK+ FDSF PP KGVK V+ PGP+ G P +REEILGEPL E+ LV+
Sbjct: 148 KSKKVPLFDSFNPPPAGTKGVKLVEMPGPFPMGQFPLEGKSREEILGEPLKKWEIHMLVK 207
Query: 269 SAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGK 328
+RQ+N+GRDGLTHNML+ IH+HWKRRR CKI+C GV TVDMDNVC +EE+TGGK
Sbjct: 208 PMMSYNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGK 267
Query: 329 IIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKG 388
II+R GGV+YLFRGRNYNY +RP++P+MLWKP PVYP+LIQ P GLT +EA E+R KG
Sbjct: 268 IIHRVGGVVYLFRGRNYNYSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKDEADELRMKG 327
Query: 389 RKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLI 448
+ L+PICKL KNGVY L K+VR+AFE LV+INC+G++ SDY+KIGAKL+DLVPCVL+
Sbjct: 328 KSLLPICKLAKNGVYTSLVKDVRDAFEGSILVKINCKGLDPSDYKKIGAKLKDLVPCVLL 387
Query: 449 SFEREHILMWRGQEWKSSILKP 470
SF+ E ILMWRG++WKS +P
Sbjct: 388 SFDDEQILMWRGKDWKSRYPQP 409
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/320 (63%), Positives = 248/320 (77%)
Query: 149 NISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPP 208
I I E G+SY + GAPFEF++SY+E PKAKP+ +RE AF PF P TM RPWTG+APL
Sbjct: 96 TIVIGESGVSYQLPGAPFEFQFSYSETPKAKPVGIREPAFMPFAPPTMPRPWTGKAPLKK 155
Query: 209 SKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVE 268
SKKK+ FDSF PP K GVK V+ PGP G P+ REEILGEPL E L++
Sbjct: 156 SKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREEILGEPLKKWEKGMLIK 215
Query: 269 SAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGK 328
+RQ+N+GRDG THNML+ IH+HWKRRR CK++CKGV TVDMDNVC LEE+TGG+
Sbjct: 216 PHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGE 275
Query: 329 IIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKG 388
II+R GGV+YLFRGRNYNYR+RP++PLMLWKP PVYP+LIQ+VP+GLT EEA E R KG
Sbjct: 276 IIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEALEFRVKG 335
Query: 389 RKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLI 448
+ L PICKL KNGVY L K+VR+AFE+ LV+++C G+ SDY+KIGAKL++LVPCVL+
Sbjct: 336 KSLRPICKLSKNGVYVSLVKDVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLL 395
Query: 449 SFEREHILMWRGQEWKSSIL 468
SF+ E ILMWRG++WKS +
Sbjct: 396 SFDDEQILMWRGRDWKSRFV 415
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 195/295 (66%), Positives = 237/295 (80%)
Query: 168 FKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKK 227
++YSYTE PK P+ RE +SPFGP + RPWTGR PL SKKK +EFDSF PP +K
Sbjct: 1 YQYSYTETPKVAPVGFREPVYSPFGPEGVNRPWTGRPPLAKSKKKPREFDSFNPPPIGRK 60
Query: 228 GVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHN 287
GVKPVQ PGPY G GP+ +REEILG PLT+ EVRELV A++ RQ+N+GRDGLTHN
Sbjct: 61 GVKPVQAPGPYPEGQGPKLGRSREEILGAPLTSAEVRELVTKARKEPRQINLGRDGLTHN 120
Query: 288 MLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
ML+ +H HWKRRR CK+KCKGV TVDMDNVC LEE+TGGKII R+GG +YLFRGRNYNY
Sbjct: 121 MLNLVHEHWKRRRVCKVKCKGVPTVDMDNVCRVLEEKTGGKIILRQGGAVYLFRGRNYNY 180
Query: 348 RSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLA 407
++RP PLMLWKP P+YP+LI++ P GLT+EEA +RK GR+L P+C LGKNGVY +L
Sbjct: 181 KTRPVIPLMLWKPPAPIYPKLIEKAPAGLTIEEANNLRKLGRELPPVCHLGKNGVYVNLV 240
Query: 408 KNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQE 462
++VR AF+V +LV+++C+ MN SDY+KIGAKL+DLVPCVL+SFERE ILMWRG E
Sbjct: 241 RDVRNAFKVDDLVKVDCKNMNPSDYKKIGAKLKDLVPCVLLSFERESILMWRGPE 295
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/320 (62%), Positives = 247/320 (77%)
Query: 149 NISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPP 208
I I + G+SY + GAPFEF++SY+E PK KP+ +RE AF PF P TM RPWTG+APL
Sbjct: 94 TILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKK 153
Query: 209 SKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVE 268
SKKK+ FDSF PP K GVK V+ PGP G P+ REE+LGEPL E L++
Sbjct: 154 SKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIK 213
Query: 269 SAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGK 328
+RQ+N+GRDG THNML+ IH+HWKRRR CK++CKGV TVDM+NVC LEE+TGG+
Sbjct: 214 PHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGE 273
Query: 329 IIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKG 388
II+R GGV+YLFRGRNYNYR+RP++PLMLWKP PVYP+LIQ+VP+GLT EEA E R KG
Sbjct: 274 IIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKG 333
Query: 389 RKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLI 448
+ L PICKL KNGVY L K+VR+AFE+ LV+++C G+ SDY+KIGAKL++LVPCVL+
Sbjct: 334 KSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLL 393
Query: 449 SFEREHILMWRGQEWKSSIL 468
SF+ E ILMWRG+EWKS +
Sbjct: 394 SFDDEQILMWRGREWKSRFV 413
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/360 (56%), Positives = 261/360 (72%), Gaps = 7/360 (1%)
Query: 108 RKSKYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKS---NISITEDGLSYVIDGA 164
+KSK + A++S PAF+ +R K + S ++ + E+G+SY + GA
Sbjct: 43 KKSKNPQTASSS----PAFKLPHRRTKYYKPIKQDGVISSDGDRSVVVGENGVSYKLPGA 98
Query: 165 PFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPP 224
PFEF++SY+E PK KPL +RE AF PFGP TM RPWTG+APL SKKK S +P
Sbjct: 99 PFEFQFSYSETPKVKPLAIREPAFLPFGPPTMPRPWTGKAPLKKSKKKKIPLFSNSIPND 158
Query: 225 NKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGL 284
K+GVK + PG G P V +R EILG+PLT E+++LV+ +RQ+N+GRDGL
Sbjct: 159 AKEGVKYFEMPGDLQFGKFPEEVKSRREILGKPLTRWEIKQLVKPLLSDNRQVNLGRDGL 218
Query: 285 THNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRN 344
THNML+ IH+HW+R CK++CKG+ TVDM+N+C LEERTGGKIIYR GGV+YLF GRN
Sbjct: 219 THNMLELIHSHWRRSPVCKVRCKGIPTVDMNNICRHLEERTGGKIIYRIGGVVYLFCGRN 278
Query: 345 YNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYC 404
Y+YRSR R+P+MLWKP PVYP+LIQ P+GLT EA E R+KG+ L+PICKL KNGVY
Sbjct: 279 YDYRSRVRYPVMLWKPAAPVYPKLIQDAPEGLTKAEADEFREKGKNLLPICKLAKNGVYI 338
Query: 405 DLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWK 464
L ++VR AFE LV+I+C+GMN SDY+K+GAKL++LVPCVL+SF+ EHILMWRGQ WK
Sbjct: 339 TLVRDVRNAFEGSPLVKIDCKGMNPSDYKKLGAKLKELVPCVLLSFDDEHILMWRGQNWK 398
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/341 (54%), Positives = 246/341 (72%), Gaps = 18/341 (5%)
Query: 144 AASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGR 203
AAS + + GLS+ + GAPF+F++SY+EAP+A PL +RE AF PF P TM RPWTG+
Sbjct: 110 AASGRAVVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGK 169
Query: 204 APLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYL--------------PGTGPRYVST 249
APL ++K + P ++ + V G + PG G +
Sbjct: 170 APLLTKEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDG----RS 225
Query: 250 REEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGV 309
REE+LGEPLT EVR LV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV
Sbjct: 226 REEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGV 285
Query: 310 CTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLI 369
TVDM N+C LEE++GGK+I+R GGV++L+RGR+Y+ ++RPR+PLMLWKP TPVYP+LI
Sbjct: 286 PTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLI 345
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
++ PDG T EEA EMR+KGR L+PICKL KNG+Y L K+VR+AFE +LV+I+C+G+N
Sbjct: 346 KEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNP 405
Query: 430 SDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
SDY+KIGAKLRDLVPCVL+SF+ E ILM RG+EWKS KP
Sbjct: 406 SDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKP 446
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/395 (50%), Positives = 268/395 (67%), Gaps = 26/395 (6%)
Query: 97 PSSPSR---PSIPGRKSKYSKPATNSSVDHPAFRK----ISKREKTTNKSPEKPAASKSN 149
P PSR P +P +++ + PA S A+RK K E +P AA +S
Sbjct: 56 PQQPSREQEPPMPAPRARDTNPAFRSPHLRTAYRKPVPPAGKGEALLAANPTDAAAGRS- 114
Query: 150 ISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPS 209
+ + G+++ + GAPF+F++SY+EAP+A PL +RE F PF P TM RPWTG+APL
Sbjct: 115 VVVGPSGVTFRLPGAPFDFQFSYSEAPRAAPLAIREPPFLPFAPPTMPRPWTGKAPLLTK 174
Query: 210 KKKLKEFDSFQLPPPNKKGVKPVQKPGPYL--------------PGTGPRYVSTREEILG 255
++K + P ++ + V G + PG G R REE+LG
Sbjct: 175 EEKARRKGVRLHTPLGQESPQTVSPHGIMMEVRGRRQLDLGRVSPGDGRR----REEVLG 230
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
EPLT EVR LV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV TVDM
Sbjct: 231 EPLTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 290
Query: 316 NVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDG 375
N+C LEE++GGK+I+R GGV++L+RGRNYN R+RPR+PLMLWKP TPVYP+LIQ P+G
Sbjct: 291 NLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQLAPEG 350
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
LT+EEA EMR +G+ L+PI KL KNG+Y +L K+VR+AFE +LV+INC+G+ SDY+KI
Sbjct: 351 LTIEEAAEMRIRGQNLLPIFKLAKNGIYLNLVKDVRDAFEGNDLVKINCEGLEPSDYKKI 410
Query: 436 GAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
GAKLRDLVPC+L+SF+ E IL++RG+EWKS KP
Sbjct: 411 GAKLRDLVPCILLSFDNEQILIYRGKEWKSRYSKP 445
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/296 (61%), Positives = 227/296 (76%)
Query: 165 PFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPP 224
PFEF+Y+Y+E PK +P+ R FSPFGP TM RPWTGR PLPPSKKK E DSF PPP
Sbjct: 1 PFEFQYTYSEMPKEEPIAERGPQFSPFGPDTMPRPWTGRKPLPPSKKKRHEIDSFNPPPP 60
Query: 225 NKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGL 284
N KGVKPV+ GP+L G P +TREE++GEPLT DE+ +LV + + RQ+N+G+DGL
Sbjct: 61 NLKGVKPVEPAGPFLEGQRPILATTREEVMGEPLTPDEIGDLVLACNKEHRQVNIGKDGL 120
Query: 285 THNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRN 344
THNMLD IH HWKRRR K++CKGV T+DMDNVC +E++TGGKII R GG +YLFRGRN
Sbjct: 121 THNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRHGGSIYLFRGRN 180
Query: 345 YNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYC 404
YN R RP PLM+WKP P+YPRLIQQ P GL++E A +R++GR++ P+ KL +NGVY
Sbjct: 181 YNPRYRPEIPLMMWKPPVPIYPRLIQQAPAGLSVEHADYLRRRGRRVKPLTKLSRNGVYL 240
Query: 405 DLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
L V+ AFEV ELV+++C+GMN +D RKIGAKL++L+ VL+SFE +LMWRG
Sbjct: 241 HLVNEVKSAFEVDELVKLDCRGMNIADVRKIGAKLKELLGIVLLSFEDNCVLMWRG 296
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/331 (55%), Positives = 246/331 (74%), Gaps = 10/331 (3%)
Query: 150 ISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPS 209
+ + GLS+ + GAPF+F++SY+E P+A P+ +RE AF PF P TM RPWTG+APL
Sbjct: 114 VVVGPSGLSFRLPGAPFDFRFSYSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTK 173
Query: 210 KKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS----------TREEILGEPLT 259
++K + P ++ + V G + G R + +REE+LGEPLT
Sbjct: 174 EEKARRRGVRLHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLT 233
Query: 260 ADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCE 319
A EVR+LV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV TVDM N+C
Sbjct: 234 AAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCY 293
Query: 320 QLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLE 379
LEE++GGK+I+R GGV++L+RGRNYN R+RPR+PLMLWKP TPVYP+LIQ+ P+GLT E
Sbjct: 294 HLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKE 353
Query: 380 EATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKL 439
EA EMR++G+ L+PICKL KNG+Y L ++VR+AFE +LV+I+C+G+N SDY+KIGAKL
Sbjct: 354 EADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKL 413
Query: 440 RDLVPCVLISFEREHILMWRGQEWKSSILKP 470
RDLVPCVL+SF+ E ILM+RG+EWKS KP
Sbjct: 414 RDLVPCVLLSFDNEQILMFRGKEWKSRYPKP 444
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/381 (50%), Positives = 261/381 (68%), Gaps = 29/381 (7%)
Query: 117 TNSSVDHPAFRKISKREKTTNKSPEKPAASKSN-----------------ISITEDGLSY 159
T + +PAFR + +T + P P A+ + + GLS+
Sbjct: 64 TTGNGGNPAFR--APHLRTAYRKPVPPVAAAGEGEALLAADASDAADGRAVVVGPSGLSF 121
Query: 160 VIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSF 219
+ GAPF+F++SY+E P+A P+ +RE AF PF P TM RPWTG+APL ++K +
Sbjct: 122 RLPGAPFDFRFSYSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVR 181
Query: 220 QLPPPNKKGVKPVQKPGPYLPGTGPRYVS----------TREEILGEPLTADEVRELVES 269
P ++ + V G + G R + +REE+LGEPLTA EVR+LV+
Sbjct: 182 LHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKP 241
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
+RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV TVDM N+C LEE++GGK+
Sbjct: 242 HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV 301
Query: 330 IYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGR 389
I+R GGV++L+RGRNYN R+RPR+PLMLWKP TPVYP+LIQ+ P+GLT EEA EMR++G+
Sbjct: 302 IHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGK 361
Query: 390 KLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLIS 449
L+PICKL KNG+Y L ++VR+AFE +LV+I+C+G+N SDY+KIGAKLRDLVPCVL+S
Sbjct: 362 DLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 421
Query: 450 FEREHILMWRGQEWKSSILKP 470
F+ E ILM+RG+EWKS KP
Sbjct: 422 FDNEQILMFRGKEWKSRYPKP 442
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/341 (54%), Positives = 247/341 (72%), Gaps = 18/341 (5%)
Query: 144 AASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGR 203
AAS + + GLS+ + GAPF+F++SY+E P+A PL +RE AF PF P TM RPWTG+
Sbjct: 112 AASGRAVVVGPSGLSFRLPGAPFDFQFSYSEGPRAPPLAIREPAFVPFAPPTMPRPWTGK 171
Query: 204 APLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYL--------------PGTGPRYVST 249
APL ++K + P ++ + V G + PG G +
Sbjct: 172 APLLTKEEKARRRGVRLHTPLGQEPPQTVSAHGIMMEVRDRRQMDLARVSPGDG----RS 227
Query: 250 REEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGV 309
REE+LGEPLT EVR LV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV
Sbjct: 228 REEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGV 287
Query: 310 CTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLI 369
TVDM N+C LEE++GGK+I+R GGV++++RGR+Y+ ++RP +PLMLWKP TPVYP+LI
Sbjct: 288 PTVDMKNLCYHLEEKSGGKVIHRVGGVVFVYRGRHYDPKTRPHYPLMLWKPATPVYPKLI 347
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
++VP+GLT EEA EMR+KGR L+PICKL KNG+Y L K+VR+AFE +LV+I+C+G+N
Sbjct: 348 KEVPEGLTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGNDLVKIDCEGLNP 407
Query: 430 SDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
SDY+KIGAKLRDLVPCVL+SF+ E ILM+RG+EWKS KP
Sbjct: 408 SDYKKIGAKLRDLVPCVLLSFDDEQILMYRGKEWKSRYSKP 448
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/341 (54%), Positives = 245/341 (71%), Gaps = 18/341 (5%)
Query: 144 AASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGR 203
AAS + + GLS+ + GAPF+F++SY+EAP+A PL +RE AF PF P TM RPWTG+
Sbjct: 110 AASGRAVVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGK 169
Query: 204 APLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYL--------------PGTGPRYVST 249
APL ++K + P ++ + V G + PG G +
Sbjct: 170 APLLTKEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDG----RS 225
Query: 250 REEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGV 309
REE+LGEPLT EVR LV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV
Sbjct: 226 REEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGV 285
Query: 310 CTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLI 369
TVDM N+C LEE++GGK+I+R GGV++L+RGR+Y+ ++RPR+PLML KP TPVYP+LI
Sbjct: 286 PTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLRKPATPVYPKLI 345
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
++ PDG T EEA EMR+KGR L+PICKL KNG+Y L K+VR+AFE +LV+I+C+G+N
Sbjct: 346 KEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNP 405
Query: 430 SDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
SDY+KIGAKLRDLVPCVL+SF+ E ILM RG+EWKS KP
Sbjct: 406 SDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKP 446
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/389 (48%), Positives = 267/389 (68%), Gaps = 29/389 (7%)
Query: 109 KSKYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKS-----------------NIS 151
+ + + PA ++ +PAFR + +T+ + P PAA+ ++
Sbjct: 58 QEQAATPAPRATHANPAFR--APHLRTSYRKPVPPAAATGKGEALLTTDPTDAAAGRSVV 115
Query: 152 ITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKK 211
I G+++ + GAPF+F++SY+E P+A PL +RE F PF P TM RPWTG+APL ++
Sbjct: 116 IGPTGVTFRLPGAPFDFQFSYSEVPRAAPLAIREPPFLPFAPPTMPRPWTGKAPLLTKEE 175
Query: 212 KLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS----------TREEILGEPLTAD 261
K + P ++ + G + G R + +REE+LGEPLT+
Sbjct: 176 KARRRGVRLHTPLGQEPPRTASPHGVMMEVRGRRQLDFARVSLGDGRSREEVLGEPLTSA 235
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E RELV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV TVDM+N+C L
Sbjct: 236 ETRELVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNLCYHL 295
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEA 381
EE++GGK+I R GGV++L+RGRNYN R+RPR+PLMLWKP TPVYP+LIQQ P+GLT+EEA
Sbjct: 296 EEKSGGKVIKRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQQAPEGLTVEEA 355
Query: 382 TEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRD 441
EMR++G+ L+PI KL KNG+Y +L K+V++AFE +LV+I+C+G+ SDY+KIGAKLRD
Sbjct: 356 AEMRRRGQILLPILKLAKNGIYINLVKDVQDAFEGNDLVKIDCKGLEPSDYKKIGAKLRD 415
Query: 442 LVPCVLISFEREHILMWRGQEWKSSILKP 470
LVPCVL+SF++E IL++RG+ WKS LKP
Sbjct: 416 LVPCVLLSFDKEQILIYRGKGWKSRYLKP 444
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/310 (56%), Positives = 230/310 (74%), Gaps = 10/310 (3%)
Query: 171 SYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVK 230
Y+E P+A P+ +RE AF PF P TM RPWTG+APL ++K + P ++ +
Sbjct: 113 CYSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGEEAPR 172
Query: 231 PVQKPGPYLPGTGPRYVS----------TREEILGEPLTADEVRELVESAKRSSRQLNMG 280
V G + G R + +REE+LGEPLTA EVR+LV+ +RQLN+G
Sbjct: 173 TVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKPHISHNRQLNIG 232
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
RDGLTHNML+ IH HW+R+ CK++C+GV TVDM N+C LEE++GGK+I+R GGV++L+
Sbjct: 233 RDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLY 292
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNYN R+RPR+PLMLWKP TPVYP+LIQ+ P+GLT EEA EMR++G+ L+PICKL KN
Sbjct: 293 RGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKN 352
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
G+Y L ++VR+AFE +LV+I+C+G+N SDY+KIGAKLRDLVPCVL+SF+ E ILM+RG
Sbjct: 353 GIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRG 412
Query: 461 QEWKSSILKP 470
+EWKS KP
Sbjct: 413 KEWKSRYPKP 422
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 214/297 (72%), Gaps = 4/297 (1%)
Query: 168 FKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLK--EFDSFQLPPPN 225
+++SY+E PK PL RE +SPFG + RP+ GR KK++ + SF P +
Sbjct: 1 YQFSYSETPKETPLGYREPLYSPFGHEGVTRPYLGRPSKMKKTKKIRAESWGSFDSPRAD 60
Query: 226 KKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLT 285
K VKP+ + G + P P +R +ILG PLT EV ELV ++ RQLN+GRDG T
Sbjct: 61 KNDVKPIHRSGSH-PEPQP-LGKSRAKILGAPLTTAEVEELVMQCQKEDRQLNLGRDGFT 118
Query: 286 HNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
HNML ++H +WKRR+ +IKCKGV TVDMDNVC LE++TGGKII R GGV+YLFRGRNY
Sbjct: 119 HNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIISRAGGVVYLFRGRNY 178
Query: 346 NYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCD 405
NY +RP+ PLMLW+P PVYP+LIQ+ P+GLT+EEA +R++GRK+ IC LGKNGVY +
Sbjct: 179 NYNTRPKIPLMLWRPPAPVYPKLIQRAPEGLTVEEADSLRRRGRKIPAICHLGKNGVYLN 238
Query: 406 LAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQE 462
L ++VR AF+ LV+++C+ MN D RKIGAKL+DLVPCVL+SF+ E ILMW+G E
Sbjct: 239 LVRDVRNAFQADNLVKVDCEKMNTHDLRKIGAKLKDLVPCVLLSFDHECILMWKGPE 295
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 216/336 (64%), Gaps = 27/336 (8%)
Query: 134 KTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAFSPFG 192
K K P +P +S + G + PF+F+YSYTE+ P +P+ LRE +SPFG
Sbjct: 63 KKKQKPPYRPPSS-----LDRTGKKPLRSDLPFDFRYSYTESSPAVRPIGLREPKYSPFG 117
Query: 193 PTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREE 252
P + R WTG P K++ D + P +K + RE+
Sbjct: 118 PGLLDREWTGVC-APAVDPKVRSVDGKEDPKLEEKRRR------------------MREK 158
Query: 253 ILGEPLTADEVRELVESAKR--SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVC 310
LGEPLTA E + LVE +R + RQ+N+GRDGLTHNML++IH HWK A +IKC GV
Sbjct: 159 TLGEPLTAAERKILVEKCQRHRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVP 218
Query: 311 TVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQ 370
TVDM NVC QLE++T GK+I+R+GG+L L+RGRNY+ + RP PLMLW+P P+YPRLI+
Sbjct: 219 TVDMKNVCTQLEDKTSGKVIHRQGGLLVLYRGRNYHPKKRPVIPLMLWRPHEPIYPRLIK 278
Query: 371 QVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGS 430
V DGL++EE EMRK+G + + KL KNG Y L VR+AF EL+RI+CQG+
Sbjct: 279 TVIDGLSIEETKEMRKRGLAVPALTKLAKNGYYGSLVPMVRDAFLTDELIRIDCQGLERR 338
Query: 431 DYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSS 466
DY+KIG KLRD VPC+L++FE+E I++WRG+++K +
Sbjct: 339 DYKKIGCKLRDFVPCILVTFEKEQIVVWRGKDYKPT 374
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 308 bits (789), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 197/291 (67%), Gaps = 34/291 (11%)
Query: 169 KYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKG 228
++SY+E P PL RE +SPFGP M RPWTG+ P
Sbjct: 34 QFSYSEHPNIPPLGFREPVYSPFGPEGMARPWTGKQP----------------------- 70
Query: 229 VKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNM 288
GP+ +REEILGEPLT DEVRELV A R+L++G+DGLTHNM
Sbjct: 71 -----------NVEGPKLGRSREEILGEPLTKDEVRELVGRACAERRRLDLGKDGLTHNM 119
Query: 289 LDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYR 348
L+ +H HWKRRR C+IKC GV TVDMDN+C +EE++GGKII R G+LY+FRGRNYN+
Sbjct: 120 LELLHRHWKRRRVCRIKCYGVPTVDMDNLCRVIEEKSGGKIIRRSQGMLYVFRGRNYNWN 179
Query: 349 SRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAK 408
+RP+ P+MLWKP P+YP ++Q VP+GL+ +EA +R GR++ +C+L + GVY +L K
Sbjct: 180 TRPQIPIMLWKPPAPIYPSVVQSVPEGLSEKEADNLRALGRRIHCLCRLERAGVYINLVK 239
Query: 409 NVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
V++AFE+ ELV+I+C+ ++ SD +K+GAKLRDLVPCV +SFER +L+W+
Sbjct: 240 MVKDAFEIDELVKIDCRELDRSDMKKVGAKLRDLVPCVPLSFERHFMLLWK 290
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/359 (44%), Positives = 226/359 (62%), Gaps = 22/359 (6%)
Query: 112 YSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYS 171
++ PA+ + A +++++ T K P +P +S + G PF+F++S
Sbjct: 30 FAPPASLTPNPREAPHAAAEKKRRTKKPPYRPPSS-----LDRGGRPASHSDLPFDFRFS 84
Query: 172 YTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVK 230
YTE+ P AKP+ LRE +SPFGP + RPWTG P +++ + P +K ++
Sbjct: 85 YTESTPDAKPIGLREPKYSPFGPGRLDRPWTGLC-APAVDTTIRDVHAEDPAPAAEKDLQ 143
Query: 231 PVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR--SSRQLNMGRDGLTHNM 288
++ RE +LGEPLT E +V+ +R + RQ+N+GRDGLTHNM
Sbjct: 144 EARR-------------RERERVLGEPLTPAERTFVVDKCQRNRTKRQVNLGRDGLTHNM 190
Query: 289 LDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYR 348
L++IH HWK A ++KC GV TVDM NVC +LE++TGG II+R GG L L+RGR+Y+ +
Sbjct: 191 LNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIHRHGGQLILYRGRHYHPK 250
Query: 349 SRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAK 408
RP PLMLWKP P+YPRLI+ +GLT+ E MRKKG + + KL KNG Y L
Sbjct: 251 KRPVIPLMLWKPAEPIYPRLIKTTIEGLTVVETKAMRKKGLHVPVLTKLAKNGYYASLVP 310
Query: 409 NVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSI 467
VR+AF ELVRI+C+G+ SDYRKIG KLRDLVPC+L+SF++E I++WRG+++ S+
Sbjct: 311 MVRDAFLTDELVRIDCKGLPKSDYRKIGVKLRDLVPCILVSFDKEQIIIWRGKDYDESM 369
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 205/303 (67%), Gaps = 22/303 (7%)
Query: 165 PFEFKYSYTEAPKA-KPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F+YSYTE+ ++ +P+ LRE +SPFGP + R WTG P + KLK D
