BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003220
(838 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/491 (67%), Positives = 393/491 (80%), Gaps = 25/491 (5%)
Query: 1 MALKLIIPFPIFSPP--PNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEI 58
M+LKL PFPIF+P PNHNP R +EIRFSRW NANAE F QRRR+Q+E+
Sbjct: 1 MSLKLNTPFPIFAPSLFPNHNP---------RAPSEIRFSRWGNANAERFEQRRRSQEEL 51
Query: 59 EDDIRRHRRFDSATKITQSYDSSTSTATNGVA-FKSAGTPSSPSRPSIPGRKSKYSKPAT 117
E +IRR RRFD+ATKI ++DS + A + F+S GTPS PS SIPGR+SKYSKP +
Sbjct: 52 EAEIRRDRRFDAATKIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKPDS 111
Query: 118 NSSVDHPAFRKISKREKTTNKSPEKPAA--SKSNISITEDGLSYVIDGAPFEFKYSYTEA 175
+ R K + P+ P +K + ++EDGL+YVI+GAPFEFKYSYTE
Sbjct: 112 GPN-----------RPKNKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTET 160
Query: 176 PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKP 235
PK KPLKLRE A++PFGPTTMGRPWTGRAPLP S+K +EFDSF+LPP KKG+KPVQKP
Sbjct: 161 PKVKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKP 220
Query: 236 GPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAH 295
GP+ PG GPRYV ++EEILGEPLT +EVRELV S +++RQLNMGRDGLTHNML+NIH
Sbjct: 221 GPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDL 280
Query: 296 WKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPL 355
WKRRR CKIKCKGVCTVDMDNVCEQLEE+ GGK+IYRRGGVL+LFRGRNYN+R+RPRFPL
Sbjct: 281 WKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPL 340
Query: 356 MLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFE 415
MLWKPV PVYPRLIQQVP+GLT +EAT MR+KGR+L+PICKLGKNGVYCDL KNV+EAFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 416 VCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSE 475
VCELVRI+CQGM GSD+RKIGAKL+DLVPCVL+SFE E IL+WRG+EWKSS+ P +
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD 460
Query: 476 DAKESKVDGSI 486
++ +VD ++
Sbjct: 461 ILEDIEVDTAL 471
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 19/142 (13%)
Query: 715 SLEIVLHLMRQAVENGSALVLDDATLDADSIYERSVAFAKSAPPGPVFQQRSRKI-AIQK 773
S+E VL LM+QAVE+G+ALVLD A LDAD+++ ++VAF+ A PGPVFQ RK ++K
Sbjct: 561 SIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVASPGPVFQHGLRKQPTVKK 620
Query: 774 GEKKEAGHLKMKREVPNMVVSEN---RGNVRQSNRKKTKNS--------------DEIEH 816
E +E G+ ++ + N+VVS N NV +++ DE
Sbjct: 621 QESQEFGYGDLEAKSSNVVVSRNASKSSNVVVFGKREVAERGEREEKEEGSKKKMDEFAE 680
Query: 817 GLDVVLSPQGSLKIDELAKLLA 838
V+ P G+LK+DELAKLLA
Sbjct: 681 DYREVM-PHGTLKVDELAKLLA 701
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 563 bits (1452), Expect = e-159, Method: Compositional matrix adjust.
