Query 003221
Match_columns 838
No_of_seqs 379 out of 2396
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 19:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2109 WD40 repeat protein [G 100.0 1.2E-60 2.5E-65 534.8 19.8 639 12-777 1-659 (788)
2 PF12490 BCAS3: Breast carcino 100.0 5.1E-53 1.1E-57 447.1 16.1 239 505-750 1-251 (251)
3 KOG2110 Uncharacterized conser 100.0 5E-48 1.1E-52 411.7 33.4 325 53-596 2-341 (391)
4 KOG2111 Uncharacterized conser 100.0 2.9E-39 6.2E-44 339.6 32.9 315 58-594 7-331 (346)
5 KOG0271 Notchless-like WD40 re 99.9 5.9E-23 1.3E-27 220.3 23.5 315 51-478 110-456 (480)
6 KOG0315 G-protein beta subunit 99.9 2.8E-22 6E-27 205.9 25.0 270 76-473 12-300 (311)
7 KOG0263 Transcription initiati 99.9 1.4E-21 2.9E-26 225.3 24.1 228 75-464 390-652 (707)
8 KOG0272 U4/U6 small nuclear ri 99.9 2.2E-21 4.7E-26 210.8 19.7 258 53-478 172-435 (459)
9 KOG0271 Notchless-like WD40 re 99.9 1.3E-20 2.9E-25 202.4 20.0 291 71-459 165-479 (480)
10 cd00200 WD40 WD40 domain, foun 99.8 6.6E-18 1.4E-22 171.5 34.1 275 53-459 6-289 (289)
11 KOG0291 WD40-repeat-containing 99.8 6.6E-19 1.4E-23 201.6 29.5 288 55-470 247-559 (893)
12 KOG0272 U4/U6 small nuclear ri 99.8 3.8E-20 8.2E-25 201.2 17.2 240 52-459 213-458 (459)
13 KOG0279 G protein beta subunit 99.8 1.6E-18 3.5E-23 180.8 27.3 251 52-469 11-270 (315)
14 KOG0273 Beta-transducin family 99.8 7.4E-18 1.6E-22 185.4 26.8 270 74-461 246-523 (524)
15 KOG0286 G-protein beta subunit 99.8 3E-17 6.5E-22 172.2 27.9 265 52-483 51-325 (343)
16 KOG0318 WD40 repeat stress pro 99.8 1.6E-16 3.5E-21 176.7 31.2 329 53-472 187-572 (603)
17 KOG0265 U5 snRNP-specific prot 99.8 2.4E-17 5.2E-22 173.5 22.4 268 52-483 43-318 (338)
18 PLN00181 protein SPA1-RELATED; 99.8 1.5E-16 3.3E-21 194.5 32.7 226 76-460 546-792 (793)
19 KOG0295 WD40 repeat-containing 99.8 4.3E-17 9.3E-22 175.0 22.3 253 53-459 147-404 (406)
20 KOG0279 G protein beta subunit 99.8 2E-16 4.3E-21 165.3 26.2 226 74-462 74-314 (315)
21 KOG0266 WD40 repeat-containing 99.8 2.9E-16 6.2E-21 180.8 29.8 238 74-472 170-420 (456)
22 KOG0319 WD40-repeat-containing 99.8 3.7E-17 8E-22 187.4 20.9 371 51-476 142-550 (775)
23 KOG0295 WD40 repeat-containing 99.8 3.9E-17 8.4E-22 175.3 19.4 250 54-473 106-376 (406)
24 KOG0273 Beta-transducin family 99.7 1.1E-16 2.4E-21 176.2 22.6 214 173-469 257-490 (524)
25 PLN00181 protein SPA1-RELATED; 99.7 2.3E-15 5.1E-20 184.1 35.0 246 54-462 481-739 (793)
26 KOG0315 G-protein beta subunit 99.7 3.5E-16 7.6E-21 161.3 22.4 227 172-473 19-258 (311)
27 KOG0281 Beta-TrCP (transducin 99.7 1.5E-17 3.3E-22 177.0 12.4 230 55-464 196-431 (499)
28 KOG0286 G-protein beta subunit 99.7 9.4E-16 2E-20 161.1 25.3 223 74-459 108-343 (343)
29 KOG0266 WD40 repeat-containing 99.7 8.2E-16 1.8E-20 177.1 25.9 187 172-473 180-376 (456)
30 KOG0278 Serine/threonine kinas 99.7 1.1E-16 2.4E-21 164.9 15.7 199 53-401 97-298 (334)
31 KOG0319 WD40-repeat-containing 99.7 1.4E-15 3E-20 174.7 23.5 112 344-475 480-591 (775)
32 KOG0274 Cdc4 and related F-box 99.7 2.5E-15 5.5E-20 175.2 25.9 240 51-466 244-487 (537)
33 KOG0306 WD40-repeat-containing 99.7 8E-16 1.7E-20 176.6 20.9 225 75-462 424-665 (888)
34 KOG0291 WD40-repeat-containing 99.7 1.2E-14 2.5E-19 167.2 29.7 223 193-476 266-523 (893)
35 KOG0318 WD40 repeat stress pro 99.7 1.6E-14 3.5E-19 160.9 28.5 185 75-402 161-352 (603)
36 KOG0284 Polyadenylation factor 99.7 3.3E-16 7.1E-21 170.1 13.7 245 75-465 108-384 (464)
37 cd00200 WD40 WD40 domain, foun 99.7 2.8E-14 6E-19 144.9 27.1 211 100-472 4-218 (289)
38 PTZ00421 coronin; Provisional 99.7 4.9E-14 1.1E-18 163.6 32.2 221 85-463 52-292 (493)
39 KOG0285 Pleiotropic regulator 99.7 4E-15 8.7E-20 159.5 21.1 224 75-463 163-391 (460)
40 KOG0285 Pleiotropic regulator 99.7 2.1E-15 4.6E-20 161.6 18.9 217 95-474 141-361 (460)
41 KOG1407 WD40 repeat protein [F 99.7 7.4E-15 1.6E-19 152.5 22.1 244 52-464 16-264 (313)
42 KOG0274 Cdc4 and related F-box 99.7 5.4E-15 1.2E-19 172.5 23.7 228 77-471 220-451 (537)
43 KOG0288 WD40 repeat protein Ti 99.7 1.4E-15 3E-20 165.5 17.1 224 74-459 231-459 (459)
44 KOG0647 mRNA export protein (c 99.7 8.4E-15 1.8E-19 154.6 21.8 254 30-450 45-312 (347)
45 KOG0263 Transcription initiati 99.7 4.9E-15 1.1E-19 171.6 21.4 111 344-474 510-620 (707)
46 KOG0282 mRNA splicing factor [ 99.7 1.1E-15 2.4E-20 168.9 15.4 269 51-483 209-484 (503)
47 KOG0310 Conserved WD40 repeat- 99.7 1.6E-14 3.4E-19 160.2 24.0 237 52-460 64-308 (487)
48 KOG0306 WD40-repeat-containing 99.6 5.2E-14 1.1E-18 161.9 28.6 124 344-478 429-555 (888)
49 KOG1446 Histone H3 (Lys4) meth 99.6 1.4E-13 3E-18 146.4 29.6 251 54-471 12-272 (311)
50 KOG0643 Translation initiation 99.6 6E-14 1.3E-18 146.2 26.1 258 54-462 8-318 (327)
51 KOG0276 Vesicle coat complex C 99.6 1.3E-14 2.8E-19 164.1 22.4 221 75-457 67-295 (794)
52 KOG0276 Vesicle coat complex C 99.6 4.8E-15 1E-19 167.4 18.5 219 173-469 35-265 (794)
53 KOG0281 Beta-TrCP (transducin 99.6 1.3E-15 2.8E-20 162.6 13.0 240 52-462 233-478 (499)
54 KOG0310 Conserved WD40 repeat- 99.6 9.4E-15 2E-19 161.9 20.2 245 52-465 22-272 (487)
55 KOG0316 Conserved WD40 repeat- 99.6 1.6E-14 3.5E-19 148.2 20.3 246 53-470 14-266 (307)
56 KOG0292 Vesicle coat complex C 99.6 2E-14 4.3E-19 167.2 23.3 287 75-462 21-322 (1202)
57 PTZ00420 coronin; Provisional 99.6 2.2E-13 4.7E-18 159.8 31.9 218 86-462 56-294 (568)
58 KOG0268 Sof1-like rRNA process 99.6 4.2E-15 9.1E-20 159.7 15.5 274 52-463 62-347 (433)
59 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 6.2E-13 1.3E-17 140.1 31.9 268 76-469 2-287 (300)
60 PTZ00421 coronin; Provisional 99.6 3.1E-13 6.7E-18 157.0 31.8 249 53-463 72-333 (493)
61 KOG1036 Mitotic spindle checkp 99.6 2.5E-14 5.4E-19 151.5 20.3 238 55-451 53-294 (323)
62 KOG0316 Conserved WD40 repeat- 99.6 6.1E-14 1.3E-18 144.0 22.3 209 98-472 10-224 (307)
63 PTZ00420 coronin; Provisional 99.6 7.9E-13 1.7E-17 155.2 32.6 251 52-462 70-335 (568)
64 KOG0313 Microtubule binding pr 99.6 2.3E-13 4.9E-18 147.3 24.6 249 74-462 115-419 (423)
65 KOG0292 Vesicle coat complex C 99.6 3.3E-14 7.1E-19 165.4 18.7 212 173-483 31-260 (1202)
66 KOG0305 Anaphase promoting com 99.6 1.6E-13 3.5E-18 156.3 23.8 240 56-463 217-463 (484)
67 KOG0265 U5 snRNP-specific prot 99.6 2.4E-13 5.1E-18 143.7 22.5 243 55-459 68-336 (338)
68 KOG0645 WD40 repeat protein [G 99.6 1.3E-12 2.7E-17 136.7 27.2 260 52-461 10-311 (312)
69 KOG1539 WD repeat protein [Gen 99.6 1.5E-12 3.2E-17 151.7 29.5 119 345-465 466-610 (910)
70 KOG0973 Histone transcription 99.6 6.4E-13 1.4E-17 158.6 26.1 211 185-463 121-357 (942)
71 KOG2055 WD40 repeat protein [G 99.5 4.2E-13 9E-18 148.1 21.5 274 56-463 213-514 (514)
72 KOG0296 Angio-associated migra 99.5 8.8E-12 1.9E-16 134.6 30.2 299 75-461 76-398 (399)
73 KOG0645 WD40 repeat protein [G 99.5 4E-12 8.7E-17 133.0 26.0 204 98-461 7-225 (312)
74 KOG0293 WD40 repeat-containing 99.5 5.5E-13 1.2E-17 145.4 19.4 277 52-463 220-515 (519)
75 KOG0264 Nucleosome remodeling 99.5 1.7E-12 3.8E-17 143.2 22.3 110 344-461 290-404 (422)
76 KOG0288 WD40 repeat protein Ti 99.5 1.3E-13 2.9E-18 150.3 13.0 231 76-470 189-426 (459)
77 KOG0283 WD40 repeat-containing 99.5 1.9E-12 4.1E-17 151.4 22.6 197 151-464 367-579 (712)
78 KOG1539 WD repeat protein [Gen 99.5 7.1E-12 1.5E-16 146.1 26.9 94 346-460 553-647 (910)
79 KOG1407 WD40 repeat protein [F 99.5 7.8E-12 1.7E-16 130.3 24.0 232 65-461 68-311 (313)
80 KOG0308 Conserved WD40 repeat- 99.5 6.7E-13 1.4E-17 151.1 16.7 102 344-465 188-289 (735)
81 KOG0772 Uncharacterized conser 99.5 3.8E-12 8.3E-17 141.9 21.7 109 344-468 286-401 (641)
82 KOG2096 WD40 repeat protein [G 99.5 9.3E-12 2E-16 132.4 23.2 97 361-459 270-400 (420)
83 KOG0289 mRNA splicing factor [ 99.5 5.9E-12 1.3E-16 138.2 21.9 226 75-460 232-461 (506)
84 KOG0277 Peroxisomal targeting 99.4 2.8E-12 6E-17 133.2 17.8 247 54-459 47-307 (311)
85 KOG0305 Anaphase promoting com 99.4 1.2E-11 2.6E-16 141.2 23.0 240 74-476 187-434 (484)
86 KOG0277 Peroxisomal targeting 99.4 7.8E-12 1.7E-16 129.9 18.9 111 344-473 165-278 (311)
87 KOG1273 WD40 repeat protein [G 99.4 1.1E-11 2.3E-16 131.9 20.1 240 75-462 35-281 (405)
88 KOG0772 Uncharacterized conser 99.4 4E-12 8.6E-17 141.8 17.6 107 345-469 335-453 (641)
89 KOG0643 Translation initiation 99.4 2.6E-11 5.7E-16 126.7 21.6 212 100-470 5-229 (327)
90 KOG0278 Serine/threonine kinas 99.4 1.2E-11 2.6E-16 128.2 18.8 281 53-464 11-300 (334)
91 KOG0639 Transducin-like enhanc 99.4 9.4E-12 2E-16 138.3 18.6 263 75-460 431-703 (705)
92 KOG0264 Nucleosome remodeling 99.4 1E-11 2.2E-16 137.2 18.5 105 344-467 245-353 (422)
93 KOG1274 WD40 repeat protein [G 99.4 6E-11 1.3E-15 139.8 25.8 242 53-462 10-263 (933)
94 KOG0275 Conserved WD40 repeat- 99.4 2.5E-12 5.5E-17 136.5 13.0 108 344-471 280-388 (508)
95 KOG2445 Nuclear pore complex c 99.4 2.4E-10 5.2E-15 121.6 27.7 278 53-461 10-318 (361)
96 KOG2919 Guanine nucleotide-bin 99.4 1.7E-11 3.8E-16 130.7 18.7 121 347-484 228-351 (406)
97 KOG0289 mRNA splicing factor [ 99.4 7.6E-11 1.6E-15 129.7 24.0 243 51-460 256-505 (506)
98 KOG1332 Vesicle coat complex C 99.4 3.5E-11 7.5E-16 124.5 19.8 264 54-464 9-289 (299)
99 KOG0275 Conserved WD40 repeat- 99.4 2.3E-12 4.9E-17 136.9 10.9 215 172-483 234-489 (508)
100 KOG0641 WD40 repeat protein [G 99.4 5.4E-10 1.2E-14 114.5 27.6 253 55-461 88-349 (350)
101 KOG0640 mRNA cleavage stimulat 99.3 4E-11 8.7E-16 127.2 18.7 99 348-464 237-338 (430)
102 KOG0269 WD40 repeat-containing 99.3 4.1E-12 9E-17 147.1 12.4 111 346-475 196-311 (839)
103 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 2.5E-10 5.5E-15 120.3 24.4 176 172-464 10-190 (300)
104 KOG4378 Nuclear protein COP1 [ 99.3 3.9E-11 8.3E-16 133.4 18.4 192 172-478 100-298 (673)
105 KOG4283 Transcription-coupled 99.3 1.2E-10 2.7E-15 123.0 21.2 129 173-401 124-277 (397)
106 KOG0282 mRNA splicing factor [ 99.3 4.2E-12 9.1E-17 140.9 10.7 207 97-463 206-417 (503)
107 KOG1446 Histone H3 (Lys4) meth 99.3 8E-10 1.7E-14 118.0 26.9 241 55-463 55-305 (311)
108 KOG0270 WD40 repeat-containing 99.3 6.8E-11 1.5E-15 130.4 19.4 179 172-464 265-452 (463)
109 KOG0301 Phospholipase A2-activ 99.3 1.8E-10 3.9E-15 132.4 23.6 199 173-461 35-249 (745)
110 KOG0308 Conserved WD40 repeat- 99.3 1E-11 2.2E-16 141.6 12.4 110 345-474 136-256 (735)
111 KOG0301 Phospholipase A2-activ 99.3 2.3E-10 5E-15 131.6 22.9 214 75-462 72-289 (745)
112 KOG0284 Polyadenylation factor 99.3 1.2E-11 2.7E-16 135.0 11.1 122 343-484 196-317 (464)
113 KOG0296 Angio-associated migra 99.3 4.9E-10 1.1E-14 121.3 22.7 206 98-464 57-266 (399)
114 KOG0267 Microtubule severing p 99.3 9E-12 1.9E-16 143.4 9.9 215 75-452 40-259 (825)
115 KOG0307 Vesicle coat complex C 99.3 2E-11 4.2E-16 146.7 12.8 247 63-464 66-330 (1049)
116 KOG0293 WD40 repeat-containing 99.3 1.2E-10 2.7E-15 127.3 17.7 240 51-401 264-514 (519)
117 KOG1009 Chromatin assembly com 99.3 3.5E-11 7.6E-16 131.5 13.1 210 344-587 31-249 (434)
118 KOG2106 Uncharacterized conser 99.3 3.7E-09 8E-14 118.3 28.8 95 345-458 424-518 (626)
119 KOG0647 mRNA export protein (c 99.3 6.1E-10 1.3E-14 118.3 21.6 251 55-472 26-292 (347)
120 KOG0299 U3 snoRNP-associated p 99.2 3.1E-10 6.7E-15 125.8 19.6 219 73-453 212-447 (479)
121 KOG1408 WD40 repeat protein [F 99.2 5.8E-10 1.2E-14 128.2 22.2 99 344-462 613-714 (1080)
122 KOG2096 WD40 repeat protein [G 99.2 1.7E-10 3.7E-15 123.0 16.2 105 345-462 205-309 (420)
123 KOG0283 WD40 repeat-containing 99.2 3.1E-10 6.6E-15 133.2 19.9 104 344-469 385-489 (712)
124 KOG0294 WD40 repeat-containing 99.2 2.2E-09 4.8E-14 114.6 23.0 209 172-464 62-284 (362)
125 KOG0641 WD40 repeat protein [G 99.2 1.7E-08 3.6E-13 103.7 28.4 98 344-461 199-303 (350)
126 KOG0294 WD40 repeat-containing 99.2 9.3E-10 2E-14 117.4 19.6 220 75-401 53-282 (362)
127 KOG1274 WD40 repeat protein [G 99.2 2.7E-09 5.8E-14 126.1 24.7 223 77-458 68-297 (933)
128 KOG0267 Microtubule severing p 99.2 4.1E-11 8.9E-16 138.1 9.1 176 173-464 50-229 (825)
129 KOG0268 Sof1-like rRNA process 99.2 1.3E-10 2.8E-15 125.6 11.9 215 173-464 89-305 (433)
130 KOG0650 WD40 repeat nucleolar 99.2 1.7E-09 3.6E-14 122.9 20.1 309 54-459 398-733 (733)
131 KOG2048 WD40 repeat protein [G 99.2 1.1E-08 2.3E-13 118.0 26.8 248 51-462 67-320 (691)
132 KOG0300 WD40 repeat-containing 99.2 3.1E-10 6.6E-15 120.7 13.2 100 344-463 289-388 (481)
133 PRK11028 6-phosphogluconolacto 99.1 2.4E-08 5.2E-13 109.7 28.3 102 348-465 196-308 (330)
134 KOG4283 Transcription-coupled 99.1 1.9E-09 4.1E-14 114.1 18.4 109 347-462 166-277 (397)
135 KOG0640 mRNA cleavage stimulat 99.1 1.6E-09 3.4E-14 115.3 17.7 258 55-460 111-425 (430)
136 KOG0646 WD40 repeat protein [G 99.1 4.3E-09 9.2E-14 117.1 21.7 117 344-469 193-315 (476)
137 KOG0313 Microtubule binding pr 99.1 1.4E-09 2.9E-14 118.4 16.9 115 344-476 276-392 (423)
138 KOG2106 Uncharacterized conser 99.1 3.9E-08 8.4E-13 110.3 28.2 125 344-500 385-510 (626)
139 KOG1036 Mitotic spindle checkp 99.1 1.4E-08 3E-13 108.4 23.6 247 54-467 11-268 (323)
140 KOG2055 WD40 repeat protein [G 99.1 1.5E-08 3.2E-13 112.7 24.0 95 347-462 323-418 (514)
141 PRK11028 6-phosphogluconolacto 99.1 9.4E-08 2E-12 105.0 29.3 108 347-468 146-265 (330)
142 KOG0299 U3 snoRNP-associated p 99.1 7.1E-09 1.5E-13 115.2 20.2 175 173-463 224-412 (479)
143 KOG0973 Histone transcription 99.1 5.7E-10 1.2E-14 133.8 12.6 136 347-484 35-182 (942)
144 PRK01742 tolB translocation pr 99.1 2E-08 4.3E-13 115.1 24.5 88 373-483 336-425 (429)
145 KOG0300 WD40 repeat-containing 99.1 1.7E-08 3.7E-13 107.7 21.3 272 43-462 135-429 (481)
146 KOG1408 WD40 repeat protein [F 99.1 6.2E-09 1.3E-13 119.9 19.1 126 344-470 476-635 (1080)
147 KOG1034 Transcriptional repres 99.1 1.1E-08 2.5E-13 109.8 19.8 121 55-222 87-214 (385)
148 KOG1063 RNA polymerase II elon 99.1 2.5E-08 5.4E-13 115.2 23.8 100 348-463 551-650 (764)
149 KOG1272 WD40-repeat-containing 99.0 2.2E-10 4.9E-15 126.9 6.9 208 173-461 151-362 (545)
150 KOG0639 Transducin-like enhanc 99.0 2.8E-09 6.1E-14 118.9 13.7 94 346-460 528-621 (705)
151 KOG0646 WD40 repeat protein [G 99.0 1.7E-08 3.8E-13 112.3 19.8 220 73-442 91-330 (476)
152 KOG2109 WD40 repeat protein [G 99.0 6.6E-10 1.4E-14 127.6 7.7 315 75-473 252-588 (788)
153 KOG4328 WD40 protein [Function 99.0 1.3E-08 2.8E-13 113.1 17.2 239 71-460 196-449 (498)
154 KOG1034 Transcriptional repres 99.0 1.7E-08 3.6E-13 108.5 17.3 100 346-464 112-214 (385)
155 KOG4328 WD40 protein [Function 99.0 1.1E-08 2.4E-13 113.6 16.4 100 346-461 298-399 (498)
156 KOG0650 WD40 repeat nucleolar 99.0 4.6E-09 9.9E-14 119.4 13.7 98 347-463 585-682 (733)
157 KOG0270 WD40 repeat-containing 99.0 1.6E-08 3.5E-13 112.0 17.4 130 52-233 239-375 (463)
158 COG2319 FOG: WD40 repeat [Gene 99.0 1.7E-06 3.6E-11 91.6 32.1 179 172-465 133-318 (466)
159 PRK03629 tolB translocation pr 98.9 5.4E-07 1.2E-11 103.5 29.1 103 350-475 312-419 (429)
160 KOG2048 WD40 repeat protein [G 98.9 8.5E-08 1.8E-12 110.7 21.6 190 173-476 47-248 (691)
161 KOG0269 WD40 repeat-containing 98.9 9.9E-09 2.1E-13 119.6 13.9 100 344-462 151-251 (839)
162 KOG1063 RNA polymerase II elon 98.9 1.1E-07 2.3E-12 110.1 21.5 250 75-463 25-299 (764)
163 KOG0322 G-protein beta subunit 98.9 1.5E-08 3.2E-13 106.3 13.2 69 372-460 254-322 (323)
164 KOG0302 Ribosome Assembly prot 98.9 7.5E-09 1.6E-13 112.7 11.1 105 343-464 274-381 (440)
165 KOG0321 WD40 repeat-containing 98.9 3.6E-08 7.7E-13 113.1 16.2 113 346-476 237-363 (720)
166 PRK05137 tolB translocation pr 98.9 1.5E-06 3.3E-11 99.7 29.6 81 350-452 315-397 (435)
167 KOG4378 Nuclear protein COP1 [ 98.8 7.7E-08 1.7E-12 107.6 16.9 207 75-443 91-305 (673)
168 COG2319 FOG: WD40 repeat [Gene 98.8 5.3E-06 1.1E-10 87.8 30.1 226 78-464 127-362 (466)
169 KOG1332 Vesicle coat complex C 98.8 3.3E-08 7.1E-13 102.8 12.4 100 345-462 122-242 (299)
170 KOG0302 Ribosome Assembly prot 98.8 3.1E-07 6.7E-12 100.4 20.1 109 344-459 319-436 (440)
171 KOG1188 WD40 repeat protein [G 98.8 6.6E-08 1.4E-12 104.5 14.7 104 348-468 142-249 (376)
172 KOG0290 Conserved WD40 repeat- 98.8 5.2E-07 1.1E-11 96.0 19.2 93 346-453 263-358 (364)
173 KOG2110 Uncharacterized conser 98.7 8.2E-06 1.8E-10 89.4 28.5 196 174-466 107-336 (391)
174 KOG0307 Vesicle coat complex C 98.7 3.9E-08 8.4E-13 118.9 11.1 102 345-464 180-287 (1049)
175 PRK02889 tolB translocation pr 98.7 5.5E-06 1.2E-10 95.1 28.1 72 372-464 330-404 (427)
176 KOG1007 WD repeat protein TSSC 98.7 1.2E-06 2.6E-11 93.1 20.4 246 74-462 75-362 (370)
177 KOG0303 Actin-binding protein 98.7 4.4E-07 9.5E-12 99.6 17.6 125 52-227 77-211 (472)
178 PRK04922 tolB translocation pr 98.7 3.9E-06 8.5E-11 96.3 26.5 94 350-465 317-413 (433)
179 KOG1587 Cytoplasmic dynein int 98.7 7.4E-07 1.6E-11 104.7 20.6 97 348-462 419-517 (555)
180 KOG1963 WD40 repeat protein [G 98.7 1.4E-06 3E-11 103.4 22.6 105 344-469 222-330 (792)
181 KOG1273 WD40 repeat protein [G 98.7 6.4E-08 1.4E-12 103.6 10.2 126 344-470 40-192 (405)
182 KOG1445 Tumor-specific antigen 98.7 2.2E-07 4.9E-12 106.2 14.7 97 345-461 696-798 (1012)
183 KOG1517 Guanine nucleotide bin 98.7 1.4E-06 3.1E-11 104.6 21.6 100 344-463 1274-1383(1387)
184 KOG0644 Uncharacterized conser 98.7 8.2E-08 1.8E-12 112.6 10.7 280 52-461 186-468 (1113)
185 KOG0321 WD40 repeat-containing 98.6 9.8E-07 2.1E-11 101.6 18.3 100 348-467 292-397 (720)
186 PF08662 eIF2A: Eukaryotic tra 98.6 3E-07 6.5E-12 94.7 12.6 93 345-461 79-179 (194)
187 KOG0771 Prolactin regulatory e 98.6 4.8E-07 1E-11 100.1 14.8 75 369-462 281-355 (398)
188 KOG1009 Chromatin assembly com 98.6 7.5E-06 1.6E-10 90.5 23.8 95 350-464 262-375 (434)
189 KOG2111 Uncharacterized conser 98.6 6.1E-05 1.3E-09 81.4 29.3 117 345-464 199-325 (346)
190 KOG1188 WD40 repeat protein [G 98.6 9.9E-07 2.2E-11 95.6 15.8 245 74-460 39-345 (376)
191 PF10282 Lactonase: Lactonase, 98.6 6.8E-05 1.5E-09 83.7 31.1 81 371-467 246-328 (345)
192 PF08662 eIF2A: Eukaryotic tra 98.6 2.8E-06 6.2E-11 87.5 17.7 52 347-400 123-179 (194)
193 KOG2394 WD40 protein DMR-N9 [G 98.5 7E-08 1.5E-12 109.0 5.3 96 368-483 289-384 (636)
194 KOG1007 WD repeat protein TSSC 98.5 4.5E-06 9.8E-11 88.9 18.0 103 346-467 190-295 (370)
195 KOG1963 WD40 repeat protein [G 98.5 4.6E-06 9.9E-11 99.2 19.4 236 173-465 37-285 (792)
196 PRK01742 tolB translocation pr 98.5 3.8E-06 8.2E-11 96.4 18.5 89 351-462 274-362 (429)
197 PRK00178 tolB translocation pr 98.5 0.0001 2.2E-09 84.3 29.7 51 173-223 223-279 (430)
198 KOG3881 Uncharacterized conser 98.5 1E-05 2.2E-10 89.2 19.6 103 345-466 222-325 (412)
199 KOG1445 Tumor-specific antigen 98.5 3.1E-07 6.7E-12 105.1 7.8 104 345-470 646-757 (1012)
200 KOG1517 Guanine nucleotide bin 98.5 1.6E-05 3.5E-10 95.9 22.3 100 346-461 1228-1333(1387)
201 KOG2445 Nuclear pore complex c 98.4 1.9E-05 4.1E-10 84.9 20.5 110 344-464 30-147 (361)
202 PRK05137 tolB translocation pr 98.4 2.8E-05 6.1E-10 89.4 23.5 91 349-460 270-365 (435)
203 KOG1538 Uncharacterized conser 98.4 3.5E-06 7.6E-11 97.2 15.4 144 194-459 14-160 (1081)
204 KOG0642 Cell-cycle nuclear pro 98.4 6.3E-07 1.4E-11 102.1 9.4 108 344-461 311-426 (577)
205 KOG1524 WD40 repeat-containing 98.4 5.9E-06 1.3E-10 93.6 16.7 207 75-461 75-287 (737)
206 KOG2139 WD40 repeat protein [G 98.4 3.3E-06 7.1E-11 92.2 13.3 77 366-462 193-269 (445)
207 PRK03629 tolB translocation pr 98.4 4.3E-05 9.3E-10 87.9 23.1 94 350-462 268-364 (429)
208 KOG0771 Prolactin regulatory e 98.4 1.3E-06 2.7E-11 96.8 9.9 129 344-474 161-325 (398)
209 TIGR02800 propeller_TolB tol-p 98.4 0.00014 3E-09 82.3 26.2 86 350-457 303-390 (417)
210 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.001 2.2E-08 74.7 32.5 100 347-466 213-335 (352)
211 PRK04922 tolB translocation pr 98.4 3.6E-05 7.7E-10 88.5 21.7 95 349-462 272-369 (433)
212 KOG0649 WD40 repeat protein [G 98.4 0.0002 4.4E-09 75.1 24.8 86 172-260 135-224 (325)
213 KOG0290 Conserved WD40 repeat- 98.4 1.6E-05 3.4E-10 84.9 17.0 103 345-465 215-322 (364)
214 COG2706 3-carboxymuconate cycl 98.3 0.00089 1.9E-08 73.8 30.8 105 348-468 212-328 (346)
215 PRK04792 tolB translocation pr 98.3 0.00043 9.2E-09 80.3 29.0 94 350-464 331-426 (448)
216 PRK02889 tolB translocation pr 98.3 5.8E-05 1.3E-09 86.7 21.5 94 350-462 265-361 (427)
217 KOG2394 WD40 protein DMR-N9 [G 98.3 7E-06 1.5E-10 93.3 12.9 69 327-400 294-362 (636)
218 KOG0303 Actin-binding protein 98.3 3.7E-06 8E-11 92.6 10.1 109 344-473 99-215 (472)
219 PF00400 WD40: WD domain, G-be 98.2 2E-06 4.4E-11 64.6 5.6 38 360-398 2-39 (39)
220 PRK01029 tolB translocation pr 98.2 0.00069 1.5E-08 78.2 26.8 91 351-461 307-403 (428)
221 TIGR02800 propeller_TolB tol-p 98.2 0.00027 5.8E-09 79.9 22.9 93 349-462 258-355 (417)
222 KOG0649 WD40 repeat protein [G 98.1 9E-05 1.9E-09 77.7 16.2 97 346-464 133-238 (325)
223 PRK04792 tolB translocation pr 98.1 0.0003 6.6E-09 81.5 22.1 96 350-465 287-384 (448)
224 KOG0322 G-protein beta subunit 98.1 3.9E-05 8.3E-10 81.2 12.5 55 344-399 268-322 (323)
225 KOG0644 Uncharacterized conser 98.0 1.8E-06 3.9E-11 101.7 1.5 94 344-461 207-300 (1113)
226 KOG1538 Uncharacterized conser 98.0 0.00033 7.1E-09 81.4 19.1 253 75-461 24-293 (1081)
227 KOG1524 WD40 repeat-containing 98.0 8.7E-05 1.9E-09 84.5 14.1 85 349-456 166-250 (737)
228 KOG4227 WD40 repeat protein [G 98.0 0.0008 1.7E-08 74.3 20.9 237 173-460 127-386 (609)
229 KOG1587 Cytoplasmic dynein int 98.0 0.00024 5.1E-09 84.0 18.1 99 345-462 366-473 (555)
230 PRK00178 tolB translocation pr 98.0 0.0011 2.4E-08 75.9 23.1 93 349-462 267-364 (430)
231 PF02239 Cytochrom_D1: Cytochr 98.0 0.0033 7.1E-08 71.3 26.4 177 173-465 16-206 (369)
232 PRK04043 tolB translocation pr 97.9 0.0093 2E-07 68.8 30.1 49 174-222 214-268 (419)
233 KOG2919 Guanine nucleotide-bin 97.9 0.00069 1.5E-08 73.6 18.8 53 344-400 314-367 (406)
234 KOG0642 Cell-cycle nuclear pro 97.9 7.1E-05 1.5E-09 85.8 11.9 55 345-400 507-561 (577)
235 KOG1272 WD40-repeat-containing 97.9 3.4E-05 7.4E-10 86.6 8.7 270 74-471 140-417 (545)
236 KOG3881 Uncharacterized conser 97.9 0.0005 1.1E-08 76.2 17.3 80 345-445 265-345 (412)
237 PF02239 Cytochrom_D1: Cytochr 97.9 0.00015 3.2E-09 82.2 13.7 104 346-470 13-117 (369)
238 KOG0974 WD-repeat protein WDR6 97.9 0.0002 4.3E-09 86.9 15.4 94 346-461 152-246 (967)
239 KOG1310 WD40 repeat protein [G 97.9 3E-05 6.6E-10 88.3 8.0 115 362-495 43-169 (758)
240 KOG0974 WD-repeat protein WDR6 97.8 0.00073 1.6E-08 82.2 18.2 102 345-468 193-295 (967)
241 PRK01029 tolB translocation pr 97.7 0.0028 6.1E-08 73.1 21.1 76 371-462 282-360 (428)
242 KOG1240 Protein kinase contain 97.7 0.0056 1.2E-07 75.9 24.1 103 346-465 1214-1338(1431)
243 KOG4497 Uncharacterized conser 97.7 0.00051 1.1E-08 74.7 13.3 93 346-459 111-238 (447)
244 KOG1310 WD40 repeat protein [G 97.7 0.0014 3E-08 75.3 17.2 121 344-467 165-309 (758)
245 KOG2315 Predicted translation 97.7 0.003 6.5E-08 72.9 20.0 152 171-443 249-412 (566)
246 PF10282 Lactonase: Lactonase, 97.7 0.027 5.9E-07 63.0 27.5 54 348-401 266-323 (345)
247 KOG2321 WD40 repeat protein [G 97.7 0.003 6.6E-08 72.9 19.6 107 345-470 193-311 (703)
248 KOG1354 Serine/threonine prote 97.6 0.0028 6.1E-08 69.5 17.6 78 369-462 272-360 (433)
249 PLN02919 haloacid dehalogenase 97.6 0.037 8.1E-07 70.8 30.5 73 373-464 807-891 (1057)
250 KOG2321 WD40 repeat protein [G 97.6 0.0012 2.5E-08 76.2 15.2 180 77-399 148-342 (703)
251 KOG4547 WD40 repeat-containing 97.6 0.0066 1.4E-07 70.4 21.2 53 348-400 163-220 (541)
252 KOG1334 WD40 repeat protein [G 97.5 0.0016 3.4E-08 74.0 14.7 122 51-223 137-267 (559)
253 PF00400 WD40: WD domain, G-be 97.5 0.00033 7.1E-09 52.5 6.5 37 421-459 3-39 (39)
254 KOG3914 WD repeat protein WDR4 97.5 0.0014 3E-08 73.0 13.2 97 349-466 132-228 (390)
255 KOG2139 WD40 repeat protein [G 97.4 0.024 5.3E-07 62.8 21.9 101 75-220 153-269 (445)
256 PF13360 PQQ_2: PQQ-like domai 97.4 0.2 4.4E-06 51.7 27.4 93 346-463 129-232 (238)
257 KOG1240 Protein kinase contain 97.3 0.0031 6.8E-08 78.0 14.9 97 354-464 1034-1131(1431)
258 KOG4547 WD40 repeat-containing 97.3 0.017 3.6E-07 67.2 19.4 96 345-462 120-221 (541)
259 KOG1409 Uncharacterized conser 97.3 0.0077 1.7E-07 66.2 15.6 219 171-463 44-272 (404)
260 KOG2315 Predicted translation 97.2 0.082 1.8E-06 61.5 23.8 100 349-471 251-354 (566)
261 KOG1523 Actin-related protein 97.1 0.007 1.5E-07 66.0 13.7 97 347-460 75-175 (361)
262 PF04762 IKI3: IKI3 family; I 97.1 0.56 1.2E-05 59.5 32.3 98 348-463 236-335 (928)
263 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.0073 1.6E-07 68.0 13.9 99 349-466 27-141 (352)
264 KOG4497 Uncharacterized conser 97.1 0.0034 7.4E-08 68.5 10.6 89 346-454 68-156 (447)
265 PRK04043 tolB translocation pr 97.0 0.054 1.2E-06 62.6 20.6 97 348-465 256-359 (419)
266 smart00320 WD40 WD40 repeats. 97.0 0.0018 4E-08 44.9 5.4 38 360-398 3-40 (40)
267 KOG1275 PAB-dependent poly(A) 97.0 0.021 4.6E-07 69.2 16.9 183 172-460 156-341 (1118)
268 KOG1064 RAVE (regulator of V-A 96.9 0.0033 7.2E-08 80.2 10.2 88 347-465 2313-2402(2439)
269 KOG2314 Translation initiation 96.9 0.13 2.8E-06 59.9 21.5 292 74-462 221-526 (698)
270 COG2706 3-carboxymuconate cycl 96.9 0.75 1.6E-05 51.3 26.5 31 372-402 293-323 (346)
271 TIGR03300 assembly_YfgL outer 96.8 1.3 2.8E-05 49.8 28.8 91 346-459 286-377 (377)
272 COG5354 Uncharacterized protei 96.7 0.17 3.6E-06 58.5 20.8 281 74-461 43-348 (561)
273 TIGR03300 assembly_YfgL outer 96.7 0.94 2E-05 50.9 27.2 57 173-229 115-173 (377)
274 PF11768 DUF3312: Protein of u 96.7 0.011 2.5E-07 68.9 11.7 91 351-463 238-331 (545)
275 KOG1334 WD40 repeat protein [G 96.5 0.0094 2E-07 67.9 8.7 55 344-399 411-465 (559)
276 COG4946 Uncharacterized protei 96.5 0.031 6.7E-07 63.7 12.6 98 345-463 377-479 (668)
277 KOG1912 WD40 repeat protein [G 96.4 0.056 1.2E-06 64.8 14.9 103 344-463 442-553 (1062)
278 KOG1912 WD40 repeat protein [G 96.4 0.25 5.4E-06 59.5 19.8 125 64-228 18-152 (1062)
279 PF03178 CPSF_A: CPSF A subuni 96.3 0.25 5.4E-06 54.5 19.1 95 349-463 107-204 (321)
280 COG4946 Uncharacterized protei 96.3 1.7 3.8E-05 50.1 25.0 119 54-229 357-486 (668)
281 KOG1645 RING-finger-containing 96.2 0.011 2.4E-07 66.1 7.7 95 351-466 175-271 (463)
282 KOG1523 Actin-related protein 96.2 0.027 5.8E-07 61.6 10.3 100 346-462 29-131 (361)
283 PF07433 DUF1513: Protein of u 96.2 1.5 3.2E-05 48.7 23.6 102 350-463 139-249 (305)
284 PF03178 CPSF_A: CPSF A subuni 96.2 2.8 6E-05 46.3 26.9 50 173-222 62-118 (321)
285 KOG1275 PAB-dependent poly(A) 96.1 0.077 1.7E-06 64.6 14.4 100 75-223 148-258 (1118)
286 KOG4227 WD40 repeat protein [G 96.0 0.053 1.2E-06 60.4 11.5 103 344-464 73-182 (609)
287 COG5170 CDC55 Serine/threonine 95.6 0.94 2E-05 49.8 18.6 80 365-462 276-368 (460)
288 PLN02919 haloacid dehalogenase 95.6 1.9 4.1E-05 55.6 24.5 86 372-462 742-834 (1057)
289 KOG4532 WD40-like repeat conta 95.3 0.95 2.1E-05 49.0 17.1 99 347-464 136-236 (344)
290 PF15492 Nbas_N: Neuroblastoma 95.2 4 8.7E-05 44.6 21.4 31 368-399 228-258 (282)
291 smart00320 WD40 WD40 repeats. 95.1 0.078 1.7E-06 36.3 5.9 29 431-459 12-40 (40)
292 PF15492 Nbas_N: Neuroblastoma 95.1 2.5 5.5E-05 46.1 19.6 97 368-464 146-262 (282)
293 KOG0280 Uncharacterized conser 94.9 0.16 3.4E-06 55.3 10.1 102 346-465 140-245 (339)
294 PF04762 IKI3: IKI3 family; I 94.9 5 0.00011 51.2 25.0 76 367-460 302-378 (928)
295 KOG4190 Uncharacterized conser 94.8 0.11 2.4E-06 60.1 8.9 116 344-463 752-908 (1034)
296 KOG4532 WD40-like repeat conta 94.6 1.1 2.3E-05 48.6 15.1 97 342-452 218-323 (344)
297 KOG4714 Nucleoporin [Nuclear s 94.6 0.084 1.8E-06 56.5 6.9 114 344-459 197-316 (319)
298 KOG4415 Uncharacterized conser 94.6 0.023 4.9E-07 57.7 2.6 36 684-720 22-58 (247)
299 PF13360 PQQ_2: PQQ-like domai 94.2 7.8 0.00017 39.9 23.2 57 173-229 86-150 (238)
300 PF07433 DUF1513: Protein of u 94.0 12 0.00027 41.6 27.0 72 368-464 215-286 (305)
301 PRK11138 outer membrane biogen 94.0 14 0.00029 42.1 26.1 55 173-227 215-282 (394)
302 PF08553 VID27: VID27 cytoplas 93.9 4.1 9E-05 50.7 20.5 54 345-400 594-647 (794)
303 KOG1832 HIV-1 Vpr-binding prot 93.9 0.054 1.2E-06 65.5 4.3 107 75-229 1113-1224(1516)
304 KOG3621 WD40 repeat-containing 93.8 0.17 3.7E-06 60.3 8.0 102 345-462 51-155 (726)
305 KOG1064 RAVE (regulator of V-A 93.7 0.25 5.3E-06 64.3 9.6 117 344-465 2225-2370(2439)
306 KOG2695 WD40 repeat protein [G 93.5 0.2 4.4E-06 55.5 7.5 103 345-463 270-378 (425)
307 PF08450 SGL: SMP-30/Gluconola 92.6 15 0.00033 38.6 26.5 99 349-461 115-213 (246)
308 KOG4640 Anaphase-promoting com 92.6 0.44 9.6E-06 56.4 9.0 76 371-468 22-99 (665)
309 PF12894 Apc4_WD40: Anaphase-p 92.4 0.35 7.7E-06 38.8 5.6 31 431-461 11-41 (47)
310 COG0823 TolB Periplasmic compo 92.4 8.1 0.00018 45.0 19.0 84 350-452 263-346 (425)
311 KOG0309 Conserved WD40 repeat- 92.2 1.3 2.8E-05 53.5 12.0 51 349-400 180-232 (1081)
312 KOG0280 Uncharacterized conser 92.1 0.49 1.1E-05 51.6 7.9 102 344-466 183-289 (339)
313 KOG4190 Uncharacterized conser 92.1 0.17 3.7E-06 58.6 4.7 84 361-459 727-810 (1034)
314 KOG2066 Vacuolar assembly/sort 92.1 0.53 1.1E-05 57.1 8.8 91 345-465 55-150 (846)
315 PRK02888 nitrous-oxide reducta 91.4 1.7 3.7E-05 52.4 12.2 116 345-464 211-354 (635)
316 KOG2314 Translation initiation 91.1 0.6 1.3E-05 54.6 7.7 94 350-464 232-337 (698)
317 PF00780 CNH: CNH domain; Int 90.7 26 0.00056 37.3 24.1 40 75-116 7-46 (275)
318 KOG2395 Protein involved in va 90.5 13 0.00028 44.0 17.5 53 345-399 447-499 (644)
319 PF00930 DPPIV_N: Dipeptidyl p 90.4 0.81 1.8E-05 51.4 8.0 102 348-464 22-134 (353)
320 COG5354 Uncharacterized protei 90.4 0.38 8.2E-06 55.7 5.3 88 354-464 17-119 (561)
321 PF08450 SGL: SMP-30/Gluconola 90.0 28 0.00061 36.6 29.7 60 371-451 185-245 (246)
322 KOG2114 Vacuolar assembly/sort 89.1 47 0.001 41.4 21.4 82 349-454 193-276 (933)
323 KOG1920 IkappaB kinase complex 89.1 32 0.00069 44.3 20.5 124 349-513 222-353 (1265)
324 PF12894 Apc4_WD40: Anaphase-p 88.9 1 2.2E-05 36.3 5.2 30 369-399 11-40 (47)
325 COG0823 TolB Periplasmic compo 88.9 1.6 3.5E-05 50.6 9.1 98 349-467 218-318 (425)
326 KOG3617 WD40 and TPR repeat-co 88.9 0.96 2.1E-05 55.2 7.2 98 344-465 36-135 (1416)
327 KOG1354 Serine/threonine prote 88.6 1.3 2.8E-05 49.3 7.5 80 370-466 26-121 (433)
328 KOG3914 WD repeat protein WDR4 88.5 8.1 0.00018 43.9 13.7 55 345-401 169-224 (390)
329 KOG1897 Damage-specific DNA bi 88.5 72 0.0016 40.6 22.6 96 348-461 847-942 (1096)
330 KOG1897 Damage-specific DNA bi 88.2 86 0.0019 39.9 26.8 84 363-462 709-816 (1096)
331 PF00780 CNH: CNH domain; Int 87.8 16 0.00035 38.9 15.4 48 182-229 216-265 (275)
332 KOG1645 RING-finger-containing 87.7 1.6 3.5E-05 49.4 7.7 52 172-223 215-270 (463)
333 KOG4640 Anaphase-promoting com 87.5 1.7 3.7E-05 51.7 8.0 55 345-401 38-93 (665)
334 KOG4714 Nucleoporin [Nuclear s 87.2 0.76 1.6E-05 49.5 4.5 95 349-462 159-255 (319)
335 PRK11138 outer membrane biogen 86.9 16 0.00034 41.6 15.5 54 172-226 265-319 (394)
336 PF11768 DUF3312: Protein of u 86.7 1.3 2.8E-05 52.3 6.5 55 345-402 277-331 (545)
337 cd00216 PQQ_DH Dehydrogenases 86.2 78 0.0017 37.4 21.8 57 173-229 71-138 (488)
338 PF14783 BBS2_Mid: Ciliary BBS 86.1 7.8 0.00017 36.9 10.2 65 372-460 2-70 (111)
339 KOG2041 WD40 repeat protein [G 85.6 1.6 3.4E-05 52.6 6.4 98 345-460 32-144 (1189)
340 KOG2066 Vacuolar assembly/sort 84.7 33 0.00071 42.4 16.8 47 173-219 93-146 (846)
341 KOG2695 WD40 repeat protein [G 84.7 1.7 3.6E-05 48.6 5.7 109 347-473 232-344 (425)
342 PRK13616 lipoprotein LpqB; Pro 84.1 6.5 0.00014 47.7 11.0 94 348-462 378-477 (591)
343 KOG0882 Cyclophilin-related pe 83.9 3.5 7.6E-05 47.5 8.0 114 347-466 120-236 (558)
344 KOG2079 Vacuolar assembly/sort 83.7 1.3 2.7E-05 55.6 4.8 81 375-475 93-174 (1206)
345 PF04841 Vps16_N: Vps16, N-ter 83.6 94 0.002 36.0 24.0 48 172-220 60-110 (410)
346 PF05694 SBP56: 56kDa selenium 83.0 13 0.00029 43.2 12.3 46 172-217 221-275 (461)
347 KOG1409 Uncharacterized conser 82.8 5.7 0.00012 44.5 8.8 114 357-476 102-243 (404)
348 PF04053 Coatomer_WDAD: Coatom 81.6 1E+02 0.0023 36.2 19.3 58 381-462 117-174 (443)
349 COG3386 Gluconolactonase [Carb 81.5 95 0.0021 34.7 20.7 52 348-400 142-193 (307)
350 PF08553 VID27: VID27 cytoplas 81.5 15 0.00032 46.1 12.7 93 347-461 550-647 (794)
351 KOG2079 Vacuolar assembly/sort 80.5 4.1 8.8E-05 51.3 7.4 56 345-401 105-161 (1206)
352 KOG1832 HIV-1 Vpr-binding prot 80.1 1 2.2E-05 55.2 2.2 100 344-465 1118-1218(1516)
353 COG3391 Uncharacterized conser 80.0 25 0.00053 40.2 13.3 94 348-462 95-191 (381)
354 cd00216 PQQ_DH Dehydrogenases 78.8 1.5E+02 0.0032 35.2 20.1 57 173-229 120-193 (488)
355 KOG2444 WD40 repeat protein [G 78.6 4.1 8.9E-05 43.3 5.8 103 345-467 76-183 (238)
356 KOG0309 Conserved WD40 repeat- 78.4 12 0.00026 45.6 10.1 97 361-476 106-204 (1081)
357 KOG2114 Vacuolar assembly/sort 77.8 9.3 0.0002 47.2 9.2 103 345-459 41-153 (933)
358 PF06433 Me-amine-dh_H: Methyl 77.5 5.3 0.00011 45.0 6.6 57 173-229 269-330 (342)
359 PRK02888 nitrous-oxide reducta 77.5 18 0.00039 44.0 11.4 106 348-462 295-405 (635)
360 PF10168 Nup88: Nuclear pore c 74.6 34 0.00073 42.7 13.1 91 369-464 84-182 (717)
361 PF10313 DUF2415: Uncharacteri 74.1 8.3 0.00018 30.6 5.0 29 434-462 3-34 (43)
362 PF08596 Lgl_C: Lethal giant l 73.4 24 0.00051 40.8 10.8 83 361-462 78-174 (395)
363 COG3386 Gluconolactonase [Carb 73.1 28 0.00061 38.9 10.9 77 370-465 111-197 (307)
364 PF00930 DPPIV_N: Dipeptidyl p 70.8 1.2E+02 0.0027 33.9 15.7 50 173-222 23-74 (353)
365 PRK13616 lipoprotein LpqB; Pro 70.4 25 0.00053 42.8 10.5 99 348-466 429-530 (591)
366 PF07676 PD40: WD40-like Beta 69.9 14 0.0003 27.6 5.4 31 367-397 6-38 (39)
367 COG3490 Uncharacterized protei 69.5 37 0.00079 37.7 10.3 42 347-388 138-180 (366)
368 PF10313 DUF2415: Uncharacteri 69.3 11 0.00024 30.0 4.7 30 370-400 1-33 (43)
369 PF07676 PD40: WD40-like Beta 69.3 9.6 0.00021 28.5 4.4 26 433-458 10-38 (39)
370 PF02897 Peptidase_S9_N: Proly 68.9 43 0.00092 38.2 11.6 101 344-462 145-259 (414)
371 PF14781 BBS2_N: Ciliary BBSom 67.3 99 0.0021 30.6 11.8 58 171-228 71-134 (136)
372 PF14870 PSII_BNR: Photosynthe 67.2 27 0.00059 38.9 9.2 70 369-459 144-213 (302)
373 KOG2041 WD40 repeat protein [G 67.1 6.2 0.00013 47.8 4.3 95 344-461 88-186 (1189)
374 PF02897 Peptidase_S9_N: Proly 66.8 25 0.00055 40.0 9.2 73 371-463 125-212 (414)
375 COG3391 Uncharacterized conser 66.4 84 0.0018 35.9 13.3 94 347-462 138-240 (381)
376 PF08596 Lgl_C: Lethal giant l 66.3 71 0.0015 36.9 12.7 86 371-460 3-114 (395)
377 PF14781 BBS2_N: Ciliary BBSom 64.7 38 0.00083 33.4 8.5 53 173-225 20-87 (136)
378 KOG4649 PQQ (pyrrolo-quinoline 63.8 1.8E+02 0.0039 32.1 14.0 57 172-229 32-91 (354)
379 KOG3617 WD40 and TPR repeat-co 62.3 16 0.00034 45.4 6.4 55 345-400 77-131 (1416)
380 PF10647 Gmad1: Lipoprotein Lp 61.8 90 0.0019 33.6 11.8 78 371-464 67-147 (253)
381 COG5170 CDC55 Serine/threonine 55.3 5.9 0.00013 43.8 1.3 81 366-462 169-253 (460)
382 PF08728 CRT10: CRT10; InterP 54.9 3.2E+02 0.007 34.2 15.9 74 371-461 165-246 (717)
383 PF06433 Me-amine-dh_H: Methyl 54.2 43 0.00093 37.9 7.9 51 350-401 270-321 (342)
384 PF14583 Pectate_lyase22: Olig 54.1 4.1E+02 0.0088 30.9 19.1 41 171-211 166-209 (386)
385 KOG1920 IkappaB kinase complex 53.9 54 0.0012 42.4 9.3 69 369-458 68-136 (1265)
386 PF14655 RAB3GAP2_N: Rab3 GTPa 52.3 90 0.0019 36.5 10.3 40 361-401 299-338 (415)
387 PF12234 Rav1p_C: RAVE protein 52.2 2.7E+02 0.0059 34.3 14.6 26 193-218 129-155 (631)
388 smart00036 CNH Domain found in 50.6 1.3E+02 0.0029 33.2 11.1 38 76-115 14-52 (302)
389 PF05787 DUF839: Bacterial pro 49.9 35 0.00075 41.0 6.7 74 374-448 440-518 (524)
390 smart00036 CNH Domain found in 48.3 3E+02 0.0065 30.5 13.4 42 187-228 238-279 (302)
391 PF06977 SdiA-regulated: SdiA- 48.1 2.1E+02 0.0046 31.0 11.7 82 364-465 16-98 (248)
392 PF02333 Phytase: Phytase; In 47.3 1.6E+02 0.0034 34.1 11.0 66 379-465 66-139 (381)
393 PF01731 Arylesterase: Arylest 46.6 90 0.0019 28.4 7.3 50 348-400 35-84 (86)
394 PF07250 Glyoxal_oxid_N: Glyox 46.5 51 0.0011 35.6 6.7 89 351-452 48-138 (243)
395 TIGR02276 beta_rpt_yvtn 40-res 45.4 1.1E+02 0.0024 22.6 6.7 23 379-401 1-23 (42)
396 KOG3621 WD40 repeat-containing 45.0 39 0.00085 41.2 6.0 79 368-466 32-110 (726)
397 PF04841 Vps16_N: Vps16, N-ter 44.2 1.4E+02 0.003 34.7 10.3 39 420-461 71-109 (410)
398 KOG1916 Nuclear protein, conta 43.7 16 0.00034 45.7 2.5 54 345-400 201-265 (1283)
399 smart00440 ZnF_C2C2 C2C2 Zinc 39.6 20 0.00043 27.8 1.7 15 804-818 18-32 (40)
400 PF05096 Glu_cyclase_2: Glutam 39.0 1.6E+02 0.0034 32.4 9.0 57 172-228 109-166 (264)
401 PF12657 TFIIIC_delta: Transcr 38.5 2.5E+02 0.0055 28.3 10.1 29 433-461 87-121 (173)
402 PF14783 BBS2_Mid: Ciliary BBS 36.8 3.9E+02 0.0084 25.6 11.5 50 345-399 21-70 (111)
403 TIGR03074 PQQ_membr_DH membran 36.3 1E+03 0.022 30.3 18.5 57 173-229 270-354 (764)
404 PF12234 Rav1p_C: RAVE protein 35.9 3.4E+02 0.0073 33.6 12.0 81 363-462 23-105 (631)
405 KOG2395 Protein involved in va 34.9 4.5E+02 0.0097 31.8 12.2 92 347-460 402-499 (644)
406 PF10395 Utp8: Utp8 family; I 33.2 4.8E+02 0.01 32.5 12.6 53 170-222 248-308 (670)
407 PF03022 MRJP: Major royal jel 33.1 1.9E+02 0.004 31.9 8.7 58 172-229 33-106 (287)
408 PF04053 Coatomer_WDAD: Coatom 32.4 93 0.002 36.6 6.5 45 173-218 126-172 (443)
409 PF01096 TFIIS_C: Transcriptio 32.2 33 0.00071 26.5 1.8 16 803-818 17-32 (39)
410 KOG0882 Cyclophilin-related pe 32.0 25 0.00054 40.9 1.6 58 344-401 25-85 (558)
411 PF11715 Nup160: Nucleoporin N 31.9 2.2E+02 0.0049 33.9 9.8 75 74-190 157-257 (547)
412 PRK13684 Ycf48-like protein; P 31.8 1.9E+02 0.0042 32.4 8.7 67 369-456 172-238 (334)
413 KOG4460 Nuclear pore complex, 31.1 2.3E+02 0.005 34.1 9.0 88 371-463 105-200 (741)
414 COG3211 PhoX Predicted phospha 30.9 1.1E+02 0.0025 36.8 6.7 63 373-448 503-570 (616)
415 PF10647 Gmad1: Lipoprotein Lp 30.5 2.4E+02 0.0053 30.3 8.9 67 371-459 25-93 (253)
416 PF12341 DUF3639: Protein of u 30.3 92 0.002 22.4 3.7 25 433-459 3-27 (27)
417 KOG2444 WD40 repeat protein [G 30.2 51 0.0011 35.4 3.5 56 345-401 120-178 (238)
418 PF03088 Str_synth: Strictosid 30.0 1.4E+02 0.003 27.4 5.8 44 345-389 33-76 (89)
419 PF03022 MRJP: Major royal jel 29.5 7.9E+02 0.017 27.0 13.6 107 350-462 35-160 (287)
420 TIGR03075 PQQ_enz_alc_DH PQQ-d 29.2 1.7E+02 0.0036 35.2 8.1 57 173-229 441-500 (527)
421 KOG1898 Splicing factor 3b, su 27.3 9E+02 0.02 31.7 13.7 59 173-232 954-1018(1205)
422 PF13570 PQQ_3: PQQ-like domai 26.5 1.4E+02 0.0031 22.4 4.5 35 186-220 4-40 (40)
423 KOG1008 Uncharacterized conser 26.3 25 0.00055 42.4 0.5 92 347-460 127-224 (783)
424 PF07569 Hira: TUP1-like enhan 26.3 1.2E+02 0.0025 32.2 5.4 38 187-224 7-45 (219)
425 PRK10115 protease 2; Provision 26.0 5.5E+02 0.012 31.9 12.0 101 344-462 148-256 (686)
426 PF07569 Hira: TUP1-like enhan 24.8 3.2E+02 0.0069 28.9 8.4 77 371-462 14-96 (219)
427 PRK10115 protease 2; Provision 24.1 3.6E+02 0.0078 33.6 9.8 73 370-463 127-209 (686)
428 TIGR03118 PEPCTERM_chp_1 conse 23.9 5.4E+02 0.012 29.1 10.0 54 345-401 218-280 (336)
429 PF06977 SdiA-regulated: SdiA- 23.8 5.6E+02 0.012 27.8 10.1 73 368-458 169-247 (248)
430 smart00564 PQQ beta-propeller 23.3 1.7E+02 0.0036 20.6 4.2 24 204-227 9-32 (33)
431 TIGR02604 Piru_Ver_Nterm putat 23.3 2E+02 0.0044 32.5 7.0 68 368-453 122-205 (367)
432 PF03088 Str_synth: Strictosid 23.2 3.3E+02 0.0071 25.0 7.0 16 434-449 59-74 (89)
433 PF14761 HPS3_N: Hermansky-Pud 23.1 2.7E+02 0.0059 29.7 7.3 44 391-452 37-80 (215)
434 KOG1900 Nuclear pore complex, 22.4 6.3E+02 0.014 33.7 11.4 34 367-401 240-273 (1311)
435 COG2133 Glucose/sorbosone dehy 22.0 2.7E+02 0.0058 32.4 7.6 21 370-390 177-197 (399)
436 KOG1898 Splicing factor 3b, su 21.7 1.9E+03 0.042 28.9 19.3 95 349-463 954-1050(1205)
437 KOG2377 Uncharacterized conser 21.3 2.4E+02 0.0052 33.4 6.9 87 369-473 66-153 (657)
438 KOG3630 Nuclear pore complex, 21.2 94 0.002 40.2 3.9 93 348-460 123-227 (1405)
439 PF14727 PHTB1_N: PTHB1 N-term 21.1 1.4E+03 0.03 26.9 28.2 52 171-222 95-166 (418)
440 PF01436 NHL: NHL repeat; Int 20.6 1.8E+02 0.0039 20.5 3.7 25 434-458 4-28 (28)
441 KOG1916 Nuclear protein, conta 20.4 49 0.0011 41.6 1.3 97 347-464 151-268 (1283)
No 1
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-60 Score=534.85 Aligned_cols=639 Identities=30% Similarity=0.345 Sum_probs=475.7
Q ss_pred CCchhhhhhceeeeeccCCcceeeeccccccccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 003221 12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV 91 (838)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~a~~i~~~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv 91 (838)
+|+|||+||.|+|+.|+|+.+++ .|+++..+.+.++++|||+|++||+ .+..+++||++++.+|||+||.
T Consensus 1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~ 70 (788)
T KOG2109|consen 1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE 70 (788)
T ss_pred CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence 59999999999999998777665 4567777788899999999999995 3556789999999999999999
Q ss_pred cCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCC
Q 003221 92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNS 171 (838)
Q Consensus 92 ~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~ 171 (838)
++..++.+..+.+|+++.+++|++.|+.+...++|+.++|++|+|..+ .+...--.+ ++|+-. ...
T Consensus 71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t---~S~p~I~~S-----~~Gse~------d~t 136 (788)
T KOG2109|consen 71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTT---TSPPTIPPS-----QTGSEQ------DST 136 (788)
T ss_pred ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeecccc---cCCCcCCCC-----CCccee------ccc
Confidence 999999999999999999999999999988888899999999986521 111000001 233310 123
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeE
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~A 251 (838)
+....++|+++..+++.|+|+ +|+|||+.|++..+.+..++.|.. ..++||++++
T Consensus 137 ~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpla 191 (788)
T KOG2109|consen 137 QANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLA 191 (788)
T ss_pred ccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeecccccc
Confidence 455778999999999999987 899999999999898888887632 3557899999
Q ss_pred EcccEEEEeCCCceeecCCCCCCcccCC-CCCCCCCCCCCCcceeeeehhhhhhhhcccc-------ccccccccccCCC
Q 003221 252 VGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLPD 323 (838)
Q Consensus 252 lspr~LAys~~~~~l~~~G~vs~q~l~~-~~~s~stsps~gslva~~A~ds~k~la~Gl~-------ktls~y~~~~~p~ 323 (838)
++.||+||+...+.- ++.+.+++ +.++|++++..+-.+|++|+++.+++|.||. +++++||...++.
T Consensus 192 Vg~rWaaya~~~a~~-----vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~ 266 (788)
T KOG2109|consen 192 VGRRWAAYAQTLANQ-----VSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQI 266 (788)
T ss_pred ceeeeeeeccCcchh-----hhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCC
Confidence 999999999865431 12244555 7788888888888999999999999999966 6889999987765
Q ss_pred CCCCCccCCCccccccccccccCC-Cce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 324 GSSSPVSPNSVWKVGRHAGADMDN-AGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 324 gs~s~~s~n~~~k~~~~~~~~g~~-~G~--V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+......-......++...+++.. -|+ +.+-|+.+...+.+|++|++||++|+|+++|.+|++++..|+.|++|+++
T Consensus 267 g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim 346 (788)
T KOG2109|consen 267 GTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM 346 (788)
T ss_pred CCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec
Confidence 533222111111122222222322 456 99999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCc
Q 003221 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPY 480 (838)
Q Consensus 401 p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~ 480 (838)
+....++.+.++.+|+ .||++.+.|++|+|+.+.+|++++|.+|+= |.
T Consensus 347 et~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~ 394 (788)
T KOG2109|consen 347 ETVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PA 394 (788)
T ss_pred cccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------cc
Confidence 8544333332222221 589999999999999999999999966642 34
Q ss_pred ccCccCCCcccCCCCcccccccCCCCCeeeeeeeeeeecCCCcccccccccccccCcccccccceeeecccCcccccccc
Q 003221 481 LFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHV 560 (838)
Q Consensus 481 ~~p~~~lp~~~~s~~~~~q~~~~~~~~~~l~~v~rI~~~~~~w~~~~~~~~~~at~~~~~ps~~v~~~F~~~~~~~~~~~ 560 (838)
+.+...||||-.+++...-+....+....|...++++..+. | ++++-.+++-.|...-..+|+........
T Consensus 395 ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~q-- 465 (788)
T KOG2109|consen 395 LSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKANQ-- 465 (788)
T ss_pred cccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccCc--
Confidence 45556789998888877766667677778888777765532 1 22222334445655556777766332111
Q ss_pred ccccCCcccEEEEcCCc-eEEEEecccCCCCCCCCC-CCCcccCccccccCCc-eeEeeeccccceeeccCCCCcccccc
Q 003221 561 NSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEFI 637 (838)
Q Consensus 561 ~~~~~~~~~LlV~s~~G-~l~~Y~L~p~~g~e~~~~-~~~~~~~~~~~~~~~~-~~~~ve~~~~w~v~r~~~~~e~~~~~ 637 (838)
..++.+..|||+.|.| .++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-.|+|++++
T Consensus 466 -~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r- 542 (788)
T KOG2109|consen 466 -GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR- 542 (788)
T ss_pred -cchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC-
Confidence 2345588999999999 999999999998866554 33333222 3445667 9999999999999999999999997
Q ss_pred cccccCCCCceeeeecCCcCCcCCCccccccCcccccccccccCCCCccccceeEeeeeeEEeccCCccccccceeEEEE
Q 003221 638 SEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFK 717 (838)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~ae~q~~~~~~piw~~~~~~f~~ 717 (838)
+ ....|.+....+... .-... ..+...+.-+.+|-|+-+||+++|.. +|||+|.+ .||-
T Consensus 543 -G-----~TsaKv~~~afs~ds------------rw~A~-~t~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhr 601 (788)
T KOG2109|consen 543 -G-----STSAKVVSTAFSEDS------------RWLAI-TTNHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHR 601 (788)
T ss_pred -C-----CccceeeeeEeecch------------hhhhh-hhcCCceeeeeeccccccccceecCC-chhccchh-hhcc
Confidence 2 222344444333211 00000 01225577889999999999999999 99999999 9999
Q ss_pred cCCccc------cCCCCceeEEeeeeeeeEEEeccccccccccccccccccCcCCcccccCCCCCC
Q 003221 718 MDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEEKRPLSPS 777 (838)
Q Consensus 718 ~~~~~~------~~~~~~e~e~e~~~~~~~~~~~k~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (838)
|...+. +...++|.||+++.++++|+|+|||||+++ +...+.| +++..++++
T Consensus 602 sagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-----~tS~rsr---~~~~~qp~s 659 (788)
T KOG2109|consen 602 SAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-----KTSGRSR---VGPFPQPLS 659 (788)
T ss_pred ccCCCccccccccCCCCccceecccccccccccccccCCccc-----ccCcccc---ccCCCCCcc
Confidence 998443 233677999999999999999999999999 5566666 445444433
No 2
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=5.1e-53 Score=447.10 Aligned_cols=239 Identities=47% Similarity=0.751 Sum_probs=205.5
Q ss_pred CCCeeeeeeeeeeecC-CCcccccccccccccC-cccccccceeeecccCccccccccccc-cCCcccEEEEcCCceEEE
Q 003221 505 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ 581 (838)
Q Consensus 505 ~~~~~l~~v~rI~~~~-~~w~~~~~~~~~~at~-~~~~ps~~v~~~F~~~~~~~~~~~~~~-~~~~~~LlV~s~~G~l~~ 581 (838)
|+|++|++|+|||+++ +||+|++++++++++| +.+.+++++++.||++......+.... ...+++|||++|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 6799999999999998 8999999999999998 889999999999999866555544433 688999999999999999
Q ss_pred EecccCCCCCCCCCCCCcccCccccccCCceeEeeeccccceeeccCCCCcccc-cccccccCCCCceeeeecCCcCCcC
Q 003221 582 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCEDN 660 (838)
Q Consensus 582 Y~L~p~~g~e~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~w~v~r~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (838)
|+|+|+.+++...++++.+++....++|++|||+|||+|||||||+.+|+||++ +++++..++.....++.+..++++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 159 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRK- 159 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhcccccccc-
Confidence 999999999998888898888866667789999999999999999999999999 777878888766544444444322
Q ss_pred CCccccccCcccccccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCCccc-----cCCCC--ceeE
Q 003221 661 YGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEFE 732 (838)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~ae~q~~~~~-~piw~~~~~~f~~~~~~~~-----~~~~~--~e~e 732 (838)
+....+++.+.+.+. +++++|++||||||||||||+++ .||||||||+||+|.++.. ++..+ ||||
T Consensus 160 -~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~E 233 (251)
T PF12490_consen 160 -GNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIE 233 (251)
T ss_pred -cCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCcee
Confidence 556667766566665 78999999999999999999999 6999999999999998552 44566 9999
Q ss_pred EeeeeeeeEEEecccccc
Q 003221 733 IEKVSVHEVEIKRKELLP 750 (838)
Q Consensus 733 ~e~~~~~~~~~~~k~l~p 750 (838)
|||||+|+||+|||||||
T Consensus 234 IE~~~~~~ve~r~k~l~p 251 (251)
T PF12490_consen 234 IEKIPTREVEIRRKDLLP 251 (251)
T ss_pred eccccccceeeeccccCC
Confidence 999999999999999998
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=5e-48 Score=411.68 Aligned_cols=325 Identities=27% Similarity=0.442 Sum_probs=278.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
++.+..+.+.+|++ + ..+|.+|..+|+++|.+++.++ ..+...+.+..++|| |.++ |
T Consensus 2 ~~~~~ti~~~~~Nq----d---~~~lsvGs~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmL-----------FSSS--L 58 (391)
T KOG2110|consen 2 NGKKPTINFIGFNQ----D---STLLSVGSKDGYKIFSCSPFEK---CFSKDTEGVSIVEML-----------FSSS--L 58 (391)
T ss_pred CCCCcceeeeeecc----c---eeEEEccCCCceeEEecCchHH---hhcccCCCeEEEEee-----------cccc--e
Confidence 45678899999998 4 5799999999999999988554 445555789999999 9888 9
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEeCCe
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQ 212 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l~~~ 212 (838)
||+|..+ .|++++++++|.+..+|.+.|+++|++|++|+++|+|++.++
T Consensus 59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~ 107 (391)
T KOG2110|consen 59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES 107 (391)
T ss_pred eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence 9987642 258999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeeEEeec-CCcccCCCCccccccccceeEEcc----cEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 213 IYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 213 I~IwD~~t~e~l~tL~t~-p~p~~~~~~~~~~~~g~g~~Alsp----r~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
|||||+++|+.++++.+. |+| .|.+|+++ .||||+++
T Consensus 108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s------------------------- 149 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGS------------------------- 149 (391)
T ss_pred EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCC-------------------------
Confidence 999999999999999975 675 56788876 58888752
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
...|.|+|||+.+.+.+..|.+
T Consensus 150 ----------------------------------------------------------~t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 150 ----------------------------------------------------------TTSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred ----------------------------------------------------------CCCceEEEEEcccceeeeEEEe
Confidence 1257899999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
|.++|.||+|+|+|++|||||++||+||||.+.. | +++|+||||...+.|++|+|+||+++|+
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------c----------cEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999999999999999999999999999999943 5 6999999999988999999999999999
Q ss_pred EEeCCCeEEEEecCCCCCccccccCCCCCCCCcccCccCCCcccCCCCcccccccCCCCCeeeeeeeeeeecCCCccccc
Q 003221 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV 527 (838)
Q Consensus 448 s~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~~~lp~~~~s~~~~~q~~~~~~~~~~l~~v~rI~~~~~~w~~~~ 527 (838)
++|+.+|||||+|+...... ...|.+ ..+|.+.+
T Consensus 235 ~sS~TeTVHiFKL~~~~~~~----------------------------------~~~p~~------------~~~~~~~~ 268 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNNP----------------------------------PESPTA------------GTSWFGKV 268 (391)
T ss_pred EecCCCeEEEEEecccccCC----------------------------------CCCCCC------------CCcccchh
Confidence 99999999999998643100 000111 24688888
Q ss_pred ccccccccCcccccccceeeecccCcc--ccccccc--------cccCCcccEEEEcCCceEEEEecccCCCCCCCCCC
Q 003221 528 SNASASSMGKVFVPSGAVAAVFHNSIA--HSSQHVN--------SRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG 596 (838)
Q Consensus 528 ~~~~~~at~~~~~ps~~v~~~F~~~~~--~~~~~~~--------~~~~~~~~LlV~s~~G~l~~Y~L~p~~g~e~~~~~ 596 (838)
++++.+ |+|++ |+.+++++|. ++++++. .++++.++++|++-||++|.|+|+|++||||.+..
T Consensus 269 sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 269 SKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred hhhhhh-----hcchh-hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 886555 99987 9999999997 5566655 35688999999999999999999999999998864
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=339.60 Aligned_cols=315 Identities=25% Similarity=0.317 Sum_probs=254.2
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEee--eccCcEEEEEEecCCCCCCCCCCcccCCcEEEE
Q 003221 58 QVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLV 135 (838)
Q Consensus 58 ~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells--~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLav 135 (838)
+.+-+.|+| | ..++++|.++||+||++++.. +..+ .+++.+..++|| |+.+ +||+
T Consensus 7 ~~lsvs~NQ----D---~ScFava~~~Gfriyn~~P~k---e~~~r~~~~~G~~~veML-----------fR~N--~laL 63 (346)
T KOG2111|consen 7 KTLSVSFNQ----D---HSCFAVATDTGFRIYNCDPFK---ESASRQFIDGGFKIVEML-----------FRSN--YLAL 63 (346)
T ss_pred ceeEEEEcc----C---CceEEEEecCceEEEecCchh---hhhhhccccCchhhhhHh-----------hhhc--eEEE
Confidence 455589999 4 469999999999999998843 3332 345568899999 9988 9999
Q ss_pred EECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEeCCeEEE
Q 003221 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYC 215 (838)
Q Consensus 136 V~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l~~~I~I 215 (838)
|.|++ ++.|+|++|.|||.....++.++.|.++|.+|+++++.|+|.++++|++
T Consensus 64 VGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~V 117 (346)
T KOG2111|consen 64 VGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYV 117 (346)
T ss_pred ecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEE
Confidence 87531 2357899999999999999999999999999999999999999999999
Q ss_pred EECC-CCceeeEEeecCCcccCCCCccccccccceeEEcc----cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCC
Q 003221 216 FDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (838)
Q Consensus 216 wD~~-t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp----r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~ 290 (838)
|... +.+.++.+.+.++| .|.|++.+ .+||||+
T Consensus 118 ytF~~n~k~l~~~et~~NP-------------kGlC~~~~~~~k~~LafPg----------------------------- 155 (346)
T KOG2111|consen 118 YTFPDNPKLLHVIETRSNP-------------KGLCSLCPTSNKSLLAFPG----------------------------- 155 (346)
T ss_pred EEcCCChhheeeeecccCC-------------CceEeecCCCCceEEEcCC-----------------------------
Confidence 9988 78889999998887 45677644 3444433
Q ss_pred CcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE--EEEeccC
Q 003221 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAH 368 (838)
Q Consensus 291 gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~--v~~~~aH 368 (838)
...|.|+|-|+...+. ...+.||
T Consensus 156 -------------------------------------------------------~k~GqvQi~dL~~~~~~~p~~I~AH 180 (346)
T KOG2111|consen 156 -------------------------------------------------------FKTGQVQIVDLASTKPNAPSIINAH 180 (346)
T ss_pred -------------------------------------------------------CccceEEEEEhhhcCcCCceEEEcc
Confidence 2347899999887655 4789999
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
.++|+|++++-+|++|||||.+||.|||||..+ | .++++||||..+|.|++|+||||++|||+
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTLIRIFDTED-------G----------TLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------C----------cEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 999999999999999999999999999999975 5 59999999999999999999999999999
Q ss_pred EeCCCeEEEEecCCCCCccccccCCCCCCCCcccC-ccCCCcccCCCCcccccccCCCCCeeeeeeeeeeecCCCccccc
Q 003221 449 VSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP-VLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV 527 (838)
Q Consensus 449 ~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p-~~~lp~~~~s~~~~~q~~~~~~~~~~l~~v~rI~~~~~~w~~~~ 527 (838)
+|++||+|||.|.... .+.+.|+ .++. ...||.|+.|+|+++|+.++..++
T Consensus 244 sSdKgTlHiF~l~~~~--~~~~~~S------Sl~~~~~~lpky~~S~wS~~~f~l~~~~~-------------------- 295 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTE--NTEDESS------SLSFKRLVLPKYFSSEWSFAKFQLPQGTQ-------------------- 295 (346)
T ss_pred EcCCCeEEEEEeecCC--CCccccc------cccccccccchhcccceeEEEEEccCCCc--------------------
Confidence 9999999999997643 1222332 1222 236899999999999976663222
Q ss_pred ccccccccCcccccccceeeecccCccccccccccccCCcccEEEEcCCceEEEEecccCCCCCCCC
Q 003221 528 SNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSD 594 (838)
Q Consensus 528 ~~~~~~at~~~~~ps~~v~~~F~~~~~~~~~~~~~~~~~~~~LlV~s~~G~l~~Y~L~p~~g~e~~~ 594 (838)
+..-|-+. ...+++...||..+.|.++|.+||||..
T Consensus 296 -----------------~~~~fg~~--------------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~ 331 (346)
T KOG2111|consen 296 -----------------CIIAFGSE--------------TNTVIAICADGSYYKFKFDPKNGGESSR 331 (346)
T ss_pred -----------------EEEEecCC--------------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence 23333333 1358888999999999999999999953
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.9e-23 Score=220.34 Aligned_cols=315 Identities=15% Similarity=0.161 Sum_probs=217.6
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..++|-+.|+-+.|-- + +..|+.|..+ ++|+||++ +..-..++.+|..+|.+|.+.|++ +
T Consensus 110 S~~GH~e~Vl~~~fsp----~---g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDg-----------k 170 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP----T---GSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDG-----------K 170 (480)
T ss_pred ccCCCCCcEEEEEecC----C---CceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCc-----------c
Confidence 4577899999999954 2 5677777765 69999995 455567889999999999999974 2
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEE-EEEe-CCCcEEEEEeCC-----
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-HVLR-FRSSVCMVRCSP----- 202 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V-~tL~-f~s~V~sV~~s~----- 202 (838)
.||. |+. .++|++||-++|+++ ..|. +.-.|.++++.|
T Consensus 171 --~iAS-----------------------G~~----------dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 171 --KIAS-----------------------GSK----------DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred --hhhc-----------------------ccc----------CCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence 4443 122 378999999999765 4554 445899999965
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCC---CceeecC--CCCCC
Q 003221 203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN---TLLLSNS--GRLSP 274 (838)
Q Consensus 203 --~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~---~~~l~~~--G~vs~ 274 (838)
++||.+. ++.|+|||+.-+++++++..|.++ +..+..|..=|-|+++ .+.+|+. |.. .
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-------------VTCvrwGG~gliySgS~DrtIkvw~a~dG~~-~ 281 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-------------VTCVRWGGEGLIYSGSQDRTIKVWRALDGKL-C 281 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccc-------------eEEEEEcCCceEEecCCCceEEEEEccchhH-H
Confidence 3677665 568999999999999999988886 3445566433334443 4667764 322 0
Q ss_pred cccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccc---------------ccccccccccCCCCCCCCccCCCcccccc
Q 003221 275 QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS---------------KTLSKYCQELLPDGSSSPVSPNSVWKVGR 339 (838)
Q Consensus 275 q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~---------------ktls~y~~~~~p~gs~s~~s~n~~~k~~~ 339 (838)
..|.. -+.-+...|...--.|-.|.. +.+.+|-.- +++ .+.+
T Consensus 282 r~lkG----------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~-~~~---------~~er--- 338 (480)
T KOG0271|consen 282 RELKG----------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV-LKD---------SGER--- 338 (480)
T ss_pred Hhhcc----------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh-hcc---------Ccce---
Confidence 11110 001111111111111111111 223333211 010 0001
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 340 HAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 340 ~~~~~g~~~G~V~VwDl~-s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
+ ++++.|+++.+|+-. +.+.+..+.+|..-|+.+.|||||+++|+||-| ..||+||-.+ |
T Consensus 339 l--VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD-kSVkLW~g~t-------G--------- 399 (480)
T KOG0271|consen 339 L--VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD-KSVKLWDGRT-------G--------- 399 (480)
T ss_pred e--EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc-cceeeeeCCC-------c---------
Confidence 1 157789999999965 456888999999999999999999999999995 5699999864 4
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCC
Q 003221 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (838)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~ 478 (838)
+.+..| ||+ -+.|+-|+||.|++.|+++|.|.|++||++...+-..++.+|...|-+
T Consensus 400 -k~lasf-RGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 400 -KFLASF-RGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred -chhhhh-hhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 466676 674 457999999999999999999999999999999988888888654433
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=205.87 Aligned_cols=270 Identities=17% Similarity=0.202 Sum_probs=187.3
Q ss_pred eEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCC-C-------CCcccC-CcEEEEEECCCCCcCCC
Q 003221 76 QVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDG-C-------EGFRKL-HPFLLVVAGEDTNTLAP 146 (838)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~-~-------d~F~~s-rpLLavV~~d~t~~~~~ 146 (838)
.+...||+.+||+|.. .+|.|..++...|+.|+.|++.|+...-.. . |.-..+ .|+.-+.+.