Sbjct: 82 PFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRAWTGVC-APVVEPKLKFVD------ 134
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR--SSRQLNMGR 281
G P + RE+I G+PLT E + LVES +R + +Q+N+GR
Sbjct: 135 ------------GSENPNLEEKRRWWREQIQGQPLTNAERKILVESCQRHKTKKQINLGR 182
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK A +IKC GV TVDM NVC QLE++T GKII+R G+L L+R
Sbjct: 183 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIHRHCGLLVLYR 242
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GRNY+ + RP PLM+W+P P+YP+LI+ +GL++EE EMRKKG L + KL KNG
Sbjct: 243 GRNYHPKKRPVIPLMMWRPHEPIYPKLIKTTIEGLSIEETKEMRKKGLALPALTKLAKNG 302
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF V ELVRI+CQG+ SDY+KIG KLRDLVPC+L++FE+E I++WRG+
Sbjct: 303 YYASLVPMVRDAFLVNELVRIDCQGLPKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 362
Query: 462 EWK 464
++K
Sbjct: 363 DYK 365
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 218/336 (64%), Gaps = 22/336 (6%)
Query: 130 SKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAF 188
S +++ K P +P +S + G PF+F++SYTE+ P +KP+ LRE +
Sbjct: 54 STKKRRAKKPPYRPPSS-----LDRGGRPRAHSDLPFDFRFSYTESTPASKPIGLREPRY 108
Query: 189 SPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS 248
SPFGP + RPWTG P L++ ++ P +KG++ ++
Sbjct: 109 SPFGPGRLDRPWTGLC-APAVDATLRDVEAEDPLPDAEKGLEEARR-------------R 154
Query: 249 TREEILGEPLTADEVRELVESAK--RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKC 306
RE +LGEPLT E LV+ + R+ RQ+N+GRDGLTHNML++IH +WK A +IKC
Sbjct: 155 ERERVLGEPLTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKC 214
Query: 307 KGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYP 366
GV TVDM NVC QLE++TGG II+R G +L L+RGR+YN + RP PLMLWKP PVYP
Sbjct: 215 LGVPTVDMQNVCHQLEDKTGGVIIHRHGSLLILYRGRHYNPKKRPVIPLMLWKPAEPVYP 274
Query: 367 RLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQG 426
RLI+ +GLT+EE +MRKKG + KL KNG Y + VR+AF + ELVRI+C+G
Sbjct: 275 RLIKTTIEGLTVEETKQMRKKGLHAPVLTKLAKNGYYASIVPMVRDAFLMDELVRIDCKG 334
Query: 427 MNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQE 462
+ SDY+KIG KLRDLVPC+L+SF++E I++WRG+E
Sbjct: 335 LPKSDYKKIGVKLRDLVPCILVSFDKEQIIVWRGKE 370
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 200/303 (66%), Gaps = 22/303 (7%)
Query: 165 PFEFKYSYTE-APKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F+YSYTE +P +P+ LRE +SPFGP + R WTG P
Sbjct: 78 PFDFQYSYTETSPSVRPIGLREPKYSPFGPGRLDREWTGVCA----------------PA 121
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR--SSRQLNMGR 281
N K P L G R V RE I GEPL E + LVE ++ + RQ+N+GR
Sbjct: 122 ANPKATSVEGMEDPRLEGK--RRV-MREAIQGEPLPGAERKALVEKCQKNKTKRQINLGR 178
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HW+ A +IKC GV TVDM NVC QLE++T GKII+R GG L L+R
Sbjct: 179 DGLTHNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIHRHGGFLVLYR 238
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GRNYN + RP PLMLW+P P+YPRLI+ DGL+++E EMRKKG + + KL KNG
Sbjct: 239 GRNYNPKKRPFIPLMLWRPHEPIYPRLIKTTIDGLSIDETKEMRKKGLAVPALTKLAKNG 298
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF CELVRI+C+G+ SDY+KIG KLRDLVPC+L++F++E I++WRG+
Sbjct: 299 YYGSLVPMVRDAFLSCELVRIDCKGLERSDYKKIGCKLRDLVPCILVTFDKEQIVVWRGK 358
Query: 462 EWK 464
+++
Sbjct: 359 DYQ 361
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 200/303 (66%), Gaps = 22/303 (7%)
Query: 165 PFEFKYSYTEAPKA-KPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F+YSYTE+ ++ +P+ LRE +SPFGP + R WTG P K+K D
Sbjct: 87 PFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVC-APAVDPKVKSLD------ 139
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR--SSRQLNMGR 281
G P + RE+I G+PLT E + LV +R + RQ+N+GR
Sbjct: 140 ------------GTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLGR 187
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK A +IKC GV TVDM NVC QLE++T GKII+R G L L+R
Sbjct: 188 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYR 247
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GRNYN + RP PLM+W+P P+YPRLI+ DGL+++E EMRK+G + + KL KNG
Sbjct: 248 GRNYNPKKRPVIPLMMWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNG 307
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF ELVRI+CQG+ SDY+KIG KLRDLVPC+L++FE+E I++WRG+
Sbjct: 308 YYASLVPMVRDAFLTNELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 367
Query: 462 EWK 464
++K
Sbjct: 368 DYK 370
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/306 (50%), Positives = 202/306 (66%), Gaps = 17/306 (5%)
Query: 165 PFEFKYSYTEAP-KAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F++SYTE+ AKP+ LRE +SPFGP + RPW+G P L+ D+ P
Sbjct: 83 PFDFRFSYTESSLDAKPIGLREPKYSPFGPGRLDRPWSGLC-APAVDTTLRSVDAEDPAP 141
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK--RSSRQLNMGR 281
+K ++ ++ RE +LGEPLT E LVE + R+ RQ+N+GR
Sbjct: 142 AAEKDLEEARR-------------RERERVLGEPLTPAERSFLVEKCQKNRTKRQINLGR 188
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK ++KC GV TVDM NVC +LE++TGG II+R GG L L+R
Sbjct: 189 DGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIHRHGGQLILYR 248
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GR+Y+ + RP PLMLWKP P+YPRLI+ +GLT+EE EMRKKG + KL KNG
Sbjct: 249 GRHYHPKKRPVIPLMLWKPAEPIYPRLIKTTIEGLTVEETKEMRKKGLHASVLTKLAKNG 308
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+ F ELVRI+C+G+ SDYRKIG KLRDLVPC+L+SF++E I++WRG+
Sbjct: 309 YYASLVPMVRDGFLTDELVRIDCKGLPKSDYRKIGVKLRDLVPCILVSFDKEQIIVWRGK 368
Query: 462 EWKSSI 467
+ SI
Sbjct: 369 DHDESI 374
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/270 (55%), Positives = 182/270 (67%), Gaps = 36/270 (13%)
Query: 196 MGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILG 255
M RPWTG+APL SKKK+ FDSF PPP KGVK V+ PGP+ G P TREEILG
Sbjct: 1 MPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPLGKFPVEGRTREEILG 60
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
EPL+ E+R LV+ +RQ+N+GRDGLTHNML+ IH+HWKR+R CK+ CKGV T+DMD
Sbjct: 61 EPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMD 120
Query: 316 NVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDG 375
NVC LEE+TGGKII+R GGV+YLFRGRNYNY
Sbjct: 121 NVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNY---------------------------- 152
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
+ +G LIPIC+L KNGVY L K+VR+AFE LV+I+C+GM+ SDY+KI
Sbjct: 153 --------LANEGENLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKI 204
Query: 436 GAKLRDLVPCVLISFEREHILMWRGQEWKS 465
GAKL++ VPCVL+SF+ E IL WRG WKS
Sbjct: 205 GAKLKESVPCVLLSFDDEQILTWRGHGWKS 234
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 204/305 (66%), Gaps = 26/305 (8%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGR-AP-LPPSKKKLKEFDSFQL 221
PF+F++SYTE+ K +P+ LRE +SPFGP + R WTG AP + P+ + L+
Sbjct: 84 PFDFRFSYTESSAKVRPIGLREPKYSPFGPGRVDRKWTGVCAPAVDPTVESLE------- 136
Query: 222 PPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNM 279
GP P + RE I G+PL+++E + LV +RS +R +N+
Sbjct: 137 --------------GPEDPKLEEQRKKKREMIQGKPLSSEERKALVSQFERSKTNRHVNL 182
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYL 339
GRDGLTHNML+ IH HWK A +IKC GV T+DM+N+C QLE++T GK+I+R GG L L
Sbjct: 183 GRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIFRHGGTLIL 242
Query: 340 FRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
+RGRNYN + RP P+MLWKP PVYPRLI+ DGL+++E EMRK+G + + KL K
Sbjct: 243 YRGRNYNPKKRPVIPVMLWKPHEPVYPRLIKTTIDGLSIKETKEMRKRGLSVPALTKLAK 302
Query: 400 NGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
NG Y L VR+AF CELVRI+C+G+ DY+KIG KLRD+VPC+L++FE E I++WR
Sbjct: 303 NGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFENEQIVVWR 362
Query: 460 GQEWK 464
G+++K
Sbjct: 363 GKDYK 367
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/306 (49%), Positives = 204/306 (66%), Gaps = 17/306 (5%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F++SYTE+ P KP+ LRE +SPFGP + RPWTG P L++ + P
Sbjct: 77 PFDFRFSYTESSPGDKPIGLREPKYSPFGPGRLDRPWTGLCA-PAVDTTLRDAHADDPAP 135
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK--RSSRQLNMGR 281
++ ++ ++ RE +LGEPLT E LV + R+ +Q+N+GR
Sbjct: 136 AAERELEEARR-------------RERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGR 182
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK A ++KC GV TVDM NVC QLE++TGG II+R GG L L+R
Sbjct: 183 DGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYR 242
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GR+YN + RP PLMLWKP PVYPRLI+ +GLT+EE EMRKKG + + KL KNG
Sbjct: 243 GRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNG 302
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF ELVRI+ +G+ SDYRKIG KLRDLVPC+++SF++E I++WRG+
Sbjct: 303 YYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGK 362
Query: 462 EWKSSI 467
++ +I
Sbjct: 363 DYNGTI 368
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 207/303 (68%), Gaps = 19/303 (6%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F++SYTE+ P +P+ LRE +SPFGP + R WTG P K+K D
Sbjct: 79 PFDFRFSYTESCPDVRPIGLREPKYSPFGPGRLDRTWTGVCA-PAVDLKVKSVDDGV--- 134
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR--SSRQLNMGR 281
++G+ +K R V RE+I G+PLT E + LV+ +R + +Q+N+G
Sbjct: 135 -GEEGLDLEEK----------RTV-MREKIQGKPLTKAEGKILVDKCQRNKTKKQINLGI 182
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK A ++KC GV TVDM NVC QLE++T GKII+R G+L L+R
Sbjct: 183 DGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIHRHCGLLVLYR 242
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GRNY+ R+RP PLMLWKP PVYPRLI+ DGL++EE EMRK+G + + KL +NG
Sbjct: 243 GRNYHPRNRPVIPLMLWKPHEPVYPRLIKTTIDGLSIEETKEMRKRGLAVPALTKLSRNG 302
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
+ L VR+AF V ELVRI+CQG++ SD +KIG KLRDLVPC+L++F++E I++WRG+
Sbjct: 303 YFGSLVPMVRDAFLVSELVRIDCQGLDRSDSKKIGCKLRDLVPCILVTFDKEQIVVWRGK 362
Query: 462 EWK 464
++K
Sbjct: 363 DYK 365
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 192/302 (63%), Gaps = 36/302 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+EA P P+ RE FSPFGP + R WTG A
Sbjct: 83 PFDFRYSYSEANPSVHPIGFREPPRFSPFGPARLDRKWTGTA------------------ 124
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVS-TREEILGEPLTADEVRELVESAKRS--SRQLNM 279
P P VS R+ +LGEPL+ DE+ ELVE + S SRQ+N+
Sbjct: 125 -------------APAEEVVDPAVVSEQRKAVLGEPLSEDEIAELVERYRHSDCSRQINL 171
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYL 339
G+ G+THNMLD+IH HWKR A +IKC GV T+DM+NVC LE++ GGKIIYR ++ L
Sbjct: 172 GKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILL 231
Query: 340 FRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
+RGRNY+ ++RP PLMLWKP P+YP+L++ V DGLT EE EMR +G L P+ KL K
Sbjct: 232 YRGRNYDPKNRPVVPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTK 291
Query: 400 NGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
NGVY ++ + VREAF E+VR++C + SD ++IG KLRDLVPCV I F+ E I++W+
Sbjct: 292 NGVYVNVVERVREAFRSEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWK 351
Query: 460 GQ 461
G+
Sbjct: 352 GK 353
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 192/302 (63%), Gaps = 36/302 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+EA P P+ RE FSPFGP + R WTG A
Sbjct: 64 PFDFRYSYSEANPSVHPIGFREPPRFSPFGPARLDRKWTGTA------------------ 105
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVS-TREEILGEPLTADEVRELVESAKRS--SRQLNM 279
P P VS R+ +LGEPL+ DE+ ELVE + S SRQ+N+
Sbjct: 106 -------------APAEEVVDPAVVSEQRKAVLGEPLSEDEIAELVERYRHSDCSRQINL 152
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYL 339
G+ G+THNMLD+IH HWKR A +IKC GV T+DM+NVC LE++ GGKIIYR ++ L
Sbjct: 153 GKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILL 212
Query: 340 FRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
+RGRNY+ ++RP PLMLWKP P+YP+L++ V DGLT EE EMR +G L P+ KL K
Sbjct: 213 YRGRNYDPKNRPVVPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTK 272
Query: 400 NGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
NGVY ++ + VREAF E+VR++C + SD ++IG KLRDLVPCV I F+ E I++W+
Sbjct: 273 NGVYVNVVERVREAFRSEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWK 332
Query: 460 GQ 461
G+
Sbjct: 333 GK 334
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 197/308 (63%), Gaps = 37/308 (12%)
Query: 166 FEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
F+F+YSY+E+ P +P+ RE FSPFGP + R WTG A
Sbjct: 75 FDFRYSYSESNPAIEPIGYREPKRFSPFGPGRLDRKWTGTA------------------- 115
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMGR 281
P Q L + + R +LG+PLT +EV ELVE + S SRQ+N+G+
Sbjct: 116 ------APTQ-----LETDMDKLMEERNRVLGDPLTEEEVAELVERYRHSDCSRQINLGK 164
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
G+THNMLD+IH HWKR A +IKC GV T+DMDNVC LE+++GGK++YR +L L+R
Sbjct: 165 GGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVVYRNINILLLYR 224
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GRNY+ +RP PLMLWKP P+YP+L++ V DGLT EE EMR +G +P+ KL +NG
Sbjct: 225 GRNYDPENRPVIPLMLWKPYAPIYPKLVKNVADGLTFEETKEMRNRGLNSLPLMKLTRNG 284
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG- 460
VY ++ VR+AFE E+VR++C+ + SD +KIG KL+DLVPCV I F+ E I++WRG
Sbjct: 285 VYVNVVDRVRDAFETEEVVRLDCKHVGMSDCKKIGVKLKDLVPCVPILFKDEQIILWRGK 344
Query: 461 --QEWKSS 466
QE +SS
Sbjct: 345 RNQELESS 352
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 30/342 (8%)
Query: 155 DGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKL 213
+G+ V PF+F++SYTE+ +P+ LRE +SPFGP + R WTG P K+
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNPKV 132
Query: 214 KEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR- 272
+ D + P +K K RE+I G LT E + LVE +R
Sbjct: 133 ESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQRN 174
Query: 273 -SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+ RQ+N+GRDGLTHNML++++ HWK A ++KC GV T+DM NV LE++T G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKL 391
+ G L L+RGRNY+ + RP+ PLMLWKP PVYPRLI+ DGL+++E MRKKG +
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 392 IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFE 451
+ KL KNG Y L VR+AF V ELVRI+C G+ DY+KIGAKLRDLVPC+L++F+
Sbjct: 295 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFD 354
Query: 452 REHILMWRGQEWKSSILKPGNDSEDA----KESKVDGSISVA 489
+E +++WRG+++K P D E + +ES +D + ++
Sbjct: 355 KEQVVIWRGKDYKP----PKEDDEYSSFIHRESSIDSDVDLS 392
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 151/301 (50%), Positives = 201/301 (66%), Gaps = 17/301 (5%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F++SYTE+ P +KP+ LRE +SPFGP + RPWTG P L++ ++ + P
Sbjct: 85 PFDFRFSYTESTPASKPIGLREPRYSPFGPGRLDRPWTGLC-APAVDATLRDVEA-EDPL 142
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK--RSSRQLNMGR 281
P+ + + RE +LGEPLT E LV+ + R+ RQ+N+GR
Sbjct: 143 PDAERGLEEAR------------RRERERVLGEPLTPAERAFLVDRCQKNRTKRQINLGR 190
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DG THNML ++H +WK A +IKC GV TVDM NVC QLE++TGG II+R G +L L+R
Sbjct: 191 DGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGSLLILYR 250
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GR+YN + RP PLMLWKP PVYPRLI+ +GLT+EE +MRKKG + + KL KNG
Sbjct: 251 GRHYNPKKRPVVPLMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHVPVLTKLAKNG 310
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF ELVRI+C+G+ SDY+KIG KLRDLVPC+L+SF++E I++WRG
Sbjct: 311 YYASLVPMVRDAFLTDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFDKEQIIVWRGN 370
Query: 462 E 462
E
Sbjct: 371 E 371
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 286 bits (731), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 210/336 (62%), Gaps = 30/336 (8%)
Query: 155 DGLSYVIDGAPFEFKYSYTEAP-KAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKL 213
+G+ V PF+F++SYTE+ +P+ LRE +SPFGP + R WTG P K+
Sbjct: 75 EGVKTVHSDLPFDFRFSYTESSSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVDPKV 133
Query: 214 KEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR- 272
+ D + P +K K RE+I G LT E + LVE +R
Sbjct: 134 ESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQRN 175
Query: 273 -SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+ RQ+N+GRDGLTHNML++I+ HWK A ++KC GV T+DM NV LE++T G+++
Sbjct: 176 KTKRQVNLGRDGLTHNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 235
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKL 391
+ G L L+RGRNY+ + RP+ PLMLWKP PVYPRLI+ DGL+++E MRKKG +
Sbjct: 236 KHCGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 295
Query: 392 IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFE 451
+ KL KNG Y L VR+AF V ELVRI+C G++ DY+KIGAKLRDLVPC+L++F+
Sbjct: 296 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLDRKDYKKIGAKLRDLVPCILVTFD 355
Query: 452 REHILMWRGQEWKSSILKPGNDSEDA----KESKVD 483
+E +++WRG+ +K P +D E + +ES +D
Sbjct: 356 KEQVVIWRGKNYKP----PKDDDEYSSFIHRESSID 387
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 191/301 (63%), Gaps = 34/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A +
Sbjct: 80 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGA------- 132
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
++REE+LGEPL +EV +LVE + S SRQ+N+G
Sbjct: 133 -----------------------AATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLG 169
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNM+D+IH HWKR A +IKC GV T+DMDN+C LE++TGGK+IYR +L L+
Sbjct: 170 KGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILY 229
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP+ PLMLWKP+ P+YPRL+Q V DGLT E+ E+R G P+ KL +N
Sbjct: 230 RGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRN 289
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD +KIG KLRDLVPCV + F+ E I++WRG
Sbjct: 290 GVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRG 349
Query: 461 Q 461
+
Sbjct: 350 K 350
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 191/301 (63%), Gaps = 34/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A +
Sbjct: 75 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGA------- 127
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
++REE+LGEPL +EV +LVE + S SRQ+N+G
Sbjct: 128 -----------------------AATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLG 164
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNM+D+IH HWKR A +IKC GV T+DMDN+C LE++TGGK+IYR +L L+
Sbjct: 165 KGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILY 224
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP+ PLMLWKP+ P+YPRL+Q V DGLT E+ E+R G P+ KL +N
Sbjct: 225 RGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRN 284
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD +KIG KLRDLVPCV + F+ E I++WRG
Sbjct: 285 GVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRG 344
Query: 461 Q 461
+
Sbjct: 345 K 345
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 191/301 (63%), Gaps = 34/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A +
Sbjct: 79 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGA------- 131
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
++REE+LGEPL +EV +LVE + S SRQ+N+G
Sbjct: 132 -----------------------AATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLG 168
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNM+D+IH HWKR A +IKC GV T+DMDN+C LE++TGGK+IYR +L L+
Sbjct: 169 KGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILY 228
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP+ PLMLWKP+ P+YPRL+Q V DGLT E+ E+R G P+ KL +N
Sbjct: 229 RGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRN 288
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD +KIG KLRDLVPCV + F+ E I++WRG
Sbjct: 289 GVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRG 348
Query: 461 Q 461
+
Sbjct: 349 K 349
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 191/301 (63%), Gaps = 35/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A
Sbjct: 77 PFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTA------------------ 118
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
+ G Y G REE+LGEPL+ +EV LVE + S SRQ+N+G
Sbjct: 119 ---------AARVGDYASGDE----RIREEVLGEPLSEEEVAALVERYRHSDCSRQINLG 165
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE++TGGK++ R ++ L+
Sbjct: 166 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILY 225
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP PLMLWKP+ P+YP+L+Q V +GLT EE E+R +G P+ KL +N
Sbjct: 226 RGRNYDPQKRPGVPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRN 285
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + +D +KIG KLRDLVPC+ I F+ E I++WRG
Sbjct: 286 GVYVNVVDKVREAFKTVEVVRLDCTHVGTTDCKKIGVKLRDLVPCIPILFKDEQIILWRG 345
Query: 461 Q 461
+
Sbjct: 346 K 346
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 191/301 (63%), Gaps = 35/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A
Sbjct: 81 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGAA------------------ 122
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
+ G G +REE+LGEPL+ +EV LVE + S SRQ+N+G
Sbjct: 123 ---------AARVGEDASGDE----RSREEVLGEPLSEEEVAALVEKYRHSDCSRQINLG 169
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE++TGGK+IYR ++ L+
Sbjct: 170 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRSINIIILY 229
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP PLMLWKP+ P+YP+L+Q V +GLT EE E+R +G + KL +N
Sbjct: 230 RGRNYDPKRRPGIPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPALTKLTRN 289
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD +KIG KLRDLVPC+ I F+ E I++WRG
Sbjct: 290 GVYVNVVDKVREAFKTVEVVRLDCTHVGTSDCKKIGVKLRDLVPCIPILFKDEQIILWRG 349
Query: 461 Q 461
+
Sbjct: 350 K 350
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 191/301 (63%), Gaps = 35/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A
Sbjct: 77 PFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTA------------------ 118
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
+ G G +REE+LGEPL+ +EV LVE + S SRQ+N+G
Sbjct: 119 ---------AARVGDDASGDE----RSREEVLGEPLSEEEVAALVEKYRHSDCSRQINLG 165
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE++TGGK++ R ++ L+
Sbjct: 166 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILY 225
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP PLMLWKP+ P+YP+L+Q V +GLT EE E+R +G P+ KL +N
Sbjct: 226 RGRNYDPQKRPGVPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRN 285
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + +D +KIG KLRDLVPC+ I F+ E I++WRG
Sbjct: 286 GVYVNVVDKVREAFKTVEVVRLDCTHVGTTDCKKIGVKLRDLVPCIPILFKDEQIILWRG 345
Query: 461 Q 461
+
Sbjct: 346 K 346
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 190/301 (63%), Gaps = 30/301 (9%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A E
Sbjct: 75 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGAAAAAARVYGDSEGGDGG-- 132
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
++RE++LGE L+ EV ELVE + S SRQ+N+G
Sbjct: 133 ------------------------GTSREDLLGEALSEAEVSELVERYRHSDCSRQINLG 168
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE++TGGKII+R +L L+
Sbjct: 169 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVATLDMDNICFHLEDKTGGKIIHRSINILILY 228
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP PLMLWKP+ P+YP+L+Q V +G+T EE E+R +G P+ KL +N
Sbjct: 229 RGRNYDPKQRPVIPLMLWKPLAPIYPKLVQSVAEGMTFEETKELRNRGLNSPPLMKLTRN 288