Identities = 339/727 (46%), Positives = 450/727 (61%), Gaps = 86/727 (11%)
Query: 123 HPAFRKISKREKTTNKSPE--KPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKP 180
HPAF + + PE +PAA + +TE GL+Y +DGAPFEF+YSYTE P+A+P
Sbjct: 50 HPAFSSVIRGRPKKVPIPENGEPAA---GVRVTERGLAYHLDGAPFEFQYSYTETPRARP 106
Query: 181 LKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLP 240
+ LREA F PFGP RPWTGR PLP S+K+L EFDSF LPPP KKGVKPVQ PGP+L
Sbjct: 107 VALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLA 166
Query: 241 GTGPRY-VSTREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRR 299
GT PRY ++REE+LGEPLT +EV ELV++ ++ RQLN+GRDGLTHNML+NIH+HWKR+
Sbjct: 167 GTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRK 226
Query: 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWK 359
R CKIKCKGVCTVDMDNVC+QLEE+ GGK+I+ +GGV++LFRGRNYNYR+RP +PLMLWK
Sbjct: 227 RVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWK 286
Query: 360 PVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCEL 419
P PVYPRL++++PDGLT +EA +MRK+GR+L PICKLGKNGVY +L K VREAFE C+L
Sbjct: 287 PAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDL 346
Query: 420 VRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKE 479
VR++C G+N SD RKIGAKL+DLVPC L+SFE EHILMWRG +WKSS+ P + D K
Sbjct: 347 VRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSL--PPLEENDFK- 403
Query: 480 SKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALRENLSSID 539
V + AG+GSA LT + LV N++ S K + NL I+
Sbjct: 404 --VASDQILNSKEAGSGSA--LTPIELV--------NNATSLK---------KCNL--IE 440
Query: 540 GEEPFSVTKKLSFADDNEQLSADESLSLADDDEPFSDSENL----SSADDDEPFLASDST 595
G E + K SF +N + L A + +SE + SSAD F S+S
Sbjct: 441 GAEKLEDSMKSSF--ENGMI-----LGSACGNPGVCNSEGIDGTESSADAPIEFSPSNSA 493
Query: 596 TNVMEINETISATGCSNDKSDAMKNIYENVNKLENSGVGNDTSEPVSDTNECQTVLDNKG 655
+ ++ ++T S C + D +N + ++ GN P D E T L
Sbjct: 494 RD-LDPSQT-STLYCQSSLLDKSEN--GELIEMYPDRCGNSEQSP--DVPEALTCL---- 543
Query: 656 SVLGESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVPEDHNVLTRLHGPS 715
+GS + E+ R +H GS D + S VP
Sbjct: 544 ----------MGSSDEIHELETMRRNCKHLN-GS---DGVNSDSIVPS-----------Y 578
Query: 716 LEIVLHLMRQAVENGSALVLDDATL-DADSIYERSVAFAKSAPPGPVFQQRSRKI-AIQK 773
+E +L L +QA+++G ALVL++ DA+ +Y++SVAF K+AP V + RK QK
Sbjct: 579 MEGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAFTKTAPRYLVLRHTPRKSHGTQK 638
Query: 774 GEKKEAGHLKMKREVPNMVVSEN--RGNVRQSNRKKTKNSDEIEHGLDVVLSPQGSLKID 831
E A ++++ + + VS++ + + + +N E DVV PQG+L++D
Sbjct: 639 TEP--AKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRNDHAREFLSDVV--PQGTLRVD 694
Query: 832 ELAKLLA 838
ELAKLLA
Sbjct: 695 ELAKLLA 701
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/396 (61%), Positives = 303/396 (76%), Gaps = 16/396 (4%)
Query: 85 ATNGVAFKSAGTPSSPSRPSIPGRK----SKYSKPATN------SSVDHPAFRKISK--R 132
AT + +S +P+ S P +P S + +P T ++ HPAF ++
Sbjct: 2 ATARLPSRSFLSPAQQSYPRLPASVRLCLSHHEQPPTGPKRHRRAATSHPAFSAAARGRA 61
Query: 133 EKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFG 192
+K ++PAA + +T+ G+SY +DGAPFEF+YSYTEAP+A+P+ LREA F PFG
Sbjct: 62 KKIPIADTDEPAA---GVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFG 118
Query: 193 PTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVS-TRE 251
P RPWTGR PLP S+K+L EFDSF LP P KKGVKPVQ PGP+L G PRY S +RE
Sbjct: 119 PEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSRE 178
Query: 252 EILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCT 311
+ILGEPLT +EV ELV+ + +S RQLNMGRDGLTHNML+NIH+HWKR+R CKIKCKGVCT
Sbjct: 179 DILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 312 VDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQ 371
+DMDN+C QLEE+ GGK+I+R+GGV++LFRGRNYNYR+RP FPLMLWKPV PVYPRL+ +
Sbjct: 239 IDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTK 298
Query: 372 VPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSD 431
VP GLT +EATEMR +G +L PICKLGKNGVY +L VREAFE C+LVR++C G+N SD
Sbjct: 299 VPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSD 358
Query: 432 YRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSI 467
RKIGAKL+DLVPC+L+SFE EHILMWRG +WKSS+
Sbjct: 359 CRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSL 394