T Consensus 12 iLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h-------- 82 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH-------- 82 (311)
T ss_pred EEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc--------
Confidence 4556789999999999 579999999999999999999987532111 1 111111 132211110
Q ss_pred CCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCce
Q 003221 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLEN 223 (838)
Q Consensus 147 ~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~ 223 (838)
.++....|...+|.|.+.++ .+++++|||+|.-++-+.+++.++|..|.++++ .|.++. .+.|++||+.+-.+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs----eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS----EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CCceEEEEEeecCeEEEecC----CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 11112233348888876444 479999999999888889999999999999986 566666 46899999997655
Q ss_pred eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhh
Q 003221 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (838)
Q Consensus 224 l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k 303 (838)
.+.+. |.+. .....+++ .++ |+.++
T Consensus 159 ~~~li--Pe~~----------~~i~sl~v-------~~d----------------------------gsml~-------- 183 (311)
T KOG0315|consen 159 THELI--PEDD----------TSIQSLTV-------MPD----------------------------GSMLA-------- 183 (311)
T ss_pred ccccC--CCCC----------cceeeEEE-------cCC----------------------------CcEEE--------
Confidence 43322 2210 00111222 110 11110
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC------cEEEEeccCCCCeEEEEE
Q 003221 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPISALCF 377 (838)
Q Consensus 304 ~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~------~~v~~~~aH~spIsaLaF 377 (838)
.+.+.|+..||++-+. ..+.+|++|.+.|....|
T Consensus 184 ----------------------------------------a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 184 ----------------------------------------AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred ----------------------------------------EecCCccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence 1345788999998753 367889999999999999
Q ss_pred CCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEEEeCCCeEE
Q 003221 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAIVSSKGTCH 456 (838)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~RG~t~a~I~sIaFSpDg~~Las~S~dGTVh 456 (838)
|||+++|||+|.| ++++||++.. ....++ ..|+ +..+++++||.||+||+++|+|+++|
T Consensus 224 SPd~k~lat~ssd-ktv~iwn~~~------------------~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 224 SPDVKYLATCSSD-KTVKIWNTDD------------------FFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred CCCCcEEEeecCC-ceEEEEecCC------------------ceeeEEEeecC-CceEEeeeeccCccEEEecCCCCcee
Confidence 9999999999995 5699999853 111122 1332 34799999999999999999999999
Q ss_pred EEecCCCCCccccccCC
Q 003221 457 VFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 457 Iw~l~~~gg~~~~~~H~ 473 (838)
+|+++..+.....++|-
T Consensus 284 lW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHH 300 (311)
T ss_pred ecccccCceeeecCCcc
Confidence 99999887777777773
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.89 E-value=1.4e-21 Score=225.28 Aligned_cols=228 Identities=20% Similarity=0.270 Sum_probs=170.1
Q ss_pred CeEEEEEecCc-EEEEEccCC------------------------------CceeEEeeeccCcEEEEEEecCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDA------------------------------SNFNELVSKRDGPVSFLQMQPFPVKDDGC 123 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~------------------------------g~v~ells~hdg~V~~l~~lP~p~~~~~~ 123 (838)
...|+.|..+. ++||.+.+. +...+.+-+|.|||..+.|.|+
T Consensus 390 ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd------- 462 (707)
T KOG0263|consen 390 SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD------- 462 (707)
T ss_pred cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-------
Confidence 56899999875 899998631 1223346678899999998875
Q ss_pred CCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCC
Q 003221 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP 202 (838)
Q Consensus 124 d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~ 202 (838)
+.+|+.++. +.+||+|++.+..++..++-+ .+|+.|+|+|
T Consensus 463 ------~rfLlScSE---------------------------------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 463 ------RRFLLSCSE---------------------------------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred ------ccceeeccC---------------------------------CcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 335544322 378999999999999888754 5999999999
Q ss_pred C--eEEEEeCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCC
Q 003221 203 R--IVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 203 ~--iLaV~l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~ 279 (838)
+ ++|.+..+ +-++|.....+.++.+.+|-+. .++++ |-++.
T Consensus 504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsD-------------V~cv~-------FHPNs---------------- 547 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD-------------VDCVS-------FHPNS---------------- 547 (707)
T ss_pred CceEEEecCCCceeeeeecccCCchhhhcccccc-------------cceEE-------ECCcc----------------
Confidence 7 77776654 5789987765544443333221 11222 22110
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
.++ ++|+.|.+|++||+.++
T Consensus 548 --------------------------------------------------------~Y~----aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 548 --------------------------------------------------------NYV----ATGSSDRTVRLWDVSTG 567 (707)
T ss_pred --------------------------------------------------------ccc----ccCCCCceEEEEEcCCC
Confidence 011 13567899999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 360 ~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
..+..|.+|++||.+|+|||+|++||+|+++|. |+|||+.. | ..+.+| +|+ .+.|++|.|
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~-------~----------~~v~~l-~~H-t~ti~SlsF 627 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN-------G----------SLVKQL-KGH-TGTIYSLSF 627 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC-------C----------cchhhh-hcc-cCceeEEEE
Confidence 999999999999999999999999999999775 99999953 3 244444 666 457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 440 SHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
|.||..||+++.|.+|++||+...-
T Consensus 628 S~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999999987543
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.2e-21 Score=210.76 Aligned_cols=258 Identities=16% Similarity=0.167 Sum_probs=197.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
-++.-.|..+.|-. + ...|++|..+| .+||++++ .+...+|.+|.+.|.++.|.|.- +.-
T Consensus 172 ~gd~rPis~~~fS~----d---s~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~-----------~~~ 232 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR----D---SKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVD-----------SDL 232 (459)
T ss_pred ccCCCcceeeEeec----C---CCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCC-----------Ccc
Confidence 34556677777755 3 46889998888 89999965 57788899999999999999841 111
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEE-
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAV- 207 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV- 207 (838)
-||.++ .+++|++|++.+-+.+..|+.+ ..|-.|+|+|. +|++
T Consensus 233 ~lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 233 NLATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred ceeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence 344422 2378999999998888888755 69999999885 6665
Q ss_pred EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 208 GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 208 ~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
+.+..=++||+.|.+.+....+|..+ +-.+ ||-.
T Consensus 280 sfD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~i-------af~~-------------------------- 313 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLLQEGHSKG-------------VFSI-------AFQP-------------------------- 313 (459)
T ss_pred ccccchhhcccccchhhHhhcccccc-------------ccee-------EecC--------------------------
Confidence 55678899999999887766676653 2223 3322
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
.|++++ +|+.|..-+|||+.+++.+..|.+
T Consensus 314 --DGSL~~------------------------------------------------tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 314 --DGSLAA------------------------------------------------TGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred --CCceee------------------------------------------------ccCccchhheeecccCcEEEEecc
Confidence 123332 234566678999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEE
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWI 446 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~L 446 (838)
|..+|..++|||+|..|||+|.|++ +||||+.-. ..+|..- + |...|..|.|+| .|++|
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r-----------------~~ly~ip-A-H~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMR-----------------SELYTIP-A-HSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCc-EEEeeeccc-----------------ccceecc-c-ccchhhheEecccCCeEE
Confidence 9999999999999999999999776 999999631 3566653 3 334699999999 79999
Q ss_pred EEEeCCCeEEEEecCCCCCccccccCCCCCCC
Q 003221 447 AIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (838)
Q Consensus 447 as~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~ 478 (838)
+++|-|+|++||.-........+.+|...+..
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccceEE
Confidence 99999999999998887778889999766544
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.3e-20 Score=202.44 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=198.2
Q ss_pred CCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCC
Q 003221 71 PSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (838)
Q Consensus 71 ~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~ 149 (838)
.+.+++.|+.|..+| |++||-...+...+.|.+|..++..|++.|--.... .| +||..+
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~-------~r-~las~s------------ 224 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP-------CR-RLASSS------------ 224 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC-------cc-ceeccc------------
Confidence 345688999999887 999998766677789999999999999998543221 12 444311
Q ss_pred CCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCC-CeEEEEe-CCeEEEEECCCCceeeE
Q 003221 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCFDALTLENKFS 226 (838)
Q Consensus 150 ~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~-~iLaV~l-~~~I~IwD~~t~e~l~t 226 (838)
.++.|+|||++.++++..+.-+ .+|.+|++-. .+|..+. +.+|++|++.++.+..+
T Consensus 225 ---------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 225 ---------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred ---------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHh
Confidence 2478999999999999888654 5999999985 4777766 55899999999999998
Q ss_pred EeecCCcccCCCCccccccccceeEEcccEE----EEeCCCceeecCCCCCCc----------ccCC-CCCCCCCCCCCC
Q 003221 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWL----AYASNTLLLSNSGRLSPQ----------NLTP-SGVSPSTSPGGS 291 (838)
Q Consensus 227 L~t~p~p~~~~~~~~~~~~g~g~~Alspr~L----Ays~~~~~l~~~G~vs~q----------~l~~-~~~s~stsps~g 291 (838)
|..|... .|.+|++..|. ||-.. |+.... .+.. ... ++.
T Consensus 284 lkGHahw-------------vN~lalsTdy~LRtgaf~~t-------~~~~~~~se~~~~Al~rY~~~~~~------~~e 337 (480)
T KOG0271|consen 284 LKGHAHW-------------VNHLALSTDYVLRTGAFDHT-------GRKPKSFSEEQKKALERYEAVLKD------SGE 337 (480)
T ss_pred hcccchh-------------eeeeeccchhhhhccccccc-------cccCCChHHHHHHHHHHHHHhhcc------Ccc
Confidence 8887663 56788775322 22210 110000 0000 000 000
Q ss_pred cceeeeehhhhhhhhcccc-----ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 292 SLVARYAMEHSKQFAAGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 292 slva~~A~ds~k~la~Gl~-----ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
.+|. ..-+-..-+..... ..++++-.. ++..+++++.++.+ +++.|..|++||-.+++.++.|+
T Consensus 338 rlVS-gsDd~tlflW~p~~~kkpi~rmtgHq~l------Vn~V~fSPd~r~IA----SaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 338 RLVS-GSDDFTLFLWNPFKSKKPITRMTGHQAL------VNHVSFSPDGRYIA----SASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred eeEE-ecCCceEEEecccccccchhhhhchhhh------eeeEEECCCccEEE----EeecccceeeeeCCCcchhhhhh
Confidence 0100 00000000000000 112222211 23345555566555 56789999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
+|-.+|.-++++.|.+||+++|.| ++++|||+..- ...+.| -|+ ...|+++.|||||+.+
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkD-sTLKvw~V~tk-----------------Kl~~DL-pGh-~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKD-STLKVWDVRTK-----------------KLKQDL-PGH-ADEVFAVDWSPDGQRV 466 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCC-ceEEEEEeeee-----------------eecccC-CCC-CceEEEEEecCCCcee
Confidence 999999999999999999999995 56999999641 233455 454 3479999999999999
Q ss_pred EEEeCCCeEEEEe
Q 003221 447 AIVSSKGTCHVFV 459 (838)
Q Consensus 447 as~S~dGTVhIw~ 459 (838)
|+|+.|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.84 E-value=6.6e-18 Score=171.46 Aligned_cols=275 Identities=20% Similarity=0.263 Sum_probs=190.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.++++.|.-+.|.. + ++.|++|.. +.+++||+.. +.....+..|..++..+.+.|+. .
T Consensus 6 ~~h~~~i~~~~~~~----~---~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-------------~ 64 (289)
T cd00200 6 KGHTGGVTCVAFSP----D---GKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG-------------T 64 (289)
T ss_pred cccCCCEEEEEEcC----C---CCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCC-------------C
Confidence 46788899888866 2 456777764 4599999964 44566677788889888888742 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCC--CeEEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~--~iLaV~ 208 (838)
+|++++. .+.|++||+.+++.+..+..+ ..|.++.+++ ++++++
T Consensus 65 ~l~~~~~---------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 111 (289)
T cd00200 65 YLASGSS---------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111 (289)
T ss_pred EEEEEcC---------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence 5544221 268999999998888877654 4899999988 477777
Q ss_pred e-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeC--CCceeecCCCCCCcccCCCCCC
Q 003221 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVS 283 (838)
Q Consensus 209 l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~--~~~~l~~~G~vs~q~l~~~~~s 283 (838)
. ++.|++||+.+++....+..+..+ ...+++.+ ++|+... ..+.+|+.....
T Consensus 112 ~~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------- 168 (289)
T cd00200 112 SRDKTIKVWDVETGKCLTTLRGHTDW-------------VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---------- 168 (289)
T ss_pred cCCCeEEEEECCCcEEEEEeccCCCc-------------EEEEEEcCcCCEEEEEcCCCcEEEEEccccc----------
Confidence 7 789999999988877776644432 33466665 5666554 345566641100
Q ss_pred CCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEE
Q 003221 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (838)
Q Consensus 284 ~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~ 363 (838)
.+.. +.. ..........++..+.+. .+..+|.|.+||+..++.+.
T Consensus 169 ---------~~~~----------------~~~------~~~~i~~~~~~~~~~~l~----~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 169 ---------CVAT----------------LTG------HTGEVNSVAFSPDGEKLL----SSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred ---------ccee----------------Eec------CccccceEEECCCcCEEE----EecCCCcEEEEECCCCceec
Confidence 0000 000 000001111111121121 23448999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
.+..|..+|.+++|+|++.++++++.+|. |++|++.. + ..+..+. + +...|.+++|++++
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~~ 273 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT-------G----------ECVQTLS-G-HTNSVTSLAWSPDG 273 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-------c----------eeEEEcc-c-cCCcEEEEEECCCC
Confidence 99999999999999999999999997676 99999853 2 3455554 3 34579999999999
Q ss_pred CEEEEEeCCCeEEEEe
Q 003221 444 QWIAIVSSKGTCHVFV 459 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~ 459 (838)
++|++++.||+++||+
T Consensus 274 ~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 274 KRLASGSADGTIRIWD 289 (289)
T ss_pred CEEEEecCCCeEEecC
Confidence 9999999999999996
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=6.6e-19 Score=201.59 Aligned_cols=288 Identities=17% Similarity=0.271 Sum_probs=193.7
Q ss_pred CCCcEEEEEEeeccCCC----------CCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCC
Q 003221 55 LKDQVTWAGFDRLEYGP----------SVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGC 123 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~----------~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~ 123 (838)
...++.|..--+.-+++ +..-++|++|..+| |.+|.+.+ -++...++-.+-++..+.+.-.+
T Consensus 247 k~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tG------ 319 (893)
T KOG0291|consen 247 KTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTG------ 319 (893)
T ss_pred hhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccC------
Confidence 44567777654322221 12357899999999 78999954 45777788888889888887432
Q ss_pred CCcccCCcEEEEEECC-------CCCc-CCCCCCCCCCCCcccCccCCCCCC--CCCCCCEEEEEECCCCeEEEEEe-CC
Q 003221 124 EGFRKLHPFLLVVAGE-------DTNT-LAPGQNRSHLGGVRDGMMDSQSGN--CVNSPTAVRFYSFQSHCYEHVLR-FR 192 (838)
Q Consensus 124 d~F~~srpLLavV~~d-------~t~~-~~~~~~~~~~~~~~~gs~d~~~~~--~~~~p~tV~IWDl~tg~~V~tL~-f~ 192 (838)
..||+-+.. ++.. .-...+++|...+..-...|.++. +-..+++|+|||.++|-|+.++. +.
T Consensus 320 -------DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt 392 (893)
T KOG0291|consen 320 -------DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT 392 (893)
T ss_pred -------CEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence 244442210 1111 112335566655522222211111 12346999999999999999995 56
Q ss_pred CcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecC
Q 003221 193 SSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNS 269 (838)
Q Consensus 193 s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~ 269 (838)
+.|.+|.|..+ +|..+++++|+.||+...++.+|+. .|.| +....+|+.|
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft-~P~p-----------~QfscvavD~--------------- 445 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT-SPEP-----------IQFSCVAVDP--------------- 445 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec-CCCc-----------eeeeEEEEcC---------------
Confidence 79999999764 6677889999999999998877754 3444 1123333321
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc
Q 003221 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (838)
Q Consensus 270 G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G 349 (838)
+|.-+.| | +...=
T Consensus 446 -------------------sGelV~A------------G------------------------------------~~d~F 458 (893)
T KOG0291|consen 446 -------------------SGELVCA------------G------------------------------------AQDSF 458 (893)
T ss_pred -------------------CCCEEEe------------e------------------------------------ccceE
Confidence 1111111 0 11123
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
.|.||++++|+.+-.+.+|.+||.+|+|+|+|.+|||+|.| ++||+||+... .| ..-+++-
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD-kTVRiW~if~s-----~~-----------~vEtl~i-- 519 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD-KTVRIWDIFSS-----SG-----------TVETLEI-- 519 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc-ceEEEEEeecc-----Cc-----------eeeeEee--
Confidence 69999999999999999999999999999999999999995 55999999531 12 2233321
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccc
Q 003221 430 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 430 t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
...+..++|+|||+.||+++.||.+.+|+++.....-.+.
T Consensus 520 -~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 520 -RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred -ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 2358999999999999999999999999998765544443
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=3.8e-20 Score=201.18 Aligned_cols=240 Identities=19% Similarity=0.161 Sum_probs=183.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
+.+|+++|.-+-|--.+ ....|++|.. +.+++|+++. .....-|.+|...|..++|.|++
T Consensus 213 l~gH~~~v~~~~fhP~~-----~~~~lat~s~Dgtvklw~~~~-e~~l~~l~gH~~RVs~VafHPsG------------- 273 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVD-----SDLNLATASADGTVKLWKLSQ-ETPLQDLEGHLARVSRVAFHPSG------------- 273 (459)
T ss_pred EeccccceeeEEEccCC-----CccceeeeccCCceeeeccCC-CcchhhhhcchhhheeeeecCCC-------------
Confidence 57789999999886532 1345555555 5599999964 34445567788899999999864
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEeCCC--eEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPR--IVAV 207 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s-~V~sV~~s~~--iLaV 207 (838)
.+|+..+ + +.+-++||+.+++++...+-++ .|++++|+++ +++.
T Consensus 274 ~~L~Tas-----------------------f----------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 274 KFLGTAS-----------------------F----------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred ceeeecc-----------------------c----------ccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 2555422 2 3789999999999887776654 9999999987 5555
Q ss_pred E-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 G-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
| ++..-+|||++|+.++..|..|..+ .-.++ |+++
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~-------------I~~V~-------fsPN------------------------ 356 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKE-------------ILSVA-------FSPN------------------------ 356 (459)
T ss_pred cCccchhheeecccCcEEEEecccccc-------------eeeEe-------ECCC------------------------
Confidence 4 4556799999999999988887664 11222 2221
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
|..+| +++.|++++|||+...+.+.++.
T Consensus 357 ----Gy~lA------------------------------------------------Tgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 357 ----GYHLA------------------------------------------------TGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred ----ceEEe------------------------------------------------ecCCCCcEEEeeecccccceecc
Confidence 11111 35678999999999999999999
Q ss_pred cCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 367 AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 367 aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
||++-|+.++|+| .|.+|+|||.|++ +|||.... + .++..| .|+. ..|.++..|+||++
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~-------~----------~~~ksL-aGHe-~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRT-------W----------SPLKSL-AGHE-GKVISLDISPDSQA 444 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcc-eeeecCCC-------c----------ccchhh-cCCc-cceEEEEeccCCce
Confidence 9999999999999 7999999999765 99998742 1 466666 5654 47999999999999
Q ss_pred EEEEeCCCeEEEEe
Q 003221 446 IAIVSSKGTCHVFV 459 (838)
Q Consensus 446 Las~S~dGTVhIw~ 459 (838)
|++++.|.|+++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-18 Score=180.80 Aligned_cols=251 Identities=14% Similarity=0.187 Sum_probs=181.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC----CceeEEeeeccCcEEEEEEecCCCCCCCCCCc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~----g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F 126 (838)
.+++++.|+-...-. . .+.+|+.+..+ .+-+|++... |...+.+.+|...|.-+.+.+++
T Consensus 11 l~gh~d~Vt~la~~~-----~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--------- 75 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKI-----K-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--------- 75 (315)
T ss_pred ecCCCceEEEEEeec-----C-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC---------
Confidence 467888887665533 1 24566666665 5899999543 44456677777778877777643
Q ss_pred ccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--
Q 003221 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-- 203 (838)
Q Consensus 127 ~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~-- 203 (838)
+ + |+ .|+|| +++|+||+.+|+..+.+..+ ..|++|+++++
T Consensus 76 --~--~-al----------------------S~swD----------~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 76 --N--F-AL----------------------SASWD----------GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR 118 (315)
T ss_pred --c--e-EE----------------------ecccc----------ceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence 1 1 22 14566 89999999999888888655 58999999885
Q ss_pred eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCC
Q 003221 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
.++.+. +.+|.+||+.+ ++.+++......+ -...+ -|.++..
T Consensus 119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~-----------WVscv-------rfsP~~~------------------ 161 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE-----------WVSCV-------RFSPNES------------------ 161 (315)
T ss_pred eeecCCCcceeeeeeecc-cEEEEEecCCCcC-----------cEEEE-------EEcCCCC------------------
Confidence 455544 67899999885 4667765432100 01122 2222100
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v 362 (838)
... ...++.|++|+|||+.+.+..
T Consensus 162 --------~p~------------------------------------------------Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 162 --------NPI------------------------------------------------IVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred --------CcE------------------------------------------------EEEccCCceEEEEccCCcchh
Confidence 000 013467899999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003221 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (838)
Q Consensus 363 ~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 442 (838)
..|.+|++.+++++|||||.++|+|+.+|. +.+||+.. + +++|.|.. ...|.+++|+|.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~-------~----------k~lysl~a---~~~v~sl~fspn 244 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNE-------G----------KNLYSLEA---FDIVNSLCFSPN 244 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCce-EEEEEccC-------C----------ceeEeccC---CCeEeeEEecCC
Confidence 999999999999999999999999999775 89999964 3 68999853 347999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
--|||.+...+ |+||++++......+
T Consensus 245 rywL~~at~~s-IkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 245 RYWLCAATATS-IKIWDLESKAVVEEL 270 (315)
T ss_pred ceeEeeccCCc-eEEEeccchhhhhhc
Confidence 99999998876 999999987655444
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.81 E-value=7.4e-18 Score=185.36 Aligned_cols=270 Identities=20% Similarity=0.268 Sum_probs=194.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
.+.+|++|..+| ++||+. .|++...|..|.|||..|++..++ .+|+. ++
T Consensus 246 ~G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~G-------------~yilS--~~------------- 295 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNKKG-------------TYILS--GG------------- 295 (524)
T ss_pred CCCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcCCC-------------CEEEe--cc-------------
Confidence 378999999998 799998 367888899999999999998532 35543 11
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE-EEEEeCC-CeEEE-EeCCeEEEEECCCCceeeEEee
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V-~sV~~s~-~iLaV-~l~~~I~IwD~~t~e~l~tL~t 229 (838)
.+++..+||..+|+....+.|++.. ++|.+-. +-+++ +.+..|+++.+..-....++..
T Consensus 296 ------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 296 ------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred ------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 2478999999999999999999877 8898854 45555 4466899999988778888888
Q ss_pred cCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
|.++ .+.+-+.| ..||.+++ ++.+|+.|.-.-++ .+-++ .|++
T Consensus 358 H~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~---------------~l~~H-----skei 404 (524)
T KOG0273|consen 358 HHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH---------------DLQAH-----SKEI 404 (524)
T ss_pred ccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCcchh---------------hhhhh-----ccce
Confidence 7775 45666665 67887665 46789864321000 00000 0000
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLA 385 (838)
|.-.-.|.+ +...++ +.... -+.+..+++|++||+..+.++..|..|+.||.+|+|+|+|++||
T Consensus 405 ----------~t~~wsp~g---~v~~n~-~~~~~--l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 405 ----------YTIKWSPTG---PVTSNP-NMNLM--LASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred ----------eeEeecCCC---CccCCC-cCCce--EEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 110011211 111111 01111 12467899999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 386 TAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
+++.||. ++||++.. | .+|+-.+|. ..|..|+|+.+|..|+++-.||.+.|-++.
T Consensus 469 sGs~dg~-V~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 469 SGSLDGC-VHIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCCCCe-eEeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999776 99999964 3 455555553 469999999999999999999999988763
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.80 E-value=3e-17 Score=172.24 Aligned_cols=265 Identities=13% Similarity=0.093 Sum_probs=190.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
.-+|..+|.-..|-. | .+.|+.+.++| +-|||.-. .+....+..+..+|-..++.|.+
T Consensus 51 LkGH~~Ki~~~~ws~----D---sr~ivSaSqDGklIvWDs~T-tnK~haipl~s~WVMtCA~sPSg------------- 109 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWST----D---SRRIVSASQDGKLIVWDSFT-TNKVHAIPLPSSWVMTCAYSPSG------------- 109 (343)
T ss_pred ecccccceeeeEecC----C---cCeEEeeccCCeEEEEEccc-ccceeEEecCceeEEEEEECCCC-------------
Confidence 355666676655544 3 56777777877 79999865 45556777788899999999853
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC--e----EEEEEe-CCCcEEEEEeCCC
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--C----YEHVLR-FRSSVCMVRCSPR 203 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg--~----~V~tL~-f~s~V~sV~~s~~ 203 (838)
.++| +| +. ++...||++.+. + ..++|. +.+-+.+.+|-.+
T Consensus 110 ~~VA--cG---------------------GL----------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 110 NFVA--CG---------------------GL----------DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred CeEE--ec---------------------Cc----------CceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence 2544 22 11 378999999865 2 233443 4567888888655
Q ss_pred --eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCC
Q 003221 204 --IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (838)
Q Consensus 204 --iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~ 281 (838)
+|..+.+.+..+||+.+++....+..|.-. .|+| +.+++
T Consensus 157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD---------------V~sl-----sl~p~------------------- 197 (343)
T KOG0286|consen 157 NHILTGSGDMTCALWDIETGQQTQVFHGHTGD---------------VMSL-----SLSPS------------------- 197 (343)
T ss_pred CceEecCCCceEEEEEcccceEEEEecCCccc---------------EEEE-----ecCCC-------------------
Confidence 566666778999999999988777665431 2333 11110
Q ss_pred CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE
Q 003221 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (838)
Q Consensus 282 ~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~ 361 (838)
++ ..+.++.-|+..+|||+.++..
T Consensus 198 --------~~------------------------------------------------ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 198 --------DG------------------------------------------------NTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred --------CC------------------------------------------------CeEEecccccceeeeeccCcce
Confidence 00 0112456688999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
+.+|.+|.+-|++++|-|+|.-+||+|.|++ +|+||+... +.+..+..-.....|++++||.
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD-----------------QELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC-----------------cEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999876 999999642 3444443333455799999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccC
Q 003221 442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (838)
Q Consensus 442 Dg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p 483 (838)
.|++|.+|-.|.+++|||.-...-.-.+.+|-..+.+..++|
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 999999999999999999765554556788865555544444
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.78 E-value=1.6e-16 Score=176.73 Aligned_cols=329 Identities=12% Similarity=0.147 Sum_probs=201.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEee---eccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS---KRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells---~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
.+|..=|..++|.- | ..++..+|.++.+-|||=.. ++..-.|. .|.|.|..|.|+|+. +
T Consensus 187 r~HskFV~~VRysP----D--G~~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs-----------~ 248 (603)
T KOG0318|consen 187 REHSKFVNCVRYSP----D--GSRFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDS-----------T 248 (603)
T ss_pred cccccceeeEEECC----C--CCeEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCC-----------c
Confidence 33444577777754 3 24677777777899999854 44443444 688999999999973 1
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE----EEEEe-CCCe
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV----CMVRC-SPRI 204 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V----~sV~~-s~~i 204 (838)
.++.+++| .+++|||..+++++.++.+.+.| ..+-+ +..+
T Consensus 249 --~~~T~SaD---------------------------------kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 249 --QFLTVSAD---------------------------------KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred --eEEEecCC---------------------------------ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 35555542 78999999999999999988765 33333 3458
Q ss_pred EEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcccCC-
Q 003221 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP- 279 (838)
Q Consensus 205 LaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~l~~- 279 (838)
+.|++.+.|-++++.+++.++++..|... ...+++++ .+|-.++. .+.-|+.|.-....|.+
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence 88999999999999999988888776542 44566665 44433332 23346654321111110
Q ss_pred CCC----CCCCCCCCCcceeeeehhhh-hhh--h-cccc----------------------------c---cccccccc-
Q 003221 280 SGV----SPSTSPGGSSLVARYAMEHS-KQF--A-AGLS----------------------------K---TLSKYCQE- 319 (838)
Q Consensus 280 ~~~----s~stsps~gslva~~A~ds~-k~l--a-~Gl~----------------------------k---tls~y~~~- 319 (838)
... .... ...+.+. .+.+|.. +.. . .|.. + -|+.....
T Consensus 361 ~h~nqI~~~~~-~~~~~~~-t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~ 438 (603)
T KOG0318|consen 361 GHTNQIKGMAA-SESGELF-TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS 438 (603)
T ss_pred cccceEEEEee-cCCCcEE-EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence 000 0000 0001100 0000000 000 0 0000 0 00000000
Q ss_pred cCCCCC-CCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEE
Q 003221 320 LLPDGS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 396 (838)
Q Consensus 320 ~~p~gs-~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 396 (838)
..|-+- ......+++.... +-|.+||.|+||.+..+. ....+..|..+|++++|||||++||.++..+. +-+
T Consensus 439 ~~~~~y~~s~vAv~~~~~~v----aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~ 513 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDGSEV----AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVL 513 (603)
T ss_pred eeccccccceEEEcCCCCEE----EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEE
Confidence 000000 0011111111111 146789999999998754 34567789999999999999999999999665 789
Q ss_pred EecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc-ccC
Q 003221 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTL 472 (838)
Q Consensus 397 wdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~-~~H 472 (838)
||+... ....-+.++|.++|.+|+||||++.||+||.|-+|+||.++.......+ .+|
T Consensus 514 yd~~s~------------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 514 YDVASR------------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred EEcccC------------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999642 2233345667889999999999999999999999999999887665544 344
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.78 E-value=2.4e-17 Score=173.48 Aligned_cols=268 Identities=15% Similarity=0.106 Sum_probs=194.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEE-EecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLL-GYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~l-G~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
.++++..|.-+.|+- + +.+|++ |+|..|-+|++...-+-.-.+.+|.|.|..|.+.++. +
T Consensus 43 l~gh~geI~~~~F~P----~---gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-----------s- 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP----D---GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-----------S- 103 (338)
T ss_pred cCCCcceEEEEEECC----C---CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-----------C-
Confidence 678999999999976 2 345555 5566799999854333345778999999999998652 2
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE-EEEEeCC---CeEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP---RIVA 206 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V-~sV~~s~---~iLa 206 (838)
.|+. ++ ++++|+.||+++|+.+..++.+..+ .++..++ .+|.
T Consensus 104 -~i~S-~g--------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 104 -HILS-CG--------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred -EEEE-ec--------------------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEE
Confidence 3322 21 2489999999999999988877644 4444333 3555
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
.+. +.++++||+++-+..+++. ++ +...|++ |...
T Consensus 150 SgsdD~t~kl~D~R~k~~~~t~~---~k-------------yqltAv~-----f~d~----------------------- 185 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAIKTFE---NK-------------YQLTAVG-----FKDT----------------------- 185 (338)
T ss_pred ecCCCceEEEEeecccchhhccc---cc-------------eeEEEEE-----eccc-----------------------
Confidence 555 4589999999776655442 22 3334431 1110
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
+-++. .|.-|+.|++||+..+....++
T Consensus 186 ----------------s~qv~-------------------------------------sggIdn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 186 ----------------SDQVI-------------------------------------SGGIDNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred ----------------cccee-------------------------------------eccccCceeeeccccCcceEEe
Confidence 00000 1345788999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS 443 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a--~I~sIaFSpDg 443 (838)
.+|..+|..|..+|+|.+|.+-+.|. ++++||+.|- .+..+++..+..+.++- ....++|||++
T Consensus 213 sGh~DtIt~lsls~~gs~llsnsMd~-tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYGSFLLSNSMDN-TVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred ecccCceeeEEeccCCCccccccccc-eEEEEEeccc-------------CCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999999999999999965 5999999873 22335566665554543 35678999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccC
Q 003221 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p 483 (838)
+++.++|.|..|+||+....+....+.+|...+....++|
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 9999999999999999988888888889977766655555
No 18
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.77 E-value=1.5e-16 Score=194.47 Aligned_cols=226 Identities=15% Similarity=0.223 Sum_probs=159.2
Q ss_pred eEEEEEe-cCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 76 QVLLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 76 ~vL~lG~-~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
..|++|. ++.++|||+. .+.....+..|.+.|..+++.|. ...+|+..+
T Consensus 546 ~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~------------~~~~L~Sgs----------------- 595 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSA------------DPTLLASGS----------------- 595 (793)
T ss_pred CEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCC------------CCCEEEEEc-----------------
Confidence 3455555 5559999996 45666677889999999999862 112554321
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCC---CeEEEEe-CCeEEEEECCCCce-eeEEee
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN-KFSVLT 229 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~---~iLaV~l-~~~I~IwD~~t~e~-l~tL~t 229 (838)
.+++|++||+++++.+.++.....|.++.+++ .+|++|. ++.|++||+++.+. +.++..
T Consensus 596 ----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 596 ----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred ----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 13789999999999999998888999999853 4677665 56899999987652 334433
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
|..+ + .+++|..... +
T Consensus 660 h~~~----------------V----~~v~f~~~~~----------------------------l---------------- 675 (793)
T PLN00181 660 HSKT----------------V----SYVRFVDSST----------------------------L---------------- 675 (793)
T ss_pred CCCC----------------E----EEEEEeCCCE----------------------------E----------------
Confidence 3321 1 2233321100 0
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCCE
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGTL 383 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s------~~~v~~~~aH~spIsaLaFSPdGtl 383 (838)
.+++.||+|+|||+.. .+.+..|.+|...+.+++|+|+|.+
T Consensus 676 ---------------------------------vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 676 ---------------------------------VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred ---------------------------------EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 0235689999999974 3567899999999999999999999
Q ss_pred EEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe---------cccccccEEEEEEccCCCEEEEEeCCCe
Q 003221 384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---------RGITSATIQDICFSHYSQWIAIVSSKGT 454 (838)
Q Consensus 384 LATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~---------RG~t~a~I~sIaFSpDg~~Las~S~dGT 454 (838)
||+|+.||+ |+||+.... . ....+.+. -..+...|.+++|+||++.|++++.+|+
T Consensus 723 lasgs~D~~-v~iw~~~~~-------~--------~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 723 IATGSETNE-VFVYHKAFP-------M--------PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred EEEEeCCCE-EEEEECCCC-------C--------ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 999999775 999997421 0 00111110 0112236999999999999999999999
Q ss_pred EEEEec
Q 003221 455 CHVFVL 460 (838)
Q Consensus 455 VhIw~l 460 (838)
|+||++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999986
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=174.99 Aligned_cols=253 Identities=15% Similarity=0.145 Sum_probs=186.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
-++++-|.-+.||. .+++|+.+..+- +++||.+..-.+.+.+.+|+-.|.++.++|.+ .
T Consensus 147 rGHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------d 206 (406)
T KOG0295|consen 147 RGHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------D 206 (406)
T ss_pred hccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------C
Confidence 44555566666654 258899998886 99999987667788889999999999999863 1
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVG 208 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~ 208 (838)
.|+.++ .+++|+.|++.+|.++.++.-+ ..|..|+.+.+ ++|.+
T Consensus 207 ~ilS~s---------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 207 HILSCS---------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred eeeecc---------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 444322 2378999999999999999754 58999999987 66665
Q ss_pred eC-CeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 LA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 l~-~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
.. .+|++|=+.+++++..++.|.-| ...+++-|- .+|+... -.+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~wap~-~~~~~i~--------------------~at- 298 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHP-------------VECIAWAPE-SSYPSIS--------------------EAT- 298 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccc-------------eEEEEeccc-ccCcchh--------------------hcc-
Confidence 54 47999999999888777765543 123333110 0111100 000
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
+.. + +..++ ..++.|++|++||+.++.++-+|.+
T Consensus 299 ----------------------------------~~~-------~-~~~~l----~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 299 ----------------------------------GST-------N-GGQVL----GSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred ----------------------------------CCC-------C-CccEE----EeecccceEEEEeccCCeEEEEEec
Confidence 000 0 00011 1467899999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
|.+.|..++|+|.|++|+++.+|++ +||||+.. + +++..+. .+..-|.++.|..+.-+++
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~-------~----------~cmk~~~--ah~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKN-------L----------QCMKTLE--AHEHFVTSLDFHKTAPYVV 392 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCc-EEEEEecc-------c----------eeeeccC--CCcceeEEEecCCCCceEE
Confidence 9999999999999999999999765 99999964 2 4666654 2334599999999999999
Q ss_pred EEeCCCeEEEEe
Q 003221 448 IVSSKGTCHVFV 459 (838)
Q Consensus 448 s~S~dGTVhIw~ 459 (838)
+|+-|.|+++|.
T Consensus 393 TGsVdqt~KvwE 404 (406)
T KOG0295|consen 393 TGSVDQTVKVWE 404 (406)
T ss_pred eccccceeeeee
Confidence 999999999996
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.76 E-value=2e-16 Score=165.29 Aligned_cols=226 Identities=15% Similarity=0.194 Sum_probs=160.3
Q ss_pred CCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 74 ~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
+++..+.|..+ .+++||++ +++....|.+|..-|.+++|.|+ +|.+ |++
T Consensus 74 dg~~alS~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~d------------n~qi---vSG-------------- 123 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTD------------NRQI---VSG-------------- 123 (315)
T ss_pred CCceEEeccccceEEEEEec-CCcEEEEEEecCCceEEEEecCC------------Ccee---ecC--------------
Confidence 35566666555 59999995 56888899999999999999975 2232 332
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEeCCC----eEEE-EeCCeEEEEECCCCceee
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR----IVAV-GLATQIYCFDALTLENKF 225 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f--~s~V~sV~~s~~----iLaV-~l~~~I~IwD~~t~e~l~ 225 (838)
+- ++++++||...+......+. +..|..|+|+|+ +|+. +-+..|++||+.+.+..+
T Consensus 124 -------Sr----------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 124 -------SR----------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred -------CC----------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 22 38999999987655544444 678999999987 4444 556789999999998777
Q ss_pred EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 226 tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
++..|.-- .+.++++| + |++.+
T Consensus 187 ~~~gh~~~-------------v~t~~vSp-------D----------------------------Gslca---------- 208 (315)
T KOG0279|consen 187 TFIGHSGY-------------VNTVTVSP-------D----------------------------GSLCA---------- 208 (315)
T ss_pred cccccccc-------------EEEEEECC-------C----------------------------CCEEe----------
Confidence 66554321 33444432 1 11111
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLA 385 (838)
+|..+|.+.+||+..++.+..+. |..+|++|+|+|+--.|+
T Consensus 209 --------------------------------------sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 209 --------------------------------------SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred --------------------------------------cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEe
Confidence 25678999999999999876664 678999999999987776
Q ss_pred EEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe---ccc----ccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003221 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI----TSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (838)
Q Consensus 386 TAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~---RG~----t~a~I~sIaFSpDg~~Las~S~dGTVhIw 458 (838)
.|- ++.|+|||+.+. ..+.+|. .|. ....-.+++||+||+.|.++-.|+.|++|
T Consensus 250 ~at--~~sIkIwdl~~~-----------------~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 250 AAT--ATSIKIWDLESK-----------------AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred ecc--CCceEEEeccch-----------------hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 655 567999999752 1222221 121 01235678999999999999999999999
Q ss_pred ecCC
Q 003221 459 VLSP 462 (838)
Q Consensus 459 ~l~~ 462 (838)
.+..
T Consensus 311 qv~~ 314 (315)
T KOG0279|consen 311 QVAK 314 (315)
T ss_pred Eeec
Confidence 8753
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.9e-16 Score=180.81 Aligned_cols=238 Identities=18% Similarity=0.213 Sum_probs=175.6
Q ss_pred CCeEEEEEecCc-EEEEEccCCC-ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g-~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
+++.|+.+..++ +++|+.+... +....+.+|.-.|..++|.|++ + .| +++
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-----------~--~l--~s~------------- 221 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-----------S--YL--LSG------------- 221 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-----------c--EE--EEe-------------
Confidence 355677775555 8999995433 1444557888999999999864 1 33 232
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe-CCCcEEEEEeCCC--eEEE-EeCCeEEEEECCCCceeeE
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR-FRSSVCMVRCSPR--IVAV-GLATQIYCFDALTLENKFS 226 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl-~tg~~V~tL~-f~s~V~sV~~s~~--iLaV-~l~~~I~IwD~~t~e~l~t 226 (838)
+ .+.+++|||+ ..+..+++++ +...|++++|+++ +|+. +.++.|+|||++++++...
T Consensus 222 --------s----------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 222 --------S----------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred --------c----------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 1 1379999999 5568889996 4569999999985 5555 4467899999999999999
Q ss_pred EeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhh
Q 003221 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (838)
Q Consensus 227 L~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la 306 (838)
|..|..+ ... ++|+.+. .+++
T Consensus 284 l~~hs~~-------------is~-------~~f~~d~----------------------------~~l~----------- 304 (456)
T KOG0266|consen 284 LKGHSDG-------------ISG-------LAFSPDG----------------------------NLLV----------- 304 (456)
T ss_pred eeccCCc-------------eEE-------EEECCCC----------------------------CEEE-----------
Confidence 9887653 122 2333321 0000
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCC--eEEEEECCCCC
Q 003221 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSP--ISALCFDPSGT 382 (838)
Q Consensus 307 ~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--~v~~~~aH~sp--IsaLaFSPdGt 382 (838)
.++.||+|+|||+.++. ++..+..|..+ +++++|+|+|.
T Consensus 305 -------------------------------------s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 305 -------------------------------------SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred -------------------------------------EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 23568999999999998 57888887766 99999999999
Q ss_pred EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a--~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
+|+++..|++ +++||+.. + ..+.. .+|+... .+.+..++++++++.+++.|++|++|++
T Consensus 348 ~ll~~~~d~~-~~~w~l~~-------~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 348 YLLSASLDRT-LKLWDLRS-------G----------KSVGT-YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred EEEEecCCCe-EEEEEccC-------C----------cceee-ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 9999999655 99999953 2 12222 2344442 5677778999999999999999999999
Q ss_pred CCCCCccccccC
Q 003221 461 SPFGGDSGFQTL 472 (838)
Q Consensus 461 ~~~gg~~~~~~H 472 (838)
.+......+..|
T Consensus 409 ~s~~~~~~l~~h 420 (456)
T KOG0266|consen 409 SSGGILQRLEGH 420 (456)
T ss_pred CccchhhhhcCC
Confidence 997777888888
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=3.7e-17 Score=187.44 Aligned_cols=371 Identities=16% Similarity=0.128 Sum_probs=211.6
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
.+-+++.-|--+.|.... .+.+|+.|+.++ +++||+.....+..++..|-..|..+.|.++... .++..
T Consensus 142 ~fkG~gGvVssl~F~~~~-----~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~-----~ls~~ 211 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHW-----NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE-----LLSVG 211 (775)
T ss_pred EecCCCceEEEEEeCCcc-----chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-----EEEec
Confidence 456677777777887643 257899999987 8999997544455667788899999999986310 11111
Q ss_pred CcEEE-EEECCCC--CcCCCCCCCCCCCCc---ccCccCCCCC--CCCCCCCEEEEEECCCCeEEEEEeCCC-----cEE
Q 003221 130 HPFLL-VVAGEDT--NTLAPGQNRSHLGGV---RDGMMDSQSG--NCVNSPTAVRFYSFQSHCYEHVLRFRS-----SVC 196 (838)
Q Consensus 130 rpLLa-vV~~d~t--~~~~~~~~~~~~~~~---~~gs~d~~~~--~~~~~p~tV~IWDl~tg~~V~tL~f~s-----~V~ 196 (838)
|.-+. +.-.-.. ....+ -.....++ ++ .-+.++. .++...+++++||..+++++...+-++ ...
T Consensus 212 RDkvi~vwd~~~~~~l~~lp--~ye~~E~vv~l~~-~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~ 288 (775)
T KOG0319|consen 212 RDKVIIVWDLVQYKKLKTLP--LYESLESVVRLRE-ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLL 288 (775)
T ss_pred cCcEEEEeehhhhhhhheec--hhhheeeEEEech-hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcce
Confidence 11110 0000000 00000 00000000 11 0000011 123556788888888877765554331 223
Q ss_pred EEEeCCCeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCCCc--eeecCCCC
Q 003221 197 MVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRL 272 (838)
Q Consensus 197 sV~~s~~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~--~l~~~G~v 272 (838)
.+.-+.+++++..+.+|.+||..+++....+.++.... +-..-+|+ ++||.+++.+ .+.+.-..
T Consensus 289 ~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI------------~Dm~~lG~e~~~laVATNs~~lr~y~~~~~ 356 (775)
T KOG0319|consen 289 AIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI------------LDMKFLGPEESHLAVATNSPELRLYTLPTS 356 (775)
T ss_pred eccccCceEEEEccceEEEEEccccEEehhhcCCchhh------------eeeeecCCccceEEEEeCCCceEEEecCCC
Confidence 33334556777777778888888777666665543320 11123455 7777776643 22222111
Q ss_pred CCcccCC---CCCCCCCCCCCCcceeeeehhhhhhhh---cccc-----ccccccccccCCCCCCCCccCCCcccccccc
Q 003221 273 SPQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFA---AGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRHA 341 (838)
Q Consensus 273 s~q~l~~---~~~s~stsps~gslva~~A~ds~k~la---~Gl~-----ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~ 341 (838)
.-+-+.. ...|.+.. +.|.+.+..++|....+. .+.. +.-+++.+ +.-....+ +..+.-
T Consensus 357 ~c~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~------svgava~~---~~~asf 426 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN------SVGAVAGS---KLGASF 426 (775)
T ss_pred ceEEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc------ccceeeec---ccCccE
Confidence 1111111 11122211 223455555554432111 1110 01111111 00011111 111112
Q ss_pred ccccCCCceEEEEECCCCc---------EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCc
Q 003221 342 GADMDNAGIVVVKDFVTRA---------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 342 ~~~g~~~G~V~VwDl~s~~---------~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~ 412 (838)
++++++|+++++|++...+ ...+-.+|...|++++.+|+.+++||||.| ++.+||++.. +
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD-ktaKiW~le~-------~--- 495 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD-KTAKIWDLEQ-------L--- 495 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc-cceeeecccC-------c---
Confidence 3478899999999997621 112456899999999999999999999995 5699999953 2
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCC
Q 003221 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (838)
Q Consensus 413 ~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~ 476 (838)
+++..| +|+++ .|+|+.|++..+.||++|.|+||+||+|+.+....++.+|.+.+
T Consensus 496 -------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 496 -------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred -------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence 467777 57665 59999999999999999999999999999999999999997544
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=3.9e-17 Score=175.32 Aligned_cols=250 Identities=15% Similarity=0.211 Sum_probs=184.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
+++-+|..+-|-. ..-+.+++.++ .+++||.. ++++.+.|.+|...|..|.+.. ...+
T Consensus 106 g~r~~vt~v~~hp-------~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~a-------------~Gk~ 164 (406)
T KOG0295|consen 106 GHRSSVTRVIFHP-------SEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFDA-------------SGKY 164 (406)
T ss_pred ccccceeeeeecc-------CceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEec-------------CccE
Confidence 3455666666633 23466666565 59999995 5888888999988899998773 2235
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCC-CeEEEEEe-CCCcEEEEEeCC--CeEEEE
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP--RIVAVG 208 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~t-g~~V~tL~-f~s~V~sV~~s~--~iLaV~ 208 (838)
||.++. +-.+.+||+.+ .++++.+. +...|.+|.|-| +.|+.+
T Consensus 165 l~tcSs---------------------------------Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~ 211 (406)
T KOG0295|consen 165 LATCSS---------------------------------DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC 211 (406)
T ss_pred EEecCC---------------------------------ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec
Confidence 544221 13489999987 55666554 445788888865 555554
Q ss_pred -eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 -LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 -l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
-++.|+.|++.|+.+++++..|+.. +-.+++ ..+
T Consensus 212 srD~tik~We~~tg~cv~t~~~h~ew-------------vr~v~v-------~~D------------------------- 246 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYCVKTFPGHSEW-------------VRMVRV-------NQD------------------------- 246 (406)
T ss_pred ccccceeEEecccceeEEeccCchHh-------------EEEEEe-------cCC-------------------------
Confidence 4678999999999999988766553 111221 111
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
|.+. ++++++.+|+||-+.++++...|+.
T Consensus 247 ---Gti~------------------------------------------------As~s~dqtl~vW~~~t~~~k~~lR~ 275 (406)
T KOG0295|consen 247 ---GTII------------------------------------------------ASCSNDQTLRVWVVATKQCKAELRE 275 (406)
T ss_pred ---eeEE------------------------------------------------EecCCCceEEEEEeccchhhhhhhc
Confidence 1111 1356788999999999999999999
Q ss_pred CCCCeEEEEECCC----------C-----CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003221 368 HTSPISALCFDPS----------G-----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (838)
Q Consensus 368 H~spIsaLaFSPd----------G-----tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a 432 (838)
|..||-+++|-|. | .+|+++|.|++ ||+||+.+ | .+|++|. |+. .
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~t-------g----------~cL~tL~-ghd-n 335 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVST-------G----------MCLFTLV-GHD-N 335 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccC-------C----------eEEEEEe-ccc-c
Confidence 9999999998763 3 59999999665 99999964 4 6899984 544 4
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 433 ~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
.|.+++|+|-|+||+++.+|+|+|||++.......++..|.
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 69999999999999999999999999999888777776664
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.75 E-value=1.1e-16 Score=176.23 Aligned_cols=214 Identities=15% Similarity=0.231 Sum_probs=150.0
Q ss_pred CEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
+.+|+|+. .|..+.+|.+ +++|++++++++ +|..+-++++.+||+.+++..+.+.-+..|
T Consensus 257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--------------- 320 (524)
T KOG0273|consen 257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--------------- 320 (524)
T ss_pred cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC---------------
Confidence 78999997 5677788855 579999999986 455566778999999999877666544443
Q ss_pred eeEEcccEEE---E--eCCC--ceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccC
Q 003221 249 PMAVGPRWLA---Y--ASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (838)
Q Consensus 249 ~~Alspr~LA---y--s~~~--~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~ 321 (838)
++...|+. | ++.. ..+...|.. +=.+|+.++-+
T Consensus 321 --~lDVdW~~~~~F~ts~td~~i~V~kv~~~-----------------------------------~P~~t~~GH~g--- 360 (524)
T KOG0273|consen 321 --ALDVDWQSNDEFATSSTDGCIHVCKVGED-----------------------------------RPVKTFIGHHG--- 360 (524)
T ss_pred --ccceEEecCceEeecCCCceEEEEEecCC-----------------------------------CcceeeecccC---
Confidence 11112221 1 1110 111111110 00033433221
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---------CCEEEEEecCCC
Q 003221 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---------GTLLVTASVYGN 392 (838)
Q Consensus 322 p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd---------GtlLATAS~dGt 392 (838)
..+.+-.++.+..++ +++.|++++||..........|.+|...|..+.++|+ |..||+|+.|++
T Consensus 361 ---~V~alk~n~tg~LLa----S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 361 ---EVNALKWNPTGSLLA----SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred ---ceEEEEECCCCceEE----EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 123333333333333 5788999999999888899999999999999999996 568999999765
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 393 ~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
+++||+.. | ++++.|.++ ..+|++|+|||||++||+|+.||-||||++..++.....
T Consensus 434 -V~lwdv~~-------g----------v~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 434 -VKLWDVES-------G----------VPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred -EEEEEccC-------C----------ceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 99999964 4 688898764 468999999999999999999999999999876654433
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.74 E-value=2.3e-15 Score=184.12 Aligned_cols=246 Identities=14% Similarity=0.120 Sum_probs=164.8
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC---Cce--eEEe-eeccCcEEEEEEecCCCCCCCCCCc
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA---SNF--NELV-SKRDGPVSFLQMQPFPVKDDGCEGF 126 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~---g~v--~ell-s~hdg~V~~l~~lP~p~~~~~~d~F 126 (838)
.+.+.|.-+.|+. + +++|++|..+ .++|||++.. +.. ..++ -.+...|..+.+.|.
T Consensus 481 ~~~~~V~~i~fs~----d---g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------- 543 (793)
T PLN00181 481 NSSNLVCAIGFDR----D---GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY---------- 543 (793)
T ss_pred CCCCcEEEEEECC----C---CCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC----------
Confidence 3667788888875 3 3566666655 5999998531 100 0011 112346777777652
Q ss_pred ccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCC---
Q 003221 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--- 202 (838)
Q Consensus 127 ~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~--- 202 (838)
.. .+||..+ .+++|+|||+.+++.+..++. ...|+++++++
T Consensus 544 ~~--~~las~~---------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 544 IK--SQVASSN---------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred CC--CEEEEEe---------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCC
Confidence 11 2454321 137899999999999888864 46899999975
Q ss_pred CeEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCC
Q 003221 203 RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (838)
Q Consensus 203 ~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~ 281 (838)
++|+++. ++.|++||+.+++.+.++..+.. .+ .++|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~----------------v~-----~v~~~~~------------------- 628 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVSIGTIKTKAN----------------IC-----CVQFPSE------------------- 628 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEEecCCC----------------eE-----EEEEeCC-------------------
Confidence 3666655 56899999999887776643211 11 1222210
Q ss_pred CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-
Q 003221 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA- 360 (838)
Q Consensus 282 ~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~- 360 (838)
++..+ +.+..+|.|++||+.+.+
T Consensus 629 --------~g~~l------------------------------------------------atgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 629 --------SGRSL------------------------------------------------AFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred --------CCCEE------------------------------------------------EEEeCCCeEEEEECCCCCc
Confidence 00000 024568999999998765
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
.+..+.+|..+|.+++|. ++.+|+|++.||+ |+|||+..... + .....+..+ .|+ ...|.+++|+
T Consensus 653 ~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~----~-------~~~~~l~~~-~gh-~~~i~~v~~s 717 (793)
T PLN00181 653 PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSIS----G-------INETPLHSF-MGH-TNVKNFVGLS 717 (793)
T ss_pred cceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCcc----c-------cCCcceEEE-cCC-CCCeeEEEEc
Confidence 567889999999999997 7889999999775 99999853100 0 001345555 354 3468999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~ 462 (838)
+++++||+++.|++|+||+...
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCC
Confidence 9999999999999999999653
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=161.29 Aligned_cols=227 Identities=19% Similarity=0.214 Sum_probs=157.4
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEEEeCCeEEEEECCCCce--eeEEeecCCcccCCCCccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~--l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
+.+||||.+.||.+..++++. +.|.++.+.++ .||++....|++||+++... +.++..+.
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~--------------- 83 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT--------------- 83 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC---------------
Confidence 489999999999999999996 58888888764 89999999999999998753 33443332
Q ss_pred cceeEEc----ccEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccccccccccc
Q 003221 247 YGPMAVG----PRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (838)
Q Consensus 247 ~g~~Als----pr~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~ 320 (838)
.+.+++| .||+..++. .+.+|+.-..+-|.. +...
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~---------------------------------------~~~~ 124 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN---------------------------------------YQHN 124 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchh---------------------------------------ccCC
Confidence 2344443 299987664 467787411100000 0000
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 321 ~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
.|.. .....+|+. -+. .++++|.|+|||+.+...-..+. .-..+|.+|+..|||++|+.+-.+|+ ..||++
T Consensus 125 spVn-~vvlhpnQt--eLi----s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l 196 (311)
T KOG0315|consen 125 SPVN-TVVLHPNQT--ELI----SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRL 196 (311)
T ss_pred CCcc-eEEecCCcc--eEE----eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEc
Confidence 0000 011122211 011 47899999999999876555443 45679999999999999999999897 899999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC-CCccccccCC
Q 003221 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS 473 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~-gg~~~~~~H~ 473 (838)
.... . .+..+.+.+|+. ++.-|..+.||||+++||++|.|.||+||+++.+ +.+..+.+|.
T Consensus 197 ~~~~-----~------~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 197 LNHQ-----T------ASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred cCCC-----c------cccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 6421 1 112234455542 3346899999999999999999999999999988 7777888884
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.73 E-value=1.5e-17 Score=177.04 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=166.8
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
..+.|....+|. ..++.|.. ++++|||..+ -.+..+|.+|.|.|-|+++.. | +|
T Consensus 196 ~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd~--------------r-vi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYDE--------------R-VI 250 (499)
T ss_pred cCCceEEEEecc---------hhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeeccc--------------e-EE
Confidence 445566666654 24666665 5799999964 567788999999999999762 1 33
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCCeEEEEeCC-
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLAT- 211 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~iLaV~l~~- 211 (838)
++| + ++.||++||..+|+++++|-++ ..|+.++|+..+++.+..+
T Consensus 251 --isG---------------------S----------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDr 297 (499)
T KOG0281|consen 251 --VSG---------------------S----------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDR 297 (499)
T ss_pred --Eec---------------------C----------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCc
Confidence 443 2 2479999999999999999766 5899999999988887755
Q ss_pred eEEEEECCCCce---eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCC
Q 003221 212 QIYCFDALTLEN---KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (838)
Q Consensus 212 ~I~IwD~~t~e~---l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsp 288 (838)
.|.+||+..... .+.|.+|-. .++.+.++.+||
T Consensus 298 siaVWdm~sps~it~rrVLvGHrA-------------aVNvVdfd~kyI------------------------------- 333 (499)
T KOG0281|consen 298 SIAVWDMASPTDITLRRVLVGHRA-------------AVNVVDFDDKYI------------------------------- 333 (499)
T ss_pred eeEEEeccCchHHHHHHHHhhhhh-------------heeeeccccceE-------------------------------
Confidence 699999875421 111111110 011111111111
Q ss_pred CCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC
Q 003221 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (838)
Q Consensus 289 s~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH 368 (838)
++++.|.+|++||..+++.+.++.+|
T Consensus 334 ------------------------------------------------------VsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 334 ------------------------------------------------------VSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred ------------------------------------------------------EEecCCceEEEEeccceeeehhhhcc
Confidence 02456889999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
...|.|+.+ .|+++++||.|. +||+||+.. | .+|..| .|+. .-|.+|.|. .+.|++
T Consensus 360 kRGIAClQY--r~rlvVSGSSDn-tIRlwdi~~-------G----------~cLRvL-eGHE-eLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 360 KRGIACLQY--RDRLVVSGSSDN-TIRLWDIEC-------G----------ACLRVL-EGHE-ELVRCIRFD--NKRIVS 415 (499)
T ss_pred cccceehhc--cCeEEEecCCCc-eEEEEeccc-------c----------HHHHHH-hchH-Hhhhheeec--Cceeee
Confidence 999999987 689999999955 599999963 4 466555 4543 469999995 588999
Q ss_pred EeCCCeEEEEecCCCC
Q 003221 449 VSSKGTCHVFVLSPFG 464 (838)
Q Consensus 449 ~S~dGTVhIw~l~~~g 464 (838)
|.-||+|+||++....
T Consensus 416 GaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAAL 431 (499)
T ss_pred ccccceEEEEeccccc
Confidence 9999999999997643
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.73 E-value=9.4e-16 Score=161.09 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=168.3
Q ss_pred CCeEEEEEe-cCcEEEEEccCC--C---ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCC
Q 003221 74 FKQVLLLGY-QNGFQVLDVEDA--S---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (838)
Q Consensus 74 ~~~vL~lG~-~~G~qVWdv~~~--g---~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~ 147 (838)
.++.++.|. +|-.-||++... . .+.+.|.+|.|-+++.+|+++. .|+..+|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------~ilT~SG--------- 164 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------HILTGSG--------- 164 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--------------ceEecCC---------
Confidence 356666665 456899999633 1 3455678899999999999642 3333222
Q ss_pred CCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCC---C-eEEEEeCCeEEEEECCCCc
Q 003221 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP---R-IVAVGLATQIYCFDALTLE 222 (838)
Q Consensus 148 ~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~---~-iLaV~l~~~I~IwD~~t~e 222 (838)
+.+..+||+.+|+.+..+.- .+.|.++.+.| + ++..+++...++||++.+.
T Consensus 165 ------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 165 ------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred ------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 26899999999999998864 46999999987 3 4555778899999999999
Q ss_pred eeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhh
Q 003221 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (838)
Q Consensus 223 ~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~ 302 (838)
+.+++.+|... .+.+.+ -+ ++
T Consensus 221 c~qtF~ghesD-------------INsv~f-------fP---------------------------~G------------ 241 (343)
T KOG0286|consen 221 CVQTFEGHESD-------------INSVRF-------FP---------------------------SG------------ 241 (343)
T ss_pred eeEeecccccc-------------cceEEE-------cc---------------------------CC------------
Confidence 99988876552 223322 11 11
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCC
Q 003221 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPS 380 (838)
Q Consensus 303 k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a--H~spIsaLaFSPd 380 (838)
..+++|+.|++.++||+...+.++.+.. -..+|++++||-+
T Consensus 242 -------------------------------------~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 242 -------------------------------------DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred -------------------------------------CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 0123577899999999999999988873 2458999999999
Q ss_pred CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 381 GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
|+||..+-.|. +++|||... | ++.-.|. |+. .+|.+|..+|||.-||+||-|.|++||.
T Consensus 285 GRlLfagy~d~-~c~vWDtlk-------~----------e~vg~L~-GHe-NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDF-TCNVWDTLK-------G----------ERVGVLA-GHE-NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCC-ceeEeeccc-------c----------ceEEEee-ccC-CeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999987755 599999864 3 4555663 654 4799999999999999999999999995
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=8.2e-16 Score=177.05 Aligned_cols=187 Identities=21% Similarity=0.287 Sum_probs=144.7
Q ss_pred CCEEEEEECCCCe--EEEEE-eCCCcEEEEEeCCC--eEEEEe-CCeEEEEEC-CCCceeeEEeecCCcccCCCCccccc
Q 003221 172 PTAVRFYSFQSHC--YEHVL-RFRSSVCMVRCSPR--IVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGIN 244 (838)
Q Consensus 172 p~tV~IWDl~tg~--~V~tL-~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~-~t~e~l~tL~t~p~p~~~~~~~~~~~ 244 (838)
++++++|+..+.+ ..+++ .+...|.+++|+++ +|+.+. +.+|+|||+ ..+.+++++.+|+.+
T Consensus 180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~----------- 248 (456)
T KOG0266|consen 180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY----------- 248 (456)
T ss_pred CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-----------
Confidence 3789999997777 66666 45668999999886 555554 568999999 555788998888774
Q ss_pred cccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCC
Q 003221 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (838)
Q Consensus 245 ~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~g 324 (838)
...++ |.+.. .+++
T Consensus 249 --v~~~~-------f~p~g----------------------------~~i~----------------------------- 262 (456)
T KOG0266|consen 249 --VTSVA-------FSPDG----------------------------NLLV----------------------------- 262 (456)
T ss_pred --eEEEE-------ecCCC----------------------------CEEE-----------------------------
Confidence 22233 32210 1110
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcc
Q 003221 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (838)
Q Consensus 325 s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (838)
+++.|++|+|||+.+++++..|.+|..+|++++|+++|.+|+++|.||. |+|||+..
T Consensus 263 -------------------Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~vwd~~~--- 319 (456)
T KOG0266|consen 263 -------------------SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IRVWDLET--- 319 (456)
T ss_pred -------------------EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EEEEECCC---
Confidence 3567999999999999999999999999999999999999999998665 99999964
Q ss_pred cCCCCCCccccCCcce--EEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 405 RSGSGNHKYDWNSSHV--HLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 405 ~~~~G~~~~~~~~~~~--~l~~L~RG~t~a-~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
| . ++..+. +.... .++++.|+|++++|++++.|+++.+|++..........+|.
T Consensus 320 ----~----------~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 320 ----G----------SKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred ----C----------ceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 2 2 233443 44444 79999999999999999999999999998776666666664
No 30
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.71 E-value=1.1e-16 Score=164.86 Aligned_cols=199 Identities=21% Similarity=0.293 Sum_probs=149.6
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
..+|--|.-+.|++ |+ ..+|..|.+.=+||||++....-.+-+++|.+.|+.+.|+- .++ .
T Consensus 97 f~hkhivk~~af~~----ds--~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----------eD~--~ 157 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQ----DS--NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----------EDK--C 157 (334)
T ss_pred hhhhheeeeEEecc----cc--hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----------cCc--e
Confidence 45777788889988 43 34555555556899999766555566788999999999882 122 3
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCC--CeEEEEeC
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA 210 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~--~iLaV~l~ 210 (838)
++. +. .+++||+||.++++.+++|.|+++|.++..++ ++|.++..
T Consensus 158 iLS-Sa--------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 158 ILS-SA--------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred EEe-ec--------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC
Confidence 322 11 14899999999999999999999998888876 59999999
Q ss_pred CeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCC
Q 003221 211 TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (838)
Q Consensus 211 ~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~ 290 (838)
..|.+||+.+++.++... .| .| .....| +|..
T Consensus 205 ssV~Fwdaksf~~lKs~k---~P---------~n--V~SASL----------------------------------~P~k 236 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYK---MP---------CN--VESASL----------------------------------HPKK 236 (334)
T ss_pred ceeEEeccccccceeecc---Cc---------cc--cccccc----------------------------------cCCC
Confidence 999999999998776543 22 00 000111 1111
Q ss_pred CcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCC
Q 003221 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHT 369 (838)
Q Consensus 291 gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~-~aH~ 369 (838)
+.+ ..|..++.+..||..++..+..+ ++|-
T Consensus 237 ~~f-------------------------------------------------VaGged~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 237 EFF-------------------------------------------------VAGGEDFKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred ceE-------------------------------------------------EecCcceEEEEEeccCCceeeecccCCC
Confidence 111 12567899999999999988876 8999
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
+||-|+.|+|||.+.|++|+||+ ||+|++.+
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGT-IRLWQTTP 298 (334)
T ss_pred CceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence 99999999999999999999987 99999976
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1.4e-15 Score=174.71 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=100.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
++++|.+.+||++..++...+|.+|+..|.++.|+|..++|||||.|+| |+||.|.+ . .++.
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~-------f----------SClk 541 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSIST-------F----------SCLK 541 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEecc-------c----------eeee
Confidence 5788999999999999999999999999999999999999999999665 99999964 2 4788
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~ 475 (838)
+| .|++. .|.-++|-.+|+.|++++.||-++||+++....+.++..|+..
T Consensus 542 T~-eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 542 TF-EGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred ee-cCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 88 46554 5999999999999999999999999999999999999999754
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.70 E-value=2.5e-15 Score=175.21 Aligned_cols=240 Identities=20% Similarity=0.209 Sum_probs=182.4
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEe-cCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~-~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..++|++.|--..|.+. ...|+.|. |..++|||+ ..|.|..++.+|.+.|+++.+.+
T Consensus 244 ~l~GH~g~V~~l~~~~~-------~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~-------------- 301 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSG-------GDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP-------------- 301 (537)
T ss_pred eccCCCCCceeEEEecC-------CCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC--------------
Confidence 46777777776666551 23677776 557999997 57999999999999999998774
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCCeEEEE
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVG 208 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~iLaV~ 208 (838)
.+. ++ |++ |++|++|++.++.+++++. +..+|.+|.++.++|+++
T Consensus 302 --~~~-~s---------------------gs~----------D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsg 347 (537)
T KOG0274|consen 302 --FLL-VS---------------------GSR----------DNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSG 347 (537)
T ss_pred --ceE-ee---------------------ccC----------CceEEEEeccCcceEEEeccccccEEEEEecCCEEEEE
Confidence 222 23 233 3899999999999999999 788999999998876665
Q ss_pred e-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
. ++.|.+||+.++++++++..|... +-.+.+ .+..
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~gH~~~-------------V~sl~~-------~~~~------------------------ 383 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLSGHTGR-------------VYSLIV-------DSEN------------------------ 383 (537)
T ss_pred ecCceEEEEEhhhceeeeeecCCcce-------------EEEEEe-------cCcc------------------------
Confidence 5 667999999999999999887653 111222 1100
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEec
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK 366 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~-~~v~~~~ 366 (838)
+ ++ +|+.|+.|++||+.++ +++.++.
T Consensus 384 ----------------------------~---~~----------------------Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 384 ----------------------------R---LL----------------------SGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred ----------------------------e---EE----------------------eeeeccceEeecCCchhhhhhhhc
Confidence 0 00 2355789999999999 9999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
+|.+-+..+.+ .+++|.+++.||+ |++||+.. + .+++.+... +...|..+++. ...+
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~-------~----------~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEE-------G----------ECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred CCccccccccc--ccceeEecccccc-EEEeeccc-------C----------ceeeeeccC-CcccEEEeecC--cceE
Confidence 99999976665 6789999999886 99999965 2 466666432 33568888887 4678
Q ss_pred EEEeCCCeEEEEecCCCCCc
Q 003221 447 AIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 447 as~S~dGTVhIw~l~~~gg~ 466 (838)
++++.+|++++|++......
T Consensus 468 l~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EEEecCCeeEEEecccCchh
Confidence 89999999999999876543
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=8e-16 Score=176.58 Aligned_cols=225 Identities=20% Similarity=0.302 Sum_probs=175.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+++++|+++| ++|||+.. ..+.|+...|+|.+..++..|+. +-+ +.++
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~------------~g~-vT~s---------------- 473 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDN------------KGF-VTGS---------------- 473 (888)
T ss_pred CceEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCC------------Cce-EEec----------------
Confidence 57899999998 99999965 55667778999999999999863 112 2222
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCC-----CeE--------EEEEeCCCcEEEEEeCCC--eEEEEe-CCeEEEEE
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSPR--IVAVGL-ATQIYCFD 217 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~t-----g~~--------V~tL~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD 217 (838)
.+++|+|||++- |.. -.+|++...|++|+++|+ +|||++ ++++++|.
T Consensus 474 -----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 474 -----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred -----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 238999999852 211 256788999999999975 899988 56899999
Q ss_pred CCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeee
Q 003221 218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (838)
Q Consensus 218 ~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~ 297 (838)
+.|++...+|.+|..| +-.|.+++ .+ .++
T Consensus 537 lDtlKFflsLYGHkLP-------------V~smDIS~-----DS------------------------------kli--- 565 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLP-------------VLSMDISP-----DS------------------------------KLI--- 565 (888)
T ss_pred ecceeeeeeecccccc-------------eeEEeccC-----Cc------------------------------CeE---
Confidence 9999988888899887 22233211 00 000
Q ss_pred ehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003221 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (838)
Q Consensus 298 A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaF 377 (838)
.+++.|.+|+||-+.=|.+-..|-||+..|.++.|
T Consensus 566 ---------------------------------------------vTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 566 ---------------------------------------------VTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred ---------------------------------------------EeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 03456889999999999999999999999999999
Q ss_pred CCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003221 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (838)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhI 457 (838)
-|+..++.||+.||. |+-||-.. ..++.+|. |++ ..|++++-+|+|.+++++|.|.++++
T Consensus 601 ~P~~~~FFt~gKD~k-vKqWDg~k-----------------Fe~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGK-VKQWDGEK-----------------FEEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cccceeEEEecCcce-EEeechhh-----------------hhhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEe
Confidence 999999999999765 99998642 25667774 544 47999999999999999999999999
Q ss_pred EecCC
Q 003221 458 FVLSP 462 (838)
Q Consensus 458 w~l~~ 462 (838)
|.-..
T Consensus 661 wE~td 665 (888)
T KOG0306|consen 661 WERTD 665 (888)
T ss_pred eeccC
Confidence 98654
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.2e-14 Score=167.24 Aligned_cols=223 Identities=18% Similarity=0.225 Sum_probs=146.7
Q ss_pred CcEEEEEeCCC--eEEEEeCCe-EEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEc--ccEEEEeCCC---c
Q 003221 193 SSVCMVRCSPR--IVAVGLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNT---L 264 (838)
Q Consensus 193 s~V~sV~~s~~--iLaV~l~~~-I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Als--pr~LAys~~~---~ 264 (838)
..|.+.+|++. +|||+.... .++|.+....+++.|.-...+ ...+++. ..|||+.... .
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~-------------I~t~~~N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK-------------ILTVSFNSTGDWIAFGCSKLGQL 332 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce-------------eeEEEecccCCEEEEcCCccceE
Confidence 68999999985 899999765 569999999999988643232 3456666 4899998753 5
Q ss_pred eeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccc
Q 003221 265 LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344 (838)
Q Consensus 265 ~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~ 344 (838)
++|+- |. .++|- +.+++..++ ....-+++ +...+ +
T Consensus 333 lVweW-----qs--------------EsYVl----------------KQQgH~~~i----~~l~YSpD--gq~ia----T 367 (893)
T KOG0291|consen 333 LVWEW-----QS--------------ESYVL----------------KQQGHSDRI----TSLAYSPD--GQLIA----T 367 (893)
T ss_pred EEEEe-----ec--------------cceee----------------eccccccce----eeEEECCC--CcEEE----e
Confidence 66652 10 01110 011111110 01111222 22222 5
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc----------------CCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----------------SGS 408 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~----------------~~~ 408 (838)
|..||.|+|||..++-+..+|..|++.|++++|+..|..|+++|.||+ +|.||+....+. +.+
T Consensus 368 G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 778999999999999999999999999999999999999999999997 999999653110 011
Q ss_pred CCCcc--c--------cCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCC
Q 003221 409 GNHKY--D--------WNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (838)
Q Consensus 409 G~~~~--~--------~~~-~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~ 476 (838)
|.... + |+- +.+.+ +...|+ .++|.+++|+|++..||++|-|.||++|++-...+.+.--.+.+.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqll-DiLsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdv 523 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLL-DILSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDV 523 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeee-ehhcCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccce
Confidence 11000 0 000 11122 222454 4689999999999999999999999999996655444333333333
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.68 E-value=1.6e-14 Score=160.93 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=136.5
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
-++...|.++.+-+|.=.+ =++...+..|..-|+++++.|++ + +.|.++.
T Consensus 161 fRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG-----------~--~Fat~gs---------------- 210 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDG-----------S--RFATAGS---------------- 210 (603)
T ss_pred eEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCC-----------C--eEEEecC----------------
Confidence 4555555556688888744 44666677788899999999974 2 4555432
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEE
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~----f~s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL 227 (838)
++++.+||-++|+.+..|. +.+.|+++.++|+ ++.++.+..++|||+.+.++..++
T Consensus 211 -----------------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 211 -----------------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred -----------------CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 3789999999999999997 5679999999986 677777889999999999887776
Q ss_pred eecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhc
Q 003221 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (838)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~ 307 (838)
..... ..-+-+|. +|.-+++
T Consensus 274 ~~~~~--------------v~dqqvG~-----------lWqkd~l----------------------------------- 293 (603)
T KOG0318|consen 274 PMGST--------------VEDQQVGC-----------LWQKDHL----------------------------------- 293 (603)
T ss_pred ecCCc--------------hhceEEEE-----------EEeCCeE-----------------------------------
Confidence 43111 00111110 1110000
Q ss_pred cccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003221 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (838)
Q Consensus 308 Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATA 387 (838)
. +-+-+|++..++.....++.++.+|..+|++|+.+|||++|.||
T Consensus 294 ------------------------------I-----tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 294 ------------------------------I-----TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred ------------------------------E-----EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 0 12346889999999888999999999999999999999999999
Q ss_pred ecCCCEEEEEecCCC
Q 003221 388 SVYGNNINIFRIMPS 402 (838)
Q Consensus 388 S~dGt~IrVwdi~p~ 402 (838)
|.||+ |.=|++...
T Consensus 339 syDG~-I~~W~~~~g 352 (603)
T KOG0318|consen 339 SYDGH-INSWDSGSG 352 (603)
T ss_pred ccCce-EEEEecCCc
Confidence 99987 899998643
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.67 E-value=3.3e-16 Score=170.15 Aligned_cols=245 Identities=17% Similarity=0.256 Sum_probs=164.5
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++-|++|.+.| |-+|+.. +=+...++..||.+|++++++++. ..+ +++|.
T Consensus 108 GRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g-------------~wm--iSgD~------------- 158 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNG-------------TWM--ISGDK------------- 158 (464)
T ss_pred CceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCC-------------CEE--EEcCC-------------
Confidence 56677777776 9999984 345667889999999999999653 233 45542
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCC-CcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEe
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFR-SSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVL 228 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL-~f~-s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~ 228 (838)
.+.|++|+..-.. |+.+ ..+ ..|.+++|+++ ++.++.++.|+|||....+....|.
T Consensus 159 ------------------gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 159 ------------------GGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred ------------------CceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 2689999986543 3333 344 68999999975 5666667799999988776655554
Q ss_pred ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcc
Q 003221 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (838)
Q Consensus 229 t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~G 308 (838)
.|--. + +.++ |+ |. .+++|
T Consensus 220 GHgwd-------------V-------ksvd--------WH-------------------P~-kgLia------------- 238 (464)
T KOG0284|consen 220 GHGWD-------------V-------KSVD--------WH-------------------PT-KGLIA------------- 238 (464)
T ss_pred cCCCC-------------c-------ceec--------cC-------------------Cc-cceeE-------------
Confidence 43210 0 1111 11 00 01111
Q ss_pred ccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 003221 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388 (838)
Q Consensus 309 l~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS 388 (838)
+++.|..|++||-+++.+++++.+|...|.++.|+|+|.+|+|+|
T Consensus 239 -----------------------------------sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 239 -----------------------------------SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred -----------------------------------EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence 234566999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCc----ccCC-----CCC---------CccccCCcceE--EE------EEecccccccEEEEEEccC
Q 003221 389 VYGNNINIFRIMPSC----MRSG-----SGN---------HKYDWNSSHVH--LY------KLHRGITSATIQDICFSHY 442 (838)
Q Consensus 389 ~dGt~IrVwdi~p~~----~~~~-----~G~---------~~~~~~~~~~~--l~------~L~RG~t~a~I~sIaFSpD 442 (838)
. ++.++|||+..-. .+.. +.+ ++..+..+..+ +. ...-+ +...|++++|.|=
T Consensus 284 k-D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A-Hd~~iwsl~~hPl 361 (464)
T KOG0284|consen 284 K-DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA-HDGEIWSLAYHPL 361 (464)
T ss_pred C-CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc-cccceeeeecccc
Confidence 9 5679999996210 0000 000 00011111111 11 11112 2346999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCC
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg 465 (838)
|..||+||.|.|++.|.-...+.
T Consensus 362 Ghil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 362 GHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred ceeEeecCCCcceeeeccCCCCC
Confidence 99999999999999998765554
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.67 E-value=2.8e-14 Score=144.92 Aligned_cols=211 Identities=18% Similarity=0.254 Sum_probs=150.3
Q ss_pred EeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEE
Q 003221 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (838)
Q Consensus 100 lls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWD 179 (838)
.+..|.++|.++.+.|+. .+|++... .+.|++||
T Consensus 4 ~~~~h~~~i~~~~~~~~~-------------~~l~~~~~---------------------------------~g~i~i~~ 37 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDG-------------KLLATGSG---------------------------------DGTIKVWD 37 (289)
T ss_pred HhcccCCCEEEEEEcCCC-------------CEEEEeec---------------------------------CcEEEEEE
Confidence 455788999999999752 35554221 26899999
Q ss_pred CCCCeEEEEEeCC-CcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEccc
Q 003221 180 FQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPR 255 (838)
Q Consensus 180 l~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr 255 (838)
+.+++....+..+ ..+..+.+.++ .|+++. ++.|++||+.+++....+..+..+ . .