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD +KIG KLRDLVPCV I F+ E I++WRG
Sbjct: 289 GVYVNVVDRVREAFQTVEVVRLDCTHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWRG 348
Query: 461 Q 461
+
Sbjct: 349 K 349
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 190/302 (62%), Gaps = 34/302 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREA-AFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F YSY+E P P+ RE+ FSPFGP + R WTG + + + E
Sbjct: 79 PFDFFYSYSETNPLVSPIGYRESPKFSPFGPGRLDRKWTGTSAPSAVEVNINEV------ 132
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
+ R+ ILG+PL +EV ELVE + S SRQ+N+G
Sbjct: 133 ------------------------LEERKRILGDPLLDEEVAELVEQYRHSDCSRQINLG 168
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE+++GGKIIYR +L L+
Sbjct: 169 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRHINILLLY 228
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ ++RP PLMLWKP P+YP+L++ V D L+ +E EMR +G P+ KL +N
Sbjct: 229 RGRNYDPKNRPAIPLMLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNSPPLMKLTRN 288
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD ++IG KLRDLVPCV I F+ E I++WRG
Sbjct: 289 GVYVNVVDRVREAFKFEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKNEQIILWRG 348
Query: 461 QE 462
++
Sbjct: 349 KK 350
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 191/306 (62%), Gaps = 34/306 (11%)
Query: 160 VIDGAPFEFKYSYTEA-PKAKPLKLRE-AAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFD 217
VI PF+F+YSY+E P+ +P+ RE FSPFGP + R WTG L E D
Sbjct: 73 VISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALASP-----EID 127
Query: 218 SFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SR 275
Q +V R +LGE LT DEV EL+E + S +R
Sbjct: 128 QSQ-------------------------WVEERARVLGETLTEDEVTELIERYRHSDCTR 162
Query: 276 QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGG 335
Q+N+G+ G+THNM+D+IH HWK+ A +IKC GV T+DMDN+C LEE++GGKI+YR
Sbjct: 163 QINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNIN 222
Query: 336 VLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPIC 395
+L L+RGRNY+ +SRP PLMLWKP P+YPRL++ V DGL EE EMR +G +
Sbjct: 223 ILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALM 282
Query: 396 KLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHI 455
KL +NGVY ++ VRE FE E+VR++C + SD ++IG KL+++VPCV I F+ E I
Sbjct: 283 KLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQI 342
Query: 456 LMWRGQ 461
++WRG+
Sbjct: 343 ILWRGK 348
>gi|414884471|tpg|DAA60485.1| TPA: hypothetical protein ZEAMMB73_919812, partial [Zea mays]
Length = 250
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 140/251 (55%), Positives = 177/251 (70%), Gaps = 16/251 (6%)
Query: 85 ATNGVAFKSAGTPSSPSRPSIPGRK----SKYSKPATN------SSVDHPAFRKISK--R 132
AT + +S +P+ S P +P S + +P T ++ HPAF ++
Sbjct: 2 ATARLPSRSFLSPAQQSYPRLPASVRLCLSHHEQPPTGPKRHRRAATSHPAFSAAARGRA 61
Query: 133 EKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFG 192
+K ++PAA + +T+ G+SY +DGAPFEF+YSYTEAP+A+P+ LREA F PFG
Sbjct: 62 KKIPIADTDEPAA---GVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFG 118
Query: 193 PTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS-TRE 251
P RPWTGR PLP S+K+L EFDSF LP P KKGVKPVQ PGP+L G PRY S +RE
Sbjct: 119 PEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSRE 178
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
+ILGEPLT +EV ELV+ + +S RQLNMGRDGLTHNML+NIH+HWKR+R CKIKCKGVCT
Sbjct: 179 DILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 312 VDMDNVCEQLE 322
+DMDN+C QLE
Sbjct: 239 IDMDNICHQLE 249
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 190/306 (62%), Gaps = 41/306 (13%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F++SYTE+ P KP+ LRE R P P +K++L+E
Sbjct: 77 PFDFRFSYTESSPGEKPIGLREPKV---------RDAQAEDPAPAAKRELEEARR----- 122
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK--RSSRQLNMGR 281
RE +LGEPLT E LV + R+ +Q+N+GR
Sbjct: 123 ------------------------RERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGR 158
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK A ++KC GV TVDM NVC QLE++TGG II+R GG L L+R
Sbjct: 159 DGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYR 218
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GR+YN + RP PLMLWKP PVYPRLI+ +GLT+EE EMRKKG + + KL KNG
Sbjct: 219 GRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNG 278
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF ELVRI+ +G+ SDYRKIG KLRDLVPC+++SF++E I++WRG+
Sbjct: 279 YYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGK 338
Query: 462 EWKSSI 467
++ +I
Sbjct: 339 DYNGTI 344
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 142/188 (75%)
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYL 339
GRDGLTHNML++IH HWK A ++KC GV TVDM NVC QLE++TGG II+R GG L L
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLIL 427
Query: 340 FRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
+RGR+YN + RP PLMLWKP PVYPRLI+ +GLT+EE EMRKKG + + KL K
Sbjct: 428 YRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAK 487
Query: 400 NGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
NG Y L VR+AF ELVRI+ +G+ SDYRKIG KLRDLVPC+++SF++E I++WR
Sbjct: 488 NGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWR 547
Query: 460 GQEWKSSI 467
G+++ +I
Sbjct: 548 GKDYNGTI 555
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 191/301 (63%), Gaps = 36/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREA-AFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E+ P P+ RE+ FSPFGP + R WTG +
Sbjct: 77 PFDFRYSYSESDPSVGPISFRESPKFSPFGPGRIDRKWTGVS------------------ 118
Query: 223 PPNKKGVKPVQ-KPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNM 279
PVQ +P R R ILGEPL+ EV EL+E + S +RQ+N+
Sbjct: 119 -------APVQGEP------DRERVEEERNRILGEPLSEVEVAELIERYRHSDCARQINL 165
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYL 339
G+ G+THNML +IH HWK+ A +IKC GV T+DMDNVC LE+++GGK+IYR +L L
Sbjct: 166 GKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLL 225
Query: 340 FRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
+RGRNY+ ++ P PLMLWKP P+YPRL++ V +GLT EE EMRK G P+ KL +
Sbjct: 226 YRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTR 285
Query: 400 NGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
NGVY ++ + VREAF+ E+V+++C + SD +KIG KLRDLVPCV I F+ E I++WR
Sbjct: 286 NGVYVNVVERVREAFKTQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWR 345
Query: 460 G 460
G
Sbjct: 346 G 346
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 194/306 (63%), Gaps = 34/306 (11%)
Query: 160 VIDGAPFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFD 217
+I PF+F+YSY+E P+ +P+ RE FSPFGP + R WTG + L E D
Sbjct: 69 MISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTSALVSP-----EID 123
Query: 218 SFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SR 275
Q +V R +LGEPLT +EV ELVE + S SR
Sbjct: 124 QSQ-------------------------WVEERARVLGEPLTEEEVTELVERYRHSDCSR 158
Query: 276 QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGG 335
Q+N+G+ G+THNM+D+IH HWK+ A +IKC GV T+DMDN+C LEE++GGKI+YR
Sbjct: 159 QINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRHIN 218
Query: 336 VLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPIC 395
+L L+RGRNY+ +SRP PLMLWKP P+YPRL++ V DGLT EE EMR +G +
Sbjct: 219 ILVLYRGRNYDPKSRPIIPLMLWKPYPPIYPRLVKNVADGLTFEETKEMRNRGIHSPALM 278
Query: 396 KLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHI 455
KL +NGVY ++ VRE FE E+VR++C + SD ++IG KL+DLVPCV I F+ E I
Sbjct: 279 KLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKDLVPCVPILFKDEQI 338
Query: 456 LMWRGQ 461
++WRG+
Sbjct: 339 ILWRGK 344
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 190/301 (63%), Gaps = 36/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREA-AFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E+ P P+ RE+ FSPFGP + R WTG +
Sbjct: 77 PFDFRYSYSESDPSVGPISFRESPKFSPFGPGRIDRKWTGVS------------------ 118
Query: 223 PPNKKGVKPVQ-KPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNM 279
PVQ +P R R ILGEPL+ EV EL+E + S +RQ+N+
Sbjct: 119 -------APVQGEP------DRERVEEERNRILGEPLSEVEVAELIERYRHSDCARQINL 165
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYL 339
G+ G+THNML +IH HWK+ +IKC GV T+DMDNVC LE+++GGK+IYR +L L
Sbjct: 166 GKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLL 225
Query: 340 FRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
+RGRNY+ ++ P PLMLWKP P+YPRL++ V +GLT EE EMRK G P+ KL +
Sbjct: 226 YRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTR 285
Query: 400 NGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWR 459
NGVY ++ + VREAF+ E+V+++C + SD +KIG KLRDLVPCV I F+ E I++WR
Sbjct: 286 NGVYVNVVERVREAFKTQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWR 345
Query: 460 G 460
G
Sbjct: 346 G 346
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 191/301 (63%), Gaps = 34/301 (11%)
Query: 165 PFEFKYSYTEAPKA-KPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E+ A +P+ RE FSPFGP + R WTG A
Sbjct: 120 PFDFRYSYSESDSAIQPIGYREPKRFSPFGPGRLDRKWTGVA------------------ 161
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
PVQ + R +LG+PLT +EV ELVE + S SRQ+N+G
Sbjct: 162 -------APVQSEV-----DMEIVMEERRRVLGDPLTEEEVEELVERYRHSDCSRQINLG 209
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWK+ A +IKC GV T+DMDNVC LE+++GGKIIYR +L L+
Sbjct: 210 KGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYRHINILLLY 269
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ ++RP P+MLWKP P++P+L++ V DGL+ EE E+R +G + KL +N
Sbjct: 270 RGRNYDPKNRPVIPIMLWKPYAPIFPKLVKNVADGLSFEETKEIRNRGLNSPALMKLTRN 329
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY + + VREAF+ E+VR++C + SD +KIG KLRDLVPCV I F+ E I++WRG
Sbjct: 330 GVYVYVVERVREAFQTEEVVRLDCTHVGSSDCKKIGVKLRDLVPCVPILFKDEQIILWRG 389
Query: 461 Q 461
+
Sbjct: 390 K 390
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 178/302 (58%), Gaps = 35/302 (11%)
Query: 155 DGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKL 213
+G+ V PF+F++SYTE+ +P+ LRE +SPFGP + R WTG P K+
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNPKV 132
Query: 214 KEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR- 272
+ D + P +K K RE+I G LT E + LVE +R
Sbjct: 133 ESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQRN 174
Query: 273 -SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+ RQ+N+GRDGLTHNML++++ HWK A ++KC GV T+DM NV LE++T G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKL 391
+ G L L+RGRNY+ + RP+ PLMLWKP PVYPRLI+ DGL+++E MRKKG +
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 392 IPICKLG-------------KNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAK 438
+ KLG KNG Y L VR+AF V ELVRI+C G+ DY+KIGAK
Sbjct: 295 PALTKLGPYLFHAFLFLNSAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAK 354
Query: 439 LR 440
LR
Sbjct: 355 LR 356
>gi|147780327|emb|CAN67999.1| hypothetical protein VITISV_025803 [Vitis vinifera]
Length = 331
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/220 (54%), Positives = 149/220 (67%), Gaps = 4/220 (1%)
Query: 108 RKSKYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAASKSN--ISITEDGLSYVIDGAP 165
+ K S+P T PAF+ + R K + AS + + I E G+SY++ GAP
Sbjct: 46 KSQKSSRPPTKPPT--PAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAP 103
Query: 166 FEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPN 225
FEF++SY+E PKAKPL +RE AF PF P TM RPWTG+APL SKKK+ FDSF PPP
Sbjct: 104 FEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPG 163
Query: 226 KKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLT 285
KGVK V+ PGP+ G P TREEILGEPL+ E+R LV+ +RQ+N+GRDGLT
Sbjct: 164 TKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLT 223
Query: 286 HNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERT 325
HNML+ IH+HWKR+R CK++CKGV T+DMDNVC LE T
Sbjct: 224 HNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEHHT 263
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 145/239 (60%), Gaps = 35/239 (14%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A
Sbjct: 77 PFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTA------------------ 118
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
+ G Y G REE+LGEPL+ +EV LVE + S SRQ+N+G
Sbjct: 119 ---------AARVGDYASGDE----RIREEVLGEPLSEEEVAALVERYRHSDCSRQINLG 165
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE++TGGK++ R ++ L+
Sbjct: 166 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILY 225
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGK 399
RGRNY+ + RP PLMLWKP+ P+YP+L+Q V +GLT EE E+R +G P+ KL K
Sbjct: 226 RGRNYDPQKRPGVPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLSK 284
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 148/247 (59%), Gaps = 22/247 (8%)
Query: 155 DGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKL 213
+G+ V PF+F++SYTE+ +P+ LRE +SPFGP + R WTG P K+
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNPKV 132
Query: 214 KEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR- 272
+ D + P +K K RE+I G LT E + LVE +R
Sbjct: 133 ESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQRN 174
Query: 273 -SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+ RQ+N+GRDGLTHNML++++ HWK A ++KC GV T+DM NV LE++T G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKL 391
+ G L L+RGRNY+ + RP+ PLMLWKP PVYPRLI+ DGL+++E MRKKG +
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 392 IPICKLG 398
+ KLG
Sbjct: 295 PALTKLG 301
>gi|147771140|emb|CAN74182.1| hypothetical protein VITISV_034260 [Vitis vinifera]
Length = 306
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 109/143 (76%), Gaps = 14/143 (9%)
Query: 323 ERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEAT 382
E+TGGKII+R GGV+YLFRGRNYNYR+RP++P+MLWKP PVYP+LIQ+ P+GLT EA
Sbjct: 19 EKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEAD 78
Query: 383 EMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDL 442
E+R KG+ LIPIC+L KNGVY L K+VR+AFE LV+I+C+GM+ SDY+KIGAKL+
Sbjct: 79 ELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLK-- 136
Query: 443 VPCVLISFEREHILMWRGQEWKS 465
IL WRG WKS
Sbjct: 137 ------------ILTWRGHGWKS 147
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
MLWKPV PVYPRL+ +VP GLT +EATEMR +G +L PICKLGKNGVY +L VREAFE
Sbjct: 1 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 60
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSI 467
C+LVR++C G+N SD RKIGAKL+DLVPC+L+SFE EHILMWRG +WKSS+
Sbjct: 61 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSL 112
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 713 GPSLEIVLHLMRQAVENGSALVL-DDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAI 771
G +E +L L+ QA+ +G ALVL +D D+D +YE+SVAF KS P VF+ RK +
Sbjct: 267 GSKVEGLLCLLEQAIHSGRALVLSEDELADSDLVYEKSVAFTKSIPRRLVFENTRRKSSA 326
Query: 772 QKGEKKEAGHLKMKREVPNMVVS--ENRGNVRQSNRKKTKNSDEIEHGLDVV--LSPQGS 827
++ K M+ S EN+ V + +T I+HG + + + QG+
Sbjct: 327 RRNVPDNHARTKTHLVENKMLSSPVENKFIVNGGSAMQT-----IDHGQEFLSDVVHQGT 381
Query: 828 LKIDELAKLLA 838
L++DELAKLLA
Sbjct: 382 LRVDELAKLLA 392
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 138/230 (60%), Gaps = 22/230 (9%)
Query: 155 DGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKL 213
+G+ V PF+F++SYTE+ +P+ LRE +SPFGP + R WTG P K+
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNPKV 132
Query: 214 KEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR- 272
+ D + P +K K RE+I G LT E + LVE +R
Sbjct: 133 ESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQRN 174
Query: 273 -SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+ RQ+N+GRDGLTHNML++++ HWK A ++KC GV T+DM NV LE++T G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEA 381
+ G L L+RGRNY+ + RP+ PLMLWKP PVYPRLI+ DGL+++E
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDET 284
>gi|413921150|gb|AFW61082.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 222
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 90/162 (55%), Gaps = 35/162 (21%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A
Sbjct: 77 PFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTA------------------ 118
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
+ G Y G REE+LGEPL+ +EV LVE + S SRQ+N+G
Sbjct: 119 ---------AARVGDYASGDE----RIREEVLGEPLSEEEVAALVERYRHSDCSRQINLG 165
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLE 322
+ G+THNMLD+IH HWKR A +IKC GV T+DMDN+C LE
Sbjct: 166 KGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLE 207
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 37/271 (13%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L + A R ++ +G G+T ++++IH W+ K++ +G +++M + L
Sbjct: 344 ELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDIL 403
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYRSR----------PRF-------PL----MLWKP 360
EERTGG +I+R G + L+RG NYN R PR+ P+ L
Sbjct: 404 EERTGGIVIWRSGRSVVLYRGMNYNLRCVQSYTQTTELGPRYKDWSGRGPIPVDADLLPG 463
Query: 361 VTPVYP---RLI-QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
V P Y RL+ V L +E T +R+ R+ P LG+N + LA + + +E
Sbjct: 464 VVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEK 523
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILK------ 469
+ +I + G+ + ++ ++R L VL+S +E+I+ +RG ++ + ++
Sbjct: 524 SSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSRNKEYIVFYRGNDFITPKVRQVLVEK 583
Query: 470 -----PGNDSEDAKESKVDGSISVAPPTAGN 495
D E+ K SISV P N
Sbjct: 584 QEQAITWQDEEELARLKASASISVKPKVFKN 614
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + + N+H HWK R K+ KG + ++ LE +GG +I
Sbjct: 715 LMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTT 774
Query: 333 RGGVLYLFRGRNY 345
+G + L+RG+NY
Sbjct: 775 KGYAIILYRGKNY 787
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E+ L R ++LN+G+ G+T +++ IH +W+R KI C+ +C ++M
Sbjct: 164 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRT 223
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +++R G + L+RG NY Y
Sbjct: 224 HDLLERKTGGIVVWRSGSKIILYRGPNYIY 253
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
EI E +T +E L + R L +GR G+ ++N+H HWK R KI
Sbjct: 574 EIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSF 633
Query: 312 VDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPR 352
+ +V LE +GG ++ +R + +FRG+NY SR R
Sbjct: 634 KTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLR 678
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 376 LTLEEATEMRKKGRKL--IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQG-MNGSDY 432
L+ +E +R++ K+ +P+ +GK+ V +AK ++E F+ L +N +G G+
Sbjct: 907 LSNKERLLLRRQALKMKKLPVLSVGKSNVITGVAKAIKEHFKKHSLAIVNVKGRAKGTSV 966
Query: 433 RKIGAKLRDLVPCVLISFEREHILMWRGQE-----WKSSILKPGNDSEDAKESKVDGSIS 487
++I KL VL+S E ++++RG E K++++K + + S++ +I
Sbjct: 967 QEIVFKLEQATGAVLVSQEPSKVILYRGWEEEDRKQKATMMKNSGEDRLSMSSELMAAIR 1026
Query: 488 V 488
+
Sbjct: 1027 I 1027
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 24/227 (10%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
+ P Y + + +P G LT +E T +R+ R L LG+N LA ++ + +E
Sbjct: 363 IVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQLWEK 422
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW----KSSILKPG 471
CE+ +I + G+ ++ + + +L+ L L+S +RE I+++RG+++ SS ++
Sbjct: 423 CEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDREFIVLYRGKDFLPFAVSSAMEQK 482
Query: 472 NDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSAL 531
+ + D S P T G G L +E N S S G++++ S
Sbjct: 483 RHMRLHEMKQTDNS----PATTGQG--------LKLEINENGPTNESQSITGWKKIVSER 530
Query: 532 RENLSSIDGEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSE 578
R+ +SS S+ KLS A + ++ A+E L+ +++E E
Sbjct: 531 RKLMSSETSMRKTSI--KLSIALE-KKAKAEEFLAKLEEEEKLQQPE 574
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+G+T+EE ++K G ++ P LG+ GV+ +N+ ++ ELV+I +
Sbjct: 578 EGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVH 637
Query: 434 KIGAKLRDLVPCVLISFEREH----ILMWRGQEWKS-SILKP 470
+ L +L++ ER I+++RG+ +K S L+P
Sbjct: 638 DVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRP 679
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E+ L R ++LN+G+ G+T +++ IH W+R KI C+ +C ++M
Sbjct: 184 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRT 243
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +++R G + L+RG NY Y
Sbjct: 244 HDLLERKTGGIVVWRSGSKIILYRGPNYIY 273
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
EI E +T +E L + R L +GR G+ ++N+H HWK R KI
Sbjct: 595 EIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSF 654
Query: 312 VDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPR 352
+ +V LE +GG ++ +R + +FRG+NY SR R
Sbjct: 655 KTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLR 699
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 23/231 (9%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y + + +P G LT +E T +R+ R L LG+N LA ++ +
Sbjct: 379 LLPAIVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQ 438
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW----KSSI 467
+E CE+ +I + G+ ++ + + +L+ L L+S +RE I+++RG+++ SS
Sbjct: 439 LWEKCEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDREFIVLYRGKDFLPFAVSSA 498
Query: 468 LKPGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEV 527
++ + + D S P T G G L +E N S S G++++
Sbjct: 499 MEQKRHMRLHEMKQTDNS----PATTGQG--------LKLEINENGPTNESQSITGWKKI 546
Query: 528 QSALRENLSSIDGEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSE 578
S R+ +SS S+ KLS ++ A+E L+ +++E E
Sbjct: 547 VSERRKLMSSETSMRKTSI--KLSIVCIRKKAKAEEFLAKLEEEEKLQQPE 595
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 376 LTLEEATEMRKKGRKL--IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQG-MNGSDY 432
L+ +E +R++ K+ +P+ +GK+ V +AK ++E F+ L +N +G G+
Sbjct: 928 LSNKERLLLRRQALKMKKLPVLSVGKSNVITGVAKAIKEHFKKHSLAIVNVKGRAKGTSV 987
Query: 433 RKIGAKLRDLVPCVLISFEREHILMWRGQE-----WKSSILKPGNDSEDAKESKVDGSIS 487
++I KL VL+S E ++++RG E K++++K + + S++ +I
Sbjct: 988 QEIVFKLEQATGAVLVSQEPSKVILYRGWEEEDRKQKATMMKNSGEDRLSMSSELMAAIR 1047
Query: 488 V 488
+
Sbjct: 1048 I 1048
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+G+T+EE ++K G ++ P LG+ GV+ +N+ ++ ELV+I +
Sbjct: 599 EGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVH 658
Query: 434 KIGAKLRDLVPCVLISFEREH----ILMWRGQEWKS-SILKP 470
+ L +L++ ER I+++RG+ +K S L+P
Sbjct: 659 DVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRP 700
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E+R L + ++L +G+ G+T +++ IH W+R KI+C+ +C ++M
Sbjct: 186 LPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRT 245
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +I+R G + L+RG NY Y
Sbjct: 246 HDILERKTGGLVIWRSGSYIILYRGANYKY 275
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
EI E +T +E L + R L +GR G+ ++N+H HWK R KI G
Sbjct: 600 EIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSI 659
Query: 312 VDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
D+ V LE +GG ++ +G + ++RG+NY
Sbjct: 660 EDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY 697
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDGL----TLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L V P Y R + +P GL T +E T +R+ GR L LG+N LA ++ +