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 713 GPSLEIVLHLMRQAVENGSALVL-DDATLDADSIYERSVAFAKSAPPGPVFQQRSRKIAI 771
G +E +L L+ QA+ +G ALVL +D D+D +YE+SVAF KS P VF+ RK +
Sbjct: 549 GSKVEGLLCLLEQAIHSGRALVLSEDELADSDLVYEKSVAFTKSIPRRLVFENTRRKSSA 608
Query: 772 QKGEKKEAGHLKMKREVPNMVVS--ENRGNVRQSNRKKTKNSDEIEHGLDVV--LSPQGS 827
++ K M+ S EN+ V + +T I+HG + + + QG+
Sbjct: 609 RRNVPDNHARTKTHLVENKMLSSPVENKFIVNGGSAMQT-----IDHGQEFLSDVVHQGT 663
Query: 828 LKIDELAKLLA 838
L++DELAKLLA
Sbjct: 664 LRVDELAKLLA 674
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/320 (62%), Positives = 247/320 (77%)
Query: 149 NISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPP 208
I I + G+SY + GAPFEF++SY+E PK KP+ +RE AF PF P TM RPWTG+APL
Sbjct: 94 TILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKK 153
Query: 209 SKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVE 268
SKKK+ FDSF PP K GVK V+ PGP G P+ REE+LGEPL E L++
Sbjct: 154 SKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIK 213
Query: 269 SAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGK 328
+RQ+N+GRDG THNML+ IH+HWKRRR CK++CKGV TVDM+NVC LEE+TGG+
Sbjct: 214 PHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGE 273
Query: 329 IIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKG 388
II+R GGV+YLFRGRNYNYR+RP++PLMLWKP PVYP+LIQ+VP+GLT EEA E R KG
Sbjct: 274 IIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKG 333
Query: 389 RKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLI 448
+ L PICKL KNGVY L K+VR+AFE+ LV+++C G+ SDY+KIGAKL++LVPCVL+
Sbjct: 334 KSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLL 393
Query: 449 SFEREHILMWRGQEWKSSIL 468
SF+ E ILMWRG+EWKS +
Sbjct: 394 SFDDEQILMWRGREWKSRFV 413
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/341 (54%), Positives = 246/341 (72%), Gaps = 18/341 (5%)
Query: 144 AASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGR 203
AAS + + GLS+ + GAPF+F++SY+EAP+A PL +RE AF PF P TM RPWTG+
Sbjct: 110 AASGRAVVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGK 169
Query: 204 APLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYL--------------PGTGPRYVST 249
APL ++K + P ++ + V G + PG G +
Sbjct: 170 APLLTKEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDG----RS 225
Query: 250 REEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGV 309
REE+LGEPLT EVR LV+ +RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV
Sbjct: 226 REEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGV 285
Query: 310 CTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLI 369
TVDM N+C LEE++GGK+I+R GGV++L+RGR+Y+ ++RPR+PLMLWKP TPVYP+LI
Sbjct: 286 PTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLI 345
Query: 370 QQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNG 429
++ PDG T EEA EMR+KGR L+PICKL KNG+Y L K+VR+AFE +LV+I+C+G+N
Sbjct: 346 KEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNP 405
Query: 430 SDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKP 470
SDY+KIGAKLRDLVPCVL+SF+ E ILM RG+EWKS KP
Sbjct: 406 SDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKP 446
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/381 (50%), Positives = 261/381 (68%), Gaps = 29/381 (7%)
Query: 117 TNSSVDHPAFRKISKREKTTNKSPEKPAASKSN-----------------ISITEDGLSY 159
T + +PAFR + +T + P P A+ + + GLS+
Sbjct: 64 TTGNGGNPAFR--APHLRTAYRKPVPPVAAAGEGEALLAADASDAADGRAVVVGPSGLSF 121
Query: 160 VIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSF 219
+ GAPF+F++SY+E P+A P+ +RE AF PF P TM RPWTG+APL ++K +
Sbjct: 122 RLPGAPFDFRFSYSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVR 181
Query: 220 QLPPPNKKGVKPVQKPGPYLPGTGPRYVS----------TREEILGEPLTADEVRELVES 269
P ++ + V G + G R + +REE+LGEPLTA EVR+LV+
Sbjct: 182 LHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKP 241
Query: 270 AKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKI 329
+RQLN+GRDGLTHNML+ IH HW+R+ CK++C+GV TVDM N+C LEE++GGK+
Sbjct: 242 HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV 301
Query: 330 IYRRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGR 389