T Consensus 38 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i-------~ 97 (289)
T cd00200 38 LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------V-------S 97 (289)
T ss_pred eeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------E-------E
Confidence 9998877777654 57778999875 566555 778999999987666655433221 1 1
Q ss_pred EEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCcc
Q 003221 256 WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 335 (838)
Q Consensus 256 ~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~ 335 (838)
.+++..+ +.+++
T Consensus 98 ~~~~~~~----------------------------~~~~~---------------------------------------- 109 (289)
T cd00200 98 SVAFSPD----------------------------GRILS---------------------------------------- 109 (289)
T ss_pred EEEEcCC----------------------------CCEEE----------------------------------------
Confidence 1222111 00000
Q ss_pred ccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 336 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 336 k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
.+..+|.|.+||+.+++....+..|..+|.+++|+|++.+|++++.+|. |++||+.. +
T Consensus 110 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~-------~------ 167 (289)
T cd00200 110 --------SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT-IKLWDLRT-------G------ 167 (289)
T ss_pred --------EecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc-EEEEEccc-------c------
Confidence 1234789999999988889999999999999999999999999986665 99999853 2
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 416 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
..+..+. + +...|.+++|+|+++.|++++.+|.+++|++........+..|
T Consensus 168 ----~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 168 ----KCVATLT-G-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ----ccceeEe-c-CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 2334443 2 3346999999999999999999999999999764443334344
No 38
>PTZ00421 coronin; Provisional
Probab=99.67 E-value=4.9e-14 Score=163.59 Aligned_cols=221 Identities=15% Similarity=0.146 Sum_probs=149.0
Q ss_pred cEEEEEccCCCceeE---EeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCcc
Q 003221 85 GFQVLDVEDASNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMM 161 (838)
Q Consensus 85 G~qVWdv~~~g~v~e---lls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~ 161 (838)
|+.|+.++..|.... ++.+|.++|..++|.| |... +|+..+.
T Consensus 52 g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP----------~d~~--~LaSgS~----------------------- 96 (493)
T PTZ00421 52 STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNP----------FDPQ--KLFTASE----------------------- 96 (493)
T ss_pred ceEEeeccccccCCCCCceEeCCCCCEEEEEEcC----------CCCC--EEEEEeC-----------------------
Confidence 344444444454333 5778999999999998 2222 5554221
Q ss_pred CCCCCCCCCCCCEEEEEECCCCe-------EEEEEe-CCCcEEEEEeCCC---eEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 162 DSQSGNCVNSPTAVRFYSFQSHC-------YEHVLR-FRSSVCMVRCSPR---IVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 162 d~~~~~~~~~p~tV~IWDl~tg~-------~V~tL~-f~s~V~sV~~s~~---iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+++|++||+.++. .+..|. +...|..|+|++. +|+++. ++.|+|||+.+++.+.++..
T Consensus 97 ----------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 97 ----------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred ----------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 3789999997653 455665 4468999999873 666644 67899999999988777665
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
|..+ ... |++..+. .+++
T Consensus 167 h~~~-------------V~s-------la~spdG----------------------------~lLa-------------- 184 (493)
T PTZ00421 167 HSDQ-------------ITS-------LEWNLDG----------------------------SLLC-------------- 184 (493)
T ss_pred CCCc-------------eEE-------EEEECCC----------------------------CEEE--------------
Confidence 5442 112 2332210 0100
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEEEe
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVTAS 388 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spI-saLaFSPdGtlLATAS 388 (838)
++..||.|+|||+.+++.+..+.+|.+.+ ..+.|.+++.+|+|++
T Consensus 185 ----------------------------------tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 185 ----------------------------------TTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred ----------------------------------EecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence 24568999999999999999999998764 5688999988888765
Q ss_pred c---CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCC
Q 003221 389 V---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (838)
Q Consensus 389 ~---dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~ 463 (838)
. .+..|+|||+... . ..+... .......+....|++|+++|++++ .|++|++|++...
T Consensus 231 ~s~s~Dr~VklWDlr~~------~----------~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKM------A----------SPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cCCCCCCeEEEEeCCCC------C----------CceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3 1346999998531 1 122222 112223567778999999999988 5999999999754
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.67 E-value=4e-15 Score=159.51 Aligned_cols=224 Identities=18% Similarity=0.284 Sum_probs=175.2
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
..-|++|..++ ++|||+. +|.+.-.|.+|-..|+.|++++ .+|+|.. +++
T Consensus 163 n~wf~tgs~DrtikIwDla-tg~LkltltGhi~~vr~vavS~-------------rHpYlFs-~ge-------------- 213 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLA-TGQLKLTLTGHIETVRGVAVSK-------------RHPYLFS-AGE-------------- 213 (460)
T ss_pred ceeEEecCCCceeEEEEcc-cCeEEEeecchhheeeeeeecc-------------cCceEEE-ecC--------------
Confidence 57888888775 9999995 6888888999999999999884 4688754 322
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCC--CeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~--~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
++.|+-|||..++.|..+- +-+.|++++..| ++|+.|. +..+++||++|-...++|.+
T Consensus 214 ------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 214 ------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 3789999999999887763 458999999997 4666655 56799999999999999988
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
|.+|. ..+.+ -+.+ || +
T Consensus 276 H~~~V-------------~~V~~------~~~d-----------pq-----------------v---------------- 292 (460)
T KOG0285|consen 276 HTNPV-------------ASVMC------QPTD-----------PQ-----------------V---------------- 292 (460)
T ss_pred CCCcc-------------eeEEe------ecCC-----------Cc-----------------e----------------
Confidence 88761 11111 0000 00 0
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~ 389 (838)
.+++.|++|++||+..++...++..|...|.||+.+|...++|+||.
T Consensus 293 ---------------------------------it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 293 ---------------------------------ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred ---------------------------------EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence 03567899999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 390 dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
| +|+-|++ |. | ..+..| .| +++.|.+++-..|+ ++++|+++|++..|+-...
T Consensus 340 d--nik~w~~-p~------g----------~f~~nl-sg-h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 340 D--NIKQWKL-PE------G----------EFLQNL-SG-HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred c--cceeccC-Cc------c----------chhhcc-cc-ccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 4 5999999 43 4 344454 34 45789999999887 6789999999999998753
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.67 E-value=2.1e-15 Score=161.60 Aligned_cols=217 Identities=14% Similarity=0.181 Sum_probs=159.9
Q ss_pred CceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCE
Q 003221 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (838)
Q Consensus 95 g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~t 174 (838)
-++..++++|-|+|++|++-|- ...++. |+. +++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~-------------n~wf~t-----------------------gs~----------Drt 174 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG-------------NEWFAT-----------------------GSA----------DRT 174 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC-------------ceeEEe-----------------------cCC----------Cce
Confidence 3456788899999999999873 124432 222 389
Q ss_pred EEEEECCCCeEEEEEe-CCCcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccccccee
Q 003221 175 VRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (838)
Q Consensus 175 V~IWDl~tg~~V~tL~-f~s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~ 250 (838)
++|||+.+|++..+|. +-..|..|+++++ ++.++.+.+|+|||+...+.++...+|-.. +-.+
T Consensus 175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~-------------V~~L 241 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG-------------VYCL 241 (460)
T ss_pred eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------eEEE
Confidence 9999999999999997 6689999999986 455566779999999987765543333220 1111
Q ss_pred EEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCcc
Q 003221 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (838)
Q Consensus 251 Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s 330 (838)
++ |+...+
T Consensus 242 ~l------hPTldv------------------------------------------------------------------ 249 (460)
T KOG0285|consen 242 DL------HPTLDV------------------------------------------------------------------ 249 (460)
T ss_pred ec------ccccee------------------------------------------------------------------
Confidence 11 111000
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC
Q 003221 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (838)
Q Consensus 331 ~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~ 410 (838)
+ .++..|.+++|||+.+...+..+.+|+.+|..+.|.|-.-.++|+|.|++ ||+||+.. |
T Consensus 250 -------l----~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl~a-------g- 309 (460)
T KOG0285|consen 250 -------L----VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDLRA-------G- 309 (460)
T ss_pred -------E----EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeeecc-------C-
Confidence 0 03456889999999999999999999999999999997778999999776 99999964 3
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 411 ~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
+.+..|. ++...|.+++..|+-..+|++|.|. ++-|++....-..++.+|+.
T Consensus 310 ---------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 310 ---------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred ---------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc
Confidence 3444543 2344799999999999999988885 89999977665666777764
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.67 E-value=7.4e-15 Score=152.49 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=171.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeE-EeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNE-LVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~e-lls~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..++..+|.-+.|+- + +.-|+.|.-+ .+.||+++......+ ...+|.+-|..+.+.|. .
T Consensus 16 ~~~~~~~v~Sv~wn~----~---g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~------------~ 76 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC----D---GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK------------H 76 (313)
T ss_pred hhhhhhcceEEEEcc----c---CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC------------C
Confidence 345667788888875 3 4567777655 589999975432222 23566678888888764 2
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEE
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV 207 (838)
.++++++++ +++|++||.++++++..+.-...=..+.++|+ .+++
T Consensus 77 ~d~~atas~---------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 77 PDLFATASG---------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAV 123 (313)
T ss_pred CcceEEecC---------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEE
Confidence 357776553 27899999999999999988876677788775 5555
Q ss_pred Ee-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
+. ++.|.++|+++.+....-. -+ + . .+-++ |+.
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~---~~------~-e----~ne~~---------------w~~----------------- 157 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ---FK------F-E----VNEIS---------------WNN----------------- 157 (313)
T ss_pred ecCcccEEEEEecccceeehhc---cc------c-e----eeeee---------------ecC-----------------
Confidence 54 6789999999876543211 11 0 0 11111 110
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
++.-+. -....|.|.|....+.+.+..|+
T Consensus 158 --~nd~Ff-------------------------------------------------lt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 158 --SNDLFF-------------------------------------------------LTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred --CCCEEE-------------------------------------------------EecCCceEEEEeccccccccccc
Confidence 000000 01235889999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
||....-|+.|+|+|++|||||.| ..+-+||+... .++..+.| ...+|..|+||.||++|
T Consensus 187 AH~snCicI~f~p~GryfA~GsAD-AlvSLWD~~EL-----------------iC~R~isR--ldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSAD-ALVSLWDVDEL-----------------ICERCISR--LDWPVRTLSFSHDGRML 246 (313)
T ss_pred cCCcceEEEEECCCCceEeecccc-ceeeccChhHh-----------------hhheeecc--ccCceEEEEeccCccee
Confidence 999999999999999999999995 56999999531 24444444 34579999999999999
Q ss_pred EEEeCCCeEEEEecCCCC
Q 003221 447 AIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 447 as~S~dGTVhIw~l~~~g 464 (838)
|++|.|..|-|=.+++..
T Consensus 247 ASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGD 264 (313)
T ss_pred eccCccceEEeEecccCC
Confidence 999999888776665543
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.67 E-value=5.4e-15 Score=172.50 Aligned_cols=228 Identities=15% Similarity=0.146 Sum_probs=169.0
Q ss_pred EEEEEec-CcEEEEEccCCCceeEE-eeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 77 VLLLGYQ-NGFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 77 vL~lG~~-~G~qVWdv~~~g~v~el-ls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
.+..|.. ..+++||..+ +.+... +.+|.|.|..+++.- -.++|.. |
T Consensus 220 ~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~-------------~~~~lvs--g---------------- 267 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPS-------------GGDKLVS--G---------------- 267 (537)
T ss_pred eEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEec-------------CCCEEEE--E----------------
Confidence 3445554 5588999964 555555 889999999999871 1135533 2
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCCeEEE-EeCCeEEEEECCCCceeeEEeecCC
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~ 232 (838)
+ .+.++++||..+|++++++.. .+.|..+...+.+++. +.+.+|++||+.++.+++++..|..
T Consensus 268 -----S----------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 268 -----S----------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred -----e----------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 1 138999999999999999984 5688888888877766 4678999999999999888876544
Q ss_pred cccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccc
Q 003221 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~kt 312 (838)
+ +..+ .+..+ ++
T Consensus 333 ~-------------V~~v-------~~~~~------------------------------~l------------------ 344 (537)
T KOG0274|consen 333 P-------------VNCV-------QLDEP------------------------------LL------------------ 344 (537)
T ss_pred c-------------EEEE-------EecCC------------------------------EE------------------
Confidence 3 1112 11110 00
Q ss_pred ccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC
Q 003221 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (838)
Q Consensus 313 ls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt 392 (838)
..+..||+|.|||+..+++++.+.+|+..|.+|.|++. .++.+||.|+
T Consensus 345 ------------------------------vsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~- 392 (537)
T KOG0274|consen 345 ------------------------------VSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT- 392 (537)
T ss_pred ------------------------------EEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc-
Confidence 02467899999999999999999999999999999887 8999999975
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccccc
Q 003221 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 393 ~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~ 471 (838)
.|++||+.. + .++++.| .| +.+.+.++. ..+++|.+++.|++|++||++.++....+.+
T Consensus 393 ~IkvWdl~~-------~---------~~c~~tl-~~-h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 393 TIKVWDLRT-------K---------RKCIHTL-QG-HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ceEeecCCc-------h---------hhhhhhh-cC-Ccccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence 499999953 1 0345555 23 334565554 4578999999999999999999887766655
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=165.51 Aligned_cols=224 Identities=17% Similarity=0.240 Sum_probs=164.8
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+.+|+.++++..++|++++ ..++.+|++|.+.|.++.+.-. . ..+|++
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~-----------~----~~vVsg--------------- 279 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLS-----------H----SRVVSG--------------- 279 (459)
T ss_pred CceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhcc-----------c----cceeec---------------
Confidence 47889999999999999964 6688899999999999987621 1 124442
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEeecCC
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~ 232 (838)
+ .++++++||+.+..+.+++-+-+.+.+|.++...++.+- ++.|++||+++..+..++.....
T Consensus 280 ------s----------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~ 343 (459)
T KOG0288|consen 280 ------S----------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR 343 (459)
T ss_pred ------c----------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc
Confidence 2 248999999999999999989999999999865555554 66899999998876655432110
Q ss_pred cccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccc
Q 003221 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~kt 312 (838)
...+.++. ++-.+
T Consensus 344 --------------vtSl~ls~----------------------------------~g~~l------------------- 356 (459)
T KOG0288|consen 344 --------------VTSLDLSM----------------------------------DGLEL------------------- 356 (459)
T ss_pred --------------eeeEeecc----------------------------------CCeEE-------------------
Confidence 11111100 00000
Q ss_pred ccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEe
Q 003221 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTAS 388 (838)
Q Consensus 313 ls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH----~spIsaLaFSPdGtlLATAS 388 (838)
+ +...|.++.+.|+.+.+....|.|- .+..+.+.|||+|.|+|+||
T Consensus 357 --------L----------------------sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 357 --------L----------------------SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred --------e----------------------eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 0 1134667889999988888777753 23488999999999999999
Q ss_pred cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 389 ~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
.||. ++||++.. | .+...|..-..++.|.+++|+|-|..|++++.++.+.+|.
T Consensus 407 ~dgs-v~iW~v~t-------g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 407 ADGS-VYIWSVFT-------G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCc-EEEEEccC-------c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9887 99999964 3 3555554333344699999999999999999999999994
No 44
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.66 E-value=8.4e-15 Score=154.57 Aligned_cols=254 Identities=18% Similarity=0.184 Sum_probs=174.2
Q ss_pred Ccceeeeccccccccceeccc-CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcE
Q 003221 30 ASTVASTVRSAGASVAASISN-ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPV 108 (838)
Q Consensus 30 ~~~~~~~~~~~~~s~a~~i~~-~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V 108 (838)
|++=..|||---..-+|.... ....+...|+-++|.. |+ .+|++.|.++..++||+.. +.+ ..+.-|++||
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dg--skVf~g~~Dk~~k~wDL~S-~Q~-~~v~~Hd~pv 116 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DG--SKVFSGGCDKQAKLWDLAS-GQV-SQVAAHDAPV 116 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CC--ceEEeeccCCceEEEEccC-CCe-eeeeecccce
Confidence 445556666654333333322 2244667788888866 43 5788888899999999964 444 5678899999
Q ss_pred EEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEE
Q 003221 109 SFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV 188 (838)
Q Consensus 109 ~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~t 188 (838)
+.+.+.+.+. .++|+ +|+|| ++|++||+|..+.+.+
T Consensus 117 kt~~wv~~~~-----------~~cl~-----------------------TGSWD----------KTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 117 KTCHWVPGMN-----------YQCLV-----------------------TGSWD----------KTLKFWDTRSSNPVAT 152 (347)
T ss_pred eEEEEecCCC-----------cceeE-----------------------ecccc----------cceeecccCCCCeeee
Confidence 9999997531 23443 36888 8999999999999999
Q ss_pred EeCCCcEEEEEeCCCeEEEEeCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCC-Ccee
Q 003221 189 LRFRSSVCMVRCSPRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN-TLLL 266 (838)
Q Consensus 189 L~f~s~V~sV~~s~~iLaV~l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~-~~~l 266 (838)
+.++..||++.+-..+++|++++ .|.+|++.+....+.....|+ -+..|.+|.-.+ ...+
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL------------------k~Q~R~va~f~d~~~~a 214 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL------------------KWQTRCVACFQDKDGFA 214 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc------------------cceeeEEEEEecCCceE
Confidence 99999999999999999998876 599999987765544333333 234466664322 1100
Q ss_pred ecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccC
Q 003221 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (838)
Q Consensus 267 ~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~ 346 (838)
-|+
T Consensus 215 -----------------------------------------------------------------------------lGs 217 (347)
T KOG0647|consen 215 -----------------------------------------------------------------------------LGS 217 (347)
T ss_pred -----------------------------------------------------------------------------eee
Confidence 022
Q ss_pred CCceEEEEECCCC--cEEEEeccCCC---------CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 347 NAGIVVVKDFVTR--AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 347 ~~G~V~VwDl~s~--~~v~~~~aH~s---------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
..|.|-|..+..+ +.--+|+.|.. +|+.|+|.|.-..|||++.||+ +..||-...
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar------------- 283 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDAR------------- 283 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhh-------------
Confidence 3445555444443 33345555552 6788999999888999999887 999997421
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 416 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
.+|.... .+..+|.+.+|+.+|.++|.+.
T Consensus 284 ----~kLk~s~--~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 284 ----TKLKTSE--THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ----hhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence 2333322 2456899999999999887754
No 45
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.66 E-value=4.9e-15 Score=171.62 Aligned_cols=111 Identities=13% Similarity=0.228 Sum_probs=95.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+++.|++-++|.......+..|.+|-+.|.|+.|.|++.|+||+|. ++++|+||+.+ | ..+.
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~-------G----------~~VR 571 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVST-------G----------NSVR 571 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC-CceEEEEEcCC-------C----------cEEE
Confidence 4567889999999999999999999999999999999999999998 56699999976 4 2333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
.| .|+ .++|.+|+|||+|+|||+|+.||.|+|||+........+.+|..
T Consensus 572 iF-~GH-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ 620 (707)
T KOG0263|consen 572 IF-TGH-KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG 620 (707)
T ss_pred Ee-cCC-CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC
Confidence 33 674 56899999999999999999999999999987776777888843
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.65 E-value=1.1e-15 Score=168.93 Aligned_cols=269 Identities=14% Similarity=0.109 Sum_probs=187.8
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
...+|++.|..++|=.+ ...+|+.|..++ ++||++-+.+.+.+++.+|..+|+.+.+.+.+.
T Consensus 209 ~~~gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~----------- 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT----------- 271 (503)
T ss_pred eccCCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----------
Confidence 35677777777776321 145666666555 999999888899999999999999999986541
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC----eE
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR----IV 205 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~----iL 205 (838)
.+| .+ ++ ++.|++||..||+++..+.....++.|.++++ +|
T Consensus 272 -~fL-S~-----------------------sf----------D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 272 -SFL-SA-----------------------SF----------DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred -eee-ee-----------------------ec----------ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence 133 21 22 38999999999999999998899999999875 45
Q ss_pred EEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 206 AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 206 aV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
+.+.+..|..||+++++.++....|--+ ...+ .|-..
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i-------~F~~~----------------------- 353 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDI-------TFVDE----------------------- 353 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHhhhhh-------------eeee-------EEccC-----------------------
Confidence 5566779999999999865543222110 0011 11110
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
+. + +.+.+.++.|+||+....-.+..+
T Consensus 354 --------------------------------------g~----------r-----FissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 354 --------------------------------------GR----------R-----FISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred --------------------------------------Cc----------e-----EeeeccCccEEEEEcCCCccchhh
Confidence 00 0 012345789999999876554433
Q ss_pred -ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCC
Q 003221 366 -KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYS 443 (838)
Q Consensus 366 -~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a-~I~sIaFSpDg 443 (838)
..+.....+|+..|+|..++.-|. |..|-||.+.+.+.. ..++-.+|+..+ --..|.|||||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~-dN~i~ifs~~~~~r~---------------nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSM-DNYIAIFSTVPPFRL---------------NKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cchhhccCcceecCCCCCeehhhcc-CceEEEEeccccccc---------------CHhhhhcceeccCceeeEEEcCCC
Confidence 234445669999999999999998 566999998653211 112222344333 34568999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccC
Q 003221 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p 483 (838)
++|++|+.+|.|.+|+-.+.+....+++|+....+...+|
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence 9999999999999999999998888999976554444444
No 47
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=1.6e-14 Score=160.18 Aligned_cols=237 Identities=20% Similarity=0.269 Sum_probs=167.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
...-++.|.-+.|-+ | +++|++|...| +||||. ........+..|..||..++|.|.. +
T Consensus 64 ~srFk~~v~s~~fR~----D---G~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d-----------~- 123 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS----D---GRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQD-----------N- 123 (487)
T ss_pred HHhhccceeEEEeec----C---CeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccC-----------C-
Confidence 344567777777765 4 78999999988 899995 4444556677899999999999742 2
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC---eEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVA 206 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~---iLa 206 (838)
.++ +++++ +.++++||+.+......|. +...|.+.++.+. +++
T Consensus 124 -t~l-~s~sD-------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 124 -TML-VSGSD-------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred -eEE-EecCC-------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 333 34431 3789999999888644554 4569999999875 555
Q ss_pred E-EeCCeEEEEECCCC-ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCC
Q 003221 207 V-GLATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (838)
Q Consensus 207 V-~l~~~I~IwD~~t~-e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~ 284 (838)
. +.++.|++||+++. ....++. |..|. -..+++ ++
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pV------------e~vl~l-------ps----------------------- 207 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPV------------ESVLAL-------PS----------------------- 207 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCce------------eeEEEc-------CC-----------------------
Confidence 5 55778999999986 3344432 22220 112332 11
Q ss_pred CCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEE
Q 003221 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS 363 (838)
Q Consensus 285 stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~-~~v~ 363 (838)
|+++|. + .-..|+|||+.++ +.+.
T Consensus 208 ------gs~ias--------------------------------------------A-----gGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 208 ------GSLIAS--------------------------------------------A-----GGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred ------CCEEEE--------------------------------------------c-----CCCeEEEEEecCCceehh
Confidence 122221 0 0135999999955 5556
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
.+..|...|+||+|.-+++.|.+||.||+ ++|||+.. ++.++.+. -+++|.+|+.|||+
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~-----------------~Kvv~s~~---~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTN-----------------YKVVHSWK---YPGPVLSIAVSPDD 291 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccc-eEEEEccc-----------------eEEEEeee---cccceeeEEecCCC
Confidence 66669999999999999999999999887 99999732 13444442 24589999999999
Q ss_pred CEEEEEeCCCeEEEEec
Q 003221 444 QWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l 460 (838)
+.+++|-.+|.+-+=+.
T Consensus 292 ~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceEEEecccceeeeehh
Confidence 99999999999877643
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=5.2e-14 Score=161.88 Aligned_cols=124 Identities=14% Similarity=0.154 Sum_probs=96.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.|..+|.+.|||+.+...+.+++||++.|..|+.+||++.++|||. +++|++||..-... ..|+ ..++.
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-DktVkfWdf~l~~~--~~gt--------~~k~l 497 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA-DKTVKFWDFKLVVS--VPGT--------QKKVL 497 (888)
T ss_pred EeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC-CcEEEEEeEEEEec--cCcc--------cceee
Confidence 4678899999999999999999999999999999999999999999 56799999753211 1121 11211
Q ss_pred EEecc---cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCC
Q 003221 424 KLHRG---ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (838)
Q Consensus 424 ~L~RG---~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~ 478 (838)
.+..- .-...|.|+++||||++||++-.|.|||||-+++.+--.++.+|.-+|.+
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 22100 01235999999999999999999999999999999988999999643333
No 49
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-13 Score=146.37 Aligned_cols=251 Identities=13% Similarity=0.184 Sum_probs=163.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
+....|.-..|+. + +.+|+++.+ +.+||||+.+ +....++..+.=.|..++|.- .. .
T Consensus 12 ~~~~~i~sl~fs~----~---G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth-----------~~---~ 69 (311)
T KOG1446|consen 12 ETNGKINSLDFSD----D---GLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTH-----------HS---N 69 (311)
T ss_pred cCCCceeEEEecC----C---CCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEec-----------CC---c
Confidence 3567788888865 2 456666555 5899999965 555555544444466666651 11 1
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC---eEEEE
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IVAVG 208 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~---iLaV~ 208 (838)
-++.+. + ..+.+||.-++.++++++.+.-+ ..|.+++.+|. +|.++
T Consensus 70 ~~i~sS--t----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S 119 (311)
T KOG1446|consen 70 TVIHSS--T----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS 119 (311)
T ss_pred eEEEcc--C----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc
Confidence 222111 0 11368999999999999998654 58999999984 77788
Q ss_pred eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCC
Q 003221 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (838)
Q Consensus 209 l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsp 288 (838)
++++|++||++.-++..-+.....| .+ ||.+...++
T Consensus 120 ~D~tvrLWDlR~~~cqg~l~~~~~p---------------i~-------AfDp~GLif---------------------- 155 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQGLLNLSGRP---------------IA-------AFDPEGLIF---------------------- 155 (311)
T ss_pred cCCeEEeeEecCCCCceEEecCCCc---------------ce-------eECCCCcEE----------------------
Confidence 8999999999977664443321111 22 343321110
Q ss_pred CCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC--cEEEEec
Q 003221 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK 366 (838)
Q Consensus 289 s~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~--~~v~~~~ 366 (838)
| .+.....|++||+++- ..-.+|.
T Consensus 156 ------A------------------------------------------------~~~~~~~IkLyD~Rs~dkgPF~tf~ 181 (311)
T KOG1446|consen 156 ------A------------------------------------------------LANGSELIKLYDLRSFDKGPFTTFS 181 (311)
T ss_pred ------E------------------------------------------------EecCCCeEEEEEecccCCCCceeEc
Confidence 0 0112237999999863 3444444
Q ss_pred ---cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 367 ---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 367 ---aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
+-....+.|.|||||++|.-.... ..|.|.|... |. ..+-+.+..+... .--+.+|+|||
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~-------G~--------~~~tfs~~~~~~~-~~~~a~ftPds 244 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFD-------GT--------VKSTFSGYPNAGN-LPLSATFTPDS 244 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccC-------Cc--------EeeeEeeccCCCC-cceeEEECCCC
Confidence 336678999999999999988774 4599999854 41 1223333332211 12578899999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCcccccc
Q 003221 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~gg~~~~~~ 471 (838)
+++.+|++||+||||+++.......+++
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999977655544444
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.65 E-value=6e-14 Score=146.15 Aligned_cols=258 Identities=15% Similarity=0.127 Sum_probs=169.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
+|--.|+-++||+ ++ ..++.++-+...-||=.. .|+..-.+.+|.|.|.++.+.-+ ++ .|
T Consensus 8 GHERplTqiKyN~----eG--DLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~-----------s~--~l 67 (327)
T KOG0643|consen 8 GHERPLTQIKYNR----EG--DLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWD-----------SK--HL 67 (327)
T ss_pred cCccccceEEecC----CC--cEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCC-----------cc--ee
Confidence 4555678888988 21 244555555568999874 47777788999999999998732 22 33
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCC
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLAT 211 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~ 211 (838)
+.| + .+.+++|||.++|+++.++++.++|..+.|+.. +++++.++
T Consensus 68 --iTG---------------------S----------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 68 --ITG---------------------S----------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred --eec---------------------c----------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh
Confidence 222 1 237899999999999999999999999999874 66666655
Q ss_pred e------EEEEECCCCce-------eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccC
Q 003221 212 Q------IYCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (838)
Q Consensus 212 ~------I~IwD~~t~e~-------l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~ 278 (838)
+ |.+||++.... .+.+.++... -...+|.
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk----------------------------it~a~Wg---------- 156 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK----------------------------ITSALWG---------- 156 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCCccc----------------------------eeeeeec----------
Confidence 3 88999885321 1111111000 0011121
Q ss_pred CCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC
Q 003221 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (838)
Q Consensus 279 ~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s 358 (838)
++.+ .+ ..+..+|.|.+||+.+
T Consensus 157 -------------------------------------~l~~-----------------~i----i~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 157 -------------------------------------PLGE-----------------TI----IAGHEDGSISIYDART 178 (327)
T ss_pred -------------------------------------ccCC-----------------EE----EEecCCCcEEEEEccc
Confidence 1110 00 1367899999999999
Q ss_pred Cc-EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcc-------c--C-------------CCCCCcccc
Q 003221 359 RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-------R--S-------------GSGNHKYDW 415 (838)
Q Consensus 359 ~~-~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~-------~--~-------------~~G~~~~~~ 415 (838)
++ .+...+-|.+.|+.|+|+||.++++|+|.| ++-++||..+... + | +.|....+.
T Consensus 179 g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 179 GKELVDSDEEHSSKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDV 257 (327)
T ss_pred CceeeechhhhccccccccccCCcceEEecccC-ccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeee
Confidence 75 556668899999999999999999999994 5689999864210 0 0 112111111
Q ss_pred CCcceEEEEE-------------e--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 416 NSSHVHLYKL-------------H--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 416 ~~~~~~l~~L-------------~--RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+....-+| . .| |-.+|.+|+|+|||+-.++|+.||.|+|..++.
T Consensus 258 TTT~~r~GKFEArFyh~i~eEEigrvkG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 258 TTTSTRAGKFEARFYHLIFEEEIGRVKG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeecccccchhhhHHHHHHHHHhccccc-cccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 1111111111 1 13 345799999999999999999999998876653
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-14 Score=164.08 Aligned_cols=221 Identities=15% Similarity=0.257 Sum_probs=167.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+-+++|.++. ++||+.+ +.+....+..|+.-++++++-|+ .|+++. +.|
T Consensus 67 knWiv~GsDD~~IrVfnyn-t~ekV~~FeAH~DyIR~iavHPt-------------~P~vLt-sSD-------------- 117 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYN-TGEKVKTFEAHSDYIRSIAVHPT-------------LPYVLT-SSD-------------- 117 (794)
T ss_pred cceEEEecCCceEEEEecc-cceeeEEeeccccceeeeeecCC-------------CCeEEe-cCC--------------
Confidence 45688999986 9999995 45566778889999999999985 467653 211
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCC-CcEEEEEeCCC----eEEEEeCCeEEEEECCCCceeeEE
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFR-SSVCMVRCSPR----IVAVGLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg-~~V~tL~f~-s~V~sV~~s~~----iLaV~l~~~I~IwD~~t~e~l~tL 227 (838)
+-+|++||...+ .+..+++-+ .-|+.|+|+|+ +...+++.+|++|.+....+.+||
T Consensus 118 ------------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl 179 (794)
T KOG0276|consen 118 ------------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL 179 (794)
T ss_pred ------------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence 378999999766 455566544 48999999985 455577889999999999999999
Q ss_pred eecCCcccCCCCccccccccceeEEcccEEEEeCC-CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhh
Q 003221 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (838)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~-~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la 306 (838)
..|.. |.+.+.. |++. .+
T Consensus 180 ~gHek-------------GVN~Vdy------y~~gdkp------------------------------------------ 198 (794)
T KOG0276|consen 180 EGHEK-------------GVNCVDY------YTGGDKP------------------------------------------ 198 (794)
T ss_pred ecccc-------------CcceEEe------ccCCCcc------------------------------------------
Confidence 87754 2333322 2211 00
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003221 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (838)
Q Consensus 307 ~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLAT 386 (838)
| + + +|..|.+|+|||.++++++.++.+|+..|++++|.|.=.+++|
T Consensus 199 ---------y---------------------l-I---sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 199 ---------Y---------------------L-I---SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred ---------e---------------------E-E---ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 0 0 0 3467889999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003221 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (838)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhI 457 (838)
||+||+ +|||...+. ++...|--|. .+||||+-.+.++.+++|.+.|.|.|
T Consensus 245 gsEDGT-vriWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGT-VRIWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCcc-EEEecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999997 999987431 2222333333 25999999999999999999997654
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.8e-15 Score=167.44 Aligned_cols=219 Identities=14% Similarity=0.149 Sum_probs=156.3
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEeC--CCeEEEEeCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCS--PRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s--~~iLaV~l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
+.|.|||-.|...|+.++.. -+|.+.+|= ++.+++|.++ +|++|+..|++..+++..|+.- ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR 101 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR 101 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence 67999999999999999865 488888874 4577776655 8999999999999999988763 23
Q ss_pred eeEEcc---cEEEEeCC-CceeecC--CCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCC
Q 003221 249 PMAVGP---RWLAYASN-TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (838)
Q Consensus 249 ~~Alsp---r~LAys~~-~~~l~~~--G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p 322 (838)
.+++-| -.|..+++ .+.+|+- +-.-. +++.++.+-.+
T Consensus 102 ~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~------------------------------------qtfeGH~HyVM- 144 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTIKLWDWENEWACE------------------------------------QTFEGHEHYVM- 144 (794)
T ss_pred eeeecCCCCeEEecCCccEEEEeeccCceeee------------------------------------eEEcCcceEEE-
Confidence 455555 22322222 2334542 10001 12222111100
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEecCCCEEEEEecC
Q 003221 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 323 ~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdG--tlLATAS~dGt~IrVwdi~ 400 (838)
...+.+.. ...+++++-|++|+||.+.+..+..+|.+|...|+|+.|=+-| -+|.||+. +++|+|||.+
T Consensus 145 ---qv~fnPkD-----~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDyQ 215 (794)
T KOG0276|consen 145 ---QVAFNPKD-----PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDYQ 215 (794)
T ss_pred ---EEEecCCC-----ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeecc
Confidence 01111111 1124467889999999999999999999999999999999866 48999988 6779999986
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 401 p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
+- .++.+| .|+++ .|..++|.|.=-.+++||.||||+||.-.++..+..+
T Consensus 216 tk-----------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 216 TK-----------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred hH-----------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 42 466677 46554 6999999999999999999999999999888776554
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.64 E-value=1.3e-15 Score=162.56 Aligned_cols=240 Identities=16% Similarity=0.193 Sum_probs=173.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
.-+|+..|+...||. ++|+.|..+ +++|||++ +++...++-+|-..|-.+.|...
T Consensus 233 L~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~-tge~l~tlihHceaVLhlrf~ng-------------- 288 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN-TGEPLNTLIHHCEAVLHLRFSNG-------------- 288 (499)
T ss_pred hhcCCCcEEeeeccc---------eEEEecCCCceEEEEecc-CCchhhHHhhhcceeEEEEEeCC--------------
Confidence 345666777777765 588888876 69999995 68888888888889999987731
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEE---EEE-eCCCcEEEEEeCCCeEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVL-RFRSSVCMVRCSPRIVA 206 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V---~tL-~f~s~V~sV~~s~~iLa 206 (838)
+++.++ .++++.+||+.+...+ +.| .++..|..|.|+.++++
T Consensus 289 -~mvtcS---------------------------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV 334 (499)
T KOG0281|consen 289 -YMVTCS---------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 334 (499)
T ss_pred -EEEEec---------------------------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE
Confidence 443322 2478999999876532 222 35689999999999777
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
.+. +.+|++|++.|++...+|..|.-. +|. |-|-+
T Consensus 335 sASgDRTikvW~~st~efvRtl~gHkRG----------------IAC----lQYr~------------------------ 370 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNGHKRG----------------IAC----LQYRD------------------------ 370 (499)
T ss_pred EecCCceEEEEeccceeeehhhhccccc----------------cee----hhccC------------------------
Confidence 766 457999999999999888766431 111 11211
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
.+++ +|+.|.+|++||+..|.++..+
T Consensus 371 ------rlvV------------------------------------------------SGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 371 ------RLVV------------------------------------------------SGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ------eEEE------------------------------------------------ecCCCceEEEEeccccHHHHHH
Confidence 1111 3566889999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
++|..-|.|+.|+. +.+++|.-||+ |+|||+...... . ..+.-.++..+.+ +.+.|..+.|. ...
T Consensus 397 eGHEeLvRciRFd~--krIVSGaYDGk-ikvWdl~aaldp---r-----a~~~~~Cl~~lv~--hsgRVFrLQFD--~fq 461 (499)
T KOG0281|consen 397 EGHEELVRCIRFDN--KRIVSGAYDGK-IKVWDLQAALDP---R-----APASTLCLRTLVE--HSGRVFRLQFD--EFQ 461 (499)
T ss_pred hchHHhhhheeecC--ceeeeccccce-EEEEecccccCC---c-----ccccchHHHhhhh--ccceeEEEeec--ceE
Confidence 99999999999954 78999999887 999999642100 0 0001123444433 34578889884 578
Q ss_pred EEEEeCCCeEEEEecCC
Q 003221 446 IAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 446 Las~S~dGTVhIw~l~~ 462 (838)
|+++|.|.||-||++..
T Consensus 462 IvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 462 IISSSHDDTILIWDFLN 478 (499)
T ss_pred EEeccCCCeEEEEEcCC
Confidence 99999999999999864
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=9.4e-15 Score=161.88 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=174.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
..++.+.|...+|..- .+.=+++...-++|||+.. +-.+.+++++=+..|+.+.|- ....
T Consensus 22 ~~ke~~~vssl~fsp~------~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~fR-------------~DG~ 81 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPK------HPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDFR-------------SDGR 81 (487)
T ss_pred cccccCcceeEecCCC------CCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEee-------------cCCe
Confidence 3455666777777541 1234666667889999984 455667777777778888754 4445
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC---eEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVAV 207 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~---iLaV 207 (838)
||| +||.+ +.|+|+|+++...+..+. +..+|..+.|+++ .++.
T Consensus 82 Lla--aGD~s-------------------------------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 82 LLA--AGDES-------------------------------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred EEE--ccCCc-------------------------------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence 775 35532 679999988876766665 4569999999875 6666
Q ss_pred EeCCe-EEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 GLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~l~~~-I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
|.++. +++||+.+......+.+|..- + |..++.+
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~~htDY------------------V--R~g~~~~------------------------- 163 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELSGHTDY------------------V--RCGDISP------------------------- 163 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEecCCcce------------------e--Eeecccc-------------------------
Confidence 77664 789999998754455555441 0 2222211
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-EEEEe
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQF 365 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~-~v~~~ 365 (838)
.++.++ .+|++||.|++||..+.. .+..|
T Consensus 164 --~~~hiv------------------------------------------------vtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 164 --ANDHIV------------------------------------------------VTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred --CCCeEE------------------------------------------------EecCCCceEEEEEeccCCceeEEe
Confidence 111111 147899999999999874 44444
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
.|..||..+.|=|+|.++|||+ |..+||||+.. |. +.++.+ +.|+..|+|+++..|++.
T Consensus 194 -nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 194 -NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTR 252 (487)
T ss_pred -cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC-------Cc---------eehhhh--hcccceEEEEEeecCCce
Confidence 5899999999999999999998 78999999964 31 455443 335567999999999999
Q ss_pred EEEEeCCCeEEEEecCCCCC
Q 003221 446 IAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 446 Las~S~dGTVhIw~l~~~gg 465 (838)
|.++|.|+-|+||++..++-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EeecccccceEEEEccceEE
Confidence 99999999999999887764
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.6e-14 Score=148.17 Aligned_cols=246 Identities=15% Similarity=0.148 Sum_probs=173.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
+..++-|.-++||. |+ +-+|..|.+..+++|+. ..+.+.+..++|.-.|..++..- ..+ -
T Consensus 14 ~~~qgaV~avryN~----dG--nY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~-----------Dns--k 73 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNV----DG--NYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSS-----------DNS--K 73 (307)
T ss_pred cccccceEEEEEcc----CC--CEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccc-----------ccc--c
Confidence 45778899999987 42 56899999999999998 46889999999999898887662 222 2
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEE-E
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAV-G 208 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV-~ 208 (838)
++.+.+ ++.|.+||..||+.+..++-+ ..|..|+||.. +++. +
T Consensus 74 f~s~Gg---------------------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 74 FASCGG---------------------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS 120 (307)
T ss_pred cccCCC---------------------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc
Confidence 332111 378999999999999988754 69999999986 4554 4
Q ss_pred eCCeEEEEECCCC--ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 209 LATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 209 l~~~I~IwD~~t~--e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
.+..+++||-+.. +.++.|.+... +.+.+
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D---------------~V~Si---------------------------------- 151 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKD---------------GVSSI---------------------------------- 151 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcC---------------ceeEE----------------------------------
Confidence 5778999997753 22222211100 00000
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
. +++ ...+ .|+.||+++.||+..++.....-
T Consensus 152 -------~------------------v~~---------------------heIv---aGS~DGtvRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 152 -------D------------------VAE---------------------HEIV---AGSVDGTVRTYDIRKGTLSSDYF 182 (307)
T ss_pred -------E------------------ecc---------------------cEEE---eeccCCcEEEEEeecceeehhhc
Confidence 0 000 0001 35679999999999998777666
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQW 445 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a-~I~sIaFSpDg~~ 445 (838)
+| ||++++|++||..+..++.++ ++|+-|-.+ | +.|.. ..|+.+. -=.+.+|+.....
T Consensus 183 g~--pit~vs~s~d~nc~La~~l~s-tlrLlDk~t-------G----------klL~s-YkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 183 GH--PITSVSFSKDGNCSLASSLDS-TLRLLDKET-------G----------KLLKS-YKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CC--cceeEEecCCCCEEEEeeccc-eeeecccch-------h----------HHHHH-hcccccceeeeeeeeccccee
Confidence 55 999999999999999898855 599998754 4 23322 2354433 2356788888899
Q ss_pred EEEEeCCCeEEEEecCCCCCccccc
Q 003221 446 IAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 446 Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
+++||.||.|.+|+|........+.
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeec
Confidence 9999999999999997655444433
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2e-14 Score=167.18 Aligned_cols=287 Identities=16% Similarity=0.181 Sum_probs=190.4
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+-.++++.-+| ||+||-- -+.+.+-+..|||||+.|.|-|. .|+. |+|++
T Consensus 21 rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~-------------qplF--VSGGD------------- 71 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPT-------------QPLF--VSGGD------------- 71 (1202)
T ss_pred CCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCC-------------CCeE--EecCC-------------
Confidence 55788888877 8999985 46677888899999999998864 5765 45421
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t 229 (838)
+-+|++|+.++.+++.+|.- -.-|..+.|.+. +|.++.+.+|+||+-.+.+++-.+.+
T Consensus 72 ------------------DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG 133 (1202)
T KOG0292|consen 72 ------------------DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG 133 (1202)
T ss_pred ------------------ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence 36899999999999988864 479999999986 55556666899999999999988877
Q ss_pred cCCcccCCCCccccccccceeE--Ecc--cEEEEeC--CCceeecCCCCCCcccCCCCC--CCCCCCCCCcceeeeehhh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMA--VGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGV--SPSTSPGGSSLVARYAMEH 301 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~A--lsp--r~LAys~--~~~~l~~~G~vs~q~l~~~~~--s~stsps~gslva~~A~ds 301 (838)
|.-- .|+ +-| ..++.++ .++.+||.++....+..|.+. .+...+.++++... +-..
T Consensus 134 HnHY---------------VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~-~DaV 197 (1202)
T KOG0292|consen 134 HNHY---------------VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ-TDAV 197 (1202)
T ss_pred CceE---------------EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC-cCee
Confidence 6431 222 223 4555443 367899985543333222100 00000000111000 0000
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECC
Q 003221 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP 379 (838)
Q Consensus 302 ~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSP 379 (838)
.|++..| +-+ .++-.++.+-. .+ ..+|..|..|++|....-+ .+-+.++|..+|+++-|+|
T Consensus 198 VK~VLEG-------HDR------GVNwaAfhpTl-pl---iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 198 VKHVLEG-------HDR------GVNWAAFHPTL-PL---IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred eeeeecc-------ccc------ccceEEecCCc-ce---EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC
Confidence 1222222 111 11111122100 01 1257789999999987655 4678899999999999999
Q ss_pred CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 380 dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
.-.++.+.|+|++ |||||+... ..+..|+|- +..-|.|+-.|..+.+|+|-+.| +-||.
T Consensus 261 ~q~lIlSnsEDks-irVwDm~kR-----------------t~v~tfrre--ndRFW~laahP~lNLfAAgHDsG-m~VFk 319 (1202)
T KOG0292|consen 261 HQDLILSNSEDKS-IRVWDMTKR-----------------TSVQTFRRE--NDRFWILAAHPELNLFAAGHDSG-MIVFK 319 (1202)
T ss_pred ccceeEecCCCcc-EEEEecccc-----------------cceeeeecc--CCeEEEEEecCCcceeeeecCCc-eEEEE
Confidence 9999999999665 999999531 357788774 44689999999999888887766 67888
Q ss_pred cCC
Q 003221 460 LSP 462 (838)
Q Consensus 460 l~~ 462 (838)
++.
T Consensus 320 leR 322 (1202)
T KOG0292|consen 320 LER 322 (1202)
T ss_pred Ecc
Confidence 863
No 57
>PTZ00420 coronin; Provisional
Probab=99.63 E-value=2.2e-13 Score=159.81 Aligned_cols=218 Identities=12% Similarity=0.162 Sum_probs=146.8
Q ss_pred EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCC
Q 003221 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (838)
Q Consensus 86 ~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~ 165 (838)
++||+... ......+.+|.++|..++|.|. .. .+||..+.
T Consensus 56 I~L~~~~r-~~~v~~L~gH~~~V~~lafsP~----------~~--~lLASgS~--------------------------- 95 (568)
T PTZ00420 56 IRLENQMR-KPPVIKLKGHTSSILDLQFNPC----------FS--EILASGSE--------------------------- 95 (568)
T ss_pred EEeeecCC-CceEEEEcCCCCCEEEEEEcCC----------CC--CEEEEEeC---------------------------
Confidence 78998754 3345567889999999999984 11 25654221
Q ss_pred CCCCCCCCEEEEEECCCCe--------EEEEEe-CCCcEEEEEeCCC---eEEE-EeCCeEEEEECCCCceeeEEeecCC
Q 003221 166 GNCVNSPTAVRFYSFQSHC--------YEHVLR-FRSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 166 ~~~~~~p~tV~IWDl~tg~--------~V~tL~-f~s~V~sV~~s~~---iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~ 232 (838)
+++|+|||+.++. .+..+. +...|.+|+|++. +|++ +.++.|+|||+.+++...++. ++.
T Consensus 96 ------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~ 168 (568)
T PTZ00420 96 ------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK 168 (568)
T ss_pred ------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence 3789999998642 233444 4568999999984 4554 557899999999988766553 221
Q ss_pred cccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccc
Q 003221 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~kt 312 (838)
. . ..++|..+ |.+++
T Consensus 169 ~-------------V-------~Slswspd----------------------------G~lLa----------------- 183 (568)
T PTZ00420 169 K-------------L-------SSLKWNIK----------------------------GNLLS----------------- 183 (568)
T ss_pred c-------------E-------EEEEECCC----------------------------CCEEE-----------------
Confidence 1 1 11223221 11110
Q ss_pred ccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEE-----EEECCCCCEEEEE
Q 003221 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA-----LCFDPSGTLLVTA 387 (838)
Q Consensus 313 ls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsa-----LaFSPdGtlLATA 387 (838)
.+..++.|+|||+.+++.+..+.+|.+.+.+ ..|++++.+|+|+
T Consensus 184 -------------------------------t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 184 -------------------------------GTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred -------------------------------EEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 1245789999999999999999999987543 3467899999998
Q ss_pred ecCC---CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 388 SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 388 S~dG---t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+.++ +.|+|||+... + ..+..+.-......+...-+.++|.++++|+.|++|++|++..
T Consensus 233 G~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 8765 36999999631 1 2333322111223445555677799999999999999999965
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.63 E-value=4.2e-15 Score=159.70 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=177.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCC----cc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG----FR 127 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~----F~ 127 (838)
..+|+|.|....-+ +.....++..++|+.++|||+. .-++...+.-|+|.|+.|.+.-.-.+.-+.|. +.
T Consensus 62 L~gHrdGV~~lakh-----p~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKH-----PNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWK 135 (433)
T ss_pred ccccccccchhhcC-----cchhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecccceEEecCCcceeeee
Confidence 46788888754432 2222334555555669999995 46788899999999999988742211111111 11
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCC--CCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC-
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR- 203 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~--~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~- 203 (838)
-..|.+=+..++.. +.++ |-.| .+.. ...-.|.|||..--..+..+... ..|.+|+||+-
T Consensus 136 ~~~~p~~tilg~s~-----------~~gI-dh~~----~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 136 IDGPPLHTILGKSV-----------YLGI-DHHR----KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred ccCCcceeeecccc-----------cccc-cccc----ccccccccCceeeecccccCCccceeecCCCceeEEecCCCc
Confidence 00011111111100 0000 0000 0111 11245999999988999999875 58999999984
Q ss_pred --eEEEE-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCC
Q 003221 204 --IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 204 --iLaV~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
+|++| .+..|.+||+++...++.+..-.- .+.+++.|
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR--------------TN~IswnP-------------------------- 239 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILTMR--------------TNTICWNP-------------------------- 239 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeeecc--------------ccceecCc--------------------------
Confidence 78877 567899999999887766542111 12222211
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
.++.|..++.|..+..||.....
T Consensus 240 ---------------------------------------------------------eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 240 ---------------------------------------------------------EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred ---------------------------------------------------------cccceeeccccccceehhhhhhc
Confidence 01122245678889999998754
Q ss_pred -EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 361 -IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 361 -~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
.+...+.|.+.|..+.|||.|+-++|||-| .+||||.+.. | .-+.+|-..|- +.|.++.|
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-ksIRIf~~~~-------~--------~SRdiYhtkRM---q~V~~Vk~ 323 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-KSIRIFPVNH-------G--------HSRDIYHTKRM---QHVFCVKY 323 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhcccccc-ceEEEeecCC-------C--------cchhhhhHhhh---heeeEEEE
Confidence 567888999999999999999999999995 5699999853 2 11334444442 25999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCC
Q 003221 440 SHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
|.|++||.+||+|+.|++|.-...
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eccccEEEecCCCcceeeeecchh
Confidence 999999999999999999987543
No 59
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=6.2e-13 Score=140.11 Aligned_cols=268 Identities=13% Similarity=0.089 Sum_probs=158.5
Q ss_pred eEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 76 ~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
.+++++..+ .+.+||++ ++++...+..+.+ +..+.+.|+. ..|+++..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~-~~~l~~~~dg-------------~~l~~~~~~--------------- 51 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFPVGQR-PRGITLSKDG-------------KLLYVCASD--------------- 51 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEECCCC-CCceEECCCC-------------CEEEEEECC---------------
Confidence 355565554 59999995 4556666665544 5667887642 234332211
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEE--eCCeEEEEECCCCceeeEEeec
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVG--LATQIYCFDALTLENKFSVLTY 230 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~--l~~~I~IwD~~t~e~l~tL~t~ 230 (838)
.++|++||+.+++.+..+.....+..+.++++ .|+++ .++.|++||+.+.+.+..+...
T Consensus 52 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 52 -----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred -----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 26899999999998888776656677788764 55543 3568999999988766555421
Q ss_pred CCcccCCCCccccccccceeEEcc--cEEEEeCCC---ceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT---LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 231 p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~---~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
.. ...+++++ ++|++.... ...|+... +.++...
T Consensus 115 ~~--------------~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-------------------~~~~~~~-------- 153 (300)
T TIGR03866 115 VE--------------PEGMAVSPDGKIVVNTSETTNMAHFIDTKT-------------------YEIVDNV-------- 153 (300)
T ss_pred CC--------------cceEEECCCCCEEEEEecCCCeEEEEeCCC-------------------CeEEEEE--------
Confidence 11 12355554 555554321 12223110 0000000
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-----CC--eEEEEEC
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----SP--ISALCFD 378 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~-----sp--IsaLaFS 378 (838)
..........+++.++.+.+ .+..+|.|.+||+.+++.+..+..+. .. ...++|+
T Consensus 154 ---------------~~~~~~~~~~~s~dg~~l~~---~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 154 ---------------LVDQRPRFAEFTADGKELWV---SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred ---------------EcCCCccEEEECCCCCEEEE---EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 00000011111222222211 23467899999999988777665332 11 2468899
Q ss_pred CCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEE
Q 003221 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHV 457 (838)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~-S~dGTVhI 457 (838)
|+|++++.+......|.|||+.. + +.+..+..| ..+.+++|+|||++|+++ ..+|+|+|
T Consensus 216 ~dg~~~~~~~~~~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v 275 (300)
T TIGR03866 216 KDGKTAFVALGPANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSV 275 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEE
Confidence 99998665543344599999853 2 233333323 258899999999999886 46899999
Q ss_pred EecCCCCCcccc
Q 003221 458 FVLSPFGGDSGF 469 (838)
Q Consensus 458 w~l~~~gg~~~~ 469 (838)
|++........+
T Consensus 276 ~d~~~~~~~~~~ 287 (300)
T TIGR03866 276 IDVAALKVIKSI 287 (300)
T ss_pred EECCCCcEEEEE
Confidence 999875543333
No 60
>PTZ00421 coronin; Provisional
Probab=99.62 E-value=3.1e-13 Score=156.96 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=161.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC------ceeEEeeeccCcEEEEEEecCCCCCCCCCC
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g------~v~ells~hdg~V~~l~~lP~p~~~~~~d~ 125 (838)
.+|++.|.-+.|+..+ +++|++|..+ .++|||+...+ .....+..|...|.+|+|.|..
T Consensus 72 ~GH~~~V~~v~fsP~d------~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-------- 137 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFD------PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-------- 137 (493)
T ss_pred eCCCCCEEEEEEcCCC------CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--------
Confidence 4578889988886521 3456666655 59999996532 2345677899999999999742
Q ss_pred cccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC-
Q 003221 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR- 203 (838)
Q Consensus 126 F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~- 203 (838)
..+|+..+ + +++|+|||+++++.+..+. +...|.+++++++
T Consensus 138 ----~~iLaSgs-----------------------~----------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 138 ----MNVLASAG-----------------------A----------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred ----CCEEEEEe-----------------------C----------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 13555422 1 3789999999999988886 4568999999875
Q ss_pred -eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCC
Q 003221 204 -IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~ 281 (838)
+|+++. ++.|+|||+++++.+.++..|.... ...+. +..+
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~-------w~~~------------------- 222 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQRCL-------WAKR------------------- 222 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceEEE-------EcCC-------------------
Confidence 666655 6689999999998877766543310 00011 1110
Q ss_pred CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-
Q 003221 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA- 360 (838)
Q Consensus 282 ~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~- 360 (838)
++.+++ .+.+...++.|+|||+.+..
T Consensus 223 --------~~~ivt---------------------------------------------~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 223 --------KDLIIT---------------------------------------------LGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred --------CCeEEE---------------------------------------------EecCCCCCCeEEEEeCCCCCC
Confidence 000000 00023458999999998754
Q ss_pred EEEEeccCC-CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 361 IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 361 ~v~~~~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
.+..+..|. ..+....|+++|.+|++++..+..|++||+.. + ..++.+. ......+..++|
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-------~----------~~~~~~~-~~s~~~~~g~~~ 311 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-------E----------RLTFCSS-YSSVEPHKGLCM 311 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-------C----------ceEEEee-ccCCCCCcceEe
Confidence 344444343 45667789999999999986344699999964 2 2333222 223345788999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCC
Q 003221 440 SHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.| ++-+-...-.-.++|.|...
T Consensus 312 ~p--k~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 312 MP--KWSLDTRKCEIARFYALTYH 333 (493)
T ss_pred cc--cccccccceeeeEEEEecCC
Confidence 98 44455555556788888643
No 61
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.5e-14 Score=151.49 Aligned_cols=238 Identities=18% Similarity=0.271 Sum_probs=150.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLa 134 (838)
+...|+-..|-- + .+++..|.++.++++|++ +++ ...+..|+++|++|+..+. .. .+
T Consensus 53 ~~~plL~c~F~d----~---~~~~~G~~dg~vr~~Dln-~~~-~~~igth~~~i~ci~~~~~-----------~~--~v- 109 (323)
T KOG1036|consen 53 HGAPLLDCAFAD----E---STIVTGGLDGQVRRYDLN-TGN-EDQIGTHDEGIRCIEYSYE-----------VG--CV- 109 (323)
T ss_pred cCCceeeeeccC----C---ceEEEeccCceEEEEEec-CCc-ceeeccCCCceEEEEeecc-----------CC--eE-
Confidence 445556555532 1 356777777778888884 343 4567778888888888742 11 22
Q ss_pred EEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEe-CCeE
Q 003221 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQI 213 (838)
Q Consensus 135 vV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l-~~~I 213 (838)
+ .|+|| ++|++||.+....+.++.-...|+++..+.++|+||. +.+|
T Consensus 110 -I---------------------sgsWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 110 -I---------------------SGSWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKV 157 (323)
T ss_pred -E---------------------EcccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceE
Confidence 2 26787 8999999998777777766779999999999999855 5589
Q ss_pred EEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCC-Cceee-cC-CCCCCcccCCCCCCCCCCCCC
Q 003221 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN-TLLLS-NS-GRLSPQNLTPSGVSPSTSPGG 290 (838)
Q Consensus 214 ~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~-~~~l~-~~-G~vs~q~l~~~~~s~stsps~ 290 (838)
.+||+++++..++..+.+.+ ...|.++.-++ ...+. +. ||+..+.+.+.
T Consensus 158 ~iyDLRn~~~~~q~reS~lk------------------yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s---------- 209 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLK------------------YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS---------- 209 (323)
T ss_pred EEEEcccccchhhhccccce------------------eEEEEEEEecCCCceEEEeecceEEEEccCCc----------
Confidence 99999999876655443332 22355553222 11111 11 33322222110
Q ss_pred CcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC
Q 003221 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS 370 (838)
Q Consensus 291 gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~s 370 (838)
+-++. |++...|+... .++.-. -.
T Consensus 210 -------------~~~~s--kkyaFkCHr~~-------------------------~~~~~~----------------~y 233 (323)
T KOG1036|consen 210 -------------EEAQS--KKYAFKCHRLS-------------------------EKDTEI----------------IY 233 (323)
T ss_pred -------------hHHhh--hceeEEeeecc-------------------------cCCceE----------------EE
Confidence 00000 12222222100 011111 13
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
||++|+|+|--..||||+.||- |.+||+.+. +.+.+|.+- ...|-+++|+.||..||+++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~r-----------------Krl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGI-VNIWDLFNR-----------------KRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EeceeEeccccceEEecCCCce-EEEccCcch-----------------hhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 9999999998888999999885 899999642 566777543 23599999999999999998
Q ss_pred C
Q 003221 451 S 451 (838)
Q Consensus 451 ~ 451 (838)
+
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=6.1e-14 Score=143.96 Aligned_cols=209 Identities=16% Similarity=0.109 Sum_probs=153.0
Q ss_pred eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEE
Q 003221 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (838)
Q Consensus 98 ~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~I 177 (838)
..++..++|+|+.+++.-++ + +.+. +| ++++|++
T Consensus 10 ~~~l~~~qgaV~avryN~dG-----------n--Y~lt-cG--------------------------------sdrtvrL 43 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDG-----------N--YCLT-CG--------------------------------SDRTVRL 43 (307)
T ss_pred ceeecccccceEEEEEccCC-----------C--EEEE-cC--------------------------------CCceEEe
Confidence 35778899999999988432 2 4322 22 2489999
Q ss_pred EECCCCeEEEEEeCCC-cEEEEEeCCC--eEE-EEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEc
Q 003221 178 YSFQSHCYEHVLRFRS-SVCMVRCSPR--IVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (838)
Q Consensus 178 WDl~tg~~V~tL~f~s-~V~sV~~s~~--iLa-V~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Als 253 (838)
|+...|.+++++.-++ +|++++.+.+ .++ .+.+..|++||+.|++.++.+.+|... .+.+
T Consensus 44 WNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------VNtV--- 107 (307)
T KOG0316|consen 44 WNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------VNTV--- 107 (307)
T ss_pred ecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------eeEE---
Confidence 9999999999997664 8999988664 444 455678999999999999988887542 2333
Q ss_pred ccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCC
Q 003221 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (838)
Q Consensus 254 pr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~ 333 (838)
+|.... ++++
T Consensus 108 ----~fNees----------------------------SVv~-------------------------------------- 117 (307)
T KOG0316|consen 108 ----RFNEES----------------------------SVVA-------------------------------------- 117 (307)
T ss_pred ----EecCcc----------------------------eEEE--------------------------------------
Confidence 332210 1111
Q ss_pred ccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCC
Q 003221 334 VWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (838)
Q Consensus 334 ~~k~~~~~~~~g~~~G~V~VwDl~s~--~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~ 411 (838)
+++.|..|++||..+. +++..|..-...|.++.. .+..++++|.||+ +|.||+.. |
T Consensus 118 ----------SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGt-vRtydiR~-------G-- 175 (307)
T KOG0316|consen 118 ----------SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT-VRTYDIRK-------G-- 175 (307)
T ss_pred ----------eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCc-EEEEEeec-------c--
Confidence 2456788999999864 567788777888988877 4678999999997 99999964 4
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 412 ~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
...-.. -| .+|+|++||+|++.+.+++.++|+|+-|-++.+......+|
T Consensus 176 --------~l~sDy-~g---~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 176 --------TLSSDY-FG---HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred --------eeehhh-cC---CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 122121 23 37999999999999999999999999887765544444555
No 63
>PTZ00420 coronin; Provisional
Probab=99.60 E-value=7.9e-13 Score=155.16 Aligned_cols=251 Identities=10% Similarity=0.154 Sum_probs=158.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc-------eeEEeeeccCcEEEEEEecCCCCCCCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN-------FNELVSKRDGPVSFLQMQPFPVKDDGC 123 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~-------v~ells~hdg~V~~l~~lP~p~~~~~~ 123 (838)
..+|++.|..+.|..- .+.+|++|..+| ++|||+...+. ....+..|.+.|.+++|.|+.
T Consensus 70 L~gH~~~V~~lafsP~------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------ 137 (568)
T PTZ00420 70 LKGHTSSILDLQFNPC------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------ 137 (568)
T ss_pred EcCCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------
Confidence 4567888888888641 134677776665 99999964332 123567889999999999852
Q ss_pred CCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC
Q 003221 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR 203 (838)
Q Consensus 124 d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~ 203 (838)
..+|+..+. +++|+|||+++++.+..+.+...|.++.|+++
T Consensus 138 ------~~iLaSgS~---------------------------------DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd 178 (568)
T PTZ00420 138 ------YYIMCSSGF---------------------------------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178 (568)
T ss_pred ------CeEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence 123433221 37899999999999888888889999999875
Q ss_pred --eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEE-EEeCCCceeecCCCCCCcccCC
Q 003221 204 --IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWL-AYASNTLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 204 --iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~L-Ays~~~~~l~~~G~vs~q~l~~ 279 (838)
+|+++. +++|+|||+++++.+.++..|... ....++ |+ .++++
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~-------------~~s~~v---~~~~fs~d----------------- 225 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG-------------KNTKNI---WIDGLGGD----------------- 225 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccCC-------------ceeEEE---EeeeEcCC-----------------
Confidence 677655 668999999999988877665431 111111 11 11111
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC-
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT- 358 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s- 358 (838)
++.++. .+.+...++.|+|||+.+
T Consensus 226 ----------~~~IlT---------------------------------------------tG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 226 ----------DNYILS---------------------------------------------TGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred ----------CCEEEE---------------------------------------------EEcCCCCccEEEEEECCCC
Confidence 000000 000122346899999985
Q ss_pred CcEEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003221 359 RAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (838)
Q Consensus 359 ~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~s 436 (838)
.+.+..+. .+.+.+...-+.++|.++++|+.|+ +||+|++.. + .++.|....+...+.+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~-tIr~~e~~~-------~-----------~~~~l~~~~s~~p~~g 311 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG-NCRYYQHSL-------G-----------SIRKVNEYKSCSPFRS 311 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCC-eEEEEEccC-------C-----------cEEeecccccCCCccc
Confidence 44555443 3344455555566799999998865 599999954 2 3444444444457889
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 437 ICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 437 IaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
++|.|+- .+=...-.-.++|.+..
T Consensus 312 ~~f~Pkr--~~dv~~cEi~R~~kl~~ 335 (568)
T PTZ00420 312 FGFLPKQ--ICDVYKCEIGRVYKNEN 335 (568)
T ss_pred eEEcccc--ccCchhhhHhHHhhhcC
Confidence 9999963 22222223345555543
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.59 E-value=2.3e-13 Score=147.30 Aligned_cols=249 Identities=17% Similarity=0.190 Sum_probs=167.9
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEE-ecCCCCCCCCCCcccCCcEEEEEECCCCC-------cCC
Q 003221 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQM-QPFPVKDDGCEGFRKLHPFLLVVAGEDTN-------TLA 145 (838)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~-lP~p~~~~~~d~F~~srpLLavV~~d~t~-------~~~ 145 (838)
.+.+|..+|++..+|||. .|++..++.+|.+++..+.+ .+++... +++..+.|.+. +..
T Consensus 115 ~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~-----------~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSC-----------LFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccc-----------eEEEecCCceEEEEEecCchh
Confidence 367888888888999998 58899999999999995554 5554310 11111111110 000
Q ss_pred --CCC--CCCCCCCc------------ccCccCCCCCCCCCCCCEEEEEECC-------------------------CCe
Q 003221 146 --PGQ--NRSHLGGV------------RDGMMDSQSGNCVNSPTAVRFYSFQ-------------------------SHC 184 (838)
Q Consensus 146 --~~~--~~~~~~~~------------~~gs~d~~~~~~~~~p~tV~IWDl~-------------------------tg~ 184 (838)
... ..+|-.++ +.|+|| ++|.||+.. ++.
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D----------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD----------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeeccc----------ceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 000 01232222 667777 899999921 122
Q ss_pred EEEEEe-CCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeC
Q 003221 185 YEHVLR-FRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS 261 (838)
Q Consensus 185 ~V~tL~-f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~ 261 (838)
.+.+|. +..+|.+|.+++. .+.++.+.+|+.||+.++.+.-++.+... .+.+ +|.+
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i-------~~~~ 310 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCI-------SYSP 310 (423)
T ss_pred ceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcc--------------eeEe-------eccc
Confidence 334443 4579999999875 55567788999999999998877766322 1222 2222
Q ss_pred CCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCcccccccc
Q 003221 262 NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA 341 (838)
Q Consensus 262 ~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~ 341 (838)
... + ++
T Consensus 311 ~~~----------------------------L-----------l~----------------------------------- 316 (423)
T KOG0313|consen 311 LSK----------------------------L-----------LA----------------------------------- 316 (423)
T ss_pred ccc----------------------------e-----------ee-----------------------------------
Confidence 100 0 00
Q ss_pred ccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 342 GADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 342 ~~~g~~~G~V~VwDl~s~~---~v~~~~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
.+..|..++|||-.++. +..+|.+|+.-|.++.++|.. .+|+++|.|++ +++||+...
T Consensus 317 --~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~--------------- 378 (423)
T KOG0313|consen 317 --SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST--------------- 378 (423)
T ss_pred --ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC---------------
Confidence 23457789999988653 567899999999999999964 57788888765 999999642
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
...||.+.+. ...|.++.|. ++..|++|+.|.+++||.-.+
T Consensus 379 -k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 379 -KAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred -CCcceeeccC--CceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 1378998753 5579999998 577999999999999998554
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.3e-14 Score=165.40 Aligned_cols=212 Identities=14% Similarity=0.200 Sum_probs=154.7
Q ss_pred CEEEEEECCCCeEEEEE-eCCCcEEEEEeCCC--eEEEEeCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSPR--IVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL-~f~s~V~sV~~s~~--iLaV~l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
++|++||-+-+.+++.+ ++.++|.+|.|.++ +++.|.++ .|++|+..+.+++++|.+|-.- .
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------V- 96 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------V- 96 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------e-
Confidence 68999999999999888 46789999999986 66666655 7999999999999999877541 0
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
|.+.|-.. +|
T Consensus 97 ------Rt~~FHhe----------------------------------------------------------yP------ 106 (1202)
T KOG0292|consen 97 ------RTVFFHHE----------------------------------------------------------YP------ 106 (1202)
T ss_pred ------EEeeccCC----------------------------------------------------------Cc------
Confidence 22222110 11
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC--
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-- 406 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~-- 406 (838)
|- .+++.|.+|+||+..+.++++.+.+|.+.|.|.+|.|...++++||-|- +||||||.-..-.+
T Consensus 107 ------WI------lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ-TVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 107 ------WI------LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ-TVRVWDISGLRKKNKA 173 (1202)
T ss_pred ------eE------EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc-eEEEEeecchhccCCC
Confidence 11 0246789999999999999999999999999999999999999999955 59999994211111
Q ss_pred -C------CCC-CccccCCc--ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC--ccccccCCC
Q 003221 407 -G------SGN-HKYDWNSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG--DSGFQTLSS 474 (838)
Q Consensus 407 -~------~G~-~~~~~~~~--~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg--~~~~~~H~~ 474 (838)
+ .|. .+.++-++ ..-.+.| .|+++ .|.=++|.|.--.|++|++|.-|++|.++..+- ..+.++|..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeee-ccccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 1 000 01111111 1111223 46655 488899999999999999999999999987764 445689977
Q ss_pred CCCCCcccC
Q 003221 475 QGGDPYLFP 483 (838)
Q Consensus 475 ~~~~~~~~p 483 (838)
.|.+...+|
T Consensus 252 nVssvlfhp 260 (1202)
T KOG0292|consen 252 NVSSVLFHP 260 (1202)
T ss_pred CcceEEecC
Confidence 777766666
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-13 Score=156.33 Aligned_cols=240 Identities=19% Similarity=0.209 Sum_probs=172.5
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEE
Q 003221 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (838)
Q Consensus 56 ~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLa 134 (838)
.+.|+-+.+.. .++.|++|+.+| ++|||+......+.+...|.+.|.++++... .|
T Consensus 217 ~~~vtSv~ws~-------~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~---------------~l- 273 (484)
T KOG0305|consen 217 EELVTSVKWSP-------DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS---------------VL- 273 (484)
T ss_pred CCceEEEEECC-------CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc---------------eE-
Confidence 56666666654 378999999998 8999998766666655558999999998831 22
Q ss_pred EEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEE-Ee-CCCcEEEEEeCCC--eEEEEe-
Q 003221 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV-LR-FRSSVCMVRCSPR--IVAVGL- 209 (838)
Q Consensus 135 vV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~t-L~-f~s~V~sV~~s~~--iLaV~l- 209 (838)
. +|. -.+++.++|++..+.+.. +. +...|+.++++++ .||.+.
T Consensus 274 s-sGs-------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 274 S-SGS-------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred E-Eec-------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 2 221 126799999998876555 54 4579999999886 888865
Q ss_pred CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps 289 (838)
|+.++|||..+.+.++++..|... + +.||+++- ..
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aA-------------V-------KA~awcP~-----q~-------------------- 356 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAA-------------V-------KALAWCPW-----QS-------------------- 356 (484)
T ss_pred ccceEeccCCCccccEEEecccee-------------e-------eEeeeCCC-----cc--------------------
Confidence 668999999888888888776542 1 23343331 10
Q ss_pred CCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC
Q 003221 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 369 (838)
Q Consensus 290 ~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~ 369 (838)
.++| . + .|..|+.|++||..+++.+..+.. .
T Consensus 357 --~lLA-----------s---------------------------------G--GGs~D~~i~fwn~~~g~~i~~vdt-g 387 (484)
T KOG0305|consen 357 --GLLA-----------T---------------------------------G--GGSADRCIKFWNTNTGARIDSVDT-G 387 (484)
T ss_pred --CceE-----------E---------------------------------c--CCCcccEEEEEEcCCCcEeccccc-C
Confidence 0111 0 1 256789999999999988776654 4
Q ss_pred CCeEEEEECCCCCEEEEE-ecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 370 SPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 370 spIsaLaFSPdGtlLATA-S~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
+.|..|.|++..+-|+++ +.-...|.||+... ...+..+ -|+ ...|..+++||||+.|++
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-----------------~~~~~~l-~gH-~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-----------------MKLVAEL-LGH-TSRVLYLALSPDGETIVT 448 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----------------cceeeee-cCC-cceeEEEEECCCCCEEEE
Confidence 689999999998655554 33334699999832 1344454 354 457999999999999999
Q ss_pred EeCCCeEEEEecCCC
Q 003221 449 VSSKGTCHVFVLSPF 463 (838)
Q Consensus 449 ~S~dGTVhIw~l~~~ 463 (838)
++.|+|+++|++-+.
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999999765
No 67
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.58 E-value=2.4e-13 Score=143.65 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=173.2
Q ss_pred CCCcEEEEEEeeccCCC-----C----------CCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCC
Q 003221 55 LKDQVTWAGFDRLEYGP-----S----------VFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVK 119 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~-----~----------~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~ 119 (838)
++.-++|--|+.||.-. + ....+|.+|.|..|++||++ +|.+..-+..|.+-|+.+. |.
T Consensus 68 Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~~rk~k~h~~~vNs~~--p~--- 141 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKRIRKHKGHTSFVNSLD--PS--- 141 (338)
T ss_pred cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-cceeeehhccccceeeecC--cc---
Confidence 44557777666554311 0 13567778888899999996 5767666677777777776 32
Q ss_pred CCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEE
Q 003221 120 DDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVR 199 (838)
Q Consensus 120 ~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~ 199 (838)
.|-+.+|.++. .+++++|||+|+.+.+++++-...+.+|.
T Consensus 142 ---------rrg~~lv~Sgs-------------------------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 142 ---------RRGPQLVCSGS-------------------------------DDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred ---------ccCCeEEEecC-------------------------------CCceEEEEeecccchhhccccceeEEEEE
Confidence 11122233321 24899999999999999998888999999
Q ss_pred eCCC---eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcc
Q 003221 200 CSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (838)
Q Consensus 200 ~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~ 276 (838)
|+.. .+..+-++.|++||++..+.++++.+|..+ ..-+++++
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt-------------It~lsls~---------------------- 226 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT-------------ITGLSLSR---------------------- 226 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCc-------------eeeEEecc----------------------
Confidence 9753 666677889999999999999999888765 11232211
Q ss_pred cCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 003221 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (838)
Q Consensus 277 l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl 356 (838)
.+ +. + . +-.-|.+|++||+
T Consensus 227 ------------~g-s~---------------------------l--------l-------------snsMd~tvrvwd~ 245 (338)
T KOG0265|consen 227 ------------YG-SF---------------------------L--------L-------------SNSMDNTVRVWDV 245 (338)
T ss_pred ------------CC-Cc---------------------------c--------c-------------cccccceEEEEEe
Confidence 00 00 0 0 0122568999999
Q ss_pred CC----CcEEEEeccCCC----CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 357 VT----RAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 357 ~s----~~~v~~~~aH~s----pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
.- .+++..|.+|.. .....+++|+++.+..+|. ++.+.|||... ...+|+|- |
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-dr~vyvwd~~~-----------------r~~lyklp-G 306 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-DRFVYVWDTTS-----------------RRILYKLP-G 306 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-cceEEEeeccc-----------------ccEEEEcC-C
Confidence 74 356888988754 3466889999999998888 56799999842 15889884 5
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
+ ...|.++.|.|....|.++++|.||.+=.
T Consensus 307 h-~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 307 H-YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred c-ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 4 35799999999999999999999998643
No 68
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-12 Score=136.67 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=169.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC--CceeEEee-eccCcEEEEEEecCCCCCCCCCCcc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA--SNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~--g~v~ells-~hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
.+++|+++-.+.|.. . .+.+|++|..+ .++||++... =.++.+++ .|.-.|+.+++.|.+
T Consensus 10 ~~gh~~r~W~~awhp----~--~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g---------- 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHP----G--KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG---------- 73 (312)
T ss_pred ecCCCCcEEEEEecc----C--CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC----------
Confidence 567889888777765 1 14578877765 5999999642 23455553 466789999999853
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCC--CeEEEEEeC-CCcEEEEEeCCC-
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS--HCYEHVLRF-RSSVCMVRCSPR- 203 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~t--g~~V~tL~f-~s~V~sV~~s~~- 203 (838)
.+||.. ++| .++.||.-.. .+++.+|+- .++|.+|+++++
T Consensus 74 ---~~La~a-----------------------SFD----------~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 74 ---RYLASA-----------------------SFD----------ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred ---cEEEEe-----------------------ecc----------ceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 266642 233 7899997654 478888875 479999999874
Q ss_pred -eEEEEeC-CeEEEEECCCCce---eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccC
Q 003221 204 -IVAVGLA-TQIYCFDALTLEN---KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (838)
Q Consensus 204 -iLaV~l~-~~I~IwD~~t~e~---l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~ 278 (838)
+||.|.- ..|.||.+..... .-.|..|..- + + ..+|+
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD---------V-----------K--------~V~WH---------- 159 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD---------V-----------K--------HVIWH---------- 159 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc---------c-----------c--------EEEEc----------
Confidence 9998874 5799999874432 2222222210 0 0 01122
Q ss_pred CCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC
Q 003221 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (838)
Q Consensus 279 ~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s 358 (838)
|.- .+ + .++++|.+|++|+-..
T Consensus 160 ---------Pt~-dl--------------------------------------------L----~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 160 ---------PTE-DL--------------------------------------------L----FSCSYDNTIKVYRDED 181 (312)
T ss_pred ---------CCc-ce--------------------------------------------e----EEeccCCeEEEEeecC
Confidence 000 00 0 0356889999998773
Q ss_pred ---CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCc-cccC------------------
Q 003221 359 ---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWN------------------ 416 (838)
Q Consensus 359 ---~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~-~~~~------------------ 416 (838)
-.++++|.+|...|.+++|+|.|..|++|+.|++ ++||.....-..-.++... .+|.
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKE 260 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEe
Confidence 3578999999999999999999999999999776 9999843211000000000 0111
Q ss_pred ------CcceEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecC
Q 003221 417 ------SSHVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 417 ------~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~ 461 (838)
+...++++. .+.|.-.|.+|.|.|. ...|+++++||+|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111122221 2334447999999995 7899999999999999875
No 69
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=151.68 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=86.5
Q ss_pred cCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc----CCCCCC------
Q 003221 345 MDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SGSGNH------ 411 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~----~~~G~~------ 411 (838)
|...|.|.+|++++|-....| ++|..+|..|+.+--+++++||+.+|. ++.||....... -+....
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 566899999999999988888 699999999999999999999999886 999998542100 000000
Q ss_pred -----ccccCCcceEEEEE--------ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 412 -----KYDWNSSHVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 412 -----~~~~~~~~~~l~~L--------~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
........-.++.. .+|+. ..|++++|||||+||++++.|+||++|||.+...
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 00000000111111 14654 4799999999999999999999999999977544
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.55 E-value=6.4e-13 Score=158.61 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=140.3
Q ss_pred EEEEEe-CCCcEEEEEeCCC--eEE-EEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEE
Q 003221 185 YEHVLR-FRSSVCMVRCSPR--IVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLA 258 (838)
Q Consensus 185 ~V~tL~-f~s~V~sV~~s~~--iLa-V~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LA 258 (838)
.+..|. +.+.|.+|.++++ +|| ++.++.|.|||..+++++..+..|... +.-+++.| +|+|
T Consensus 121 ~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~-------------VKGvs~DP~Gky~A 187 (942)
T KOG0973|consen 121 VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL-------------VKGVSWDPIGKYFA 187 (942)
T ss_pred EEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc-------------ccceEECCccCeee
Confidence 455554 4579999999986 555 466889999999999999999988764 22356777 9999
Q ss_pred EeCC--CceeecCCCCCCcccC-CCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCcc
Q 003221 259 YASN--TLLLSNSGRLSPQNLT-PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 335 (838)
Q Consensus 259 ys~~--~~~l~~~G~vs~q~l~-~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~ 335 (838)
.-++ .+.+|.+..-..++.. .|-.. + -++-|+ ...+.+|++
T Consensus 188 SqsdDrtikvwrt~dw~i~k~It~pf~~---~------------------------~~~T~f---------~RlSWSPDG 231 (942)
T KOG0973|consen 188 SQSDDRTLKVWRTSDWGIEKSITKPFEE---S------------------------PLTTFF---------LRLSWSPDG 231 (942)
T ss_pred eecCCceEEEEEcccceeeEeeccchhh---C------------------------CCccee---------eecccCCCc
Confidence 7543 5678875432111111 01000 0 011111 122333444
Q ss_pred ccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC--------CC---------EEEEEecCCCEEEEEe
Q 003221 336 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------GT---------LLVTASVYGNNINIFR 398 (838)
Q Consensus 336 k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd--------Gt---------lLATAS~dGt~IrVwd 398 (838)
+.++.+.+.-...-.+.|.+-.+-+.-..|.+|..|+.+++|+|. |+ .+|+||.|++ |-||.