Sbjct: 382 LLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIK 441
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + G+ ++ + +L++L L+S +RE I+ +RG+++
Sbjct: 442 LWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDF 493
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+G+T EE +RK G ++ P LG+ G++ +N+ ++ ELV+I G + D
Sbjct: 604 EGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIH 663
Query: 434 KIGAKLRDLVPCVLISFER----EHILMWRGQEWK 464
+ L +L++ ER I+M+RG+ +K
Sbjct: 664 GVARTLEAESGGILVAVERVSKGYAIIMYRGKNYK 698
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 143 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 202
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 203 HEILERKTGGLVIWRSGSTIILYRGTNYTY 232
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y R + +P G LT E T +R+ L LG++ LA ++ +
Sbjct: 410 LLPAIVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIK 469
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + + +D I ++++L L+S ++E I+ +RG+++
Sbjct: 470 LWERCEVAKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDF 521
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E+R L + ++L +G+ G+T +++ IH W+R KI+C+ +C ++M
Sbjct: 186 LPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRT 245
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +I+R G + L+RG NY Y
Sbjct: 246 HDILERKTGGLVIWRSGSYIILYRGANYKY 275
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
EI E +T +E L + R L +GR G+ ++N+H HWK R KI G
Sbjct: 600 EIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSI 659
Query: 312 VDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
D+ V LE +GG ++ +G + ++RG+NY
Sbjct: 660 EDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY 697
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDGL----TLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L V P Y R + +P GL T +E T +R+ GR L LG+N LA ++ +
Sbjct: 382 LLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIK 441
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + G+ ++ + +L++L L+S +RE I+ +RG+++
Sbjct: 442 LWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDF 493
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+G+T EE +RK G ++ P LG+ G++ +N+ ++ ELV+I G + D
Sbjct: 604 EGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIH 663
Query: 434 KIGAKLRDLVPCVLISFER----EHILMWRGQEWK 464
+ L +L++ ER I+M+RG+ +K
Sbjct: 664 GVARTLEAESGGILVAVERVSKGYAIIMYRGKNYK 698
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E+R L + ++L +G+ G+T +++ IH W+R KI+C+ +C ++M
Sbjct: 378 LPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRT 437
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +I+R G + L+RG NY Y
Sbjct: 438 HDILERKTGGLVIWRSGSYIILYRGANYKY 467
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
EI E +T +E L + R L +GR G+ ++N+H HWK R KI G
Sbjct: 975 EIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSI 1034
Query: 312 VDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
D+ V LE +GG ++ +G + ++RG+NY
Sbjct: 1035 EDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY 1072
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+G+T EE +RK G ++ P LG+ G++ +N+ ++ ELV+I G + D
Sbjct: 979 EGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIH 1038
Query: 434 KIGAKLRDLVPCVLISFER----EHILMWRGQEWK 464
+ L +L++ ER I+M+RG+ +K
Sbjct: 1039 GVARTLEAESGGILVAVERVSKGYAIIMYRGKNYK 1073
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 130 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 189
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 190 HEILERKTGGLVIWRSGSTIILYRGTNYTY 219
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y R + +P G LT E T +R+ L LG++ LA ++ +
Sbjct: 397 LLPAIVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIK 456
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + + +D I ++++L L+S ++E I+ +RG+++
Sbjct: 457 LWERCEVAKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDF 508
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 143 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 202
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 203 HEILERKTGGLVIWRSGSTIILYRGTNYTY 232
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 257 PLTADEVRELVESAKRSSRQ---------LNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
PL+ EVRE + +R + L +GR G+ ++N+H HWK R KI CK
Sbjct: 618 PLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICK 677
Query: 308 GVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
D++ LE +GG ++ +G + ++RG+NY S+ R +L K
Sbjct: 678 EHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSK 733
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y R + +P G LT E T +R+ L LG++ LA ++ +
Sbjct: 410 LLPAIVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIK 469
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + + +D I ++++L L+S ++E I+ +RG+++
Sbjct: 470 LWERCEVAKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDF 521
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 136 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 195
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 196 HEILERKTGGLVIWRSGSTIILYRGTNYTY 225
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 257 PLTADEVRELVESAKRSSRQ---------LNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
PL+ EVRE + +R + L +GR G+ ++N+H HWK R KI CK
Sbjct: 611 PLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICK 670
Query: 308 GVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
D++ LE +GG ++ +G + ++RG+NY S+ R +L K
Sbjct: 671 EHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSK 726
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
+ P Y R + +P G LT E T +R+ L LG++ LA ++ + +E
Sbjct: 407 IVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWER 466
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
CE+ +I + + +D I ++++L L+S ++E I+ +RG+++
Sbjct: 467 CEVAKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDF 514
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 46 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 105
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 106 HEILERKTGGLVIWRSGSTIILYRGTNYTY 135
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 257 PLTADEVRELVESAKRSSRQ---------LNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
PL+ EVRE + +R + L +GR G+ ++N+H HWK R KI CK
Sbjct: 521 PLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICK 580
Query: 308 GVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
D++ LE +GG ++ +G + ++RG+NY S+ R +L K
Sbjct: 581 EHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSK 636
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y R + +P G LT E T +R+ L LG++ LA ++ +
Sbjct: 313 LLPAIVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIK 372
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + + +D I ++++L L+S ++E I+ +RG+++
Sbjct: 373 LWERCEVAKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDF 424
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L+ +E+R L R+L +G+ G+T +++ IH W+R KI C+ +C ++M
Sbjct: 158 LSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRT 217
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +++R G + L+RG NY Y
Sbjct: 218 HDLLERKTGGLVVWRAGSKIVLYRGVNYIY 247
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 247 VSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKC 306
+S + EI E +T +E L + + L +GR G+ ++N+H HWK R KI C
Sbjct: 568 MSQQPEIDKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIIC 627
Query: 307 KGVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
K + V + LE +GG ++ +G + ++RG+NY + R P +L K
Sbjct: 628 KERSLNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQRPALLRPPTLLSK 684
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y + + +P G LT +E T +++ GR L LG+N LA ++ +
Sbjct: 353 LLPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIK 412
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + G+ ++ + +L+ L L+S +RE I+++RG+++
Sbjct: 413 LWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDF 464
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+G+T EE +RK G K+ P +G+ GV+ +N+ ++ ELV+I C+ + +
Sbjct: 577 EGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVH 636
Query: 434 KIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKP 470
++ L +L++ ER I+++RG+ ++ ++L+P
Sbjct: 637 EVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQRPALLRP 678
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 145 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 204
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 205 HEILERKTGGLVIWRSGSTIILYRGTNYKY 234
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 257 PLTADEVRELVESAKRSSRQ---------LNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
PL+ EVRE + +R + L +GR G+ ++N+H HWK R KI CK
Sbjct: 623 PLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICK 682
Query: 308 GVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
D++ LE +GG ++ +G + ++RG+NY S+ R +L K
Sbjct: 683 EHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYQRPSKLRPKTLLSK 738
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 26/228 (11%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
+ P Y R + +P G LT E T +R+ L LG++ LA ++ + +E
Sbjct: 419 IVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWER 478
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW------------ 463
CE+ +I + + +D I +++DL L+S ++E I+ +RG+++
Sbjct: 479 CEVAKIALKRDAHNTDSELITEEIKDLTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKR 538
Query: 464 ----KSSILKPGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSI 519
S+I KP D E+ ++ D + V+ + + T + V SLNT ++
Sbjct: 539 RKLGSSTIYKPKPDIEENMPTQDDSVLKVSNDVSVHIREEG-TSVTEVRAKSLNTVAKNV 597
Query: 520 SPKGYEEVQSALRENLSSIDGEEPFSVTKKLSFADDNEQLSADESLSL 567
+ + A+ E + E LS A+ E +S DE L
Sbjct: 598 EAR----LSQAIAEKERAEKLLEELEKASPLSKAEVRETISEDERYML 641
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ KI+C V ++M
Sbjct: 140 LPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRT 199
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 200 HEILERKTGGLVIWRSGSTIILYRGTNYKY 229
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D++ LE ++GG ++
Sbjct: 655 LLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVS 714
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG+NY+
Sbjct: 715 KGHAIIMYRGKNYH 728
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 379 EEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAK 438
EE +RK G ++ P LG+ GV+ +N+ ++ ELV+I C+ + D
Sbjct: 639 EERYMLRKIGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAART 698
Query: 439 LRDLVPCVLISFER----EHILMWRGQEW-KSSILKP 470
L +L++ ER I+M+RG+ + + S L+P
Sbjct: 699 LESQSGGILVAVERVSKGHAIIMYRGKNYHRPSTLRP 735
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ KI+C + ++M
Sbjct: 142 LPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRT 201
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG NY Y
Sbjct: 202 HEVLERKTGGLVIWRSGSTIILYRGTNYKY 231
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D+ LE +GG ++
Sbjct: 669 LLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVS 728
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG+NY
Sbjct: 729 KGHAIIMYRGKNY 741
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 379 EEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAK 438
EE +RK G ++ P LG+ GV+ +N+ ++ ELV+I C+ + D
Sbjct: 653 EERYMLRKVGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAART 712
Query: 439 LRDLVPCVLISFER----EHILMWRGQEWKS-SILKP 470
L +L++ ER I+M+RG+ ++ S L+P
Sbjct: 713 LEAESGGILVAVERVSKGHAIIMYRGKNYQRPSSLRP 749
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P + R + +P G LT E T +R+ R L LG++ LA ++ +
Sbjct: 429 LLPAIVPGFRRPFRLLPSGVPPKLTDREMTILRRLARPLPYHYALGRSSNLQGLAASIIK 488
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ +I + G D + +L+ L L+S + E I+++RG+++
Sbjct: 489 LWERCEVAKIAMKRGPYCIDSELVSEELKGLTGGTLLSRDNESIVLYRGKDF 540
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L + R +L +G+ G+T +++ IH W+ KI+C V ++M
Sbjct: 141 LPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRT 200
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG +Y Y
Sbjct: 201 HEILERKTGGLVIWRSGSTIILYRGTDYKY 230
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D++ LE +GG ++
Sbjct: 635 LLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVS 694
Query: 333 RGGVLYLFRGRNY 345
+ + ++RG+NY
Sbjct: 695 KAHAIIIYRGKNY 707
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L + P Y R + +P G LT E T +R+ R L LG++ LA ++ +
Sbjct: 392 LLPAIVPGYRRPFRLLPSGVPPRLTDREMTILRRLARPLPYHYALGRSSNLQGLAASMIK 451
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E CE+ ++ + G D I KL+ L L+S + E I+ +RG+++
Sbjct: 452 LWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDF 503
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L + R +L +G+ G+T +++ IH W+ KI+C V ++M
Sbjct: 141 LPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRT 200
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG +Y Y
Sbjct: 201 HEILERKTGGLVIWRSGSTIILYRGTDYKY 230
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D++ LE +GG ++
Sbjct: 599 LLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVS 658
Query: 333 RGGVLYLFRGRNY 345
+ + ++RG+NY
Sbjct: 659 KAHAIIIYRGKNY 671
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 217 DSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGE---PLTADEVRELVESAKRS 273
+ F+L P + VK ++ L G GPR+ + G P+ AD + +V +RS
Sbjct: 350 NKFRLQLPGE--VKLAEEADKLLDGLGPRF----SDWWGYDPLPVDADLLPAIVPGYRRS 403
Query: 274 SRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDNVCEQLEERTGGKIIYR 332
S N+ GL +M+ W+R K+ K G +D D + E+L+ TGG ++ R
Sbjct: 404 S---NL--QGLAASMI----KLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSR 454
Query: 333 RGGVLYLFRGRNY 345
+ +RG+++
Sbjct: 455 DNESIVFYRGKDF 467
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L + R +L +G+ G+T +++ IH W+ KI+C V ++M
Sbjct: 141 LPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRT 200
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
E LE +TGG +I+R G + L+RG +Y Y
Sbjct: 201 HEILERKTGGLVIWRSGSTIILYRGTDYKY 230
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D++ LE +GG ++
Sbjct: 599 LLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVS 658
Query: 333 RGGVLYLFRGRNY 345
+ + ++RG+NY
Sbjct: 659 KAHAIIIYRGKNY 671
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 217 DSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGE---PLTADEVRELVESAKRS 273
+ F+L P + VK ++ L G GPR+ + G P+ AD + +V +RS
Sbjct: 350 NKFRLQLPGE--VKLAEEADKLLDGLGPRF----SDWWGYDPLPVDADLLPAIVPGYRRS 403
Query: 274 SRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDNVCEQLEERTGGKIIYR 332
S N+ GL +M+ W+R K+ K G +D D + E+L+ TGG ++ R
Sbjct: 404 S---NL--QGLAASMI----KLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSR 454
Query: 333 RGGVLYLFRGRNY 345
+ +RG+++
Sbjct: 455 DNESIVFYRGKDF 467
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L + R ++ +G G+T +LD+IH WK K+K +G TV+M
Sbjct: 221 LPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRA 280
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
E+LE RTGG +I+R G ++ L+RG Y+
Sbjct: 281 HEKLENRTGGLVIWRSGSLIVLYRGMTYH 309
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI +G + +V LE + G +I
Sbjct: 657 LLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTT 716
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG+NY
Sbjct: 717 KGYEVIVYRGKNY 729
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC 417
+KP T + P ++ L +E T R+ RK+ P LG+N LA + + +E C
Sbjct: 410 YKPPTRILPYGVRHC---LRNKEVTIFRRLARKMPPHFALGRNRQLQGLANAMVKLWEKC 466
Query: 418 ELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+ +I + G+ + ++ +LR L L+S +E+I+ +RG ++
Sbjct: 467 AIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEYIVFYRGNDY 513
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L + R ++ +G G+T +LD+IH WK K+K +G TV+M
Sbjct: 278 LPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRA 337
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
E+LE RTGG +I+R G ++ L+RG Y+
Sbjct: 338 HEKLENRTGGLVIWRSGSLIVLYRGMTYH 366
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI +G + +V LE + G +I
Sbjct: 714 LLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTT 773
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG+NY
Sbjct: 774 KGYEVIVYRGKNY 786
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 358 WKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC 417
+KP T + P ++ L +E T R+ RK+ P LG+N LA + + +E C
Sbjct: 467 YKPPTRILPYGVRHC---LRNKEVTIFRRLARKMPPHFALGRNRQLQGLANAMVKLWEKC 523
Query: 418 ELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+ +I + G+ + ++ +LR L L+S +E+I+ +RG ++
Sbjct: 524 AIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEYIVFYRGNDY 570
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L R+L +G+ G+T +++ IH W+R KI C+ +C ++M +
Sbjct: 165 EELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDL 224
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNYNY 347
LE +TGG +++R G + L+RG +Y Y
Sbjct: 225 LERKTGGLVVWRVGSKIVLYRGADYKY 251
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L MG G+ ++N+H HWK R KI CK + V LE +GG ++
Sbjct: 602 LLMGERGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVS 661
Query: 333 RGGVLYLFRGRNYNYRSRPRFPLMLWK 359
+G + L+RG+NY + R P +L K
Sbjct: 662 KGYAIILYRGKNYTRPACLRPPTLLSK 688
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
V Y R + +P G LT +E T +++ GR L LG+N + LA ++ + +E
Sbjct: 362 VVSGYRRPFRLLPYGVSPTLTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEK 421
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
CE+ +I + G+ ++ + +L+ L L+S +RE I+++RG+++
Sbjct: 422 CEIAKIAVKRGVQNTNSELMAQELKWLTGGTLLSRDREFIVLYRGKDF 469
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 219 FQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLN 278
+LP ++G++PV++ G G R E ++ E E+R L A R ++
Sbjct: 234 IELPWKRREGLQPVERDG-----WGRRNTRMAERMVPE----HELRRLKNIALRMLERIK 284
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLY 338
+G G+T +++D IH W++ K+K +G + +M E LE RTGG +I+R G +
Sbjct: 285 VGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVV 344
Query: 339 LFRGRNY 345
L+RG Y
Sbjct: 345 LYRGMAY 351
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYR---- 332
L +G G+ ++N+H HWK R KI KG + ++ LE +GG ++
Sbjct: 699 LLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTP 758
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG+NY
Sbjct: 759 KGYAIIVYRGKNYQ 772
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 219 FQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLN 278
+LP ++G++PV++ G G R E ++ E E+R L A R ++
Sbjct: 237 IELPWKRREGLQPVERDG-----WGRRNTRMAERMVPE----HELRRLKNIALRMLERIK 287
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLY 338
+G G+T +++D IH W++ K+K +G + +M E LE RTGG +I+R G +
Sbjct: 288 VGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVV 347
Query: 339 LFRGRNY 345
L+RG Y
Sbjct: 348 LYRGMAY 354
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYR---- 332
L +G G+ ++N+H HWK R KI KG + ++ LE +GG ++
Sbjct: 702 LLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTP 761
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG+NY
Sbjct: 762 KGYAIIVYRGKNYQ 775
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT E+ L E + +++ +G+ G+T +++ IH W+R ++ C+ +C ++M
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +++R G + L+RG +Y Y
Sbjct: 211 HDILERKTGGLVVWRSGSKIILYRGIDYKY 240
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 251 EEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVC 310
EEI E +T +E L + L +GR G+ ++N+H HWK R KI C
Sbjct: 550 EEIDKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQES 609
Query: 311 TVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRP 351
LE +GG ++ +G + ++RG+NY SRP
Sbjct: 610 VEYAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNY---SRP 651
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 372 VPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGS 430
V LT +E T +++ GR L LG+N +A + + +E CE+V I + G+ +
Sbjct: 365 VQSKLTDDEMTTLKRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNT 424
Query: 431 DYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
RK+ +++ L L+S +E I+++RG+++
Sbjct: 425 SNRKMAEEIKYLTGGTLLSRNKEVIVIYRGKDF 457
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L R +++L +G+ G+T +++ IH W+ KI C+ + ++M + L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNY 347
E +TGG +I+R G + L+RG NY Y
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQY 255
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T DE L + + L +GR G+ ++N+H HWK R KI C
Sbjct: 577 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 636
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
V E LE +GG ++ +G + ++RG+NY
Sbjct: 637 KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNY 670
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
V P Y R + +P G LT +E T +R+ GR L LG+N LA + + +E
Sbjct: 359 VVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEK 418
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
CEL +I + G+ ++ + +L+ L LIS +++ I+++RG+++
Sbjct: 419 CELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDF 466
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 160/411 (38%), Gaps = 71/411 (17%)
Query: 366 PRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ 425
P+L +G+T +E +RK G K+ P LG+ GV+ +N+ ++ ELV+I C
Sbjct: 569 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICN 628
Query: 426 GMNGSDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEW------------------ 463
+ K+ L +L++ E I+++RG+ +
Sbjct: 629 EYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREAL 688
Query: 464 ------------KSSILKPGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGS 511
K +LK N+ E+ V+ S + + G S M++ E
Sbjct: 689 KRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESS-----NMMVEE--- 740
Query: 512 LNTFNSSISP-KGYEEVQSALRENLSS-IDGEEPFSVTKKLSFADDNEQLSADESLSLAD 569
T N P K E+++ +LS GEE ++ DD+E E L
Sbjct: 741 -ETENQHTEPEKAREKIELGYSSDLSVPSSGEE--------NWEDDSE----GEVDPLTT 787
Query: 570 DDEPFSDSENLSSADDDEPFLASDSTTNVMEINETISATGCSNDKSDAMKNIYENVN-KL 628
+ + + E+ S++ + DST N+ ET SA S N + N N KL
Sbjct: 788 SSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLPHNSFLNANRKL 847
Query: 629 ENSGVGNDTS-----EPVSDTNECQTVLDNKGSVLGESAALSVGSETTLGSAESTRDQSE 683
S G+ + E S+ + T L N+ ++ AL + R
Sbjct: 848 PGSSTGSGSQISALRERKSENDGLVTDLSNRERLILRKQALKMKKRPPFAVG---RSNVV 904
Query: 684 HFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLEIVLHLMRQAVENGSALV 734
+L +Q+NP + NV R +G S++ V+ +++ E G+ LV
Sbjct: 905 TGLARTLKMHFQKNPLAIV---NVKGRANGTSVQEVIAKLKE--ETGALLV 950
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L R +++L +G+ G+T +++ IH W+ KI C+ + ++M + L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNY 347
E +TGG +I+R G + L+RG NY Y
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQY 255
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T DE L + + L +GR G+ ++N+H HWK R KI C
Sbjct: 586 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 645