I+R GGV++L+RGRNYN R+RPR+PLMLWKP TPVYP+LIQ+ P+GLT EEA EMR++G+
Sbjct: 302 IHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGK 361
Query: 390 KLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLIS 449
L+PICKL KNG+Y L ++VR+AFE +LV+I+C+G+N SDY+KIGAKLRDLVPCVL+S
Sbjct: 362 DLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 421
Query: 450 FEREHILMWRGQEWKSSILKP 470
F+ E ILM+RG+EWKS KP
Sbjct: 422 FDNEQILMFRGKEWKSRYPKP 442
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/306 (49%), Positives = 204/306 (66%), Gaps = 17/306 (5%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPP 223
PF+F++SYTE+ P KP+ LRE +SPFGP + RPWTG P L++ + P
Sbjct: 77 PFDFRFSYTESSPGDKPIGLREPKYSPFGPGRLDRPWTGLCA-PAVDTTLRDAHADDPAP 135
Query: 224 PNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK--RSSRQLNMGR 281
++ ++ ++ RE +LGEPLT E LV + R+ +Q+N+GR
Sbjct: 136 AAERELEEARR-------------RERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGR 182
Query: 282 DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFR 341
DGLTHNML++IH HWK A ++KC GV TVDM NVC QLE++TGG II+R GG L L+R
Sbjct: 183 DGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYR 242
Query: 342 GRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNG 401
GR+YN + RP PLMLWKP PVYPRLI+ +GLT+EE EMRKKG + + KL KNG
Sbjct: 243 GRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNG 302
Query: 402 VYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQ 461
Y L VR+AF ELVRI+ +G+ SDYRKIG KLRDLVPC+++SF++E I++WRG+
Sbjct: 303 YYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGK 362
Query: 462 EWKSSI 467
++ +I
Sbjct: 363 DYNGTI 368
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 30/342 (8%)
Query: 155 DGLSYVIDGAPFEFKYSYTEA-PKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKL 213
+G+ V PF+F++SYTE+ +P+ LRE +SPFGP + R WTG P K+
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNPKV 132
Query: 214 KEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKR- 272
+ D + P +K K RE+I G LT E + LVE +R
Sbjct: 133 ESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQRN 174
Query: 273 -SSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIY 331
+ RQ+N+GRDGLTHNML++++ HWK A ++KC GV T+DM NV LE++T G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 332 RRGGVLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKL 391
+ G L L+RGRNY+ + RP+ PLMLWKP PVYPRLI+ DGL+++E MRKKG +
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 392 IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFE 451
+ KL KNG Y L VR+AF V ELVRI+C G+ DY+KIGAKLRDLVPC+L++F+
Sbjct: 295 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFD 354
Query: 452 REHILMWRGQEWKSSILKPGNDSEDA----KESKVDGSISVA 489
+E +++WRG+++K P D E + +ES +D + ++
Sbjct: 355 KEQVVIWRGKDYKP----PKEDDEYSSFIHRESSIDSDVDLS 392
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/301 (46%), Positives = 191/301 (63%), Gaps = 34/301 (11%)
Query: 165 PFEFKYSYTEA-PKAKPLKLREAA-FSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLP 222
PF+F+YSY+E P +P+ RE FSPFGP + RPW G A +
Sbjct: 80 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGA------- 132
Query: 223 PPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SRQLNMG 280
++REE+LGEPL +EV +LVE + S SRQ+N+G
Sbjct: 133 -----------------------AATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLG 169
Query: 281 RDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLF 340
+ G+THNM+D+IH HWKR A +IKC GV T+DMDN+C LE++TGGK+IYR +L L+
Sbjct: 170 KGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILY 229
Query: 341 RGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKN 400
RGRNY+ + RP+ PLMLWKP+ P+YPRL+Q V DGLT E+ E+R G P+ KL +N
Sbjct: 230 RGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRN 289
Query: 401 GVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRG 460
GVY ++ VREAF+ E+VR++C + SD +KIG KLRDLVPCV + F+ E I++WRG
Sbjct: 290 GVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRG 349
Query: 461 Q 461
+
Sbjct: 350 K 350
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 278 bits (712), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 191/306 (62%), Gaps = 34/306 (11%)