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~ 310 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWN 310 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-EEEEe
Confidence 544443322223446888888887888899999999999999993 21 5788888665 99998
Q ss_pred cCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 399 i~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.... +.++..+ ...+..|.+++|||||.-|.++|.||||.++.++..
T Consensus 311 T~~~-----------------RPl~vi~-~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 311 TALP-----------------RPLFVIH-NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCC-----------------Cchhhhh-hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7321 3333322 123457999999999999999999999999998653
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.2e-13 Score=148.07 Aligned_cols=274 Identities=17% Similarity=0.225 Sum_probs=174.2
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEe---eeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 56 ~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ell---s~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
...|+-+.|-. ....+|+.|+++.++||.++ |++...+ -...-|+.+++|.|++.... -+.+-|++
T Consensus 213 ~~~I~sv~FHp------~~plllvaG~d~~lrifqvD--Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i---~~s~rrky 281 (514)
T KOG2055|consen 213 HGGITSVQFHP------TAPLLLVAGLDGTLRIFQVD--GKVNPKLQSIHLEKFPIQKAEFAPNGHSVI---FTSGRRKY 281 (514)
T ss_pred cCCceEEEecC------CCceEEEecCCCcEEEEEec--CccChhheeeeeccCccceeeecCCCceEE---EecccceE
Confidence 44566666643 23567888888889999995 4444333 23468999999999764110 02222333
Q ss_pred EEEEECCCCC--cCCC----CC----C--CCCCCC-cccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEE
Q 003221 133 LLVVAGEDTN--TLAP----GQ----N--RSHLGG-VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVR 199 (838)
Q Consensus 133 LavV~~d~t~--~~~~----~~----~--~~~~~~-~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~ 199 (838)
+-+.-....+ .... -+ . .+|.+. ++-. .--+-|.|-..+|++.+.+++..+.|.++.
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~----------G~~G~I~lLhakT~eli~s~KieG~v~~~~ 351 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA----------GNNGHIHLLHAKTKELITSFKIEGVVSDFT 351 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc----------ccCceEEeehhhhhhhhheeeeccEEeeEE
Confidence 3322111100 0000 00 0 001111 0111 122679999999999999999999999999
Q ss_pred eCCC---eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEE--cccEEEEeCCCceeecCCCCCC
Q 003221 200 CSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV--GPRWLAYASNTLLLSNSGRLSP 274 (838)
Q Consensus 200 ~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Al--spr~LAys~~~~~l~~~G~vs~ 274 (838)
|+.+ +++++..++|++||+++..++++...... +....+|. .++|||
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~------------v~gts~~~S~ng~ylA---------------- 403 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS------------VHGTSLCISLNGSYLA---------------- 403 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc------------cceeeeeecCCCceEE----------------
Confidence 9765 77778888999999999988887654211 00111221 112222
Q ss_pred cccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEE
Q 003221 275 QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVK 354 (838)
Q Consensus 275 q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~Vw 354 (838)
.|+..|.|.||
T Consensus 404 ---------------------------------------------------------------------~GS~~GiVNIY 414 (514)
T KOG2055|consen 404 ---------------------------------------------------------------------TGSDSGIVNIY 414 (514)
T ss_pred ---------------------------------------------------------------------eccCcceEEEe
Confidence 24566788888
Q ss_pred ECCC------CcEEEEeccCCCCeEEEEECCCCCEEEEEecC-CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 355 DFVT------RAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 355 Dl~s------~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d-Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
|..+ .+++..+..-+..|+.|+|+||+++||.||.. ...+|+-.+ |. -++..+|...
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS------~TVFsNfP~~--------- 478 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PS------CTVFSNFPTS--------- 478 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cc------eeeeccCCCC---------
Confidence 8653 45677777778899999999999999999963 234788777 32 1122233222
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+.+-..|+|++|||.|-+||.|...|.||+|.|..|
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 222235899999999999999999999999999754
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.53 E-value=8.8e-12 Score=134.63 Aligned_cols=299 Identities=18% Similarity=0.233 Sum_probs=180.6
Q ss_pred CeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+++++|.. +---||++. ++++.-.+-+|...|.++.|. |. ..|||. ||
T Consensus 76 ~~l~aTGGgDD~AflW~~~-~ge~~~eltgHKDSVt~~~Fs-----------hd--gtlLAT--Gd-------------- 125 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDIS-TGEFAGELTGHKDSVTCCSFS-----------HD--GTLLAT--GD-------------- 125 (399)
T ss_pred CceEEecCCCceEEEEEcc-CCcceeEecCCCCceEEEEEc-----------cC--ceEEEe--cC--------------
Confidence 455555554 457899995 466666677788899999987 33 347654 32
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+ .++|+||...++.....+... +.|.=+++.|+ +|+.|. ++.|.+|.+......+.+..
T Consensus 126 -------m----------sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 126 -------M----------SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred -------C----------CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 1 378999999999998888633 45666777876 666655 56799999998766666666
Q ss_pred cCCcccCCCCccccccccceeEE-cccEE-EEeCCCceeecC--CCC-----CCcccCCCCCCCCCCCCCCcceeeeehh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAV-GPRWL-AYASNTLLLSNS--GRL-----SPQNLTPSGVSPSTSPGGSSLVARYAME 300 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Al-spr~L-Ays~~~~~l~~~--G~v-----s~q~l~~~~~s~stsps~gslva~~A~d 300 (838)
|..|- . .|.+-- |-|.+ .|.+..+++|+. |.. +.+.+..|.+... ..++++...-.+
T Consensus 189 h~~~c-----t------~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~---~~~~~~~~g~~e 254 (399)
T KOG0296|consen 189 HNSPC-----T------CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN---LAGSTLTKGNSE 254 (399)
T ss_pred CCCCc-----c------cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc---cccceeEeccCC
Confidence 55531 0 011100 11332 477777888975 311 0111111221111 111221111111
Q ss_pred hhhhh---hcccccccccc---ccccCCCC----CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC
Q 003221 301 HSKQF---AAGLSKTLSKY---CQELLPDG----SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS 370 (838)
Q Consensus 301 s~k~l---a~Gl~ktls~y---~~~~~p~g----s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~s 370 (838)
....+ ..| |.+.-. ...+.+.- ....+.+.+. + +.+ .+.|.-+|+|.|||+...+. .++-.|..
T Consensus 255 ~~~~~~~~~sg--KVv~~~n~~~~~l~~~~e~~~esve~~~~ss-~-lpL-~A~G~vdG~i~iyD~a~~~~-R~~c~he~ 328 (399)
T KOG0296|consen 255 GVACGVNNGSG--KVVNCNNGTVPELKPSQEELDESVESIPSSS-K-LPL-AACGSVDGTIAIYDLAASTL-RHICEHED 328 (399)
T ss_pred ccEEEEccccc--eEEEecCCCCccccccchhhhhhhhhccccc-c-cch-hhcccccceEEEEecccchh-heeccCCC
Confidence 11111 111 111000 00011100 0001111100 0 000 12577899999999987664 55667999
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
+|..|.|-+ -.+|+||..+|+ ||.||.++ | ++++++ +|+ +..|++++.+||.++++++|
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y-~GH-~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTY-TGH-QMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred ceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEE-ecC-chheeEEEEcCCCcEEEEec
Confidence 999999999 678888988786 99999975 5 577776 564 56799999999999999999
Q ss_pred CCCeEEEEecC
Q 003221 451 SKGTCHVFVLS 461 (838)
Q Consensus 451 ~dGTVhIw~l~ 461 (838)
.|+|.+||.+.
T Consensus 388 ~D~~a~VF~v~ 398 (399)
T KOG0296|consen 388 DDNTALVFEVP 398 (399)
T ss_pred CCCeEEEEecC
Confidence 99999999874
No 73
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=4e-12 Score=132.97 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=149.3
Q ss_pred eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEE
Q 003221 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (838)
Q Consensus 98 ~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~I 177 (838)
...+++|.+.|..+++.|. +..+||.++. +++||+
T Consensus 7 ~~~~~gh~~r~W~~awhp~------------~g~ilAscg~---------------------------------Dk~vri 41 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPG------------KGVILASCGT---------------------------------DKAVRI 41 (312)
T ss_pred EEeecCCCCcEEEEEeccC------------CceEEEeecC---------------------------------CceEEE
Confidence 4567888899999999973 1125654221 389999
Q ss_pred EECCC---CeEEEEEe--CCCcEEEEEeCC--CeEEEEe-CCeEEEEECC--CCceeeEEeecCCcccCCCCcccccccc
Q 003221 178 YSFQS---HCYEHVLR--FRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 178 WDl~t---g~~V~tL~--f~s~V~sV~~s~--~iLaV~l-~~~I~IwD~~--t~e~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
|+... -.+...|. +.-.|.+|+++| ++||++. +..+.||.=. ++++.-+|.+|.+. +
T Consensus 42 w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------------V 108 (312)
T KOG0645|consen 42 WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------------V 108 (312)
T ss_pred EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------------e
Confidence 99984 34444552 345899999977 5777754 6688999755 45677888887774 1
Q ss_pred ceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCC
Q 003221 248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (838)
Q Consensus 248 g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs 325 (838)
-.+|++. +|||.
T Consensus 109 K~Vaws~sG~~LAT------------------------------------------------------------------ 122 (312)
T KOG0645|consen 109 KCVAWSASGNYLAT------------------------------------------------------------------ 122 (312)
T ss_pred eEEEEcCCCCEEEE------------------------------------------------------------------
Confidence 2333322 33332
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCC
Q 003221 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (838)
Q Consensus 326 ~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~---~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (838)
++.+..|.||.+..+ .+++.|+.|+.-|--+.|.|.-.+|+++|-|.+ ||+|+-.+.
T Consensus 123 -------------------CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT-Ik~~~~~~d 182 (312)
T KOG0645|consen 123 -------------------CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT-IKVYRDEDD 182 (312)
T ss_pred -------------------eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe-EEEEeecCC
Confidence 234566888888743 478899999999999999999999999999655 999997531
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 403 ~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
+ + .+++.+|. |+++ .|++++|.+.|..|+++++|+||+||.+-
T Consensus 183 ------d----d----W~c~~tl~-g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 183 ------D----D----WECVQTLD-GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ------C----C----eeEEEEec-Cccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 1 2 35777773 5444 79999999999999999999999999964
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=5.5e-13 Score=145.38 Aligned_cols=277 Identities=16% Similarity=0.158 Sum_probs=177.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCc--eeEEeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~--v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~ 128 (838)
..+++|+|=+..|-- .++.|+++..+ +.-||++..... +..++-+|..+|..+.++|+
T Consensus 220 l~~htdEVWfl~FS~-------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD------------ 280 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSH-------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD------------ 280 (519)
T ss_pred HhhCCCcEEEEEEcC-------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC------------
Confidence 467899998888844 37899999987 478999976554 24566778899999999996
Q ss_pred CCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEeCCC--e
Q 003221 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSPR--I 204 (838)
Q Consensus 129 srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~--s~V~sV~~s~~--i 204 (838)
.|.||+ ++. ...+++||..+|+..+.+... ..+.+.++.|+ .
T Consensus 281 dryLla-Cg~---------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 281 DRYLLA-CGF---------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred CCeEEe-cCc---------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 344543 221 135999999999999888655 57888888886 4
Q ss_pred EEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEE-EEeCCC-ceeecCCCCCCcccCC
Q 003221 205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL-AYASNT-LLLSNSGRLSPQNLTP 279 (838)
Q Consensus 205 LaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~L-Ays~~~-~~l~~~G~vs~q~l~~ 279 (838)
+++ +.+.+|+-||+.... +.....--.| ....+|+.+ .|+ +...++ ..+.+
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~------------~v~dlait~Dgk~vl~v~~d~~i~l~~----------- 382 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNI-LGNWEGVRDP------------KVHDLAITYDGKYVLLVTVDKKIRLYN----------- 382 (519)
T ss_pred eEecCCCCcEEEecCCcch-hhcccccccc------------eeEEEEEcCCCcEEEEEecccceeeec-----------
Confidence 555 446689999987533 2222211111 022344433 222 222111 11111
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhcccc---ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS---KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~---ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl 356 (838)
++. .+-.|+. +.++. ++-+.+++... .--.+.++++||+
T Consensus 383 -------------------~e~--~~dr~lise~~~its-------------~~iS~d~k~~L----vnL~~qei~LWDl 424 (519)
T KOG0293|consen 383 -------------------REA--RVDRGLISEEQPITS-------------FSISKDGKLAL----VNLQDQEIHLWDL 424 (519)
T ss_pred -------------------hhh--hhhhccccccCceeE-------------EEEcCCCcEEE----EEcccCeeEEeec
Confidence 000 0001111 00111 11111122111 1134678999999
Q ss_pred CCCcEEEEeccCCCC--eEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 003221 357 VTRAIISQFKAHTSP--ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (838)
Q Consensus 357 ~s~~~v~~~~aH~sp--IsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~ 433 (838)
+..+.+..+.+|+.. |-.-||-- +.+++|+||+|+. |+||+-.. | ..+.+| -|+. ..
T Consensus 425 ~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-------g----------kll~~L-sGHs-~~ 484 (519)
T KOG0293|consen 425 EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-------G----------KLLAVL-SGHS-KT 484 (519)
T ss_pred chhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-------C----------ceeEee-cCCc-ce
Confidence 988889999999753 55567765 4589999999765 99999854 4 466777 4654 46
Q ss_pred EEEEEEccCC-CEEEEEeCCCeEEEEecCCC
Q 003221 434 IQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 434 I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~ 463 (838)
|.+++|+|.. ..+|++|+||||+||...+.
T Consensus 485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999964 57999999999999998764
No 75
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.50 E-value=1.7e-12 Score=143.17 Aligned_cols=110 Identities=16% Similarity=0.321 Sum_probs=82.8
Q ss_pred ccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCC-cccc-CCcc
Q 003221 344 DMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH-KYDW-NSSH 419 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~-~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~-~~~~-~~~~ 419 (838)
+++.|++|.+||+++.+ .+.+|.+|...|..|.|||. .+.||+++.|++ ++|||+..- |.. ...- ....
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDGP 362 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccCC
Confidence 35679999999999864 67899999999999999996 789999999776 899999532 110 0000 0000
Q ss_pred eEEEEEecccccccEEEEEEccCCCE-EEEEeCCCeEEEEecC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLS 461 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~-Las~S~dGTVhIw~l~ 461 (838)
..+.=.++|+ .+.|.+++|.|..-| ||+.+.|+.+|||...
T Consensus 363 pEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 363 PELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1223335675 467999999999887 6778999999999986
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=150.30 Aligned_cols=231 Identities=12% Similarity=0.103 Sum_probs=160.9
Q ss_pred eEEEEEecCcEEEEEccCCCc--eeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 76 QVLLLGYQNGFQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~g~--v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+...|.+.-|++|++.. +. ....|.+..|++..+.+-+. .+..||. +
T Consensus 189 tlatgg~Dr~Ik~W~v~~-~k~~~~~tLaGs~g~it~~d~d~~------------~~~~iAa-s---------------- 238 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLG-EKSELISTLAGSLGNITSIDFDSD------------NKHVIAA-S---------------- 238 (459)
T ss_pred hhhhcchhhhhhhhhccc-chhhhhhhhhccCCCcceeeecCC------------CceEEee-c----------------
Confidence 344455555699999953 33 44567777788999988753 2234432 1
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCCe--EEEEe-CCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRI--VAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~i--LaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
.++.+++|++...+..++|.-+ ..|.++.|.... ++.+. +.+|++||+....|.+++.-
T Consensus 239 -----------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 239 -----------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred -----------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 1367999999999999999754 699999996542 33333 45799999998776554321
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
-.. .+-++++ . +
T Consensus 302 ~S~--------------cnDI~~~-------~------------------------------~----------------- 313 (459)
T KOG0288|consen 302 GSQ--------------CNDIVCS-------I------------------------------S----------------- 313 (459)
T ss_pred ccc--------------ccceEec-------c------------------------------e-----------------
Confidence 000 0111110 0 0
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~ 389 (838)
.+.++..|+.|+.||+.+........+|. .|++|..+++|..|.+++-
T Consensus 314 -------------------------------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 314 -------------------------------DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred -------------------------------eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC
Confidence 00134668889999999999988888886 9999999999999999988
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccc
Q 003221 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 390 dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t-~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~ 468 (838)
|++ ++++|+... + ..+.|.-. |+. ...++-+.||||+.|+|+||.||.|+||++...+.+..
T Consensus 362 Ddt-l~viDlRt~------e---------I~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 362 DDT-LKVIDLRTK------E---------IRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred CCc-eeeeecccc------c---------EEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 765 999998642 1 13333321 322 23588899999999999999999999999988776655
Q ss_pred cc
Q 003221 469 FQ 470 (838)
Q Consensus 469 ~~ 470 (838)
+.
T Consensus 425 l~ 426 (459)
T KOG0288|consen 425 LS 426 (459)
T ss_pred ec
Confidence 43
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=1.9e-12 Score=151.44 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=130.1
Q ss_pred CCCCCcccCccCCCCC-CCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC----eEEEEeCCeEEEEECCCCceee
Q 003221 151 SHLGGVRDGMMDSQSG-NCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR----IVAVGLATQIYCFDALTLENKF 225 (838)
Q Consensus 151 ~~~~~~~~gs~d~~~~-~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~----iLaV~l~~~I~IwD~~t~e~l~ 225 (838)
+|.+.|-|-+|...+- -....++|||||+....++++++.+..-|.+|+|+|. +|..++|+.|+||++.+-+...
T Consensus 367 GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~ 446 (712)
T KOG0283|consen 367 GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD 446 (712)
T ss_pred ccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe
Confidence 5666777777763211 1235679999999999999999999999999999983 4555778899999998754322
Q ss_pred EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 226 tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
.....+. ... +.|.++ +.+.
T Consensus 447 ---W~Dl~~l-----------ITA-------vcy~Pd--------------------------Gk~a------------- 466 (712)
T KOG0283|consen 447 ---WNDLRDL-----------ITA-------VCYSPD--------------------------GKGA------------- 466 (712)
T ss_pred ---ehhhhhh-----------hee-------EEeccC--------------------------CceE-------------
Confidence 1111100 011 122221 0000
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec--cC------CCCeEEEEE
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--AH------TSPISALCF 377 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~--aH------~spIsaLaF 377 (838)
+ -|..+|.+++|+....+....+. -| ...|+.+.|
T Consensus 467 ----------------------------------v---IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 467 ----------------------------------V---IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ----------------------------------E---EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 0 14567888888888776654443 22 127999999
Q ss_pred CCCCC--EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCe
Q 003221 378 DPSGT--LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGT 454 (838)
Q Consensus 378 SPdGt--lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a-~I~sIaFSpDg~~Las~S~dGT 454 (838)
.|.-. +|+|.. +..|||||.... ..+.+| +|..+. .=..-+|+.||++|+++|+|.-
T Consensus 510 ~p~~~~~vLVTSn--DSrIRI~d~~~~-----------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 510 FPGDPDEVLVTSN--DSRIRIYDGRDK-----------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred cCCCCCeEEEecC--CCceEEEeccch-----------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCce
Confidence 98543 666654 345999998531 234444 344333 2345789999999999999999
Q ss_pred EEEEecCCCC
Q 003221 455 CHVFVLSPFG 464 (838)
Q Consensus 455 VhIw~l~~~g 464 (838)
|+||++....
T Consensus 570 VYiW~~~~~~ 579 (712)
T KOG0283|consen 570 VYIWKNDSFN 579 (712)
T ss_pred EEEEeCCCCc
Confidence 9999986654
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.49 E-value=7.1e-12 Score=146.07 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=79.8
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
-.+-.|+|+|..+.+++..|.+|+..|++++|||||++|++|+.|++ ||+||+.+ | .++--+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-------~----------~lID~~ 614 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-------G----------TLIDGL 614 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC-------c----------ceeeeE
Confidence 45667999999999999999999999999999999999999999876 99999953 3 244334
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCC-CeEEEEec
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVL 460 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~d-GTVhIw~l 460 (838)
. ......+|+|||.|.+||++..| .-|.+|.=
T Consensus 615 ~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 615 L---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred e---cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 2 23468999999999999999999 45999973
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.48 E-value=7.8e-12 Score=130.26 Aligned_cols=232 Identities=13% Similarity=0.174 Sum_probs=163.9
Q ss_pred eeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcC
Q 003221 65 DRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (838)
Q Consensus 65 d~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~ 144 (838)
||+.+.+....++.++..+..+++||+-. +++...+....+.+. +.+.|.+ ..++++.
T Consensus 68 dql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~~~~eni~-i~wsp~g-------------~~~~~~~------- 125 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIETKGENIN-ITWSPDG-------------EYIAVGN------- 125 (313)
T ss_pred hhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEeeccCcceE-EEEcCCC-------------CEEEEec-------
Confidence 34444444445555566667899999954 555444444444443 5677652 2455422
Q ss_pred CCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC---eEEEEeCCeEEEEECCCC
Q 003221 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---IVAVGLATQIYCFDALTL 221 (838)
Q Consensus 145 ~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~ 221 (838)
.+..|.+.|.++.+.++..+|.-.+..+.++-. +++....+.|.|..-..+
T Consensus 126 --------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL 179 (313)
T KOG1407|consen 126 --------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL 179 (313)
T ss_pred --------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence 125799999999999999999999999988642 444445578999888888
Q ss_pred ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhh
Q 003221 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (838)
Q Consensus 222 e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds 301 (838)
+..++|..||.- .+++ +|.+.
T Consensus 180 kpv~si~AH~sn---------------CicI-----~f~p~--------------------------------------- 200 (313)
T KOG1407|consen 180 KPVQSIKAHPSN---------------CICI-----EFDPD--------------------------------------- 200 (313)
T ss_pred ccccccccCCcc---------------eEEE-----EECCC---------------------------------------
Confidence 888888887751 2222 22221
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 003221 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (838)
Q Consensus 302 ~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdG 381 (838)
+++.+ .|+.|..|.+||+...-++..|.-|.-||..|+||.||
T Consensus 201 ---------------------------------GryfA----~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 201 ---------------------------------GRYFA----TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG 243 (313)
T ss_pred ---------------------------------CceEe----eccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence 11111 24456789999999998999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---------
Q 003221 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK--------- 452 (838)
Q Consensus 382 tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d--------- 452 (838)
+|||+||+ ++.|-|=++.+ | .++.+.. ..+.-..++|.|....||-+.+|
T Consensus 244 ~~lASaSE-Dh~IDIA~vet-------G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~rea 302 (313)
T KOG1407|consen 244 RMLASASE-DHFIDIAEVET-------G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREA 302 (313)
T ss_pred ceeeccCc-cceEEeEeccc-------C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCcccccc
Confidence 99999999 67788877754 4 4666664 34567899999999999988776
Q ss_pred CeEEEEecC
Q 003221 453 GTCHVFVLS 461 (838)
Q Consensus 453 GTVhIw~l~ 461 (838)
|+|+||-++
T Consensus 303 g~vKiFG~~ 311 (313)
T KOG1407|consen 303 GTVKIFGLS 311 (313)
T ss_pred ceeEEecCC
Confidence 677777654
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=6.7e-13 Score=151.13 Aligned_cols=102 Identities=17% Similarity=0.079 Sum_probs=87.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.|+..+.+++||..+++.+..++||+..|.+|-.++||+.+.|||.||+ ||+||+.. -+++.
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgq-----------------QrCl~ 249 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQ-----------------QRCLA 249 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccc-----------------cceee
Confidence 4667889999999999999999999999999999999999999999887 99999932 15666
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
++.- +...||++.-+|+=+.+.+|+.||.|..=+|..+..
T Consensus 250 T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 250 TYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 6643 233599999999999999999999999888877533
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.47 E-value=3.8e-12 Score=141.89 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=81.8
Q ss_pred ccCCCceEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 344 DMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~-~v~~~~-----aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
+++.||+++|||+.+-+ .+..|+ +-.-+++..+|+|||+++|+|-.||. |.+|+....
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~--------------- 349 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR--------------- 349 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc---------------
Confidence 56789999999997633 233333 23457899999999999999999886 999997211
Q ss_pred cceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccc
Q 003221 418 SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 418 ~~~~l~~L~RG~t~-a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~ 468 (838)
.....+..+..+.. ..|+||+||+||++|++=+.|+|++||+|..+.....
T Consensus 350 ~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 350 TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 11233333333333 3799999999999999999999999999988776543
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=9.3e-12 Score=132.44 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=64.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC--------C------CCCC--ccccCC-------
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--------G------SGNH--KYDWNS------- 417 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~--------~------~G~~--~~~~~~------- 417 (838)
.+-.+++|.+.|.++||||+.+.++|+|.||+ +||||+.-.+-.. + .|.. .-.+.+
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 45678899999999999999999999999987 9999985432100 0 0000 000000
Q ss_pred ---cceEEEEEeccc--------ccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 418 ---SHVHLYKLHRGI--------TSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 418 ---~~~~l~~L~RG~--------t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
+--++|--++|. +...|.+|+|++||+++|+++++ -++|+.
T Consensus 349 s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 112333333332 23469999999999999999877 477765
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.46 E-value=5.9e-12 Score=138.23 Aligned_cols=226 Identities=14% Similarity=0.197 Sum_probs=156.5
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
..+|..|-+...-++|.+ .+.+..++.+|...|..+.+.|+- -+++.
T Consensus 232 ~~ilTGG~d~~av~~d~~-s~q~l~~~~Gh~kki~~v~~~~~~-------------~~v~~------------------- 278 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKP-SNQILATLKGHTKKITSVKFHKDL-------------DTVIT------------------- 278 (506)
T ss_pred CcceecCCCCceEEEecc-hhhhhhhccCcceEEEEEEeccch-------------hheee-------------------
Confidence 344555555589999984 567788899999889998888641 01211
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCC--CeEEEEe-CCeEEEEECCCCceeeEEeec
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY 230 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~--~iLaV~l-~~~I~IwD~~t~e~l~tL~t~ 230 (838)
++ +...+++|+.-...+...++ +..+|..+..++ ++|+.+. ++.+.+.|+.++.++......
T Consensus 279 ----aS----------ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 279 ----AS----------ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ----cC----------CcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 11 23679999987776655554 457998888876 4665555 556777789988765544321
Q ss_pred CCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccc
Q 003221 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (838)
Q Consensus 231 p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ 310 (838)
.+ + +.+...++ -++
T Consensus 345 ~s---------~--v~~ts~~f-------HpD------------------------------------------------ 358 (506)
T KOG0289|consen 345 TS---------D--VEYTSAAF-------HPD------------------------------------------------ 358 (506)
T ss_pred cc---------c--ceeEEeeE-------cCC------------------------------------------------
Confidence 11 0 01212222 111
Q ss_pred ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC
Q 003221 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (838)
Q Consensus 311 ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d 390 (838)
| +-++.|..||.|+|||+.+...++.|.+|++||.+++|+-+|-+|||+..|
T Consensus 359 -------------g---------------Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 359 -------------G---------------LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred -------------c---------------eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 1 011245678999999999999999999999999999999999999999998
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 391 Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
|. |++||++-. . ..+.+.+.. ...|.+++|.+.|++|++++.|=+|++++-
T Consensus 411 ~~-V~lwDLRKl--~-------------n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 411 GS-VKLWDLRKL--K-------------NFKTIQLDE---KKEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred Ce-EEEEEehhh--c-------------ccceeeccc---cccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 76 999999642 0 012233322 225899999999999999988877887773
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.8e-12 Score=133.16 Aligned_cols=247 Identities=14% Similarity=0.130 Sum_probs=165.2
Q ss_pred CCCCcEEEEEEeecc------CCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003221 54 DLKDQVTWAGFDRLE------YGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~------~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
+.+.-.....||.-+ ...+...++++...++.+||||+.....-...+..|...|..+-+.+.
T Consensus 47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~----------- 115 (311)
T KOG0277|consen 47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV----------- 115 (311)
T ss_pred CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-----------
Confidence 455555666676311 112223566666666679999987766666777888888999988753
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC---
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--- 203 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--- 203 (838)
.|..+++ ++|| ++|++||...++-+.+++- .+.|+...++|.
T Consensus 116 -~r~~~lt-----------------------sSWD----------~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 116 -RRRIFLT-----------------------SSWD----------GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN 161 (311)
T ss_pred -cceeEEe-----------------------eccC----------CceEeecCCCCcceEeecCCccEEEEEecCCCCCC
Confidence 1222222 2576 8999999999999999864 468999999874
Q ss_pred eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCC
Q 003221 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
+++.+. ++..++||++..-....+..|... +++..|=
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cdw~------------------------- 199 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCDWS------------------------- 199 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeeccc-------------------------
Confidence 666544 567999998864333333333211 1111111
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-E
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-I 361 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~-~ 361 (838)
+|-.. ++ ++++.|+.|++||+.+.+ .
T Consensus 200 --------------------------------ky~~~-----------------vl----~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 200 --------------------------------KYNHN-----------------VL----ATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred --------------------------------ccCCc-----------------EE----EecCCCceEEEEehhhcccc
Confidence 11110 00 145678999999999865 5
Q ss_pred EEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 362 ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
+..+.+|.-.|..++|||. -.+|||||-|- ++||||.+.. .+ ....++. |..=+..+.||
T Consensus 227 l~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-T~riw~~~~~-----ds---------~~e~~~~----HtEFv~g~Dws 287 (311)
T KOG0277|consen 227 LFELNGHGLAVRKVKFSPHHASLLASASYDM-TVRIWDPERQ-----DS---------AIETVDH----HTEFVCGLDWS 287 (311)
T ss_pred ceeecCCceEEEEEecCcchhhHhhhccccc-eEEecccccc-----hh---------hhhhhhc----cceEEeccccc
Confidence 7888999999999999996 67999999965 4999998631 01 0112221 22236667777
Q ss_pred c-CCCEEEEEeCCCeEEEEe
Q 003221 441 H-YSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 441 p-Dg~~Las~S~dGTVhIw~ 459 (838)
+ +..++|+++-|+++.||+
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccCceeeecccccceeeec
Confidence 5 678999999999999997
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-11 Score=141.18 Aligned_cols=240 Identities=17% Similarity=0.182 Sum_probs=180.3
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
..++|++|....+-+|+-. .+.+.++.+.+...|+.+.+.+++ ..||+-.
T Consensus 187 s~n~laValg~~vylW~~~-s~~v~~l~~~~~~~vtSv~ws~~G-------------~~LavG~---------------- 236 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSAS-SGSVTELCSFGEELVTSVKWSPDG-------------SHLAVGT---------------- 236 (484)
T ss_pred cCCeEEEEecceEEEEecC-CCceEEeEecCCCceEEEEECCCC-------------CEEEEee----------------
Confidence 3679999999999999984 677888888778889999999753 2677622
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeE-Eee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFS-VLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f--~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~t-L~t 229 (838)
..+.|.|||.++.+.+.++.. ...|-+++++..++..|. +..|..+|++..+.... +..
T Consensus 237 -----------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 237 -----------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred -----------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 137899999999999999977 569999999988888776 45799999998765433 222
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
|... .|. |+++.+. +++
T Consensus 300 H~qe---------------VCg-----Lkws~d~---------------------------------------~~l---- 316 (484)
T KOG0305|consen 300 HRQE---------------VCG-----LKWSPDG---------------------------------------NQL---- 316 (484)
T ss_pred ccce---------------eee-----eEECCCC---------------------------------------Cee----
Confidence 2211 111 2222110 001
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEe
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS 388 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS 388 (838)
++|.+|+.|.|||......+..|..|+..|-+|+|+| ...+||||+
T Consensus 317 ---------------------------------ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 317 ---------------------------------ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred ---------------------------------ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 1356789999999988888999999999999999999 577999965
Q ss_pred -cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE--eCCCeEEEEecCCCCC
Q 003221 389 -VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGG 465 (838)
Q Consensus 389 -~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~--S~dGTVhIw~l~~~gg 465 (838)
..+..|++||+.. | .++.... +...|.+|.||+..+-|+++ -.++-|.||+......
T Consensus 364 Gs~D~~i~fwn~~~-------g----------~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 364 GSADRCIKFWNTNT-------G----------ARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCcccEEEEEEcCC-------C----------cEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 3355699999964 4 3554443 44579999999999777764 4556799999999998
Q ss_pred ccccccCCCCC
Q 003221 466 DSGFQTLSSQG 476 (838)
Q Consensus 466 ~~~~~~H~~~~ 476 (838)
...+.+|...|
T Consensus 424 ~~~l~gH~~RV 434 (484)
T KOG0305|consen 424 VAELLGHTSRV 434 (484)
T ss_pred eeeecCCccee
Confidence 89999997543
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.8e-12 Score=129.87 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=86.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+++.||+.++||+........|.+|...|.++.|+. +-.+|||++.|+ .||+||+... ..++
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~wDir~~----------------r~pl 227 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGWDIRNL----------------RTPL 227 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc-eEEEEehhhc----------------cccc
Confidence 346789999999987555555999999999999998 577999999965 5999999642 1478
Q ss_pred EEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCCCCC-ccccccCC
Q 003221 423 YKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGG-DSGFQTLS 473 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~~~gg-~~~~~~H~ 473 (838)
.+| .|+.- -|..|.|||- ...||++|-|-|++||+.+.... ......|+
T Consensus 228 ~eL-~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 228 FEL-NGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred eee-cCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 888 45443 5999999997 45799999999999999885443 33344554
No 87
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.1e-11 Score=131.90 Aligned_cols=240 Identities=18% Similarity=0.214 Sum_probs=160.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+..|++|..+| +-|||... -..-.+++.|--||.++.+++++ |.|| ..+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dg------------r~Ll-tsS---------------- 84 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDG------------RKLL-TSS---------------- 84 (405)
T ss_pred cceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCC------------CEee-eec----------------
Confidence 56999999998 99999965 44778999999999999999864 3343 312
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC----eEEEEeCCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR----IVAVGLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~----iLaV~l~~~I~IwD~~t~e~l~tL~t 229 (838)
.+..+.+||+..|.+++.++|+++|+.+.+.|+ .+|.-...+-++.++.+. .++++.
T Consensus 85 -----------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp 145 (405)
T KOG1273|consen 85 -----------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLP 145 (405)
T ss_pred -----------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeecc
Confidence 137899999999999999999999999999874 233333333334333331 122211
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
-.++ |.. ..+++
T Consensus 146 -----------------------------~d~d-------~dl------------n~sas-------------------- 157 (405)
T KOG1273|consen 146 -----------------------------KDDD-------GDL------------NSSAS-------------------- 157 (405)
T ss_pred -----------------------------CCCc-------ccc------------ccccc--------------------
Confidence 0000 000 00000
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEEe
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTAS 388 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~-spIsaLaFSPdGtlLATAS 388 (838)
...++..+++.. +|...|.+.|+|+.+.++++.|+-.+ ..|..+-|+..|+.|++-.
T Consensus 158 ------------------~~~fdr~g~yIi----tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 158 ------------------HGVFDRRGKYII----TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred ------------------cccccCCCCEEE----EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec
Confidence 001111122221 35678999999999999999998776 8999999999999999998
Q ss_pred cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC-eEEEEecCC
Q 003221 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSP 462 (838)
Q Consensus 389 ~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG-TVhIw~l~~ 462 (838)
. +++||+|++..-...+..| .....++++--.....-.+++||.||.|++++|.+. .++||.-..
T Consensus 216 s-DRvIR~ye~~di~~~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 216 S-DRVIRTYEISDIDDEGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred C-CceEEEEehhhhcccCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 8 6889999986321111111 122334443222333467899999999999998765 489998554
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.42 E-value=4e-12 Score=141.77 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=78.8
Q ss_pred cCCCceEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 345 MDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~---v~~~~aH~s--pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
+-.||.|++||..+..+ ...=.||.. .|+||+||+||++|++-+.|++ ++|||+... .
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~----------------k 397 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF----------------K 397 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc----------------c
Confidence 34689999999865432 233358988 9999999999999999999886 999999531 1
Q ss_pred eEEEEEeccc-ccccEEEEEEccCCCEEEEEeCC------CeEEEEecCCCCCcccc
Q 003221 420 VHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSK------GTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 420 ~~l~~L~RG~-t~a~I~sIaFSpDg~~Las~S~d------GTVhIw~l~~~gg~~~~ 469 (838)
+.|... .|. +...-++++||||.+.|++|++- |++.+|+-.++.....+
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 344333 232 22356789999999999998764 67888887776654443
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.41 E-value=2.6e-11 Score=126.69 Aligned_cols=212 Identities=15% Similarity=0.149 Sum_probs=151.7
Q ss_pred EeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEE
Q 003221 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (838)
Q Consensus 100 lls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWD 179 (838)
++.+|+-|+..|++.-+ ..||..++- +.+..+|=
T Consensus 5 ~l~GHERplTqiKyN~e-------------GDLlFscaK---------------------------------D~~~~vw~ 38 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-------------GDLLFSCAK---------------------------------DSTPTVWY 38 (327)
T ss_pred ccccCccccceEEecCC-------------CcEEEEecC---------------------------------CCCceEEE
Confidence 45678889999998743 237765442 25678998
Q ss_pred CCCCeEEEEEeC-CCcEEEEEeCC--CeEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEE--c
Q 003221 180 FQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV--G 253 (838)
Q Consensus 180 l~tg~~V~tL~f-~s~V~sV~~s~--~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Al--s 253 (838)
...|+.+-+++- .+.|+++..+. +.|+.+. +..+++||+.+++++.++.+.. | .-.+.+ +
T Consensus 39 s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~-~-------------Vk~~~F~~~ 104 (327)
T KOG0643|consen 39 SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS-P-------------VKRVDFSFG 104 (327)
T ss_pred ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC-e-------------eEEEeeccC
Confidence 889999999975 57898888865 4666655 4569999999999999887521 1 001111 1
Q ss_pred ccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCC
Q 003221 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (838)
Q Consensus 254 pr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~ 333 (838)
..++.+..+.
T Consensus 105 gn~~l~~tD~---------------------------------------------------------------------- 114 (327)
T KOG0643|consen 105 GNLILASTDK---------------------------------------------------------------------- 114 (327)
T ss_pred CcEEEEEehh----------------------------------------------------------------------
Confidence 1111111100
Q ss_pred ccccccccccccCCCceEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC
Q 003221 334 VWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (838)
Q Consensus 334 ~~k~~~~~~~~g~~~G~V~VwDl~-------s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~ 406 (838)
...+.+.|.++|+. +.++...+..|.+.|+.+-|+|-|..|+++.++|. |++||+..
T Consensus 115 ----------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da~~----- 178 (327)
T KOG0643|consen 115 ----------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDART----- 178 (327)
T ss_pred ----------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEccc-----
Confidence 12345678888887 45567888889999999999999999999999886 99999964
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccc
Q 003221 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 407 ~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
| ..+.+-.+ .+...|.+|.||+|..+++++|.|.|.++||+.......+..
T Consensus 179 --g----------~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 179 --G----------KELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred --C----------ceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 3 23333222 234579999999999999999999999999998876554443
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.41 E-value=1.2e-11 Score=128.20 Aligned_cols=281 Identities=14% Similarity=0.122 Sum_probs=182.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcE-EEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF-QVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~-qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.+++-.|.-.-|--+. + .+-+|+.+..+|- .+-+- ++|...-++.+|.|.|....+..+.
T Consensus 11 ~ghtrpvvdl~~s~it--p--~g~flisa~kd~~pmlr~g-~tgdwigtfeghkgavw~~~l~~na-------------- 71 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPIT--P--DGYFLISASKDGKPMLRNG-DTGDWIGTFEGHKGAVWSATLNKNA-------------- 71 (334)
T ss_pred cCCCcceeEEeccCCC--C--CceEEEEeccCCCchhccC-CCCCcEEeeeccCcceeeeecCchh--------------
Confidence 3455566666664421 1 2567888888873 34443 5677888899999999987766431
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEE-E
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAV-G 208 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV-~ 208 (838)
+.|. + ++ .+-+-++||.-+|..++++++..-|.+++|+.+ .|+. +
T Consensus 72 ~~aa-s---------------------aa----------adftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 72 TRAA-S---------------------AA----------ADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred hhhh-h---------------------hc----------ccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccc
Confidence 2221 1 11 235788999999999999999999999999876 4555 4
Q ss_pred eCCeEEEEECCCCce-eeEEeecCCcccCCCCccccccccceeEEcc-cEEEEeCC-CceeecC--CCCCCcccCCCCCC
Q 003221 209 LATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASN-TLLLSNS--GRLSPQNLTPSGVS 283 (838)
Q Consensus 209 l~~~I~IwD~~t~e~-l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp-r~LAys~~-~~~l~~~--G~vs~q~l~~~~~s 283 (838)
.+.-++|||+...+- ...+..|+. + |....++.+- ..|..+.+ .+.+||. |.. .|.|.-+ +
T Consensus 120 ~ekllrvfdln~p~App~E~~ghtg---------~--Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~~--s 185 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHTG---------G--IRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-VQSLEFN--S 185 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCCC---------c--ceeEEEeccCceEEeeccCCceEEEEeccCcE-EEEEecC--C
Confidence 455689999886542 222222322 1 2233344433 66665544 6788985 221 1222100 0
Q ss_pred CCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEE
Q 003221 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (838)
Q Consensus 284 ~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~ 363 (838)
+ +...--+++++.+. ....+.|..||..+..++.
T Consensus 186 ~-----------------------------------------VtSlEvs~dG~ilT-----ia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 186 P-----------------------------------------VTSLEVSQDGRILT-----IAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred C-----------------------------------------CcceeeccCCCEEE-----EecCceeEEecccccccee
Confidence 0 00000011122222 2356789999999998888
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
.++.. ..|.+.+++|+-..++.+++|+. ++.||..+ | ..+-.+..|+ ...|.|+.|||||
T Consensus 220 s~k~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~T-------g----------eEi~~~nkgh-~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 220 SYKMP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT-------G----------EEIGSYNKGH-FGPVHCVRFSPDG 279 (334)
T ss_pred eccCc-cccccccccCCCceEEecCcceE-EEEEeccC-------C----------ceeeecccCC-CCceEEEEECCCC
Confidence 87753 46889999999989999999776 78899864 3 2333334564 4579999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCC
Q 003221 444 QWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~g 464 (838)
..-|+||.||||+||...+..
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 999999999999999987654
No 91
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.40 E-value=9.4e-12 Score=138.26 Aligned_cols=263 Identities=16% Similarity=0.174 Sum_probs=171.2
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEe----eeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELV----SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ell----s~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~ 150 (838)
.+-+-+|..++++|||+...++-.-+- -.+|.-++.+.++|++ |.|| |.|+
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg------------rtLi--vGGe----------- 485 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------RTLI--VGGE----------- 485 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC------------ceEE--eccc-----------
Confidence 445566778899999997655432211 1256668888888763 4454 3321
Q ss_pred CCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEeCCC---eEEEEeCCeEEEEECCCCcee
Q 003221 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPR---IVAVGLATQIYCFDALTLENK 224 (838)
Q Consensus 151 ~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s---~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l 224 (838)
..+|.||||..-+.-...+..+ ..++++.+++ .++++.++.|.|||+.+....
T Consensus 486 ---------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 486 ---------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ---------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 1579999998776544444544 4588888887 455566789999999998888
Q ss_pred eEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhh
Q 003221 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (838)
Q Consensus 225 ~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~ 304 (838)
.++..|+.- ...+ ....+.-.+|.-| . ...+ ..|+
T Consensus 545 rqfqGhtDG-------------ascI-------dis~dGtklWTGG-l-------------------Dntv-----RcWD 579 (705)
T KOG0639|consen 545 RQFQGHTDG-------------ASCI-------DISKDGTKLWTGG-L-------------------DNTV-----RCWD 579 (705)
T ss_pred ecccCCCCC-------------ceeE-------EecCCCceeecCC-C-------------------ccce-----eehh
Confidence 888887762 2223 3333444455522 1 0011 1355
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 003221 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (838)
Q Consensus 305 la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlL 384 (838)
+..| +.+..|- +..+.-....+++.+|-. .|..++.|.|.... +....++.-|.+-|.+|.|.+.|+++
T Consensus 580 lreg--rqlqqhd--F~SQIfSLg~cP~~dWla------vGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 580 LREG--RQLQQHD--FSSQIFSLGYCPTGDWLA------VGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred hhhh--hhhhhhh--hhhhheecccCCCcccee------eecccCcEEEEecC-CccceeecccccEEEEEEecccCcee
Confidence 5544 2222221 111111122334444432 35677888888764 44567888899999999999999999
Q ss_pred EEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 385 ATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
++.+.| ..++.|++ |. | ..+++... ...|.++..|-|.++|++||.|....||.+
T Consensus 649 vStGkD-nlLnawrt-Py------G----------asiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKD-NLLNAWRT-PY------G----------ASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCch-hhhhhccC-cc------c----------cceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999994 56999998 53 5 35565532 346999999999999999999998888876
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.39 E-value=1e-11 Score=137.17 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=86.6
Q ss_pred ccCCCceEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 344 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 344 ~g~~~G~V~VwDl~--s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
+...+|.+.|||++ +.+.....+||+.+|+|++|+| ++.+|||||.|++ +++||++.- ..
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL----------------~~ 307 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL----------------NK 307 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc----------------cc
Confidence 34678999999999 5566788899999999999999 6889999999877 999999642 14
Q ss_pred EEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCCCCCcc
Q 003221 421 HLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~~~gg~~ 467 (838)
.++.|. | +...|..|.|||. ...||+++.|+.++|||+..-+++.
T Consensus 308 ~lh~~e-~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 308 PLHTFE-G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred Cceecc-C-CCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 677774 4 3457999999997 4578999999999999998877664
No 93
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6e-11 Score=139.77 Aligned_cols=242 Identities=16% Similarity=0.222 Sum_probs=161.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
..|++..+-+.||. +++ .++.+|.+.-+++|+.....+.-+.+..+...|.+++.-- . .
T Consensus 10 yaht~G~t~i~~d~----~ge--fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-------------~--~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP----DGE--FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-------------N--H 68 (933)
T ss_pred hhccCceEEEEEcC----CCC--EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-------------c--c
Confidence 45667767677765 332 4455555555999999665355566665666677776541 1 3
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEeC--CCeEEEEe
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCS--PRIVAVGL 209 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL-~f~s~V~sV~~s--~~iLaV~l 209 (838)
+++ +. ..++|.+|.+-.++.-..| +|.-++..++++ +..+|.|.
T Consensus 69 f~~-~s--------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 69 FLT-GS--------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred eEE-ee--------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeec
Confidence 332 21 1378999998887654333 455555555554 55888777
Q ss_pred CC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCC
Q 003221 210 AT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (838)
Q Consensus 210 ~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsp 288 (838)
++ .|+|.++.+....+.++.|..|. .+ |.|.++.
T Consensus 116 dD~~vK~~~~~D~s~~~~lrgh~apV---------------l~-----l~~~p~~------------------------- 150 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVLRGHDAPV---------------LQ-----LSYDPKG------------------------- 150 (933)
T ss_pred CceeEEEEeccccchheeecccCCce---------------ee-----eeEcCCC-------------------------
Confidence 65 69999999988888887765541 11 2232211
Q ss_pred CCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc-
Q 003221 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA- 367 (838)
Q Consensus 289 s~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a- 367 (838)
.++| ..+.+|.|+|||+.++.+..++..
T Consensus 151 ---~fLA------------------------------------------------vss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 151 ---NFLA------------------------------------------------VSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred ---CEEE------------------------------------------------EEecCceEEEEEcccchhhhhcccC
Confidence 1111 124589999999998765544432
Q ss_pred ------C-CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 368 ------H-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 368 ------H-~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
- ...+..++|+|+|..||....|+. |+||+.. | +.++++|+--.....+.++.||
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~--------~---------we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRK--------G---------WELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccC--------C---------ceeheeecccccccceEEEEEc
Confidence 1 456788999999666666666555 9999985 2 2578888655455569999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~ 462 (838)
|.|+|||+++.||.|-||++++
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999985
No 94
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=2.5e-12 Score=136.52 Aligned_cols=108 Identities=24% Similarity=0.340 Sum_probs=94.1
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+|.+||.|+||.+.++.++..|. ||+..|.||.||.|+..+.++|. +.++||--+.. | .++
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-D~tvRiHGlKS-------G----------K~L 341 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-DQTVRIHGLKS-------G----------KCL 341 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-cceEEEecccc-------c----------hhH
Confidence 46789999999999999999997 99999999999999999999999 56699987753 4 577
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccccc
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~ 471 (838)
.++ ||++. -|....|++||.++.++|+||||+||+..+.....+++.
T Consensus 342 KEf-rGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 342 KEF-RGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred HHh-cCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 777 67654 699999999999999999999999999988877666544
No 95
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.4e-10 Score=121.57 Aligned_cols=278 Identities=15% Similarity=0.206 Sum_probs=163.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEc-cCCCceeEEe--eeccCcEEEEEEecCCCCCCCCCCccc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDV-EDASNFNELV--SKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv-~~~g~v~ell--s~hdg~V~~l~~lP~p~~~~~~d~F~~ 128 (838)
.+|+|-|.-+.||. . ++-+++|..+ .++|||. .+.++..-.- .-|+|.|-.|.+.+ |- |
T Consensus 10 s~h~DlihdVs~D~----~---GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh-PE-------f-- 72 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF----Y---GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH-PE-------F-- 72 (361)
T ss_pred cCCcceeeeeeecc----c---CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC-cc-------c--
Confidence 46889999999998 2 3455565555 5999994 4455554433 34788888888875 21 3
Q ss_pred CCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEEC-----CCC--e--EEEEE-eCCCcEEEE
Q 003221 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-----QSH--C--YEHVL-RFRSSVCMV 198 (838)
Q Consensus 129 srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl-----~tg--~--~V~tL-~f~s~V~sV 198 (838)
...||.++. +++|+||.- +.+ + ...+| .-++.|++|
T Consensus 73 -GqvvA~cS~---------------------------------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV 118 (361)
T KOG2445|consen 73 -GQVVATCSY---------------------------------DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDV 118 (361)
T ss_pred -cceEEEEec---------------------------------CCceeeeeecccccccccceeEEEEEeecCCcceeEE
Confidence 236777653 378999954 221 1 22334 346899999
Q ss_pred EeCCC----eEEE-EeCCeEEEEECCCCceeeEEe-ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCC
Q 003221 199 RCSPR----IVAV-GLATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (838)
Q Consensus 199 ~~s~~----iLaV-~l~~~I~IwD~~t~e~l~tL~-t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~v 272 (838)
.|.|. .||+ +.++.++||++.+.-.+.... .+...... ..++ +...-.++ +-|+.++.
T Consensus 119 ~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~--~pp~-~~~~~~~C-------------vsWn~sr~ 182 (361)
T KOG2445|consen 119 KFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI--DPPG-KNKQPCFC-------------VSWNPSRM 182 (361)
T ss_pred EecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc--CCcc-cccCcceE-------------Eeeccccc
Confidence 99986 3444 446689999987654433221 11100000 0000 00000011 12332222
Q ss_pred CCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEE
Q 003221 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (838)
Q Consensus 273 s~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~ 352 (838)
..+. +| -| ++ ..+..-+.++
T Consensus 183 ~~p~-----------------iA-----------vg----------------------s~----------e~a~~~~~~~ 202 (361)
T KOG2445|consen 183 HEPL-----------------IA-----------VG----------------------SD----------EDAPHLNKVK 202 (361)
T ss_pred cCce-----------------EE-----------EE----------------------cc----------cCCccccceE
Confidence 1111 00 00 00 0122345688
Q ss_pred EEECCCCc----EEEEeccCCCCeEEEEECCC-C---CEEEEEecCCCEEEEEecCCCcccC-CCCCCccccCC--cceE
Q 003221 353 VKDFVTRA----IISQFKAHTSPISALCFDPS-G---TLLVTASVYGNNINIFRIMPSCMRS-GSGNHKYDWNS--SHVH 421 (838)
Q Consensus 353 VwDl~s~~----~v~~~~aH~spIsaLaFSPd-G---tlLATAS~dGt~IrVwdi~p~~~~~-~~G~~~~~~~~--~~~~ 421 (838)
||...... .++.+..|+.||..|+|.|+ | .+||+|+.|| |+||.+...+..- ..+...++... ..++
T Consensus 203 Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~ 280 (361)
T KOG2445|consen 203 IYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEK 280 (361)
T ss_pred EEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEE
Confidence 88876543 56788899999999999997 4 4899999988 9999997421000 00000000000 1112
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
+-+ -+.|++.|+.+.|.--|..|+++++||+|++|.-+
T Consensus 281 vs~--~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 281 VSE--LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eee--ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 222 34577899999999999999999999999999864
No 96
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=130.67 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=94.4
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
+...+-||.-.....+..+-+|.+-|+.|+|-++|..|.+++.++..|-+||+.-. + ..+|+|.
T Consensus 228 Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~ 291 (406)
T KOG2919|consen 228 YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALE 291 (406)
T ss_pred ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhh
Confidence 34456667666778888899999999999999999999999998888999999642 2 5788886
Q ss_pred c--ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccc-cccCCCCCCCCcccCc
Q 003221 427 R--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPV 484 (838)
Q Consensus 427 R--G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~-~~~H~~~~~~~~~~p~ 484 (838)
| +.|+.+|+ ....|+|+|||+|+.||.|++|++..+|.++. +..|..-+.+..+.|.
T Consensus 292 rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 292 RHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred hhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 5 44555665 44569999999999999999999999887543 3455444556566665
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.38 E-value=7.6e-11 Score=129.66 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=165.8
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
-..++.-.|+|+.|.+.. ..++....+.-|+||.+... ....++.-|+++|..+..-|++
T Consensus 256 ~~~Gh~kki~~v~~~~~~------~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tg------------- 315 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDL------DTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTG------------- 315 (506)
T ss_pred hccCcceEEEEEEeccch------hheeecCCcceEEeeccccc-cCccccccccccceeeeeccCC-------------
Confidence 356677778999998722 23444444456999999654 4566777899999999999864
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C--cEEEEEeCCC--eE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S--SVCMVRCSPR--IV 205 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s--~V~sV~~s~~--iL 205 (838)
.+|+..+ .+++..|.|.++|..+...... + .+.+.+|.|| ++
T Consensus 316 eYllsAs---------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 316 EYLLSAS---------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred cEEEEec---------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 2443211 1368899999999988777654 3 4799999998 45
Q ss_pred EEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCC
Q 003221 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (838)
Q Consensus 206 aV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~ 284 (838)
+.+. ++.|+|||+......-.+..|..| + +-|+|+.+
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~----------------v----k~i~FsEN---------------------- 400 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGP----------------V----KAISFSEN---------------------- 400 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCc----------------e----eEEEeccC----------------------
Confidence 5555 457999999976544333333222 1 33455442
Q ss_pred CCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003221 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (838)
Q Consensus 285 stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~ 364 (838)
+|+- + ++..||.|++||++..+...+
T Consensus 401 ------------------------------GY~L--------------------a----t~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 401 ------------------------------GYWL--------------------A----TAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred ------------------------------ceEE--------------------E----EEecCCeEEEEEehhhcccce
Confidence 1221 0 234577899999998887777
Q ss_pred ecc-CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 365 FKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 365 ~~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
|.- -..+|.+++|+++|++|+.++. .++||-.... ...| .++.++. .+.+....+.|-.+.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~---------~k~W----~~~~~~~--~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKK---------TKSW----TEIKELA--DHSGLSTGVRFGEHA 488 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecc---eeEEEEEecc---------cccc----eeeehhh--hcccccceeeecccc
Confidence 764 3358999999999999999955 4777765321 1122 3444442 123457789999999
Q ss_pred CEEEEEeCCCeEEEEec
Q 003221 444 QWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l 460 (838)
++|+++|.|...+|+.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999999876
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.5e-11 Score=124.53 Aligned_cols=264 Identities=14% Similarity=0.212 Sum_probs=164.7
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCC--ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g--~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
.|+|.|.-+-.|- -++.|+++.. ..++|+.+.+.+ .+...|.+|.|||.-+.+. .|- | +
T Consensus 9 ~H~D~IHda~lDy-------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk-------~-G-- 70 (299)
T KOG1332|consen 9 QHEDMIHDAQLDY-------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPK-------F-G-- 70 (299)
T ss_pred hhhhhhhHhhhhh-------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccc-------c-C--
Confidence 4566665554443 1344555555 559999998877 4567788999999999987 221 2 2
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEeCCC----
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR---- 203 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~---f~s~V~sV~~s~~---- 203 (838)
.+||.++ .+++|.||.-..|+--+..+ +.+.|.+|++.|.
T Consensus 71 ~iLAScs---------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl 117 (299)
T KOG1332|consen 71 TILASCS---------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGL 117 (299)
T ss_pred cEeeEee---------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccccce
Confidence 2777643 24899999998885444333 4579999999885
Q ss_pred eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCC
Q 003221 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
+|+++. ++.|.|++..+- ...+-. ....+ ..+|.+.+...| .
T Consensus 118 ~LacasSDG~vsvl~~~~~-g~w~t~--ki~~a-------H~~GvnsVswap-------a-------------------- 160 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSS-GGWTTS--KIVFA-------HEIGVNSVSWAP-------A-------------------- 160 (299)
T ss_pred EEEEeeCCCcEEEEEEcCC-CCccch--hhhhc-------cccccceeeecC-------c--------------------
Confidence 566644 668998887653 111100 01000 011233333211 0
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc--
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-- 360 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~-- 360 (838)
+.| |+++..-..+..+. ++++..|..|+||++.+++
T Consensus 161 ---~~~--g~~~~~~~~~~~kr-------------------------------------lvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 161 ---SAP--GSLVDQGPAAKVKR-------------------------------------LVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred ---CCC--ccccccCcccccce-------------------------------------eeccCCccceeeeecCCcchh
Confidence 000 01110000000011 1135668899999999864
Q ss_pred EEEEeccCCCCeEEEEECCCC----CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003221 361 IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~s 436 (838)
.-.+|++|+.-|..+++.|.- ..||+||+||+ +.||..... + ..|.. ..|.+| +..++.
T Consensus 199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e------~---e~wk~--tll~~f-----~~~~w~ 261 (299)
T KOG1332|consen 199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE------Y---EPWKK--TLLEEF-----PDVVWR 261 (299)
T ss_pred hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc------c---Ccccc--cccccC-----CcceEE
Confidence 335699999999999999973 58999999998 569987421 1 11221 223332 346999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 437 IaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
++||..|..||++..|+.|.+|.=+..|
T Consensus 262 vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 262 VSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred EEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 9999999999999999999999865544
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.3e-12 Score=136.88 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=150.1
Q ss_pred CCEEEEEECCCCeEEEEEeC---------CCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEe-ecCCcccCCC
Q 003221 172 PTAVRFYSFQSHCYEHVLRF---------RSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQ 238 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f---------~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~-t~p~p~~~~~ 238 (838)
++-+.+||..+|+.-+.|++ ...|+++.|+++ .||.|. +++|++|.+.|++|+..+. .|..
T Consensus 234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk------ 307 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK------ 307 (508)
T ss_pred cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc------
Confidence 37899999999998888864 358999999997 777755 6789999999999988775 2332
Q ss_pred CccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccccccccc
Q 003221 239 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (838)
Q Consensus 239 ~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~ 318 (838)
|..+ |.|+-+.. | +
T Consensus 308 ---------Gvt~-----l~FSrD~S----------q-----------------------------i------------- 321 (508)
T KOG0275|consen 308 ---------GVTC-----LSFSRDNS----------Q-----------------------------I------------- 321 (508)
T ss_pred ---------CeeE-----EEEccCcc----------h-----------------------------h-------------
Confidence 2222 23332110 0 0
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 003221 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (838)
Q Consensus 319 ~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (838)
.+++.|.+|+|--+.+++++..|++|++-|+...|.+||..+.+||.||+ |+||+
T Consensus 322 ------------------------LS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW~ 376 (508)
T KOG0275|consen 322 ------------------------LSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVWH 376 (508)
T ss_pred ------------------------hcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEec
Confidence 02456889999999999999999999999999999999999999999887 99999
Q ss_pred cCCCcccC---CCCCC-----------------ccccCC-------cceEEEEEecccc-cccEEEEEEccCCCEEEEEe
Q 003221 399 IMPSCMRS---GSGNH-----------------KYDWNS-------SHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 399 i~p~~~~~---~~G~~-----------------~~~~~~-------~~~~l~~L~RG~t-~a~I~sIaFSpDg~~Las~S 450 (838)
..+....+ ..|.. .++.+. ..+.+..+..|.. .....+.+.||-|.|+.+.+
T Consensus 377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 86521100 00100 000000 0122222322321 12355678999999999999
Q ss_pred CCCeEEEEecCCCCCccccccCCCCCCCCcccC
Q 003221 451 SKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (838)
Q Consensus 451 ~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p 483 (838)
.|+.+.-|.+...+-+..+.-|-..+.+..-+|
T Consensus 457 ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 457 EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred cCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 999999999988887777776755555544444
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.4e-10 Score=114.46 Aligned_cols=253 Identities=14% Similarity=0.117 Sum_probs=168.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce----eE-EeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF----NE-LVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v----~e-lls~hdg~V~~l~~lP~p~~~~~~d~F~~ 128 (838)
+|..|..+.+-.| +.+|+.|..+. +++.-.+. +.+ .+ -++-|||.|+.++|+-+|..
T Consensus 88 hkgsiyc~~ws~~-------geliatgsndk~ik~l~fn~-dt~~~~g~dle~nmhdgtirdl~fld~~~s--------- 150 (350)
T KOG0641|consen 88 HKGSIYCTAWSPC-------GELIATGSNDKTIKVLPFNA-DTCNATGHDLEFNMHDGTIRDLAFLDDPES--------- 150 (350)
T ss_pred cCccEEEEEecCc-------cCeEEecCCCceEEEEeccc-ccccccCcceeeeecCCceeeeEEecCCCc---------
Confidence 5666666666552 57999999874 77765532 111 12 35789999999999976632
Q ss_pred CCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEE-EeCCCeEE
Q 003221 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMV-RCSPRIVA 206 (838)
Q Consensus 129 srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV-~~s~~iLa 206 (838)
..-+|+. ++ .+ +++|.+=|..+|+..+.+.- .+.|+++ .++.-.++
T Consensus 151 ~~~il~s--~g----ag--------------------------dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~ 198 (350)
T KOG0641|consen 151 GGAILAS--AG----AG--------------------------DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFA 198 (350)
T ss_pred CceEEEe--cC----CC--------------------------cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEE
Confidence 2235543 11 01 37888889999999999865 4678877 55777777
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
.+. +.+|++||++-..+..++.+.-.. . |...-|+
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~---------~--glessav--------------------------------- 234 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHD---------G--GLESSAV--------------------------------- 234 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccC---------C--Cccccee---------------------------------
Confidence 766 457999999877776665431110 0 0111111
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
+.++. ++.++.++ ++..|....+||+..++.+..|
T Consensus 235 ---------aav~v--------------------------------dpsgrll~----sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 235 ---------AAVAV--------------------------------DPSGRLLA----SGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred ---------EEEEE--------------------------------CCCcceee----eccCCCceEEEEeeCCceeeee
Confidence 00000 00011111 2455677999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
..|+..|.|+.|||...+|.|+|-| ..|++=|++ |... ..|-...-+.+...+-.+.|.|..--
T Consensus 270 ~phsadir~vrfsp~a~yllt~syd-~~ikltdlq--------gdla-------~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGAHYLLTCSYD-MKIKLTDLQ--------GDLA-------HELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred CCCccceeEEEeCCCceEEEEeccc-ceEEEeecc--------cchh-------hcCceEEEEeccCceEEEEecCccce
Confidence 9999999999999999999999995 569999985 3210 11212222334444555899999888
Q ss_pred EEEEeCCCeEEEEecC
Q 003221 446 IAIVSSKGTCHVFVLS 461 (838)
Q Consensus 446 Las~S~dGTVhIw~l~ 461 (838)
+.++|.|.|+.+|.++
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999999986
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.35 E-value=4e-11 Score=127.23 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=82.8
Q ss_pred CceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 348 AGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
--++++||+.+.++...- ..|+..|+++.+|+.|++-+|||.||. |++||=-. .+++..
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS-----------------~rCv~t 298 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS-----------------NRCVRT 298 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc-----------------HHHHHH
Confidence 346899999987764322 369999999999999999999999998 99999532 156767
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+.+.+..+.|.+..|+.+|+||.+++.|.+|++|.|.+.-
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 7666666789999999999999999999999999997643
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=4.1e-12 Score=147.07 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 346 DNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 346 ~~~G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
...|.+++||+.-. +...+|.||.+||.|+.++|++.+||||+.|+ .|+|||...+ ....+..
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~---------------~~~~~~t 259 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDS---------------RAKPKHT 259 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCC---------------CccceeE
Confidence 45688999999754 45678999999999999999999999999755 5999998531 0123333
Q ss_pred EecccccccEEEEEEccCCCE-EEEEeC--CCeEEEEecCCCC-CccccccCCCC
Q 003221 425 LHRGITSATIQDICFSHYSQW-IAIVSS--KGTCHVFVLSPFG-GDSGFQTLSSQ 475 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~-Las~S~--dGTVhIw~l~~~g-g~~~~~~H~~~ 475 (838)
.. |.++|..|.|.|+-++ ||+++. |-.||||||...- .-..+..|...
T Consensus 260 In---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~ 311 (839)
T KOG0269|consen 260 IN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS 311 (839)
T ss_pred Ee---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc
Confidence 33 5578999999999775 565554 4469999996543 33566777643
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.34 E-value=2.5e-10 Score=120.29 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=121.5
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eE-EEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCcccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IV-AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iL-aV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
+++|++||+.+++.+..+.....+..+.++++ .+ +++. ++.|++||+.+++....+..+..+
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------- 75 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-------------- 75 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--------------
Confidence 37899999999999999987777788888875 44 4443 568999999998765544322111
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
..+++.++. ..+.+
T Consensus 76 -------~~~~~~~~g---------------------------~~l~~-------------------------------- 89 (300)
T TIGR03866 76 -------ELFALHPNG---------------------------KILYI-------------------------------- 89 (300)
T ss_pred -------cEEEECCCC---------------------------CEEEE--------------------------------
Confidence 122232210 00000
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCC
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (838)
....++.|.+||+.+.+.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||...
T Consensus 90 ----------------~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~------ 146 (300)
T TIGR03866 90 ----------------ANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT------ 146 (300)
T ss_pred ----------------EcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC------
Confidence 1134678999999998888777643 34688999999999999998777788888743
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCC
Q 003221 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (838)
Q Consensus 408 ~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~g 464 (838)
+ ..+..+..+ ..+.+++|+|||++|++++ .+++|++|++....
T Consensus 147 -~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 -Y----------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred -C----------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 2 233333222 2357799999999986655 58999999998654
No 104
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.33 E-value=3.9e-11 Score=133.39 Aligned_cols=192 Identities=21% Similarity=0.310 Sum_probs=135.0
Q ss_pred CCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCcccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
.++|+|||++..-+.+.++ +.+.|..|..|-. +||.+. .+-|.|..+.|...-.++ ++++-+
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f-~~~sgq------------- 165 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF-TIDSGQ------------- 165 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce-ecCCCC-------------
Confidence 4899999999666666664 4579999988753 666544 567999999987643332 233210
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
. + |.|-|......+ +
T Consensus 166 -s--v--Rll~ys~skr~l------------------------------------------------------L------ 180 (673)
T KOG4378|consen 166 -S--V--RLLRYSPSKRFL------------------------------------------------------L------ 180 (673)
T ss_pred -e--E--EEeeccccccee------------------------------------------------------e------
Confidence 0 1 667776532110 0
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCccc
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMR 405 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~-~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~ 405 (838)
. .++.+|.|.+||+.....+..+ ++|..|...+||+|. ..+|||-+.| ..|++||+...
T Consensus 181 -----------~----~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D-kki~~yD~~s~--- 241 (673)
T KOG4378|consen 181 -----------S----IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD-KKINIYDIRSQ--- 241 (673)
T ss_pred -----------E----eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc-ceEEEeecccc---
Confidence 0 2457899999999988777655 589999999999996 5678888884 56999999421
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc-ccCCCCCCC
Q 003221 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLSSQGGD 478 (838)
Q Consensus 406 ~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~-~~H~~~~~~ 478 (838)
.....|. -.++...++|++||.+||+|+.+|.|..||+...+.++.. ..|...|..
T Consensus 242 --------------~s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 242 --------------ASTDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred --------------cccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 1111221 1236889999999999999999999999999888776654 567554443
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.33 E-value=1.2e-10 Score=122.97 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=98.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC-----eEEEEeCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-----IVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~-----iLaV~l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
.+|++||..|-+....+++++.||+-+++|- ++|++..+ +|++.|+..|..-++|.+|-.
T Consensus 124 htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-------------- 189 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-------------- 189 (397)
T ss_pred ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--------------
Confidence 8999999999999999999999999988873 78888765 899999999999998887644
Q ss_pred cceeEE--cc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCC
Q 003221 247 YGPMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (838)
Q Consensus 247 ~g~~Al--sp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p 322 (838)
+.+|+ +| .|+-|
T Consensus 190 -~vlaV~Wsp~~e~vLa--------------------------------------------------------------- 205 (397)
T KOG4283|consen 190 -GVLAVEWSPSSEWVLA--------------------------------------------------------------- 205 (397)
T ss_pred -ceEEEEeccCceeEEE---------------------------------------------------------------
Confidence 24554 22 12111
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCC------------Cc---EEEEeccCCCCeEEEEECCCCCEEEEE
Q 003221 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------------RA---IISQFKAHTSPISALCFDPSGTLLVTA 387 (838)
Q Consensus 323 ~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s------------~~---~v~~~~aH~spIsaLaFSPdGtlLATA 387 (838)
+++.||.|++||+.. .+ .+.+-.+|.+.|+.+||+.||.+|+++
T Consensus 206 ---------------------tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 206 ---------------------TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ---------------------ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 234466677777642 11 223345799999999999999999999
Q ss_pred ecCCCEEEEEecCC
Q 003221 388 SVYGNNINIFRIMP 401 (838)
Q Consensus 388 S~dGt~IrVwdi~p 401 (838)
+.|++ ||+|+...
T Consensus 265 gtd~r-~r~wn~~~ 277 (397)
T KOG4283|consen 265 GTDDR-IRVWNMES 277 (397)
T ss_pred cCccc-eEEeeccc
Confidence 99776 99999853
No 106
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.33 E-value=4.2e-12 Score=140.94 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=154.5
Q ss_pred eeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEE
Q 003221 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (838)
Q Consensus 97 v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~ 176 (838)
...++++|...|++++|.|. +..||+. + ++ +++|+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~------------~~hLlLS--~---------------------gm----------D~~vk 240 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPK------------KGHLLLS--G---------------------GM----------DGLVK 240 (503)
T ss_pred heeeccCCccccchhhhccc------------eeeEEEe--c---------------------CC----------CceEE
Confidence 34566778888999999873 2235542 1 22 38999
Q ss_pred EEECCC-CeEEEEEeCC-CcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeE
Q 003221 177 FYSFQS-HCYEHVLRFR-SSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (838)
Q Consensus 177 IWDl~t-g~~V~tL~f~-s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~A 251 (838)
||++.. +.+++++..+ -+|.+++|+.+ +|.++++..|++||+.||+++.++.+.-.| .+
T Consensus 241 lW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~----------------~c 304 (503)
T KOG0282|consen 241 LWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP----------------TC 304 (503)
T ss_pred EEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc----------------ee
Confidence 999987 8899998755 59999999874 899999999999999999998887653222 01
Q ss_pred EcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccC
Q 003221 252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 331 (838)
Q Consensus 252 lspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~ 331 (838)
+ -|-+ ++.
T Consensus 305 v-----kf~p-------------------------------------------------------------d~~------ 312 (503)
T KOG0282|consen 305 V-----KFHP-------------------------------------------------------------DNQ------ 312 (503)
T ss_pred e-----ecCC-------------------------------------------------------------CCC------
Confidence 1 1111 000
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCC
Q 003221 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (838)
Q Consensus 332 n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~ 411 (838)
+ .+..|..++.|+-||+.+++++..+..|-++|..+.|=++|+.++|+|.+++ +|||+....
T Consensus 313 ----n----~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riWe~~~~--------- 374 (503)
T KOG0282|consen 313 ----N----IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIWENRIP--------- 374 (503)
T ss_pred ----c----EEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEEEcCCC---------
Confidence 0 0113567899999999999999999999999999999999999999999765 999998531
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 412 ~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..+-+...-.++ ..-+|.-+|.+.|+++=|.|+-+-||.+.+.
T Consensus 375 -------v~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 375 -------VPIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred -------ccchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccc
Confidence 012233332322 4678999999999999999999999997653
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8e-10 Score=118.02 Aligned_cols=241 Identities=15% Similarity=0.227 Sum_probs=158.8
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEe--cCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGY--QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~--~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
.|=.+.-++|-. + ...++.... ++.+|..++.+ ....+.+.+|...|..|.+.|.. . .
T Consensus 55 kkyG~~~~~Fth----~--~~~~i~sStk~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~-----------d--~ 114 (311)
T KOG1446|consen 55 KKYGVDLACFTH----H--SNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKD-----------D--T 114 (311)
T ss_pred ccccccEEEEec----C--CceEEEccCCCCCceEEEEeec-CceEEEcCCCCceEEEEEecCCC-----------C--e
Confidence 344455566643 2 134444444 45799999965 66788999999999999999842 1 2
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEeCCCeEEEEeCC
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGLAT 211 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s-~V~sV~~s~~iLaV~l~~ 211 (838)
.+ ++ + .+++|++||+|+.++...+...+ +|.+..-..-++|++...
T Consensus 115 Fl--S~---------------------S----------~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 115 FL--SS---------------------S----------LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EE--ec---------------------c----------cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 22 21 1 13799999999999888887655 555544444588888876
Q ss_pred -eEEEEECCCCce-eeEEeecCCcccCCCCccccccccceeEEcccE--EEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 212 -QIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRW--LAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 212 -~I~IwD~~t~e~-l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~--LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
.|++||++.... .++....+.+ .. .+| |.|+++
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~---------------~~---~ew~~l~FS~d------------------------- 198 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDN---------------DE---AEWTDLEFSPD------------------------- 198 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCC---------------Cc---cceeeeEEcCC-------------------------
Confidence 899999997632 2211111100 00 011 122221
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
+|.+.+ ....+.+.+.|.-+|..+..|..
T Consensus 199 -----------------------------------------------GK~iLl----sT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 199 -----------------------------------------------GKSILL----STNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred -----------------------------------------------CCEEEE----EeCCCcEEEEEccCCcEeeeEee
Confidence 222221 23467789999999999999988
Q ss_pred CCCCe---EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003221 368 HTSPI---SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (838)
Q Consensus 368 H~spI---saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (838)
|...- ...+|+|||+++.+++.||+ |.||++.. | .++..+ +|.....+.++.|+|---
T Consensus 228 ~~~~~~~~~~a~ftPds~Fvl~gs~dg~-i~vw~~~t-------g----------~~v~~~-~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 228 YPNAGNLPLSATFTPDSKFVLSGSDDGT-IHVWNLET-------G----------KKVAVL-RGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred ccCCCCcceeEEECCCCcEEEEecCCCc-EEEEEcCC-------C----------cEeeEe-cCCCCCCccccccCCcee
Confidence 76543 56789999999999999887 99999964 4 466676 454456789999999655
Q ss_pred EEEEEeCCCeEEEEecCCC
Q 003221 445 WIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 445 ~Las~S~dGTVhIw~l~~~ 463 (838)
.+++ .+..+-+|-.+..
T Consensus 289 mf~s--a~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 289 MFVS--ASSNLVFWLPDED 305 (311)
T ss_pred eeee--cCceEEEEecccc
Confidence 5554 4556778876543
No 108
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=6.8e-11 Score=130.41 Aligned_cols=179 Identities=16% Similarity=0.133 Sum_probs=122.3
Q ss_pred CCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC---eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~---iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
++||++||+.+|++..++.+ ...|.++.+++. +|+. +.+++|.++|.+...+. .
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------~-------------- 323 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------G-------------- 323 (463)
T ss_pred CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-------C--------------
Confidence 48999999999999999985 569999999875 4554 55789999998852110 0
Q ss_pred cceeEEcccEEEEeCC-CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCC
Q 003221 247 YGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (838)
Q Consensus 247 ~g~~Alspr~LAys~~-~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs 325 (838)
+..-+.+. ..++|+- +
T Consensus 324 --------~~wk~~g~VEkv~w~~----------------------------------------------~--------- 340 (463)
T KOG0270|consen 324 --------KEWKFDGEVEKVAWDP----------------------------------------------H--------- 340 (463)
T ss_pred --------ceEEeccceEEEEecC----------------------------------------------C---------
Confidence 01111111 1222330 0
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCc
Q 003221 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSC 403 (838)
Q Consensus 326 ~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~ 403 (838)
+..+ +..+..+|+|+-+|+++. +++.+++||..+|++|++++. -.+|+|+|.++ ++++|++....
T Consensus 341 -se~~-----------f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~-~Vklw~~~~~~ 407 (463)
T KOG0270|consen 341 -SENS-----------FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK-VVKLWKFDVDS 407 (463)
T ss_pred -Ccee-----------EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc-eEEEEeecCCC
Confidence 0000 012356899999999875 889999999999999999996 44899999965 59999984310
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCC
Q 003221 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 404 ~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~g 464 (838)
+ ...+.+-+++-| ..|.++.|+- -+||.|+.++-++||++....
T Consensus 408 -----~------~~v~~~~~~~~r------l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 408 -----P------KSVKEHSFKLGR------LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred -----C------cccccccccccc------eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 0 111223334322 6778888874 468889999999999997653
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.32 E-value=1.8e-10 Score=132.44 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=135.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC---cEEE-EEe---CCCeEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS---SVCM-VRC---SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s---~V~s-V~~---s~~iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~ 244 (838)
++++||+-+.++++.+..|.+ -|.. +++ .+.+|++ +.+..|.+|.+.+.+.+++|..|..-
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn----------- 103 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN----------- 103 (745)
T ss_pred CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc-----------
Confidence 789999998888877665543 2211 333 2334555 45678999999999999999988652
Q ss_pred cccceeEEcc----cEEEEe-CCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccc
Q 003221 245 VGYGPMAVGP----RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (838)
Q Consensus 245 ~g~g~~Alsp----r~LAys-~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~ 319 (838)
.|+++. ..|.-+ +.++.+|..|...-. +.++.
T Consensus 104 ----VC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~-------------------------------------l~gH~-- 140 (745)
T KOG0301|consen 104 ----VCSLSIGEDGTLISGSWDSTAKVWRIGELVYS-------------------------------------LQGHT-- 140 (745)
T ss_pred ----eeeeecCCcCceEecccccceEEecchhhhcc-------------------------------------cCCcc--
Confidence 344432 212111 224556654332100 00000
Q ss_pred cCCCCCCCCccCCCcccccccc---ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEE
Q 003221 320 LLPDGSSSPVSPNSVWKVGRHA---GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 396 (838)
Q Consensus 320 ~~p~gs~s~~s~n~~~k~~~~~---~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 396 (838)
.+.|.+..++ ..+|+.|.+|++|.- ++.+.+|.+|+.-|..|++=+++. +++|+.||. ||.
T Consensus 141 ------------asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~ 204 (745)
T KOG0301|consen 141 ------------ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRL 204 (745)
T ss_pred ------------hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEE
Confidence 0011111111 125778999999965 778999999999999999999865 668999775 999
Q ss_pred EecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 397 wdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
|++. | ..+++.+ |++ .-|++|+-.++++.+++++.|+|++||+..
T Consensus 205 w~~~--------g----------e~l~~~~-ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 205 WDLD--------G----------EVLLEMH-GHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred Eecc--------C----------ceeeeee-ccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9993 4 4677764 544 469999988999999999999999999986
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=1e-11 Score=141.64 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=91.9
Q ss_pred cCCCceEEEEECCCCc--E--------EEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcc
Q 003221 345 MDNAGIVVVKDFVTRA--I--------ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~--~--------v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~ 413 (838)
|+-|+.|.|||+.++. . ...+. +|..+|.+|+-++.|+++++|+..+ .||+||... +
T Consensus 136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt-------~---- 203 (735)
T KOG0308|consen 136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRT-------C---- 203 (735)
T ss_pred cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-ceEEecccc-------c----
Confidence 4568889999998762 1 22333 8899999999999999999999965 599999864 2
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 414 ~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
.++.+|+ |++. .|..|..++||+.+.++|+||||++|+|.......++..|..