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
V E LE +GG ++ +G + ++RG+NY
Sbjct: 646 KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNY 679
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 160/411 (38%), Gaps = 71/411 (17%)
Query: 366 PRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ 425
P+L +G+T +E +RK G K+ P LG+ GV+ +N+ ++ ELV+I C
Sbjct: 578 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICN 637
Query: 426 GMNGSDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEW------------------ 463
+ K+ L +L++ E I+++RG+ +
Sbjct: 638 EYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREAL 697
Query: 464 ------------KSSILKPGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGS 511
K +LK N+ E+ V+ S + + G S M++ E
Sbjct: 698 KRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESS-----NMMVEE--- 749
Query: 512 LNTFNSSISP-KGYEEVQSALRENLSS-IDGEEPFSVTKKLSFADDNEQLSADESLSLAD 569
T N P K E+++ +LS GEE ++ DD+E E L
Sbjct: 750 -ETENQHTEPEKAREKIELGYSSDLSVPSSGEE--------NWEDDSE----GEVDPLTT 796
Query: 570 DDEPFSDSENLSSADDDEPFLASDSTTNVMEINETISATGCSNDKSDAMKNIYENVN-KL 628
+ + + E+ S++ + DST N+ ET SA S N + N N KL
Sbjct: 797 SSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLPHNSFLNANRKL 856
Query: 629 ENSGVGNDTS-----EPVSDTNECQTVLDNKGSVLGESAALSVGSETTLGSAESTRDQSE 683
S G+ + E S+ + T L N+ ++ AL + R
Sbjct: 857 PGSSTGSGSQISALRERKSENDGLVTDLSNRERLILRKQALKMKKRPPFAVG---RSNVV 913
Query: 684 HFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSLEIVLHLMRQAVENGSALV 734
+L +Q+NP + NV R +G S++ V+ +++ E G+ LV
Sbjct: 914 TGLARTLKMHFQKNPLAIV---NVKGRANGTSVQEVIAKLKE--ETGALLV 959
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 56/87 (64%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L ++A R ++ +G G+T +++++IH WK K++ +G +++M + L
Sbjct: 361 ELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLL 420
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYR 348
E+RTGG +I+R G + L+RG NYN++
Sbjct: 421 EDRTGGVVIWRSGRSVVLYRGMNYNFQ 447
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + + N+H HWK R KI +G ++ LE + G +I
Sbjct: 787 LMLGRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVLISLDKTT 846
Query: 333 RGGVLYLFRGRNY 345
+G V+ +RG+NY
Sbjct: 847 KGYVIIFYRGKNY 859
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L ++A R ++ +G G+T ++ +IH+ W K++ +G +++M E L
Sbjct: 359 ELRRLRDAALRMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSLNMKRTHEIL 418
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYR 348
E+RTGG +I+R G + L+RG NYN R
Sbjct: 419 EDRTGGTVIWRSGRSIVLYRGMNYNLR 445
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + + N+H HWK R KI KG + ++ LE +GG +I
Sbjct: 785 LMLGRREVFAGTVQNMHLHWKHRELVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTT 844
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG+NY
Sbjct: 845 KGYSIIVYRGKNY 857
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 361 VTPVYPRLIQQVPDGLTL----EEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
V P Y +Q+P L +E T +R+ R+ P LG+N + LA + + +E
Sbjct: 534 VVPDYKPPFRQLPYRTKLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEK 593
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKS 465
+V+I + G+ + ++ +++ L VLIS +E+I+ +RG ++ +
Sbjct: 594 STIVKIAIKRGVPNTCNDRMAEEIKKLTGGVLISRNKEYIIFYRGNDFMT 643
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 200 WTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLT 259
W+GR+P+P D+ LP GV P KP P+ R + R ++ L
Sbjct: 518 WSGRSPIP--------VDADLLP-----GVVPDYKP-PF------RQLPYRTKL---SLR 554
Query: 260 ADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDNVC 318
E+ L A++++ +GR+ + I W++ KI K GV D +
Sbjct: 555 DKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTCNDRMA 614
Query: 319 EQLEERTGGKIIYRRGGVLYLFRGRNY 345
E++++ TGG +I R + +RG ++
Sbjct: 615 EEIKKLTGGVLISRNKEYIIFYRGNDF 641
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L + A R ++ +G G+T ++++IH W+ K++ +G +++M + L
Sbjct: 345 ELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDIL 404
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYR 348
EERTGG +I+R G + L+RG NYN R
Sbjct: 405 EERTGGIVIWRSGRSVVLYRGMNYNLR 431
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + + N+H HWK R K+ KG + ++ LE +GG +I
Sbjct: 770 LMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTT 829
Query: 333 RGGVLYLFRGRNY 345
+G + L+RG+NY
Sbjct: 830 KGYAIILYRGKNY 842
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 372 VPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGS 430
V L +E T +R+ R+ P LG+N + LA + + +E + +I + G+ +
Sbjct: 534 VKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNT 593
Query: 431 DYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILK-----------PGNDSEDAKE 479
++ ++R L VL+S +E+I+ +RG ++ + ++ D E+
Sbjct: 594 CNDRMAEEIRKLTGGVLLSRNKEYIVFYRGNDFITPKVRQVLVEKQEQAITWQDEEELAR 653
Query: 480 SKVDGSISVAPPTAGN 495
K SISV P N
Sbjct: 654 LKASASISVKPKVFKN 669
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 215 EFDSF--QLPPPNK--KGVKPVQKPGPYLPGTGPRY---VSTREEILGEPLTADEVRELV 267
+ DSF QL P K G P+ LPG P Y ++ L E+ L
Sbjct: 488 DIDSFLDQLGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALR 547
Query: 268 ESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDNVCEQLEERTG 326
A++++ +GR+ + I W++ KI K GV D + E++ + TG
Sbjct: 548 RLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTG 607
Query: 327 GKIIYRRGGVLYLFRGRNY 345
G ++ R + +RG ++
Sbjct: 608 GVLLSRNKEYIVFYRGNDF 626
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L ++A R ++ +G G+T +++++IH WK K++ +G +++M + L
Sbjct: 357 ELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLL 416
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYN 346
E+RTGG +I+R G + L+RG NYN
Sbjct: 417 EDRTGGVVIWRSGRSVVLYRGMNYN 441
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + + N+H HWK R KI +G + ++ LE + G +I
Sbjct: 783 LMLGRREVFDGTVQNMHLHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISLDKTS 842
Query: 333 RGGVLYLFRGRNY 345
+G + +RG+NY
Sbjct: 843 KGYAIIFYRGKNY 855
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L+ E+R L + ++L +G+ GLT +++ IH W+ +I C+ + +M
Sbjct: 130 LSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRT 189
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNY 347
+ LE +TGG +++R G + L+RG +Y Y
Sbjct: 190 HDLLERKTGGLVVWRSGSKIILYRGTDYKY 219
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 251 EEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKC-KGV 309
EEI E +T +E L + S L +GR G+ ++N+H HWK R KI C K +
Sbjct: 536 EEINKEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQM 595
Query: 310 CTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRP 351
D+ + + LE +GG +I + + ++RG+NY SRP
Sbjct: 596 SLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNY---SRP 638
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINC-QGMNGSDY 432
+G+T EE +R+ G K+ P LG+ GV+ +N+ ++ ELV+I C + M+ D
Sbjct: 541 EGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDV 600
Query: 433 RKIGAKLRDLVPCVLISFEREH----ILMWRGQEW 463
++I L +LI+ ER + I+++RG+ +
Sbjct: 601 QQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNY 635
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 361 VTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416
V P Y + + +P G LT +E T MR+ G+ L LG+N LA + + +E
Sbjct: 330 VIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWER 389
Query: 417 CELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
CE+V+I + G+ ++ + +++ L LI+ ++E I+ +RG+++
Sbjct: 390 CEIVKIAIKRGVLNTNGELMAEEIKYLTGGTLIARDKEFIVFYRGKDF 437
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 34/223 (15%)
Query: 127 RKISKRE-KTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLRE 185
+ KRE ++ K+ A SN+ + L I G K + +A+ K +
Sbjct: 245 KNFDKRESHSSEKNSVTYAGKSSNVKTAKPAL---IQGVGSPNKVRFQLPGEAELAKDAD 301
Query: 186 AAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKP-VQKPGPYLP-GTG 243
+ + GP + W G PLP D+ LP V P +KP LP G
Sbjct: 302 SLLTGIGPRFID--WWGYDPLP--------VDADLLP-----AVIPGYRKPFRLLPYGVK 346
Query: 244 PRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACK 303
P+ LT DE+ + K +GR+ H + I W+R K
Sbjct: 347 PK------------LTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVK 394
Query: 304 IKCK-GVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
I K GV + + + E+++ TGG +I R + +RG+++
Sbjct: 395 IAIKRGVLNTNGELMAEEIKYLTGGTLIARDKEFIVFYRGKDF 437
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQG-MNGSDYRK 434
L ++A +M+K+ P+ +GK+ + LAK ++ F+ L +N +G G+ ++
Sbjct: 906 LLRKQALKMKKR-----PVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQE 960
Query: 435 IGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKESKVDGSISVAPPTAG 494
+ +KL VL+S E ++++RG W KP S KV ++ P
Sbjct: 961 VVSKLEQETGAVLVSQELNKVILYRG--WGEG-EKP---STAINFDKVGKEVAAKP---- 1010
Query: 495 NGSAPSLTQMLLVEGG 510
G +P L + + VE G
Sbjct: 1011 -GVSPELLEAIRVECG 1025
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 254 LGEPLTAD-EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV 312
L E + D E+R L + ++ + + G+T N++ IH W+ K+KC +
Sbjct: 29 LAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAM 88
Query: 313 DMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
+M V E+LE+RTGG +I+R G L ++RG++Y
Sbjct: 89 NMRKVHEELEKRTGGLVIWRAGAALVIYRGKDY 121
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQ----------LNMGRDGLTHNMLDNIHAHWKRRRA 301
E L +P E RE + +R + Q L GR G+ +++N+H HWK R
Sbjct: 420 EKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLAGRRGVYSGIIENMHLHWKYREL 479
Query: 302 CKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYN 346
K+ KG +D+++ + +E +GG +I +G V +RG+NY
Sbjct: 480 VKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNYR 528
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINC-QGMNGSDYRK 434
L+ E T + + R++ P + +N LAK + + +E E+ ++ Q + +D K
Sbjct: 228 LSDREFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 287
Query: 435 IGAKLRDLVPCVLISFEREHILMWRGQEW 463
+ +L+ L CVL+ E+ H++ +RG+++
Sbjct: 288 MADELKRLTGCVLLGREKTHMIFYRGKDF 316
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L A R + +G G+T ++ +IH W++ KI+C G ++M ++L
Sbjct: 84 ELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINMKQTHDEL 143
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYR 348
E +TGG +++R GG+ L+RG+ Y R
Sbjct: 144 ETKTGGLVVWRTGGMAILYRGKGYFAR 170
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ +++N+H HWK R K+ K V + LE +GG ++
Sbjct: 506 LLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVVTTS 565
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG+NY
Sbjct: 566 KGQAIIVYRGKNYQ 579
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 254 LGEPLTAD-EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV 312
L E + D E+R L + ++ + + G+T N++ IH W+ K+KC +
Sbjct: 28 LAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAM 87
Query: 313 DMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
+M V E+LE+RTGG +I+R G L ++RG++Y
Sbjct: 88 NMRKVHEELEKRTGGLVIWRAGTALVIYRGKDY 120
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQ---------LNMGRDGLTHNMLDNIHAHWKRRRAC 302
E L +P E RE + +R + Q L +GR G+ +++N+H HWK R
Sbjct: 423 EKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLGRRGVYSGIIENMHLHWKYRELV 482
Query: 303 KIKCKGVCTVDMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYN 346
K+ KG +D+++ + +E +GG +I +G V +RG+NY
Sbjct: 483 KVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNYR 530
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINC-QGMNGSDYRK 434
L+ +E T + + R++ P + +N LAK + + +E E+ ++ Q + +D K
Sbjct: 227 LSDKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 286
Query: 435 IGAKLRDLVPCVLISFEREHILMWRGQEW 463
+ +L+ L CVL+ E+ H++ +RG+++
Sbjct: 287 MADELKRLTGCVLLGREKTHMIFYRGKDF 315
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L ++++ + G+T+ +L+NIH W++ ++K V DM E
Sbjct: 204 EELRRLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEI 263
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNYN 346
+E RTGG +I+R G V+ +FRG NY
Sbjct: 264 VERRTGGLVIWRAGSVMVVFRGTNYQ 289
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII- 330
R L +G G+ +++N+H HWK R K+ K +++ + LE +GG ++
Sbjct: 625 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVA 684
Query: 331 ---YRRGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 685 IERVPKGFALIYYRGKNY 702
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 50/258 (19%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
+ L +E+R L ++ + + GLT +LD IH HW ++K +M
Sbjct: 142 QTLVEEELRRLRTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMK 201
Query: 316 NVCEQLEERTGGKIIYRRGGVLYLFRGRNY------NYRSRPRFPLMLWK---------- 359
+ +E RT G +I+R G ++++RG+NY + S + + WK
Sbjct: 202 LAHQIVEHRTRGLVIWRSGSYMWVYRGKNYQGPVESDATSMEKSEAVWWKGENMTPEEAE 261
Query: 360 -----------------------------PVTPVYPRLIQQVPDG----LTLEEATEMRK 386
P+ P Y ++ +P G LT +E T MRK
Sbjct: 262 FNRMLDGFGPRFVEWWGTGILPVDADSLPPMVPGYKTPLRLLPAGMRPQLTNDELTNMRK 321
Query: 387 KGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPC 445
+ L LG+N LA + +E + +I + G+ ++ + +L+ L
Sbjct: 322 LAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKALTGG 381
Query: 446 VLISFEREHILMWRGQEW 463
L+ + +I+++RG+++
Sbjct: 382 TLLLRNKYYIVIYRGKDF 399
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 261 DEVRELVESAK-RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCE 319
DE R + S R L +G G+ +++N+H HWK R K+ K +++
Sbjct: 524 DEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTAR 583
Query: 320 QLEERTGGKII----YRRGGVLYLFRGRNYN--YRSRPR 352
LE +GG ++ +G L +RG+NY RPR
Sbjct: 584 LLEYESGGILVAIDKVPKGFSLIYYRGKNYRRPMTLRPR 622
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 243 GPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRAC 302
G + +R + L E+R L R+ + +G G+T ++D I WK
Sbjct: 205 GSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIV 264
Query: 303 KIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
K+KC+G ++M + E LE +TGG +I+R G + L+RG +Y
Sbjct: 265 KLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSY 307
Score = 46.2 bits (108), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + LE +GG ++
Sbjct: 664 LLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVS 723
Query: 333 RGGVLYLFRGRNY 345
+G + +FRG++Y
Sbjct: 724 KGFAIVVFRGKDY 736
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 642 PESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQV 701
Query: 433 RKIGAKLRDLVPCVLISFEREH----ILMWRGQEWKS-SILKPGN 472
+K L VL+S ++ I+++RG++++ S L+P N
Sbjct: 702 KKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKN 746
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 243 GPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRAC 302
G + +R + L E+R L R+ + +G G+T ++D I WK
Sbjct: 205 GSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIV 264
Query: 303 KIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
K+KC+G ++M + E LE +TGG +I+R G + L+RG +Y
Sbjct: 265 KLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSY 307
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + LE +GG ++
Sbjct: 664 LLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVS 723
Query: 333 RGGVLYLFRGRNY 345
+G + +FRG++Y
Sbjct: 724 KGFAIVVFRGKDY 736
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 642 PESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQV 701
Query: 433 RKIGAKLRDLVPCVLISFEREH----ILMWRGQEWKS-SILKPGN 472
+K L VL+S ++ I+++RG++++ S L+P N
Sbjct: 702 KKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKN 746
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E++ L A R ++ +G G+T +++D IH WK K+K + + +M E L
Sbjct: 368 ELKRLRNVALRMLERIKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEIL 427
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYR 348
E RTGG II+R G + ++RG Y ++
Sbjct: 428 ESRTGGLIIWRSGSSVVMYRGTTYKFQ 454
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 260 ADEVRELVESAKRSSR-QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVC 318
+DE R L S + L +GR G+ ++N+H HWK R KI + + ++
Sbjct: 781 SDEERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHIA 840
Query: 319 EQLEERTGGKII----YRRGGVLYLFRGRNY 345
LE +GG ++ +G + ++RG+NY
Sbjct: 841 ISLEAESGGVLVSVDRTTKGYAIIVYRGKNY 871
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E++ L++ + +GR G+T ++D IH WK ++K +G ++M +
Sbjct: 211 LPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNMKRM 270
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE +TGG +I+R G + L+RG +Y
Sbjct: 271 HEILERKTGGLVIWRSGNSVSLYRGVSY 298
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + + LE +GG ++
Sbjct: 649 LLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVS 708
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG++Y
Sbjct: 709 KGYSVIVYRGKDYQ 722
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 627 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQV 686
Query: 433 RKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+KI L VL+S ++ ++++RG++++ S L+P N
Sbjct: 687 KKIALALEAESGGVLVSVDKVSKGYSVIVYRGKDYQRPSTLRPKN 731
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 273 SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYR 332
+ +++ + + G+T ++D IH WKR ++ C+ + DM + LE +TGG +++R
Sbjct: 164 TKKKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVVWR 223
Query: 333 RGGVLYLFRGRNYNY 347
G + L+RG +Y Y
Sbjct: 224 SGTKIILYRGADYKY 238
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI C G ++ + LE +GG ++ R
Sbjct: 582 LLLGRRGVFDGTVENMHLHWKYRELVKIICNGSLE-EVHQIALTLEAESGGILVAVERVR 640
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG+NY+
Sbjct: 641 KGFAIIVYRGKNYS 654
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRK 434
LT +E T +++ G+ L LG+N LA + + +E CE+V+I + G+ + +
Sbjct: 369 LTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKI 428
Query: 435 IGAKLRDLVPCVLISFEREHILMWRGQEW 463
+ +L+ L +L+S +RE + +RG+++
Sbjct: 429 MAKELKHLTGGILLSRDREFFVFYRGKDY 457
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 231 PVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLD 290
P ++P P P PR + + L A E+R L +A R + +G G+T +++
Sbjct: 143 PWERPMPP-PEAAPRSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVE 201
Query: 291 NIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
I WK ++K G ++M E LE +TGG +I+R G + L+RG +Y+
Sbjct: 202 KIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYD 257
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K D+ + LE +GG ++
Sbjct: 603 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVS 662
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG+NY S RPR
Sbjct: 663 KGYAIVVFRGKNYRRPSSLRPR 684
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
+L K T + P + P+ +T EE RK G ++ LG+ GV+ +N+ ++
Sbjct: 564 VLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 623
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKP 470
ELV+I + + +D ++I L +L+S ++ I+++RG+ ++ S L+P
Sbjct: 624 YRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRP 683
Query: 471 GN 472
N
Sbjct: 684 RN 685
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L + ++ +G G+T ++D IH WK ++K G ++M + E L
Sbjct: 241 ELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEIL 300
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
E +TGG +I+R G L L+RG +Y P+F ++K
Sbjct: 301 ERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYK 338
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + ++N+H HWK R KI K + N+ QLE +GG ++
Sbjct: 676 LLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVS 735
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 736 KGYAIIVYRGKDY 748
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
Q PD +T EE RK G ++ LG+ V+ +N+ ++ ELV+I + +
Sbjct: 651 QAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSF 710
Query: 430 SDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+ I +L VL+S ++ I+++RG+++K S+L+P N
Sbjct: 711 DHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLLRPKN 758
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 240 PGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
P GPR ++ + L E+R L + R ++ +G G+T +++ I W+
Sbjct: 158 PEAGPRAARSKAWMAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRND 217
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
+IK G ++M E LE +TGG +I+R G + L+RG Y+
Sbjct: 218 EVVRIKVTGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYD 264
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K D+ + LE +GG ++
Sbjct: 611 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVS 670
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG++Y S RPR
Sbjct: 671 KGYAIVVFRGKDYARPSKLRPR 692
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
+L K T + P Q P+ +T EE RK G ++ LG+ GV+ +N+ ++
Sbjct: 572 VLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 631
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEW-KSSILKP 470
ELV+I + + D +KI L +L+S ++ I+++RG+++ + S L+P
Sbjct: 632 YRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRP 691
Query: 471 GN 472
N
Sbjct: 692 RN 693
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L++ + +G G+T +D IH WK ++K +G ++M +
Sbjct: 211 LPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRM 270
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE++TGG +I+R G + L+RG +Y
Sbjct: 271 HEILEKKTGGLVIWRSGNSVSLYRGVSY 298
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I + N
Sbjct: 627 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHV 686
Query: 433 RKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+KI L VL+S ++ IL++RG++++ S+L+P N
Sbjct: 687 KKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMLRPKN 731
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + + LE +GG ++
Sbjct: 649 LLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVS 708
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG++Y
Sbjct: 709 KGYSILVYRGKDYQ 722
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 240 PGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
P GPR ++ + L E+R L + R ++ +G G+T +++ I W+
Sbjct: 4 PEAGPRAARSKAWMAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRND 63
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
+IK G ++M E LE +TGG +I+R G + L+RG Y+
Sbjct: 64 EVVRIKVTGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYD 110
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K D+ + LE +GG ++
Sbjct: 457 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVS 516
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG++Y S RPR
Sbjct: 517 KGYAIVVFRGKDYARPSKLRPR 538
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 371 QVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGS 430
Q P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I + +
Sbjct: 433 QPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFG 492
Query: 431 DYRKIGAKLRDLVPCVLISFER----EHILMWRGQEW-KSSILKPGN 472
D +KI L +L+S ++ I+++RG+++ + S L+P N
Sbjct: 493 DVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPRN 539
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 231 PVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLD 290
P ++P P P PR + + L A E+R L +A R + +G G+T +++
Sbjct: 824 PWERPMPP-PEAAPRSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVE 882