Query: 160 VIDGAPFEFKYSYTEA-PKAKPLKLRE-AAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFD 217
VI PF+F+YSY+E P+ +P+ RE FSPFGP + R WTG L E D
Sbjct: 73 VISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALASP-----EID 127
Query: 218 SFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAKRS--SR 275
Q +V R +LGE LT DEV EL+E + S +R
Sbjct: 128 QSQ-------------------------WVEERARVLGETLTEDEVTELIERYRHSDCTR 162
Query: 276 QLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGG 335
Q+N+G+ G+THNM+D+IH HWK+ A +IKC GV T+DMDN+C LEE++GGKI+YR
Sbjct: 163 QINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNIN 222
Query: 336 VLYLFRGRNYNYRSRPRFPLMLWKPVTPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPIC 395
+L L+RGRNY+ +SRP PLMLWKP P+YPRL++ V DGL EE EMR +G +
Sbjct: 223 ILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALM 282
Query: 396 KLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHI 455
KL +NGVY ++ VRE FE E+VR++C + SD ++IG KL+++VPCV I F+ E I
Sbjct: 283 KLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQI 342
Query: 456 LMWRGQ 461
++WRG+
Sbjct: 343 ILWRGK 348
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVD---- 313
L A E+ L +A+ R + G+T +++ + W A + GV V+
Sbjct: 155 LEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQW----AKGQELAGVRIVEPLRR 210
Query: 314 -MDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
MD E LE +TGG +++ RGG+ +++RG +Y
Sbjct: 211 CMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E R + + + +GR G+ +++ IH HWK + K+ K +
Sbjct: 564 ELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQIT 623
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNY 345
LE TGG +I + + L+RG+NY
Sbjct: 624 YTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 351 PRFPLMLWKPVTPVYPRLI-QQVPD--------------GLTLEEATEMRKKGRKLIPIC 395
PRF W PV L+ + VPD L EE T +RK R L
Sbjct: 314 PRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHF 373
Query: 396 KLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISFEREH 454
LG+N LA + + +E + ++ + G+ +++ ++ L+ L +I +++
Sbjct: 374 VLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDY 433
Query: 455 ILMWRGQEWKSSILKPGNDSEDA--KESKV 482
I+++RG++ PG +E +ES+V
Sbjct: 434 IIIYRGKD-----FLPGGVAESVIERESQV 458
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 258 LTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVDMDN 316
L +E+ L + A+ +GR+ + I W++ K+ K G+ + +
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 317 VCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
+ L+ TGG +I R + ++RG+++
Sbjct: 414 MARNLKRLTGGTVILRNKDYIIIYRGKDF 442
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII-YRRGGVL 337
+GR G+ ++ N+H HWK+ + ++ K ++ + +L TGG ++ G +
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTI 257
Query: 338 YLFRGRNY 345
++RG+NY
Sbjct: 258 IMYRGKNY 265
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 279 MGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKII----YRRG 334
+GR G+ +++ IH HWK + K+ K T + LE TGG +I
Sbjct: 585 LGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTS 644
Query: 335 GVLYLFRGRNYNYRSRPRFPLMLWK 359
+ L+RG+NY ++ F +L K
Sbjct: 645 HAIILYRGKNYRRPAKSSFSNLLTK 669
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 116/327 (35%), Gaps = 85/327 (25%)
Query: 218 SFQLPPPNKKGVKPVQK------PGPYLPGTGPRYVSTREEILGEPLTADEVRELVESAK 271
+ +L PP + G V+K P G + RE+ EP A+ E E +
Sbjct: 118 TIELSPPREPGQYVVEKEKSRAVPWAAARDEGLKVALRREKKPREPTRAETELETHELRR 177
Query: 272 RSSRQLNMGR------DGLTHNMLDNIHAHWKRRRACKIKCKGVCTVD-----MDNVCEQ 320
+GR G+T ++ + W A + V V+ MD E
Sbjct: 178 LRRLARGIGRWARAKKAGVTDEVVKEVRREW----ASGEELAAVRIVEPLRRSMDRAREI 233
Query: 321 LEERTGGKIIYRRGGVLYLFRGRNYNYRSR------------------------------ 350
LE +TGG +++ +G + +++RG Y ++
Sbjct: 234 LEIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHKDDAFQENDQSICGQKDEEP 293
Query: 351 ------------------PRFPLMLWKPVTPVYPRLIQQVPDG---------------LT 377
PRF W PV L+ + G L
Sbjct: 294 VKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLA 353
Query: 378 LEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIG 436
EE T +RK R L LG+N LA + + +E + +I + G+ ++ ++