T Consensus 204 ------~kimkLr-GHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 204 ------KKIMKLR-GHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ------cceeeee-cccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 5788886 7654 699999999999999999999999999999888888888854
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.30 E-value=2.3e-10 Score=131.60 Aligned_cols=214 Identities=15% Similarity=0.144 Sum_probs=153.6
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
.+++..|.|..+-||.+.. .+-.-+|.+|...|+++....++ .| ++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~--------------~~--iS----------------- 117 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDG--------------TL--IS----------------- 117 (745)
T ss_pred cceEeecccceEEEEecCC-CCchhhhhccccceeeeecCCcC--------------ce--Ee-----------------
Confidence 3455555555588999954 55567889999999999865321 22 23
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC-eEE-EEeCCeEEEEECCCCceeeEEeecC
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR-IVA-VGLATQIYCFDALTLENKFSVLTYP 231 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~-iLa-V~l~~~I~IwD~~t~e~l~tL~t~p 231 (838)
|+|| +|+++|-. ++++.+++ +...|++|..-+. .++ .+.+..|++|.. +++++++..|.
T Consensus 118 ----gSWD----------~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHt 179 (745)
T KOG0301|consen 118 ----GSWD----------STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHT 179 (745)
T ss_pred ----cccc----------cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccch
Confidence 6788 89999964 55666665 4579999987553 444 455668999997 45566766654
Q ss_pred CcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccc
Q 003221 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (838)
Q Consensus 232 ~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~k 311 (838)
.- + |-||.-++.
T Consensus 180 D~------------------V--RgL~vl~~~------------------------------------------------ 191 (745)
T KOG0301|consen 180 DC------------------V--RGLAVLDDS------------------------------------------------ 191 (745)
T ss_pred hh------------------e--eeeEEecCC------------------------------------------------
Confidence 41 1 333332210
Q ss_pred cccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC
Q 003221 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391 (838)
Q Consensus 312 tls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG 391 (838)
.+.++++||.|+.||+ +++++....+|++-|.+++..+++.+++|+++|+
T Consensus 192 -----------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 192 -----------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDR 241 (745)
T ss_pred -----------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCc
Confidence 0113578999999999 7888999999999999999888999999999977
Q ss_pred CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 392 t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a-~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+ +|||+.. ++...+.- ++ .||++.+=++|. |++|++||-|+||...+
T Consensus 242 t-lriW~~~-------------------e~~q~I~l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 242 T-LRIWKKD-------------------ECVQVITL---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred e-EEEeecC-------------------ceEEEEec---CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 6 9999973 24444432 22 699999988876 67888999999999864
No 112
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.29 E-value=1.2e-11 Score=134.96 Aligned_cols=122 Identities=16% Similarity=0.284 Sum_probs=104.7
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 343 ~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
.+++.||+|+|||+...+.-..|++|.--|.++.+.|.-.+||++|.|. .|++||... | .++
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprS-------g----------~cl 257 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRS-------G----------SCL 257 (464)
T ss_pred EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc-eeEeecCCC-------c----------chh
Confidence 3678899999999999888889999999999999999999999999955 799999864 4 477
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccCc
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 484 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~ 484 (838)
..|+ +++ ..|..+.|++++.||+++|.|..+++|||...++...+++|-..+.....+|+
T Consensus 258 ~tlh-~HK-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 258 ATLH-GHK-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred hhhh-hcc-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 7774 333 36999999999999999999999999999988888889999766655555665
No 113
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.28 E-value=4.9e-10 Score=121.33 Aligned_cols=206 Identities=17% Similarity=0.204 Sum_probs=156.1
Q ss_pred eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEE
Q 003221 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (838)
Q Consensus 98 ~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~I 177 (838)
...+..|.++|.++.+.|+ .+|+|. |+ + +..-.|
T Consensus 57 ~~tF~~H~~svFavsl~P~-------------~~l~aT--GG-----g--------------------------DD~Afl 90 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPN-------------NNLVAT--GG-----G--------------------------DDLAFL 90 (399)
T ss_pred eeehhhcCCceEEEEeCCC-------------CceEEe--cC-----C--------------------------CceEEE
Confidence 4567889999999999984 246543 21 1 257889
Q ss_pred EECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEc
Q 003221 178 YSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (838)
Q Consensus 178 WDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Als 253 (838)
|+..+|+...++. +...|.++.|+.+ +||.+. ++.|.||+..++.....+.. +.. -+
T Consensus 91 W~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~---------------di--- 151 (399)
T KOG0296|consen 91 WDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVE---------------DI--- 151 (399)
T ss_pred EEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccC---------------ce---
Confidence 9999999888884 6689999999876 788755 67899999999988777652 110 11
Q ss_pred ccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCC
Q 003221 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (838)
Q Consensus 254 pr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~ 333 (838)
.||-.-+. |+
T Consensus 152 -eWl~WHp~--------------------------------a~------------------------------------- 161 (399)
T KOG0296|consen 152 -EWLKWHPR--------------------------------AH------------------------------------- 161 (399)
T ss_pred -EEEEeccc--------------------------------cc-------------------------------------
Confidence 34432210 00
Q ss_pred ccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcc
Q 003221 334 VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (838)
Q Consensus 334 ~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~ 413 (838)
. ...|..||.|.+|.+.++.....|.+|..++++=.|.|||++++|+..||+ |++|+..+ |
T Consensus 162 ---i----llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~kt-------g---- 222 (399)
T KOG0296|consen 162 ---I----LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPKT-------G---- 222 (399)
T ss_pred ---E----EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecCC-------C----
Confidence 0 002567999999999998899999999999999999999999999999886 99999975 4
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 414 ~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+.++++. +.......++.++.++..+..++.++.+++-+....+
T Consensus 223 ------~p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 223 ------QPLHKIT-QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred ------ceeEEec-ccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 4666653 2223357789999999999999999999987765543
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=9e-12 Score=143.41 Aligned_cols=215 Identities=13% Similarity=0.183 Sum_probs=152.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.++++.|..+- +-+|.+.... ...-|-.|+++|.+|.+.+. .-||+. +
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f~~~-------------E~Llaa--g--------------- 88 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTFDTS-------------ERLLAA--G--------------- 88 (825)
T ss_pred ceeeccCCCceeeccccccCCc-hhheeeccCCcceeeecCcc-------------hhhhcc--c---------------
Confidence 36777776664 6699986533 22336689999999998742 124432 1
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEEE-eCCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAVG-LATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~l~tL~t 229 (838)
. ..++|+|||+..++.+++|.. ...+.+|.|+|- +.|.+ .+..+++||.+..-|.++...
T Consensus 89 ------s----------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 89 ------S----------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred ------c----------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 1 137999999999999999964 579999999995 45544 355799999997777777655
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
|+-- . +.|++.++. .+++
T Consensus 153 ~~~v-------------v-------~~l~lsP~G----------------------------r~v~-------------- 170 (825)
T KOG0267|consen 153 HTRV-------------V-------DVLRLSPDG----------------------------RWVA-------------- 170 (825)
T ss_pred Ccce-------------e-------EEEeecCCC----------------------------ceee--------------
Confidence 4320 2 333433321 0000
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~ 389 (838)
++..|.+|+|||+..++....|+.|..+|.+|.|+|..-+|+++|.
T Consensus 171 ----------------------------------~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 171 ----------------------------------SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ----------------------------------ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC
Confidence 1334789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003221 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 390 dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
|++ +++||+++. +.+-. .+.....|.+++|+||++.+++|-..
T Consensus 217 d~t-v~f~dletf-----------------e~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRT-VRFWDLETF-----------------EVISS--GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred Cce-eeeecccee-----------------EEeec--cCCccCCceeeeecCCceeeecCchh
Confidence 765 999999641 11111 12223479999999999988876554
No 115
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2e-11 Score=146.69 Aligned_cols=247 Identities=19% Similarity=0.246 Sum_probs=168.5
Q ss_pred EEeeccCCCCCC--CeEEEEEecCc-EEEEEccC--CCceeEE---eeeccCcEEEEEEecCCCCCCCCCCcccCCcEEE
Q 003221 63 GFDRLEYGPSVF--KQVLLLGYQNG-FQVLDVED--ASNFNEL---VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (838)
Q Consensus 63 ~Fd~l~~~~~~~--~~vL~lG~~~G-~qVWdv~~--~g~v~el---ls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLa 134 (838)
+|++|..+.... .-+|+.|.++| |-+||... .++-.++ .+.|.|+|+.|.|.| |..+ +||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~----------~q~n--lLA 133 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP----------FQGN--LLA 133 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc----------cCCc--eee
Confidence 466654433221 24899999887 99999976 2444444 457889999999987 4443 775
Q ss_pred EEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEeCCC---eEEEE
Q 003221 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSPR---IVAVG 208 (838)
Q Consensus 135 vV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL---~f~s~V~sV~~s~~---iLaV~ 208 (838)
. |++ .+.|.|||+..-+.-.++ .+.+.|..+++|++ +||.+
T Consensus 134 S--Ga~-------------------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 134 S--GAD-------------------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred c--cCC-------------------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence 3 321 268999999875543333 35679999999986 78887
Q ss_pred eCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
... ++.|||++.-+.+..+..++. .+.+ .-|+ |+
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~----------------~~~~--S~l~--------Wh------------------- 215 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPG----------------RMHC--SVLA--------WH------------------- 215 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCC----------------ccce--eeee--------eC-------------------
Confidence 765 899999997655444433222 1111 1122 32
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEec
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK 366 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~-~~v~~~~ 366 (838)
|++-+.++. | ...+..-.|.+||++.- ..+..++
T Consensus 216 P~~aTql~~---------A------------------------------------s~dd~~PviqlWDlR~assP~k~~~ 250 (1049)
T KOG0307|consen 216 PDHATQLLV---------A------------------------------------SGDDSAPVIQLWDLRFASSPLKILE 250 (1049)
T ss_pred CCCceeeee---------e------------------------------------cCCCCCceeEeecccccCCchhhhc
Confidence 010000000 0 01234557999998753 4567889
Q ss_pred cCCCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-
Q 003221 367 AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ- 444 (838)
Q Consensus 367 aH~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~- 444 (838)
+|...|.+|.+.+.+ ++|+|++.|++ |.+|+.++ | +.+++|-++ ...+.++.|+|-.-
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~~--~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPAQ--GNWCFDVQWCPRNPS 310 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCCC--CcceeeeeecCCCcc
Confidence 999999999999987 89999999887 77999864 3 578888653 23799999999755
Q ss_pred EEEEEeCCCeEEEEecCCCC
Q 003221 445 WIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 445 ~Las~S~dGTVhIw~l~~~g 464 (838)
.++++|.||+|-||.|....
T Consensus 311 ~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhhheeccceeeeeeecCC
Confidence 89999999999999997543
No 116
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=1.2e-10 Score=127.28 Aligned_cols=240 Identities=14% Similarity=0.216 Sum_probs=153.6
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeec-cCcEEEEEEecCCCCCCCCCCcccC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~h-dg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+++...|.+..|-- | ++.+|++|.+.-+.+||++ +|+++.++... ...|.+.++.|++ |+
T Consensus 264 tlvgh~~~V~yi~wSP----D--dryLlaCg~~e~~~lwDv~-tgd~~~~y~~~~~~S~~sc~W~pDg--------~~-- 326 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSP----D--DRYLLACGFDEVLSLWDVD-TGDLRHLYPSGLGFSVSSCAWCPDG--------FR-- 326 (519)
T ss_pred eeecccCceEEEEECC----C--CCeEEecCchHheeeccCC-cchhhhhcccCcCCCcceeEEccCC--------ce--
Confidence 4567788888888844 2 3788899988899999995 57777776543 5678999999964 33
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C-CcEEEEEeCCC---e
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R-SSVCMVRCSPR---I 204 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~-s~V~sV~~s~~---i 204 (838)
+ |+| + .++++..||+... .....+. + -.|+++++..+ +
T Consensus 327 --~---V~G---------------------s----------~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 327 --F---VTG---------------------S----------PDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred --e---Eec---------------------C----------CCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEE
Confidence 2 332 1 2378999998543 3333332 1 36889998775 7
Q ss_pred EEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cE--EEEeCCCceeecCCCCCCcccCCC
Q 003221 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RW--LAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 205 LaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~--LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
++|+.+..|++|+..+..+..-+.++. | ...+.++- ++ +-.......+|+.-.-
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~-~-------------its~~iS~d~k~~LvnL~~qei~LWDl~e~-------- 427 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQ-P-------------ITSFSISKDGKLALVNLQDQEIHLWDLEEN-------- 427 (519)
T ss_pred EEEecccceeeechhhhhhhccccccC-c-------------eeEEEEcCCCcEEEEEcccCeeEEeecchh--------
Confidence 788888899999988766543333211 1 22333432 22 1233455677874100
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
.++.+| .| .+.+.|.-+-.-+|....+ . ++|+.|+.|.||+..+++
T Consensus 428 -----------~lv~kY---------~G--hkq~~fiIrSCFgg~~~~f--------i----aSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 428 -----------KLVRKY---------FG--HKQGHFIIRSCFGGGNDKF--------I----ASGSEDSKVYIWHRISGK 473 (519)
T ss_pred -----------hHHHHh---------hc--ccccceEEEeccCCCCcce--------E----EecCCCceEEEEEccCCc
Confidence 000000 01 1111221110001111011 1 257899999999999999
Q ss_pred EEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCC
Q 003221 361 IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p 401 (838)
.++.+.+|...|+|++++|. -.++|+||.||+ ||||-..+
T Consensus 474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred eeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence 99999999999999999995 679999999887 99998743
No 117
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.26 E-value=3.5e-11 Score=131.51 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=135.4
Q ss_pred ccCCCceEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccc
Q 003221 344 DMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~---------~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~ 414 (838)
++..|..|+||-+... +.+..+..|+..|+++.|+|+|.+||+|+.+| .|.+|......... ...-.+
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~--~d~e~~ 107 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFD--ADTEAD 107 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCcc--ccchhh
Confidence 4566778999988542 23577889999999999999999999999965 58899864210000 000011
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccCccCCCcccCCC
Q 003221 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSS 494 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~~~lp~~~~s~ 494 (838)
.....+.+.+..|| +...|++++|+||++++++++.|.++.+|++....-...+..|.+++.+..+-| .+.
T Consensus 108 ~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp--------l~q 178 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP--------LNQ 178 (434)
T ss_pred hCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch--------hhh
Confidence 11223455555677 456899999999999999999999999999988777778888988877754444 333
Q ss_pred CcccccccCCCCCeeeeeeeeeeecCCCcccccccccccccCcccccccceeeecccCccccccccccccCCcccEEEEc
Q 003221 495 GISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYT 574 (838)
Q Consensus 495 ~~~~q~~~~~~~~~~l~~v~rI~~~~~~w~~~~~~~~~~at~~~~~ps~~v~~~F~~~~~~~~~~~~~~~~~~~~LlV~s 574 (838)
+...+..++.+.-+.++...+|+.-..- -...++ .+ .-+ +.+.-+||++ +.+.+.|.|-++
T Consensus 179 yv~s~s~dr~~~~~~~~~~~~~~~~~~~--~m~~~~--~~----~~e-~~s~rLfhDe----------TlksFFrRlsfT 239 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKLKQVIKRHGLD--IMPAKA--FN----ERE-GKSTRLFHDE----------TLKSFFRRLSFT 239 (434)
T ss_pred hhhhhccCcccceeeeeeeeeeeeeeee--Eeeecc--cC----CCC-cceeeeeecC----------chhhhhhhcccC
Confidence 3333322332333333333333322100 000000 00 001 2355688888 788899999999
Q ss_pred CCceEEEEecccC
Q 003221 575 PSGYVVQHELLPS 587 (838)
Q Consensus 575 ~~G~l~~Y~L~p~ 587 (838)
|||.|+ |.|.
T Consensus 240 PdG~ll---vtPa 249 (434)
T KOG1009|consen 240 PDGSLL---VTPA 249 (434)
T ss_pred CCCcEE---Eccc
Confidence 999998 4554
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.26 E-value=3.7e-09 Score=118.28 Aligned_cols=95 Identities=19% Similarity=0.308 Sum_probs=74.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
|...|.-.|.|.++...+ +++.-..||++++|+|+|.+||.||.|+. |.||.+..+ | ....+
T Consensus 424 Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~------g----------~~y~r 485 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN------G----------RKYSR 485 (626)
T ss_pred eeccceEEEEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC------C----------cEEEE
Confidence 456788999999985544 44434899999999999999999999765 999999542 3 23333
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw 458 (838)
..+ .+.+.|+-+.||+|+++|.+-|-|-.+-.|
T Consensus 486 ~~k-~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 486 VGK-CSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eee-ecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 322 122689999999999999999999999999
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=6.1e-10 Score=118.29 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=164.4
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v-~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
..|.|.-..|-.. ...+|+.|..+| +|+|+++..|.. -+....|+|||-++.+.-++ ..
T Consensus 26 P~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-------------sk 86 (347)
T KOG0647|consen 26 PEDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-------------SK 86 (347)
T ss_pred cccchheeEeccc------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-------------ce
Confidence 3456666667541 135676776654 999999876433 23445688999999998432 24
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC----eEEEE
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR----IVAVG 208 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~----iLaV~ 208 (838)
+++.++ ++.+++|||.+++....-.+..+|..++|=+. .|+++
T Consensus 87 Vf~g~~---------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 87 VFSGGC---------------------------------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred EEeecc---------------------------------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec
Confidence 444222 36799999999987776677889999998543 55664
Q ss_pred e-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
. +.+|+.||.+....+.++.- |++ .|
T Consensus 134 SWDKTlKfWD~R~~~pv~t~~L---PeR----------------------vY---------------------------- 160 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVATLQL---PER----------------------VY---------------------------- 160 (347)
T ss_pred ccccceeecccCCCCeeeeeec---cce----------------------ee----------------------------
Confidence 4 78999999997766655432 211 01
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
|+|....++- .+..+..|.||++.++. ..|+.
T Consensus 161 ----------a~Dv~~pm~v------------------------------------Vata~r~i~vynL~n~~--te~k~ 192 (347)
T KOG0647|consen 161 ----------AADVLYPMAV------------------------------------VATAERHIAVYNLENPP--TEFKR 192 (347)
T ss_pred ----------ehhccCceeE------------------------------------EEecCCcEEEEEcCCCc--chhhh
Confidence 1111100000 01224568888887653 45666
Q ss_pred CCCC----eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc----c-cccEEEEE
Q 003221 368 HTSP----ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----T-SATIQDIC 438 (838)
Q Consensus 368 H~sp----IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~----t-~a~I~sIa 438 (838)
|.+| +.|++.-+|....|-||.+|. +-|..+.+. .+.....++.+|-. . -..|.+|+
T Consensus 193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~-------------~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 193 IESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP-------------NPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred hcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC-------------CccCceeEEEeccCCCCCCceEEecceE
Confidence 6665 578888888888899999997 778888641 01112456666621 1 12478999
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 439 FSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 439 FSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
|.|.-..|+++++|||.-.||-.........+.|
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 9999999999999999999997765444443444
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.25 E-value=3.1e-10 Score=125.75 Aligned_cols=219 Identities=16% Similarity=0.195 Sum_probs=149.7
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 73 ~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
.++++|++|..+- |+|||+++ .+-...+.+|-+.|..+.|--.+ ..| ...+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt------------~~l-ys~s-------------- 263 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGT------------SEL-YSAS-------------- 263 (479)
T ss_pred CCCcEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCc------------cce-eeee--------------
Confidence 4578888888765 89999964 55667789999999999876322 123 2222
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEeCCC--eEEEE-eCCeEEEEECCCCceeeEE
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSPR--IVAVG-LATQIYCFDALTLENKFSV 227 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL-~f~s~V~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~l~tL 227 (838)
.+++|++|++....++.++ .+++.|.+|....+ .+.|+ -+.++++|++..-..+ ..
T Consensus 264 -------------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-if 323 (479)
T KOG0299|consen 264 -------------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IF 323 (479)
T ss_pred -------------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-ee
Confidence 2488999999988888877 56789999988653 56666 4678999998432111 11
Q ss_pred eecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhc
Q 003221 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (838)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~ 307 (838)
..+. -++..+||-++. |
T Consensus 324 rg~~--------------------~sidcv~~In~~------------H------------------------------- 340 (479)
T KOG0299|consen 324 RGGE--------------------GSIDCVAFINDE------------H------------------------------- 340 (479)
T ss_pred eCCC--------------------CCeeeEEEeccc------------c-------------------------------
Confidence 1110 001222332210 0
Q ss_pred cccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCC-----------CCeEEE
Q 003221 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHT-----------SPISAL 375 (838)
Q Consensus 308 Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~-aH~-----------spIsaL 375 (838)
+.+|+.+|.|-+|++..++++.+.+ ||. ..|++|
T Consensus 341 ----------------------------------fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl 386 (479)
T KOG0299|consen 341 ----------------------------------FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL 386 (479)
T ss_pred ----------------------------------eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence 1135678999999999888776554 442 278999
Q ss_pred EECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003221 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 376 aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG 453 (838)
+.-|...++|++|.+|. +|+|.+.++. -....++.+. -..-|++|+|+++|++|++|-...
T Consensus 387 a~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred EecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc---cccEEEEEEEccCCCEEEEecccc
Confidence 99999999999999886 9999997631 0124666664 123599999999999988885443
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.25 E-value=5.8e-10 Score=128.19 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=83.7
Q ss_pred ccCCCceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~a---H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
++.+|..|+|||+.+++.+..|++ |.+.+-.+..+|+|-||||.-.| +++-+||.-. | +
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-ktl~~~Df~s-------g----------E 674 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-KTLCFVDFVS-------G----------E 674 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC-CceEEEEecc-------c----------h
Confidence 467899999999999999999985 77788999999999999998884 5599999843 3 4
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
++.+. .|+ ...|+.+.|++|.+.|.+.+.||.|.||.+..
T Consensus 675 cvA~m-~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 CVAQM-TGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhh-cCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 55444 354 34699999999999999999999999999865
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=123.00 Aligned_cols=105 Identities=12% Similarity=0.250 Sum_probs=83.0
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
++.+-.|.+||+. |+.+.++......-...+.||+|++||.++-.-. ++||.+-- ... |. -.+...+++
T Consensus 205 as~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f--~kd--G~-----fqev~rvf~ 273 (420)
T KOG2096|consen 205 ASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIF--TKD--GT-----FQEVKRVFS 273 (420)
T ss_pred ecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEe--ccC--cc-----hhhhhhhhe
Confidence 4556789999998 8999999988888888999999999999998544 89998732 122 21 112345667
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
| .|+. +.|..++||++++.+++.|.||+.+||+++-
T Consensus 274 L-kGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 274 L-KGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred e-ccch-hheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 6 4654 4599999999999999999999999999864
No 123
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=3.1e-10 Score=133.19 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=84.7
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+++-|-+|++|++...+++..|. |..-|+|++|+| |.+++++||.||+ ||||+|... .+..-
T Consensus 385 SSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv~W 447 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVVDW 447 (712)
T ss_pred eccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeEee
Confidence 35678999999999999998885 899999999999 7899999999886 999999431 11122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
++++ ..|+.++|+|||++.++|+.+|.|++|+.....-....
T Consensus 448 ~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 448 NDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred hhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 2332 36999999999999999999999999998765544433
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=2.2e-09 Score=114.65 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=130.5
Q ss_pred CCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC-----eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR-----IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~-----iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~ 245 (838)
+-+|+|||+++...+..|- +.+.|.++.|.+. +|..+.+++|.+||+...+++.++..|.-.
T Consensus 62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~------------ 129 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ------------ 129 (362)
T ss_pred CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc------------
Confidence 3689999999998877774 5579999999764 566677789999999999999999877542
Q ss_pred ccceeEEcc-cEEE--EeCC-CceeecC--CCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccc
Q 003221 246 GYGPMAVGP-RWLA--YASN-TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (838)
Q Consensus 246 g~g~~Alsp-r~LA--ys~~-~~~l~~~--G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~ 319 (838)
++-+++-| .-|| ..++ ...+|+. |+... + ..|..+-
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------------------v----------------~~L~~~a-- 171 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------------------V----------------LNLKNKA-- 171 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCccce-------------------e----------------eccCCcc--
Confidence 23455544 2233 3343 3456764 33210 0 0011100
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 320 ~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
....+++.. .... ......|-||.+.+-.+...+.-- ..+.++.|...+ .|++|..++ .|++||.
T Consensus 172 -----t~v~w~~~G--d~F~-----v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~-~L~vG~d~~-~i~~~D~ 236 (362)
T KOG0294|consen 172 -----TLVSWSPQG--DHFV-----VSGRNKIDIYQLDNASVFREIENP-KRILCATFLDGS-ELLVGGDNE-WISLKDT 236 (362)
T ss_pred -----eeeEEcCCC--CEEE-----EEeccEEEEEecccHhHhhhhhcc-ccceeeeecCCc-eEEEecCCc-eEEEecc
Confidence 011111111 1000 011235778877765443333221 347778886655 566777755 5999998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF--SpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.. + ..+..+. + |.++|.+|.| .|++.+|+++|+||.|+||+++...
T Consensus 237 ds-------~----------~~~~~~~-A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 237 DS-------D----------TPLTEFL-A-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CC-------C----------ccceeee-c-chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 53 2 3455553 3 4567999985 5789999999999999999997653
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.7e-08 Score=103.69 Aligned_cols=98 Identities=20% Similarity=0.308 Sum_probs=80.8
Q ss_pred ccCCCceEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccC
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~a--H-----~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~ 416 (838)
++++|.+|+.||+.-...+.++.. | .+.|.+++.+|+|++||++-.| ....+|||.- |
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-ssc~lydirg-------~------- 263 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-SSCMLYDIRG-------G------- 263 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-CceEEEEeeC-------C-------
Confidence 467899999999988777766642 3 3679999999999999999885 4589999952 2
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 417 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
+.++.++- +.+.|.|+.|||-..||.++|-|..|++=++.
T Consensus 264 ---r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 ---RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ---ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 56777653 56789999999999999999999999998874
No 126
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=9.3e-10 Score=117.44 Aligned_cols=220 Identities=15% Similarity=0.192 Sum_probs=139.5
Q ss_pred CeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+..++.|..+ .|+|||....-+. ..|..|.|.|++++|.|. +..+ .||. +.
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~ql-g~ll~HagsitaL~F~~~---------~S~s-hLlS--~s--------------- 104 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQL-GILLSHAGSITALKFYPP---------LSKS-HLLS--GS--------------- 104 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhh-cceeccccceEEEEecCC---------cchh-heee--ec---------------
Confidence 5667777655 7999999654444 445557999999999874 3222 3442 11
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC---eEEEEeCCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~---iLaV~l~~~I~IwD~~t~e~l~tL~t 229 (838)
.++.|.+|+...-+++++++-+ ..|..+++.|. -|.|+.++.++.||+.+|+.-+.+.-
T Consensus 105 -----------------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 105 -----------------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred -----------------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence 1378999999999999999754 58999999884 46678888999999999987665432
Q ss_pred cCCcccCCCCccccccccceeEEcc---cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alsp---r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la 306 (838)
...+ ..+.+.+ +|.....+.+.+|..+..+ +..+...+
T Consensus 168 ~~~a--------------t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~-----------------------v~~~i~~~-- 208 (362)
T KOG0294|consen 168 KNKA--------------TLVSWSPQGDHFVVSGRNKIDIYQLDNAS-----------------------VFREIENP-- 208 (362)
T ss_pred CCcc--------------eeeEEcCCCCEEEEEeccEEEEEecccHh-----------------------Hhhhhhcc--
Confidence 1111 0122222 2222222333333221110 00000000
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEE--ECCCCCEE
Q 003221 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALC--FDPSGTLL 384 (838)
Q Consensus 307 ~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLa--FSPdGtlL 384 (838)
.+.+ |. .+... ..+. .|..++.|.+||-.++.+...|.||...|-.+. -+|++.+|
T Consensus 209 ---~r~l---~~-----------~~l~~-~~L~----vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 209 ---KRIL---CA-----------TFLDG-SELL----VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred ---ccce---ee-----------eecCC-ceEE----EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 0000 00 00000 0111 356679999999999999999999999999987 36789999
Q ss_pred EEEecCCCEEEEEecCC
Q 003221 385 VTASVYGNNINIFRIMP 401 (838)
Q Consensus 385 ATAS~dGt~IrVwdi~p 401 (838)
+|||.||- |+|||+..
T Consensus 267 vTaSSDG~-I~vWd~~~ 282 (362)
T KOG0294|consen 267 VTASSDGF-IKVWDIDM 282 (362)
T ss_pred EEeccCce-EEEEEccc
Confidence 99999886 99999953
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.7e-09 Score=126.13 Aligned_cols=223 Identities=17% Similarity=0.225 Sum_probs=151.1
Q ss_pred EEEEEe-cCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCC
Q 003221 77 VLLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (838)
Q Consensus 77 vL~lG~-~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~ 155 (838)
.|++|. ++.+++|... .++...+|-+-.-|++.+++. +++.++|. ++|
T Consensus 68 ~f~~~s~~~tv~~y~fp-s~~~~~iL~Rftlp~r~~~v~-------------g~g~~iaa-gsd---------------- 116 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFP-SGEEDTILARFTLPIRDLAVS-------------GSGKMIAA-GSD---------------- 116 (933)
T ss_pred ceEEeeccceEEEeeCC-CCCccceeeeeeccceEEEEe-------------cCCcEEEe-ecC----------------
Confidence 455555 4569999995 466666787777788888876 34456654 211
Q ss_pred cccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEE-EeCCeEEEEECCCCceeeEEeecC
Q 003221 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAV-GLATQIYCFDALTLENKFSVLTYP 231 (838)
Q Consensus 156 ~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV-~l~~~I~IwD~~t~e~l~tL~t~p 231 (838)
+..|++-++.+......++ +..+|..|.++++ +||| ..+++|+|||+.++.+.+++..-+
T Consensus 117 ----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 117 ----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred ----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 3689999999888777775 5679999999986 7776 557899999999999888876421
Q ss_pred CcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccc
Q 003221 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (838)
Q Consensus 232 ~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~k 311 (838)
.- -++- ...+. .-+| |+ |-+|.+++
T Consensus 181 k~----n~~~-----~s~i~---~~~a--------W~-------------------Pk~g~la~---------------- 205 (933)
T KOG1274|consen 181 KD----NEFI-----LSRIC---TRLA--------WH-------------------PKGGTLAV---------------- 205 (933)
T ss_pred cc----cccc-----cccee---eeee--------ec-------------------CCCCeEEe----------------
Confidence 10 0000 00000 0111 11 11121111
Q ss_pred cccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEec
Q 003221 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 312 tls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a--H~spIsaLaFSPdGtlLATAS~ 389 (838)
...++.|++|+..+......++. |.+.++.++|||.|+|||+++.
T Consensus 206 ---------------------------------~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 206 ---------------------------------PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred ---------------------------------eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 13478899999998877766653 4555999999999999999999
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003221 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (838)
Q Consensus 390 dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw 458 (838)
+|. |-|||+.++ ..+++++ .|++++|-|++.-|-.-...|+.-+|
T Consensus 253 ~g~-I~vWnv~t~------------------~~~~~~~-----~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 253 DGQ-ILVWNVDTH------------------ERHEFKR-----AVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCc-EEEEecccc------------------hhccccc-----eeEEEecCCCCCeeEEEeeccccccC
Confidence 887 889999642 1123322 59999999999888777777765554
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=4.1e-11 Score=138.07 Aligned_cols=176 Identities=15% Similarity=0.206 Sum_probs=132.9
Q ss_pred CEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEEEeC-CeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV~l~-~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
.++.+|..-.-..+..|.. .++|.+|+|+.. +|+.|.. +.|++||+...+.+++|.+|-.+
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------------- 114 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------------- 114 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC---------------
Confidence 6777888766666666654 569999999875 6666554 48999999999888888776553
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.+. |+|.+. ..|.
T Consensus 115 ~~s-----v~f~P~---------------------------------------------------~~~~----------- 127 (825)
T KOG0267|consen 115 ITS-----VDFHPY---------------------------------------------------GEFF----------- 127 (825)
T ss_pred cce-----eeeccc---------------------------------------------------eEEe-----------
Confidence 111 111110 0000
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCC
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~ 408 (838)
+.++.++...+||.....+...+.+|..-+..|.|+|+|++++.+++ +..++|||...
T Consensus 128 --------------a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-d~tvki~d~~a------- 185 (825)
T KOG0267|consen 128 --------------ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-DNTVKIWDLTA------- 185 (825)
T ss_pred --------------ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC-cceeeeecccc-------
Confidence 12456888999999988899999999999999999999999999998 56799999843
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
| ..+.+|. + +.+.|+++-|.|-.-.|+.||.|+||++|+++++.
T Consensus 186 g----------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 186 G----------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred c----------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 4 3444553 2 23578999999999999999999999999998653
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=125.56 Aligned_cols=215 Identities=18% Similarity=0.171 Sum_probs=137.9
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC-eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccccccee
Q 003221 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~-iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~ 250 (838)
+.|+|||+.+.++..+++.+ +.|..|.++.. ++.||.+.+|+.|-+.- ..++++.+...- .| ...+
T Consensus 89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~g----Idh~ 156 (433)
T KOG0268|consen 89 GEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LG----IDHH 156 (433)
T ss_pred ceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------cc----cccc
Confidence 78999999999999999865 59999999764 78888899999998764 355665542220 00 0000
Q ss_pred EEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCcc
Q 003221 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (838)
Q Consensus 251 Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s 330 (838)
-...-.|..+..+.+|+.-+..|-. +.+ -| ..+.....
T Consensus 157 -~~~~~FaTcGe~i~IWD~~R~~Pv~------sms---------------------wG--------------~Dti~svk 194 (433)
T KOG0268|consen 157 -RKNSVFATCGEQIDIWDEQRDNPVS------SMS---------------------WG--------------ADSISSVK 194 (433)
T ss_pred -cccccccccCceeeecccccCCccc------eee---------------------cC--------------CCceeEEe
Confidence 0002234455667788853321110 000 00 00011223
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC
Q 003221 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (838)
Q Consensus 331 ~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~ 410 (838)
+|+..... + +.+..|+.|.|||+.....+..+.- +..-+.|+|+|.+--+++|++ ++++..||+.-. .
T Consensus 195 fNpvETsI-L--as~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l-----~-- 262 (433)
T KOG0268|consen 195 FNPVETSI-L--ASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL-----S-- 262 (433)
T ss_pred cCCCcchh-e--eeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh-----c--
Confidence 33322211 1 1456789999999998876654432 233468999998777777777 677999998531 0
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 411 ~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..+ ..++|+..| |.++.|||.|+-+++||-|.||+||.++...
T Consensus 263 ---------~p~-~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 263 ---------RPL-NVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ---------ccc-hhhccccee-EEEeccCCCcchhccccccceEEEeecCCCc
Confidence 112 223566555 9999999999999999999999999987643
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.7e-09 Score=122.90 Aligned_cols=309 Identities=16% Similarity=0.146 Sum_probs=174.7
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
+|++.|.-..-|- .+.-|+.|.++| ++||-+. +|.|...+.- |+.|++|+|.|.+ +.++
T Consensus 398 GHtg~Vr~iSvdp-------~G~wlasGsdDGtvriWEi~-TgRcvr~~~~-d~~I~~vaw~P~~-----------~~~v 457 (733)
T KOG0650|consen 398 GHTGLVRSISVDP-------SGEWLASGSDDGTVRIWEIA-TGRCVRTVQF-DSEIRSVAWNPLS-----------DLCV 457 (733)
T ss_pred ccCCeEEEEEecC-------CcceeeecCCCCcEEEEEee-cceEEEEEee-cceeEEEEecCCC-----------Ccee
Confidence 4555555444332 367899999988 9999995 5766666553 6789999999975 3567
Q ss_pred EEEEECCCCCcCCCCCCCC---CCCCc--ccCccCCCCCCCCCCCCEEEEEE------CCCCeEEEEEeCCCcEEEEEeC
Q 003221 133 LLVVAGEDTNTLAPGQNRS---HLGGV--RDGMMDSQSGNCVNSPTAVRFYS------FQSHCYEHVLRFRSSVCMVRCS 201 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~---~~~~~--~~gs~d~~~~~~~~~p~tV~IWD------l~tg~~V~tL~f~s~V~sV~~s 201 (838)
||+..++...-..+ .++ +.+.- .-+... +....+..|..|. +..| ...++++..+|..|.+.
T Consensus 458 LAvA~~~~~~ivnp--~~G~~~e~~~t~ell~~~~----~~~~p~~~~~~W~~~~~~e~~~~-v~~~I~~~k~i~~vtWH 530 (733)
T KOG0650|consen 458 LAVAVGECVLIVNP--IFGDRLEVGPTKELLASAP----NESEPDAAVVTWSRASLDELEKG-VCIVIKHPKSIRQVTWH 530 (733)
T ss_pred EEEEecCceEEeCc--cccchhhhcchhhhhhcCC----CccCCcccceeechhhhhhhccc-eEEEEecCCccceeeee
Confidence 77655432110000 001 00000 000000 0112335677783 3444 44567888899999998
Q ss_pred CC--eEEE----EeCCeEEEEECCCCcee--e-EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCC
Q 003221 202 PR--IVAV----GLATQIYCFDALTLENK--F-SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (838)
Q Consensus 202 ~~--iLaV----~l~~~I~IwD~~t~e~l--~-tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~v 272 (838)
++ +|++ +...+|.|+++...... + ...+.+.-. -+.+ ..+.++......+.+.+.-
T Consensus 531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v----~FHP---------s~p~lfVaTq~~vRiYdL~-- 595 (733)
T KOG0650|consen 531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRV----KFHP---------SKPYLFVATQRSVRIYDLS-- 595 (733)
T ss_pred cCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEE----EecC---------CCceEEEEeccceEEEehh--
Confidence 74 5554 44557999998753321 1 111221100 0000 0011222222223333210
Q ss_pred CCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEE
Q 003221 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (838)
Q Consensus 273 s~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~ 352 (838)
-.+..|.|..|+. . .+.++.++.+..+. -+++++.+.
T Consensus 596 -------------------------kqelvKkL~tg~k-----w---------iS~msihp~GDnli----~gs~d~k~~ 632 (733)
T KOG0650|consen 596 -------------------------KQELVKKLLTGSK-----W---------ISSMSIHPNGDNLI----LGSYDKKMC 632 (733)
T ss_pred -------------------------HHHHHHHHhcCCe-----e---------eeeeeecCCCCeEE----EecCCCeeE
Confidence 0112233333311 1 11112222121111 257889999
Q ss_pred EEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc--CCcceEEEEEeccc
Q 003221 353 VKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW--NSSHVHLYKLHRGI 429 (838)
Q Consensus 353 VwDl~s-~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~--~~~~~~l~~L~RG~ 429 (838)
.+|+.- .+...+++-|...|.+++|++.=-|+|+||.||+ +.||.-+-. .|+ ++-...+.+| ||+
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY----------~Dl~qnpliVPlK~L-~gH 700 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVY----------NDLLQNPLIVPLKRL-RGH 700 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeee----------hhhhcCCceEeeeec-cCc
Confidence 999974 4577899999999999999999999999999887 668864321 111 1112344444 454
Q ss_pred cc---ccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 430 TS---ATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 430 t~---a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
.. -.|.++.|+|.--||.+++.||||++|.
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 22 2488999999999999999999999983
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.1e-08 Score=117.99 Aligned_cols=248 Identities=13% Similarity=0.137 Sum_probs=166.7
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
+.+.+-|.+.|+ +.++++.+|..+.+.-||+.. .+-..-+..-.|++..+++.|..
T Consensus 67 ~~drsIE~L~W~----------e~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~~------------- 122 (691)
T KOG2048|consen 67 PEDRSIESLAWA----------EGGRLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPEN------------- 122 (691)
T ss_pred CCCCceeeEEEc----------cCCeEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCcc-------------
Confidence 445567888888 126899999999999999964 43434444556889999988741
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEeCCC--eE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR--IV 205 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f---~s~V~sV~~s~~--iL 205 (838)
..+++ ++|+ +.+.+.+...++......| .+.|+++.++++ .|
T Consensus 123 ~~l~I-gcdd--------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 123 TILAI-GCDD--------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred ceEEe-ecCC--------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 24554 4432 4466666666665544444 479999999997 46
Q ss_pred EEEeCCe-EEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCC
Q 003221 206 AVGLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (838)
Q Consensus 206 aV~l~~~-I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~ 284 (838)
+.|+.+. |+|||+.++..++.+.. .. +-++ -....++|.. +.|.
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~-----------------d~l~------k~~~~iVWSv-----~~Lr------ 214 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITM-QL-----------------DRLS------KREPTIVWSV-----LFLR------ 214 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeee-cc-----------------cccc------cCCceEEEEE-----EEee------
Confidence 7777655 99999999987773221 11 0010 0012233331 0000
Q ss_pred CCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003221 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (838)
Q Consensus 285 stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~ 364 (838)
++ .+ +.|+..|+|++||...++.+..
T Consensus 215 --------------------------------------d~--------------tI--~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 215 --------------------------------------DS--------------TI--ASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred --------------------------------------cC--------------cE--EEecCCceEEEEcccCcchhhh
Confidence 00 00 1367789999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003221 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (838)
Q Consensus 365 ~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (838)
+..|...|.||+.++++.++++|+.|+++|++... +. +. +-+...+|-.+...|.+++-.++
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~-~~------~~---------~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT-TN------KS---------EWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec-CC------cc---------ceeeeccccCCcccceeeeeecc--
Confidence 99999999999999999999999999997766554 21 10 11122233334457999999887
Q ss_pred EEEEEeCCCeEEEEecCC
Q 003221 445 WIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 445 ~Las~S~dGTVhIw~l~~ 462 (838)
.|.+|+.|.|+.|=....
T Consensus 303 ~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eEEecceeeEEEEccccc
Confidence 899999999988766544
No 132
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=3.1e-10 Score=120.74 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=83.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+++-|.+-.+||++++.++..+.+|.+.++.++-.|.-++++|+|. ++++|+||..+. ..-+.
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDFRea----------------I~sV~ 351 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDFREA----------------IQSVA 351 (481)
T ss_pred eeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccchhh----------------cceee
Confidence 3566888999999999999999999999999999999999999998 567999998642 12334
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.| .|++ ..|+++.|.-|.+ +++||+|.||+||+|...
T Consensus 352 VF-QGHt-dtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 352 VF-QGHT-DTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred ee-cccc-cceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence 44 4655 4699999998865 789999999999999654
No 133
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.14 E-value=2.4e-08 Score=109.66 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=67.0
Q ss_pred CceEEEEECCC--C--cEEEEeccC------CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 348 AGIVVVKDFVT--R--AIISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 348 ~G~V~VwDl~s--~--~~v~~~~aH------~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
+++|.+||+.. + +.+..+..+ ......+.|+|+|++|+++......|.||++... +.
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~------- 262 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED------GS------- 262 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC------CC-------
Confidence 57888888863 2 223333322 1123469999999999999776678999999542 10
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCC
Q 003221 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 465 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~-dGTVhIw~l~~~gg 465 (838)
....+.....| .....++|+|||++|+++.. +++|.||+++...+
T Consensus 263 ~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 263 VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 00112222222 13457899999999998876 88999999975443
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.14 E-value=1.9e-09 Score=114.12 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=81.7
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccCCCCCC-ccccCCcceEEEE
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNH-KYDWNSSHVHLYK 424 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~~G~~-~~~~~~~~~~l~~ 424 (838)
.+-.|++-|+.++..-.++.+|+..|.++.|+|... .|||||.||+ ||+|||... +|+- .-|.... +....
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgcf~~lD~hn~-k~~p~ 238 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGCFRVLDQHNT-KRPPI 238 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cceeEEeecccC-ccCcc
Confidence 345699999999999999999999999999999755 6889999887 999999642 1210 0000000 11111
Q ss_pred Ee-cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 425 LH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 425 L~-RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+. +-.+...|..+||+.|+++|++.+.|..+++|+.+.
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 21 333456799999999999999999999999999764
No 135
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.14 E-value=1.6e-09 Score=115.35 Aligned_cols=258 Identities=19% Similarity=0.302 Sum_probs=160.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCc--------------eeEEeeeccCcEEEEEEecC
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASN--------------FNELVSKRDGPVSFLQMQPF 116 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~---~g~--------------v~ells~hdg~V~~l~~lP~ 116 (838)
||....-+.|.. | +.++++|..+. |+|.|++- ... +.++|=.|-.+|++|.|-|.
T Consensus 111 HK~~cR~aafs~----D---G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 111 HKSPCRAAAFSP----D---GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred cccceeeeeeCC----C---CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 445556666654 3 78999999875 99999960 001 22233335567888887763
Q ss_pred CCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEE---EEEeCCC
Q 003221 117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRFRS 193 (838)
Q Consensus 117 p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V---~tL~f~s 193 (838)
..+|+. + +- +++|+++|+.+-... +.+.--.
T Consensus 184 -------------e~ILiS--~---------------------sr----------D~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 184 -------------ETILIS--G---------------------SR----------DNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred -------------hheEEe--c---------------------cC----------CCeEEEEecccHHHHHHHHHhhccc
Confidence 124432 1 11 389999999654332 2333346
Q ss_pred cEEEEEeCC--CeEEEEeCC-eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCC
Q 003221 194 SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG 270 (838)
Q Consensus 194 ~V~sV~~s~--~iLaV~l~~-~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G 270 (838)
+|.++.|.| ++|+++.+. .+++||+.|.++... ..|..+ .. + ++ .-+-|++.
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs--anPd~q-----ht------~--ai--~~V~Ys~t-------- 272 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS--ANPDDQ-----HT------G--AI--TQVRYSST-------- 272 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeee--cCcccc-----cc------c--ce--eEEEecCC--------
Confidence 899999987 588888875 689999999887532 222211 00 0 11 11223221
Q ss_pred CCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCce
Q 003221 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (838)
Q Consensus 271 ~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~ 350 (838)
+++ | .+++.||.
T Consensus 273 --------------------~~l----------------------Y--------------------------vTaSkDG~ 284 (430)
T KOG0640|consen 273 --------------------GSL----------------------Y--------------------------VTASKDGA 284 (430)
T ss_pred --------------------ccE----------------------E--------------------------EEeccCCc
Confidence 000 0 14678999
Q ss_pred EEEEECCCCcEEEEec-cCCC-CeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc---CCC---CC------------
Q 003221 351 VVVKDFVTRAIISQFK-AHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR---SGS---GN------------ 410 (838)
Q Consensus 351 V~VwDl~s~~~v~~~~-aH~s-pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~---~~~---G~------------ 410 (838)
|+|||-.+++++.+|. ||.+ .|.+..|..+|+++.+.+.| .++++|.+.+...- .|. |.
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D-S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht 363 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD-STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT 363 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc-ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence 9999999999999885 7875 68899999999999999985 56999999653200 011 11
Q ss_pred ------------CccccCCc-ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 411 ------------HKYDWNSS-HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 411 ------------~~~~~~~~-~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.-..|.+. ...+..+.-|++ ..+..|.-||.+--++++|+|-.++.|--
T Consensus 364 EdyVl~pDEas~slcsWdaRtadr~~l~slgHn-~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 364 EDYVLFPDEASNSLCSWDARTADRVALLSLGHN-GAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cceEEccccccCceeeccccchhhhhhcccCCC-CCceEEEeCCCCCceeeecccceeeeeee
Confidence 00112221 011122223543 34777888888888888888888888863
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.3e-09 Score=117.06 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=84.7
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccC-----Cc
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN-----SS 418 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~-----~~ 418 (838)
+.+.|.++++||+..+.++.++.- ..+|.+++.+|-++.+..|+.+|. |-+.++.... |. +.+.. ..
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~-----~~-~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLS-----GQ-SAGVNQKGRHEE 264 (476)
T ss_pred EecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeeehhcCC-----cc-cccccccccccc
Confidence 467899999999999988777653 578999999999999999999886 7777764311 10 00000 01
Q ss_pred ceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 419 HVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 419 ~~~l~~L~RG~t~-a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
......| .|+++ ..|+|++.|-||..|++|+.||+|.||++........+
T Consensus 265 ~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 265 NTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 1222333 35444 47999999999999999999999999999775544333
No 137
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.13 E-value=1.4e-09 Score=118.44 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=91.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+++.|.+|++||+.+++.+..+.. ..+++++..+|...+||+||.| ..||+||-... +|. ...+
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd-r~irl~DPR~~-----~gs---------~v~~ 339 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD-RHIRLWDPRTG-----DGS---------VVSQ 339 (423)
T ss_pred eecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC-CceeecCCCCC-----CCc---------eeEE
Confidence 357899999999999998888876 4689999999999999999995 55999997542 231 2233
Q ss_pred EEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCCC-CccccccCCCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG-GDSGFQTLSSQG 476 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~-~Las~S~dGTVhIw~l~~~g-g~~~~~~H~~~~ 476 (838)
.| -|+++ .|.++.|+|... .|+++|.|+|+++||+.... ....+.+|+.++
T Consensus 340 s~-~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 340 SL-IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ee-ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 44 46554 799999999766 47889999999999998877 456788887544
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.12 E-value=3.9e-08 Score=110.29 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=94.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
++.+|+.|++|+ ..+++.+.. -..|..|+.|+|.| .||.+...|+ --|.|++. +.+.
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~------------------~~lv 441 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR-WFVLDTET------------------QDLV 441 (626)
T ss_pred eccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce-EEEEeccc------------------ceeE
Confidence 567899999999 444433222 24789999999999 8999999887 55888854 3445
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc-ccCCCCCCCCcccCccCCCcccCCCCccccc
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLSSQGGDPYLFPVLSLPWWCTSSGISEQQ 500 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~-~~H~~~~~~~~~~p~~~lp~~~~s~~~~~q~ 500 (838)
.++.- ++.|..++|||||.+||++|.|+.|.||.++..|-.... .-|. -+|++.|-|...+.+...|.
T Consensus 442 ~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~-------gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 442 TIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS-------GSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec-------CceeEEeeecCCCceEEecc
Confidence 55432 568999999999999999999999999999987755432 2221 27888898888888776664
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.4e-08 Score=108.44 Aligned_cols=247 Identities=17% Similarity=0.133 Sum_probs=158.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
..+|.|.-++|+. . .+.|+++..+| +++||++.. .+ .+.=.|++|+-..+|-+. .
T Consensus 11 pP~d~IS~v~f~~----~---~~~LLvssWDgslrlYdv~~~-~l-~~~~~~~~plL~c~F~d~---------------~ 66 (323)
T KOG1036|consen 11 PPEDGISSVKFSP----S---SSDLLVSSWDGSLRLYDVPAN-SL-KLKFKHGAPLLDCAFADE---------------S 66 (323)
T ss_pred CChhceeeEEEcC----c---CCcEEEEeccCcEEEEeccch-hh-hhheecCCceeeeeccCC---------------c
Confidence 3578999999973 1 23455555555 999999653 22 233357788888887642 1
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCC--C-eEEEEe
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--R-IVAVGL 209 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~--~-iLaV~l 209 (838)
-++ .|+ .++.|+.+|+.+++......+...|.+|.... + +|+.+.
T Consensus 67 ~~~-~G~-------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsW 114 (323)
T KOG1036|consen 67 TIV-TGG-------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSW 114 (323)
T ss_pred eEE-Eec-------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEccc
Confidence 122 221 23789999999999877778888999999884 3 666778
Q ss_pred CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps 289 (838)
++.|++||.++-....++.. +.+ ...|.++
T Consensus 115 D~~ik~wD~R~~~~~~~~d~-~kk-------------Vy~~~v~------------------------------------ 144 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQ-GKK-------------VYCMDVS------------------------------------ 144 (323)
T ss_pred CccEEEEecccccccccccc-Cce-------------EEEEecc------------------------------------
Confidence 99999999987222221111 000 1112111
Q ss_pred CCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc--
Q 003221 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-- 367 (838)
Q Consensus 290 ~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a-- 367 (838)
+..++ .|..+..|.+||+.+.....+.+.
T Consensus 145 g~~Lv-------------------------------------------------Vg~~~r~v~iyDLRn~~~~~q~reS~ 175 (323)
T KOG1036|consen 145 GNRLV-------------------------------------------------VGTSDRKVLIYDLRNLDEPFQRRESS 175 (323)
T ss_pred CCEEE-------------------------------------------------EeecCceEEEEEcccccchhhhcccc
Confidence 00111 123466799999998765444433
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec----cccc-ccEEEEEEccC
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR----GITS-ATIQDICFSHY 442 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R----G~t~-a~I~sIaFSpD 442 (838)
-.-.+.|+++-|++.=.|.+|.+|+ +-|=.+.+.. -.+...-.++.+| |..- -+|.+|+|+|-
T Consensus 176 lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~-----------~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 176 LKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSE-----------EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ceeEEEEEEEecCCCceEEEeecce-EEEEccCCch-----------HHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 3457899999999888999999998 4454343210 0011122233333 2111 26899999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCcc
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg~~ 467 (838)
-+.||+|+.||-|-+|++.+.+-..
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhh
Confidence 9999999999999999998776433
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.5e-08 Score=112.68 Aligned_cols=95 Identities=18% Similarity=0.334 Sum_probs=72.5
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.|.|.-..+++.+..|+- .+.|+.++|+.||+.|...+.+|. |.|||+... .+++++.
T Consensus 323 ~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~-----------------~~~~rf~ 383 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN-----------------SCLHRFV 383 (514)
T ss_pred cCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc-----------------ceEEEEe
Confidence 456777777777777777764 467899999999999998888885 999999542 3444443
Q ss_pred -cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 427 -RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 427 -RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.|.. .=+++|-|++++|||+||+.|.|.||+.+.
T Consensus 384 D~G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 384 DDGSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ecCcc--ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 1211 136788899999999999999999999765
No 141
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=9.4e-08 Score=104.98 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=70.4
Q ss_pred CCceEEEEECCCCcEEE-------EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 347 NAGIVVVKDFVTRAIIS-------QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~-------~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
.++.|.|||+.+...+. .+... .....++|+|||++|+++...+..|.+|++.+. .| ..
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-----~~--------~~ 211 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-----HG--------EI 211 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-----CC--------CE
Confidence 46789999997643221 22222 234679999999999999886777999999631 01 11
Q ss_pred eEEEEEecc---c-ccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCCccc
Q 003221 420 VHLYKLHRG---I-TSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 420 ~~l~~L~RG---~-t~a~I~sIaFSpDg~~Las~S~-dGTVhIw~l~~~gg~~~ 468 (838)
..+.++... . .......|.|+||+++|.++.. +++|.||+++..++...
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 233333210 0 0112346899999999999854 68999999987654433
No 142
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.08 E-value=7.1e-09 Score=115.15 Aligned_cols=175 Identities=13% Similarity=0.149 Sum_probs=129.0
Q ss_pred CEEEEEECCCCeEEEEEe-CCCcEEEEEeCC---CeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~---~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
+.|.|||.++.+.++.++ +++.|.+++|.. ++.+.+.+..|++|++..+..+.++..|+.-
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--------------- 288 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG--------------- 288 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc---------------
Confidence 789999999999999976 467999999965 3777788889999999988877777776552
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.++++. | +.++
T Consensus 289 v~~Ida--L----------~reR--------------------------------------------------------- 299 (479)
T KOG0299|consen 289 VLGIDA--L----------SRER--------------------------------------------------------- 299 (479)
T ss_pred eeeech--h----------cccc---------------------------------------------------------
Confidence 122210 0 0000
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCC
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~ 408 (838)
... .+..|.+++||++.. ...-.|++|.+.|-|++|=.+ ..++|+|.+|. |-+|++..-
T Consensus 300 --------~vt----VGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KK------ 358 (479)
T KOG0299|consen 300 --------CVT----VGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKK------ 358 (479)
T ss_pred --------eEE----eccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeeccc------
Confidence 000 245689999999954 445688999999999999765 68999999886 999998531
Q ss_pred CCCccccCCcceEEEE--Eecccc--------cccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 409 GNHKYDWNSSHVHLYK--LHRGIT--------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~--L~RG~t--------~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..++. +-.|.- +..|++|+-.|.+..+|+||.+|.|++|.+++.
T Consensus 359 -----------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 -----------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred -----------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 12222 111211 127999999999999999999999999999864
No 143
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.08 E-value=5.7e-10 Score=133.82 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=99.4
Q ss_pred CCceEEEEECCC------------CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccc
Q 003221 347 NAGIVVVKDFVT------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 347 ~~G~V~VwDl~s------------~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~ 414 (838)
.||.++||.... .+.+.+..-|.+.|+|+.|+|||++||+||+| ..|-||+-.+......-|.+...
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-~~v~iW~~~~~~~~~~fgs~g~~ 113 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-RLVMIWERAEIGSGTVFGSTGGA 113 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-ceEEEeeecccCCcccccccccc
Confidence 577777998753 24567888999999999999999999999995 56999998641000000100000
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccCc
Q 003221 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 484 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~ 484 (838)
-.-+.+..+...||+ ...|.+++||||+.+||++|.|++|+||+..+++....+++|.+.|.+..+-|.
T Consensus 114 ~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 114 KNVESWKVVSILRGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred cccceeeEEEEEecC-CCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCc
Confidence 011112333344674 568999999999999999999999999999999888889999888887655553
No 144
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2e-08 Score=115.08 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=57.0
Q ss_pred EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003221 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
..++|+|||++||.++. +. |.+||+.. | .. ..+..+. ...+++|+|||++|+.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~-------g----------~~-~~lt~~~---~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 336 YSAQISADGKTLVMING-DN-VVKQDLTS-------G----------ST-EVLSSTF---LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CCccCCCCCCEEEEEcC-CC-EEEEECCC-------C----------Ce-EEecCCC---CCCCceECCCCCEEEEEEcC
Confidence 45789999999998887 34 55688853 3 11 1222221 23568899999999999999
Q ss_pred CeEEEEecCCC-C-CccccccCCCCCCCCcccC
Q 003221 453 GTCHVFVLSPF-G-GDSGFQTLSSQGGDPYLFP 483 (838)
Q Consensus 453 GTVhIw~l~~~-g-g~~~~~~H~~~~~~~~~~p 483 (838)
|++.+|.+... | ....+..|...+..+.++|
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 99998887443 3 2344555544333333333
No 145
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=1.7e-08 Score=107.73 Aligned_cols=272 Identities=16% Similarity=0.152 Sum_probs=169.6
Q ss_pred ccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCC
Q 003221 43 SVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDD 121 (838)
Q Consensus 43 s~a~~i~~~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~ 121 (838)
+|+..+....+++||.|--+.-|. .+.++..+.. .+-+||.++ .+.|.-.+.+|-|.|++++|.|.
T Consensus 135 t~~~~lvre~~GHkDGiW~Vaa~~-------tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s----- 201 (481)
T KOG0300|consen 135 TVKFRLVRELEGHKDGIWHVAADS-------TQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHNS----- 201 (481)
T ss_pred ceeEeehhhhcccccceeeehhhc-------CCcceeecccccceeEEeec-cccceeeecccccceeeEEeccc-----
Confidence 456666667899999986665544 1235555544 569999996 58898899999999999998863
Q ss_pred CCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCC---C-------CCCCEEEEEEC--C-----CCe
Q 003221 122 GCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNC---V-------NSPTAVRFYSF--Q-----SHC 184 (838)
Q Consensus 122 ~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~---~-------~~p~tV~IWDl--~-----tg~ 184 (838)
+.|++..+||++....- ....|+.+..++ + -++...+.-|- + -..
T Consensus 202 --------~~L~lTaSGD~taHIW~----------~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 202 --------GLLLLTASGDETAHIWK----------AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred --------cceEEEccCCcchHHHH----------HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 34777766666531110 000111100000 0 00111111110 0 011
Q ss_pred EEEEEe-CCCcEEEEEeC--C-CeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEe
Q 003221 185 YEHVLR-FRSSVCMVRCS--P-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA 260 (838)
Q Consensus 185 ~V~tL~-f~s~V~sV~~s--~-~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys 260 (838)
.+..|. +.+.|.+..+- . +++..+-+..-.+||+.+++.++.|.+|... ...++
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-------------LtHcs--------- 321 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-------------LTHCS--------- 321 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-------------ccccc---------
Confidence 233343 33455555442 2 3555666778899999999988777665432 11110
Q ss_pred CCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccc
Q 003221 261 SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 340 (838)
Q Consensus 261 ~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~ 340 (838)
+.| ...+|.
T Consensus 322 -------------------------tHp-tQrLVv--------------------------------------------- 330 (481)
T KOG0300|consen 322 -------------------------THP-TQRLVV--------------------------------------------- 330 (481)
T ss_pred -------------------------cCC-cceEEE---------------------------------------------
Confidence 000 011111
Q ss_pred cccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 341 AGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 341 ~~~~g~~~G~V~VwDl~s-~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
+.+.|-+.++||+.. -..+..|++|+..|++..|.-|. .++++|. +.+|+|||+..- .
T Consensus 331 ---TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM-------------R--- 389 (481)
T KOG0300|consen 331 ---TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM-------------R--- 389 (481)
T ss_pred ---EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc-------------c---
Confidence 234577899999974 34688999999999999999875 5778887 566999999531 0
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+.+.+ +...+.-|+.|.-+..||.--++..|+|||++-
T Consensus 390 splATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 390 SPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred Ccceeee---cCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 2455554 344688899999888999999999999999974
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.06 E-value=6.2e-09 Score=119.94 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=90.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---CCEEEEEecCCCEEEEEecCCCcccC--CCCC----Ccc-
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRS--GSGN----HKY- 413 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~--~~G~----~~~- 413 (838)
.|+.-|+++|||+.+.+....+.||.+.|.||.||-- -+|||+||. |+.|+|||+..++..- ..|- ++.
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr-dRlIHV~Dv~rny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR-DRLIHVYDVKRNYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC-CceEEEEecccccchhhhhcccccceeEEE
Confidence 4678899999999999999999999999999999973 679999998 7899999997654210 0000 000
Q ss_pred ----c-------cCCcceEE----------EEEecccc---cccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 414 ----D-------WNSSHVHL----------YKLHRGIT---SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 414 ----~-------~~~~~~~l----------~~L~RG~t---~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
+ ..+....+ ..|.|+++ ...+++++.-|..++++++..|..|+||+++..+....+
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF 634 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence 0 00000000 11223322 125999999999999999999999999999987766555
Q ss_pred c
Q 003221 470 Q 470 (838)
Q Consensus 470 ~ 470 (838)
+
T Consensus 635 K 635 (1080)
T KOG1408|consen 635 K 635 (1080)
T ss_pred c
Confidence 3
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.05 E-value=1.1e-08 Score=109.76 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=84.4
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLa 134 (838)
++|+..+..=-.++..+ ...-+.+.|+.+-|+|.|+. .+.+..-+.+|.+.|+.|++.|. +|.|+
T Consensus 87 d~~Esfytcsw~yd~~~-~~p~la~~G~~GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~-------------~~qlv 151 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNT-GNPFLAAGGYLGVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPD-------------RPQLV 151 (385)
T ss_pred CCCcceEEEEEEecCCC-CCeeEEeecceeEEEEEecc-hhhhccceeccCccchhhhcCCC-------------CCcEE
Confidence 45554444332233322 12344555555558999995 57787888889999999998874 45554
Q ss_pred EEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEeCCC--eEE-E
Q 003221 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR--IVA-V 207 (838)
Q Consensus 135 vV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~----f~s~V~sV~~s~~--iLa-V 207 (838)
+ ++ +.+..||+||.++..++..+. ++..|++|.++.+ +++ .
T Consensus 152 l-s~-------------------------------SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 152 L-SA-------------------------------SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred E-Ee-------------------------------cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc
Confidence 4 22 124789999999999999984 6789999999875 555 4
Q ss_pred EeCCeEEEEECCCCc
Q 003221 208 GLATQIYCFDALTLE 222 (838)
Q Consensus 208 ~l~~~I~IwD~~t~e 222 (838)
|.+.+|++|++...+
T Consensus 200 GmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKE 214 (385)
T ss_pred CCcceEEEEecChhH
Confidence 668899999998543
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.05 E-value=2.5e-08 Score=115.21 Aligned_cols=100 Identities=13% Similarity=0.291 Sum_probs=79.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
-..|+||+..+-..+..|..|.-.|+.|+|||||++|+++|. +++..+|..+... .+ ..-+....
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~----~~----------e~~fa~~k 615 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDI----KD----------EFRFACLK 615 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEeeeeeccc----ch----------hhhhcccc
Confidence 346999999988878899999999999999999999999999 5669999985420 00 01112112
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
- |...|+++.|+||++++|++|.|.+|+||.+...
T Consensus 616 ~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 616 A-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred c-cceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 2 3347999999999999999999999999998653
No 149
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.05 E-value=2.2e-10 Score=126.88 Aligned_cols=208 Identities=16% Similarity=0.214 Sum_probs=132.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe--CCCeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccccccee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~--s~~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~ 250 (838)
+.|-.+|.++++..+++.....|.+|.| +.+++||+...-+||||-. |..+++|..+.. ...+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~--------------v~rL 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIR--------------VARL 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCc--------------hhhh
Confidence 5688899999999999999999999999 4569999999999999955 556788775422 1112
Q ss_pred EEcc-c-EEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 251 AVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 251 Alsp-r-~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.+=| . +||.++.. |-..-|.+ +.|.+|+.+ ..| .|....
T Consensus 216 eFLPyHfLL~~~~~~------G~L~Y~DV-----------S~GklVa~~--------~t~--------------~G~~~v 256 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEA------GFLKYQDV-----------STGKLVASI--------RTG--------------AGRTDV 256 (545)
T ss_pred cccchhheeeecccC------CceEEEee-----------chhhhhHHH--------Hcc--------------CCccch
Confidence 1111 1 12222211 11100100 112222211 111 011111
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCC
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~ 408 (838)
...|+-..+. ..|...|+|.+|.-.+.+.+..+..|.+||++|+++++|+|+||++. ++.++|||+...
T Consensus 257 m~qNP~NaVi----h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~------ 325 (545)
T KOG1272|consen 257 MKQNPYNAVI----HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF------ 325 (545)
T ss_pred hhcCCccceE----EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc------
Confidence 1112211111 14678999999999999999999999999999999999999999999 566999999531
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.++..++ ++-....++||.-|. || .|.-..|+||.=.
T Consensus 326 -----------~ql~t~~---tp~~a~~ls~Sqkgl-LA-~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 326 -----------YQLHTYR---TPHPASNLSLSQKGL-LA-LSYGDHVQIWKDA 362 (545)
T ss_pred -----------cccceee---cCCCccccccccccc-ee-eecCCeeeeehhh
Confidence 2444443 233467799997663 33 3444469999743
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.01 E-value=2.8e-09 Score=118.91 Aligned_cols=94 Identities=20% Similarity=0.325 Sum_probs=77.2
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
-.||.|.|||+.+..++.+|++|+.-++||.+++||+.|=|++-|. ++|.||+.. | +++.+
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlre-------g----------rqlqq- 588 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLRE-------G----------RQLQQ- 588 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhh-------h----------hhhhh-
Confidence 3589999999999999999999999999999999999999999965 599999964 3 22222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
..-...|.++..+|.+.|||+|=.++.|.|-..
T Consensus 589 --hdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 589 --HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred --hhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 111236999999999999999999986655443
No 151
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.7e-08 Score=112.29 Aligned_cols=220 Identities=14% Similarity=0.194 Sum_probs=138.8
Q ss_pred CCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 73 VFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 73 ~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
..+..|+.|.-. .+-+|.+ .+|++..+++.|=-+|.+++|.-+. + ++. +++
T Consensus 91 n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dg-----------s--~ii--Tgs------------ 142 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDG-----------S--HII--TGS------------ 142 (476)
T ss_pred CCceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCC-----------c--EEE--ecC------------
Confidence 457888888555 4999999 5688888899999999999988442 2 332 221
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEECC-------C--CeEEEEEeCCC-cEEEEEeC-----CCeEEEEeCCeEEEE
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------S--HCYEHVLRFRS-SVCMVRCS-----PRIVAVGLATQIYCF 216 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~-------t--g~~V~tL~f~s-~V~sV~~s-----~~iLaV~l~~~I~Iw 216 (838)
.++.|.+|++. + -++.+.+..+. +|.++.+. ++++.++.|..|+||
T Consensus 143 -------------------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 143 -------------------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW 203 (476)
T ss_pred -------------------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence 12567788652 1 23344443333 77777764 457778888899999
Q ss_pred ECCCCceeeEEeecCCcccCCCCccccccccceeEEcc-cEEEEeCCC-ceeecCCCCCCcccCCCCCCCCCCCCCCcce
Q 003221 217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 294 (838)
Q Consensus 217 D~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp-r~LAys~~~-~~l~~~G~vs~q~l~~~~~s~stsps~gslv 294 (838)
|+..+..+.++.. |.+ ...+++.| ....|.+.. ..+|- -.
T Consensus 204 dlS~g~LLlti~f-p~s-------------i~av~lDpae~~~yiGt~~G~I~~------~~------------------ 245 (476)
T KOG0646|consen 204 DLSLGVLLLTITF-PSS-------------IKAVALDPAERVVYIGTEEGKIFQ------NL------------------ 245 (476)
T ss_pred EeccceeeEEEec-CCc-------------ceeEEEcccccEEEecCCcceEEe------ee------------------
Confidence 9999988887654 221 45677776 334454421 00000 00
Q ss_pred eeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC--Ce
Q 003221 295 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PI 372 (838)
Q Consensus 295 a~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~s--pI 372 (838)
+.. ++ + ...+=.++.++.. +..+..|.+|.. +|
T Consensus 246 ---------------------~~~--~~-------------------~--~~~~v~~k~~~~~-~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 246 ---------------------LFK--LS-------------------G--QSAGVNQKGRHEE-NTQINVLVGHENESAI 280 (476)
T ss_pred ---------------------hhc--CC-------------------c--ccccccccccccc-cceeeeeccccCCcce
Confidence 000 00 0 0000013333332 455778889998 99
Q ss_pred EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003221 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 442 (838)
+||+++-||++|++|+.||+ +.|||+.. .+++..+.. ...+|+.+.|.|-
T Consensus 281 TcLais~DgtlLlSGd~dg~-VcvWdi~S-----------------~Q~iRtl~~--~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGK-VCVWDIYS-----------------KQCIRTLQT--SKGPVTNLQINPL 330 (476)
T ss_pred eEEEEecCccEEEeeCCCCC-EEEEecch-----------------HHHHHHHhh--hccccceeEeecc
Confidence 99999999999999999887 89999943 245554431 1236787887664
No 152
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=6.6e-10 Score=127.55 Aligned_cols=315 Identities=24% Similarity=0.315 Sum_probs=186.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+-++++||=.| .++|-....+.+.+.+.++.|+|+.+.++++- ++.+ -
T Consensus 252 Gy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~--------------~viv-k---------------- 300 (788)
T KOG2109|consen 252 GYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN--------------LVIV-K---------------- 300 (788)
T ss_pred hHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc--------------eEEe-e----------------
Confidence 56788888777 89999888888889999999999999988642 2222 1
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEeCCeEEEEECCCCceeeEEee-cCC
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YPV 232 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l~~~I~IwD~~t~e~l~tL~t-~p~ 232 (838)
.|=++.+...++..+++..+++++-+.-+|++++-..+-|++++.++..-++.. ++.
T Consensus 301 ----------------------df~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs 358 (788)
T KOG2109|consen 301 ----------------------DFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQS 358 (788)
T ss_pred ----------------------cccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccc
Confidence 122333444556666666666666667778888877777777777776555432 222
Q ss_pred cccCCCCccccccccceeEEcccEEEEeCC-CceeecC-CCCC--CcccCC-CCC----CCCCC---CCCCcceeeeehh
Q 003221 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASN-TLLLSNS-GRLS--PQNLTP-SGV----SPSTS---PGGSSLVARYAME 300 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alspr~LAys~~-~~~l~~~-G~vs--~q~l~~-~~~----s~sts---ps~gslva~~A~d 300 (838)
+. ..+.++.++||+|.-- ...-|.. |... +-.|.+ ... .++.. .+.+-++
T Consensus 359 ~~------------~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge~P~ls~t~~lp~~A~~Sl~~gl~s~g~~a------ 420 (788)
T KOG2109|consen 359 LV------------VSPRANTAAVIQDICFSEVSTIRTAGSCEGEPPALSLTCQLPAYADTSLDLGLQSSGGLA------ 420 (788)
T ss_pred cc------------cchhcchHHHHHHHhhhhhcceEeecccCCCCcccccccccchhhchhhhccccccCccc------
Confidence 11 2244555544443210 0000111 1000 001110 000 00000 0011111
Q ss_pred hhhhhhccccccccccccccCCCCCCCCccCCCccccccc-cc-cccCCCceEEEEECC-----CC-cEEEEeccCCCCe
Q 003221 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH-AG-ADMDNAGIVVVKDFV-----TR-AIISQFKAHTSPI 372 (838)
Q Consensus 301 s~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~-~~-~~g~~~G~V~VwDl~-----s~-~~v~~~~aH~spI 372 (838)
+.|+.-+-.+|+...+..++....+--++.+..+. .+ ..-...|.+.+.+.. ++ .+++++-+|..++
T Consensus 421 -----a~gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k~~q~~~~~l~~llv~~psGd~vvqh~vahs~~g 495 (788)
T KOG2109|consen 421 -----AEGLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTKANQGVITVLNLLLVGEPSGDGVVQHYVAHSDPG 495 (788)
T ss_pred -----ceeeeeccccccccccccceeeccccccchhhccceeeeccccCccchhhhhheeeecCCCCceeEEEeeccCcc
Confidence 11111111233333321111100000011111110 00 011122344443331 23 5778889999999
Q ss_pred EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003221 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
..+.|+|+++++.||+..++.+.+|.++|+...+ .-....|+|++.||.|.++|..++|+-|++|+|.....
T Consensus 496 v~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~ws--------slaav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~ 567 (788)
T KOG2109|consen 496 VYIEFSPDQRLVLSADANENEFNIFLVMPHATWS--------SLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNH 567 (788)
T ss_pred ceeeecccccceecccccccccceEEeecccccH--------HHhhhhhhhhccCCCccceeeeeEeecchhhhhhhhcC
Confidence 9999999999999999999988999999874221 11234789999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCccccccCC
Q 003221 453 GTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 453 GTVhIw~l~~~gg~~~~~~H~ 473 (838)
+|-|||.+.+|++....+.|.
T Consensus 568 ~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 568 ATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred CceeeeeeccccccccceecC
Confidence 999999999999999999885
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.98 E-value=1.3e-08 Score=113.10 Aligned_cols=239 Identities=15% Similarity=0.129 Sum_probs=143.4
Q ss_pred CCCCCeEEEEEecCc-EEEEEcc---CCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCC
Q 003221 71 PSVFKQVLLLGYQNG-FQVLDVE---DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP 146 (838)
Q Consensus 71 ~~~~~~vL~lG~~~G-~qVWdv~---~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~ 146 (838)
+.+.++++++|...| |-+||+. ....-.-++-.|.++|..|.|.|.- .+ .+...+
T Consensus 196 Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n----------~s--~i~ssS--------- 254 (498)
T KOG4328|consen 196 PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN----------TS--QIYSSS--------- 254 (498)
T ss_pred ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC----------hh--heeeec---------
Confidence 334578999999887 9999994 2222234567789999999999852 12 222211
Q ss_pred CCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE--EEEEeCC-CcEEEEEeCCC---eEEEEeCCeEEEEECCC
Q 003221 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY--EHVLRFR-SSVCMVRCSPR---IVAVGLATQIYCFDALT 220 (838)
Q Consensus 147 ~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~--V~tL~f~-s~V~sV~~s~~---iLaV~l~~~I~IwD~~t 220 (838)
+++++|+=|+.++.. +..++-. ....++.++.. +|++..-+...+||+++
T Consensus 255 ------------------------yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 255 ------------------------YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred ------------------------cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 247899999987643 3333212 24456666532 45554445778999888
Q ss_pred Cceee-EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeeh
Q 003221 221 LENKF-SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (838)
Q Consensus 221 ~e~l~-tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ 299 (838)
....+ .++-|..+ .+.+++.|. .++
T Consensus 311 ~~s~~~~~~lh~kK-------------I~sv~~NP~-----------------~p~------------------------ 336 (498)
T KOG4328|consen 311 DGSEYENLRLHKKK-------------ITSVALNPV-----------------CPW------------------------ 336 (498)
T ss_pred CCccchhhhhhhcc-------------cceeecCCC-----------------Cch------------------------
Confidence 65422 22222221 223333220 000
Q ss_pred hhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCCCeEEE
Q 003221 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISAL 375 (838)
Q Consensus 300 ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~----v~~~~aH~spIsaL 375 (838)
.+ ++++.|++++|||+..... +-....|+.+|++.
T Consensus 337 -------------------------------------~l----aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sA 375 (498)
T KOG4328|consen 337 -------------------------------------FL----ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSA 375 (498)
T ss_pred -------------------------------------he----eecccCcceeeeehhhhcCCCCcceecccccceeeee
Confidence 00 1356789999999986432 33445799999999
Q ss_pred EECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE
Q 003221 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC 455 (838)
Q Consensus 376 aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTV 455 (838)
.|||+|-.|+|.+.|.+ |||||..- .++..- ......|-...-|-. .+.--+|.||..+|+++-.-.-|
T Consensus 376 yFSPs~gtl~TT~~D~~-IRv~dss~--~sa~~~-----p~~~I~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 376 YFSPSGGTLLTTCQDNE-IRVFDSSC--ISAKDE-----PLGTIPHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred EEcCCCCceEeeccCCc-eEEeeccc--ccccCC-----ccceeeccCcccccc---cchhheeCCCccEEEEeccCcce
Confidence 99999777999999655 99999731 000000 000001111111111 24456899999999999999989
Q ss_pred EEEec
Q 003221 456 HVFVL 460 (838)
Q Consensus 456 hIw~l 460 (838)
-||+-
T Consensus 445 Dv~~~ 449 (498)
T KOG4328|consen 445 DVFDG 449 (498)
T ss_pred eEEcC
Confidence 99874
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.98 E-value=1.7e-08 Score=108.48 Aligned_cols=100 Identities=19% Similarity=0.319 Sum_probs=85.4
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
..-|.|+|.|+.+++....+.+|...|+.|.|.|+ -+||++||. ++.||+|+|+.. .++..
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~V 173 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVAV 173 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEEE
Confidence 36789999999999999999999999999999997 478999998 677999999752 45555
Q ss_pred Ee--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 425 LH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 425 L~--RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
|- .| |+..|.++.|++||.+||+++.|.++++|+|+...
T Consensus 174 fGG~eg-HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 174 FGGVEG-HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred eccccc-ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 52 23 44579999999999999999999999999998543
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.97 E-value=1.1e-08 Score=113.65 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=78.2
Q ss_pred CCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 346 DNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~-~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
++=|...+||+..++ ....++-|...|..|+|+|- -.+|||||.|++ .+|||+..- .+..+ -.|+
T Consensus 298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K~s-------p~ls 364 (498)
T KOG4328|consen 298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGKAS-------PFLS 364 (498)
T ss_pred ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCCCC-------ccee
Confidence 345688999998765 47788899999999999995 678999999776 899999642 12110 1344
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+. |...|.+..|||++-.|++.+.|.+|+||+..
T Consensus 365 t~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 442 34469999999999889999999999999985
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.6e-09 Score=119.43 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=77.7
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
+...|+|||+....++..+..-...|+.|+.+|.|.-|+.++.++. +.+||+.-. ...|+-.
T Consensus 585 Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldls-----------------skPyk~l 646 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLS-----------------SKPYKTL 646 (733)
T ss_pred eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccC-----------------cchhHHh
Confidence 4567999999988888888877889999999999999999999765 789998531 1233333
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
|-+ ...|.+++|++-=-.+|++|+|||++||.-.-+
T Consensus 647 r~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 647 RLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred hhh-hhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 433 345999999998889999999999999964433
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=1.6e-08 Score=112.02 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=99.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
...|+|-|+...++++ .++||+.|..+ ++++||++ .+++..++..|.+.|.+++|.|. .
T Consensus 239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh~~----------~--- 298 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWHPY----------E--- 298 (463)
T ss_pred cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEecCC----------C---
Confidence 3568888888888874 37899999876 69999995 68899999999999999999973 2
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCcEEEEEeCCC---eEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSPR---IVA 206 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~t-g~~V~tL~f~s~V~sV~~s~~---iLa 206 (838)
|.+++ + |++ +++|.+.|+|. .+.-...+|.+.|-.|.+++. .+.