Query: 291 NIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
I WK ++K G ++M E LE +TGG +I+R G + L+RG +Y+
Sbjct: 883 KIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYD 938
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K D+ + LE +GG ++
Sbjct: 1284 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVS 1343
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG+NY S RPR
Sbjct: 1344 KGYAIVVFRGKNYRRPSSLRPR 1365
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
+L K T + P + P+ +T EE RK G ++ LG+ GV+ +N+ ++
Sbjct: 1245 VLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 1304
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKP 470
ELV+I + + +D ++I L +L+S ++ I+++RG+ ++ S L+P
Sbjct: 1305 YRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRP 1364
Query: 471 GN 472
N
Sbjct: 1365 RN 1366
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L ++N+ + G+T +L IH W++ ++K DM E
Sbjct: 217 EELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEI 276
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNY 345
+E RTGG + +R G V+ +FRG NY
Sbjct: 277 VERRTGGLVTWRSGSVMVVFRGTNY 301
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII- 330
R L +G G+ +++N+H HWK R K+ K +++ LE +GG ++
Sbjct: 638 RMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVA 697
Query: 331 ---YRRGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 698 IERVPKGYALIYYRGKNY 715
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L ++N+ + G+T +L IH W++ ++K DM E
Sbjct: 217 EELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEI 276
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNY 345
+E RTGG + +R G V+ +FRG NY
Sbjct: 277 VERRTGGLVTWRSGSVMVVFRGTNY 301
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII- 330
R L +G G+ +++N+H HWK R K+ K +++ LE +GG ++
Sbjct: 638 RMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVA 697
Query: 331 ---YRRGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 698 IERVPKGYALIYYRGKNY 715
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L ++N+ + GLT +++ IH W++ ++K V DM E
Sbjct: 213 EELRRLRRMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKTAHEI 272
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNY 345
E RTGG +I+R G V+ ++RG +Y
Sbjct: 273 TERRTGGLVIWRAGSVMVVYRGSSY 297
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII- 330
R L +G G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 634 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVA 693
Query: 331 ---YRRGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 694 IERVPKGFALIYYRGKNY 711
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L A E+R L +A R + +G G+T +++ I WK ++K G ++M
Sbjct: 174 LPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLF 233
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
E LE +TGG +I+R G + L+RG +Y+
Sbjct: 234 HEILERKTGGLVIWRSGTSVSLYRGVDYD 262
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K D+ + LE +GG ++
Sbjct: 608 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVS 667
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG+NY S RPR
Sbjct: 668 KGYAIVVFRGKNYRRPSSLRPR 689
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I + + +D
Sbjct: 586 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 645
Query: 433 RKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
++I L +L+S ++ I+++RG+ ++ S L+P N
Sbjct: 646 KRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRN 690
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L ++N+ + GLT +++ I+ W++ ++K V DM E +
Sbjct: 247 ELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIV 306
Query: 322 EERTGGKIIYRRGGVLYLFRGRNY 345
E RTGG +I+R G V+ ++RG +Y
Sbjct: 307 ERRTGGMVIWRAGSVMVVYRGLDY 330
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 672 LPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVP 731
Query: 333 RGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 732 KGFALIYYRGKNY 744
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L + +L +GR G+T +++ IH W+ K+KC +++M E L
Sbjct: 329 ELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNMKKAHEDL 388
Query: 322 EERTGGKIIYRRGGVLYLFRGRNY 345
E TGG +I+R G ++RG++Y
Sbjct: 389 ERLTGGLVIWRAGSAAVVYRGKDY 412
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + + LE +GG ++
Sbjct: 772 LLLGRRGVFGGTVENMHLHWKHRELVKILVKAPI-AEAQQTAKMLERESGGILVDIVNTS 830
Query: 333 RGGVLYLFRGRNYNYRS--RPRFPL 355
+G + ++RG+NY S RPR L
Sbjct: 831 KGQAIIVYRGKNYQRPSELRPRHLL 855
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L ++N+ + GLT +++ I+ W++ ++K V DM E +
Sbjct: 247 ELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIV 306
Query: 322 EERTGGKIIYRRGGVLYLFRGRNY 345
E RTGG +I+R G V+ ++RG +Y
Sbjct: 307 ERRTGGMVIWRAGSVMVVYRGLDY 330
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G G+ +++N+H HWK R K+ K +++ LE +GG ++
Sbjct: 672 LPLGIRGVFDGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYESGGVLVAIEKVP 731
Query: 333 RGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 732 KGFALIYYRGKNY 744
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L + + +G G+T ++D IH WK ++K +G ++M +
Sbjct: 212 LPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRM 271
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE +TGG +I+R G + L+RG +Y
Sbjct: 272 HEILENKTGGLVIWRSGATVSLYRGVSY 299
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + + LE +GG ++
Sbjct: 653 LLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKIS 712
Query: 333 RGGVLYLFRGRNYN 346
+G + ++RG++Y
Sbjct: 713 KGYAIIVYRGKDYQ 726
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
Q P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I + +
Sbjct: 628 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSF 687
Query: 430 SDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+KI L VL+S ++ I+++RG++++ S+L+P N
Sbjct: 688 EQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKN 735
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 276 QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGG 335
+L +GR G+T +++ IH W+ K+KC +++M E LE TGG +I+R G
Sbjct: 51 RLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGS 110
Query: 336 VLYLFRGRNYNY 347
++RG++Y +
Sbjct: 111 AAVVYRGKDYVH 122
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + + + + LE +GG ++
Sbjct: 461 LLLGRRGVFSGTVENMHLHWKYRELVKILVK-TSLPEAERIAKILENESGGILVDIITTS 519
Query: 333 RGGVLYLFRGRNYNYRS--RPRFPL 355
+G + ++RG+NY S RPR L
Sbjct: 520 KGQAIVMYRGKNYQRPSELRPRHLL 544
>gi|224143617|ref|XP_002325017.1| predicted protein [Populus trichocarpa]
gi|222866451|gb|EEF03582.1| predicted protein [Populus trichocarpa]
Length = 152
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 141 EKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLRE 185
E P K++I ++EDG+SYV D PFEFKYS E K KPLKLRE
Sbjct: 9 EPPNDMKADIKLSEDGVSYVRDATPFEFKYSCMETQKVKPLKLRE 53
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDM---DNVCEQLEERTGGKIIYRR 333
+ +G GL ++L ++ + W+ K++ M VC LE+RTGG +++R
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKLRIVSRANKYMPYITQVCAALEQRTGGLVVWRA 198
Query: 334 GGVLYLFRGRNYNYRS---RPRFPLM-------LWKPVTPVYPR 367
GG ++LFRG Y+ S RP P +W P P R
Sbjct: 199 GGSIWLFRGAGYDAASPSGRPGLPHTRARVTPRVWPPARPTAER 242
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 218 SFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQL 277
S +LP ++ ++ V+ YL G + E+ L E++ L A R ++
Sbjct: 294 SIELPWEKERVMESVE---GYLRGK-----RSNTELAERMLPEHELKRLRNVALRMYERI 345
Query: 278 NMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVL 337
+G G+ +++D +H W+ K+K + + +M E LE RTGG +I+R G +
Sbjct: 346 KVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSFNMRRTHEILENRTGGLVIWRSGSSV 405
Query: 338 YLFRGRNY 345
L+RG +Y
Sbjct: 406 VLYRGISY 413
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G+ G+ ++N+H HWK R K+ +G + ++ LE +GG ++
Sbjct: 761 LFLGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTT 820
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG+NY
Sbjct: 821 KGYAIIVYRGKNY 833
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 379 EEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAK 438
EE RK G + P LGK GVY +N+ ++ ELV++ +G + + + I
Sbjct: 745 EERFLFRKIGLSMKPYLFLGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAIS 804
Query: 439 LRDLVPCVLISFERE----HILMWRGQEWKS-SILKPGN 472
L VL+S ER I+++RG+ + +++P N
Sbjct: 805 LEAESGGVLVSIERTTKGYAIIVYRGKNYLHPEVMRPKN 843
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 357 LWKPVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE 412
L V P Y + +P G LT +E T R+ R + P LG+N LAK + +
Sbjct: 506 LLLAVDPGYKPPFRLLPYGVRHCLTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVK 565
Query: 413 AFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW 463
+E +V+I + G+ + ++ +L+ L +L+S +E+I+ +RG ++
Sbjct: 566 LWERSAIVKIAIKRGVQNTRNERMAEELKVLTGGILLSRNKEYIVFYRGNDF 617
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 263 VRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLE 322
+R L R ++++ + GLT +++ IH W++ ++K DM E +E
Sbjct: 189 LRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVE 248
Query: 323 ERTGGKIIYRRGGVLYLFRGRNYN 346
RTGG + +R G V+ ++RG +Y
Sbjct: 249 RRTGGLVTWRSGSVMMVYRGIDYQ 272
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G G+ +++N+H HWK R K+ K +++ LE +GG ++
Sbjct: 608 LPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTVAFVEDTARLLEYESGGILVAIEKVS 667
Query: 333 RGGVLYLFRGRNYN 346
+ L +RG+NY
Sbjct: 668 KEFALIYYRGKNYK 681
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 263 VRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLE 322
+R L R ++++ + GLT +++ IH W++ ++K DM E +E
Sbjct: 190 LRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVE 249
Query: 323 ERTGGKIIYRRGGVLYLFRGRNYN 346
RTGG + +R G V+ ++RG +Y
Sbjct: 250 RRTGGLVTWRSGSVMMVYRGIDYQ 273
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G G+ +++N+H HWK R K+ K +++ LE +GG ++
Sbjct: 608 LPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVS 667
Query: 333 RGGVLYLFRGRNY 345
+ L +RG+NY
Sbjct: 668 KEFALIYYRGKNY 680
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 283 GLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRG 342
G+T ++D+IH WK ++K +G ++M + E LE +TGG +I+R G + L+RG
Sbjct: 130 GVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRSGTSVSLYRG 189
Query: 343 RNY 345
+Y
Sbjct: 190 VSY 192
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + + LE +GG ++
Sbjct: 545 LLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVDRVS 604
Query: 333 RGGVLYLFRGRNYNYRSRPR 352
+G + +FRG++Y S+ R
Sbjct: 605 KGYAIIVFRGKDYQRPSKLR 624
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
Q P+ +T EE RK G ++ LG+ GV+ +N+ ++ ELV+I + N
Sbjct: 520 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNI 579
Query: 430 SDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+KI L +L+S +R I+++RG++++ S L+PGN
Sbjct: 580 EQVKKIALALEAESGGILVSVDRVSKGYAIIVFRGKDYQRPSKLRPGN 627
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L R++ ++ + G+T +D I WK ++K +G ++M +
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 280
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE++TGG +I+R G + L+RG +Y
Sbjct: 281 HEILEKKTGGLVIWRSGTSISLYRGVSY 308
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E++ L A R ++ +G G+T +++ IH W+ K+K +++M E L
Sbjct: 248 ELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVL 307
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYNYRSRPRF 353
E++TGG +I+R G + L+RG +Y + F
Sbjct: 308 EKKTGGLVIWRSGSSVVLYRGISYKLKCVQTF 339
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + ++N+H HWK R K+ +G + ++ LE +GG ++
Sbjct: 666 LLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTM 725
Query: 333 RGGVLYLFRGRNYN--YRSRP 351
+G + L+RG+NY +R RP
Sbjct: 726 KGYAIILYRGKNYQMPFRLRP 746
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L + R ++ +G G+T ++ I WK ++K G ++M E L
Sbjct: 174 ELRRLRHATMRIKSRIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPALNMRLFHEIL 233
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYN 346
E +TGG +I+R G + L+RG Y+
Sbjct: 234 ERKTGGLVIWRSGTSVSLYRGVAYD 258
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K ++ + LE +GG ++
Sbjct: 605 LLLGRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVS 664
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG++Y S RPR
Sbjct: 665 KGYAIVVFRGKDYRRPSMLRPR 686
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
+T EE RK G ++ LG+ GV+ +N+ ++ ELV+I + + ++ ++I
Sbjct: 586 ITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRI 645
Query: 436 GAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
L +L+S ++ I+++RG++++ S+L+P N
Sbjct: 646 ALSLEVESGGILVSVDKVSKGYAIVVFRGKDYRRPSMLRPRN 687
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L R++ ++ + G+T +D I WK ++K +G ++M +
Sbjct: 219 LPESELRRLRNLTFRTASKMRIRGAGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 278
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE++TGG +I+R G + L+RG +Y
Sbjct: 279 HEILEKKTGGLVIWRSGTSISLYRGVSY 306
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + V LE +GG ++
Sbjct: 652 LLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVT 711
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 712 KGYAIIVYRGKDY 724
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
PD +T EE RK G K+ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 630 PDSITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 689
Query: 433 RKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+K+ L +L+S ++ I+++RG+++K ++L+P N
Sbjct: 690 KKVALALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKN 734
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L R++ ++ + G+T +D I WK ++K +G ++M +
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 280
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE++TGG +I+R G + L+RG +Y
Sbjct: 281 HEILEKKTGGLVIWRSGTSISLYRGVSY 308
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + V LE +GG ++
Sbjct: 657 LLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVT 716
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 717 KGYAIIVYRGQDY 729
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G K+ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 635 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 694
Query: 433 RKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+K+ L +L+S ++ I+++RGQ++K ++L+P N
Sbjct: 695 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKN 739
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L E+R L R++ ++ + G+T +D I WK ++K +G ++M +
Sbjct: 190 LPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 249
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E LE++TGG +I+R G + L+RG +Y
Sbjct: 250 HEILEKKTGGLVIWRSGTSISLYRGVSY 277
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K + V LE +GG ++
Sbjct: 626 LLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVT 685
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 686 KGYAIIVYRGQDY 698
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 373 PDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
P+ +T EE RK G K+ LG+ GV+ +N+ ++ ELV+I +
Sbjct: 604 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 663
Query: 433 RKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKPGN 472
+K+ L +L+S ++ I+++RGQ++K ++L+P N
Sbjct: 664 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKN 708
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 254 LGEPLTADEV-RELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV 312
L E DE+ R L ++++ + GLT +++ IH W+++ ++K
Sbjct: 208 LAELTLEDELLRRLRREGMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAK 267
Query: 313 DMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYN 346
+M + +E RTGG + +R G V+ ++RG+NY
Sbjct: 268 NMRIAHQIVERRTGGLVTWRAGSVMIVYRGKNYQ 301
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T +E + R L +G G+ +++N+H HWK R K+ K ++
Sbjct: 619 ETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELVKLVTKQKNRAFVE 678
Query: 316 NVCEQLEERTGGKIIY-----RRGGVLYLFRGRNYN--YRSRPR 352
+ LE +GG ++ + ++Y +RG+NY RPR
Sbjct: 679 DTARLLEYESGGILVAIEKVSKEFAIIY-YRGKNYKRPLTLRPR 721
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L +A R + +G G+T ++ I W+ ++K G ++M E L
Sbjct: 189 ELRRLRHAAMRIKSKTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPALNMRLFHEIL 248
Query: 322 EERTGGKIIYRRGGVLYLFRGRNYN 346
E +TGG +I+R G + L+RG Y+
Sbjct: 249 ERKTGGLVIWRSGTSVSLYRGVAYD 273
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K D+ LE +GG ++
Sbjct: 620 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVS 679
Query: 333 RGGVLYLFRGRNYNYRS--RPR 352
+G + +FRG++Y S RPR
Sbjct: 680 KGYAIVVFRGKDYKRPSMLRPR 701
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
+L K T + P + P+ +T EE RK G ++ LG+ GV+ +N+ ++
Sbjct: 581 VLGKVETALKPTEDTKPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 640
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFER----EHILMWRGQEWKS-SILKP 470
ELV+I + + +D ++ L VL+S ++ I+++RG+++K S+L+P
Sbjct: 641 YRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVVFRGKDYKRPSMLRP 700
Query: 471 GN 472
N
Sbjct: 701 RN 702
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L ++ + + G+T + + IH W++ ++K DM E
Sbjct: 191 EELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHEL 250
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNY 345
+E RTGG II+R G V+ ++RG NY
Sbjct: 251 VERRTGGLIIWRSGSVMVVYRGSNY 275
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYR---- 332
L +G G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 620 LPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVP 679
Query: 333 RGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 680 KGYALIFYRGKNY 692
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 258 LTAD--EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
LT D E+R L ++ + + G+T + + IH W++ ++K DM
Sbjct: 178 LTMDDAELRRLRGMGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMK 237
Query: 316 NVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E +E RTGG II+R G V+ ++RG NY
Sbjct: 238 TAHELVERRTGGLIIWRAGSVMVVYRGNNY 267
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYR---- 332
L +G G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 612 LPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVNETARLLEYESGGILVAVERVP 671
Query: 333 RGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 672 KGYALIFYRGKNY 684
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 261 DEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQ 320
+E+R L ++ + + G+T + + IH W++ ++K DM E
Sbjct: 188 EELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHEL 247
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNY 345
+E RTGG II+R G V+ ++RG NY
Sbjct: 248 VERRTGGLIIWRSGSVMVVYRGSNY 272
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 617 LPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVT 676
Query: 333 RGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 677 KGYALIFYRGKNY 689
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 258 LTAD--EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
LT D E+R L ++ + + G+T + + IH W++ ++K DM
Sbjct: 175 LTMDDVELRRLRGMGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMK 234
Query: 316 NVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
E +E RTGG II+R G V+ ++RG NY
Sbjct: 235 TAHELVERRTGGLIIWRAGSVMVVYRGSNY 264
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +TA+E + L +G G+ +++N+H HWK R K+ K ++
Sbjct: 588 EMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVE 647
Query: 316 NVCEQLEERTGGKIIYR----RGGVLYLFRGRNY 345
LE +GG ++ +G L +RG+NY
Sbjct: 648 ETARLLEYESGGILVAIERVPKGHALIFYRGKNY 681
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 283 GLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRG 342
G+T + + IH W++ ++K DM E +E RTGG II+R G V+ ++RG
Sbjct: 13 GVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVVYRG 72
Query: 343 RNY 345
NY
Sbjct: 73 SNY 75
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +G G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 420 LPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVT 479
Query: 333 RGGVLYLFRGRNYN--YRSRPR 352
+G L +RG+NY RPR
Sbjct: 480 KGYALIFYRGKNYRRPINIRPR 501
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +++ L + ++ + +GR G+ + N+H HWK+ +I C + +
Sbjct: 225 LTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEM 284
Query: 318 CEQLEERTGGKII-YRRGGVLYLFRGRNYNYRSRPRFPLML 357
E LE +GG +I +G + ++RGRNY R + P++
Sbjct: 285 GETLERLSGGIVIDIHQGTTIIMWRGRNYK-RPKVDIPIIF 324
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
LT E+ ++K G K +G+ G+Y +N+ ++ E VRI+C +++
Sbjct: 225 LTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEM 284
Query: 436 GAKLRDLVPCVLISFER-EHILMWRGQEWK 464
G L L ++I + I+MWRG+ +K
Sbjct: 285 GETLERLSGGIVIDIHQGTTIIMWRGRNYK 314
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 276 QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGG 335
+ +G G+TH ++D IH W K K + +M + LE +TGG +++R G
Sbjct: 8 RFGVGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGS 67
Query: 336 VLYLFRGRNY 345
+ L+RG +Y
Sbjct: 68 SIVLYRGMSY 77
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 262 EVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQL 321
E+R L + A R + ++G G+T ++ ++H W+ K K + M + L
Sbjct: 205 ELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSAHMKKAHQIL 264
Query: 322 EERTGGKIIYRRGGVLYLFRGRNY 345
E + GG +I+R G + L+RG Y
Sbjct: 265 ESKIGGIVIWRSGSSIVLYRGMAY 288
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII-----Y 331
L +GR + ++N+H HWK R K+ KG + + ++ LE +GG ++
Sbjct: 636 LLLGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDT 695
Query: 332 RRGGVLYLFRGRNY 345
R + ++RG+NY
Sbjct: 696 RGHHTIIVYRGKNY 709
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYR 433
+ LT EE RK G + P LG+ VY +N+ ++ ELV++ +G N + +
Sbjct: 615 ETLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVK 674
Query: 434 KIGAKLRDLVPCVLISFERE-----HILMWRGQEWKS-SILKPGN 472
I L VL+S +++ I+++RG+ + S +++P N
Sbjct: 675 HISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVVRPKN 719
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ ++S + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 184 EVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVK 243
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + G + ++RG+NY
Sbjct: 244 EIASELAILSGGIVLSIQEGNTIIMYRGKNY 274
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D++ LE +GG ++
Sbjct: 405 LLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVS 464
Query: 333 RGGVLYLFRGRNY 345
+ + ++RG+NY
Sbjct: 465 KAHAIIIYRGKNY 477
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 217 DSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGE---PLTADEVRELVESAKRS 273
+ F+L P + VK ++ L G GPR+ + G P+ AD + +V +RS
Sbjct: 156 NKFRLQLPGE--VKLAEEADKLLDGLGPRF----SDWWGYDPLPVDADLLPAIVPGYRRS 209
Query: 274 SRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDNVCEQLEERTGGKIIYR 332
S N+ GL +M+ W+R K+ K G +D D + E+L+ TGG ++ R
Sbjct: 210 S---NL--QGLAASMI----KLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSR 260
Query: 333 RGGVLYLFRGRNY 345
+ +RG+++
