Query 003220
Match_columns 838
No_of_seqs 262 out of 761
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 17:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 100.0 9.6E-28 3.3E-32 214.9 14.2 88 257-344 2-89 (98)
2 1rq8_A Conserved hypothetical 99.9 9.6E-28 3.3E-32 217.3 14.1 88 257-344 1-88 (104)
3 1rq8_A Conserved hypothetical 99.9 9.3E-26 3.2E-30 204.4 11.5 95 376-470 2-96 (104)
4 1jo0_A Hypothetical protein HI 99.9 9.1E-26 3.1E-30 202.1 11.0 89 375-463 2-90 (98)
5 3ka5_A Ribosome-associated pro 56.0 26 0.00089 29.9 6.3 49 300-348 1-52 (65)
6 3k2t_A LMO2511 protein; lister 39.9 25 0.00086 29.1 3.7 49 300-348 1-52 (57)
7 3lyv_A Ribosome-associated fac 35.1 31 0.001 29.5 3.5 49 300-348 2-53 (66)
8 1hcw_A BBA1; growth response p 25.5 26 0.0009 25.1 1.3 16 822-837 3-19 (26)
9 3ka5_A Ribosome-associated pro 23.5 2.5E+02 0.0086 23.9 7.1 53 418-470 1-56 (65)
10 3sbx_A Putative uncharacterize 23.2 1.1E+02 0.0038 30.1 5.7 63 371-439 114-187 (189)
11 3jsy_A Acidic ribosomal protei 20.5 43 0.0015 33.4 2.2 67 374-441 28-101 (213)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.95 E-value=9.6e-28 Score=214.90 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHhhhcCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCEEEEEECCE
Q 003220 257 PLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGV 336 (838)
Q Consensus 257 ~LTsKQRR~LRklAhkLKPvV~IGKnGLTenVVeEIheAWkkHELVKVK~lg~~~eDmkeIaEeLEekTGGeVVQrIG~v 336 (838)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||||++++.+|+++++++|+++|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCC
Q 003220 337 LYLFRGRN 344 (838)
Q Consensus 337 IVLYRGsN 344 (838)
+||||++.
T Consensus 82 ~vLyR~~~ 89 (98)
T 1jo0_A 82 LVLYRPSE 89 (98)
T ss_dssp EEEECCCS
T ss_pred EEEEccCC
Confidence 99999884
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.95 E-value=9.6e-28 Score=217.31 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHhhhcCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCEEEEEECCE
Q 003220 257 PLTADEVRELVESAKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGV 336 (838)
Q Consensus 257 ~LTsKQRR~LRklAhkLKPvV~IGKnGLTenVVeEIheAWkkHELVKVK~lg~~~eDmkeIaEeLEekTGGeVVQrIG~v 336 (838)
|||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||||++++.+++++++++|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCC
Q 003220 337 LYLFRGRN 344 (838)
Q Consensus 337 IVLYRGsN 344 (838)
+||||++.
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999986
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=9.3e-26 Score=204.36 Aligned_cols=95 Identities=21% Similarity=0.361 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHcccCCCCcEecccCCcchHHHHHHHHHHhhCceEEEEecCCCCccHHHHHHHHHhhCCCEEEEEeCCEE
Q 003220 376 LTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHI 455 (838)
Q Consensus 376 LTgKErtyLRslA~~L~PIfqLGKNGVt~gLV~qIreAwEkrELVKI~cLgn~~tD~keIAeELaeLTG~eLVQ~IGe~I 455 (838)
||+||++|||++|++|+|+|+|||+|++++++++|.+||++||||||.|+++|..|.+++|++|++.|||++||+||+++
T Consensus 2 Lt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~ 81 (104)
T 1rq8_A 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMI 81 (104)
T ss_dssp CCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcCCccCC
Q 003220 456 LMWRGQEWKSSILKP 470 (838)
Q Consensus 456 VLYRGkdfkp~y~~~ 470 (838)
||||++..++.|.-|
T Consensus 82 VLYR~~~~~~~i~~~ 96 (104)
T 1rq8_A 82 VIYRESKENKEIELP 96 (104)
T ss_dssp EEEECCCSCCSCCCC
T ss_pred EEEeCCCCCCceecc
Confidence 999999877777654
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.93 E-value=9.1e-26 Score=202.14 Aligned_cols=89 Identities=16% Similarity=0.252 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHcccCCCCcEecccCCcchHHHHHHHHHHhhCceEEEEecCCCCccHHHHHHHHHhhCCCEEEEEeCCE
Q 003220 375 GLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREH 454 (838)
Q Consensus 375 GLTgKErtyLRslA~~L~PIfqLGKNGVt~gLV~qIreAwEkrELVKI~cLgn~~tD~keIAeELaeLTG~eLVQ~IGe~ 454 (838)
.||+||++|||++||+|+|+|+|||+|++++|+.+|++||++||||||.|+++|..|.+++|++|++.|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 003220 455 ILMWRGQEW 463 (838)
Q Consensus 455 IVLYRGkdf 463 (838)
+||||++..