T Consensus 299 p~~LL-s---------------------Gs~----------D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 299 PSVLL-S---------------------GSY----------DGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred ceEEE-e---------------------ccc----------cceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 33333 2 223 38999999993 444567789999999999874 555
Q ss_pred EEe-CCeEEEEECCCC-ceeeEEeecCCc
Q 003221 207 VGL-ATQIYCFDALTL-ENKFSVLTYPVP 233 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~-e~l~tL~t~p~p 233 (838)
++. ++.+|-||++.. ++++++..|-.+
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCC
Confidence 555 568999999987 778888877553
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.96 E-value=1.7e-06 Score=91.57 Aligned_cols=179 Identities=23% Similarity=0.313 Sum_probs=125.2
Q ss_pred CCEEEEEECCC-CeEEEEEeC-CCcEEEEEeCCC--eEEEEe--CCeEEEEECCCCceeeEEeecCCcccCCCCcccccc
Q 003221 172 PTAVRFYSFQS-HCYEHVLRF-RSSVCMVRCSPR--IVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (838)
Q Consensus 172 p~tV~IWDl~t-g~~V~tL~f-~s~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~ 245 (838)
++++.+||..+ ...+..+.. ...|..+.+.++ .++++. +..+++|++.+.+.+..+..+..+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 36899999998 676676655 468888999875 455554 678999999986666655442221
Q ss_pred ccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCC
Q 003221 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (838)
Q Consensus 246 g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs 325 (838)
. ..+++.++. ..++
T Consensus 201 -v-------~~~~~~~~~---------------------------~~~~------------------------------- 214 (466)
T COG2319 201 -V-------SSLAFSPDG---------------------------GLLI------------------------------- 214 (466)
T ss_pred -e-------EEEEEcCCc---------------------------ceEE-------------------------------
Confidence 1 112222110 0000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcc
Q 003221 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (838)
Q Consensus 326 ~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (838)
. .+..++.|.+||...+..+. .+..|.... ...|+|++.++++++.++. +++|++...
T Consensus 215 ---------------~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-- 273 (466)
T COG2319 215 ---------------A--SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-- 273 (466)
T ss_pred ---------------E--EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC--
Confidence 0 12457889999999888877 799999886 4499999999999998665 999999532
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 405 ~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
. ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.....
T Consensus 274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 1 123333 333 45799999999999999999999999998766543
No 159
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=5.4e-07 Score=103.47 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=62.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.|.++|+.+++. ..+..+.......+|+|||++||.++.++ ..|.+||+.. | ....|..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-------g-----------~~~~Lt~ 372 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLTD 372 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-------C-----------CeEEeCC
Confidence 355556665543 34444444566789999999999877543 3477788743 2 2233332
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCe---EEEEecCCCCCccccccCCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGT---CHVFVLSPFGGDSGFQTLSSQ 475 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGT---VhIw~l~~~gg~~~~~~H~~~ 475 (838)
+. ...+.+|||||++|+.++.++. +.+++++ .+....+.+|...
T Consensus 373 ~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~ 419 (429)
T PRK03629 373 TF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ 419 (429)
T ss_pred CC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCC
Confidence 21 2346889999999999998876 4444542 2223445555433
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=8.5e-08 Score=110.73 Aligned_cols=190 Identities=18% Similarity=0.222 Sum_probs=124.6
Q ss_pred CEEEEEECCCCeEEE-EE--eCCCcEEEEEeCC--CeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccccc
Q 003221 173 TAVRFYSFQSHCYEH-VL--RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~-tL--~f~s~V~sV~~s~--~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
+.|.||+++.+=+.. ++ .-...|-++++.+ +++.+++.+.|.-||+.+++.++.+.....+ .
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~-------------I 113 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA-------------I 113 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc-------------e
Confidence 679999998864332 22 2245899999974 5778889999999999999988766432111 0
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
=.||+ .+ ++..+
T Consensus 114 Wsiai-------~p---------------------------~~~~l---------------------------------- 125 (691)
T KOG2048|consen 114 WSIAI-------NP---------------------------ENTIL---------------------------------- 125 (691)
T ss_pred eEEEe-------CC---------------------------ccceE----------------------------------
Confidence 01111 11 00000
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEE--EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v--~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~ 405 (838)
+ -+..+|.+..++...++.. ..|.--++.|.+|+|+|+|+.||+|+.|| +|||||+..
T Consensus 126 -----------~----IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~---- 185 (691)
T KOG2048|consen 126 -----------A----IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS---- 185 (691)
T ss_pred -----------E----eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC----
Confidence 0 1234665555555554432 33444578999999999999999999976 599999964
Q ss_pred CCCCCCccccCCcceE-----EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCC
Q 003221 406 SGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (838)
Q Consensus 406 ~~~G~~~~~~~~~~~~-----l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~ 476 (838)
|. ..+ +.++.++ ....||++.|=.|+ .|++|.+.|||.+||-........+.-|.+.+
T Consensus 186 ---~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV 248 (691)
T KOG2048|consen 186 ---GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADV 248 (691)
T ss_pred ---Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcce
Confidence 21 122 2233332 24469999998776 58899999999999987665555556665544
No 161
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=9.9e-09 Score=119.60 Aligned_cols=100 Identities=12% Similarity=0.264 Sum_probs=84.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+|++||+|++||+...+-..+|.+....|..++|+|. +..+|++.+.| +++.||+... ..
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG-~lqlWDlRqp------------------~r 211 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG-YLQLWDLRQP------------------DR 211 (839)
T ss_pred ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc-eEEEeeccCc------------------hh
Confidence 5889999999999999999999999999999999995 78888888755 6999999631 22
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+.+..-.|+..|.++.|+|+..|||+|+.|++|+||++..
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 3332334567899999999999999999999999999974
No 162
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.90 E-value=1.1e-07 Score=110.10 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=149.6
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
+..++-|....++|||-... .+...+.+|.++|+|++++|+-. + -+.+ |+|+
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~-------~---~a~~--vsG~--------------- 76 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSE-------I---VAEM--VSGD--------------- 76 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEccccc-------c---cceE--EEcc---------------
Confidence 55788888889999997543 35677889999999999998632 1 1223 4442
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEeCCCeEEE-EeCCeEEEEECCCCc--eeeEEe
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAV-GLATQIYCFDALTLE--NKFSVL 228 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s---~V~sV~~s~~iLaV-~l~~~I~IwD~~t~e--~l~tL~ 228 (838)
+++.|++|-++.....+.+.+.. .+.+|...+....+ +.++.+++||...-+ ++..+.
T Consensus 77 ----------------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~r 140 (764)
T KOG1063|consen 77 ----------------SDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLR 140 (764)
T ss_pred ----------------CCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhee
Confidence 24789999999666556555543 44555444444433 567789999985433 111111
Q ss_pred ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcc
Q 003221 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (838)
Q Consensus 229 t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~G 308 (838)
..... .-+++ |+...+ .+.++.
T Consensus 141 -f~~k~------------~ipLc-----L~~~~~---------------------------~~~~ll------------- 162 (764)
T KOG1063|consen 141 -FEIKE------------AIPLC-----LAALKN---------------------------NKTFLL------------- 162 (764)
T ss_pred -hhhhh------------HhhHH-----Hhhhcc---------------------------CCcEEE-------------
Confidence 00000 00111 111110 000000
Q ss_pred ccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC--CCcEEEEeccCCCCeEEEEECCCCC---E
Q 003221 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDPSGT---L 383 (838)
Q Consensus 309 l~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~--s~~~v~~~~aH~spIsaLaFSPdGt---l 383 (838)
+-|..+-.|.++.-. +-+.+..+++|+..|..|+|...|. +
T Consensus 163 ----------------------------------a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~ 208 (764)
T KOG1063|consen 163 ----------------------------------ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLL 208 (764)
T ss_pred ----------------------------------EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEE
Confidence 012223344444433 2356789999999999999999766 8
Q ss_pred EEEEecCCCEEEEEecCCCcccC--CC---CCCccccCCcceEEEEE---------ecccccccEEEEEEccCCCEEEEE
Q 003221 384 LVTASVYGNNINIFRIMPSCMRS--GS---GNHKYDWNSSHVHLYKL---------HRGITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 384 LATAS~dGt~IrVwdi~p~~~~~--~~---G~~~~~~~~~~~~l~~L---------~RG~t~a~I~sIaFSpDg~~Las~ 449 (838)
|||+|+ ++.||||.+.....-. .. -....+ ......+.++ .-|++. .|+++-|+|++..|.++
T Consensus 209 laS~SQ-D~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 209 LASSSQ-DRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSA 285 (764)
T ss_pred EEecCC-ceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheec
Confidence 888888 6789999986531000 00 000000 1111222222 237554 69999999999999999
Q ss_pred eCCCeEEEEecCCC
Q 003221 450 SSKGTCHVFVLSPF 463 (838)
Q Consensus 450 S~dGTVhIw~l~~~ 463 (838)
|.|.|+.||.-...
T Consensus 286 SaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 286 SADKSMIIWKPDEN 299 (764)
T ss_pred ccCcceEEEecCCc
Confidence 99999999986554
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=106.31 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=55.7
Q ss_pred eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003221 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~ 451 (838)
|+.+.+-||++.||||+.||+ ||||.-.+ + ..|..|. .|.+.|++++|+||...+|++|.
T Consensus 254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLk--yHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLK--YHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhh--hhhcceeEEEeCCCCchhhhccC
Confidence 455667799999999999876 99998754 2 2444443 24467999999999999999999
Q ss_pred CCeEEEEec
Q 003221 452 KGTCHVFVL 460 (838)
Q Consensus 452 dGTVhIw~l 460 (838)
|++|-+|+|
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.89 E-value=7.5e-09 Score=112.67 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=82.8
Q ss_pred cccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 343 ADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 343 ~~g~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
++++-||.|+|||++++. .....+||.+-|+.|.|+..-.+||+|+.+|+ ++|||++... .| +
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~----~~----------~ 338 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFK----SG----------Q 338 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhcc----CC----------C
Confidence 367889999999999872 22334899999999999999889999999887 9999996531 11 2
Q ss_pred EEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCCCC
Q 003221 421 HLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~~~g 464 (838)
.+..|.+ |.+.|++|.|+|. ...||+++.|.+|.||||....
T Consensus 339 pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 339 PVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred cceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 3444433 4468999999974 6689999999999999997543
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.87 E-value=3.6e-08 Score=113.09 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=73.3
Q ss_pred CCCceEEEEECCCCcE------E--EEeccC---CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccc
Q 003221 346 DNAGIVVVKDFVTRAI------I--SQFKAH---TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~------v--~~~~aH---~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~ 414 (838)
..||.|+|||+..... . ..+.-| ...+.+|..+..|++|.....|++ |..|++... +.
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~------s~---- 305 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSL------SI---- 305 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEecccc------Cc----
Confidence 4699999999986432 1 222233 336789999999998776666565 999998542 10
Q ss_pred cCCcceEEEEEecccccc--cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccc-cccCCCCC
Q 003221 415 WNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQG 476 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~a--~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~-~~~H~~~~ 476 (838)
..+..+ .|.-+. .|. -..|||+++|+++|.|+-+.||.++.....+. +.+|.-.|
T Consensus 306 -----sP~~~~-sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 306 -----SPVAEF-SGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred -----Cchhhc-cCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 011111 111111 122 24689999999999999999999988776544 46775433
No 166
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.5e-06 Score=99.70 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=53.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.|.++|+.+++. ..+..+...+...+|+|||++||..+.++ ..|.+||+.. + ....+..
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-------~-----------~~~~lt~ 375 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-------S-----------GERILTS 375 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-------C-----------ceEeccC
Confidence 578888776554 33433455567789999999999877543 3466677531 1 1222322
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
+. .+.+.+|||||++|+..+.+
T Consensus 376 ~~---~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 376 GF---LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CC---CCCCCeECCCCCEEEEEEcc
Confidence 22 36789999999999887664
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.84 E-value=7.7e-08 Score=107.64 Aligned_cols=207 Identities=14% Similarity=0.270 Sum_probs=139.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
...++.|..++ ++|||+. ...+++-+..|...|.+|.+.-+ .-.||.|+-+
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-------------DeyiAsvs~g-------------- 142 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-------------DEYIASVSDG-------------- 142 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-------------cceeEEeccC--------------
Confidence 35566666666 8999996 56677888889999999987732 2367765521
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--cEEEEEeCC--C-eEEE-EeCCeEEEEECCCCceeeEE
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--R-IVAV-GLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s--~V~sV~~s~--~-iLaV-~l~~~I~IwD~~t~e~l~tL 227 (838)
+-|.|-.++++..-.++...+ .|.-+++++ + +|.. +.++.|.+||+..+...+..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 458888999988877777663 566777765 3 4444 55667999999988776654
Q ss_pred e-ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhh
Q 003221 228 L-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (838)
Q Consensus 228 ~-t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la 306 (838)
. .|..|- . -+++ ++ ++.-+.+
T Consensus 204 ~~~HsAP~------~-------gicf-------sp---------------------------sne~l~v----------- 225 (673)
T KOG4378|consen 204 SEAHSAPC------R-------GICF-------SP---------------------------SNEALLV----------- 225 (673)
T ss_pred hhhccCCc------C-------ccee-------cC---------------------------CccceEE-----------
Confidence 4 244440 0 0112 11 1111111
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003221 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (838)
Q Consensus 307 ~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLAT 386 (838)
+...|..|.+||..+.+....+. ...|+++|+|+++|++|+.
T Consensus 226 -------------------------------------sVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 226 -------------------------------------SVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred -------------------------------------EecccceEEEeecccccccceee-ecCCcceeeecCCceEEEe
Confidence 12457789999999877666664 3579999999999999999
Q ss_pred EecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
|+.+|. |.-||+.- . ...+..+. .+.+.|++|+|-+--
T Consensus 268 G~s~G~-~i~YD~R~--------~--------k~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGE-LIAYDMRS--------T--------KAPVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCce-EEEEeccc--------C--------CCCceEee--ecccceeEEEeeecc
Confidence 999998 67899852 1 12333332 344569999998754
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.83 E-value=5.3e-06 Score=87.77 Aligned_cols=226 Identities=16% Similarity=0.243 Sum_probs=148.1
Q ss_pred EEEEe-cCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCc
Q 003221 78 LLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV 156 (838)
Q Consensus 78 L~lG~-~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~ 156 (838)
+..+. +..+++||+.........+..|...|..+.+.|+. ..++. +..
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~--~~~---------------- 175 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLAS--GSS---------------- 175 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEe--cCC----------------
Confidence 33344 34599999964245566777888899999998753 13332 110
Q ss_pred ccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEE--EeCCeEEEEECCCCceee-EEeec
Q 003221 157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAV--GLATQIYCFDALTLENKF-SVLTY 230 (838)
Q Consensus 157 ~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV--~l~~~I~IwD~~t~e~l~-tL~t~ 230 (838)
..+.+++|+..++..+..+.. ...|..++++++ .+++ +.+..|++||..+++... .+..+
T Consensus 176 --------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 176 --------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred --------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 136899999999888888875 568999999865 2444 456789999888666555 23332
Q ss_pred CCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccc
Q 003221 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (838)
Q Consensus 231 p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ 310 (838)
... . +. .+... + .++
T Consensus 242 ~~~--------------~-~~------~~~~~---------------------------~-~~~---------------- 256 (466)
T COG2319 242 SDS--------------V-VS------SFSPD---------------------------G-SLL---------------- 256 (466)
T ss_pred Ccc--------------e-eE------eECCC---------------------------C-CEE----------------
Confidence 221 0 00 11110 0 000
Q ss_pred ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEec
Q 003221 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 311 ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~-v~~~~aH~spIsaLaFSPdGtlLATAS~ 389 (838)
. .+..++.+++||+..... +..+..|..+|.++.|+|++..+++++.
T Consensus 257 ----------------------------~----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 257 ----------------------------A----SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred ----------------------------E----EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 0 134688999999987664 5555789999999999999999999888
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccCCCEEEEE-eCCCeEEEEecCCCC
Q 003221 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (838)
Q Consensus 390 dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG~t~a~I~sIaFSpDg~~Las~-S~dGTVhIw~l~~~g 464 (838)
+ ..+++|++... ....... .++. ..|..+.|++++..++.+ ..|+++.+|++....
T Consensus 305 d-~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 305 D-GTVRLWDLETG-----------------KLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred C-CcEEEEEcCCC-----------------ceEEEeeecccC-CceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 7 45999987531 1222221 2322 258999995443566666 688999999987654
No 169
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.3e-08 Score=102.84 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=76.6
Q ss_pred cCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCC---C-----------CEEEEEecCCCEEEEEecCCCcccCC
Q 003221 345 MDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPS---G-----------TLLVTASVYGNNINIFRIMPSCMRSG 407 (838)
Q Consensus 345 g~~~G~V~VwDl~s~---~~v~~~~aH~spIsaLaFSPd---G-----------tlLATAS~dGt~IrVwdi~p~~~~~~ 407 (838)
+..||.|.|.++.+. .....+.+|.--|+++++.|. | +.||||+-| ..++||+...
T Consensus 122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD-n~VkiW~~~~------ 194 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD-NLVKIWKFDS------ 194 (299)
T ss_pred eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc-cceeeeecCC------
Confidence 456889999888764 234567799999999999997 7 779999994 5699999843
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEecCC
Q 003221 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 408 ~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg----~~Las~S~dGTVhIw~l~~ 462 (838)
+ . ..+-...+|++ ..|.++||.|.- .+||++|.||+|.||....
T Consensus 195 -~----~-----w~~e~~l~~H~-dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 195 -D----S-----WKLERTLEGHK-DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred -c----c-----hhhhhhhhhcc-hhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 2 1 22323235654 469999999974 5799999999999999873
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.81 E-value=3.1e-07 Score=100.36 Aligned_cols=109 Identities=17% Similarity=0.345 Sum_probs=70.0
Q ss_pred ccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCC----cccc
Q 003221 344 DMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH----KYDW 415 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s---~~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~----~~~~ 415 (838)
+|+.+|++.|||++. ++.+++|+-|..||++|.|+|. .+.||.++. +..|.|||+.....-...+.. ..+.
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~QitiWDlsvE~D~ee~~~~a~~~L~dl 397 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQITIWDLSVEADEEEIDQEAAEGLQDL 397 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcEEEEEeeccCChhhhccccccchhcC
Confidence 467899999999975 6789999999999999999995 334444555 456999999643210000000 0011
Q ss_pred CCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEe
Q 003221 416 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFV 459 (838)
Q Consensus 416 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~ 459 (838)
.+ ++|+ .+.|. ..|..|.|.+.- -+|++.+.||. .||.
T Consensus 398 Pp--QLLF-VHqGQ--ke~KevhWH~QiPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 398 PP--QLLF-VHQGQ--KEVKEVHWHRQIPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred Cc--eeEE-Eecch--hHhhhheeccCCCCeEEEecccce-eEEE
Confidence 11 2333 34453 358899999873 47778888884 4443
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=6.6e-08 Score=104.48 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=77.8
Q ss_pred CceEEEEECCCCcE-E-EEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 348 AGIVVVKDFVTRAI-I-SQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 348 ~G~V~VwDl~s~~~-v-~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
+-.|.+||+++.+. + .-+..|..-|++|+|.|+ -.+|+|||.|| .++|||+.-. + ..-.++..
T Consensus 142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d---~----------EeDaL~~v 207 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKD---N----------EEDALLHV 207 (376)
T ss_pred ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCCC---c----------chhhHHHh
Confidence 45799999987654 4 345689999999999995 67999999987 5999999632 0 01123333
Q ss_pred EecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCccc
Q 003221 425 LHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~gg~~~ 468 (838)
+- +...|-++.|..++ +.|.+-+..+|..+|+++....+..
T Consensus 208 iN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 208 IN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred hc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 32 23469999999998 3588889999999999998764433
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.76 E-value=5.2e-07 Score=95.97 Aligned_cols=93 Identities=18% Similarity=0.354 Sum_probs=67.8
Q ss_pred CCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 346 DNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 346 ~~~G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.....|.|.|+... ..++.++.|+..|+.+++.|. ...|+||+. ++..-|||+......+ +. ..-..|
T Consensus 263 ~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~q~~~~~--~~-------dPilay 332 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQQMPREN--GE-------DPILAY 332 (364)
T ss_pred cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEecccccccC--CC-------Cchhhh
Confidence 34567999999864 578999999999999999995 789999998 5678899996421101 10 001233
Q ss_pred EEecccccccEEEEEEc-cCCCEEEEEeCCC
Q 003221 424 KLHRGITSATIQDICFS-HYSQWIAIVSSKG 453 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFS-pDg~~Las~S~dG 453 (838)
+ . .+.|..|.|+ ..+.||+++..+.
T Consensus 333 ~--a---~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 333 T--A---GGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred h--c---cceeeeeeecccCCCEEEEEecCe
Confidence 3 2 2479999999 4688999998763
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.75 E-value=8.2e-06 Score=89.35 Aligned_cols=196 Identities=17% Similarity=0.278 Sum_probs=125.6
Q ss_pred EEEEEECCCCeEEEEEeCC----CcEEEEEeCCC--eEEEEe---CCeEEEEECCCCceeeEEeecCCcccCCCCccccc
Q 003221 174 AVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244 (838)
Q Consensus 174 tV~IWDl~tg~~V~tL~f~----s~V~sV~~s~~--iLaV~l---~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~ 244 (838)
.+.|||+++=+.+++++-. ..+.++.+|.. +||.=. .+.|++||+.+++..-++..|..+
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----------- 175 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----------- 175 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence 4999999999999999643 35788888775 777633 346999999999888887776553
Q ss_pred cccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCC
Q 003221 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (838)
Q Consensus 245 ~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~g 324 (838)
... |||..+ |.++|
T Consensus 176 --lAa-------lafs~~----------------------------G~llA----------------------------- 189 (391)
T KOG2110|consen 176 --LAA-------LAFSPD----------------------------GTLLA----------------------------- 189 (391)
T ss_pred --eeE-------EEECCC----------------------------CCEEE-----------------------------
Confidence 222 444432 11111
Q ss_pred CCCCccCCCccccccccccccCCCce-EEEEECCCCcEEEEeccCCC--CeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 325 SSSPVSPNSVWKVGRHAGADMDNAGI-VVVKDFVTRAIISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 325 s~s~~s~n~~~k~~~~~~~~g~~~G~-V~VwDl~s~~~v~~~~aH~s--pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
+++..|+ |+|+++.+++.+.+|+--.. .|.+|+|+||+++|+..|..++ |+||.+..
T Consensus 190 -------------------TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~ 249 (391)
T KOG2110|consen 190 -------------------TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEK 249 (391)
T ss_pred -------------------EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecc
Confidence 2334555 69999999999999986554 4689999999999999988776 99999864
Q ss_pred Cccc-CC---CCC-----CccccCC----cceEEEEEeccccc-----ccE-EEEEEc--cCCCEEEEEeCCCeEEEEec
Q 003221 402 SCMR-SG---SGN-----HKYDWNS----SHVHLYKLHRGITS-----ATI-QDICFS--HYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 402 ~~~~-~~---~G~-----~~~~~~~----~~~~l~~L~RG~t~-----a~I-~sIaFS--pDg~~Las~S~dGTVhIw~l 460 (838)
.... .. .+. .+.+..+ .........|-+.. +.. ..++|+ ++..++.+++.||.+..|.+
T Consensus 250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 3210 00 000 0000000 00111111111100 111 223455 57889999999999999999
Q ss_pred CCC-CCc
Q 003221 461 SPF-GGD 466 (838)
Q Consensus 461 ~~~-gg~ 466 (838)
++. ||+
T Consensus 330 ~~~~gGe 336 (391)
T KOG2110|consen 330 PPKEGGE 336 (391)
T ss_pred CCCCCce
Confidence 985 444
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.9e-08 Score=118.92 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=78.6
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCC--CeEEEEECCC-CCEEEEEecCCC--EEEEEecCCCcccCCCCCCccccCCcc
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPS-GTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~s--pIsaLaFSPd-GtlLATAS~dGt--~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
+..+|.+.|||++..+.+..|.-|.. .++.|+|+|+ -+.|++|+.|++ +|.+||++-. .
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------s-- 243 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------S-- 243 (1049)
T ss_pred cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------C--
Confidence 45678999999999888888876654 4788999998 567888887654 6999998531 0
Q ss_pred eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~g 464 (838)
..+.+| +|+.. .|.+|.|++.+ ++|++++.|+.|.+|+.++.+
T Consensus 244 sP~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 244 SPLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred Cchhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 234444 45433 49999999866 899999999999999998743
No 175
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=5.5e-06 Score=95.12 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=47.6
Q ss_pred eEEEEECCCCCEEEEEecCCC--EEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003221 372 ISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~ 449 (838)
....+|||||++||.++.++. .|.+||+.. | ....+..+ ....+.+|+|||++|+.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYA 388 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEE
Confidence 345789999999998776543 588898853 2 12223222 124678999999999988
Q ss_pred eCCC-eEEEEecCCCC
Q 003221 450 SSKG-TCHVFVLSPFG 464 (838)
Q Consensus 450 S~dG-TVhIw~l~~~g 464 (838)
+.++ .-.++-++..+
T Consensus 389 ~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 389 TQQGGRSVLAAVSSDG 404 (427)
T ss_pred EecCCCEEEEEEECCC
Confidence 8665 34455554444
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.72 E-value=1.2e-06 Score=93.14 Aligned_cols=246 Identities=16% Similarity=0.216 Sum_probs=150.8
Q ss_pred CCeEEEEEec--------CcEEEEEccCCCce-----eEEeee----ccCcEEEEEEecCCCCCCCCCCcccCCcEEEEE
Q 003221 74 FKQVLLLGYQ--------NGFQVLDVEDASNF-----NELVSK----RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (838)
Q Consensus 74 ~~~vL~lG~~--------~G~qVWdv~~~g~v-----~ells~----hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV 136 (838)
++++|++.|. .+.-||.+...-+- .|.+.. +-|.|.||.+-|+. . .||.+
T Consensus 75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----------~---klasm 141 (370)
T KOG1007|consen 75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS----------D---KLASM 141 (370)
T ss_pred CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----------C---eeEEe
Confidence 5788999987 45789999643222 233333 33789999999863 1 23322
Q ss_pred ECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE-EEEEeC------CCcEEEEEeCC----CeE
Q 003221 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRF------RSSVCMVRCSP----RIV 205 (838)
Q Consensus 137 ~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-V~tL~f------~s~V~sV~~s~----~iL 205 (838)
. .+.|.+|++..+.. +..+.- +..-.+-+++| +.+
T Consensus 142 ~----------------------------------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 142 D----------------------------------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred c----------------------------------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 1 26799999987765 555432 22345556666 378
Q ss_pred EEEeCCeEEEEECCCCceeeEEee-cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCC
Q 003221 206 AVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (838)
Q Consensus 206 aV~l~~~I~IwD~~t~e~l~tL~t-~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~ 284 (838)
++..+..+.+||++|+++.+.+.. |. .+. |-|-|.++. |+
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHg-----------------q~v---rdlDfNpnk-----------q~-------- 228 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHG-----------------QRV---RDLDFNPNK-----------QH-------- 228 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhc-----------------cee---eeccCCCCc-----------eE--------
Confidence 899999999999999988776653 11 110 222232221 00
Q ss_pred CCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC-CcEEE
Q 003221 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIIS 363 (838)
Q Consensus 285 stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s-~~~v~ 363 (838)
.+ ++++.||.|+|||... ...+.
T Consensus 229 ----------------------------------------------------~l----vt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 229 ----------------------------------------------------IL----VTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ----------------------------------------------------EE----EEcCCCccEEEEeccCCCcccc
Confidence 00 1356789999999986 45788
Q ss_pred EeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCC--CCCCcccc--CCcceEEEEEecc------cccc
Q 003221 364 QFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKYDW--NSSHVHLYKLHRG------ITSA 432 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~--~G~~~~~~--~~~~~~l~~L~RG------~t~a 432 (838)
.+.+|.+.|.++.|+|. .+||.|++.|-. +.+|......+... .+..-.+. ....++...|.-| .+..
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 99999999999999996 678889998654 77887632100000 00000000 0000111112111 1234
Q ss_pred cEEEEEEccCCCEE-EEEeCCCeEEEEecCC
Q 003221 433 TIQDICFSHYSQWI-AIVSSKGTCHVFVLSP 462 (838)
Q Consensus 433 ~I~sIaFSpDg~~L-as~S~dGTVhIw~l~~ 462 (838)
.|++++||.-.-|+ |+-|-||-+.|=.+.+
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 69999999877775 5678899998877654
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.72 E-value=4.4e-07 Score=99.63 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=92.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeE------EeeeccCcEEEEEEecCCCCCCCCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE------LVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~e------lls~hdg~V~~l~~lP~p~~~~~~d 124 (838)
.-+|+.+|+-+.|+- -+ .++++.|.++. +.||++.+.+..+. .|.+|...|..|++-|.-
T Consensus 77 v~GHt~~vLDi~w~P--fn----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA------- 143 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP--FN----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA------- 143 (472)
T ss_pred ccCccccccccccCc--cC----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-------
Confidence 356888887665533 22 36999999875 99999976654432 345688889999988752
Q ss_pred CcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC-
Q 003221 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR- 203 (838)
Q Consensus 125 ~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~- 203 (838)
.+.|+..+ .+++|.+||+.||+.+-+|+++..|+++.||.+
T Consensus 144 -----~NVLlsag---------------------------------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 144 -----PNVLLSAG---------------------------------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG 185 (472)
T ss_pred -----hhhHhhcc---------------------------------CCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence 23443311 237999999999999999999999999999986
Q ss_pred -eEEE-EeCCeEEEEECCCCceeeEE
Q 003221 204 -IVAV-GLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 204 -iLaV-~l~~~I~IwD~~t~e~l~tL 227 (838)
+|+. |-+..|+|||.++++.+..-
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeec
Confidence 5555 44668999999999876543
No 178
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=3.9e-06 Score=96.35 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=57.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.|.++|+.+++.. .+..+.......+|||||++||..+.++ ..|.+||+.. | ....|..
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-------g-----------~~~~Lt~ 377 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-------G-----------SVRTLTP 377 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-------C-----------CeEECCC
Confidence 3666676665432 2222333445789999999999876543 3588999853 2 1223433
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~d-GTVhIw~l~~~gg 465 (838)
+. ...+.+|||||++|+..+.+ |.-+||.++..++
T Consensus 378 ~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 378 GS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 32 24467999999998887764 4445555544443
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.71 E-value=7.4e-07 Score=104.66 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=76.1
Q ss_pred CceEEEEECC-CCcEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFV-TRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~-s~~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
|.+|+||.-. ....+..+.-+...|.+++|||. -..+|++..+|+ |.|||+.-.. . ..+.+.
T Consensus 419 DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~----~-----------~Pv~s~ 482 (555)
T KOG1587|consen 419 DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDD----E-----------EPVLSQ 482 (555)
T ss_pred cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccc----c-----------CCcccc
Confidence 8899999988 66677888888889999999997 468888888886 9999996421 0 112222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+ ......+.|+++|+.|++|...|++|+|+|..
T Consensus 483 ~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 483 KVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 222 23467788999999999999999999999964
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.4e-06 Score=103.45 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=80.8
Q ss_pred ccCCCceEEEEECCC--C--cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 344 DMDNAGIVVVKDFVT--R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s--~--~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
.++.+|.|.||.--. + .....|.=|..+|.+|+|++||.+|.||+..| ++-+|.+.+. + .
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T~------~---------k 285 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLETG------K---------K 285 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecCC------C---------c
Confidence 467789999996433 2 24577788999999999999999999999976 5889999652 1 1
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccc
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
+.|-+| .+.|..+.+|||+...+..-.|..+|+-..........+
T Consensus 286 qfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 286 QFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred cccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 222222 358999999999999999999999999887655444333
No 181
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=6.4e-08 Score=103.57 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=83.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc-----
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS----- 418 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~----- 418 (838)
.|-.+|.|.|||+.+...-..|.||..||.+||||+||++|+|+|. +..|.+||+.....--.-.-.++-|...
T Consensus 40 vGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k 118 (405)
T KOG1273|consen 40 VGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRK 118 (405)
T ss_pred eeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-CceeEEEeccCCCceeEEEccCccceeeecccc
Confidence 3678999999999999988999999999999999999999999999 5679999996421000000000001000
Q ss_pred -ceE----------EEEEec-----------ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccc
Q 003221 419 -HVH----------LYKLHR-----------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 419 -~~~----------l~~L~R-----------G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
... +..+.- |..+..-.+..|.+-|++|.+|+.+|.++|++.++.+....++
T Consensus 119 ~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r 192 (405)
T KOG1273|consen 119 RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR 192 (405)
T ss_pred CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeee
Confidence 000 011110 0000001123477889999999999999999999887655544
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.68 E-value=2.2e-07 Score=106.19 Aligned_cols=97 Identities=14% Similarity=0.280 Sum_probs=74.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
+.+|-+|++||+.+.+....|.+|+..|..++|||||+++||...||+ ||||+-.. + .+.+|+
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs-------~---------e~pv~E 758 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRS-------R---------EQPVYE 758 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCC-------C---------CCcccc
Confidence 467889999999999999999999999999999999999999999887 99998642 1 134444
Q ss_pred Ee--cccccccEEEEEEccCCCEEEEEeCCCe----EEEEecC
Q 003221 425 LH--RGITSATIQDICFSHYSQWIAIVSSKGT----CHVFVLS 461 (838)
Q Consensus 425 L~--RG~t~a~I~sIaFSpDg~~Las~S~dGT----VhIw~l~ 461 (838)
-. .|...| -|.|.-||++|++.+.|.. |.+|+-.
T Consensus 759 g~gpvgtRgA---Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 759 GKGPVGTRGA---RILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CCCCccCcce---eEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 21 122223 3568899999999887752 5555543
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.4e-06 Score=104.60 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=75.2
Q ss_pred ccCCCceEEEEECCCCc--EEEEeccCC--C-CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 344 DMDNAGIVVVKDFVTRA--IISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~--~v~~~~aH~--s-pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
+++++|.|++||+.... ..-++..|. + .+++|..+++...+|+|+. ..|+||++. |.
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--q~ikIy~~~--------G~-------- 1335 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--QLIKIYSLS--------GE-------- 1335 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--ceEEEEecC--------hh--------
Confidence 46789999999998632 234455554 3 5999999999999999997 469999984 31
Q ss_pred ceEEEEE-----ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 419 HVHLYKL-----HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 419 ~~~l~~L-----~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
++..+ .-|.....+.|++|+|---.||+|+.|.||-||..+..
T Consensus 1336 --~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 --QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 22211 12223335799999999999999999999999997654
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.66 E-value=8.2e-08 Score=112.60 Aligned_cols=280 Identities=18% Similarity=0.197 Sum_probs=173.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
.-+|..-|..|-||+ .++.++.|+++- ++||..+ ++.+...+.+|.|.++.+++.- ++
T Consensus 186 LlgH~naVyca~fDr-------tg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs~-------------~n 244 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-------TGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVSS-------------NN 244 (1113)
T ss_pred HHhhhhheeeeeecc-------ccceEeecCccceeeeeecc-chhhhccCCCCccccchhccch-------------hh
Confidence 566788899999998 257888999886 8999975 5777778889999998887662 12
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCCeEEEEe
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL 209 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~iLaV~l 209 (838)
-++|. ++. ++.|++|-+.++..|..|. +.+.|.+|+|+|+. +.+.
T Consensus 245 ~~iaa-----------------------aS~----------D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~ 290 (1113)
T KOG0644|consen 245 TMIAA-----------------------ASN----------DKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSD 290 (1113)
T ss_pred hhhhh-----------------------ccc----------CceEEEEecCCCchHHHHhccccceeeeccCccc-cCCC
Confidence 23322 222 3789999999999999986 45799999999986 6677
Q ss_pred CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps 289 (838)
++.+++||++ ++.+ ...|.|-. +..-. -...+-+...|.+|.+ |+.
T Consensus 291 dgt~~~wd~r-~~~~---~y~prp~~----~~~~~-~~~s~~~~~~~~~f~T--------gs~----------------- 336 (1113)
T KOG0644|consen 291 DGTCRIWDAR-LEPR---IYVPRPLK----FTEKD-LVDSILFENNGDRFLT--------GSR----------------- 336 (1113)
T ss_pred CCceEecccc-cccc---ccCCCCCC----ccccc-ceeeeecccccccccc--------ccC-----------------
Confidence 7899999998 3222 22233210 00000 0001111112222221 110
Q ss_pred CCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC
Q 003221 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 369 (838)
Q Consensus 290 ~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~ 369 (838)
+..++. -..-+++.. ..+.-|.. .. + +. .... .++..+-.+.+|++.++..+..+.+|.
T Consensus 337 --d~ea~n--~e~~~l~~~--~~~lif~t-----~s-s----d~--~~~~---~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 337 --DGEARN--HEFEQLAWR--SNLLIFVT-----RS-S----DL--SSIV---VTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred --Cccccc--chhhHhhhh--ccceEEEe-----cc-c----cc--cccc---eeeeeeeEeeeeecccchhhhhhcccc
Confidence 000000 000001100 00000000 00 0 00 0000 023456678899999999999999999
Q ss_pred CCeEEEEECCCCCEEE-EEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 370 SPISALCFDPSGTLLV-TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 370 spIsaLaFSPdGtlLA-TAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
.++..|.|+|=...++ +|+-||. +.|||+.. | ...+.|. .| ...+.+-+||+||+.++.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-------g--------~pik~y~--~g--h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-------G--------IPIKHYF--IG--HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCc-eEeeeccc-------C--------Ccceeee--cc--cceeeccccCCCCceEec
Confidence 9999999999665555 6788777 66999953 3 1123333 45 245888999999999999
Q ss_pred EeCCCeEEEEecC
Q 003221 449 VSSKGTCHVFVLS 461 (838)
Q Consensus 449 ~S~dGTVhIw~l~ 461 (838)
.-+-|.+.|+...
T Consensus 456 sd~hgql~i~g~g 468 (1113)
T KOG0644|consen 456 SDDHGQLYILGTG 468 (1113)
T ss_pred CCCCCceEEeccC
Confidence 9999988887653
No 185
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.64 E-value=9.8e-07 Score=101.58 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=67.5
Q ss_pred CceEEEEECCCCc--EEEEeccCCCCe--EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFVTRA--IISQFKAHTSPI--SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~s~~--~v~~~~aH~spI--saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
|+.|..||+.+.. .+..|.+|...= ..-..+|||.+|++|+.+++ ..||.+... +.--
T Consensus 292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~-ayiw~vs~~-----------------e~~~ 353 (720)
T KOG0321|consen 292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ-AYIWVVSSP-----------------EAPP 353 (720)
T ss_pred CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc-eeeeeecCc-----------------cCCh
Confidence 7889999987643 345555543211 23457999999999999776 889998531 0111
Q ss_pred EEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEecCCCCCcc
Q 003221 424 KLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSp--Dg~~Las~S~dGTVhIw~l~~~gg~~ 467 (838)
.+..|++. .|.+++|.| ++. ++++|+|-+++||+|..+..+.
T Consensus 354 ~~l~Ght~-eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 354 ALLLGHTR-EVTTVRWLPSATTP-VATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred hhhhCcce-EEEEEeeccccCCC-ceeeccCcceEEEeccCchhhc
Confidence 12245543 589999975 444 6667999999999997655443
No 186
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.63 E-value=3e-07 Score=94.68 Aligned_cols=93 Identities=15% Similarity=0.300 Sum_probs=71.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+..++.|.+||+. .+.+..|. ..+++.+.|||+|++||+|+.++ ..|.+||+.. . ..+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~i 138 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KKI 138 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EEe
Confidence 4556799999997 56666664 56889999999999999998632 2499999953 1 455
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEecC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 461 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~------dGTVhIw~l~ 461 (838)
.++.. ..+..++|||||++|++++. |..++||++.
T Consensus 139 ~~~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 STFEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ecccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 55432 24789999999999999885 6789999984
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.8e-07 Score=100.10 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=61.9
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
...|++|+.|+||+++|-++.+|. |-|++...- +.++-..+- |..-|+.|.|+||.++++.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~a-H~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEA-HLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhh-heeeeeeEEEcCCcCcccc
Confidence 457999999999999999999886 789998531 344444443 3447999999999999999
Q ss_pred EeCCCeEEEEecCC
Q 003221 449 VSSKGTCHVFVLSP 462 (838)
Q Consensus 449 ~S~dGTVhIw~l~~ 462 (838)
.|.+.+.+|..|..
T Consensus 342 vSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 342 VSSDNEAAVTKLAV 355 (398)
T ss_pred cccCCceeEEEEee
Confidence 99999999999865
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.63 E-value=7.5e-06 Score=90.50 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=65.6
Q ss_pred eEEEEECCC-CcEEEEeccCCCCeEEEEECC------------------CCCEEEEEecCCCEEEEEecCCCcccCCCCC
Q 003221 350 IVVVKDFVT-RAIISQFKAHTSPISALCFDP------------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (838)
Q Consensus 350 ~V~VwDl~s-~~~v~~~~aH~spIsaLaFSP------------------dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~ 410 (838)
+..+|+-.. .+.+..+..-..+..++.|+| -+..+|.|.. . .+.|||.+..
T Consensus 262 ~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~-svyvydtq~~-------- 331 (434)
T KOG1009|consen 262 TSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-N-SVYVYDTQTL-------- 331 (434)
T ss_pred eeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-c-eEEEeccccc--------
Confidence 345555443 345667777777777777765 2345666766 2 4889997531
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 411 ~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..++.. -+.|-..|++|+||+||..|+++|.||-+-+-.+++..
T Consensus 332 ---------~P~~~v-~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 332 ---------EPLAVV-DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ---------cceEEE-eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 344443 34555679999999999999999999999888877654
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.60 E-value=6.1e-05 Score=81.43 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=76.7
Q ss_pred cCCCce-EEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCC--CCCCccc-c---
Q 003221 345 MDNAGI-VVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKYD-W--- 415 (838)
Q Consensus 345 g~~~G~-V~VwDl~s~~~v~~~~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~--~G~~~~~-~--- 415 (838)
++..|+ |+|||..+++.+..|+-- ...|.+|+|||++.+||.+|.+|| ++||.+.+....-. +-..... +
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpk 277 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPK 277 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccch
Confidence 455676 799999999999999742 346999999999999999999997 99999975321000 0000000 0
Q ss_pred -CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 416 -NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 416 -~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
-.+.+-..+++- ......-++|-.+.+-+++...||+-+=+.+.+..
T Consensus 278 y~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~ 325 (346)
T KOG2111|consen 278 YFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKN 325 (346)
T ss_pred hcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEecccc
Confidence 000111222211 11235568899887778888888998887777763
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=9.9e-07 Score=95.55 Aligned_cols=245 Identities=13% Similarity=0.183 Sum_probs=152.2
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
+...+++|+.+| +++||... ++..+.++.+.+.++.++|+-. + .|-++..++
T Consensus 39 ~e~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~-----------d-s~h~v~s~s-------------- 91 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISC-----------D-SPHGVISCS-------------- 91 (376)
T ss_pred cceeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecC-----------C-CCCeeEEec--------------
Confidence 456788999887 99999964 7788888988888888887731 1 223333221
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC----cE--EEEEeCCCeEEEEeCC-----eEEEEECCCC
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS----SV--CMVRCSPRIVAVGLAT-----QIYCFDALTL 221 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s----~V--~sV~~s~~iLaV~l~~-----~I~IwD~~t~ 221 (838)
++++|++||+|+...+..+.+.. +- ++..|+.++++++... .+++||++.-
T Consensus 92 ------------------sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 92 ------------------SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred ------------------cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 24789999999998888876632 33 4444466788887743 4999999976
Q ss_pred ce-eeEEe-ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeeh
Q 003221 222 EN-KFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (838)
Q Consensus 222 e~-l~tL~-t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ 299 (838)
+. +..+. +|..- ... |-|-++. -.
T Consensus 154 qq~l~~~~eSH~DD-------------VT~-------lrFHP~~---------------------------pn------- 179 (376)
T KOG1188|consen 154 QQLLRQLNESHNDD-------------VTQ-------LRFHPSD---------------------------PN------- 179 (376)
T ss_pred cchhhhhhhhccCc-------------cee-------EEecCCC---------------------------CC-------
Confidence 54 22222 12110 001 1111100 00
Q ss_pred hhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEE
Q 003221 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALC 376 (838)
Q Consensus 300 ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~---~v~~~~aH~spIsaLa 376 (838)
.+ .+|+.||-|.|||+.... .+.+...|.+.|.++.
T Consensus 180 ---------------------------------------lL--lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 180 ---------------------------------------LL--LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ---------------------------------------eE--EeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 00 146789999999997543 2344456888899999
Q ss_pred ECCCC-CEEEEEecCCCEEEEEecCCCccc---------------------------CCCCCC----ccccC--------
Q 003221 377 FDPSG-TLLVTASVYGNNINIFRIMPSCMR---------------------------SGSGNH----KYDWN-------- 416 (838)
Q Consensus 377 FSPdG-tlLATAS~dGt~IrVwdi~p~~~~---------------------------~~~G~~----~~~~~-------- 416 (838)
|..++ +.|.+-+..++ +.+|+++..... .+.+.. ..+..
T Consensus 219 w~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred eecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee
Confidence 99998 23555555455 899988653100 000000 00000
Q ss_pred -----CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 417 -----SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 417 -----~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
....++..|++| +...|.++.|...+..+.+|+.||-+.+|..
T Consensus 298 ~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ecccccccCccccccCC-cHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 001222334443 4457899999999999999999999999997
No 191
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.59 E-value=6.8e-05 Score=83.69 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=57.8
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec-ccccccEEEEEEccCCCEEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R-G~t~a~I~sIaFSpDg~~Las~ 449 (838)
....|+++|||++|..+......|-+|++.+. .|. ...+..+.- |. .-..++|+|||++|+++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g~--------l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TGT--------LTLVQTVPTGGK---FPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TTT--------EEEEEEEEESSS---SEEEEEE-TTSSEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CCc--------eEEEEEEeCCCC---CccEEEEeCCCCEEEEE
Confidence 57889999999999998887778999999432 121 122333322 32 36899999999999988
Q ss_pred e-CCCeEEEEecCCCCCcc
Q 003221 450 S-SKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 450 S-~dGTVhIw~l~~~gg~~ 467 (838)
. .+++|.+|++++..|..
T Consensus 310 ~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 310 NQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp ETTTTEEEEEEEETTTTEE
T ss_pred ecCCCeEEEEEEeCCCCcE
Confidence 7 55799999998766543
No 192
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.56 E-value=2.8e-06 Score=87.46 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=42.9
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC-----CCEEEEEecC
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRIM 400 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d-----Gt~IrVwdi~ 400 (838)
..|.|.+||..+.+.+..+... .++.++|||||++|+|+... ++.++||+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3588999999988888777643 47899999999999999864 4569999983
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.54 E-value=7e-08 Score=108.98 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
-..+|+..+|+|||++||+.|.||. +||||... ++|.-+.+-. -+...|++|||||+||+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWSPDGKYIV 348 (636)
T ss_pred ccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEcCCccEEE
Confidence 3458999999999999999999886 99999843 2221111110 12489999999999999
Q ss_pred EEeCCCeEEEEecCCCCCccccccCCCCCCCCcccC
Q 003221 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (838)
Q Consensus 448 s~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p 483 (838)
+|+.|.-|.||.+....-...-++|.+.|....+-|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999987665555577876655544433
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.52 E-value=4.5e-06 Score=88.90 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~-~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
..+++++.||+.+.+....| .||...|..|.|+|+- -+||||+.||. |||||+... ...++
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t----------------k~pv~ 252 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT----------------KFPVQ 252 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC----------------Ccccc
Confidence 45789999999987766555 4899999999999984 57899999886 999998531 13566
Q ss_pred EEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCCCCCcc
Q 003221 424 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~~~gg~~ 467 (838)
+|. | +...|+++.|.|- .+.|.++++|..|.+|....-..++
T Consensus 253 el~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 253 ELP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ccC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 664 3 3347999999985 6788999999999999876554433
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=4.6e-06 Score=99.18 Aligned_cols=236 Identities=17% Similarity=0.097 Sum_probs=130.8
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC------eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR------IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~------iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~ 245 (838)
++|.||+..||++++.|.++ .++..+.+.++ .++..+++.|++||-..++++.++...--
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~------------- 103 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP------------- 103 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-------------
Confidence 68999999999999999765 58888888664 23456788999999999998888764211
Q ss_pred ccceeEEcccE-EEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCC
Q 003221 246 GYGPMAVGPRW-LAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (838)
Q Consensus 246 g~g~~Alspr~-LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~g 324 (838)
+.++ ++ +|+....+.+...+ .....+.. .+ .+..++.......|.-....+++...
T Consensus 104 ---v~~~--~~~~~~a~~s~~~~~s~-~~~~~~~~--~s---------------~~~~~q~~~~~~~t~~~~~~d~~~~~ 160 (792)
T KOG1963|consen 104 ---VHAL--VYKPAQADISANVYVSV-EDYSILTT--FS---------------KKLSKQSSRFVLATFDSAKGDFLKEH 160 (792)
T ss_pred ---eeEE--EechhHhCccceeEeec-ccceeeee--cc---------------cccccceeeeEeeeccccchhhhhhh
Confidence 1111 11 22222111100000 00000000 00 00001111110000000000000000
Q ss_pred -CCCCccCCCccccccccccccCCCceEEEEECCCCcEE-E---EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 325 -SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S---QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 325 -s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v-~---~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
-..++..+..+..- ..-.+..+.+|+..++... . .-.-|+.++.+.+|||.|+++|+|..||. |.||+-
T Consensus 161 ~~~~~I~~~~~ge~~-----~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d 234 (792)
T KOG1963|consen 161 QEPKSIVDNNSGEFK-----GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRD 234 (792)
T ss_pred cCCccEEEcCCceEE-----EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEec
Confidence 00111111111100 1123445778888774411 1 11358888999999999999999999998 999975
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
.-. ++. . ..-..|+. |.+.|.+++||+||.+|.+|+..|-.-+|.+++.+.
T Consensus 235 ~~~-----~~~-----~---~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 235 FGS-----SDD-----S---ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred ccc-----ccc-----c---ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCCc
Confidence 310 010 0 11123333 345799999999999999999999999999988763
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=3.8e-06 Score=96.44 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=60.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003221 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (838)
Q Consensus 351 V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t 430 (838)
|.+||+.+++ +..+..|...+...+|+|||+.|+.++..+...+||++... +. ....+ +..
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------~~----------~~~~l--~~~ 334 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------GG----------GASLV--GGR 334 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------CC----------CeEEe--cCC
Confidence 5566776655 45666777788899999999988877754444899987432 10 11111 111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 431 ~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
. .+.+|||||++|+..+.++ +.+|++..
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 1 4578999999999988866 45588754
No 197
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=0.0001 Score=84.28 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=37.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe--CC--eEEEEECCCCce
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL--AT--QIYCFDALTLEN 223 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l--~~--~I~IwD~~t~e~ 223 (838)
..|.+||+.+++......+.+.+.+.+++++ .|++.. ++ .|+++|+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 4699999999987555556666777888875 666544 22 599999998763
No 198
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1e-05 Score=89.18 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=85.4
Q ss_pred cCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 345 MDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~-~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+..-+.|++||...++ ++.+|.--..+|+++...|+|+++.+|...|. +..||+.. | .++.
T Consensus 222 ~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl~g 283 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KLLG 283 (412)
T ss_pred EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------eeec
Confidence 4456789999998754 68899888999999999999999999999887 88999953 2 3444
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
....|.+. .|.+|--.|..++||+++.|.-|+|||+.+.+-.
T Consensus 284 ~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 284 CGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 43456554 5999999999999999999999999999886543
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.46 E-value=3.1e-07 Score=105.08 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=81.4
Q ss_pred cCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccC
Q 003221 345 MDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (838)
Q Consensus 345 g~~~G~V~VwDl~s~-------~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~ 416 (838)
+..+|.|++|-+..+ +.-..+.+|...|.+|.|.|= ..+||+||.|- +|++||+.. +
T Consensus 646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~-------~------- 710 (1012)
T KOG1445|consen 646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS-TIELWDLAN-------A------- 710 (1012)
T ss_pred cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc-eeeeeehhh-------h-------
Confidence 567999999999753 345788899999999999994 67899999955 599999964 2
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccc
Q 003221 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 417 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
....+| .|++. .|.+++|||||+.+|+...||+++||. +..++..++
T Consensus 711 ---~~~~~l-~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~--Prs~e~pv~ 757 (1012)
T KOG1445|consen 711 ---KLYSRL-VGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYE--PRSREQPVY 757 (1012)
T ss_pred ---hhhhee-ccCcC-ceeEEEECCCCcceeeeecCceEEEeC--CCCCCCccc
Confidence 122344 46554 699999999999999999999999987 444444443
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.6e-05 Score=95.91 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=75.4
Q ss_pred CCCceEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 346 DNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 346 ~~~G~V~VwDl~s~---~~v~~~~aH~sp--IsaLaFSPdGtl-LATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
-.||.|++||.... ..+...+.|+.+ |..+.|.+.|-- |++||.+|. |++||+.-... ....
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~-----------e~~~ 1295 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSK-----------ETFL 1295 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcc-----------cccc
Confidence 35899999998753 357888999987 999999998876 999999886 99999964210 0001
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
...+....|. ..+++.-+++...||+||. +.+.||++.
T Consensus 1296 ~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1296 TIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred eeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 1222222342 3788999999999999999 899999985
No 201
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.9e-05 Score=84.92 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=81.3
Q ss_pred ccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECCC--CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 344 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~----~~v~~~~aH~spIsaLaFSPd--GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
+++.|++|+|||+.+. .+-...++|.+.|..+.+-+- |+.+||+|.|++ ++||.-.+. .-...| .
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~-~~~~~~-------~ 100 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEK-SEEAHG-------R 100 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccc-cccccc-------c
Confidence 5788999999998653 367889999999999999875 999999999776 999986431 000011 0
Q ss_pred cceEEEEEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEecCCCC
Q 003221 418 SHVHLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a~I~sIaFSpD--g~~Las~S~dGTVhIw~l~~~g 464 (838)
...+..+|. ..+..|++|.|.|- |-.||+++.||+++||......
T Consensus 101 ~Wv~~ttl~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 101 RWVRRTTLV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred eeEEEEEee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 112333442 12346999999986 8899999999999999875443
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=2.8e-05 Score=89.38 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=59.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.+||+.+++. ..+..|.......+|+|||+.||.++..+. .|.++|+.. + ....+.
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRIS 330 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEee
Confidence 4588889887764 556666666778999999999998885432 466666532 2 222332
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---eEEEEec
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVL 460 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dG---TVhIw~l 460 (838)
.+ ...+...+|||||++|+..+.++ .+.+|++
T Consensus 331 ~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 331 FG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred cC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 22 12356788999999999887543 3555554
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.43 E-value=3.5e-06 Score=97.17 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=107.6
Q ss_pred cEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCC
Q 003221 194 SVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (838)
Q Consensus 194 ~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~ 271 (838)
.|++|+|-|+ .|+++.++++++||..+|..+++|..|... + ..+||+-+...
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dGkr------ 67 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDGKR------ 67 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCCce------
Confidence 7889999887 788888899999999999999999988663 1 23466543211
Q ss_pred CCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceE
Q 003221 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (838)
Q Consensus 272 vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V 351 (838)
+++|..|.+|
T Consensus 68 ----------------------------------------------------------------------FASG~aDK~V 77 (1081)
T KOG1538|consen 68 ----------------------------------------------------------------------FASGSADKSV 77 (1081)
T ss_pred ----------------------------------------------------------------------eccCCCceeE
Confidence 1134567889
Q ss_pred EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003221 352 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (838)
Q Consensus 352 ~VwDl~s~~~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t 430 (838)
.||.-. .-..++ .|+..|.||.|+|-...|||+|-.+ +-+|.... +-+.+. + .
T Consensus 78 I~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~-k--s 131 (1081)
T KOG1538|consen 78 IIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKH-K--S 131 (1081)
T ss_pred EEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhh-h--h
Confidence 999653 333444 6999999999999999999999843 67887642 111121 1 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 431 ~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
.+.|.+++|..||++|+.|-.+|||.|=+
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 35799999999999999999999999864
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=6.3e-07 Score=102.06 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=83.3
Q ss_pred ccCCCceEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 344 DMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s--------~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
+++.+|.+.+|.+.. -+.+.+|+||.+||.|++..+.|..+.||+.||+ |+.|++-++.... .+++.
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~dp~----ds~dp 385 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQDPD----DSYDP 385 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCCcc----cccCc
Confidence 578899999999932 2468899999999999999999999999999887 9999984321100 00111
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 416 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
. ...-.| -|++.+ ||.+++|....+|+++|.||||++|...
T Consensus 386 ~---vl~~~l-~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 386 S---VLSGTL-LGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred c---hhccce-eccccc-eeeeeecccccceeeecCCceEEeeccC
Confidence 0 122223 477665 9999999999999999999999999864
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.42 E-value=5.9e-06 Score=93.65 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=133.4
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.-.|+++..+| |-|.+- .+.+...++.|.|.|.+-++.|++. -|| .+ |+
T Consensus 75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGt------------gLl-t~-GE-------------- 124 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGA------------GLL-TA-GE-------------- 124 (737)
T ss_pred cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCc------------eee-ee-cC--------------
Confidence 34677777666 888764 5788889999999999999998752 133 22 21
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEeec
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTY 230 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL-~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t~ 230 (838)
++.|++|+ ++|-.-.++ ++..+|+++++.|+ -++.|..++++|=-+.-.....
T Consensus 125 ------------------DG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i----- 180 (737)
T KOG1524|consen 125 ------------------DGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII----- 180 (737)
T ss_pred ------------------CceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee-----
Confidence 37899998 466544444 57889999999875 6677777777653332111111
Q ss_pred CCcccCCCCccccccccceeEEcccEEEEeCCCc-eeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTL-LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 231 p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~-~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
+|=|..+--. .-|+.
T Consensus 181 ------------------------~WkAHDGiiL~~~W~~---------------------------------------- 196 (737)
T KOG1524|consen 181 ------------------------RWRAHDGLVLSLSWST---------------------------------------- 196 (737)
T ss_pred ------------------------EEeccCcEEEEeecCc----------------------------------------
Confidence 2222211000 00110
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~ 389 (838)
. ... + ++|..|-..+|||.. |+.+-+-.+|..||++++|+|+ ++.|.+|-
T Consensus 197 ----------------------~--s~l--I--~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 197 ----------------------Q--SNI--I--ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred ----------------------c--ccc--e--eecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee
Confidence 0 000 0 135678889999986 5566677899999999999999 77877775
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE-EEEecC
Q 003221 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLS 461 (838)
Q Consensus 390 dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTV-hIw~l~ 461 (838)
++.| |.- | ....|..++||+||..++.|+..|.+ |-+.|+
T Consensus 247 --nt~R-~~~-p----------------------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 247 --NTAR-FSS-P----------------------------RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred --eeee-ecC-C----------------------------CccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 2244 111 1 11359999999999999999999964 334443
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=3.3e-06 Score=92.17 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=61.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
++| .||++|++++||+.|+|||-++..|+|||... |. ...+.. +|. ..+.-+.||||+.+
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~~--~gl--gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLIP--KGL--GGFSLLKWSPDGDV 252 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------cccccc--cCC--CceeeEEEcCCCCE
Confidence 345 69999999999999999999999999999854 21 123332 332 25888999999999
Q ss_pred EEEEeCCCeEEEEecCC
Q 003221 446 IAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 446 Las~S~dGTVhIw~l~~ 462 (838)
|.+++-|++.+||..+.
T Consensus 253 lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQ 269 (445)
T ss_pred EEEecccceeeeehhcc
Confidence 99999999999997643
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=4.3e-05 Score=87.91 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=61.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
.|.+||+.+++. ..+..+...+...+|+|||+.|+.++.++...+||.+... .| ...++...
T Consensus 268 ~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~- 329 (429)
T PRK03629 268 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE- 329 (429)
T ss_pred EEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence 588999988765 4454555677889999999999888876545677765321 12 11222211
Q ss_pred ccccEEEEEEccCCCEEEEEeCC-C--eEEEEecCC
Q 003221 430 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 462 (838)
Q Consensus 430 t~a~I~sIaFSpDg~~Las~S~d-G--TVhIw~l~~ 462 (838)
.....+.+|||||++|+..+.+ + .+.+|++..
T Consensus 330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 1235678999999999887654 3 355666643
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.3e-06 Score=96.83 Aligned_cols=129 Identities=17% Similarity=0.250 Sum_probs=87.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcc--cCC--CCC---Ccc---
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RSG--SGN---HKY--- 413 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~--~~~--~G~---~~~--- 413 (838)
++..||.++||+..+...+..+.+|...|..|.|||||++|||-+.+ ..+||++.+... ..+ +.. ..+
T Consensus 161 tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~ 238 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCRFS 238 (398)
T ss_pred eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCCcccchhhhhceec
Confidence 46789999999999998899999999999999999999999999986 589999976410 000 000 000
Q ss_pred -ccCCcc------------eEEEE--Eecc---------cc-cccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcc-
Q 003221 414 -DWNSSH------------VHLYK--LHRG---------IT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS- 467 (838)
Q Consensus 414 -~~~~~~------------~~l~~--L~RG---------~t-~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~- 467 (838)
+-.+.. ..+++ +.++ .. ...|.+++-|+||+++|.|+.+|-|-|++........
T Consensus 239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 000000 00111 1111 00 1259999999999999999999999999987654322
Q ss_pred ccccCCC
Q 003221 468 GFQTLSS 474 (838)
Q Consensus 468 ~~~~H~~ 474 (838)
.-+.|..
T Consensus 319 vk~aH~~ 325 (398)
T KOG0771|consen 319 VKEAHLG 325 (398)
T ss_pred ehhhhee
Confidence 2255643
No 209
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.35 E-value=0.00014 Score=82.27 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=56.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.|.++|+.+++. ..+..+...+...+|+|+|++|+.++.++. .|.+||+.. + ....+..
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD 363 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence 577788876653 344445566778899999999999887542 366666632 2 1222222
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhI 457 (838)
+ ......+|+|||++|+..+.++....
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcEE
Confidence 1 12345689999999999888765433
No 210
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.35 E-value=0.001 Score=74.75 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=68.3
Q ss_pred CCceEEEEECCCC-----cEEEEeccC-------CCCeEEEEECCCCCEEEEEec---------CCCEEEEEecCCCccc
Q 003221 347 NAGIVVVKDFVTR-----AIISQFKAH-------TSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMR 405 (838)
Q Consensus 347 ~~G~V~VwDl~s~-----~~v~~~~aH-------~spIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~ 405 (838)
+.|+|.+.|+... +.+..+... -.-+.-++|+|+|++|..+.. -|+.|.|+|+.+
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---- 288 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---- 288 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC----
Confidence 4499999996443 333333211 122234999999998888542 125688999854
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEecCCCCCc
Q 003221 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFGGD 466 (838)
Q Consensus 406 ~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~Las~S-~dGTVhIw~l~~~gg~ 466 (838)
+ +.+.++.-|. .+..|+||||++ +|.+.. .+++|+|+|+...+..
T Consensus 289 ---~----------kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 289 ---G----------KRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred ---C----------eEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 2 4666665553 689999999999 887776 6789999998776543
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=3.6e-05 Score=88.50 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=61.2
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++..+....||.+... .|. .+.+ .+ .|
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-----~g~--------~~~l-t~-~g 335 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-----GGS--------AERL-TF-QG 335 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CCC--------eEEe-ec-CC
Confidence 4699999988764 5566666666778999999999988764433455544211 020 1111 22 22
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dG---TVhIw~l~~ 462 (838)
......+|||||++|+..+.++ .|.+|++..
T Consensus 336 ---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 336 ---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred ---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 1244689999999999876543 477888754
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=0.0002 Score=75.08 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEe---CCCeEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCcccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~---s~~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
++.+.-||+.+|+...+++-+ ..|.+|.. ++++|..+-++.+++||.+|.++..++..+.+|.+.+...+ --.
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g---~wi 211 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG---KWI 211 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC---cee
Confidence 478999999999999999865 57888877 34577778888999999999999999988777644331110 012
Q ss_pred ceeEEcccEEEEe
Q 003221 248 GPMAVGPRWLAYA 260 (838)
Q Consensus 248 g~~Alspr~LAys 260 (838)
+.+|.+..||...
T Consensus 212 gala~~edWlvCG 224 (325)
T KOG0649|consen 212 GALAVNEDWLVCG 224 (325)
T ss_pred EEEeccCceEEec
Confidence 4444444555544
No 213
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.35 E-value=1.6e-05 Score=84.91 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=81.0
Q ss_pred cCCCceEEEEECCCCcEEEEec---cCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 345 MDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~---aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
.+.||.|++||+...+--..+. ....|+..|+++++ =.+|||-..+...|.|-|+.-. + .
T Consensus 215 vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------~----------t 278 (364)
T KOG0290|consen 215 VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------C----------T 278 (364)
T ss_pred ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------C----------c
Confidence 3568999999999876544443 22568999999984 6799998888888999999642 1 3
Q ss_pred EEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~gg 465 (838)
.+.+|++ |.+.|..|+|.|.+ ..|+++++|..+-||+|.....
T Consensus 279 pva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 279 PVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 5667753 56789999999975 5899999999999999987654
No 214
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=0.00089 Score=73.76 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=70.0
Q ss_pred CceEEEEECCCC-cEEEEeccC---------CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 348 AGIVVVKDFVTR-AIISQFKAH---------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 348 ~G~V~VwDl~s~-~~v~~~~aH---------~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
+++|.||+.... ..+..++.| ....++|..+|||++|..+...-..|-+|.+.+. +|
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-----~g-------- 278 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-----GG-------- 278 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-----CC--------
Confidence 456777776652 222222221 3467899999999999987764456999999764 12
Q ss_pred cceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCC-eEEEEecCCCCCccc
Q 003221 418 SHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFGGDSG 468 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a-~I~sIaFSpDg~~Las~S~dG-TVhIw~l~~~gg~~~ 468 (838)
+|--+.+-.+.+ .-.+..|++++++|+++..++ +++||.+++..|...
T Consensus 279 ---~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 279 ---KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ---EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 232222211222 257899999999999988774 799999998776544
No 215
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00043 Score=80.27 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=53.4
Q ss_pred eEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 350 IVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 350 ~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
.|.++|+.+++... ++.++ .....+|+|||++|+..+.++...+||-+... +| .+..+..+
T Consensus 331 ~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~-----~g-----------~~~~lt~~ 392 (448)
T PRK04792 331 QIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLE-----TG-----------AMQVLTST 392 (448)
T ss_pred eEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECC-----CC-----------CeEEccCC
Confidence 57777877665432 22332 23456899999999988775554566544221 12 12223222
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCCC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFG 464 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dG-TVhIw~l~~~g 464 (838)
. ...+.+|+|||++|+..+.++ .-.||-++..|
T Consensus 393 ~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 393 R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred C---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1 122458999999998877654 33344443333
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=5.8e-05 Score=86.71 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=60.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
.|.++|+.++. ...+..|.......+|+|||+.|+..+..+....||.+... .+ ..+.+ .+ .|.
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l-t~-~g~ 328 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV-TF-TGS 328 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-ec-CCC
Confidence 35556665544 45565566556778999999999987765545788876321 01 01122 22 221
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 003221 430 TSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (838)
Q Consensus 430 t~a~I~sIaFSpDg~~Las~S~dG---TVhIw~l~~ 462 (838)
.....+|||||++|+..+.++ .|.+|++..
T Consensus 329 ---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 329 ---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred ---CcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 234678999999999888765 588888765
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.27 E-value=7e-06 Score=93.27 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=58.9
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 327 s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
..+.++++++.++. .++||.++|+|+.+.+++..++---+.+.|++|||||++|||+++|+ .+.||...
T Consensus 294 n~f~FS~DG~~LA~----VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~ 362 (636)
T KOG2394|consen 294 NEFAFSPDGKYLAT----VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFE 362 (636)
T ss_pred cceeEcCCCceEEE----EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEec
Confidence 44555566777764 47899999999999998888888888999999999999999999966 69999984
No 218
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.26 E-value=3.7e-06 Score=92.56 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=87.8
Q ss_pred ccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 344 DMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~-------~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
+++.|.+|.||++..+ +.+..|.+|+..|.-+++.|. -..|+||+. +.+|.||++.+ |
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~t-------g------ 164 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGT-------G------ 164 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccC-------C------
Confidence 6788999999999753 357889999999999999997 568889988 56699999965 4
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 416 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
.-+.+|. |...|++++|+.||..|++++.|..|+||+.........-.+|.
T Consensus 165 ----eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 165 ----EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred ----ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 4566664 56789999999999999999999999999976543333334553
No 219
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=2e-06 Score=64.60 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=35.2
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 003221 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (838)
Q Consensus 360 ~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (838)
+++.+|++|.++|.+|+|+|++.+|||++.|++ |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 578899999999999999999999999999765 99997
No 220
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00069 Score=78.16 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=55.7
Q ss_pred EEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 351 VVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 351 V~VwDl~s-~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
|.++++.. +.....+..+...+...+|||||++||..+.++ ..|.+||+.. | ....+..
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~ 368 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTT 368 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccC
Confidence 44444432 223344555556777899999999999776542 3588888853 2 2233333
Q ss_pred ccccccEEEEEEccCCCEEEEEeC-CCe--EEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSS-KGT--CHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~-dGT--VhIw~l~ 461 (838)
+ ...+.+..|+|||++|+..+. ++. +.++++.
T Consensus 369 ~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 369 S--PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred C--CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 2 124678999999999886544 344 4455554
No 221
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.16 E-value=0.00027 Score=79.94 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=61.3
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCE--EEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~--IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.++.. |.++|+.. + ....+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence 4588889887653 4555555556678999999999887765433 44455421 2 122332
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dG---TVhIw~l~~ 462 (838)
.+ ...+..++|||||++|+.++.++ .|.+|++..
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 11 12466789999999999998876 677777654
No 222
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=9e-05 Score=77.68 Aligned_cols=97 Identities=13% Similarity=0.258 Sum_probs=71.8
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaF-SPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
..||.+.-||+++++....+++|+..|-+++- +.+|+ +.|+++||+ +||||+.+. +++..
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~-----------------k~v~~ 193 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQ-----------------KHVSM 193 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEecccc-----------------ceeEE
Confidence 36899999999999999999999999999998 66665 669999997 999999752 22222
Q ss_pred --------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 425 --------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 425 --------L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+.|-+-...|-+++ -|..||+.|+.. .+.+|.|....
T Consensus 194 ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp-~lslwhLrsse 238 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP-KLSLWHLRSSE 238 (325)
T ss_pred eccccChhhcCcccCceeEEEe--ccCceEEecCCC-ceeEEeccCCC
Confidence 22322223455555 456799888766 48899987644
No 223
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.0003 Score=81.48 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=61.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-cc
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RG 428 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG 428 (838)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... +| ...++. .|
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g-----------~~~~Lt~~g 349 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SG-----------KVSRLTFEG 349 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CEEEEecCC
Confidence 588889887754 4555566666788999999999887765433555544221 12 122221 22
Q ss_pred cccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~d-GTVhIw~l~~~gg 465 (838)
. .....+|||||++|+..+.+ +..+||.++..++
T Consensus 350 ~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 350 E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 23457899999999887664 5677776665444
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.07 E-value=3.9e-05 Score=81.17 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=51.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
++.-||.|+||...+.+.++.++-|...|++|+|+|+-.++|.||.|++ |-+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 4567999999999999999999999999999999999999999999765 999986
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.01 E-value=1.8e-06 Score=101.73 Aligned_cols=94 Identities=24% Similarity=0.410 Sum_probs=80.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
++..|.-|+||...+..+++..++|.+.|+.++.+...+++|+||- +.+||||.+.. | ..+
T Consensus 207 tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~pv- 267 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------APV- 267 (1113)
T ss_pred ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------chH-
Confidence 4678889999999999999999999999999999999999999998 67899999953 3 233
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+.||++.+ |++|+|||- ++++.|||+.+|+-.
T Consensus 268 svLrghtga-vtaiafsP~----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 268 SVLRGHTGA-VTAIAFSPR----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHhccccc-eeeeccCcc----ccCCCCCceEecccc
Confidence 334787765 999999994 489999999999865
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.99 E-value=0.00033 Score=81.44 Aligned_cols=253 Identities=15% Similarity=0.133 Sum_probs=146.4
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
+.-|+++.++.+-|||+++ |...+.+.+|...|.+|++..++ + +.|. |
T Consensus 24 GsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~dG-----------k--rFAS--G---------------- 71 (1081)
T KOG1538|consen 24 GTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDG-----------K--RFAS--G---------------- 71 (1081)
T ss_pred CceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccCC-----------c--eecc--C----------------
Confidence 5677788889999999965 66888999999999999998542 2 3332 1
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCC--CeEEEEeCCeEEEEECCCCceeeEEeecCC
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~--~iLaV~l~~~I~IwD~~t~e~l~tL~t~p~ 232 (838)
+ +++.|.+|+-+ .+-+-.+.+...|.++.||| ..|+.|.-...-+|.+..-.. .-+..
T Consensus 72 -----~----------aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V----~K~ks 131 (1081)
T KOG1538|consen 72 -----S----------ADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV----SKHKS 131 (1081)
T ss_pred -----C----------CceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH----Hhhhh
Confidence 1 24789999974 33344556678999999998 477777766677887654211 11111
Q ss_pred cccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccc
Q 003221 233 PQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ 310 (838)
. . ....+++.. .+||..-.. |.++...-. +-- .+
T Consensus 132 s-------~----R~~~CsWtnDGqylalG~~n------GTIsiRNk~---------------------gEe----k~-- 167 (1081)
T KOG1538|consen 132 S-------S----RIICCSWTNDGQYLALGMFN------GTISIRNKN---------------------GEE----KV-- 167 (1081)
T ss_pred h-------e----eEEEeeecCCCcEEEEeccC------ceEEeecCC---------------------CCc----ce--
Confidence 0 0 012233322 444433110 111100000 000 00
Q ss_pred ccccccccccCCCCCCCC-----ccCCCccccccccccccCCCceEEEEECC--------CCcEEEEeccCCCCeEEEEE
Q 003221 311 KTLSKYCQELLPDGSSSP-----VSPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCF 377 (838)
Q Consensus 311 ktls~y~~~~~p~gs~s~-----~s~n~~~k~~~~~~~~g~~~G~V~VwDl~--------s~~~v~~~~aH~spIsaLaF 377 (838)
.-..|+|.+++ ++++++ ...+..+-|.|.. +|+.+..-++-...--|+.+
T Consensus 168 -------~I~Rpgg~Nspiwsi~~~p~sg----------~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 168 -------KIERPGGSNSPIWSICWNPSSG----------EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred -------EEeCCCCCCCCceEEEecCCCC----------CCccceEEEEeccceeEEEEecceeecccccCCCCchhhee
Confidence 00012222211 111110 1122334444432 23333222222333457888
Q ss_pred CCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003221 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (838)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhI 457 (838)
-|+|.++..++.++. +++|--. | ..+-++ |.....||.++..|+|+++++|..|||+--
T Consensus 231 f~NGEy~LiGGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred ccCCcEEEEccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 899999999999765 8888532 4 455554 334457999999999999999999999999
Q ss_pred EecC
Q 003221 458 FVLS 461 (838)
Q Consensus 458 w~l~ 461 (838)
|+|-
T Consensus 290 yNl~ 293 (1081)
T KOG1538|consen 290 YNLI 293 (1081)
T ss_pred hhhH
Confidence 9874
No 227
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.99 E-value=8.7e-05 Score=84.49 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=65.2
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
|.+.|.-+.....+-..+||++-|.++.|++...+++||++| -.++|||.. | +.||.-.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED-~kfKvWD~~--------G----------~~Lf~S~-- 224 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGED-FRFKIWDAQ--------G----------ANLFTSA-- 224 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCc-eeEEeeccc--------C----------cccccCC--
Confidence 456666666666677899999999999999999999999995 459999974 4 3555432
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEE
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCH 456 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVh 456 (838)
.+...|++++|.|| +..+.+|.. |.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-TAR 250 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-eee
Confidence 23447999999999 666777654 555
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.0008 Score=74.34 Aligned_cols=237 Identities=15% Similarity=0.135 Sum_probs=121.5
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEEEEEeCC--CeEEEE-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~---s~V~sV~~s~--~iLaV~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
.+|.+-|+.+.+.+...... +.||.+..+| ++|++. .++.|-+||.+.-+..-.+....+. +. .
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~--------~~--~ 196 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS--------GK--N 196 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC--------Cc--c
Confidence 68999999999988877654 5999999987 356554 4668999999876532222221110 00 0
Q ss_pred cceeEEcc---cEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccC
Q 003221 247 YGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (838)
Q Consensus 247 ~g~~Alsp---r~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~ 321 (838)
+....+.| ++|+.... .+-+|+.- . ++. .+ +..|..+.|..--.+-.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R-~-~~~----------------~~----------~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRR-M-QAR----------------PV----------YQRSMFKGLPQENTEWM 248 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeec-c-ccc----------------hH----------HhhhccccCcccchhhh
Confidence 22233333 77776654 34455531 1 000 00 00000000100000000
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE-EEEecc------CCCCeEEEEECCCCCEEEEEecCCCEE
Q 003221 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKA------HTSPISALCFDPSGTLLVTASVYGNNI 394 (838)
Q Consensus 322 p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~-v~~~~a------H~spIsaLaFSPdGtlLATAS~dGt~I 394 (838)
.+.++++. ...++ -..----.+||+.+.++ +-++.. ....|.+++|--|-+ +||+|. .-.|
T Consensus 249 ----~~~~~~~G-~Q~ms-----iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-~~~i 316 (609)
T KOG4227|consen 249 ----GSLWSPSG-NQFMS-----IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-HWGI 316 (609)
T ss_pred ----heeeCCCC-Ceehh-----hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-ccce
Confidence 01111110 00000 00111235678877543 223321 123577899987765 889987 4569
Q ss_pred EEEecCCCcccCC---CCCCccccCCc--ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 395 NIFRIMPSCMRSG---SGNHKYDWNSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 395 rVwdi~p~~~~~~---~G~~~~~~~~~--~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.+|.+-......+ -|...-.+.+. ...-+...||+ +..+..+.|+|-...|++++-...++||.-
T Consensus 317 ~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 317 HIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEEecCCCccccCccccCcchhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccc
Confidence 9999932211111 01000000000 01122334674 457888999999999999999999999974
No 229
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.97 E-value=0.00024 Score=83.96 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=70.2
Q ss_pred cCCCceEEEEECCCC--------cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccC
Q 003221 345 MDNAGIVVVKDFVTR--------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (838)
Q Consensus 345 g~~~G~V~VwDl~s~--------~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~ 416 (838)
|...|.|..=+-... +...++..|.++|.++.++|=+..+.+++-|. .+|||.....
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~-------------- 430 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVI-------------- 430 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCC--------------
Confidence 556777766333221 23457778999999999999888777766645 5999987421
Q ss_pred CcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCC
Q 003221 417 SSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 417 ~~~~~l~~L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~ 462 (838)
...++.+.+. ...|++++|||-- ..+|++..||+++||||..
T Consensus 431 --~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 431 --ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred --CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 1245555442 2359999999974 4678888899999999965
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0011 Score=75.93 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=57.4
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.+||+.+++. ..+..+........|+|||+.|+..+..+. .|.++++.. |. .+.+ .+
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g~--------~~~l-t~- 328 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------GR--------AERV-TF- 328 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------EEEe-ec-
Confidence 3588889987764 445556556677899999998887775443 344455532 21 1122 11
Q ss_pred cccccccEEEEEEccCCCEEEEEeCC-Ce--EEEEecCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSK-GT--CHVFVLSP 462 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~d-GT--VhIw~l~~ 462 (838)
.|. .....+|||||++|+..+.+ +. +.+|++..
T Consensus 329 ~~~---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 329 VGN---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCC---CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 121 23457899999999988754 33 55566543
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.95 E-value=0.0033 Score=71.28 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=109.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE-EEEeCC--CeEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~-sV~~s~--~iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
+.|.|.|..+++.+.++.....+. .+.+++ +++.| +.++.|.++|+.+++.+.++.....| .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------~ 81 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------R 81 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------c
Confidence 689999999999999998766654 466776 45554 44678999999999988887653222 1
Q ss_pred eeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCC
Q 003221 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (838)
Q Consensus 249 ~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~ 326 (838)
-+++++ |||+-+
T Consensus 82 ~i~~s~DG~~~~v~------------------------------------------------------------------ 95 (369)
T PF02239_consen 82 GIAVSPDGKYVYVA------------------------------------------------------------------ 95 (369)
T ss_dssp EEEE--TTTEEEEE------------------------------------------------------------------
T ss_pred eEEEcCCCCEEEEE------------------------------------------------------------------
Confidence 133322 222111
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 327 s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH-------~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
...++.|.|+|..+.+.+.++... .+.+.++..+|....++.+-.+...|-+-|.
T Consensus 96 ------------------n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 96 ------------------NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp ------------------EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred ------------------ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 112568999999999999888754 3467899999999977777776555656565
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-EeCCCeEEEEecCCCCC
Q 003221 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las-~S~dGTVhIw~l~~~gg 465 (838)
... .......+..|. ...+..|+||++++.+ ...++.+-+++....+.