Sbjct: 261 DNESIVFYRGKDF 273
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI CK D++ LE +GG ++
Sbjct: 405 LLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVS 464
Query: 333 RGGVLYLFRGRNY 345
+ + ++RG+NY
Sbjct: 465 KAHAIIIYRGKNY 477
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 217 DSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGE---PLTADEVRELVESAKRS 273
+ F+L P + VK ++ L G GPR+ + G P+ AD + +V +RS
Sbjct: 156 NKFRLQLPGE--VKLAEEADKLLDGLGPRF----SDWWGYDPLPVDADLLPAIVPGYRRS 209
Query: 274 SRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDNVCEQLEERTGGKIIYR 332
S N+ GL +M+ W+R K+ K G +D D + E+L+ TGG ++ R
Sbjct: 210 S---NL--QGLAASMI----KLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSR 260
Query: 333 RGGVLYLFRGRNY 345
+ +RG+++
Sbjct: 261 DNESIVFYRGKDF 273
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E+ L +++++ + GLT ++L IH W K+K +M+
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRG 342
++ RTGG +I+R G V++++RG
Sbjct: 166 HNIVQRRTGGLVIWRSGSVMWVYRG 190
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ ++S + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 177 EVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVK 236
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + G + ++RG+NY
Sbjct: 237 EIASELARLSGGIVLDIQEGNTIIMYRGKNY 267
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ ++S + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 177 EVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVK 236
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + G + ++RG+NY
Sbjct: 237 EIASELARLSGGIVLDIQEGNTIIMYRGKNY 267
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 247 VSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKC 306
V T E+ +P+ + +R A + + + + + G+T +++D IH WK +K
Sbjct: 194 VVTAAELTLDPMLLERLRG---EAVKMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKF 250
Query: 307 KGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSR 350
+MD E LE +T G +I+ + L ++RG NY S+
Sbjct: 251 DMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYRGSNYQSTSK 294
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T +E + ++ L +GR G+ +++ +H HWK R K+ +
Sbjct: 633 EMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVL 692
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
+ LE +GG ++ + G + ++RG+NY
Sbjct: 693 YTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNY 726
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + ++N+H HWK R K+ +G + ++ LE +GG ++
Sbjct: 624 LLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTM 683
Query: 333 RGGVLYLFRGRNYN--YRSRP 351
+G + L+RG+NY +R RP
Sbjct: 684 KGYAIILYRGKNYQMPFRLRP 704
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L+ E+ L R+ ++ + G+T ++D I WK ++K +G ++M +
Sbjct: 212 LSESELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKSSEIVRLKIEGASALNMRRM 271
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNYR 348
E LE +TGG +I+R G + L YNY+
Sbjct: 272 HEILERKTGGLVIWRSGTSIAL-----YNYK 297
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K V LE +GG ++
Sbjct: 689 LLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAMALEAESGGILVSVDKIS 748
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 749 KGYAVIVYRGKDY 761
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK
Sbjct: 185 EILTEEERHYLKRTGEKKKHYVPVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAH 244
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + ++ +RGRNY
Sbjct: 245 EYTEELTRPSKGIVIDIKPNNIIIFYRGRNY 275
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR + ++N+H HWK R K+ +G + ++ LE +GG ++
Sbjct: 623 LLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTM 682
Query: 333 RGGVLYLFRGRNYN--YRSRP 351
+G + L+RG+NY +R RP
Sbjct: 683 KGYSIILYRGKNYQMPFRLRP 703
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ ++ + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 183 EVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVK 242
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + G + ++RG+NY
Sbjct: 243 EIATELARLSGGIVLDIQDGNTIIMYRGKNY 273
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVD---- 313
L A E+ L +A+ R + G+T +++ + W A + GV V+
Sbjct: 155 LEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQW----AKGQELAGVRIVEPLRR 210
Query: 314 -MDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
MD E LE +TGG +++ RGG+ +++RG +Y
Sbjct: 211 CMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E R + + + +GR G+ +++ IH HWK + K+ K +
Sbjct: 564 ELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQIT 623
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
LE TGG +I + + L+RG+NY
Sbjct: 624 YTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVD---- 313
L A E+ L +A+ R + G+T +++ + W A + GV V+
Sbjct: 155 LEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQW----AKGQELAGVRIVEPLRR 210
Query: 314 -MDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
MD E LE +TGG +++ RGG+ +++RG +Y
Sbjct: 211 CMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E R + + + +GR G+ +++ IH HWK + K+ K +
Sbjct: 564 ELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQIT 623
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
LE TGG +I + + L+RG+NY
Sbjct: 624 YTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ + + +GR G+ ++ N+H HWK+ + ++ K +++
Sbjct: 789 EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVN 848
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L TGG ++ G + ++RG+NY
Sbjct: 849 EIAVELARLTGGIVLDVHEGNTIIMYRGKNY 879
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ ++ + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 41 EVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVK 100
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + G + ++RG+NY
Sbjct: 101 EIAIELATLSGGIVLDIQDGNTIIMYRGKNY 131
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E L + A++ S L +GR GL ++ N+H HWK+ K+ CK +
Sbjct: 172 LTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEY 231
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
++L +GG + G + +RG+NY
Sbjct: 232 AQELARLSGGIPLQIIGDDTIIFYRGKNY 260
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ +S + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 156 EILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVK 215
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNYN 346
+ +L TGG ++ + ++RG+NY+
Sbjct: 216 EIATELARLTGGIVLGIHEEDTIIMYRGKNYS 247
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ +S + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 156 EILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVK 215
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNYN 346
+ +L TGG ++ + ++RG+NY+
Sbjct: 216 EIATELARLTGGIVLGIHEEDTIIMYRGKNYS 247
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ ++ + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 184 EVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVK 243
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + G + ++RG+NY
Sbjct: 244 EIAIELATLSGGIVLDIQDGNTIIMYRGKNY 274
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
R+ ++ + G+T ++D I WK ++K +G ++M + E LE +TGG +I+
Sbjct: 236 RTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 295
Query: 332 RRGGVLYLFRGRNYNYR 348
R G + L YNY+
Sbjct: 296 RSGTSIAL-----YNYK 307
Score = 45.8 bits (107), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K V LE +GG ++
Sbjct: 684 LLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKIS 743
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 744 KGYAVIVYRGKDY 756
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ +S + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 116 EILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVK 175
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + ++RG+NY
Sbjct: 176 EIATELARLSGGIVLDIHEDNTIIMYRGKNY 206
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ +S + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 96 EILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVK 155
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L +GG ++ + ++RG+NY
Sbjct: 156 EIAAELARLSGGIVLDIHEDNTIIMYRGKNY 186
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L+ E+ L R+ ++ + G+T ++D I WK ++K +G ++M +
Sbjct: 208 LSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRM 267
Query: 318 CEQLEERTGGKIIYRRGGVLYLFRGRNYNYR 348
E LE +TGG +I+R G + L YNY+
Sbjct: 268 HEILERKTGGLVIWRSGTSIAL-----YNYK 293
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ ++N+H HWK R KI K V LE +GG ++
Sbjct: 695 LLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKIS 754
Query: 333 RGGVLYLFRGRNY 345
+G + ++RG++Y
Sbjct: 755 KGYAVIVYRGKDY 767
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +D
Sbjct: 177 EILTEEEKHYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQID 236
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G I R + +RG+NY
Sbjct: 237 EYAEELARLSKGIAIDIRPDNTIIFYRGKNY 267
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ + + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 846 EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVK 905
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ +L TGG ++ G + ++RG+NY
Sbjct: 906 EIAVELARLTGGIVLDVHEGNTIIMYRGKNY 936
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ KI CK +
Sbjct: 104 EMLTEEEKHYLKRTGEKKKNFILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIH 163
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I R + +RG+NY
Sbjct: 164 QYAEELARLSKGIVIDIRPNNSIIFYRGKNY 194
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ + + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 209 EILTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVK 268
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNYN 346
+ +L TGG ++ + ++RG+NY+
Sbjct: 269 EIAAELARLTGGLVLDIHEEDTIIMYRGKNYS 300
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 258 LTADEVRELVES-AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDN 316
+ DE RE + L +GR G+ +L+ +H HWK R K+ + N
Sbjct: 556 IMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVIN 615
Query: 317 VCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPL 355
+ LE +GG ++ + G + ++RG+NY RP L
Sbjct: 616 TAKVLETESGGILVSVDKLKEGHAIIIYRGKNYK---RPSIKL 655
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 227 KGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADE--VRELVESAKRSSRQLNMGRDGL 284
KG P +K + G V + + LT D+ +R L A R + + + G+
Sbjct: 142 KGRMPWEKDEKF----GFVKVKREKAVTAAELTLDKALLRRLRNEAARMRTWIKVKKAGV 197
Query: 285 THNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRN 344
T +++D I W+R IK +MD E +E +TGG ++ + L ++RG N
Sbjct: 198 TQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVETKTGGLVVLSKKDFLVVYRGCN 257
Query: 345 YN 346
++
Sbjct: 258 HH 259
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E + + A++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 454 LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEY 513
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
++ +GG I G + +RG+NY
Sbjct: 514 ANEIARLSGGTPIQIIGDDTIIFYRGKNY 542
>gi|357473479|ref|XP_003607024.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
gi|355508079|gb|AES89221.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
Length = 285
Score = 46.6 bits (109), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 247 VSTREEILG---EPLTADEVRELVESA----KRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
VS REE L L+ E +EL A K+ S QL +G+ G+T N++ + +
Sbjct: 131 VSKREERLKLEVPSLSVKERKELGSYAHSLGKKLSTQL-VGKSGVTPNLVTAFSDNLEAN 189
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
KIK G C ++++V +QLEE TG + + G L L+R
Sbjct: 190 ELLKIKIHGSCPGELEDVVKQLEESTGSVTVGQIGRTLILYR 231
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E R + + + +GR G+ +++ IH HWK + K+ K +
Sbjct: 353 ELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQIT 412
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
LE TGG +I + + L+RG+NY
Sbjct: 413 YTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 446
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 276 QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----Y 331
+L+ GR G+ +++N+H HWK R K+ KG + + + LE +GG ++
Sbjct: 170 KLSSGRRGVFDGVVENMHLHWKHRELVKVIFKG-PIFEAEQTAKILEMESGGVLVGIVTT 228
Query: 332 RRGGVLYLFRGRNYNYRS--RPRFPL 355
+G + +RG+NY S RPR L
Sbjct: 229 TKGQAIIFYRGKNYQRPSELRPRHLL 254
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + +R + +GR G+ ++ N+H HWK K+ CK +
Sbjct: 123 EILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVH 182
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 183 EYAEELARLSKGIVIDIKPNNTIIFYRGKNY 213
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII-YRRGGVL 337
+GR G+ ++ N+H HWK+ + ++ K ++ + +L TGG ++ G +
Sbjct: 134 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTI 193
Query: 338 YLFRGRNY 345
++RG+NY
Sbjct: 194 IMYRGKNY 201
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII-YRRGGVL 337
+GR G+ ++ N+H HWK+ + ++ K ++ + +L TGG ++ G +
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTI 257
Query: 338 YLFRGRNY 345
++RG+NY
Sbjct: 258 IMYRGKNY 265
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK K+ CK
Sbjct: 250 EILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAH 309
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + ++ +RG+NY
Sbjct: 310 EYAEELARLSKGIVIDIKPNSIIIFYRGKNY 340
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 46.2 bits (108), Expect = 0.072, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRGG 335
GR G+ ++N+H HWK R KI K D+ + LE +GG ++ +G
Sbjct: 8 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 67
Query: 336 VLYLFRGRNYNYRS--RPR 352
+ +FRG++Y S RPR
Sbjct: 68 AIVVFRGKDYARPSKLRPR 86
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 46.2 bits (108), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E + + A++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 118 LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEY 177
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
++ +GG I G + +RG+NY
Sbjct: 178 ANEIARLSGGTPIQIIGDDTIIFYRGKNY 206
>gi|413918581|gb|AFW58513.1| hypothetical protein ZEAMMB73_947708, partial [Zea mays]
Length = 208
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L DE+R L R ++L +G+ G+T +++ IH W+ K++C+ V ++M
Sbjct: 143 LPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRT 202
Query: 318 CEQLE 322
E LE
Sbjct: 203 HEILE 207
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E + + A++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 75 LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEY 134
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
++ +GG I G + +RG+NY
Sbjct: 135 ANEIARLSGGTPIQIIGDDTIIFYRGKNY 163
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ + + +GR G+ ++ N+H HWK+ + ++ K ++
Sbjct: 169 EILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVK 228
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNYN 346
+ +L TGG ++ + ++RG+NY+
Sbjct: 229 EIAAELARLTGGIVLDIHEENTIIMYRGKNYS 260
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E ++ + + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 128 EILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVK 187
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNYN 346
+ +L TGG ++ + ++RG+NY+
Sbjct: 188 EIAAELARFTGGIVLDIHEENTIIMYRGKNYS 219
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ +++ +H HWK R K+ ++ + LE +GG ++ +
Sbjct: 632 LTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLK 691
Query: 333 RGGVLYLFRGRNY 345
G + +FRG+NY
Sbjct: 692 EGYAIIIFRGKNY 704
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
A + + + + + G+T ++++ I W+R +K + +MD E +E +TGG +
Sbjct: 201 ASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKFDVPLSRNMDRAREIVEMKTGGMV 260
Query: 330 IYRRGGVLYLFRGRNY 345
++ + L ++RG NY
Sbjct: 261 VWSKKNALVIYRGCNY 276
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YR 332
L +GR G+ +++ +H HWK R K+ ++ + LE +GG ++ +
Sbjct: 632 LTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLK 691
Query: 333 RGGVLYLFRGRNY 345
G + +FRG+NY
Sbjct: 692 EGYAIIIFRGKNY 704
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
A + + + + + G+T ++++ I W+R +K + +MD E +E +TGG +
Sbjct: 201 ASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKFDVPLSRNMDRAREIVEMKTGGMV 260
Query: 330 IYRRGGVLYLFRGRNY 345
++ + L ++RG NY
Sbjct: 261 VWSKKNALVVYRGCNY 276
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 272 RSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII- 330
R + L MG G+ +++N+H HWK R K+ K ++ LE +GG ++
Sbjct: 365 RMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVS 424
Query: 331 ---YRRGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 425 IDRVPKGYALVYYRGKNY 442
Score = 39.7 bits (91), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 40/248 (16%)
Query: 360 PVTPVYPRLIQQVPDG----LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
P P Y + +P G LT E T+MRK + L LG+N + LA + + +E
Sbjct: 121 PSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWE 180
Query: 416 VCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEW----------- 463
+V+I + G+ ++ + + ++ +L VL+ + I+++RG+++
Sbjct: 181 KSLVVKIAVKRGIQNTNNKLMAEEIGNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALTE 240
Query: 464 KSSILKPGNDSEDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKG 523
+ + K D E+ +KV + S++ NG AP+ G+L F + S G
Sbjct: 241 RQELTKQIQDVEEKVRNKVVEATSLSI----NGQAPA---------GTLAEFYEAQSRWG 287
Query: 524 ----YEEVQSALRENLSSIDGEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSEN 579
EE + + E+ + + KL A ++L A++ LS S
Sbjct: 288 REITAEEREKMVEESSRAKTARLVRRIEHKLGVA-QAKKLRAEKLLS------KIEASMI 340
Query: 580 LSSADDDE 587
LSS DDD+
Sbjct: 341 LSSPDDDQ 348
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 156 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVY 215
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 216 EYAEELTRLSKGTVIDIKPNNTIIFYRGKNY 246
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 171 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVY 230
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 231 EYAEELARLSKGTVIDIKPNNTIIFYRGKNY 261
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII-YRRGGVL 337
+GR G+ ++ N+H HWK+ + ++ K ++ + +L TGG ++ +
Sbjct: 64 IGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEENTI 123
Query: 338 YLFRGRNYN 346
++RG+NY+
Sbjct: 124 IMYRGKNYS 132
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 180 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVY 239
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 240 EYAEELTRLSKGTVIDIKPNNTIIFYRGKNY 270
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII-YRRGGVL 337
+GR G+ ++ N+H HWK+ + ++ K ++ + +L TGG ++ +
Sbjct: 134 IGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEENTI 193
Query: 338 YLFRGRNYN 346
++RG+NY+
Sbjct: 194 IMYRGKNYS 202
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 196 EILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVH 255
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 256 EYAEELTRLSKGIVIDIKPNNSIIFYRGKNY 286
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 168 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVY 227
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 228 EYAEELARLSKGTVIDIKPNNTIIFYRGKNY 258
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRG 334
+GR G+ +++ IH HWK + K+ K T + LE TGG +I
Sbjct: 585 LGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTS 644
Query: 335 GVLYLFRGRNYNYRSRPRFPLMLWK 359
+ L+RG+NY ++ F +L K
Sbjct: 645 HAIILYRGKNYRRPAKSSFSNLLTK 669
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 116/327 (35%), Gaps = 85/327 (25%)
Query: 218 SFQLPPPNKKGVKPVQK------PGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK 271
+ +L PP + G V+K P G + RE+ EP A+ E E +
Sbjct: 118 TIELSPPREPGQYVVEKEKSRAVPWAAARDEGLKVALRREKKPREPTRAETELETHELRR 177
Query: 272 RSSRQLNMGR------DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVD-----MDNVCEQ 320
+GR G+T ++ + W A + V V+ MD E
Sbjct: 178 LRRLARGIGRWARAKKAGVTDEVVKEVRREW----ASGEELAAVRIVEPLRRSMDRAREI 233
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNYNYRSR------------------------------ 350
LE +TGG +++ +G + +++RG Y ++
Sbjct: 234 LEIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHKDDAFQENDQSICGQKDEEP 293
Query: 351 ------------------PRFPLMLWKPVTPVYPRLIQQVPDG---------------LT 377
PRF W PV L+ + G L
Sbjct: 294 VKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLA 353
Query: 378 LEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIG 436
EE T +RK R L LG+N LA + + +E + +I + G+ ++ ++
Sbjct: 354 DEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMA 413
Query: 437 AKLRDLVPCVLISFEREHILMWRGQEW 463
L+ L +I ++ I+++RG+++
Sbjct: 414 WNLKHLTGGTVILRNKDFIILYRGKDF 440
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T +E L + + L +GR G+ +++ +H HWK R K+ +
Sbjct: 592 EMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQVI 651
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
+ LE TGG ++ + G + ++RG+NY
Sbjct: 652 RTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNY 685
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
A + + + + + G+T +++D I W+ +K +MD E +E +TGG +
Sbjct: 210 ASKMRKWVKVMKAGVTQSVVDQIRYAWRNNELAMVKFDLPLCRNMDRAREIVELKTGGLV 269
Query: 330 IYRRGGVLYLFRGRNYN 346
++ R L ++RG NY+
Sbjct: 270 VWTRKDSLVIYRGCNYH 286
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV--- 312
E +T +E+ L + R L +GR + +++N+H HWK R+ KI K +
Sbjct: 343 EDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQLVKIIVKKSYFMYRE 402
Query: 313 --DMDNVCEQLEERTGGKII----YRRGGVLYLFRGRNYN 346
D++N+ LE +GG ++ G + ++RG+NY
Sbjct: 403 RDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNYQ 442
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRG 334
+GR G+ +++ IH HWK + K+ K T + LE TGG +I
Sbjct: 585 LGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTS 644
Query: 335 GVLYLFRGRNYNYRSRPRFPLMLWK 359
+ L+RG+NY ++ F +L K
Sbjct: 645 HAIILYRGKNYRRPAKSSFSNLLTK 669
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 117/327 (35%), Gaps = 85/327 (25%)
Query: 218 SFQLPPPNKKGVKPVQK------PGPYLPGTGPRYVSTREEILGEPLTAD------EVRE 265
+ +L PP + G V+K P G + RE+ EP A+ E+
Sbjct: 118 TIELSPPREPGQYVVEKEKSRAVPWAAARDEGLKVALRREKKPREPTRAETELETHELHR 177
Query: 266 LVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVD-----MDNVCEQ 320
L A+ R + G+T ++ + W A + V V+ MD E
Sbjct: 178 LRRLARGIGRWARAKKAGVTDEVVKEVRREW----ASGEELAAVRIVEPLRRSMDRAREI 233
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNYNYRSR------------------------------ 350
LE +TGG +++ +G + +++RG Y ++
Sbjct: 234 LEIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHKDDAFQENDQSICGQKDEEP 293
Query: 351 ------------------PRFPLMLWKPVTPVYPRLIQQVPDG---------------LT 377
PRF W PV L+ + G L
Sbjct: 294 VKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLA 353
Query: 378 LEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIG 436
EE T +RK R L LG+N LA + + +E + +I + G+ ++ ++
Sbjct: 354 DEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMA 413
Query: 437 AKLRDLVPCVLISFEREHILMWRGQEW 463