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999854
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=55.99 E-value=26 Score=29.89 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=41.8
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCEEEEEE---CCEEEEEccCCCCCC
Q 003220 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRR---GGVLYLFRGRNYNYR 348 (838)
Q Consensus 300 ELVKVK~lg~~~eDmkeIaEeLEekTGGeVVQrI---G~vIVLYRGsNY~~~ 348 (838)
++|+.|-....+.+.++++.+|+-.-.--+|-+. |.+-|+||.++.++.
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEE
Confidence 5789998888899999999999988777777766 788999999887754
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=39.94 E-value=25 Score=29.09 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=36.7
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCEEEEEE---CCEEEEEccCCCCCC
Q 003220 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRR---GGVLYLFRGRNYNYR 348 (838)
Q Consensus 300 ELVKVK~lg~~~eDmkeIaEeLEekTGGeVVQrI---G~vIVLYRGsNY~~~ 348 (838)
++|+.|-....+.+.++++.+|+..-.--+|-+. |.+-|+||.++.++.
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yG 52 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYG 52 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 4566776677788899999999988777777755 789999999887653
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=35.07 E-value=31 Score=29.49 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=39.9
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCEEEEEE---CCEEEEEccCCCCCC
Q 003220 300 RACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRR---GGVLYLFRGRNYNYR 348 (838)
Q Consensus 300 ELVKVK~lg~~~eDmkeIaEeLEekTGGeVVQrI---G~vIVLYRGsNY~~~ 348 (838)
++|+.|-....+.+.++++.+|+-.-.--+|-+. |.+-|+||.++.++.
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEE
Confidence 4677777777888999999999987666777766 789999999987754
No 8
>1hcw_A BBA1; growth response protein, de novo protein design, supersecondary motif; HET: PYA; NMR {} SCOP: k.14.1.1 PDB: 1t8j_A*
Probab=25.53 E-value=26 Score=25.10 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=12.1
Q ss_pred cccCCcc-cHHHHHhhh
Q 003220 822 LSPQGSL-KIDELAKLL 837 (838)
Q Consensus 822 ~~p~gtl-~vdelakll 837 (838)
.||..|. +-|||||||
T Consensus 3 tvps~tfsrsdelakll 19 (26)
T 1hcw_A 3 TVPSXTFSRSDELAKLL 19 (26)
T ss_dssp CSSSCCCSSSHHHHHHH
T ss_pred ccCcccccccHHHHHHH
Confidence 4676665 469999997
No 9
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=23.54 E-value=2.5e+02 Score=23.89 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=39.2
Q ss_pred ceEEEEecCCCCccHHHHHHHHHhhCCCEEEEEe---CCEEEEEecCCCcCCccCC
Q 003220 418 ELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFE---REHILMWRGQEWKSSILKP 470 (838)
Q Consensus 418 ELVKI~cLgn~~tD~keIAeELaeLTG~eLVQ~I---Ge~IVLYRGkdfkp~y~~~ 470 (838)
++||..--...+-+.++...+|.-+-.--+|-++ |+.-|+||.++..=....|
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p 56 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLIEP 56 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEEEEEC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe
Confidence 4778888888999999999999876555555555 5667999999876544333
No 10
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=23.20 E-value=1.1e+02 Score=30.11 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=43.3
Q ss_pred cCCCC-CCHHHHHH---HHHcccCCCCcEecccCCcchHHHHHHHHHHhhC-------ceEEEEecCCCCccHHHHHHHH
Q 003220 371 QVPDG-LTLEEATE---MRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVC-------ELVRINCQGMNGSDYRKIGAKL 439 (838)
Q Consensus 371 ~lPEG-LTgKErty---LRslA~~L~PIfqLGKNGVt~gLV~qIreAwEkr-------ELVKI~cLgn~~tD~keIAeEL 439 (838)
.+|-| =|-+|..+ |.+++.+-+|++-++.+|.|+.|+..++.+.+.. .++.| .+|++++.+.|
T Consensus 114 alPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~------~d~~ee~~~~l 187 (189)
T 3sbx_A 114 TLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIV------VDNLDDALQAC 187 (189)
T ss_dssp ECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEE------ESSHHHHHHHH
T ss_pred EeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEE------eCCHHHHHHHh
Confidence 44555 25556555 5677777899999999999999999987555442 34443 35666766655
No 11
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=20.54 E-value=43 Score=33.36 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHcccCCCCcEecccCCcchHHHHHHHH-----HHhhC-ceEEEEe-cCCCCccHHHHHHHHHh
Q 003220 374 DGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVRE-----AFEVC-ELVRINC-QGMNGSDYRKIGAKLRD 441 (838)
Q Consensus 374 EGLTgKErtyLRslA~~L~PIfqLGKNGVt~gLV~qIre-----AwEkr-ELVKI~c-Lgn~~tD~keIAeELae 441 (838)
.|||.+|.+.||+..+.- ..|.+|||.+..--+....+ .|++= +.++-.+ +--+..|+.+++..|.+
T Consensus 28 ~gl~~~ql~~lR~~lr~~-~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k~l~~ 101 (213)
T 3jsy_A 28 MDVPAPQLQEIRDKIRDK-VKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEE 101 (213)
T ss_dssp CSCCHHHHHHHHHHHTTT-EEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC-CEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHHHHHH
Done!