T Consensus 158 ~d~---------------~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 158 SDP---------------KNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp TTS---------------SCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred ccc---------------cccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceE
Confidence 321 002223333332 4678999999998755 45667888999876543
No 232
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0093 Score=68.79 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=37.2
Q ss_pred EEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeC----CeEEEEECCCCc
Q 003221 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLA----TQIYCFDALTLE 222 (838)
Q Consensus 174 tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~----~~I~IwD~~t~e 222 (838)
.|.++|+.+|+......+.+.+...+++++ .|++... .+|+++|+.+++
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 689999999987666667777777788876 5655443 469999998775
No 233
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.92 E-value=0.00069 Score=73.59 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=46.3
Q ss_pred ccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 344 DMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s-~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+|+++|.|++||++. +..+..+..|..-++.++|+|-=.+|||+| |+ |+|-..
T Consensus 314 sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss--Gq--r~f~~~ 367 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS--GQ--RIFKYP 367 (406)
T ss_pred ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc--Cc--eeecCC
Confidence 578999999999998 566889999999999999999999999998 55 678663
No 234
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=7.1e-05 Score=85.75 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=50.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+..+++|+++|..+++.+....+|...+++++|.|+|-+|++++.||. +++|.+.
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence 456899999999999999999999999999999999999999999776 9999884
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.89 E-value=3.4e-05 Score=86.59 Aligned_cols=270 Identities=20% Similarity=0.229 Sum_probs=159.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
.++-|++|...| +-.+|.- +..+.--+.-. ..|+.++|+-+ ..++|| + |
T Consensus 140 nGrhlllgGrKGHlAa~Dw~-t~~L~~Ei~v~-Etv~Dv~~LHn-------------eq~~AV-A----------Q---- 189 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWV-TKKLHFEINVM-ETVRDVTFLHN-------------EQFFAV-A----------Q---- 189 (545)
T ss_pred CccEEEecCCccceeeeecc-cceeeeeeehh-hhhhhhhhhcc-------------hHHHHh-h----------h----
Confidence 355566666666 8888884 34443222222 34777887733 335665 2 1
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
.+-+.|||- .|.++|.|+-...|..+.|-|. +||.+. .+.++--|+.+|+..-.+.+
T Consensus 190 -------------------K~y~yvYD~-~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t 249 (545)
T KOG1272|consen 190 -------------------KKYVYVYDN-NGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT 249 (545)
T ss_pred -------------------hceEEEecC-CCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc
Confidence 256889985 6888999999999999999986 344333 45688889999987665544
Q ss_pred cCCcccCCCCccccccccceeEEcc-cE---EEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGP-RW---LAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alsp-r~---LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
-.-+ ...|+-.| .- |--+...+.+|+- +..... ..+
T Consensus 250 ~~G~-------------~~vm~qNP~NaVih~GhsnGtVSlWSP-------------------~skePL--------vKi 289 (545)
T KOG1272|consen 250 GAGR-------------TDVMKQNPYNAVIHLGHSNGTVSLWSP-------------------NSKEPL--------VKI 289 (545)
T ss_pred cCCc-------------cchhhcCCccceEEEcCCCceEEecCC-------------------CCcchH--------HHH
Confidence 2111 11122222 11 1111223344541 100000 000
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLA 385 (838)
++.-+.++.+..++.+.+++. ..-|..|+|||+.....+.++.. ..+.+.|+||..|. ||
T Consensus 290 --------------LcH~g~V~siAv~~~G~YMaT----tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA 349 (545)
T KOG1272|consen 290 --------------LCHRGPVSSIAVDRGGRYMAT----TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA 349 (545)
T ss_pred --------------HhcCCCcceEEECCCCcEEee----cccccceeEeeeccccccceeec-CCCccccccccccc-ee
Confidence 111223344555555666653 45688999999998765555544 46889999999883 33
Q ss_pred EEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 386 TAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+|. |..+.||.=.-. ++| .....|--++ ....|.++.|.|-...|.+|-..|-.-| |-|..|
T Consensus 350 -~~~-G~~v~iw~d~~~----~s~--------~~~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsG 411 (545)
T KOG1272|consen 350 -LSY-GDHVQIWKDALK----GSG--------HGETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSG 411 (545)
T ss_pred -eec-CCeeeeehhhhc----CCC--------CCCcchhhhc--cCcccccceeccHHHeeeccccCCceeE--eccCCC
Confidence 455 778999964321 111 1122232222 2347999999999999999999997666 557778
Q ss_pred cccccc
Q 003221 466 DSGFQT 471 (838)
Q Consensus 466 ~~~~~~ 471 (838)
++++.+
T Consensus 412 ePN~Ds 417 (545)
T KOG1272|consen 412 EPNYDS 417 (545)
T ss_pred CCCcch
Confidence 777643
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0005 Score=76.17 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=63.0
Q ss_pred cCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~-~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+...|.+..+|+..++.+.. |++-++.|++|..+|.+.+||+|+. ++.+||||+.+. .+++
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~ktr-----------------kll~ 326 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKTR-----------------KLLH 326 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeecccc-----------------hhhh
Confidence 45678899999999988766 8899999999999999999999999 678999999652 3455
Q ss_pred EEecccccccEEEEEEccCCCE
Q 003221 424 KLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
+..-+ +.+++|.|.++-.+
T Consensus 327 kvYvK---s~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 327 KVYVK---SRLTFILLRDDVNI 345 (412)
T ss_pred hhhhh---ccccEEEecCCccc
Confidence 44322 34777888776544
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.88 E-value=0.00015 Score=82.17 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=76.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.+| .|.++|+.. + +.+.++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence 3578999999999999999987665556688999999999999877 599999964 2 467777
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCCCccccc
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~gg~~~~~ 470 (838)
+-|. .-.++++|+||++|+++. ..+++.|+|.++.+....+.
T Consensus 75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 7664 357899999999998775 68999999988765544443
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.87 E-value=0.0002 Score=86.94 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=75.1
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE-E
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY-K 424 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~-~ 424 (838)
..-|.|.+|+....+....+.+|.+.|.++.|+-||+++||+|+ ++.||+|++.+. ..+- .
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~-----------------~~~~~~ 213 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSR-----------------EVLGCT 213 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec-Ccceeeeecccc-----------------cccCcc
Confidence 34578999999854444468999999999999999999999999 677999999652 1111 1
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
. -| |.|.|+.++|.|. .|++++.|-|+++|..+
T Consensus 214 ~-fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 214 G-FG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred c-cc-ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 1 23 5678999999998 89999999999999543
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=3e-05 Score=88.27 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=84.0
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
-+.+.+|++=|+||.|+.+|.+||+||. ++.+.|||... .++++..+.|++ +.|.|+.|=|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSD-D~r~ivWd~~~-----------------~KllhsI~TgHt-aNIFsvKFvP 103 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSD-DTRLIVWDPFE-----------------YKLLHSISTGHT-ANIFSVKFVP 103 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCC-cceEEeecchh-----------------cceeeeeecccc-cceeEEeeec
Confidence 4678999999999999999999999998 45689999742 256777777854 6899999988
Q ss_pred C--CCEEEEEeCCCeEEEEecCCCCCc---c-------ccccCCCCCCCCcccCccCCCcccCCCC
Q 003221 442 Y--SQWIAIVSSKGTCHVFVLSPFGGD---S-------GFQTLSSQGGDPYLFPVLSLPWWCTSSG 495 (838)
Q Consensus 442 D--g~~Las~S~dGTVhIw~l~~~gg~---~-------~~~~H~~~~~~~~~~p~~~lp~~~~s~~ 495 (838)
. .+.|++|..|..||||+++..++. . -..-|...++.....|...-..|..+|.
T Consensus 104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED 169 (758)
T KOG1310|consen 104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED 169 (758)
T ss_pred cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC
Confidence 5 678999999999999999863221 1 1234554555544444433334566663
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.79 E-value=0.00073 Score=82.23 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=81.0
Q ss_pred cCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 345 MDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.+.|..+++|++.+.+... +.-+|+..|..++|.|+ +|+|+++| -+.|+|+.. | ..+.
T Consensus 193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged-ctcrvW~~~--------~----------~~l~ 251 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED-CTCRVWGVN--------G----------TQLE 251 (967)
T ss_pred EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc-eEEEEEecc--------c----------ceeh
Confidence 3567889999999988765 77789999999999999 99999995 569999774 3 1222
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccc
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~ 468 (838)
++ +++-...|+.++-.++.-++.++++|+++++|++...+.+..
T Consensus 252 ~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 252 VY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred hh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 22 232233599999999999999999999999999987665443
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.71 E-value=0.0028 Score=73.12 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=46.7
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
.....+|||||+.||..+..+...+||.+... ..+ .....+..+ ...+.+.+|||||++|+..+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence 34567999999998887754333567754211 001 112222221 12467889999999999876
Q ss_pred CCC---eEEEEecCC
Q 003221 451 SKG---TCHVFVLSP 462 (838)
Q Consensus 451 ~dG---TVhIw~l~~ 462 (838)
.++ .+++|++..
T Consensus 346 ~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 346 VIKGVRQICVYDLAT 360 (428)
T ss_pred cCCCCcEEEEEECCC
Confidence 642 477777754
No 242
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.71 E-value=0.0056 Score=75.93 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCC---CCEEEEEec-CCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 346 DNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS---GTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~-aH~spIsaLaFSPd---GtlLATAS~-dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
...|.+.+||+.=+..+.... +|..+|..|+..|- ....++++. --+-+-+|++....
T Consensus 1214 ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~----------------- 1276 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL----------------- 1276 (1431)
T ss_pred cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-----------------
Confidence 456889999998877766554 45588988887774 246666665 33458999986521
Q ss_pred EEEEEecc---------------cccc--cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 421 HLYKLHRG---------------ITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 421 ~l~~L~RG---------------~t~a--~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+-+.|..+ ..+. .....++..-+.++.+|+.|+.|+.||......
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 11222111 0011 122345555677899999999999999865543
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.69 E-value=0.00051 Score=74.70 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec-----------------------------------C
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-----------------------------------Y 390 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~-----------------------------------d 390 (838)
+.+-.|.||.+.+.+. ..++--...+.-++|+|||++.|-++. |
T Consensus 111 eF~lriTVWSL~t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKG-YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred cceeEEEEEEecccee-EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 3455788999887653 344444456678899999999998876 3
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 391 Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
|..+-|||.--. ..+|-.+||. .|..++|||.+++||+|+.|+.++|-+
T Consensus 190 g~~laVwd~~Le-----------------ykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 190 GNWLAVWDNVLE-----------------YKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CcEEEEecchhh-----------------heeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 444444443110 2444555664 589999999999999999999998854
No 244
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0014 Score=75.26 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=69.5
Q ss_pred ccCCCceEEEEECCCCcEE-------EEe---ccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEecC---CCcccCCCC
Q 003221 344 DMDNAGIVVVKDFVTRAII-------SQF---KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIM---PSCMRSGSG 409 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v-------~~~---~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~---p~~~~~~~G 409 (838)
+++.||+++-||+...... ..+ ..-.-...+++.||.- .+||.|+. +-..|+||.. +.... .|
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-dpfarLYD~Rr~lks~~s--~~ 241 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-DPFARLYDRRRVLKSFRS--DG 241 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC-CchhhhhhhhhhccCCCC--Cc
Confidence 3567899999998763211 111 1112356789999975 46777776 6779999942 22111 12
Q ss_pred CCccccCCcceEEE-------EEeccc-ccc--cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcc
Q 003221 410 NHKYDWNSSHVHLY-------KLHRGI-TSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 410 ~~~~~~~~~~~~l~-------~L~RG~-t~a--~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~ 467 (838)
.......-...++. +..+|. +.. .++-+.|+|+|.-|.+.=.-.-|.+|+++..+++.
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 21100000011121 222332 111 25678899999988887777789999998766654
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.003 Score=72.87 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=102.1
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeC---CeEEEEECCCCceeeEEeecCCcccCCCCcccccc
Q 003221 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLA---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (838)
Q Consensus 171 ~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~---~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~ 245 (838)
--+++.+++.+..+++..|.-.++|++|.+++. -++|+.. ..+-|||++. ..++.+-+-|
T Consensus 249 GEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egp-------------- 313 (566)
T KOG2315|consen 249 GEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGP-------------- 313 (566)
T ss_pred ccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCC--------------
Confidence 347899999997778888888899999999885 5666553 4699999873 3334332211
Q ss_pred ccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCC
Q 003221 246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (838)
Q Consensus 246 g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~ 323 (838)
.+.+-++| ++|..++
T Consensus 314 -RN~~~fnp~g~ii~lAG-------------------------------------------------------------- 330 (566)
T KOG2315|consen 314 -RNTAFFNPHGNIILLAG-------------------------------------------------------------- 330 (566)
T ss_pred -ccceEECCCCCEEEEee--------------------------------------------------------------
Confidence 22232222 2221111
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC-----CCEEEEEe
Q 003221 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFR 398 (838)
Q Consensus 324 gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d-----Gt~IrVwd 398 (838)
-|.-.|.|-|||+.+.+.+..+.+-.. +...|+|||.+++||..- ++-|+||+
T Consensus 331 --------------------FGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 331 --------------------FGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred --------------------cCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 123468899999999999999988654 457899999999999874 44599999
Q ss_pred cCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 399 i~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
.. | ..+++-. ... ..+.+.|-|-.
T Consensus 389 yt--------G----------~~l~~~~--f~s-EL~qv~W~P~~ 412 (566)
T KOG2315|consen 389 YT--------G----------SLLHEKM--FKS-ELLQVEWRPFN 412 (566)
T ss_pred ec--------C----------ceeehhh--hhH-hHhheeeeecC
Confidence 83 5 3555421 111 47778888753
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.67 E-value=0.027 Score=62.97 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=38.7
Q ss_pred CceEEEEECC--CC--cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 348 AGIVVVKDFV--TR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 348 ~G~V~VwDl~--s~--~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
...|.+|++. ++ +.+..+.....--..++|+|+|++|+.+..++..|.+|++.+
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 4567788873 22 334444443444688999999999999999888999999854
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.003 Score=72.94 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred cCCCceEEEEECCCCcEEEEeccC------CC-----CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcc
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAH------TS-----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH------~s-----pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~ 413 (838)
|..+|.|..||-.....+..+.+. -+ .|++|.|+.||-.+|.|...|. +-|||+...
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~----------- 260 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRAS----------- 260 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccC-----------
Confidence 345788888988877666655542 22 4999999999999999999897 789999642
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCCCCCccccc
Q 003221 414 DWNSSHVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 414 ~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
..+..-..| -.-+|..|.|-+. ++--+++-+..+++||+=...+.-..+.
T Consensus 261 ------~pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 261 ------KPLLVKDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ------CceeecccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 122222112 1236899999654 3444555566789999976655444443
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.61 E-value=0.0028 Score=69.51 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=54.4
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe---cc-----cccc---cEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSA---TIQDI 437 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~---RG-----~t~a---~I~sI 437 (838)
-+.|+.+.|+++|++|+|-+- -+++|||+.-. . .....|..+ |- ..+. .=..+
T Consensus 272 IsSISDvKFs~sGryilsRDy--ltvk~wD~nme------~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY--LTVKLWDLNME------A--------KPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hhhhhceEEccCCcEEEEecc--ceeEEEecccc------C--------CcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 457889999999999999886 35999999421 0 001222221 10 0011 12468
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCC
Q 003221 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 438 aFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+||-|+.++++||-...+|||++..
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEcCCcceEecccccceEEEecCCC
Confidence 9999999999999999999999654
No 249
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.60 E-value=0.037 Score=70.85 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=52.1
Q ss_pred EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-ccc-----------ccccEEEEEEc
Q 003221 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGI-----------TSATIQDICFS 440 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG~-----------t~a~I~sIaFS 440 (838)
..++|+++|.++++-+. ++.|++||.... .+..+- .|. .-.....|+++
T Consensus 807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg------------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSY-NHKIKKLDPATK------------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ceeeEeCCCcEEEEECC-CCEEEEEECCCC------------------eEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 47999999997776665 667999998531 111110 110 00136789999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+||+.+++-+.+++|++|++....
T Consensus 868 ~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 868 ENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCEEEEECCCCEEEEEECCCCc
Confidence 999999999999999999997643
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.0012 Score=76.23 Aligned_cols=180 Identities=19% Similarity=0.278 Sum_probs=122.8
Q ss_pred EEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCc
Q 003221 77 VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV 156 (838)
Q Consensus 77 vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~ 156 (838)
++++|...-+--++++ .|....-+....+++.++.+.|. +-|||. |.
T Consensus 148 ly~~gsg~evYRlNLE-qGrfL~P~~~~~~~lN~v~in~~-------------hgLla~--Gt----------------- 194 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLE-QGRFLNPFETDSGELNVVSINEE-------------HGLLAC--GT----------------- 194 (703)
T ss_pred EEEeecCcceEEEEcc-ccccccccccccccceeeeecCc-------------cceEEe--cc-----------------
Confidence 6777777778888985 57777777777789999999864 236643 21
Q ss_pred ccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCc------------EEEEEeCCC--eEEEEeC-CeEEEEECCCC
Q 003221 157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS------------VCMVRCSPR--IVAVGLA-TQIYCFDALTL 221 (838)
Q Consensus 157 ~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~------------V~sV~~s~~--iLaV~l~-~~I~IwD~~t~ 221 (838)
..++|.+||.++.+.+.+|..... |.++.|+.+ .++||.. +.|+|||+++-
T Consensus 195 --------------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 195 --------------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred --------------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 127899999999999999976655 899999885 6777774 57999999987
Q ss_pred ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhh
Q 003221 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (838)
Q Consensus 222 e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds 301 (838)
+.+.. ..|-.. -++ .-|.+-.. + .| ..+
T Consensus 261 ~pl~~-kdh~~e--------------~pi----~~l~~~~~-------~---~q----------------~~v------- 288 (703)
T KOG2321|consen 261 KPLLV-KDHGYE--------------LPI----KKLDWQDT-------D---QQ----------------NKV------- 288 (703)
T ss_pred Cceee-cccCCc--------------cce----eeeccccc-------C---CC----------------ceE-------
Confidence 76543 222210 001 01111100 0 00 000
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 003221 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (838)
Q Consensus 302 ~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdG 381 (838)
......+++|||-.+++..+.+.. +.+|+.+||=|++
T Consensus 289 ------------------------------------------~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s 325 (703)
T KOG2321|consen 289 ------------------------------------------VSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS 325 (703)
T ss_pred ------------------------------------------EecchHHhhhcccccCCceeeccc-cCCcCceeeecCC
Confidence 012345789999999998887775 4569999999999
Q ss_pred CEEEEEecCCCEEEEEec
Q 003221 382 TLLVTASVYGNNINIFRI 399 (838)
Q Consensus 382 tlLATAS~dGt~IrVwdi 399 (838)
-++.+|-+.+. +..|=|
T Consensus 326 Gm~f~Ane~~~-m~~yyi 342 (703)
T KOG2321|consen 326 GMFFTANESSK-MHTYYI 342 (703)
T ss_pred ceEEEecCCCc-ceeEEc
Confidence 99999998654 666655
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0066 Score=70.44 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=46.5
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEecCCCEEEEEecC
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd-----GtlLATAS~dGt~IrVwdi~ 400 (838)
.+.|.+||+.+++++.+|.+|.+||++++|--+ |.++.+...-++.|.+|-+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 468999999999999999999999999999888 77777766657778999874
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.0016 Score=74.04 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+.++.-|.-+.|++ . +.+|+.|.++ .+-|||.....-+..-.++|...|--.+|+| |.+.
T Consensus 137 kL~~H~GcVntV~FN~----~---Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP----------~s~d 199 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ----R---GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP----------FSGD 199 (559)
T ss_pred cccCCCCccceeeecc----c---CceeeccCccceEEeehhhccCcccccccccccchhhhhccC----------CCCC
Confidence 4577888899899988 2 5689999887 4999999765555566678888888889998 6666
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEEC-CCCeEE---EEEeCCCcEEEEEeCCC--
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYE---HVLRFRSSVCMVRCSPR-- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl-~tg~~V---~tL~f~s~V~sV~~s~~-- 203 (838)
++++ ..+.| +.|++=.+ .++.+. ..-+++++|+-++..|.
T Consensus 200 ~ti~-~~s~d---------------------------------gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 200 RTIV-TSSRD---------------------------------GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred cCce-ecccc---------------------------------CceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 6764 21211 22333222 122222 22256788888887654
Q ss_pred --eEEEEeCCeEEEEECCCCce
Q 003221 204 --IVAVGLATQIYCFDALTLEN 223 (838)
Q Consensus 204 --iLaV~l~~~I~IwD~~t~e~ 223 (838)
++..+-+.-+.-+|+++...
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred CcccccccccceeeeeeccCCc
Confidence 45555566788889887543
No 253
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.51 E-value=0.00033 Score=52.45 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=31.4
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
++..+ +|+ ...|++|+|+|++++|++++.|++|+||+
T Consensus 3 ~~~~~-~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 55666 343 45799999999999999999999999997
No 254
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.46 E-value=0.0014 Score=72.97 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=71.8
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
..+.+|....+ ....+-+|-+-|..++|+||+++|.||+.|++ |||=.. |. . .-+..|.-|
T Consensus 132 ~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-pa-------~---------f~IesfclG 192 (390)
T KOG3914|consen 132 YSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-PA-------T---------FVIESFCLG 192 (390)
T ss_pred eeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-Cc-------c---------cchhhhccc
Confidence 44555555443 34566789999999999999999999999876 898776 31 1 123445556
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
++. =|..|+.-+ ++.|+++|.|+|+++|++..+...
T Consensus 193 H~e-FVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 193 HKE-FVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cHh-heeeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence 543 477777764 567999999999999999987755
No 255
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.024 Score=62.76 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=70.4
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEee---e-------c--cCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVS---K-------R--DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN 142 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells---~-------h--dg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~ 142 (838)
...|++|.+.|+.||..+.+.+.....+ . + ..+|.++++.+++ ..|+..+
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-------------t~l~tAS----- 214 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-------------TILVTAS----- 214 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCC-------------CEEeecc-----
Confidence 4589999999999999987655433211 1 1 1468888888753 1232211
Q ss_pred cCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC---eEEEEeCCeEEEEEC
Q 003221 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAVGLATQIYCFDA 218 (838)
Q Consensus 143 ~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~---iLaV~l~~~I~IwD~ 218 (838)
+.+..++|||..+++.+--..+ .+.+..++++|+ ++|+..+...++|+.
T Consensus 215 ---------------------------~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 215 ---------------------------FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred ---------------------------cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 1136799999999988766644 368889999997 677777888899965
Q ss_pred CC
Q 003221 219 LT 220 (838)
Q Consensus 219 ~t 220 (838)
..
T Consensus 268 ~q 269 (445)
T KOG2139|consen 268 NQ 269 (445)
T ss_pred cc
Confidence 54
No 256
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.36 E-value=0.2 Score=51.73 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCC----------e-EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccc
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSP----------I-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~sp----------I-saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~ 414 (838)
..+|.|..+|+.+++.+.....+..+ + ..+.++ +| .+..++.+|..+.+ |+.. |
T Consensus 129 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~t-------g----- 193 (238)
T PF13360_consen 129 TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLAT-------G----- 193 (238)
T ss_dssp ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTT-------T-----
T ss_pred eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCC-------C-----
Confidence 34789999999999998888775533 1 334444 55 55556655776777 8854 3
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..+.+.. .. .+.. .+..++..|++++.+++++.|++.+.
T Consensus 194 -----~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 -----EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -----EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred -----CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3333321 11 1222 25678888998889999999998764
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.31 E-value=0.0031 Score=78.04 Aligned_cols=97 Identities=13% Similarity=0.313 Sum_probs=72.6
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003221 354 KDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (838)
Q Consensus 354 wDl~s~~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a 432 (838)
|.. .|..++++..|...|..++.++. +.+++|||.||+ ||||++.... +.+ | ....++.|.. ...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~------s~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-G------SARSELTYSP----EGS 1099 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-c------eeeeeEEEec----cCC
Confidence 444 36789999999999999988886 499999999886 9999985421 110 1 0111233333 223
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 433 ~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.+..+.+.+.+..+|+++.||.|++++|+.+.
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 68899999999999999999999999999863
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.017 Score=67.22 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=75.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
++.+++|..|++..++.++.+++-...+.+++.+|||..|++||. .|++||+.+ + +.+.+
T Consensus 120 ~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~~ 179 (541)
T KOG4547|consen 120 VGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVIT 179 (541)
T ss_pred cCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEEE
Confidence 456899999999999999999999999999999999999999985 599999975 2 34445
Q ss_pred EecccccccEEEEEEccC-----CCEEEEE-eCCCeEEEEecCC
Q 003221 425 LHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP 462 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpD-----g~~Las~-S~dGTVhIw~l~~ 462 (838)
| .| |...|.+++|--+ |.++.++ -...-+.+|.+..
T Consensus 180 f-tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 F-TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred e-cC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 45 4568999999887 6665543 3333477787765
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.25 E-value=0.0077 Score=66.20 Aligned_cols=219 Identities=16% Similarity=0.225 Sum_probs=130.6
Q ss_pred CCCEEEEE-ECCCCeEEEEEeC--CCcEEEEEeCCC--eEEEEeCC-eEEEEECCC-CceeeEEeecCCcccCCCCcccc
Q 003221 171 SPTAVRFY-SFQSHCYEHVLRF--RSSVCMVRCSPR--IVAVGLAT-QIYCFDALT-LENKFSVLTYPVPQLAGQGAVGI 243 (838)
Q Consensus 171 ~p~tV~IW-Dl~tg~~V~tL~f--~s~V~sV~~s~~--iLaV~l~~-~I~IwD~~t-~e~l~tL~t~p~p~~~~~~~~~~ 243 (838)
.+++|||| ....+++...+.+ ++++.++....+ +|.|++++ .+.-|-+.. .+...-++.++.- ++.
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h----~~~--- 116 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH----QAR--- 116 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh----hcc---
Confidence 45899999 4567888777754 577888887764 88888865 566665432 2111111222210 000
Q ss_pred ccccceeEEcccEEEEeCC-CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCC
Q 003221 244 NVGYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (838)
Q Consensus 244 ~~g~g~~Alspr~LAys~~-~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p 322 (838)
+..-.+++.+.|+-..+. +...|....- | +.|.+|.-...+
T Consensus 117 -v~~~if~~~~e~V~s~~~dk~~~~hc~e~------------------~-------------------~~lg~Y~~~~~~ 158 (404)
T KOG1409|consen 117 -VSAIVFSLTHEWVLSTGKDKQFAWHCTES------------------G-------------------NRLGGYNFETPA 158 (404)
T ss_pred -eeeEEecCCceeEEEeccccceEEEeecc------------------C-------------------CcccceEeeccC
Confidence 001123444566655443 3444543110 0 122333222111
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEEC--CCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF--VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 323 ~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl--~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
.+...+-. ..+ .|+..|.|.+-.+ .....+.++.+|..+|.+++++|.-.+|.++.. ++.+.+||+-
T Consensus 159 ----t~~~~d~~-----~~f-vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig 227 (404)
T KOG1409|consen 159 ----SALQFDAL-----YAF-VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG 227 (404)
T ss_pred ----CCCceeeE-----EEE-ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc
Confidence 11111110 011 3556666665444 346688999999999999999999999999999 5668899993
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 401 p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
|. .-..+++.+. +..|+.++--+--+.|.+++.||-|-+|+++-.
T Consensus 228 --------g~--------~g~~~el~gh--~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 --------GR--------KGTAYELQGH--NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred --------CC--------cceeeeeccc--hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 21 1245666542 345788887788899999999999999999754
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.082 Score=61.46 Aligned_cols=100 Identities=13% Similarity=0.234 Sum_probs=72.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEe-cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS-~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.++.++++....+...+. -.+||-+++|+|+|+-++.+- --=..+-|||+. | ..++.|-.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE 311 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence 467788877444444443 368999999999998777543 223458899984 3 47888866
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC---CeEEEEecCCCCCcccccc
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~d---GTVhIw~l~~~gg~~~~~~ 471 (838)
|.. .++-|+|-|++|+.++.. |.+-|||+..++....+..
T Consensus 312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 643 457899999999998876 7899999998876655543
No 261
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.14 E-value=0.007 Score=65.97 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc-CCcceEE
Q 003221 347 NAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW-NSSHVHL 422 (838)
Q Consensus 347 ~~G~V~VwDl~s~---~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~-~~~~~~l 422 (838)
.|..-.||...++ +..-.|.-|.....++.++|.+.++|++|. +++|-||=.+.. .+| -+ +|+
T Consensus 75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs--Khi 141 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS--KHI 141 (361)
T ss_pred CCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh--hhh
Confidence 3444455555222 233445567889999999999999999998 889999977431 122 10 233
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.+= .+..|.++.|.|++-.||+||.|+.++||..
T Consensus 142 kkP----irStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 142 KKP----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred CCc----cccceeeeeccCCcceecccccCcceeEEEE
Confidence 221 2246999999999999999999999999985
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.11 E-value=0.56 Score=59.48 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=64.5
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
...++|||-. |....+-..-.+-=.+|+|-|+|.++|+.-..+ +.|..|.= | |- .+--+.|
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------N--GL--------rhgeF~l 298 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------N--GL--------RHGEFTL 298 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------C--Cc--------EeeeEec
Confidence 3579999976 544444333222235789999999999987632 34545542 2 31 0122455
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+.......|..|+|++||..||+.-.|. |.+|...-|
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 4323345799999999999999988654 999998765
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.08 E-value=0.0073 Score=68.02 Aligned_cols=99 Identities=9% Similarity=-0.003 Sum_probs=76.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec---------CCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
|.|.|.|..+++.+.++..-..|-- + +||||+.|..|.. +...|.|||+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----------------
Confidence 8899999999999999987655544 4 9999999999998 7778999999752
Q ss_pred eEEEEEecccc-----cccEEEEEEccCCCEEEEEe-C-CCeEEEEecCCCCCc
Q 003221 420 VHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPFGGD 466 (838)
Q Consensus 420 ~~l~~L~RG~t-----~a~I~sIaFSpDg~~Las~S-~-dGTVhIw~l~~~gg~ 466 (838)
+.+.++.-|.. ...-..+++||||++|.+.. + +..|.|.|+...+-.
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence 35555543221 11245789999999999877 3 688999999876543
No 264
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.07 E-value=0.0034 Score=68.49 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=70.1
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
..++.|++|++...+--..+..-..+++++++||||+.|.+.|+-+-.|.||.+.+. ..+-+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~~ 129 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYLL 129 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEEe
Confidence 357899999999888788888888999999999999887777776777999999641 22222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCe
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGT 454 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGT 454 (838)
.. -.+.+..++|.|||++.|..+.+..
T Consensus 130 ~~--pK~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 130 PH--PKTNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred cc--cccCceeEEECCCCceeeeeecccH
Confidence 21 1234788999999999999998743
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.01 E-value=0.054 Score=62.57 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=55.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
+..|.++|+.+++ ...+..+........|+|||+.|+-.+..+..-.||.+... +|. .+.+ .. .
T Consensus 256 ~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-----~g~--------~~rl-t~-~ 319 (419)
T PRK04043 256 QPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-----SGS--------VEQV-VF-H 319 (419)
T ss_pred CcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-----CCC--------eEeC-cc-C
Confidence 3568888887765 34444443323345899999988877754443455544221 121 1111 11 2
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCC-------eEEEEecCCCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKG-------TCHVFVLSPFGG 465 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dG-------TVhIw~l~~~gg 465 (838)
|. ....|||||++|+..+... +-+||-++..++
T Consensus 320 g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 320 GK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 32 1248999999999888653 245665554444
No 266
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.00 E-value=0.0018 Score=44.90 Aligned_cols=38 Identities=32% Similarity=0.708 Sum_probs=33.4
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 003221 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (838)
Q Consensus 360 ~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (838)
+.+..+.+|..+|.+++|++++.++++++.+|+ +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 456778899999999999999999999999775 89996
No 267
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.97 E-value=0.021 Score=69.25 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=126.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-cEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccce
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s-~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~ 249 (838)
...+..+|+++.++.......+ .|.=++-|.+.+.+|. .+.|.+-|.++.+..+++.+|..- ...
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD 222 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD 222 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence 3678889999999988888765 7888888888777766 467999999999999999887652 223
Q ss_pred eEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCc
Q 003221 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (838)
Q Consensus 250 ~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~ 329 (838)
|.+....|+..+... | .|
T Consensus 223 fDv~GNlLitCG~S~------R-------------------------------------------~~------------- 240 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSM------R-------------------------------------------RY------------- 240 (1118)
T ss_pred eeccCCeEEEeeccc------c-------------------------------------------cc-------------
Confidence 444434443332110 0 00
Q ss_pred cCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCC
Q 003221 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 330 s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~ 408 (838)
. -.-|--|+|||+...+.+.-+.-|..| ..+.|.|. -+.||.+|..|. +.+-|...- +|
T Consensus 241 ---------~-----l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l--sN-- 300 (1118)
T KOG1275|consen 241 ---------N-----LAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL--SN-- 300 (1118)
T ss_pred ---------c-----ccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc--CC--
Confidence 0 012556999999998888888777777 77899997 556777777686 666664211 01
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
......++... ...|..+.||+.++.||.+-.+|.||+|.=
T Consensus 301 ------P~~~~~~v~p~-----~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 ------PPAGVKMVNPN-----GSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ------CccceeEEccC-----CCcceeEEecCCCceEEEecccCcEeeecC
Confidence 00001111111 123899999999999999999999999983
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.93 E-value=0.0033 Score=80.24 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=65.7
Q ss_pred CCceEEEEECCC--CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 347 NAGIVVVKDFVT--RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 347 ~~G~V~VwDl~s--~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
.++.|.+||.-- +.-+.+ .+|.+.+++++|-|.-++|.||+.+|. |.|||+... ++.+.
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr-----------------ql~h~ 2373 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR-----------------QLRHT 2373 (2439)
T ss_pred CCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH-----------------HHHHH
Confidence 457788999643 222223 899999999999999999999999998 899999531 12112
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+ +. +. .-.++.+++.+|+++||+++.++-
T Consensus 2374 ~---------~~--~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2374 F---------QA--LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred h---------hh--hh-hhheeeccCcccceEEEEccccch
Confidence 1 11 23 456899999999999999998754
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.13 Score=59.86 Aligned_cols=292 Identities=13% Similarity=0.164 Sum_probs=151.1
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+..|++=-..||++|--++-+.+++.. .-.|.++.++|+ ..+|+.-+.... .
T Consensus 221 ~GTYL~t~Hk~GI~lWGG~~f~r~~RF~---Hp~Vq~idfSP~-------------EkYLVT~s~~p~---~-------- 273 (698)
T KOG2314|consen 221 KGTYLVTFHKQGIALWGGESFDRIQRFY---HPGVQFIDFSPN-------------EKYLVTYSPEPI---I-------- 273 (698)
T ss_pred CceEEEEEeccceeeecCccHHHHHhcc---CCCceeeecCCc-------------cceEEEecCCcc---c--------
Confidence 4778888888999999986655443322 235999999986 225544332111 0
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC-----cEEEEEeCCCeEEEEeCCeEEEEECCCCceeeEE
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS-----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s-----~V~sV~~s~~iLaV~l~~~I~IwD~~t~e~l~tL 227 (838)
..|+ + ..+..++|||.+||.....+.. ++ ++..=..+.+++|--..+.|.||+...+.++-
T Consensus 274 -----~~~~---d---~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld-- 340 (698)
T KOG2314|consen 274 -----VEED---D---NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD-- 340 (698)
T ss_pred -----cCcc---c---CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec--
Confidence 0111 0 1357899999999998887754 22 33333444558888888999999988765321
Q ss_pred eecCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
.-+.. .. |..-+.++| ..|||=.... . ..|..++-..+ |+...+-. ...-++
T Consensus 341 -~Kslk------i~----gIr~FswsP~~~llAYwtpe~-----~-~~parvtL~ev-----Ps~~~iRt----~nlfnV 394 (698)
T KOG2314|consen 341 -KKSLK------IS----GIRDFSWSPTSNLLAYWTPET-----N-NIPARVTLMEV-----PSKREIRT----KNLFNV 394 (698)
T ss_pred -ccccC------Cc----cccCcccCCCcceEEEEcccc-----c-CCcceEEEEec-----Cccceeee----ccceee
Confidence 11111 00 233455666 6788732100 0 00000000000 01110000 000000
Q ss_pred hccccccccccccccCCCCCCCCccCCCcccccccccc-ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~-~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlL 384 (838)
+.. +| |++. +.-.+++ ++.+.+-. ..+.--.+.|+.+..+.+....-.-..+|-+.++.|.|..+
T Consensus 395 sDc---kL--hWQk-----~gdyLcv----kvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 395 SDC---KL--HWQK-----SGDYLCV----KVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKF 460 (698)
T ss_pred ecc---EE--Eecc-----CCcEEEE----EEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeE
Confidence 000 00 0000 0000000 00010000 01112246677776655433333456789999999999999
Q ss_pred EEEecC--CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC---CCeEEEEe
Q 003221 385 VTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS---KGTCHVFV 459 (838)
Q Consensus 385 ATAS~d--Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~---dGTVhIw~ 459 (838)
|+-+.. -.++.+|-+... + ....++.+|.. + .-..|.|||.|+|++++.. .|++..+|
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk--~--~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDK--K--FANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred EEEEccccccceeEEEeecC------C-------Cchhhhhhhcc--c--ccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 986642 345778877532 1 11234555543 1 2467899999999988654 57899988
Q ss_pred cCC
Q 003221 460 LSP 462 (838)
Q Consensus 460 l~~ 462 (838)
.+-
T Consensus 524 ~~~ 526 (698)
T KOG2314|consen 524 TDY 526 (698)
T ss_pred cch
Confidence 763
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.75 Score=51.32 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=27.6
Q ss_pred eEEEEECCCCCEEEEEecCCCEEEEEecCCC
Q 003221 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (838)
-....|+|+|++|+.|.+++.+|.||.+.+.
T Consensus 293 PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 293 PRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 3678899999999999999999999999764
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.78 E-value=1.3 Score=49.82 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=56.2
Q ss_pred CCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
..+|.|..+|..+++.+....... ........ .|.+|++++.+|. +.+||..+ | +.+.+
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~~ 345 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVAR 345 (377)
T ss_pred CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEEE
Confidence 468999999999998776653211 11222222 3668888888775 88999754 4 45555
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
+.-+.. ....+-++. |+ .|.+++.||+|+.|.
T Consensus 346 ~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 346 LKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 543221 112222333 33 588999999998773
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.73 E-value=0.17 Score=58.49 Aligned_cols=281 Identities=17% Similarity=0.210 Sum_probs=148.3
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+..|+.....|+++|+-+..+ .++.-...-|+.+.+.|+ +.+|....-....
T Consensus 43 ~G~~l~~~~~~~V~~~~g~~~~---~l~~~~~~~V~~~~fSP~-------------~kYL~tw~~~pi~----------- 95 (561)
T COG5354 43 LGTYLFSEHAAGVECWGGPSKA---KLVRFRHPDVKYLDFSPN-------------EKYLVTWSREPII----------- 95 (561)
T ss_pred cchheehhhccceEEccccchh---heeeeecCCceecccCcc-------------cceeeeeccCCcc-----------
Confidence 4778888888999999986544 333334456888888875 3366544321110
Q ss_pred CCcccCccCCCCCC-CCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEeCCCeEEEEeCCeEEEEECCCCceeeE
Q 003221 154 GGVRDGMMDSQSGN-CVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGLATQIYCFDALTLENKFS 226 (838)
Q Consensus 154 ~~~~~gs~d~~~~~-~~~~p~tV~IWDl~tg~~V~tL~f~s------~V~sV~~s~~iLaV~l~~~I~IwD~~t~e~l~t 226 (838)
++.... +....+.+.+||..+|..+..+.... ++.-..++..++|=...+.++|+++ |...
T Consensus 96 --------~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~--- 163 (561)
T COG5354 96 --------EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNI--- 163 (561)
T ss_pred --------ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCcc---
Confidence 000000 11234579999999999998886542 3666667777766566678999997 3211
Q ss_pred EeecCCcccCCCCccccccccceeEEcc----cEEEEeCC-------CceeecCCCCCCcccCCCCCCCCCCCCCCccee
Q 003221 227 VLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASN-------TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 295 (838)
Q Consensus 227 L~t~p~p~~~~~~~~~~~~g~g~~Alsp----r~LAys~~-------~~~l~~~G~vs~q~l~~~~~s~stsps~gslva 295 (838)
..+|-.....+ |..-++++| .-|||=.. .+.+|..+. +..++-
T Consensus 164 -~~~p~~~lr~~-------gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~------------------~s~l~t 217 (561)
T COG5354 164 -EEHPFKNLRPV-------GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK------------------NSVLVT 217 (561)
T ss_pred -ccCchhhcccc-------ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC------------------CCeeee
Confidence 11221100000 233455554 12444210 122222211 001100
Q ss_pred eeehhhhhhhhcccc---ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe
Q 003221 296 RYAMEHSKQFAAGLS---KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI 372 (838)
Q Consensus 296 ~~A~ds~k~la~Gl~---ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spI 372 (838)
....++ +++. +.+..|.--+. +. . .+.+- +-=...++.|+++....+... ..-.+||
T Consensus 218 ----k~lfk~-~~~qLkW~~~g~~ll~l~-~t-----~----~ksnK----syfgesnLyl~~~~e~~i~V~-~~~~~pV 277 (561)
T COG5354 218 ----KNLFKV-SGVQLKWQVLGKYLLVLV-MT-----H----TKSNK----SYFGESNLYLLRITERSIPVE-KDLKDPV 277 (561)
T ss_pred ----eeeEee-cccEEEEecCCceEEEEE-EE-----e----eeccc----ceeccceEEEEeeccccccee-ccccccc
Confidence 000000 0000 01111110000 00 0 00000 000135688898874443222 2557899
Q ss_pred EEEEECCCCCEEEEEe-cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003221 373 SALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (838)
Q Consensus 373 saLaFSPdGtlLATAS-~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~ 451 (838)
-..+|+|.+..+|+.+ -....+.+||+. | ...+.+-.+. =.-+.|||.++|+..++.
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr--------~----------Nl~~~~Pe~~----rNT~~fsp~~r~il~agF 335 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLR--------G----------NLRFYFPEQK----RNTIFFSPHERYILFAGF 335 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccc--------c----------ceEEecCCcc----cccccccCcccEEEEecC
Confidence 9999999999999988 555668999984 2 1333332222 234779999999988887
Q ss_pred CC---eEEEEecC
Q 003221 452 KG---TCHVFVLS 461 (838)
Q Consensus 452 dG---TVhIw~l~ 461 (838)
+. .+-||+..
T Consensus 336 ~nl~gni~i~~~~ 348 (561)
T COG5354 336 DNLQGNIEIFDPA 348 (561)
T ss_pred CccccceEEeccC
Confidence 74 47888754
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.72 E-value=0.94 Score=50.88 Aligned_cols=57 Identities=16% Similarity=0.023 Sum_probs=41.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEE-EeCCCeEEE-EeCCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV-~~s~~iLaV-~l~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|..+|.++|+.+....+...+.+. ....+.+.+ ..++.|++||+.+++.+++...
T Consensus 115 g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 67999999999999888877655432 223344444 4567899999999998887654
No 274
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.71 E-value=0.011 Score=68.90 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=67.9
Q ss_pred EEEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 351 VVVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 351 V~VwDl~s~~~--v~~~-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
-.+|++..++. ++.. -.+.++|.+.+++|+.+.|+.|.+||. |++||... + +-.+-+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~k 297 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAK 297 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeee
Confidence 35677765432 2222 257889999999999999999999887 89999854 1 111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
. ......++|+|||..+++++.+|.+.+||+.-.
T Consensus 298 a--~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 298 A--EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred e--cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 1 124788999999999999999999999998643
No 275
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.0094 Score=67.93 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=49.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
+|+.-|.|.|||-.+++.+.-++|-..-|+||.=.|-=-+|||.+. ++-||||--
T Consensus 411 SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP 465 (559)
T KOG1334|consen 411 SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTP 465 (559)
T ss_pred ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC-ccceeeecC
Confidence 5778899999999999999888987779999999999999999999 566999964
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.45 E-value=0.031 Score=63.69 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=74.3
Q ss_pred cCCCc-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 345 MDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 345 g~~~G-~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+..+| .+-|||..+++ +..+...-+.|.+|..+|||++++.|-.... |-+.|+.. |. .+.+-
T Consensus 377 gt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididn-------gn--------v~~id 439 (668)
T COG4946 377 GTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDN-------GN--------VRLID 439 (668)
T ss_pred eccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecC-------CC--------eeEec
Confidence 45677 79999998876 4566777889999999999999998887554 66777753 31 12333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCC----eEEEEecCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSPF 463 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dG----TVhIw~l~~~ 463 (838)
+-+. +-|.++.|+|+++|||-+=-+| .||||++...
T Consensus 440 kS~~----~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 440 KSEY----GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred cccc----ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 3333 3599999999999999987776 5899998753
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.056 Score=64.77 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=75.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC------CCE---EEEEecCCCcccCCCCCCccc
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------GNN---INIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d------Gt~---IrVwdi~p~~~~~~~G~~~~~ 414 (838)
-|.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--.. .|+|.+.. |.+ +-|=|+.+ |.
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrt-------Gl---- 509 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRT-------GL---- 509 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccc-------cc----
Confidence 46789999999999999999999999999999997665 45555431 111 22334432 31
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.+-++-.++.....|.-|.-|.-++||++.=.|.-+-||++...
T Consensus 510 -----sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 -----SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -----ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 11122225666678999999999999999999999999998654
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.37 E-value=0.25 Score=59.49 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=88.5
Q ss_pred EeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcc--cCCcEEEEEECCCC
Q 003221 64 FDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR--KLHPFLLVVAGEDT 141 (838)
Q Consensus 64 Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~--~srpLLavV~~d~t 141 (838)
|+..++++ .-+++-|.-+-+-|-|.-. -...+.+..|...|..|+|.|.|... |.+. ...++||+ +|-
T Consensus 18 ~~A~Dw~~---~GLiAygshslV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~---~llS~~~~~lliAs--aD~- 87 (1062)
T KOG1912|consen 18 RNAADWSP---SGLIAYGSHSLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPR---DLLSPSSSQLLIAS--ADI- 87 (1062)
T ss_pred ccccccCc---cceEEEecCceEEEEehhh-hhhhhccccCccceeEEEeccCCCch---hccCccccceeEEe--ccc-
Confidence 44455555 4578888888899988854 34556778899999999999987533 2233 13455543 321
Q ss_pred CcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEe------CCCe-EEEEeCCeE
Q 003221 142 NTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRC------SPRI-VAVGLATQI 213 (838)
Q Consensus 142 ~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~------s~~i-LaV~l~~~I 213 (838)
.++|.+||+..+..++.+..+ .+|..+.+ ++++ +|.-....|
T Consensus 88 ------------------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 88 ------------------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred ------------------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence 268999999999998888765 47888877 3344 444556789
Q ss_pred EEEECCCCceeeEEe
Q 003221 214 YCFDALTLENKFSVL 228 (838)
Q Consensus 214 ~IwD~~t~e~l~tL~ 228 (838)
.+|+..||+.++.-.
T Consensus 138 vLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYD 152 (1062)
T ss_pred EEEEccCCceeeccc
Confidence 999999999887643
No 279
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.33 E-value=0.25 Score=54.52 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=59.8
Q ss_pred ceEEEEECCCCc-EEE--EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 349 GIVVVKDFVTRA-IIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 349 G~V~VwDl~s~~-~v~--~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
+.|.||++...+ ... .+..+ ..|.+|.. -+.+++.++.... +.++..... + ..+..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKS-VSLLRYDEE------N----------NKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSS-EEEEEEETT------T----------E-EEEE
T ss_pred CEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccC-EEEEEEEcc------C----------CEEEEE
Confidence 568888887666 322 22222 24444444 4668888887554 666654321 1 345566
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.|-.....+.++.|-+|++.++++..+|.+++|..++.
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 55444557999999877789999999999999999753
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.28 E-value=1.7 Score=50.08 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc--EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG--FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G--~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
+++..|.+.+|.. + ..-++.|..+| +-|+|.+ .+++ +.+...-|.|..|++.|++ +
T Consensus 357 ~~~~~VrY~r~~~----~---~e~~vigt~dgD~l~iyd~~-~~e~-kr~e~~lg~I~av~vs~dG-----------K-- 414 (668)
T COG4946 357 GKKGGVRYRRIQV----D---PEGDVIGTNDGDKLGIYDKD-GGEV-KRIEKDLGNIEAVKVSPDG-----------K-- 414 (668)
T ss_pred CCCCceEEEEEcc----C---CcceEEeccCCceEEEEecC-CceE-EEeeCCccceEEEEEcCCC-----------c--
Confidence 5677799888865 2 23577777776 8999984 4544 4444556789999999763 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEeCCC--eEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f--~s~V~sV~~s~~--iLaV 207 (838)
.++ |+.+ ...+-++|+.+|+. ..++- .+-|..+.++++ .+|-
T Consensus 415 ~~v-vaNd--------------------------------r~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 415 KVV-VAND--------------------------------RFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred EEE-EEcC--------------------------------ceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEE
Confidence 333 3321 13567778888875 33332 357888888875 8888
Q ss_pred EeCC-----eEEEEECCCCceeeEEee
Q 003221 208 GLAT-----QIYCFDALTLENKFSVLT 229 (838)
Q Consensus 208 ~l~~-----~I~IwD~~t~e~l~tL~t 229 (838)
+..+ .|++||+.+++ .+.+.+
T Consensus 461 afP~gy~tq~Iklydm~~~K-iy~vTT 486 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGK-IYDVTT 486 (668)
T ss_pred ecCcceeeeeEEEEecCCCe-EEEecC
Confidence 7754 49999999876 344443
No 281
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.011 Score=66.08 Aligned_cols=95 Identities=25% Similarity=0.264 Sum_probs=74.5
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 351 V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
|++.+-.+.+....+..|..-|..|+|||... +|..||. |.+|+|+|+.+++ ....|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~---------------~vssy~a~--- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSC---------------VVSSYIAY--- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEecccce---------------eeeheecc---
Confidence 78887777776677788999999999999877 7888888 7889999997531 12334432
Q ss_pred ccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCCCCc
Q 003221 430 TSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 430 t~a~I~sIaFSpDg~-~Las~S~dGTVhIw~l~~~gg~ 466 (838)
..||+++|.-|.+ +|.+|-.+|.|.|||+....++
T Consensus 236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred --CCceeeeeccCCcceeEEeccCceEEEEEccCCCch
Confidence 3599999997765 6778888999999999876654
No 282
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.25 E-value=0.027 Score=61.61 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 346 DNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~---~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
.+...|.||.....+ ...++.-|...|+.++++|.+..|+|++.|. +-.||...+. | .| ...
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~dr-nayVw~~~~~------~----~W----kpt 93 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDR-NAYVWTQPSG------G----TW----KPT 93 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCC-CccccccCCC------C----ee----ccc
Confidence 456689999887654 6789999999999999999999999999954 5899987321 2 13 333
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..|.|- +.-.++|.|||.+..+|++|.-..|-||-++.
T Consensus 94 lvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 94 LVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred eeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 344442 22378999999999999999999999998764
No 283
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.20 E-value=1.5 Score=48.72 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=62.4
Q ss_pred eEEEEECCCCcEEEE--ec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 350 IVVVKDFVTRAIISQ--FK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~--~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
.+...|..+++++.+ +. -|.-.|.-|+++++|+.++-.=.+|. -++..|.-..-..|. ...+..+
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~---~~~~~PLva~~~~g~--------~~~~~~~ 207 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD---PGDAPPLVALHRRGG--------ALRLLPA 207 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC---CCccCCeEEEEcCCC--------cceeccC
Confidence 477788889998877 52 38889999999999987765544443 112111000000010 0011111
Q ss_pred ----ecccccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCC
Q 003221 426 ----HRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPF 463 (838)
Q Consensus 426 ----~RG~t~a~I~sIaFSpDg~~Las~S~dG-TVhIw~l~~~ 463 (838)
.+.. ...|-||+|+.|+.+++++|-+| .+.+|+..+.
T Consensus 208 p~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 208 PEEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ChHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 0111 12488999999999998888775 6999988764
No 284
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.16 E-value=2.8 Score=46.27 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=41.9
Q ss_pred CEEEEEECCCC-------eEEEEEeCCCcEEEEEeCCCeEEEEeCCeEEEEECCCCc
Q 003221 173 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE 222 (838)
Q Consensus 173 ~tV~IWDl~tg-------~~V~tL~f~s~V~sV~~s~~iLaV~l~~~I~IwD~~t~e 222 (838)
+.|.++++... +.++..+++++|++|..-.+.|+++..+.|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999884 445666789999999888888999999999999998776
No 285
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.14 E-value=0.077 Score=64.63 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=68.2
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
..++..|.++-+-.+|+. .....++..-..+.|..++... | +| .+|+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~~v~imR~Nn--------------r-~l--f~G~t-------------- 195 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLN-TEKETRTTNVSASGVTIMRYNN--------------R-NL--FCGDT-------------- 195 (1118)
T ss_pred cceeecchhhheeeeecc-cceeeeeeeccCCceEEEEecC--------------c-EE--Eeecc--------------
Confidence 456666777788888884 3434444444444577666441 1 33 23321
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCCeEEEEeC-Ce---------EEEEECCCCce
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQ---------IYCFDALTLEN 223 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~iLaV~l~-~~---------I~IwD~~t~e~ 223 (838)
.++|.+-|.++.+.+|++.-+ +.|.++....++|+.|.. .+ |++||+++++.
T Consensus 196 -----------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 196 -----------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred -----------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 278999999999999999754 689999999997776553 22 78999998764
No 286
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.053 Score=60.44 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=80.7
Q ss_pred ccCCCceEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccC
Q 003221 344 DMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s------~~~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~ 416 (838)
+|..|-.++||.+.. .+.+.... .|.+.|.||+|+-..+.|.++..+|++| .-|+.+.
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI-~HDiEt~-------------- 137 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI-KHDIETK-------------- 137 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE-eeecccc--------------
Confidence 466788999999863 23443333 4678999999999999999999989855 6788642
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 417 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+.+|.+........|+.+.-+|-...|++.+.++-|-+|++....
T Consensus 138 ---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 ---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 467776544444579999999999999999999999999986543
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.65 E-value=0.94 Score=49.77 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=54.8
Q ss_pred eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE----------ecccccccE
Q 003221 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL----------HRGITSATI 434 (838)
Q Consensus 365 ~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L----------~RG~t~a~I 434 (838)
|..-.+.|+.+.|+++|+++++-+- -+++|||+.-.. .++.+. ..-..+..|
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k----------------~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAK----------------NPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEecc--ceEEEEeccccc----------------CCceeechHHHHHHHHHhhhhccce
Confidence 3444678999999999999998876 359999985320 111111 000011112
Q ss_pred ---EEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 435 ---QDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 435 ---~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+.||-|.+.+.+||-....-||....
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeecccc
Confidence 3589999999999999999888888544
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.58 E-value=1.9 Score=55.64 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=52.5
Q ss_pred eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC-CCCCCccccCCcceEEEEEec--cc----ccccEEEEEEccCCC
Q 003221 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGNHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQ 444 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~-~~G~~~~~~~~~~~~l~~L~R--G~----t~a~I~sIaFSpDg~ 444 (838)
...|+|+|+|+.|..+....+.|++||+......- ..|. .. ....++.+-. |. .-..-..|+|++||+
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~----~~-~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~ 816 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD----PT-FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ 816 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc----cc-cCcccccccCCCCchhhhhccCCceeeEeCCCc
Confidence 45699999999777777777889999985310000 0000 00 0000111100 00 001235899999999
Q ss_pred EEEEEeCCCeEEEEecCC
Q 003221 445 WIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 445 ~Las~S~dGTVhIw~l~~ 462 (838)
.+++-+.+++|++|+...
T Consensus 817 LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEEECCCCEEEEEECCC
Confidence 999999999999999864
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.34 E-value=0.95 Score=48.98 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCceEEEEEC--CCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 347 NAGIVVVKDF--VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 347 ~~G~V~VwDl--~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
.|.++++.++ .+.+...++.. -..+.+++|+|++++++.+. -..|-.|.|... + ..++.
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s---------ey~~~- 196 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S---------EYIEN- 196 (344)
T ss_pred CCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c---------ceeee-
Confidence 3444555444 44443333332 23889999999999999876 343566666431 2 12222
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.+...+...=.+.+||..+..+|+++.||++-|||+...+
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 2222222334678999999999999999999999997654
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.16 E-value=4 Score=44.57 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=28.1
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
-..-|..|..||||++||+....|. |-+|++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~i 258 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEI 258 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCe-EEEEec
Confidence 4567899999999999999999887 999999
No 291
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.11 E-value=0.078 Score=36.33 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 431 ~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
...|.+++|.++++++++++.|+++.+|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34699999999999999999999999995
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.06 E-value=2.5 Score=46.05 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=58.3
Q ss_pred CCCCeEEEEECCCCCEEEEEecCC-C---------EEEEEecCCCccc---CCCCCCccccCC---cceEEEE----Eec
Q 003221 368 HTSPISALCFDPSGTLLVTASVYG-N---------NINIFRIMPSCMR---SGSGNHKYDWNS---SHVHLYK----LHR 427 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dG-t---------~IrVwdi~p~~~~---~~~G~~~~~~~~---~~~~l~~----L~R 427 (838)
+...|+++.|+|.-++|..|+..- . -+-.|++...... -........... ....+.. .+.
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 467899999999988887766421 1 2567777532100 000000000000 0011111 123
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+.....|..|+.||||+.||+...+|.+-||+|....
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 4344579999999999999999999999999997643
No 293
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=94.94 E-value=0.16 Score=55.30 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 346 DNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
..+|.+.+.+..... .++.+++|.-++....|+.. -.++.||+.||. +.-||+.-. + ..+
T Consensus 140 ~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~----------~~i 202 (339)
T KOG0280|consen 140 DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K----------TFI 202 (339)
T ss_pred cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------cee
Confidence 345666655555443 34588999999999999875 468889998775 999999621 1 122
Q ss_pred EEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCC
Q 003221 423 YKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSp-Dg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+.-.+ .+...|.||.=|| +..+|++|+-|.++++||...-+.
T Consensus 203 ~~n~k-vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 203 WHNSK-VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eecce-eeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 22111 1234588888775 688999999999999999875543
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.93 E-value=5 Score=51.20 Aligned_cols=76 Identities=8% Similarity=0.260 Sum_probs=51.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQW 445 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~ 445 (838)
.....|..|+||+|+++||.--. +. |.+|-... +.| -+.++++-... ..+..+.|+|. ...
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~-~~-vqLWt~~N-----------YHW----YLKqei~~~~~-~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLE-DR-VQLWTRSN-----------YHW----YLKQEIRFSSS-ESVNFVKWDPEKPLR 363 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEec-CC-ceEEEeeC-----------CEE----EEEEEEEccCC-CCCCceEECCCCCCE
Confidence 34567899999999999999765 44 99998732 111 23345543222 23455999995 556
Q ss_pred EEEEeCCCeEEEEec
Q 003221 446 IAIVSSKGTCHVFVL 460 (838)
Q Consensus 446 Las~S~dGTVhIw~l 460 (838)
|.+.+.+|.+.++++
T Consensus 364 L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEecCCcEEEEEE
Confidence 888888788766654
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.11 Score=60.06 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=76.8
Q ss_pred ccCCCceEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcc--------cCCC
Q 003221 344 DMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--------RSGS 408 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s-------~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~--------~~~~ 408 (838)
+++.|.+|++|.++. ..+..+..+|+.||..+.|-.|-+++|+++ |. |++||-.-... +-+.
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk~~a 828 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPKEGA 828 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCcccCC
Confidence 567899999999974 124567789999999999999999998875 43 99999532110 0011
Q ss_pred CCC--------------ccccCCcceEEE---------EEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 409 GNH--------------KYDWNSSHVHLY---------KLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 409 G~~--------------~~~~~~~~~~l~---------~L~R---G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
|.. .....++ .+++ +++- -..++.+.+|+..+.|+|+|++-+.|++-+.|...
T Consensus 829 ~~~ikcl~nv~~~iliAgcsaeST-VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 829 GGNIKCLENVDRHILIAGCSAEST-VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CceeEecccCcchheeeeccchhh-heeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 110 0001111 1111 2211 11235688999999999999999999999988654
Q ss_pred C
Q 003221 463 F 463 (838)
Q Consensus 463 ~ 463 (838)
.
T Consensus 908 G 908 (1034)
T KOG4190|consen 908 G 908 (1034)
T ss_pred C
Confidence 3
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.60 E-value=1.1 Score=48.62 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=57.0
Q ss_pred ccccCCCceEEEEECCCCcEEE-----EeccCCCCeEEEEECCCCCE-EEEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 342 GADMDNAGIVVVKDFVTRAIIS-----QFKAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 342 ~~~g~~~G~V~VwDl~s~~~v~-----~~~aH~spIsaLaFSPdGtl-LATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
++.+.+||.+-|||+....... +=..|.+.+....|+|-|.+ |.--++.=..+.|-|+... .
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~-------~----- 285 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY-------V----- 285 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC-------c-----
Confidence 3467899999999999865432 22358999999999986642 2223333334788887542 1
Q ss_pred CCcceEEEE---EecccccccEEEEEEccCCCEEEEEeCC
Q 003221 416 NSSHVHLYK---LHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 416 ~~~~~~l~~---L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
.++.+.. ..|-+....|..-+|+.++.-+-+.+.+
T Consensus 286 --~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 286 --NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred --eeeEEecCccccccccccccccccccCCCcccccccch
Confidence 0111111 0122222247777777777666665554
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.57 E-value=0.084 Score=56.52 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=70.7
Q ss_pred ccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCccc-CCCCCCccccCCc--
Q 003221 344 DMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSS-- 418 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~-v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~-~~~G~~~~~~~~~-- 418 (838)
.|..+|.|.|||..+... +..+++|..+|+-+-|.|. +..|.|+|+||. +.-||....+.+ +.....-..|-+.
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD~ 275 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGDP 275 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCCc
Confidence 367899999999998764 4678899999999999994 899999999887 567887532211 0000000112110
Q ss_pred ceEEEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEe
Q 003221 419 HVHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sI-aFSpDg~~Las~S~dGTVhIw~ 459 (838)
.+-+.++. +..+....+| .|.--|..|++|++-+-|.+++
T Consensus 276 v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 276 VKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 01111221 1112222222 2555678899999999888764
No 298
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.023 Score=57.70 Aligned_cols=36 Identities=25% Similarity=0.616 Sum_probs=33.0
Q ss_pred CccccceeEeeeeeEEeccCCc-cccccceeEEEEcCC
Q 003221 684 KSYERSHWYLSNAEVQMSSGRL-PIWQSSKISFFKMDS 720 (838)
Q Consensus 684 ~~~e~~~~~~s~ae~q~~~~~~-piw~~~~~~f~~~~~ 720 (838)
..+|+..| |+.+|+.+|.+++ .|||.|||+|+.+-.
T Consensus 22 ~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~ 58 (247)
T KOG4415|consen 22 IGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE 58 (247)
T ss_pred cCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence 56899999 9999999999998 999999999998765
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.18 E-value=7.8 Score=39.88 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=42.3
Q ss_pred CEEEEEECCCCeEEEEE-eCCC------cEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVL-RFRS------SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL-~f~s------~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|..+|.++|+.+... .... ......+..+.++++. .+.|+++|+.+++.++....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 57999999999999984 4321 1234455577777776 78999999999999888765
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.03 E-value=12 Score=41.60 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=49.8
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
-.+.|-+++|+++|.++|..|-.|..+-+||..+ | +.+-.. .-..++.|+-.+++ |++
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------g----------~~~~~~----~l~D~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-------G----------RLLGSV----PLPDACGVAPTDDG-FLV 272 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-------C----------CEeecc----ccCceeeeeecCCc-eEE
Confidence 3568999999999999999999999999999864 3 233222 11257778877777 554
Q ss_pred EEeCCCeEEEEecCCCC
Q 003221 448 IVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 448 s~S~dGTVhIw~l~~~g 464 (838)
+ |-.| .++.+....
T Consensus 273 s-sG~G--~~~~~~~~~ 286 (305)
T PF07433_consen 273 S-SGQG--QLIRLSPDG 286 (305)
T ss_pred e-CCCc--cEEEccCcc
Confidence 4 4445 355665544
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.03 E-value=14 Score=42.09 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=34.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCc--------EEEE-----EeCCCeEEEEeCCeEEEEECCCCceeeEE
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSS--------VCMV-----RCSPRIVAVGLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~--------V~sV-----~~s~~iLaV~l~~~I~IwD~~t~e~l~tL 227 (838)
+.+..+|.++|+.+...++..+ ...+ -....+++++.++.++++|+.+++.+++.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 6677888888887776543211 0111 11233455566778999999999877653
No 302
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.93 E-value=4.1 Score=50.67 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=43.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
|+.+|.|++||-...+....|.+-..||..|..+.||++|+.... +.+-++++.
T Consensus 594 gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 594 GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 567899999997666677788888899999999999998765553 467788863
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=0.054 Score=65.55 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=68.1
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+-|++|.-.| +++|++. +|.-.+-+..|..+|..|+=.-+ ++ +++..+.
T Consensus 1113 ~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~d-----------gs--~~Ltsss--------------- 1163 (1516)
T KOG1832|consen 1113 TNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVD-----------GS--TQLTSSS--------------- 1163 (1516)
T ss_pred CceEEeeeccceEEEEEcc-CccccccccccccccccccccCC-----------cc--eeeeecc---------------
Confidence 45788888777 9999995 57777888999999998874322 12 3332111
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECC-CCeEEEEEeCCCcEEEEEeCC---CeEEEEeCCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~-tg~~V~tL~f~s~V~sV~~s~---~iLaV~l~~~I~IwD~~t~e~l~tL~t 229 (838)
|. .--..+|++. ++..+|++.- -.+|.|+. +.++.+..+...+||+.|...+.++.+
T Consensus 1164 -------~S---------~PlsaLW~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1164 -------SS---------SPLSALWDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred -------cc---------CchHHHhccccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 11 1135578875 4555665542 23556654 244445557789999999887766543
No 304
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.78 E-value=0.17 Score=60.33 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=75.4
Q ss_pred cCCCceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 345 MDNAGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v-~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
|...|.|.+|.-..+... ....+-++-+..++.|++..++|.|+..| .|-||.+... +. ..+.
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g-~V~v~ql~~~------~p---------~~~~ 114 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG-RVSVFQLNKE------LP---------RDLD 114 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc-eEEeehhhcc------CC---------Ccce
Confidence 456899999998776543 23334556778899999998888888755 5889988531 10 1222
Q ss_pred EEecccc--cccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 424 KLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 424 ~L~RG~t--~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.+.+++. ...|++++||+|++.|.+|.+.|+|+.-.|+.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3334433 56899999999999999999999999988877
No 305
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=93.72 E-value=0.25 Score=64.28 Aligned_cols=117 Identities=12% Similarity=0.179 Sum_probs=85.2
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcc-----cC-----------
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS----------- 406 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~-----~~----------- 406 (838)
+|.+||.|++|.-..++.+..++ +-...|+.+.|+.+|.....+..||. +-+|.+.|-.- ++
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 57899999999999998888776 33488999999999999999999886 99999876321 01
Q ss_pred --------CCCCCccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 407 --------GSGNHKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 407 --------~~G~~~~~~~~----~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
..+.....|.. ....+.+. |...++++++-|.-+.|.+|+.+|.|.|||+.....
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeeee----cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 00101112221 11222322 234589999999999999999999999999987543
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.53 E-value=0.2 Score=55.51 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=70.3
Q ss_pred cCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 345 MDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 345 g~~~G~V~VwDl~s~----~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
|-.+|.|.++|+..+ .-.++---|.+.|++|..=. ++.+|...+.+|+ |++||+.-... + ..
T Consensus 270 GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~----~--------~~ 336 (425)
T KOG2695|consen 270 GCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKC----K--------KS 336 (425)
T ss_pred cccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhc----c--------cc
Confidence 567899999999875 33445556999999987666 7888888888887 99999853100 0 00
Q ss_pred eEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 420 VHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 420 ~~l~~L~RG~t~a-~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
...|+ |+-+. .-.-+-..+....|+++++|--.+||.+...
T Consensus 337 V~qYe---GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 337 VMQYE---GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eeeee---cccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 22333 33221 1111334577888999999999999999863
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.64 E-value=15 Score=38.59 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=61.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
|.|..++.. ++....+ ..-.--+.|+|+|||+.|..+......|..|++... +.. + ...+.+..+..+
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~~---~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GGE---L-SNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TCC---E-EEEEEEEE-SSS
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc------ccc---e-eeeeeEEEcCCC
Confidence 677777777 4433332 234456899999999988766665666888887431 100 0 001222333322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
. ...-.+++..+|+..++.-..+.|++|+-+
T Consensus 183 ~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 183 P--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp S--CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred C--cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1 247789999999988888888888888743
No 308
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.44 Score=56.42 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=60.2
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-cccccccE-EEEEEccCCCEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIAI 448 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG~t~a~I-~sIaFSpDg~~Las 448 (838)
.|-.+.++|.=.++|++-.+|+ +-+.+++ ++++..+- +|. .+ .+++|.|||+.||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n------------------~qRlwtip~p~~---~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLN------------------WQRLWTIPIPGE---NVTASLCWRPDGKLLAV 79 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEec------------------cceeEeccCCCC---ccceeeeecCCCCEEEE
Confidence 4667889999999999999997 5566663 14566664 442 24 49999999999999
Q ss_pred EeCCCeEEEEecCCCCCccc
Q 003221 449 VSSKGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 449 ~S~dGTVhIw~l~~~gg~~~ 468 (838)
|=.||||.|-|++..++...
T Consensus 80 g~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EecCCeEEEEEccCCCceec
Confidence 99999999999998776544
No 309
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.41 E-value=0.35 Score=38.83 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.6
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 431 ~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+.|..++|+|....||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 310
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.39 E-value=8.1 Score=44.99 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=51.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
.|.++|+.++.... +..-.+.-..=.|+|||+.|+-+|..+..-+||..... |. ....+++.-|.
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~------g~--------~~~riT~~~~~ 327 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE------GS--------QVTRLTFSGGG 327 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC------CC--------ceeEeeccCCC
Confidence 46777777655322 32211111245799999999998887776788877543 21 12333433222
Q ss_pred ccccEEEEEEccCCCEEEEEeCC
Q 003221 430 TSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 430 t~a~I~sIaFSpDg~~Las~S~d 452 (838)
.. .-.|||||++|+..+..
T Consensus 328 ~~----~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 328 NS----NPVWSPDGDKIVFESSS 346 (425)
T ss_pred Cc----CccCCCCCCEEEEEecc
Confidence 11 56799999999998854
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.23 E-value=1.3 Score=53.48 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=41.8
Q ss_pred ceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecC
Q 003221 349 GIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 349 G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~ 400 (838)
..|.|||+..+ .++..+++|...|+.+.|+.- -+.+.+++.||+ ++.||-.
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~ 232 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYS 232 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeeccc
Confidence 46999999875 477899999999999999884 456777888676 9999974
No 312
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=92.12 E-value=0.49 Score=51.64 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=70.2
Q ss_pred ccCCCceEEEEECC-CCcEEE-EeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 344 DMDNAGIVVVKDFV-TRAIIS-QFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 344 ~g~~~G~V~VwDl~-s~~~v~-~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
+|+.||.+.-||+. .++.+. ..+-|+..|.++.-+| .+++|||||-|.+ |++||+..- | +
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~----------k 245 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G----------K 245 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------C
Confidence 57889999999998 344443 3678999999988887 5999999999665 999998531 2 3
Q ss_pred EEEEEecccccccEEEEEEccCCC--EEEEEeCCCeEEEEecCCCCCc
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQ--WIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~--~Las~S~dGTVhIw~l~~~gg~ 466 (838)
.+++-.- ...||-|.++|--. .|+++=.+| .+|-+++...++
T Consensus 246 Pl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 246 PLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred ccccCcc---ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence 3443222 24688899888533 344444444 677676655443
No 313
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.11 E-value=0.17 Score=58.62 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=61.0
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
.+..|.+|+..|.+++--.+..-+++||.| +++++|.+.|. +++-| +..+.++... +...|.+|.|=
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkD-KTVKLWSik~E--gD~~~--------tsaCQfTY~a--Hkk~i~~igfL 793 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKD-KTVKLWSIKPE--GDEIG--------TSACQFTYQA--HKKPIHDIGFL 793 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCC-ceEEEEEeccc--cCccc--------cceeeeEhhh--ccCcccceeee
Confidence 357888999999988766667788899995 55999999875 12112 1123344322 34579999999
Q ss_pred cCCCEEEEEeCCCeEEEEe
Q 003221 441 HYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~ 459 (838)
.|-+++++ -||-+|+||
T Consensus 794 ~~lr~i~S--cD~giHlWD 810 (1034)
T KOG4190|consen 794 ADLRSIAS--CDGGIHLWD 810 (1034)
T ss_pred eccceeee--ccCcceeec
Confidence 99988765 588899998
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=0.53 Score=57.12 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=66.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
|...|.|.+++....- .+...|... +-+|.++||||.||+ +.|..+.+. ...+.+.
T Consensus 55 GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~~d 110 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQYD 110 (846)
T ss_pred ccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------ccceeEe
Confidence 5678999999986432 444455444 778999999999997 667776431 1135566
Q ss_pred EecccccccEEEEEEccC-----CCEEEEEeCCCeEEEEecCCCCC
Q 003221 425 LHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpD-----g~~Las~S~dGTVhIw~l~~~gg 465 (838)
+.| .|.+|+++|| ++.+++|+..| +.++.-+-.|.
T Consensus 111 f~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 111 FKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN 150 (846)
T ss_pred cCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence 654 6899999999 88899999999 88876544443
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.41 E-value=1.7 Score=52.36 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=69.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEe---cCCCE-----------EEEEecCC--CcccCC-
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---VYGNN-----------INIFRIMP--SCMRSG- 407 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS---~dGt~-----------IrVwdi~p--~~~~~~- 407 (838)
....++|.+.|..+.++..++.--. ....++|+|||+++++++ +.|.. +.+|++.. ....++
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 3567899999999988888877544 336789999999998885 43333 33333310 000000
Q ss_pred ----CC--CCccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCC
Q 003221 408 ----SG--NHKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFG 464 (838)
Q Consensus 408 ----~G--~~~~~~~~----~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~-dGTVhIw~l~~~g 464 (838)
.+ ....|... ....++.+--| .....|++||||+++.+++. +.||.|.++....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 00 00001000 01223333223 23578999999999877665 7899999998754
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=91.12 E-value=0.6 Score=54.58 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=65.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec----------CCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV----------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~----------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
-|.+|--.+-..++.|. |. .|..+.|||..++|+|=|. +|+.|+||||.+ |
T Consensus 232 GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-------G---------- 292 (698)
T KOG2314|consen 232 GIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-------G---------- 292 (698)
T ss_pred ceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-------c----------
Confidence 37888666655555553 43 5889999999999999764 478899999975 4
Q ss_pred eEEEEEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 420 VHLYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 420 ~~l~~L~--RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..+..|. ++.. ...--..||.|++|+|--..+ +++||.-..+.
T Consensus 293 ~lkrsF~~~~~~~-~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~ 337 (698)
T KOG2314|consen 293 LLKRSFPVIKSPY-LKWPIFRWSHDDKYFARMTGN-SISIYETPSFM 337 (698)
T ss_pred chhcceeccCCCc-cccceEEeccCCceeEEeccc-eEEEEecCcee
Confidence 2222222 1211 112235799999999998885 69999876543
No 317
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.71 E-value=26 Score=37.35 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=29.4
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF 116 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~ 116 (838)
++.|++|.++|+-++++.......+++.... |.-++++|.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~ 46 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE 46 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence 5688899999999999944455555555433 888888864
No 318
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=13 Score=43.98 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=42.5
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
|+.+|.|++||-...+....|++-..+|..+..+.||++|+.... +.+-+-++
T Consensus 447 gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t 499 (644)
T KOG2395|consen 447 GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDT 499 (644)
T ss_pred eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEE
Confidence 567899999998666667888999999999999999997764443 45667776
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.43 E-value=0.81 Score=51.40 Aligned_cols=102 Identities=15% Similarity=0.242 Sum_probs=59.7
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc--CCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~--~~~G~~~~~~~~~~~~l~~L 425 (838)
.+.+.|||+.+++....... ...+....|||+|+.||-... +.|.++++...... ...|. ..++
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~---------~~i~-- 87 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGE---------PGIY-- 87 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--T---------TTEE--
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccc---------eeEE--
Confidence 46799999999765443333 678999999999999999874 56888876431000 00000 0000
Q ss_pred ecccc--------cccEEEEEEccCCCEEEEEeCCCe-EEEEecCCCC
Q 003221 426 HRGIT--------SATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPFG 464 (838)
Q Consensus 426 ~RG~t--------~a~I~sIaFSpDg~~Las~S~dGT-VhIw~l~~~g 464 (838)
.|.. -..=..+.|||||++||....|.+ |+.+.+..+.
T Consensus 88 -nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~ 134 (353)
T PF00930_consen 88 -NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS 134 (353)
T ss_dssp -ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES
T ss_pred -cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC
Confidence 0100 000134779999999998776654 7777765544
No 320
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.39 E-value=0.38 Score=55.66 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=62.9
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 003221 354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (838)
Q Consensus 354 wDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~ 433 (838)
|.-.+...-..+.+-.-|+.+.+|||.|++|++....| |.+|.-.. + ..+..++ ...
T Consensus 17 ~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~-------~----------~~l~~~~----~~~ 73 (561)
T COG5354 17 WNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPS-------K----------AKLVRFR----HPD 73 (561)
T ss_pred ecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccc-------h----------hheeeee----cCC
Confidence 43344444455666778999999999999999887744 88997521 1 2333442 246
Q ss_pred EEEEEEccCCCEEEEEeCCCe---------------EEEEecCCCC
Q 003221 434 IQDICFSHYSQWIAIVSSKGT---------------CHVFVLSPFG 464 (838)
Q Consensus 434 I~sIaFSpDg~~Las~S~dGT---------------VhIw~l~~~g 464 (838)
|+.+.|||.+++|.+-+..+. +.|||+...-
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~ 119 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM 119 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce
Confidence 999999999999999887765 7788876543
No 321
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.95 E-value=28 Score=36.58 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=41.1
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE-ccCCCEEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF-SHYSQWIAIV 449 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF-SpDg~~Las~ 449 (838)
..-.|+++.+|.+.++.-. +..|.+|+.. | +.+.++.-.. ..+++++| -+|.+.|.+.
T Consensus 185 ~pDG~~vD~~G~l~va~~~-~~~I~~~~p~--------G----------~~~~~i~~p~--~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWG-GGRIVVFDPD--------G----------KLLREIELPV--PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEBTTS-EEEEEET-TTEEEEEETT--------S----------CEEEEEE-SS--SSEEEEEEESTTSSEEEEE
T ss_pred CCCcceEcCCCCEEEEEcC-CCEEEEECCC--------c----------cEEEEEcCCC--CCEEEEEEECCCCCEEEEE
Confidence 3677999999998876555 4558888752 4 3555554332 26899999 5788888877
Q ss_pred eC
Q 003221 450 SS 451 (838)
Q Consensus 450 S~ 451 (838)
+.
T Consensus 244 ta 245 (246)
T PF08450_consen 244 TA 245 (246)
T ss_dssp EB
T ss_pred eC
Confidence 64
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=47 Score=41.45 Aligned_cols=82 Identities=11% Similarity=0.214 Sum_probs=53.5
Q ss_pred ceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~-~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.+|.+.... ....+..|.-+++|-+|++.-. ++++++. .+.+|+.. |. .+.+.|.
T Consensus 193 ~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~sd--------~~---------~~cfaf~ 252 (933)
T KOG2114|consen 193 EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDSD--------GR---------GPCFAFE 252 (933)
T ss_pred ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcCC--------Cc---------ceeeeec
Confidence 357888887544 2455788999999999998655 5555554 58899873 21 3556776
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCe
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGT 454 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGT 454 (838)
+|.+.- +-|..-|..|++....||
T Consensus 253 ~g~kk~----~~~~~~g~~L~v~~~~~~ 276 (933)
T KOG2114|consen 253 VGEKKE----MLVFSFGLLLCVTTDKGT 276 (933)
T ss_pred CCCeEE----EEEEecCEEEEEEccCCC
Confidence 665421 333334677777766664
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.09 E-value=32 Score=44.35 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=74.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC--CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|+|||-. +..-.+-..-..-=.+|+|=|+|.++|+--.+ +..|.+|.-+ |-. +--+.++
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--------GL~--------hg~f~l~ 284 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--------GLR--------HGEFVLP 284 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--------Ccc--------ccccccC
Confidence 689999987 33222212222223579999999999985432 2247777642 310 0112222
Q ss_pred cccccccEEEEEEccCCCEEEE---EeCCCeEEEEecCCCCCccccccCCCCCCCCcccCccCCCcccCCCCccccccc-
Q 003221 427 RGITSATIQDICFSHYSQWIAI---VSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV- 502 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las---~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~~~lp~~~~s~~~~~q~~~- 502 (838)
.-.....|..|+|+.++..||+ .....-|.+|-+..| -||++-+|.+.|...