Sbjct: 354 DEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMA 413
Query: 437 AKLRDLVPCVLISFEREHILMWRGQEW 463
L+ L +I ++ I+++RG+++
Sbjct: 414 WNLKHLTGGTVILRNKDFIILYRGKDF 440
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 200 WTGRAPLPPSKKKLKEF-----DSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVSTREEIL 254
W PLP L EF ++L PP GV+P
Sbjct: 317 WWWDTPLPVDADLLPEFVPGSKTPYRLCPP---GVRPT---------------------- 351
Query: 255 GEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK-GVCTVD 313
L +E+ L + A+ +GR+ + I W++ KI K G+ +
Sbjct: 352 ---LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTN 408
Query: 314 MDNVCEQLEERTGGKIIYRRGGVLYLFRGRNY 345
+ + L+ TGG +I R + L+RG+++
Sbjct: 409 NEQMAWNLKHLTGGTVILRNKDFIILYRGKDF 440
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 41/255 (16%)
Query: 248 STREEILGEPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCK 307
+T E IL E L RE A + + +N+ + G+T +++ I + WK ++
Sbjct: 201 TTAELILDEGLLNRLRRE----ASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFD 256
Query: 308 GVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGR-NYNYRSR---------------- 350
+M+ E +E +TGG ++ + L ++RG +Y+ +
Sbjct: 257 VPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSSEGQDEISSSLYEREADRLL 316
Query: 351 ----PRFPLMLWKPVTPVYPRLIQQVPDG---------------LTLEEATEMRKKGRKL 391
PR+ + PV L+ +V +G LT EE T +R + L
Sbjct: 317 DGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPL 376
Query: 392 IPICKLGKNGVYCDLAKNVREAFEVCELVRINCQ-GMNGSDYRKIGAKLRDLVPCVLISF 450
LG+N LA + + +E C + +I + G ++ ++ +LR L VLI
Sbjct: 377 PFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILR 436
Query: 451 EREHILMWRGQEWKS 465
+ I+++RG+++ S
Sbjct: 437 NKYLIVLYRGKDFLS 451
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 256 EPLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMD 315
E LT +E L + + L +GR G+ +++ +H HWK R K+ +
Sbjct: 570 EILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVV 629
Query: 316 NVCEQLEERTGGKII----YRRGGVLYLFRGRNYNYRSRPRFPLM 356
+ LE + G +I + G + ++RG+NY RP LM
Sbjct: 630 YTAKALETESNGVLISIEKLKEGHAILIYRGKNYK---RPSSKLM 671
>sp|Q8RZX9|Y1934_ORYSJ AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza
sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1
Length = 393
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 53 RAQQEIEDDIRRHRRFDSATKITQSYDSSTSTATNGVAFKSAGTPSSPSRPSIP--GRKS 110
R++ E+ D +R+H FD + +++ +ST +A A S G SSP P P R
Sbjct: 155 RSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAPAAARDH 214
Query: 111 KYSKPATNSSVDHPAFRKISKREKTTNKSPEKPAA---SKSNISITEDGLSYVIDGAPFE 167
+ K T S V I K+ + + P+A SK + ED V +
Sbjct: 215 LFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKV-----WR 269
Query: 168 FKYSY 172
F+YSY
Sbjct: 270 FRYSY 274
>sp|Q6LHN5|GCSP_PHOPR Glycine dehydrogenase [decarboxylating] OS=Photobacterium profundum
GN=gcvP PE=3 SV=1
Length = 959
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 475 EDAKESKVDGSISVAPPTAGNGSAPSLTQMLLVEGGSLNTFNSSISPKGYEEVQSALREN 534
E+ S G I + T +A + + E GSL+ F + KGY+E+ S L E
Sbjct: 495 ENKDYSLTHGMIPLGSCTMKLNAAAEMIPITWPEFGSLHPFAPADQTKGYQELASKLSEM 554
Query: 535 LSSIDGEEPFSV 546
L S+ G + FS+
Sbjct: 555 LCSVTGYDAFSL 566
>sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168)
GN=yqeI PE=4 SV=1
Length = 96
Score = 35.0 bits (79), Expect = 2.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRI----NCQ 425
LT ++ +R K L PI ++GK GV ++ K + EA E EL+++ NC+
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQVGKGGVNDNMIKQIAEALEARELIKVSVLQNCE 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,135,438
Number of Sequences: 539616
Number of extensions: 14849188
Number of successful extensions: 48855
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 310
Number of HSP's that attempted gapping in prelim test: 46566
Number of HSP's gapped (non-prelim): 1777
length of query: 838
length of database: 191,569,459
effective HSP length: 126
effective length of query: 712
effective length of database: 123,577,843
effective search space: 87987424216
effective search space used: 87987424216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)