L+ L +I ++ I+++RG+++
Sbjct: 414 WNLKHLTGGTVILRNKDFIILYRGKDF 440
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 134 EILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVH 193
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 194 EYAEELTRLSKGIVIDIKPNNSIIFYRGKNY 224
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E L + +++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 172 LDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 231
Query: 318 CEQLEERTGGKIIYRRGG-VLYLFRGRNY 345
++ +GG I G + +RG+NY
Sbjct: 232 ASEIARLSGGIPINTIGNDTIVFYRGKNY 260
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
E+ LT +E + + A++ S + +GR G+ ++ N+H HWK+ K+ C C
Sbjct: 107 EVKPHELTGEERFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNSSCK 166
Query: 312 -VDMDNVCEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
+ +++ +GG I G + +RG+NY
Sbjct: 167 PGQVQEFAQEIARLSGGIPIQIIGDDTVIFYRGKNY 202
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK K+ CK +
Sbjct: 123 EILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVH 182
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 183 EYAEELARLSKGIVIDIKPNNTIIFYRGKNY 213
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E L + +++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 172 LDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 231
Query: 318 CEQLEERTGGKIIYRRGG-VLYLFRGRNY 345
++ +GG I G + +RG+NY
Sbjct: 232 ASEIARLSGGIPINTIGNDTIVFYRGKNY 260
>gi|357488365|ref|XP_003614470.1| CRS2-associated factor [Medicago truncatula]
gi|355515805|gb|AES97428.1| CRS2-associated factor [Medicago truncatula]
Length = 248
Score = 44.3 bits (103), Expect = 0.32, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 399 KNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAK 438
KNGVY L K+ +AF V+I+C+G++ DY+K+G+K
Sbjct: 120 KNGVYIMLVKDAGDAFGRSRFVKIDCKGLDPGDYKKLGSK 159
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E L + +++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 172 LDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 231
Query: 318 CEQLEERTGGKIIYRRGG-VLYLFRGRNY 345
++ +GG I G + +RG+NY
Sbjct: 232 ASEIARLSGGIPINTIGNDTIVFYRGKNY 260
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 168 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVY 227
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 228 EYAEELTRLSKGTVIDIKPNNTIMFYRGKNY 258
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
E+ LT +E + + A++ S + +GR G+ ++ N+H HWK+ K+ C
Sbjct: 138 EVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVICNFCKP 197
Query: 312 VDMDNVCEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
+ +++ +GG I G + +RG+NY
Sbjct: 198 GQVHEYAQEIARLSGGIPIQVIGDDTIIFYRGKNY 232
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 41/255 (16%)
Query: 248 STREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
+T E IL E L RE A + + +N+ + G+T +++ I + WK ++
Sbjct: 201 TTAELILDEGLLNRLRRE----ASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFD 256
Query: 308 GVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGR-NYNYRSR---------------- 350
+M+ E +E +TGG ++ + L ++RG +Y+ +
Sbjct: 257 VPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSSEGQDEISSSLYEREADRLL 316
Query: 351 ----PRFPLMLWKPVTPVYPRLIQQVPDG---------------LTLEEATEMRKKGRKL 391
PR+ + PV L+ +V +G LT EE T +R + L
Sbjct: 317 DGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPL 376
Query: 392 IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISF 450
LG+N LA + + +E C + +I + G ++ ++ +LR L VLI
Sbjct: 377 PFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILR 436
Query: 451 EREHILMWRGQEWKS 465
+ I+++RG+++ S
Sbjct: 437 NKYLIVLYRGKDFLS 451
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + + L +GR G+ +++ +H HWK R K+ +
Sbjct: 570 EILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVV 629
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLM 356
+ LE + G +I + G + ++RG+NY RP LM
Sbjct: 630 YTAKALETESNGVLISIEKLKEGHAILIYRGKNYK---RPSSKLM 671
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 120 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQVY 179
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G +I + + +RG+NY
Sbjct: 180 EYAEELARLSKGIMIDIKPNNTIIFYRGKNY 210
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E + + + +GR G+ +++ IH HWK + K+ K +
Sbjct: 577 ELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQIT 636
Query: 316 NVCEQLEERTGGKIIYRR----GGVLYLFRGRNYN 346
LE TGG +I + + L+RG+NY+
Sbjct: 637 YTSMLLEVETGGMLIATQKLTNSHAIILYRGKNYH 671
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E + + + +GR G+ +++ IH HWK + K+ K +
Sbjct: 577 ELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQIT 636
Query: 316 NVCEQLEERTGGKIIYRR----GGVLYLFRGRNYN 346
LE TGG +I + + L+RG+NY+
Sbjct: 637 YTSMLLEVETGGMLIATQKLTNSHAIILYRGKNYH 671
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + ++ + +GR G+ ++ N+H HWK K+ CK +
Sbjct: 169 EILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVY 228
Query: 316 NVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
E+L + G II + + +RG+NY
Sbjct: 229 EYAEELTRLSKGTIIDIKPNNTIMFYRGKNY 259
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT +E + + ++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 168 LTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEY 227
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
+++ +GG I G + +RG++Y
Sbjct: 228 AQEIARLSGGIPIQIIGDDTIIFYRGKDY 256
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 380 EATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG-SDYRKIGAK 438
EA + G K +GK G+Y + N+ ++ E VRI C N + R+IGA+
Sbjct: 129 EAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEETRRIGAE 188
Query: 439 LRDLVPCVLIS-FEREHILMWRGQEWKS 465
L L +++ E ++M+RG+ +++
Sbjct: 189 LARLSGGIVLDVLEDRTVIMFRGKNYQT 216
Score = 40.4 bits (93), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKC-KGVCTVDM 314
EPL+ E ++ ++G+ G+ ++ NIH +WK +IKC + +
Sbjct: 123 EPLSEGEAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEET 182
Query: 315 DNVCEQLEERTGGKII-YRRGGVLYLFRGRNYN 346
+ +L +GG ++ + +FRG+NY
Sbjct: 183 RRIGAELARLSGGIVLDVLEDRTVIMFRGKNYQ 215
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV--D 313
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK C
Sbjct: 169 ESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKP-CNKPGQ 227
Query: 314 MDNVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ E+L + G +I + + L+RG+NY
Sbjct: 228 VHEYAEELARLSKGIVIDVKPNNTIVLYRGKNY 260
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV--D 313
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK C
Sbjct: 180 ESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKP-CNKPGQ 238
Query: 314 MDNVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ E+L + G +I + + L+RG+NY
Sbjct: 239 VHEYAEELARLSKGIVIDVKPNNTIVLYRGKNY 271
>gi|225427732|ref|XP_002265886.1| PREDICTED: uncharacterized protein LOC100243481 [Vitis vinifera]
gi|297744749|emb|CBI38011.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 258 LTADEVRELVESAKRSSRQLN---MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDM 314
LT E +EL A ++L +G+ G+T ++ + + KIK G C ++
Sbjct: 145 LTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENLESNELLKIKIHGTCPGEL 204
Query: 315 DNVCEQLEERTGGKIIYRRGGVLYLFR 341
+V +QLEE TG ++ + G + L+R
Sbjct: 205 PDVVKQLEESTGSVVVGQIGRSVILYR 231
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTV--D 313
E LT +E L + ++ + +GR G+ ++ N+H HWK+ K+ CK C
Sbjct: 180 ESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKP-CNKPGQ 238
Query: 314 MDNVCEQLEERTGGKII-YRRGGVLYLFRGRNY 345
+ E+L + G +I + + L+RG+NY
Sbjct: 239 VHEYAEELARLSKGIVIDVKPNNTIVLYRGKNY 271
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E + + + +GR G+ +++ IH HWK + K+ K + +
Sbjct: 578 ELLTEEERMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQIT 637
Query: 316 NVCEQLEERTGGKIIYRR----GGVLYLFRGRNY 345
LE TGG +I + + L+RG+NY
Sbjct: 638 YTSMLLEVETGGVLIATQKLPHSHAIILYRGKNY 671
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 19/114 (16%)
Query: 245 RYVSTREEILGEPLTADEVREL----VESAKRSSRQLNMG----RDGLTHNMLDNIHAHW 296
+ V RE+ + EP A+ REL +E +R++R ++ + G+T +++++ + W
Sbjct: 144 KVVLRREKKVREPTRAE--RELGPALLERLRRAARGMDRWARAKKAGVTDEVVEDVRSEW 201
Query: 297 KRRRACKIKCKGVCTVD-----MDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
+ + GV V+ MD E LE +TGG +++ +G + +++RG +Y
Sbjct: 202 ----SSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDY 251
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + + L +GR G+ +++ +H HWK R K+ +
Sbjct: 568 EILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVV 627
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLM 356
+ LE + G +I + G + ++RG+NY RP LM
Sbjct: 628 YTAKALETESNGVLISIEKLKEGHAILIYRGKNYK---RPSSKLM 669
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRG 334
+GR G+ +++ IH HWK + K+ K + LE TGG +I
Sbjct: 598 LGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLTTS 657
Query: 335 GVLYLFRGRNYNYRSRPRFPLMLWK 359
+ L+RG+NY ++ F +L K
Sbjct: 658 HAIILYRGKNYRRPAKSSFSNLLTK 682
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 42.7 bits (99), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L+ +E L + +++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 232
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
++ +GG + G + +RG+NY
Sbjct: 233 ANEIARLSGGIPVNIIGDDTIVFYRGKNY 261
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +TA+E + L +G G+ +++N+H HWK R K+ K ++
Sbjct: 45 EMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVE 104
Query: 316 NVCEQLEERTGGKIIYR----RGGVLYLFRGRNY 345
LE +GG ++ +G L +RG+NY
Sbjct: 105 ETARLLEYESGGILVAIERVPKGHALIFYRGKNY 138
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
E+ +T +E L + ++ S + +GR G+ ++ N+H HWK+ K+ C
Sbjct: 158 EVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKP 217
Query: 312 VDMDNVCEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
+ E+L + +GG + G + +RG+ Y
Sbjct: 218 GQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGY 252
>gi|302391360|ref|YP_003827180.1| hypothetical protein [Acetohalobium arabaticum DSM 5501]
gi|302203437|gb|ADL12115.1| protein of unknown function UPF0044 [Acetohalobium arabaticum DSM
5501]
Length = 97
Score = 42.4 bits (98), Expect = 1.2, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDY 432
LT ++ + +RK+G +L P+ ++GK G+ DL K V E E EL++I + +N S Y
Sbjct: 2 LTGKQRSYLRKQGNQLNPVVQIGKKGITPDLLKQVEEVLEAKELIKI--RALNNSLY 56
>gi|388514061|gb|AFK45092.1| unknown [Lotus japonicus]
Length = 161
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQG-MNGSDYRK 434
L ++A +M+K+ P+ +GK+ +AK ++ F+ L +N +G G+ ++
Sbjct: 40 LLRKQALQMKKR-----PVLAIGKSNTVSGIAKAIKTHFQKHSLAIVNVKGRAKGTSVQE 94
Query: 435 IGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGN 472
+ KL VL+S E ++++RG W + KPGN
Sbjct: 95 VVFKLEQATGAVLVSQEPSKVILYRG--WGAG-EKPGN 129
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
E+ +T +E L + ++ S + +GR G+ ++ N+H HWK+ K+ C
Sbjct: 155 EVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKP 214
Query: 312 VDMDNVCEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
+ E+L + +GG + G + +RG+ Y
Sbjct: 215 GQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGY 249
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E +T +E + ++ L +GR G+ +++ +H HWK R K+ +
Sbjct: 334 EMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVL 393
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
+ LE +GG ++ + G + ++RG+NY
Sbjct: 394 YTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNY 427
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L +E L + +++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 175 LNGEERFYLKKVSQKKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 234
Query: 318 CEQLEERTGGKIIYRRGG-VLYLFRGRNY 345
++ +GG I G + +RG++Y
Sbjct: 235 ASEIARLSGGVPINIVGNDTVVFYRGKDY 263
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 280 GRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRGG 335
GR G+ +L+ +H HWK R K+ + + LE +GG ++ + G
Sbjct: 698 GRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGY 757
Query: 336 VLYLFRGRNYNYRSRP 351
+ ++RG+NY SRP
Sbjct: 758 AIIIYRGKNY---SRP 770
>gi|304403897|ref|ZP_07385559.1| protein of unknown function UPF0044 [Paenibacillus curdlanolyticus
YK9]
gi|304346875|gb|EFM12707.1| protein of unknown function UPF0044 [Paenibacillus curdlanolyticus
YK9]
Length = 99
Score = 41.2 bits (95), Expect = 2.6, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
LT ++ +R L PI ++GK G + K++ EA E EL++++ G D ++I
Sbjct: 2 LTGKQKRHLRSLAHHLTPIFQVGKGGTNEHIMKHIEEAIETRELIKVSVLNNCGDDPKEI 61
Query: 436 GAKLRDLVPCVLISFEREHILMWR 459
G +L C L+ + I++++
Sbjct: 62 GQELAQGSGCELVQVIGKTIVLYK 85
>gi|356538720|ref|XP_003537849.1| PREDICTED: uncharacterized protein LOC100779359 [Glycine max]
Length = 260
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 258 LTADEVRELVESAKRSSRQLN---MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDM 314
L+ E +EL A +L +G+ G+T N+ + + KIK C ++
Sbjct: 121 LSVKERKELASYAHSLGDKLKTQLVGKSGVTPNLATSFIETLEANELLKIKIHRTCPGEL 180
Query: 315 DNVCEQLEERTGGKIIYRRGGVLYLFR 341
D+V +QLEE TG + + G L ++R
Sbjct: 181 DDVVKQLEEATGSVAVGQIGRTLIIYR 207
>gi|357413334|ref|YP_004925070.1| ABC transporter [Streptomyces flavogriseus ATCC 33331]
gi|320010703|gb|ADW05553.1| ABC transporter related protein [Streptomyces flavogriseus ATCC
33331]
Length = 1268
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 18/210 (8%)
Query: 551 SFADDNEQLSADESLSLADDDEPFSDSEN---LSSADDDEPFLASDSTTNVMEINETISA 607
S D L AD S+ DD F + S A++D P L D + ++ ET++
Sbjct: 337 SMTDGTRTLPADAPASVEFDDVRFGYAREEAPGSGAEEDRPVL--DGFSLTIDPGETVAV 394
Query: 608 TGCSNDKSDAMKNIYENVNKLENSGV---GNDTSEPVSDTNECQTVLDNKGSVLGESAAL 664
G S + + + + V G+D E D+ L + S L
Sbjct: 395 VGASGSGKSTVSLLLPRFYDVSHGAVLVGGHDVRELTQDSLRAAIGLVPEDSFLFSE--- 451
Query: 665 SVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSL----EIVL 720
SVG+ G +T++Q E + H + SE+PE ++ HG +L +
Sbjct: 452 SVGANIAYGYPGATQEQIERAARAAQAHGF---ISELPEGYDTKVGEHGLTLSGGQRQRV 508
Query: 721 HLMRQAVENGSALVLDDATLDADSIYERSV 750
L R + + L+LDDAT D+ E +
Sbjct: 509 ALARAILTDPRLLILDDATSAVDARVEHEI 538
>gi|344999816|ref|YP_004802670.1| ABC transporter-like protein [Streptomyces sp. SirexAA-E]
gi|344315442|gb|AEN10130.1| ABC transporter related protein [Streptomyces sp. SirexAA-E]
Length = 1252
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 22/207 (10%)
Query: 551 SFADDNEQLSADESLSLADDDEPFSDSENLSSADDDEPFLASDSTTNVMEINETISATGC 610
S AD ++ AD S+ DD F D++ P L D + +E ET++ G
Sbjct: 327 SMADGTKEFPADAPASVEFDDVRFG-------YDEERPVL--DGFSLTIEPGETVALVGA 377
Query: 611 SNDKSDAMKNIYENVNKLENSGV---GNDTSEPVSDTNECQTVLDNKGSVLGESAALSVG 667
S + + + + V G+D E D+ L + S L SVG
Sbjct: 378 SGSGKSTVSLLLPRFYDVTHGAVLVGGHDVRELTQDSLRAAVGLVPEDSFLFSE---SVG 434
Query: 668 SETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPSL----EIVLHLM 723
G E+TR+Q E + H + S++P+ ++ HG +L + L
Sbjct: 435 ENIAYGHPEATREQIEQAARAAQAHGF---ISQLPDGYDTKVGEHGLTLSGGQRQRVALA 491
Query: 724 RQAVENGSALVLDDATLDADSIYERSV 750
R + + L+LDDAT D+ E +
Sbjct: 492 RAILTDPRLLLLDDATSAVDARVEHEI 518
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 40.8 bits (94), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
L+ +E L + +++ S + +GR G+ ++ N+H HWK+ K+ CK +
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 232
Query: 318 CEQLEERTGGKIIYRRG-GVLYLFRGRNY 345
++ +GG + G + +RG++Y
Sbjct: 233 ANEIARLSGGIPVNVIGDDTIVFYRGKSY 261
>gi|147771494|emb|CAN73653.1| hypothetical protein VITISV_005730 [Vitis vinifera]
Length = 239
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 258 LTADEVRELVESAKRSSRQLN---MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDM 314
LT E +EL A ++L +G+ G+T ++ + + KIK G C ++
Sbjct: 114 LTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENLESNELLKIKIHGTCPGEL 173
Query: 315 DNVCEQLEERTGGKIIYRRGGVLYLFR 341
+V +QLEE TG ++ + G + L+R
Sbjct: 174 PDVVKQLEESTGSVVVGQIGRSVILYR 200
>gi|138896096|ref|YP_001126549.1| hypothetical protein GTNG_2459 [Geobacillus thermodenitrificans
NG80-2]
gi|196248989|ref|ZP_03147689.1| protein of unknown function UPF0044 [Geobacillus sp. G11MC16]
gi|134267609|gb|ABO67804.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196211865|gb|EDY06624.1| protein of unknown function UPF0044 [Geobacillus sp. G11MC16]
Length = 97
Score = 40.0 bits (92), Expect = 5.0, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT + R L A +G+ G+T M + I A + R K+ C D D V
Sbjct: 2 LTGKQKRFLRAQAHHLKPIFQVGKGGVTEAMTEQIAAALEARELLKVSVLQNCEEDRDVV 61
Query: 318 CEQLEERTGGKIIYRRGGVLYLFR 341
EQL E TG +++ G + L++
Sbjct: 62 AEQLAEGTGAELVQVIGNTIVLYK 85
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYR---- 332
L +G G+ +++N+H HWK R K+ K ++ L +GG ++
Sbjct: 21 LPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEETARLLAYESGGILVAIERVP 80
Query: 333 RGGVLYLFRGRNY 345
+G L +RG+NY
Sbjct: 81 KGYALIFYRGKNY 93
>gi|114777425|ref|ZP_01452422.1| hypothetical protein SPV1_14034 [Mariprofundus ferrooxydans PV-1]
gi|114552207|gb|EAU54709.1| hypothetical protein SPV1_14034 [Mariprofundus ferrooxydans PV-1]
Length = 92
Score = 40.0 bits (92), Expect = 5.8, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 48/91 (52%)
Query: 375 GLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRK 434
L+ +E E++ + L P+ ++G+ G+ +L +A + EL++++ G NGS+ +
Sbjct: 2 ALSSKERKELKARAHHLKPVIRIGQKGITENLVLETEQALDTHELIKVHIAGENGSECKA 61
Query: 435 IGAKLRDLVPCVLISFEREHILMWRGQEWKS 465
G +L ++ + +++R Q+ +S
Sbjct: 62 SGLELARQSHAEVVDHIGKTTILYRKQQTQS 92
>gi|299535725|ref|ZP_07049046.1| hypothetical protein BFZC1_06868 [Lysinibacillus fusiformis ZC1]
gi|424739108|ref|ZP_18167530.1| hypothetical protein C518_3645 [Lysinibacillus fusiformis ZB2]
gi|298728925|gb|EFI69479.1| hypothetical protein BFZC1_06868 [Lysinibacillus fusiformis ZC1]
gi|422946973|gb|EKU41375.1| hypothetical protein C518_3645 [Lysinibacillus fusiformis ZB2]
Length = 100
Score = 39.7 bits (91), Expect = 6.4, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRI----NCQ 425
LT ++ +R + L PI ++GK GV ++ K +REA EV EL+++ NC+
Sbjct: 2 LTGKQKRFLRAEAHHLTPIFQVGKGGVNDEMTKQIREALEVRELIKVRILDNCE 55
>gi|408356446|ref|YP_006844977.1| hypothetical protein AXY_10830 [Amphibacillus xylanus NBRC 15112]
gi|407727217|dbj|BAM47215.1| hypothetical protein AXY_10830 [Amphibacillus xylanus NBRC 15112]
Length = 96
Score = 39.7 bits (91), Expect = 6.8, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNV 317
LT + R L A +G+DG+ NML + ++R K+ C D ++V
Sbjct: 2 LTGKQKRFLRAKAHHLKPIFQVGKDGVNENMLTQVSEALEKRELIKVNVLQNCLEDKEDV 61
Query: 318 CEQLEERTGGKIIYRRGGVLYLFR 341
EQL T +++ G + L+R
Sbjct: 62 AEQLVNGTNAELVQIIGATIVLYR 85
>gi|18311108|ref|NP_563042.1| RNA-binding protein [Clostridium perfringens str. 13]
gi|110798873|ref|YP_696804.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
gi|110803303|ref|YP_699402.1| putative RNA-binding protein [Clostridium perfringens SM101]
gi|168205933|ref|ZP_02631938.1| putative RNA-binding protein [Clostridium perfringens E str.
JGS1987]
gi|168208828|ref|ZP_02634453.1| putative RNA-binding protein [Clostridium perfringens B str. ATCC
3626]
gi|168212837|ref|ZP_02638462.1| putative RNA-binding protein [Clostridium perfringens CPE str.
F4969]
gi|168215753|ref|ZP_02641378.1| putative RNA-binding protein [Clostridium perfringens NCTC 8239]
gi|169346812|ref|ZP_02865763.1| putative RNA-binding protein [Clostridium perfringens C str.
JGS1495]
gi|182624014|ref|ZP_02951802.1| putative RNA-binding protein [Clostridium perfringens D str.
JGS1721]
gi|422346791|ref|ZP_16427705.1| hypothetical protein HMPREF9476_01778 [Clostridium perfringens
WAL-14572]
gi|422875040|ref|ZP_16921525.1| putative RNA-binding protein [Clostridium perfringens F262]
gi|18145791|dbj|BAB81832.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673520|gb|ABG82507.1| putative RNA-binding protein [Clostridium perfringens ATCC 13124]
gi|110683804|gb|ABG87174.1| putative RNA-binding protein [Clostridium perfringens SM101]
gi|169297094|gb|EDS79216.1| putative RNA-binding protein [Clostridium perfringens C str.
JGS1495]
gi|170662601|gb|EDT15284.1| putative RNA-binding protein [Clostridium perfringens E str.
JGS1987]
gi|170713172|gb|EDT25354.1| putative RNA-binding protein [Clostridium perfringens B str. ATCC
3626]
gi|170715510|gb|EDT27692.1| putative RNA-binding protein [Clostridium perfringens CPE str.
F4969]
gi|177910907|gb|EDT73261.1| putative RNA-binding protein [Clostridium perfringens D str.
JGS1721]
gi|182382431|gb|EDT79910.1| putative RNA-binding protein [Clostridium perfringens NCTC 8239]
gi|373226336|gb|EHP48663.1| hypothetical protein HMPREF9476_01778 [Clostridium perfringens
WAL-14572]
gi|380304035|gb|EIA16328.1| putative RNA-binding protein [Clostridium perfringens F262]
Length = 100
Score = 39.7 bits (91), Expect = 6.9, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
+T ++ +R G KL PI ++GKNG+ + K V +A E E+++IN +G + R+
Sbjct: 2 ITTKQRAYLRGLGAKLTPIFQIGKNGIEDNFLKQVDDALEAREILKINVLENSGLETREA 61
Query: 436 GAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
+ + + C + I+++R + I P
Sbjct: 62 SNFICERLGCEGVQSIGNKIVLYRASKNNPKIELP 96
>gi|312136400|ref|YP_004003737.1| hypothetical protein Mfer_0172 [Methanothermus fervidus DSM 2088]
gi|311224119|gb|ADP76975.1| protein of unknown function UPF0044 [Methanothermus fervidus DSM
2088]
Length = 87
Score = 39.7 bits (91), Expect = 7.3, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 277 LNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGV 336
+N+G+ G+T+N+++ I K ++ KI+ + + E++ +TG ++ RG
Sbjct: 20 VNIGKRGITNNLINEIKRQLKAKKVIKIRFAKTISTRKNEYLEEIIRKTGASLVDLRGNT 79
Query: 337 LYLFRGRN 344
LF+ +N
Sbjct: 80 AVLFKNKN 87
>gi|339010604|ref|ZP_08643174.1| putative RNA-binding protein YqeI [Brevibacillus laterosporus LMG
15441]
gi|421873987|ref|ZP_16305596.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
gi|338772759|gb|EGP32292.1| putative RNA-binding protein YqeI [Brevibacillus laterosporus LMG
15441]
gi|372457098|emb|CCF15145.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
Length = 96
Score = 39.3 bits (90), Expect = 8.4, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKI 435
LT ++ +R L PI ++GK GV ++ K ++EA EV EL++++ N D +
Sbjct: 2 LTGKQKRYLRSMAHHLTPIFQVGKGGVNENMVKQIQEALEVRELIKVSILQNNMDDKHAV 61
Query: 436 GAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
L ++ +++++ + +I+ P
Sbjct: 62 AEDLATGAGAEMVQLIGHTVVLYKESKENKTIVLP 96
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,804,765,416
Number of Sequences: 23463169
Number of extensions: 620517034
Number of successful extensions: 1922181
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 1272
Number of HSP's that attempted gapping in prelim test: 1885891
Number of HSP's gapped (non-prelim): 18428
length of query: 838
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 687
effective length of database: 8,816,256,848
effective search space: 6056768454576
effective search space used: 6056768454576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 82 (36.2 bits)