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny------------------------hWYLKq~l~~~~~~~~ 340 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY------------------------HWYLKQELQFSQKALL 340 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCe------------------------EEEEEEEEeccccccc
Confidence 2111123899999999999999 444445999998754 277777777777555
Q ss_pred --CCCCCeeeeee
Q 003221 503 --LPPPPVTLSVV 513 (838)
Q Consensus 503 --~~~~~~~l~~v 513 (838)
-|-.+.+|.+.
T Consensus 341 ~W~p~~~~~L~v~ 353 (1265)
T KOG1920|consen 341 MWDPVTEKTLHVL 353 (1265)
T ss_pred cccCCCceeEEEE
Confidence 33445566654
No 324
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.95 E-value=1 Score=36.26 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
..+|.+++|+|...+||.++.+|. |.||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 357999999999999999999887 889998
No 325
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=88.86 E-value=1.6 Score=50.65 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=63.8
Q ss_pred ceEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..+.++|+.+++ .+..+.+|.. .-+|+|||++||-++..+....||-+.-. + ..+.+|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~------~----------~~~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD------G----------KNLPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC------C----------Ccceecc
Confidence 468999998865 4555666554 46899999999988876555666644211 2 1233444
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCCCCcc
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFGGDS 467 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dG-TVhIw~l~~~gg~~ 467 (838)
.+.... ..=+|||||++|+-.|+++ .-.||-++..++..
T Consensus 279 ~~~gi~--~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 279 NGFGIN--TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccc--cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 433222 2567999999999888775 45677766665543
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.86 E-value=0.96 Score=55.15 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=70.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCC--eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSP--ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~sp--IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
+....|.|.||- .+|++-... +.| +++|||.|.--+||.+=..| .+.||...+ ..
T Consensus 36 S~er~GSVtIfa-dtGEPqr~V---t~P~hatSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e 92 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDV---TYPVHATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TE 92 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCccc---ccceehhhhccChHHHHHhhccccc-eeEEEecCC------------------ce
Confidence 455678888883 344432222 123 35699999998999887766 499998743 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
.+..- -.+.+.|+-+.||+||..|+++..=|.||+|.....|.
T Consensus 93 ~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 93 THTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred eeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 23322 23668899999999999999999999999999986644
No 327
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=88.60 E-value=1.3 Score=49.33 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=54.4
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc-------------cc-cccEE
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-------------IT-SATIQ 435 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG-------------~t-~a~I~ 435 (838)
.-|+++.|+.+|.+||||...|+ +-+|.-.... + +.|.+... .. ...|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~--~--------------~ey~~~t~fqshepEFDYLkSleieEKin 88 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKLY--K--------------GEYNFQTEFQSHEPEFDYLKSLEIEEKIN 88 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeeccccc--c--------------cceeeeeeeeccCcccchhhhhhhhhhhh
Confidence 45899999999999999999776 6677643210 0 11111110 00 12588
Q ss_pred EEEEccCCC--EEEEEeCCCeEEEEecCCCCCc
Q 003221 436 DICFSHYSQ--WIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 436 sIaFSpDg~--~Las~S~dGTVhIw~l~~~gg~ 466 (838)
.|.|-+++. .+..++.|.|+++|.+...+..
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccc
Confidence 899998865 4677888999999999776543
No 328
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=88.50 E-value=8.1 Score=43.89 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=43.1
Q ss_pred cCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
++.|+.|+|-.+..--.+..|. +|+.-|+.|+.-++ .+|+++|-|+| +|+||+..
T Consensus 169 aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~s 224 (390)
T KOG3914|consen 169 ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITS 224 (390)
T ss_pred ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEeccc
Confidence 4677888887776655566665 79999999999775 56889999776 99999964
No 329
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.50 E-value=72 Score=40.59 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=66.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
...|++|+..+.+.+..=..|..++.+|...-.|..+|.|+.-+. |.+-.-... .| .+++.-|
T Consensus 847 n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-----------~f~evAr 909 (1096)
T KOG1897|consen 847 NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-----------NFEEVAR 909 (1096)
T ss_pred CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-----------ceEEeeh
Confidence 357999999988777777789999999999999999999987443 554433221 02 3566666
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
-..+.++..+.+=.|..+ +.+...|.+.+-..+
T Consensus 910 D~~p~Wmtaveil~~d~y-lgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 910 DYNPNWMTAVEILDDDTY-LGAENSGNLFTVRKD 942 (1096)
T ss_pred hhCccceeeEEEecCceE-EeecccccEEEEEec
Confidence 555556777777655544 455667766666554
No 330
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.20 E-value=86 Score=39.92 Aligned_cols=84 Identities=12% Similarity=0.138 Sum_probs=50.7
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEecCC-------------CEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 363 SQFKAHTSPISALCFDPSGTLLVTASVYG-------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 363 ~~~~aH~spIsaLaFSPdGtlLATAS~dG-------------t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
.++.-| .+...+++.+...++++.+... +.++|+|-++ .+.-+.++|.+--
T Consensus 709 rtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT---------------f~vl~~hef~~~E 772 (1096)
T KOG1897|consen 709 RTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT---------------FEVLSSHEFERNE 772 (1096)
T ss_pred eeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc---------------eeEEeeccccccc
Confidence 344444 3457788888666666554321 2356666432 1224556665544
Q ss_pred ccccEEEEEEccC-CCEEEEEeC----------CCeEEEEecCC
Q 003221 430 TSATIQDICFSHY-SQWIAIVSS----------KGTCHVFVLSP 462 (838)
Q Consensus 430 t~a~I~sIaFSpD-g~~Las~S~----------dGTVhIw~l~~ 462 (838)
+...|.++.|..| +.++++|+. .|-++||.++.
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 4446777789999 888998864 36677777765
No 331
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.84 E-value=16 Score=38.89 Aligned_cols=48 Identities=13% Similarity=-0.083 Sum_probs=39.4
Q ss_pred CCeEE--EEEeCCCcEEEEEeCCCeEEEEeCCeEEEEECCCCceeeEEee
Q 003221 182 SHCYE--HVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 182 tg~~V--~tL~f~s~V~sV~~s~~iLaV~l~~~I~IwD~~t~e~l~tL~t 229 (838)
.|+.. ..+++.+...++.+...+|.+..++.|.||++.+++..+++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 45444 3778888889999988888888889999999999998888764
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=1.6 Score=49.44 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=44.3
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC---eEEEEeCC-eEEEEECCCCce
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---IVAVGLAT-QIYCFDALTLEN 223 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~---iLaV~l~~-~I~IwD~~t~e~ 223 (838)
.++++|.|+++...+.++..+..+++.+++.+ .|-.|+.+ .|+|||++..+.
T Consensus 215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 37999999999999999998999999999765 67777754 699999997654
No 333
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=1.7 Score=51.73 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=48.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIs-aLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
+..+|.|.+.-+. -+.+.+|.-|..++. +|||.|||++||.|=.||+ |++-|+..
T Consensus 38 ~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~ 93 (665)
T KOG4640|consen 38 RTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK 93 (665)
T ss_pred eccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence 4568899999887 677889998888888 9999999999999999886 99999965
No 334
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=87.15 E-value=0.76 Score=49.49 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=62.2
Q ss_pred ceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 349 GIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 349 G~V~VwDl~s~~~v-~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
+..++|++.-.+.+ ...++- ..|.+|+-+|.-..|+.++.++..+-+||... +. . ..-+++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-------~~--~-----p~S~l~--- 220 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-------VA--M-----PVSLLK--- 220 (319)
T ss_pred cceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEccc-------cc--c-----hHHHHH---
Confidence 45677777644322 122222 34999999997666655555566799999853 10 0 011122
Q ss_pred ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCC
Q 003221 428 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 428 G~t~a~I~sIaFSp-Dg~~Las~S~dGTVhIw~l~~ 462 (838)
.+.+.|+.|-|.| ++..|.+++.||.+.-|+-+.
T Consensus 221 -ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 -AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2346799999997 578999999999999998764
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.94 E-value=16 Score=41.56 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEe-CCCeEEEEeCCeEEEEECCCCceeeE
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALTLENKFS 226 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~-s~~iLaV~l~~~I~IwD~~t~e~l~t 226 (838)
.+.+.-+|.++|+.+...++.+.. .+.. ..+++++..+++++++|+.+++.+++
T Consensus 265 ~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 265 NGNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 467788889999888777665422 2233 33455556677899999999877654
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=86.75 E-value=1.3 Score=52.33 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=44.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (838)
|-.||.|++||...+. +++.-+.-..+.++++|+|.+++.|+..|- |.+||+.-+
T Consensus 277 GC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred EecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 5679999999997653 333344556788999999999999999886 999998653
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=86.25 E-value=78 Score=37.38 Aligned_cols=57 Identities=14% Similarity=-0.037 Sum_probs=39.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-------E--EEEEeCC-CeEEE-EeCCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSS-------V--CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~-------V--~sV~~s~-~iLaV-~l~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.-.|.++|+.+...+.... + ..+.... +.|.+ ..++.|+.+|+.|++.+++...
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5688889999998887765432 1 1223333 54554 4567899999999999887654
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.07 E-value=7.8 Score=36.92 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=45.2
Q ss_pred eEEEEECC---CC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 372 ISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 372 IsaLaFSP---dG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
|++|++.. || .-|+.||+ +..||||+-. ..+++... ...|.+|+=... ..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~-D~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD-DFEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA 57 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC-CcEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence 45555544 43 46777887 4569999852 46777653 346888877766 5689
Q ss_pred EEeCCCeEEEEec
Q 003221 448 IVSSKGTCHVFVL 460 (838)
Q Consensus 448 s~S~dGTVhIw~l 460 (838)
.+..+|||-||+-
T Consensus 58 Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 58 YALANGTVGVYDR 70 (111)
T ss_pred EEecCCEEEEEeC
Confidence 9999999988864
No 339
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.57 E-value=1.6 Score=52.58 Aligned_cols=98 Identities=16% Similarity=0.306 Sum_probs=69.1
Q ss_pred cCCCceEEEEECCC---------------CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCC
Q 003221 345 MDNAGIVVVKDFVT---------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 409 (838)
Q Consensus 345 g~~~G~V~VwDl~s---------------~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G 409 (838)
|..+|.++|..+.+ ...-.++.+|...|.-+.|+.+.+.|-|.+.+| .|.||-+-. |
T Consensus 32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlyk-------g 103 (1189)
T KOG2041|consen 32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYK-------G 103 (1189)
T ss_pred ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeec-------c
Confidence 44567777766643 123357889999999999999999998888866 699997742 2
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 410 ~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
. |- +.+.. .| ....|.+++|..||+.|++.-.||.|.|=.+
T Consensus 104 s----W~---EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 104 S----WC---EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred c----HH---HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 1 10 11111 12 2346999999999999999999988765444
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.72 E-value=33 Score=42.43 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=37.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC-------eEEEEeCCeEEEEECC
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-------IVAVGLATQIYCFDAL 219 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~-------iLaV~l~~~I~IwD~~ 219 (838)
++|.|-.+-+.+..+++.|.-++.+|+++|+ .+++|....+.++.=.
T Consensus 93 Gkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~ 146 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERN 146 (846)
T ss_pred CcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhh
Confidence 7899999999999999999999999999986 3445444336666533
No 341
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=84.68 E-value=1.7 Score=48.60 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+..|-+-|++++- -..|. ..+.|.++.|.-.+.++..+-..|. |-+.|+... + .| ..++...|.
T Consensus 232 ~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~r---n-qG--------~~~~a~rly 296 (425)
T KOG2695|consen 232 LSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCR---N-QG--------NGWCAQRLY 296 (425)
T ss_pred ccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeec---c-cC--------CCcceEEEE
Confidence 45567888888764 23444 6788999999999999998888776 788898642 1 11 113555554
Q ss_pred cccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCC---ccccccCC
Q 003221 427 RGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGG---DSGFQTLS 473 (838)
Q Consensus 427 RG~t~a~I~sIaFSp-Dg~~Las~S~dGTVhIw~l~~~gg---~~~~~~H~ 473 (838)
- ...|+++..=. ++++|++++.+|+|++||+...+. .....+|.
T Consensus 297 h---~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 297 H---DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred c---CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 2 33466655444 679999999999999999876655 44456663
No 342
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.05 E-value=6.5 Score=47.71 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=56.6
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE--EE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~--~L 425 (838)
...+.+++... .....+.+. .++.-.|+|||+.|++.+......++.+-.. .+ .++ .+
T Consensus 378 ~s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~g-----------ql~~~~v 437 (591)
T PRK13616 378 ASSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TG-----------QLARTPV 437 (591)
T ss_pred ceEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cc-----------eEEEEec
Confidence 34677777532 222222332 3778899999999999986435455544211 11 222 22
Q ss_pred eccc----ccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 426 HRGI----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 426 ~RG~----t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..|. -...|.++.|||||++||... +|.|+|=.|..
T Consensus 438 d~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 438 DASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred cCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 1111 123599999999999999877 57777755544
No 343
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.95 E-value=3.5 Score=47.47 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCceEEEEECCCCc-EEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc-ceEEE
Q 003221 347 NAGIVVVKDFVTRA-IISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHLY 423 (838)
Q Consensus 347 ~~G~V~VwDl~s~~-~v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~-~~~l~ 423 (838)
.+|.+.|+|-.... ....++ -|.+||..+.++|.|.-..+....| .|.-|.....+.... + ..+|.-. -.-||
T Consensus 120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr-~--~l~~~~K~eTdLy 195 (558)
T KOG0882|consen 120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPR-T--NLNFELKHETDLY 195 (558)
T ss_pred cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCcc-c--cccccccccchhh
Confidence 46778888876543 344444 5999999999999999999888845 699998753111000 0 0111110 01233
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
.+-.. .....++.|||||..+++-+.|.+|++|.+....-.
T Consensus 196 ~f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 196 GFPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ccccc--ccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 33221 125789999999999999999999999998765433
No 344
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=1.3 Score=55.58 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=57.7
Q ss_pred EEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCC
Q 003221 375 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 375 LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t-~a~I~sIaFSpDg~~Las~S~dG 453 (838)
++---.+..+|.++.+|+ +-.+|.. | -+..+.+|.. ..+|.+++|+.||+.++.|-.+|
T Consensus 93 ~s~a~~~~~ivi~Ts~gh-vl~~d~~--------~-----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G 152 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGH-VLLSDMT--------G-----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDG 152 (1206)
T ss_pred eeeeeeeeeEEEEcCchh-hhhhhhh--------c-----------ccchhhcCCccCCcceeeEecCCCceeccccCCC
Confidence 333335778898888787 5677763 2 1222444432 24799999999999999999999
Q ss_pred eEEEEecCCCCCccccccCCCC
Q 003221 454 TCHVFVLSPFGGDSGFQTLSSQ 475 (838)
Q Consensus 454 TVhIw~l~~~gg~~~~~~H~~~ 475 (838)
-|.+||+...+....+..|.++
T Consensus 153 ~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 153 HVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred cEEEEEccCCcceeeeeecCCc
Confidence 9999999886665555555443
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.58 E-value=94 Score=36.03 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=38.2
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEEEeCCeEEEEECCC
Q 003221 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLATQIYCFDALT 220 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~l~~~I~IwD~~t 220 (838)
|..|+||+. .|+.+.++.+. +.|..+.|+.+ +|+|..++.+++||+..
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 457999998 56777888775 68999999765 66667778899999873
No 346
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.03 E-value=13 Score=43.15 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCC---cEEEEEeCCC------eEEEEeCCeEEEEE
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPR------IVAVGLATQIYCFD 217 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s---~V~sV~~s~~------iLaV~l~~~I~IwD 217 (838)
.+++.|||+++++.++++.+.. ..+.|+|-.+ ++.+++..+|..|-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 4899999999999999999863 5789999543 66677777777664
No 347
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=82.76 E-value=5.7 Score=44.50 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC---------------------Cccc-
Q 003221 357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN---------------------HKYD- 414 (838)
Q Consensus 357 ~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~---------------------~~~~- 414 (838)
.....+....+|..+|.++-|+-.-+++++++.|-. -.|..... ++..|. .+..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~--~~~hc~e~--~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv 177 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ--FAWHCTES--GNRLGGYNFETPASALQFDALYAFVGDHSGQI 177 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc--eEEEeecc--CCcccceEeeccCCCCceeeEEEEecccccce
Confidence 334456667789999999999999999999888432 35654321 110010 0000
Q ss_pred ----c-CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc-cccccCCCCC
Q 003221 415 ----W-NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD-SGFQTLSSQG 476 (838)
Q Consensus 415 ----~-~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~-~~~~~H~~~~ 476 (838)
. ......++++ +|++ ..|.+++|.+-.+.|.++..|..+.+|+|.-..+. ..+++|+..+
T Consensus 178 t~lr~~~~~~~~i~~~-~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTF-NGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred EEEEEeecCCceEEEE-cCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 0 0011223333 3543 46999999999999999999999999999776654 3557776543
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.63 E-value=1e+02 Score=36.19 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=37.8
Q ss_pred CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 381 GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
|.+|...+. + .|.+||... + ..+.+.. -..|..|.||+||+++|..+.+ ++.|++.
T Consensus 117 G~LL~~~~~-~-~i~~yDw~~-------~----------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-D-FICFYDWET-------G----------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-T-EEEEE-TTT-------------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-C-CEEEEEhhH-------c----------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 999988876 3 599999964 2 3555543 2248999999999999999866 6788775
Q ss_pred CC
Q 003221 461 SP 462 (838)
Q Consensus 461 ~~ 462 (838)
+.
T Consensus 173 ~~ 174 (443)
T PF04053_consen 173 NL 174 (443)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=81.55 E-value=95 Score=34.69 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=37.4
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
.|.|..+|. .+..+..+..|-.-=+.|+|||||+.|..+......|.-|++.
T Consensus 142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 355555554 4566666666555557899999999999998876767777764
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.51 E-value=15 Score=46.05 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCceEEEEECCCC--cEEE-Eec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 347 NAGIVVVKDFVTR--AIIS-QFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 347 ~~G~V~VwDl~s~--~~v~-~~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
.+..+.-||.+-. +++. +.+ ......+|++-+.+| +||.||.+|. ||+||-. |. .
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~~--------g~----------~ 609 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGD-IRLYDRL--------GK----------R 609 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCc-EEeeccc--------ch----------h
Confidence 4556777887642 2221 121 345678999999999 6888999897 9999842 31 1
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
-.++.-|. ..+|..|.-+.||+||++.+.. -+.|++..
T Consensus 610 AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 610 AKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred hhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEEe
Confidence 11222232 2479999999999999887766 46666653
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.46 E-value=4.1 Score=51.35 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=38.6
Q ss_pred cCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 345 MDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 345 g~~~G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
+...|.|-..|.... ....+=..-++||++++|+.||++|+.|=.+|. |.|||+..
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~ 161 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHR 161 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccC
Confidence 344566666666542 111111223679999999999999998888776 99999964
No 352
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.09 E-value=1 Score=55.21 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=78.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC-EEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt-~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
.|...|.|++|++.+|.......+|.++|+-+.=+.||.++.|.|.-.. ..-+|++... | ...
T Consensus 1118 vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~~ 1181 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GPR 1181 (1516)
T ss_pred eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Ccc
Confidence 3677899999999999999999999999999999999999888775333 4568887321 2 233
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+.|+ + -.++.||...++-+.|+....++|||+.+...
T Consensus 1182 Hsf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1182 HSFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred cccc-c-----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 3442 2 24688999988889999999999999987543
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=80.00 E-value=25 Score=40.19 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=66.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec--CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~--dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
+..|.+.|..+.+.+..+.--. --..++|+|+|+.+..+.. ....+-++|.... ..+.+.
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-----------------~~~~~~ 156 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-----------------KVTATI 156 (381)
T ss_pred CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC-----------------eEEEEE
Confidence 5789999988777665554322 3467999999988887777 2456777776431 344445
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP 462 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~ 462 (838)
..|... ..++|+|||+.+.+.. .++++.+++...
T Consensus 157 ~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 157 PVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred ecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 566533 7899999999666655 788999999543
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=78.81 E-value=1.5e+02 Score=35.15 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=41.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE-------EEEEeCCCeEEEEe----------CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSV-------CMVRCSPRIVAVGL----------ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V-------~sV~~s~~iLaV~l----------~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.-+|.++|+.+...+....+ .+..+..++++++. .+.++.+|+.|++.+++...
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 67889999999999888765541 12223335565543 45799999999999998765
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=78.59 E-value=4.1 Score=43.35 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=64.4
Q ss_pred cCCCceEEEEECCCC-cEEEEeccCCCCeEEE-EECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 345 MDNAGIVVVKDFVTR-AIISQFKAHTSPISAL-CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 345 g~~~G~V~VwDl~s~-~~v~~~~aH~spIsaL-aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
|..+|.|.+|...-. ...-.+..-..+|.++ .--.++.+..++..+|. ||-|++.|+ +++
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~-----------------k~~ 137 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPN-----------------KVL 137 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccC-----------------cee
Confidence 567899999887521 1111111122344442 23335567777777665 999999873 222
Q ss_pred EEEeccccc-ccEEEEEEccCCCEEEEE--eCCCeEEEEecCCCCCcc
Q 003221 423 YKLHRGITS-ATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 423 ~~L~RG~t~-a~I~sIaFSpDg~~Las~--S~dGTVhIw~l~~~gg~~ 467 (838)
- .+|.++ ..+..+.-+..+++|+.+ |.+.+++.|++++.....
T Consensus 138 g--~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 138 G--YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred e--eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 1 244444 566667777778888888 888899999988765543
No 356
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.37 E-value=12 Score=45.62 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=66.2
Q ss_pred EEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 361 IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
+--.+.+|+..|+.+.|+|. -..|||++. ++.+..||+... ...+|.+.--.+. -.-+.|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsv-dt~vh~wd~rSp----------------~~p~ys~~~w~s~--asqVkw 166 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSV-DTYVHAWDMRSP----------------HRPFYSTSSWRSA--ASQVKW 166 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccc-cccceeeeccCC----------------Ccceeeeeccccc--Cceeee
Confidence 34566789999999999997 568999999 567999998531 1345554321122 245788
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCCCCc-cccccCCCCC
Q 003221 440 SHYSQWIAIVSSKGTCHVFVLSPFGGD-SGFQTLSSQG 476 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~l~~~gg~-~~~~~H~~~~ 476 (838)
+--.-.+.+++...-|.||++...+-+ ..+.+|.+.+
T Consensus 167 nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 167 NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred cccCcchhhhccCCceEEEeccCCCcceEEecccceee
Confidence 866556667777778999998654432 3456776544
No 357
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.81 E-value=9.3 Score=47.23 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=74.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEecCCC----EEEEEecCCCcccCCCCCCccccCCcc
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~sp-IsaLaFSPdGtlLATAS~dGt----~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
|+.+|.|.+++- +.+.+..|++|... |..|-...+-.+|++-.+|+. .++||++.+.. .+ .+.
T Consensus 41 gt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-~n----------~sP 108 (933)
T KOG2114|consen 41 GTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-KN----------NSP 108 (933)
T ss_pred eeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-CC----------CCc
Confidence 466888888764 34556889999888 677766666689999999887 79999997531 11 012
Q ss_pred eEEEEEe-----cccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 420 VHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 420 ~~l~~L~-----RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
+++|+.+ -+....++.+|+.|.|=+.+|+|=.+|+|..+.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 3444332 233344789999999999999999999998875
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.47 E-value=5.3 Score=45.02 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=43.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC---eE-EEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---IV-AVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~---iL-aV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|=+||+++++.+..+....++.+|..+.+ +| ++.. ++.+++||+.|++.+.++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 5688899999999999999888988888764 44 4444 45799999999999888764
No 359
>PRK02888 nitrous-oxide reductase; Validated
Probab=77.45 E-value=18 Score=44.00 Aligned_cols=106 Identities=8% Similarity=0.036 Sum_probs=70.3
Q ss_pred CceEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 348 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 348 ~G~V~VwDl~s-----~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
++.|.|.|..+ .+.+..+.--.+ ...+++||||++++.++.....+-|+|+...... -.+. .+... ...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~-~~~~--~~~~~--~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL-FDGK--IKPRD--AVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCC-ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh-hhcc--CCccc--eEE
Confidence 46799999988 456666654333 3679999999999999987778999999642000 0000 00111 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.+..-|.. -.-.+|.++|.-..+--.|..|-.|++..
T Consensus 369 aevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23333432 24578999999888888899999999976
No 360
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.57 E-value=34 Score=42.65 Aligned_cols=91 Identities=15% Similarity=0.373 Sum_probs=56.1
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc-CC---CCCCccccCCcceEEE-EEecccccccEEEEEEccC-
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR-SG---SGNHKYDWNSSHVHLY-KLHRGITSATIQDICFSHY- 442 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~-~~---~G~~~~~~~~~~~~l~-~L~RG~t~a~I~sIaFSpD- 442 (838)
...|..|.+||+|++||-++..| |-|-.+ |..-+ ++ .|........ ..+- .+.+......|..+.|.|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~--v~V~~L-P~r~g~~~~~~~g~~~i~Crt--~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG--VVVLEL-PRRWGKNGEFEDGKKEINCRT--VPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc--EEEEEe-ccccCccccccCCCcceeEEE--EEechhhccCCCCceEEEEEEcCCC
Confidence 34678899999999999999865 555555 32100 10 1110000000 0000 1122223457999999987
Q ss_pred --CCEEEEEeCCCeEEEEecCCCC
Q 003221 443 --SQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 443 --g~~Las~S~dGTVhIw~l~~~g 464 (838)
+..|++=++|+++++|++....
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCC
Confidence 4899999999999999996543
No 361
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=74.10 E-value=8.3 Score=30.62 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEEEEccCCC---EEEEEeCCCeEEEEecCC
Q 003221 434 IQDICFSHYSQ---WIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 434 I~sIaFSpDg~---~Las~S~dGTVhIw~l~~ 462 (838)
|.++.|||++- .|+.+-..|-|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998654 899999999999999973
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=73.38 E-value=24 Score=40.82 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=54.7
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe------cccccccE
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH------RGITSATI 434 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~------RG~t~a~I 434 (838)
....+....++|++|+.|.=| ++|.|.++|+ +-|.|++ |. ..+|.-. .......|
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~R--------GP---------avI~~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLR--------GP---------AVIYNENIRESFLSKSSSSYV 138 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETT--------TT---------EEEEEEEGGG--T-SS----E
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECC--------CC---------eEEeeccccccccccccccCe
Confidence 445566668999999998767 8999999775 8899994 31 3444421 11233468
Q ss_pred EEEEEc-----cCC---CEEEEEeCCCeEEEEecCC
Q 003221 435 QDICFS-----HYS---QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 435 ~sIaFS-----pDg---~~Las~S~dGTVhIw~l~~ 462 (838)
++|.|+ .|+ =.|.+|++.|++.+|+|-+
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 889887 343 4789999999999999975
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=73.08 E-value=28 Score=38.85 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCeEEEEECCCCCEEEEEec---CCC-----EEEEEecCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEc
Q 003221 370 SPISALCFDPSGTLLVTASV---YGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFS 440 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~---dGt-----~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG-~t~a~I~sIaFS 440 (838)
...+.+..+|+|.+-++... .+. .-+||.+.|. | ++.++..+ .. .=..|+||
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~------g-----------~~~~l~~~~~~--~~NGla~S 171 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD------G-----------GVVRLLDDDLT--IPNGLAFS 171 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC------C-----------CEEEeecCcEE--ecCceEEC
Confidence 34577899999998887655 111 1246666542 2 22233222 11 23579999
Q ss_pred cCCCEEEEEeC-CCeEEEEecCCCCC
Q 003221 441 HYSQWIAIVSS-KGTCHVFVLSPFGG 465 (838)
Q Consensus 441 pDg~~Las~S~-dGTVhIw~l~~~gg 465 (838)
||++.|..+-. .+.+|-|++.+..+
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g 197 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATG 197 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccC
Confidence 99977666544 48899999986443
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=70.79 E-value=1.2e+02 Score=33.93 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=38.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLE 222 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e 222 (838)
..+-+||+.+++..........+....++|+ .||...++.|+++++.+++
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 5789999999876543333567888888875 8999999999999998874
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=70.37 E-value=25 Score=42.83 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=61.1
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE---EE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL---YK 424 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l---~~ 424 (838)
.+.+.+.++..+.... .....|..+.|||||+.||--.. |+ |.|=-+... ..|. ..+ .+
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~-v~Va~Vvr~----~~G~---------~~l~~~~~ 490 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GK-VYLAVVEQT----EDGQ---------YALTNPRE 490 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CE-EEEEEEEeC----CCCc---------eeecccEE
Confidence 4566666776554432 33568999999999999998774 54 556333221 1131 122 22
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
+..+.. ..+.++.|..|++. +++..++...+|.++..|..
T Consensus 491 l~~~l~-~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 491 VGPGLG-DTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred eecccC-CccccceEecCCEE-EEEecCCCCceEEEecCCcc
Confidence 322222 13578999999995 56666777778888766543
No 366
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.87 E-value=14 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=21.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCC--CEEEEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYG--NNINIF 397 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dG--t~IrVw 397 (838)
.....-..-+|||||+.|+-++..+ ....||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999999888765 445555
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.53 E-value=37 Score=37.67 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=33.7
Q ss_pred CCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 003221 347 NAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTAS 388 (838)
Q Consensus 347 ~~G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSPdGtlLATAS 388 (838)
.-|.|-|||...+ +.+..|..|.----.|.+.+||++|+.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3588999999853 46778888866667789999999999886
No 368
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=69.35 E-value=11 Score=29.97 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCeEEEEECCC-C--CEEEEEecCCCEEEEEecC
Q 003221 370 SPISALCFDPS-G--TLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 370 spIsaLaFSPd-G--tlLATAS~dGt~IrVwdi~ 400 (838)
+.|.++.|||+ + .+||-+-..|. |.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcc
Confidence 36889999985 4 59998877676 9999996
No 369
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.34 E-value=9.6 Score=28.49 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCEEEEEeCC---CeEEEE
Q 003221 433 TIQDICFSHYSQWIAIVSSK---GTCHVF 458 (838)
Q Consensus 433 ~I~sIaFSpDg~~Las~S~d---GTVhIw 458 (838)
.....+|||||++|+-++.+ |.-+||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 46778999999999888877 556666
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.86 E-value=43 Score=38.17 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=59.3
Q ss_pred ccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEecCC----------CEEEEEecCCCcccCCCCCCc
Q 003221 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~-~~aH~spIsaLaFSPdGtlLATAS~dG----------t~IrVwdi~p~~~~~~~G~~~ 412 (838)
.|+....++|+|+.+++.+.. |..- .-..++|.+||+.|.-...+. ..|..|++-+ +
T Consensus 145 ~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt-------~--- 212 (414)
T PF02897_consen 145 GGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT-------P--- 212 (414)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-----------
T ss_pred CCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC-------C---
Confidence 345557799999999987653 2321 112399999998877665432 3355666522 1
Q ss_pred cccCCcceEEEEEeccccccc-EEEEEEccCCCEEEEEeCCCe--EEEEecCC
Q 003221 413 YDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGT--CHVFVLSP 462 (838)
Q Consensus 413 ~~~~~~~~~l~~L~RG~t~a~-I~sIaFSpDg~~Las~S~dGT--VhIw~l~~ 462 (838)
......+++-. .... ..++..|+|++||++.+.+++ -.||-+..
T Consensus 213 ---~~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 213 ---QSEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp ---GGG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred ---hHhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 01113444432 2223 678999999999987666554 35555444
No 371
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.28 E-value=99 Score=30.64 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=45.5
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEe------CCCeEEEEeCCeEEEEECCCCceeeEEe
Q 003221 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRC------SPRIVAVGLATQIYCFDALTLENKFSVL 228 (838)
Q Consensus 171 ~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~------s~~iLaV~l~~~I~IwD~~t~e~l~tL~ 228 (838)
+++.+..||...+..+---+.+..|.+|.+ ...++.|+..-.|+.||....|..+++.
T Consensus 71 t~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 71 TQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 457899999998877766677788888877 2347777777789999998888877764
No 372
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=67.20 E-value=27 Score=38.92 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
...+..+..++||+++|.++. |..+.-||- |. +..+.+. |. +...|++|.|+||+...++
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~---------G~-------~~w~~~~--r~-~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSR-GNFYSSWDP---------GQ-------TTWQPHN--RN-SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETT-SSEEEEE-T---------T--------SS-EEEE-----SSS-EEEEEE-TTS-EEEE
T ss_pred cceeEeEEECCCCcEEEEECc-ccEEEEecC---------CC-------ccceEEc--cC-ccceehhceecCCCCEEEE
Confidence 367888999999999988866 997777764 31 1123333 43 3457999999999876665
Q ss_pred EeCCCeEEEEe
Q 003221 449 VSSKGTCHVFV 459 (838)
Q Consensus 449 ~S~dGTVhIw~ 459 (838)
+ ..|-++.=+
T Consensus 204 ~-~Gg~~~~s~ 213 (302)
T PF14870_consen 204 A-RGGQIQFSD 213 (302)
T ss_dssp E-TTTEEEEEE
T ss_pred e-CCcEEEEcc
Confidence 4 666666544
No 373
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=67.05 E-value=6.2 Score=47.77 Aligned_cols=95 Identities=15% Similarity=0.270 Sum_probs=67.5
Q ss_pred ccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
+.+.+|.|.||=+-.+.-...+. -..+-|.+++|+.||+.++.+=+||.+ .|=.+. |. .
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav-IVGsvd--------GN----------R 148 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV-IVGSVD--------GN----------R 148 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE-EEEeec--------cc----------e
Confidence 35779999999987765332222 245778999999999999999998874 454442 21 1
Q ss_pred EE--EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 422 LY--KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 422 l~--~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
++ +| .|.. ...+.||+|.+.+..+-..|.+|+|+..
T Consensus 149 IwgKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 149 IWGKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ecchhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 11 22 2332 3457799999999999999999999864
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.84 E-value=25 Score=40.00 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=45.7
Q ss_pred CeEEEEECCCCCEEEEE-ecCC---CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 371 PISALCFDPSGTLLVTA-SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 371 pIsaLaFSPdGtlLATA-S~dG---t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
.+...++||||++||-+ +..| ..|+|+|+.. | +.+-..-.+ ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-------g----------~~l~d~i~~---~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-------G----------KFLPDGIEN---PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-------T----------EEEEEEEEE---EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-------C----------cCcCCcccc---cccceEEEeCCCCEE
Confidence 44578999999999855 4433 3599999964 3 233221111 112349999999988
Q ss_pred EEEeCCCe-----------EEEEecCCC
Q 003221 447 AIVSSKGT-----------CHVFVLSPF 463 (838)
Q Consensus 447 as~S~dGT-----------VhIw~l~~~ 463 (838)
.....+.. |..|.+...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCC
Confidence 77765542 666666543
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=66.44 E-value=84 Score=35.90 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE--
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-- 424 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~-- 424 (838)
.++.|.+.|-.+++.+..+..-..| ..++|+|+|+.+..+......|-++|.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~------------------~v~~~~ 198 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN------------------SVVRGS 198 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc------------------ceeccc
Confidence 3678999999999888777665567 889999999977777765667999996421 1111
Q ss_pred ----EecccccccEEEEEEccCCCEEEEEeCC---CeEEEEecCC
Q 003221 425 ----LHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (838)
Q Consensus 425 ----L~RG~t~a~I~sIaFSpDg~~Las~S~d---GTVhIw~l~~ 462 (838)
...+. .-..+++++||+++.+.-.. +++-+.+...
T Consensus 199 ~~~~~~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 199 VGSLVGVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cccccccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 11111 23568899999976655444 3666655543
No 376
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=66.26 E-value=71 Score=36.94 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=48.1
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC---C----------------CCC-------CccccCCcceEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---G----------------SGN-------HKYDWNSSHVHLYK 424 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~---~----------------~G~-------~~~~~~~~~~~l~~ 424 (838)
.|.++.|.++-.-||.+-..|. +-||....+...+ . .+. ...+.......++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4788999999777888888787 5588764331110 0 000 00000001111111
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
++ ...+.|..++.| |=-|+|+|..+|++-|.|+
T Consensus 82 ~~--~~~g~vtal~~S-~iGFvaigy~~G~l~viD~ 114 (395)
T PF08596_consen 82 LD--AKQGPVTALKNS-DIGFVAIGYESGSLVVIDL 114 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEET
T ss_pred ee--ccCCcEeEEecC-CCcEEEEEecCCcEEEEEC
Confidence 21 124579999998 6669999999999999998
No 377
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=64.70 E-value=38 Score=33.45 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=40.7
Q ss_pred CEEEEEECC--------CCeEEEEEeCCCcEEEEEeC-------CCeEEEEeCCeEEEEECCCCceee
Q 003221 173 TAVRFYSFQ--------SHCYEHVLRFRSSVCMVRCS-------PRIVAVGLATQIYCFDALTLENKF 225 (838)
Q Consensus 173 ~tV~IWDl~--------tg~~V~tL~f~s~V~sV~~s-------~~iLaV~l~~~I~IwD~~t~e~l~ 225 (838)
++|.|++.. ....+..|.+...|.+++.- ++.|++|....|-+||+.....++
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh
Confidence 567777654 44567888999888888552 469999999999999998765544
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.81 E-value=1.8e+02 Score=32.06 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=39.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE--EEEEeCCCeEEE-EeCCeEEEEECCCCceeeEEee
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V--~sV~~s~~iLaV-~l~~~I~IwD~~t~e~l~tL~t 229 (838)
.+++.--|.++|+.+.+-.....| .++-+. +.+++ +..+.+|+.+..|++..+....
T Consensus 32 s~~~~avd~~sG~~~We~ilg~RiE~sa~vvg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILGVRIECSAIVVG-DFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred CceEEEecCCCCcEEeehhhCceeeeeeEEEC-CEEEEEEccCcEEEEEecchhheeeeee
Confidence 377888899999988876665555 233333 44555 5567899999999987665543
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.27 E-value=16 Score=45.37 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=47.2
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+-.-|.+.||...+.+.-.....|..||.-|.|||+|+.|.|+..-| .+.+|+..
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCc-eeEEEEee
Confidence 45578899999888777677778999999999999999999999866 48899875
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.83 E-value=90 Score=33.59 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=48.8
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
.+..-+|+++|.+.+....+ ...+++.-... |. .....+........|.++.+||||..+|...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~-~~~~~~~~~~~------g~---------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGS-GGVRVVRDSAS------GT---------GEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ccccccccCCCCEEEEEcCC-CceEEEEecCC------Cc---------ceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 77888999999888776653 44666641110 21 1112221111111699999999999999988
Q ss_pred C---CCeEEEEecCCCC
Q 003221 451 S---KGTCHVFVLSPFG 464 (838)
Q Consensus 451 ~---dGTVhIw~l~~~g 464 (838)
. ++.|.|=.|...+
T Consensus 131 ~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 131 EDGGGGRVYVAGVVRDG 147 (253)
T ss_pred ecCCCCeEEEEEEEeCC
Confidence 3 4678877776543
No 381
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=55.30 E-value=5.9 Score=43.79 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=56.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec-cc--ccccEEEEEEccC
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GI--TSATIQDICFSHY 442 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R-G~--t~a~I~sIaFSpD 442 (838)
.+|..-|++++|+.|-..+.+|.. -.|++|.+.-. .|. --+....- .+ -...|++--|+|.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDd--LrINLWnl~i~-----D~s---------FnIVDiKP~nmeeLteVItSaeFhp~ 232 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADD--LRINLWNLEII-----DGS---------FNIVDIKPHNMEELTEVITSAEFHPE 232 (460)
T ss_pred ccceeEeeeeeecCchheeeeccc--eeeeecccccc-----CCc---------eEEEeccCccHHHHHHHHhhcccCHh
Confidence 578899999999999999988864 46999987531 110 11111110 00 1135889999997
Q ss_pred -CCEEEEEeCCCeEEEEecCC
Q 003221 443 -SQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 443 -g~~Las~S~dGTVhIw~l~~ 462 (838)
...+..+|++|+||+-++..
T Consensus 233 ~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 233 MCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred HcceEEEecCCCcEEehhhhh
Confidence 56788899999999999863
No 382
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=54.90 E-value=3.2e+02 Score=34.19 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=49.2
Q ss_pred CeEEEEEC--CCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-----
Q 003221 371 PISALCFD--PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----- 443 (838)
Q Consensus 371 pIsaLaFS--PdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg----- 443 (838)
....|++. ...++||.++- .+.|.||-..... .. ..+..+.. +...|-+|+|-++.
T Consensus 165 SaWGLdIh~~~~~rlIAVSsN-s~~VTVFaf~l~~-----~r--------~~~~~s~~---~~hNIP~VSFl~~~~d~~G 227 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSN-SQEVTVFAFALVD-----ER--------FYHVPSHQ---HSHNIPNVSFLDDDLDPNG 227 (717)
T ss_pred ceeEEEEEecCcceEEEEecC-CceEEEEEEeccc-----cc--------cccccccc---cccCCCeeEeecCCCCCcc
Confidence 67789988 77777776665 6779998764310 00 00111111 22369999997764
Q ss_pred -CEEEEEeCCCeEEEEecC
Q 003221 444 -QWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 444 -~~Las~S~dGTVhIw~l~ 461 (838)
.+|++++-.|.+-+|++.
T Consensus 228 ~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 228 HVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEeccCcEEEEEEE
Confidence 289999999999999883
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=54.22 E-value=43 Score=37.95 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=41.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCC
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p 401 (838)
+|.++|+.+++.+..+.. ..++.+|+.+.|.+ +|.+.+..+..+.|||..+
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 599999999999999884 24788999999987 7766666445699999865
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=54.06 E-value=4.1e+02 Score=30.87 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=27.1
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC---eEEEEeCC
Q 003221 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---IVAVGLAT 211 (838)
Q Consensus 171 ~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~---iLaV~l~~ 211 (838)
.++.|.-.|+++|+.-..+.-...+--+.++|. +|+.|-++
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccC
Confidence 457888889999998777776777777888774 77777643
No 385
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.86 E-value=54 Score=42.41 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
+..|.++.|-.++.-++-+..+|..|-+ |... ...+. -|.....|.+++||||.+++|.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilv-d~et-------------------~~~ei-vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILV-DPET-------------------LELEI-VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEE-cccc-------------------cceee-eeeccCceEEEeecCCCcEEEE
Confidence 3578889999998888888888885544 5432 11222 2444446999999999999999
Q ss_pred EeCCCeEEEE
Q 003221 449 VSSKGTCHVF 458 (838)
Q Consensus 449 ~S~dGTVhIw 458 (838)
.+.++|+.+-
T Consensus 127 iT~~~tll~m 136 (1265)
T KOG1920|consen 127 ITGRQTLLFM 136 (1265)
T ss_pred EeCCcEEEEE
Confidence 9999998664
No 386
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=52.33 E-value=90 Score=36.46 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=32.1
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
....|.-....+.+|+.+|+|++.|+++.-|+ |-++|+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~ 338 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVAR 338 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCC
Confidence 44555556667899999999999999888777 78999964
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=52.21 E-value=2.7e+02 Score=34.34 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.5
Q ss_pred CcEEEEEeCCC-eEEEEeCCeEEEEEC
Q 003221 193 SSVCMVRCSPR-IVAVGLATQIYCFDA 218 (838)
Q Consensus 193 s~V~sV~~s~~-iLaV~l~~~I~IwD~ 218 (838)
.+|-+..+-++ .|+|+.+++++|||-
T Consensus 129 h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 129 HPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CCccceeEecCCeEEEEeCCEEEEECC
Confidence 47777777665 899999999999983
No 388
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=50.59 E-value=1.3e+02 Score=33.17 Aligned_cols=38 Identities=26% Similarity=0.549 Sum_probs=29.9
Q ss_pred eEEEEEecCcEEEEEccCC-CceeEEeeeccCcEEEEEEec
Q 003221 76 QVLLLGYQNGFQVLDVEDA-SNFNELVSKRDGPVSFLQMQP 115 (838)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~-g~v~ells~hdg~V~~l~~lP 115 (838)
+.|++|++.|+-+-|++.. +...++++++ +|..+++++
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~--~v~q~~v~~ 52 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGRR--SVTQIWVLE 52 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCcC--ceEEEEEEh
Confidence 5799999999988888543 4566777654 699999995
No 389
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=49.86 E-value=35 Score=40.96 Aligned_cols=74 Identities=27% Similarity=0.465 Sum_probs=40.6
Q ss_pred EEEECCCCCEEEEEecCCCEEEEEecCCCc-----ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSC-----MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 374 aLaFSPdGtlLATAS~dGt~IrVwdi~p~~-----~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
-|+|+|+|+|++.-+..+...+|+-..+.- ..+ .|.-.........++..|..+-..+.++.++|+||++.|.+
T Consensus 440 NL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~-~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 440 NLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARN-DGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFV 518 (524)
T ss_pred ceEECCCCCEEEEeCCCCCCcccccccccCceeeeeec-ccceeeeccccccceeeeccCCCCcccccceECCCCCEEEE
Confidence 389999999888765544433222211100 000 00000000011134556666777789999999999998876
No 390
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=48.35 E-value=3e+02 Score=30.46 Aligned_cols=42 Identities=10% Similarity=-0.156 Sum_probs=34.8
Q ss_pred EEEeCCCcEEEEEeCCCeEEEEeCCeEEEEECCCCceeeEEe
Q 003221 187 HVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVL 228 (838)
Q Consensus 187 ~tL~f~s~V~sV~~s~~iLaV~l~~~I~IwD~~t~e~l~tL~ 228 (838)
..+.+.....++++...+|.+-..+.|.++++.+++..+++.
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEe
Confidence 466788888899998887777778889999999998877765
No 391
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=48.06 E-value=2.1e+02 Score=31.04 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=46.1
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG~t~a~I~sIaFSpD 442 (838)
.+.+-...|+.|+|+|+...|++-..+...|-..+.. | ..+.+.. .|. ...-.|++--+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G----------~vlr~i~l~g~--~D~EgI~y~g~ 75 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------G----------KVLRRIPLDGF--GDYEGITYLGN 75 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------EEEEEE-SS---SSEEEEEE-ST
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------C----------CEEEEEeCCCC--CCceeEEEECC
Confidence 4444455699999999855455444445545444431 4 2333332 332 35778999888
Q ss_pred CCEEEEEeCCCeEEEEecCCCCC
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg 465 (838)
++++++.-.++++.++.+...+.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----T
T ss_pred CEEEEEEcCCCcEEEEEEecccc
Confidence 88877776789999999966544
No 392
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=47.33 E-value=1.6e+02 Score=34.14 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=38.9
Q ss_pred CCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCCCE--EEEEeCC--
Q 003221 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQW--IAIVSSK-- 452 (838)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a--~I~sIaFSpDg~~--Las~S~d-- 452 (838)
|.-.+++...+++. +.|||+. | +.+..+..|.-+. .++.+.+ .|+. ||++|++
T Consensus 66 p~kSlIigTdK~~G-L~VYdL~--------G----------k~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~ 124 (381)
T PF02333_consen 66 PAKSLIIGTDKKGG-LYVYDLD--------G----------KELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSD 124 (381)
T ss_dssp GGG-EEEEEETTTE-EEEEETT--------S-----------EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CC
T ss_pred cccceEEEEeCCCC-EEEEcCC--------C----------cEEEeecCCCcceeeeecceec--CCceEEEEEEecCcC
Confidence 45567777777665 8999994 5 4666665443322 2344444 4554 6788765
Q ss_pred --CeEEEEecCCCCC
Q 003221 453 --GTCHVFVLSPFGG 465 (838)
Q Consensus 453 --GTVhIw~l~~~gg 465 (838)
.+++||.|++..+
T Consensus 125 g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 125 GRNSLRLFRIDPDTG 139 (381)
T ss_dssp CT-EEEEEEEETTTT
T ss_pred CCCeEEEEEecCCCC
Confidence 4799999987433
No 393
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=46.61 E-value=90 Score=28.41 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=35.4
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
-|.|.-||-..-+. ...+ -..-+-+++||++++|..|+.-++.|+||...
T Consensus 35 ~~~Vvyyd~~~~~~--va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVKV--VASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeEE--eecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35688888653222 2222 22346799999999999999988899999864
No 394
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=46.48 E-value=51 Score=35.64 Aligned_cols=89 Identities=20% Similarity=0.130 Sum_probs=51.6
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 351 V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
=.+||+.+++....-.....-.+.=+|-|||++|.+++..+ +.||+|+-.. .+ ...+|......+. ..|-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~---~~----~~~~w~e~~~~m~-~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT---SD----GTCDWTESPNDMQ-SGRW 119 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC---CC----CCCCceECccccc-CCCc
Confidence 56899998875433223334455667899999999988643 4588888522 00 1123322111111 1122
Q ss_pred cccccEEEEEEccCCCEEEEEeCC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
. -+..-=+||+.|++|+.+
T Consensus 120 Y-----pT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 120 Y-----PTATTLPDGRVLIVGGSN 138 (243)
T ss_pred c-----ccceECCCCCEEEEeCcC
Confidence 1 123334799999999988
No 395
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=45.42 E-value=1.1e+02 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCEEEEEecCC
Q 003221 379 PSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p 401 (838)
|+|+.|..+...+..|-++|...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 68888888887777899999853
No 396
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.03 E-value=39 Score=41.24 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
|...|..-+|+-.+++|+-|+..|. +.+|+-.. |. .+.++. .| ....+..++.|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~-------~~---------~~~~~~-~~-~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHT-------GE---------MRKLKN-EG-ATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecCc-------hh---------hhcccc-cC-ccceEEEEEecchhHhhh
Confidence 4455677789999999999999775 78887421 20 122332 22 233577788999999999
Q ss_pred EEeCCCeEEEEecCCCCCc
Q 003221 448 IVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 448 s~S~dGTVhIw~l~~~gg~ 466 (838)
+|+..|-|-||.++. +++
T Consensus 93 agt~~g~V~v~ql~~-~~p 110 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNK-ELP 110 (726)
T ss_pred hhcCCceEEeehhhc-cCC
Confidence 999999999999987 443
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=44.17 E-value=1.4e+02 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=27.7
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
..+.++..- ...|.++.|+.+. .|++...||++++|++.
T Consensus 71 ~ll~~i~w~--~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWD--SGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEEC--CCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 355554321 1479999999864 56677799999999874
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=43.69 E-value=16 Score=45.69 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=38.0
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEE-----------ECCCCCEEEEEecCCCEEEEEecC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALC-----------FDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLa-----------FSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+..+|+|++.....-. ...|+.|...+..++ +||||+.+|+++.||. ++.|.+-
T Consensus 201 ~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred ccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 3556778776664322 256777766554433 6999999999999886 7888874
No 399
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=39.64 E-value=20 Score=27.84 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=13.6
Q ss_pred cccCCCCeeEEEecc
Q 003221 804 TESSEGGKTLFFVCP 818 (838)
Q Consensus 804 ~~~~~~~~~~~~~~~ 818 (838)
+-|.|+|.|+||+|.
T Consensus 18 ~RsaDE~mT~fy~C~ 32 (40)
T smart00440 18 TRSADEPMTVFYVCT 32 (40)
T ss_pred ccCCCCCCeEEEEeC
Confidence 678999999999994
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=39.02 E-value=1.6e+02 Score=32.44 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEeC-CeEEEEECCCCceeeEEe
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFSVL 228 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l~-~~I~IwD~~t~e~l~tL~ 228 (838)
.++.-+||..+-+.+.++.+++.=+.++.+.+.|..+.. ++|+++|..+++...++.
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred CCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 378999999999999999999988999988887777664 689999999998877765
No 401
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=38.53 E-value=2.5e+02 Score=28.26 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.6
Q ss_pred cEEEEEEccC------CCEEEEEeCCCeEEEEecC
Q 003221 433 TIQDICFSHY------SQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 433 ~I~sIaFSpD------g~~Las~S~dGTVhIw~l~ 461 (838)
.|.+++|||- +-.||+-+.+|.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 6889999984 3479999999999999854
No 402
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=36.80 E-value=3.9e+02 Score=25.65 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=36.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
|+.|..|+||+-. ..+..+.-+ +.|.+|+-... ..++.|-..|| |-||+-
T Consensus 21 Gs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~ 70 (111)
T PF14783_consen 21 GSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDR 70 (111)
T ss_pred ecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeC
Confidence 5778999999764 567777655 45666666665 56888888787 889875
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.25 E-value=1e+03 Score=30.27 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=38.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE-------------EEEEe----CCCeEEEEe-----------CCeEEEEECCCCcee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSV-------------CMVRC----SPRIVAVGL-----------ATQIYCFDALTLENK 224 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V-------------~sV~~----s~~iLaV~l-----------~~~I~IwD~~t~e~l 224 (838)
..|.-.|.+||+.+..+...+.| +.+.. ..+.|+++. .+.|+-||+.|++.+
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 66777899999988766443333 11111 234666653 346999999999999
Q ss_pred eEEee
Q 003221 225 FSVLT 229 (838)
Q Consensus 225 ~tL~t 229 (838)
+....
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 98764
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=35.86 E-value=3.4e+02 Score=33.55 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=54.5
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc--
Q 003221 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-- 440 (838)
Q Consensus 363 ~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS-- 440 (838)
.+|..--...+.+.-|.-+ .+|..+.+++.+.|||+.. + ...|+-.- .....|.++.|.
T Consensus 23 ~~~~T~i~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~-------~----------~lE~~~~f-~~~~~I~dLDWtst 83 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIK-KIAVVDSSRSELTIWDTRS-------G----------VLEYEESF-SEDDPIRDLDWTST 83 (631)
T ss_pred EEEecCCCCcceEeecccC-cEEEEECCCCEEEEEEcCC-------c----------EEEEeeee-cCCCceeeceeeec
Confidence 3444444455666666655 4556677799999999953 2 23333211 123469999885
Q ss_pred cCCCEEEEEeCCCeEEEEecCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~ 462 (838)
|||+.+.+.+....|.||.--.
T Consensus 84 ~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 84 PDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CCCCEEEEEEcCcEEEEEEccc
Confidence 8999999999999999997544
No 405
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.86 E-value=4.5e+02 Score=31.81 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=55.4
Q ss_pred CCceEEEEECCC--CcEEEEeccCC----CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 347 NAGIVVVKDFVT--RAIISQFKAHT----SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 347 ~~G~V~VwDl~s--~~~v~~~~aH~----spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
.+..|.=||..- ...+..-+.|+ ..-+|.+-.-+| ++|.||.+|. ||+||-. | +
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd-IRLYdri--------~----------~ 461 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGD-IRLYDRI--------G----------R 461 (644)
T ss_pred cCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCc-EEeehhh--------h----------h
Confidence 344566667642 22333333332 345677766777 7889999887 9999852 2 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.-.+..-|. ...|.-|.-+.||+||.+.... ++-+-++
T Consensus 462 ~AKTAlPgL-G~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 462 RAKTALPGL-GDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred hhhhccccc-CCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 112222232 2358889999999999876654 5555443
No 406
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=33.16 E-value=4.8e+02 Score=32.47 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCCCEEEEEECCCCeEEEEEeCCC-------cEEEEEe-CCCeEEEEeCCeEEEEECCCCc
Q 003221 170 NSPTAVRFYSFQSHCYEHVLRFRS-------SVCMVRC-SPRIVAVGLATQIYCFDALTLE 222 (838)
Q Consensus 170 ~~p~tV~IWDl~tg~~V~tL~f~s-------~V~sV~~-s~~iLaV~l~~~I~IwD~~t~e 222 (838)
+..+++.+|++-.-+..+++..+. .+.++.. +++++..+.++.||+.|+.=..
T Consensus 248 l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~s 308 (670)
T PF10395_consen 248 LSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFES 308 (670)
T ss_pred EeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhh
Confidence 456889999998888888887662 3444433 6788999999999999987433
No 407
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.05 E-value=1.9e+02 Score=31.93 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=38.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE-------EEEEeCC-------CeEEEEeC--CeEEEEECCCCceeeEEee
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSV-------CMVRCSP-------RIVAVGLA--TQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V-------~sV~~s~-------~iLaV~l~--~~I~IwD~~t~e~l~tL~t 229 (838)
|-+|-+||+++++.++++.|+..+ ..++++. .++-++.. ..|.+||+.+++-.+.+..
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 458999999999999999987543 5555543 24444544 3799999999986554443
No 408
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.38 E-value=93 Score=36.60 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=31.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEEC
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDA 218 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~ 218 (838)
..|.|||..+++.+..++... |..|-++++ ++|...++.|+|++-
T Consensus 126 ~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 569999999999999998875 999999865 888888888998873
No 409
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=32.17 E-value=33 Score=26.46 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=14.0
Q ss_pred ccccCCCCeeEEEecc
Q 003221 803 STESSEGGKTLFFVCP 818 (838)
Q Consensus 803 ~~~~~~~~~~~~~~~~ 818 (838)
-+-|.|++.|+||+|.
T Consensus 17 Q~rsaDE~~T~fy~C~ 32 (39)
T PF01096_consen 17 QTRSADEPMTLFYVCC 32 (39)
T ss_dssp SSSSSSSSSEEEEEES
T ss_pred eccCCCCCCeEEEEeC
Confidence 4668899999999996
No 410
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.03 E-value=25 Score=40.90 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=47.2
Q ss_pred ccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 344 DMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s---~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
+++.||.++.|--.- -+.+.+|++|...|..|+.+-+|.+++|.+.-++.+||||+..
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 356788888886543 2356889999999999999999999999777567899999964
No 411
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=31.85 E-value=2.2e+02 Score=33.88 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCeEEEEEecCc-EEEEEccC---CCceeEEeeeccC----------------------cEEEEEEecCCCCCCCCCCcc
Q 003221 74 FKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDG----------------------PVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~---~g~v~ells~hdg----------------------~V~~l~~lP~p~~~~~~d~F~ 127 (838)
....|++++.+| +-...... .+...+..-..+. .+..+.+.+. .-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 227 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSS---------EI 227 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE--------------
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecc---------ee
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR 190 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~ 190 (838)
....+|++++.| +++|+||+++++++.+..
T Consensus 228 ~~~~~l~tl~~D---------------------------------~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 228 NDDTFLFTLSRD---------------------------------HTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTTEEEEEETT---------------------------------SEEEEEETTTTCEEEEEE
T ss_pred CCCCEEEEEeCC---------------------------------CeEEEEECCCCeEEEEec
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=31.84 E-value=1.9e+02 Score=32.40 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=42.4
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
...+..+.+.|+|.+++++.. |...+-+|- |. +......++ ....++++++.++++.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~---------gg---------~tW~~~~~~-~~~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP---------GQ---------TAWTPHQRN-SSRRLQSMGFQPDGNLWML 231 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC---------CC---------CeEEEeeCC-CcccceeeeEcCCCCEEEE
Confidence 356888999999988887766 764433221 20 111222233 3346999999999997766
Q ss_pred EeCCCeEE
Q 003221 449 VSSKGTCH 456 (838)
Q Consensus 449 ~S~dGTVh 456 (838)
+ ..|.+.
T Consensus 232 g-~~G~~~ 238 (334)
T PRK13684 232 A-RGGQIR 238 (334)
T ss_pred e-cCCEEE
Confidence 5 467653
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.05 E-value=2.3e+02 Score=34.10 Aligned_cols=88 Identities=13% Similarity=0.262 Sum_probs=49.5
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC---CCCCCccccC--CcceEEEEEecccccccEEEEEEccCC--
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSGNHKYDWN--SSHVHLYKLHRGITSATIQDICFSHYS-- 443 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~---~~G~~~~~~~--~~~~~l~~L~RG~t~a~I~sIaFSpDg-- 443 (838)
.|..+..|+.|.+.|-++.+|- .|-.+-.....+ .+|....... +-...+|. -.+.-.+.-.+|.||+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeec---cCCceeeeeccccCCccC
Confidence 4566778889998888888773 333331100000 0110000000 00012222 1122257788999997
Q ss_pred -CEEEEEeCCCeEEEEecCCC
Q 003221 444 -QWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 444 -~~Las~S~dGTVhIw~l~~~ 463 (838)
..|..-++|.+++||+++..
T Consensus 180 D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CceEEEEecCcEEEEEecCCc
Confidence 68899999999999999764
No 414
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=30.89 E-value=1.1e+02 Score=36.85 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=38.4
Q ss_pred EEEEECCCCCEEEEEecCC-----CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003221 373 SALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dG-----t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~La 447 (838)
--|+|+|.|+|.+..+-.+ +..=+|.+... + +..-.+..|.++-..+.+...+||||++.|.
T Consensus 503 Dnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~------~-------p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF 569 (616)
T COG3211 503 DNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTP------D-------PKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF 569 (616)
T ss_pred CceEECCCCCEEEEecCCCCccCcccccccccccC------C-------CccceeeeeccCCCcceeecceeCCCCceEE
Confidence 3589999999887544322 12233422110 0 1112455566676778999999999998766
Q ss_pred E
Q 003221 448 I 448 (838)
Q Consensus 448 s 448 (838)
+
T Consensus 570 V 570 (616)
T COG3211 570 V 570 (616)
T ss_pred E
Confidence 5
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=30.52 E-value=2.4e+02 Score=30.29 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=45.2
Q ss_pred CeEEEEECCCCCEEEEEe--cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 371 PISALCFDPSGTLLVTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS--~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
.+.+.+.|+||+.+|... .++..+.++... + ....+..|. .+..-+|++|+...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--------~-----------~~~~~~~g~---~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--------G-----------PVRPVLTGG---SLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--------C-----------cceeeccCC---ccccccccCCCCEEEE
Confidence 688899999999998877 667767776542 1 111221221 4777899999776666
Q ss_pred EeCCCeEEEEe
Q 003221 449 VSSKGTCHVFV 459 (838)
Q Consensus 449 ~S~dGTVhIw~ 459 (838)
...+....++.
T Consensus 83 ~~~~~~~~~~~ 93 (253)
T PF10647_consen 83 DDGSGGVRVVR 93 (253)
T ss_pred EcCCCceEEEE
Confidence 66666666664
No 416
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=30.30 E-value=92 Score=22.43 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 433 TIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 433 ~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
.|.+|+-++ .|++++++.+-++||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 477787775 6999999999999984
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=30.21 E-value=51 Score=35.38 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=45.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEE--ecCCCEEEEEecCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTA--SVYGNNINIFRIMP 401 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~-spIsaLaFSPdGtlLATA--S~dGt~IrVwdi~p 401 (838)
+..+|.|+.|.+.-.+.+...-.|+ .++..+..+..++.|+.+ |. +.+++.|++.+
T Consensus 120 ~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-d~~~k~W~ve~ 178 (238)
T KOG2444|consen 120 GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-DRVLKKWNVEK 178 (238)
T ss_pred eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-chhhhhcchhh
Confidence 4578999999999888888888888 788888888888888888 76 55688888754
No 418
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=29.98 E-value=1.4e+02 Score=27.39 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=29.6
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~ 389 (838)
+...|.+.-||..+++....+.+-. --+-+++++|++.|+.+-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEec
Confidence 4568999999999987644444422 3478999999997776654
No 419
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=29.54 E-value=7.9e+02 Score=27.02 Aligned_cols=107 Identities=13% Similarity=0.187 Sum_probs=57.9
Q ss_pred eEEEEECCCCcEEEEecc------CCCCeEEEEECCC-C----CEEEEEecCCCEEEEEecCCCcccC-CCCCCccccCC
Q 003221 350 IVVVKDFVTRAIISQFKA------HTSPISALCFDPS-G----TLLVTASVYGNNINIFRIMPSCMRS-GSGNHKYDWNS 417 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~a------H~spIsaLaFSPd-G----tlLATAS~dGt~IrVwdi~p~~~~~-~~G~~~~~~~~ 417 (838)
.+.+||+.+.+++.++.- ..+-++.|+++.. + .+..-++..+.-|-|+|+......- ..+....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 689999999998776642 2456888999883 2 4555566655668899997531100 00000000000
Q ss_pred cc----eEEEEEecccccccEEEEEEcc---CCCEEEEEeCCCeEEEEecCC
Q 003221 418 SH----VHLYKLHRGITSATIQDICFSH---YSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 418 ~~----~~l~~L~RG~t~a~I~sIaFSp---Dg~~Las~S~dGTVhIw~l~~ 462 (838)
.. ...+.+. ..|..++.+| |++||.-....++ ++|.+++
T Consensus 115 ~~~~i~g~~~~~~-----dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T 160 (287)
T PF03022_consen 115 GPFTIGGESFQWP-----DGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT 160 (287)
T ss_dssp EEEEETTEEEEET-----TSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred cceeccCceEecC-----CCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence 00 0111111 1277777765 7788877776653 6777754
No 420
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=29.18 E-value=1.7e+02 Score=35.20 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=42.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE--EEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V--~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.=||+.+|+.+...+...+. -.+.....++.++. ++.+++||+.|+|.++....
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 67999999999999888765432 11233445665654 67899999999999998765
No 421
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=27.32 E-value=9e+02 Score=31.69 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=38.6
Q ss_pred CEEEEEECCCCeEEE--EEeC-CCcEEEEEeCCCeEEEEeCC-eE--EEEECCCCceeeEEeecCC
Q 003221 173 TAVRFYSFQSHCYEH--VLRF-RSSVCMVRCSPRIVAVGLAT-QI--YCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~--tL~f-~s~V~sV~~s~~iLaV~l~~-~I--~IwD~~t~e~l~tL~t~p~ 232 (838)
+.+++||+-..+... .+++ +..|.+++....+++||.-. .+ +.|+-... .++.+...|.
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n-~l~~fadD~~ 1018 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDN-QLIVFADDPV 1018 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCC-eEEEEeCCCc
Confidence 689999997665543 3333 77899999999999998854 44 45554433 2444444444
No 422
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.51 E-value=1.4e+02 Score=22.36 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=17.2
Q ss_pred EEEEeCCCcE-EEEEeCCCeEEE-EeCCeEEEEECCC
Q 003221 186 EHVLRFRSSV-CMVRCSPRIVAV-GLATQIYCFDALT 220 (838)
Q Consensus 186 V~tL~f~s~V-~sV~~s~~iLaV-~l~~~I~IwD~~t 220 (838)
+.+.+....+ .++....+.|.+ +.+++++++|+.|
T Consensus 4 ~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 4 LWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred eEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3344444433 233555555555 4468999999875
No 423
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=26.30 E-value=25 Score=42.45 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=59.2
Q ss_pred CCceEEEEECCCC----cEEEEecc-CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 347 NAGIVVVKDFVTR----AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 347 ~~G~V~VwDl~s~----~~v~~~~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
.+-.+.|||+.++ +.-..|.+ -....+.+|+..+-+++.+|.. -+.+++||+...+... ..
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~-sr~~~ifdlRqs~~~~-------------~s 192 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT-SRSVHIFDLRQSLDSV-------------SS 192 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-cchhhhhhhhhhhhhh-------------hh
Confidence 3556899999875 22334444 3445678999988888887776 5579999986321100 11
Q ss_pred EEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEec
Q 003221 422 LYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSp-Dg~~Las~S~dGTVhIw~l 460 (838)
+.+ ..++.+..+| ...++|+.+ ||-|-|||-
T Consensus 193 vnT-------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 193 VNT-------KYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhh-------hhcccceecCCCCCceeccc-cCceeeccc
Confidence 111 1244556667 667888777 999999994
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.30 E-value=1.2e+02 Score=32.23 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=28.6
Q ss_pred EEEeCCCcEEEEEeCCC-eEEEEeCCeEEEEECCCCcee
Q 003221 187 HVLRFRSSVCMVRCSPR-IVAVGLATQIYCFDALTLENK 224 (838)
Q Consensus 187 ~tL~f~s~V~sV~~s~~-iLaV~l~~~I~IwD~~t~e~l 224 (838)
-.+...++|.-+.++.+ ++++...+.+|+||+.+++..
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 34566778877888877 555566789999999998653
No 425
>PRK10115 protease 2; Provisional
Probab=26.04 E-value=5.5e+02 Score=31.95 Aligned_cols=101 Identities=5% Similarity=-0.047 Sum_probs=56.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC-C----CEEEEEecCCCcccCCCCCCccccCCc
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-G----NNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d-G----t~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
.|+..-.+.|.|+.++..+........ ..++|.+||+.|+-...+ + ..|..+++.+ + ...
T Consensus 148 ~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt-------~------~~~ 212 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT-------P------ASQ 212 (686)
T ss_pred CCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC-------C------hhH
Confidence 345556799999998864322222222 459999999866655442 2 2455555532 1 001
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 003221 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (838)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG---TVhIw~l~~ 462 (838)
.+++++- .. .....++..+.|+++++..+..+ .+.+++...
T Consensus 213 d~lv~~e--~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 213 DELVYEE--KD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CeEEEee--CC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 2345542 11 11122455566999988776665 477777543
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.81 E-value=3.2e+02 Score=28.93 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=45.2
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc------cccccEEEEEEccCCC
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG------ITSATIQDICFSHYSQ 444 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG------~t~a~I~sIaFSpDg~ 444 (838)
++..|. .+|.+|..-..+|. ++|||+... .... .. .-+..+... .....|.++..+.+|.
T Consensus 14 ~~~~l~--~~~~~Ll~iT~~G~-l~vWnl~~~-------k~~~--~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~ 79 (219)
T PF07569_consen 14 PVSFLE--CNGSYLLAITSSGL-LYVWNLKKG-------KAVL--PP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGV 79 (219)
T ss_pred ceEEEE--eCCCEEEEEeCCCe-EEEEECCCC-------eecc--CC--ccHHHHhcccccccCCCCCcEEEEEEcCCCC
Confidence 444444 45677777777686 999999642 1000 00 000011100 1234689999999998
Q ss_pred EEEEEeCCCeEEEEecCC
Q 003221 445 WIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 445 ~Las~S~dGTVhIw~l~~ 462 (838)
-|++-++ |....|+.+-
T Consensus 80 PiV~lsn-g~~y~y~~~L 96 (219)
T PF07569_consen 80 PIVTLSN-GDSYSYSPDL 96 (219)
T ss_pred EEEEEeC-CCEEEecccc
Confidence 8877664 7788888653
No 427
>PRK10115 protease 2; Provisional
Probab=24.14 E-value=3.6e+02 Score=33.58 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCeEEEEECCCCCEEEEEecCC----CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 370 SPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dG----t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
-.+..+.+||||++||-+-..+ ..|+|-|+.+ | ..+-+.-.+ .. ..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-------g----------~~l~~~i~~---~~-~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-------G----------NWYPELLDN---VE-PSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-------C----------CCCCccccC---cc-eEEEEeeCCCE
Confidence 3577889999999998765432 2366666642 2 111111111 12 45999999998
Q ss_pred EEEEeCCC------eEEEEecCCC
Q 003221 446 IAIVSSKG------TCHVFVLSPF 463 (838)
Q Consensus 446 Las~S~dG------TVhIw~l~~~ 463 (838)
|+.+..+. .|..+++.+.
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCC
Confidence 88877642 3555555543
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=23.90 E-value=5.4e+02 Score=29.13 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=37.7
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeE---EEEECC------CCCEEEEEecCCCEEEEEecCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPIS---ALCFDP------SGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIs---aLaFSP------dGtlLATAS~dGt~IrVwdi~p 401 (838)
+..-|.|-+||.. ++.+..| ++..+++ .|+..| +|.+|+--=-||+ |++||...
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~-as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~-InaFD~~s 280 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRV-ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT-INAYDPQS 280 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEe-ccCCcccCCceeeeChhhhCCCCCCeEEeecCCce-eEEecCCC
Confidence 3456899999985 6677777 4555553 477644 6888886555676 99999753
No 429
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=23.80 E-value=5.6e+02 Score=27.79 Aligned_cols=73 Identities=25% Similarity=0.335 Sum_probs=39.9
Q ss_pred CCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEcc
Q 003221 368 HTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSH 441 (838)
Q Consensus 368 H~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~-----a~I~sIaFSp 441 (838)
+...+++|+|+|. |.+|+-. ...+.|-++|.. |. ....+.|.+|.+. ..--.|+|.+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS-~es~~l~~~d~~--------G~--------~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILS-DESRLLLELDRQ--------GR--------VVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp -SS---EEEEETTTTEEEEEE-TTTTEEEEE-TT------------------EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred eeccccceEEcCCCCeEEEEE-CCCCeEEEECCC--------CC--------EEEEEEeCCcccCcccccCCccEEEECC
Confidence 3445789999996 5666654 447778888752 41 2455677776542 1356899999
Q ss_pred CCCEEEEEeCCCeEEEE
Q 003221 442 YSQWIAIVSSKGTCHVF 458 (838)
Q Consensus 442 Dg~~Las~S~dGTVhIw 458 (838)
||+ |.++|.-+-..+|
T Consensus 232 ~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 232 DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp T---EEEEETTTEEEEE
T ss_pred CCC-EEEEcCCceEEEe
Confidence 995 4555566655555
No 430
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.33 E-value=1.7e+02 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=18.1
Q ss_pred eEEEEeCCeEEEEECCCCceeeEE
Q 003221 204 IVAVGLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 204 iLaV~l~~~I~IwD~~t~e~l~tL 227 (838)
+++...++.++.+|+.+++.+++.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 444455678999999999887753
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=23.31 E-value=2e+02 Score=32.52 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCeEEEEECCCCCEEEEEecCCCEEE----------------EEecCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003221 368 HTSPISALCFDPSGTLLVTASVYGNNIN----------------IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (838)
Q Consensus 368 H~spIsaLaFSPdGtlLATAS~dGt~Ir----------------Vwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~ 431 (838)
+......++|.|||.+.++-+..+.... ||.+.|. | ..+..+..|..+
T Consensus 122 ~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd------g----------~~~e~~a~G~rn 185 (367)
T TIGR02604 122 HHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD------G----------GKLRVVAHGFQN 185 (367)
T ss_pred ccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC------C----------CeEEEEecCcCC
Q ss_pred ccEEEEEEccCCCEEEEEeCCC
Q 003221 432 ATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 432 a~I~sIaFSpDg~~Las~S~dG 453 (838)
.+.++|+++|+++++-..++
T Consensus 186 --p~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 186 --PYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred --CccceECCCCCEEEEccCCC
No 432
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=23.24 E-value=3.3e+02 Score=24.95 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=12.0
Q ss_pred EEEEEEccCCCEEEEE
Q 003221 434 IQDICFSHYSQWIAIV 449 (838)
Q Consensus 434 I~sIaFSpDg~~Las~ 449 (838)
-..|++|+|+++|.++
T Consensus 59 pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 59 PNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEE-TTSSEEEEE
T ss_pred cCeEEEcCCCCEEEEE
Confidence 4789999999976664
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=23.14 E-value=2.7e+02 Score=29.71 Aligned_cols=44 Identities=11% Similarity=0.331 Sum_probs=33.0
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003221 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 391 Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
|..|.+|+++.. + ...++.|. |-..|..|+.+.-|.||++-=.+
T Consensus 37 g~~Vev~~l~~~------~---------~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 37 GCKVEVYDLEQE------E---------CPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CCEEEEEEcccC------C---------CceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 678999999632 2 25677774 34579999999999999986554
No 434
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.44 E-value=6.3e+02 Score=33.67 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
.|..||..|+.+.+-.+|.+=+++|+ |++|++.+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCce-EEEEEccC
Confidence 67889999999999999999999886 99999965
No 435
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=22.01 E-value=2.7e+02 Score=32.45 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.2
Q ss_pred CCeEEEEECCCCCEEEEEecC
Q 003221 370 SPISALCFDPSGTLLVTASVY 390 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~d 390 (838)
+.=..|.|+|||+|.+|.+..
T Consensus 177 H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 177 HFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred cCcccEEECCCCcEEEEeCCC
Confidence 344689999999999998775
No 436
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=21.66 E-value=1.9e+03 Score=28.86 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=56.7
Q ss_pred ceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 349 GIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..+++||+..++.+...+ .-..-|+.++. .+..++.++.+.. ++.+.-.+. + .+++.+.
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~------~----------n~l~~fa 1014 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE------D----------NQLIVFA 1014 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC------C----------CeEEEEe
Confidence 358899998776654443 22445666665 5678888887655 444444332 1 3566654
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
--..+..|+++.+= |-..+|.+..=|.+++-.+.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 22222246655554 4456777777788888887553
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=2.4e+02 Score=33.38 Aligned_cols=87 Identities=14% Similarity=0.251 Sum_probs=58.2
Q ss_pred CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
.++|.++.||+|.+.||.--.+ ..|..++..+.. +.-....+... .++.|...+|+.. +-||.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~-~~v~f~nf~~d~-------------~~l~~~~~ck~--k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTS-KTVDFCNFIPDN-------------SQLEYTQECKT--KNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcceEEEEecC-ceEEEEecCCCc-------------hhhHHHHHhcc--CcceeEEEEEecC-eeEEE
Confidence 4699999999999999988774 558888875420 00011112222 2356999999965 78898
Q ss_pred EeCCCeEEEEecCCCCCcc-ccccCC
Q 003221 449 VSSKGTCHVFVLSPFGGDS-GFQTLS 473 (838)
Q Consensus 449 ~S~dGTVhIw~l~~~gg~~-~~~~H~ 473 (838)
.++.| +-+|.+.+..... ..++|+
T Consensus 129 i~~~G-~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred EecCC-eEEEEEchhhhhhhhhhhcc
Confidence 88888 7899987765432 334554
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.18 E-value=94 Score=40.24 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=55.3
Q ss_pred CceEEEEECCCCcE-----EEEeccCCC------CeEEEEECCCCCEE-EEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 348 AGIVVVKDFVTRAI-----ISQFKAHTS------PISALCFDPSGTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 348 ~G~V~VwDl~s~~~-----v~~~~aH~s------pIsaLaFSPdGtlL-ATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
+-.|.+||+++... -.-|+.|.- -..++.++|.=-+. |.+.. +..|+|+.+.-.
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~-dlsl~V~~~~~~------------- 188 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS-DLSLRVKSTKQL------------- 188 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc-ccchhhhhhhhh-------------
Confidence 33588899975321 222333321 23567777763332 33334 345888887421
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 416 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
......+ --....++++|||-|+.+++|-..||+.-|.-
T Consensus 189 ---~~~v~s~---p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 189 ---AQNVTSF---PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred ---hhhhccc---CcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 0111122 12235899999999999999999999987753
No 439
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=21.11 E-value=1.4e+03 Score=26.89 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=32.3
Q ss_pred CCCEEEEEECC--CCe----------EEEEEeCCCcEEEEEeC-------CCeEEE-EeCCeEEEEECCCCc
Q 003221 171 SPTAVRFYSFQ--SHC----------YEHVLRFRSSVCMVRCS-------PRIVAV-GLATQIYCFDALTLE 222 (838)
Q Consensus 171 ~p~tV~IWDl~--tg~----------~V~tL~f~s~V~sV~~s-------~~iLaV-~l~~~I~IwD~~t~e 222 (838)
.|+++.||.+. .|. .+.+..|....+++.+- ++.|+| ++|+++.+|+-...-
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 47999999883 222 12222455555666552 355555 789999999976543
No 440
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.63 E-value=1.8e+02 Score=20.48 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.6
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEE
Q 003221 434 IQDICFSHYSQWIAIVSSKGTCHVF 458 (838)
Q Consensus 434 I~sIaFSpDg~~Las~S~dGTVhIw 458 (838)
..+|+.+++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678899999988888888888776
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=20.37 E-value=49 Score=41.64 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCceEEEEECC--CCcEEEEe-----ccCCCCeEEEE---ECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccC
Q 003221 347 NAGIVVVKDFV--TRAIISQF-----KAHTSPISALC---FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (838)
Q Consensus 347 ~~G~V~VwDl~--s~~~v~~~-----~aH~spIsaLa---FSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~ 416 (838)
..|...|||+. .|+...++ ..-.+++.-+. |-++.-++..+ .+|..|++-.+...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~-~~~~~i~lL~~~ra-------------- 215 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG-LKGGEIRLLNINRA-------------- 215 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeec-cCCCceeEeeechH--------------
Confidence 46788899885 34432222 22233433333 33444444444 44556888776421
Q ss_pred CcceEEEEEecccccccEEEEE-----------EccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 417 SSHVHLYKLHRGITSATIQDIC-----------FSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 417 ~~~~~l~~L~RG~t~a~I~sIa-----------FSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+.++.|+ |...+.+++ .||||+.+|....||-+..|.+--.|
T Consensus 216 -----~~~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 216 -----LRSLFRS-HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred -----HHHHHHh-cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 1133344 222333332 69999999999999999999875444
Done!